Query 009146
Match_columns 542
No_of_seqs 211 out of 1318
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 20:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12738 PTCB-BRCT: twin BRCT 99.6 3.2E-15 7E-20 119.1 5.0 63 61-127 1-63 (63)
2 KOG1929 Nucleotide excision re 99.5 4.2E-14 9.1E-19 160.3 13.4 179 54-283 6-188 (811)
3 PF00533 BRCT: BRCA1 C Terminu 99.5 5.8E-14 1.3E-18 114.5 9.6 75 54-132 2-78 (78)
4 smart00292 BRCT breast cancer 99.3 5.4E-12 1.2E-16 101.4 7.8 76 56-135 1-80 (80)
5 KOG0966 ATP-dependent DNA liga 99.3 1.9E-11 4.1E-16 136.0 13.2 216 53-282 629-881 (881)
6 KOG3524 Predicted guanine nucl 99.3 2.7E-12 5.8E-17 140.5 6.0 176 53-282 114-292 (850)
7 cd00027 BRCT Breast Cancer Sup 99.3 1.2E-11 2.6E-16 97.1 7.9 70 60-133 1-72 (72)
8 KOG1929 Nucleotide excision re 99.3 1.8E-11 3.9E-16 139.1 11.2 183 53-247 99-284 (811)
9 PF00533 BRCT: BRCA1 C Terminu 99.1 1.1E-10 2.3E-15 95.2 7.4 71 197-270 3-78 (78)
10 KOG3226 DNA repair protein [Re 99.1 4.3E-11 9.3E-16 123.3 5.1 92 53-148 313-404 (508)
11 smart00292 BRCT breast cancer 99.0 1.7E-09 3.7E-14 86.7 6.9 72 199-273 2-80 (80)
12 KOG4362 Transcriptional regula 98.9 6.3E-09 1.4E-13 115.9 12.0 184 57-276 474-681 (684)
13 cd00027 BRCT Breast Cancer Sup 98.8 1.5E-08 3.4E-13 79.3 6.9 67 202-271 1-72 (72)
14 KOG3548 DNA damage checkpoint 98.6 1.4E-07 3E-12 106.7 9.0 196 56-276 924-1158(1176)
15 PLN03122 Poly [ADP-ribose] pol 98.6 1.4E-07 3E-12 108.5 8.8 89 53-146 185-278 (815)
16 PF12738 PTCB-BRCT: twin BRCT 98.5 8.1E-08 1.8E-12 76.4 3.5 60 203-265 1-63 (63)
17 PLN03123 poly [ADP-ribose] pol 98.5 2.5E-07 5.5E-12 108.4 7.6 90 53-146 389-481 (981)
18 KOG3226 DNA repair protein [Re 98.2 9.5E-07 2.1E-11 91.7 4.3 85 197-284 315-402 (508)
19 PRK14350 ligA NAD-dependent DN 98.0 1.8E-05 3.8E-10 90.2 8.2 74 55-132 591-665 (669)
20 KOG2093 Translesion DNA polyme 98.0 6.6E-06 1.4E-10 93.3 4.7 199 53-282 43-243 (1016)
21 PRK06195 DNA polymerase III su 97.9 3.8E-05 8.2E-10 80.1 9.6 79 55-133 218-307 (309)
22 PRK06063 DNA polymerase III su 97.9 2.8E-05 6.1E-10 81.2 7.8 73 56-132 231-305 (313)
23 PRK07956 ligA NAD-dependent DN 97.8 6E-05 1.3E-09 86.1 8.8 75 56-134 589-664 (665)
24 COG0272 Lig NAD-dependent DNA 97.8 5.4E-05 1.2E-09 85.1 8.0 72 56-131 593-665 (667)
25 PRK14351 ligA NAD-dependent DN 97.8 7.4E-05 1.6E-09 85.6 9.0 76 55-134 607-684 (689)
26 TIGR00575 dnlj DNA ligase, NAD 97.7 6.7E-05 1.5E-09 85.6 7.5 69 55-127 582-651 (652)
27 KOG2481 Protein required for n 97.7 2.4E-05 5.2E-10 84.6 3.6 84 197-284 325-416 (570)
28 KOG2043 Signaling protein SWIF 97.6 8.1E-05 1.8E-09 86.9 6.3 126 73-233 670-796 (896)
29 COG5163 NOP7 Protein required 97.5 9.6E-05 2.1E-09 77.8 3.9 89 197-289 348-447 (591)
30 KOG0966 ATP-dependent DNA liga 97.2 0.00057 1.2E-08 77.5 7.0 83 197-281 631-719 (881)
31 PLN03122 Poly [ADP-ribose] pol 97.2 0.00065 1.4E-08 78.8 7.6 83 196-283 186-277 (815)
32 PLN03123 poly [ADP-ribose] pol 97.1 0.001 2.2E-08 78.8 7.1 82 197-281 391-478 (981)
33 KOG3524 Predicted guanine nucl 96.7 0.0017 3.6E-08 72.8 4.4 92 53-149 206-297 (850)
34 KOG2481 Protein required for n 96.5 0.0024 5.2E-08 69.5 4.1 81 55-146 325-416 (570)
35 COG5275 BRCT domain type II [G 96.4 0.011 2.3E-07 58.3 7.6 78 51-132 150-229 (276)
36 KOG0323 TFIIF-interacting CTD 96.4 0.0015 3.3E-08 73.6 1.9 93 53-148 437-533 (635)
37 COG5163 NOP7 Protein required 95.7 0.0082 1.8E-07 63.7 3.2 81 55-146 348-440 (591)
38 KOG2043 Signaling protein SWIF 94.7 0.032 7E-07 65.7 4.7 63 217-282 671-737 (896)
39 KOG3548 DNA damage checkpoint 93.7 0.088 1.9E-06 61.2 5.3 82 197-281 923-1033(1176)
40 PRK14350 ligA NAD-dependent DN 93.2 0.23 5E-06 57.3 7.7 72 197-270 591-665 (669)
41 PRK06063 DNA polymerase III su 92.9 0.3 6.5E-06 51.3 7.4 70 198-270 231-305 (313)
42 PRK06195 DNA polymerase III su 92.7 0.27 5.9E-06 51.3 6.9 73 197-271 218-307 (309)
43 PRK07956 ligA NAD-dependent DN 92.4 0.33 7.2E-06 56.0 7.5 72 198-272 589-664 (665)
44 PRK14351 ligA NAD-dependent DN 91.8 0.46 9.9E-06 55.1 7.8 74 197-272 607-684 (689)
45 COG0272 Lig NAD-dependent DNA 89.6 0.79 1.7E-05 52.4 6.9 71 198-270 593-666 (667)
46 TIGR00575 dnlj DNA ligase, NAD 89.0 0.69 1.5E-05 53.3 6.1 65 197-264 582-650 (652)
47 PRK05601 DNA polymerase III su 84.2 2.9 6.4E-05 45.0 7.3 75 56-134 293-369 (377)
48 KOG4362 Transcriptional regula 78.8 3.7 8E-05 47.2 6.0 74 205-283 480-562 (684)
49 COG5275 BRCT domain type II [G 67.4 19 0.00042 36.0 7.1 72 197-271 154-230 (276)
50 KOG2093 Translesion DNA polyme 66.5 7.7 0.00017 45.7 4.8 83 197-281 45-128 (1016)
51 KOG0323 TFIIF-interacting CTD 63.7 4.2 9.2E-05 46.6 2.1 85 197-284 439-531 (635)
52 COG4840 Uncharacterized protei 61.7 12 0.00026 30.6 3.7 24 458-481 37-62 (71)
53 PF07381 DUF1495: Winged helix 56.8 16 0.00036 31.6 4.0 37 457-496 10-46 (90)
54 COG4753 Response regulator con 43.9 20 0.00043 40.0 3.2 28 458-485 374-401 (475)
55 PRK11511 DNA-binding transcrip 41.5 24 0.00053 31.8 2.9 40 453-492 6-45 (127)
56 PF14835 zf-RING_6: zf-RING of 40.3 9.2 0.0002 31.1 -0.0 17 8-24 19-35 (65)
57 COG4844 Uncharacterized protei 38.4 27 0.00058 28.7 2.3 19 454-472 57-75 (78)
58 PRK10219 DNA-binding transcrip 37.5 35 0.00075 29.4 3.2 35 458-492 7-41 (107)
59 PF01726 LexA_DNA_bind: LexA D 37.0 43 0.00093 27.0 3.4 29 459-487 9-40 (65)
60 PRK10371 DNA-binding transcrip 35.0 38 0.00082 35.1 3.5 35 458-492 193-227 (302)
61 PF13936 HTH_38: Helix-turn-he 32.0 36 0.00078 25.1 2.0 22 464-485 12-33 (44)
62 PF14605 Nup35_RRM_2: Nup53/35 32.0 1.2E+02 0.0025 23.4 4.9 36 62-97 3-38 (53)
63 COG5067 DBF4 Protein kinase es 31.5 34 0.00075 37.0 2.5 51 53-103 118-168 (468)
64 PF15101 DUF4557: Domain of un 31.1 1.2E+02 0.0026 30.2 5.9 68 200-275 1-77 (212)
65 COG5573 Predicted nucleic-acid 30.3 67 0.0015 29.9 3.8 54 432-488 39-96 (142)
66 PF09860 DUF2087: Uncharacteri 29.5 98 0.0021 25.5 4.4 37 458-496 13-54 (71)
67 PRK09685 DNA-binding transcrip 27.7 59 0.0013 33.1 3.4 35 458-492 199-234 (302)
68 KOG0177 20S proteasome, regula 26.7 52 0.0011 32.3 2.6 46 434-482 115-160 (200)
69 COG5067 DBF4 Protein kinase es 26.2 47 0.001 36.1 2.4 48 197-247 120-167 (468)
70 PF09832 DUF2059: Uncharacteri 25.4 76 0.0016 24.9 3.0 25 458-482 2-26 (64)
71 PRK13502 transcriptional activ 25.3 64 0.0014 32.5 3.2 35 458-492 178-212 (282)
72 PRK13500 transcriptional activ 23.0 72 0.0016 33.0 3.1 35 458-492 208-242 (312)
73 PF09358 UBA_e1_C: Ubiquitin-a 22.5 40 0.00088 30.7 1.0 45 426-470 1-57 (125)
74 TIGR02949 anti_SigH_actin anti 22.1 1.3E+02 0.0027 25.4 3.9 28 453-480 4-31 (84)
75 TIGR00498 lexA SOS regulatory 21.6 1E+02 0.0022 29.6 3.7 30 458-487 8-40 (199)
76 PF05184 SapB_1: Saposin-like 21.4 1.1E+02 0.0023 21.4 2.8 27 457-483 6-32 (39)
77 PRK13501 transcriptional activ 21.3 97 0.0021 31.5 3.6 36 457-492 177-212 (290)
78 smart00550 Zalpha Z-DNA-bindin 21.3 1.7E+02 0.0037 23.5 4.3 47 458-509 8-54 (68)
79 COG0289 DapB Dihydrodipicolina 21.1 93 0.002 32.2 3.3 35 59-93 94-128 (266)
80 PRK13503 transcriptional activ 20.8 95 0.0021 31.0 3.3 35 458-492 173-207 (278)
81 PF11373 DUF3175: Protein of u 20.3 72 0.0016 27.3 1.9 21 323-343 66-86 (86)
No 1
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.56 E-value=3.2e-15 Score=119.05 Aligned_cols=63 Identities=40% Similarity=0.736 Sum_probs=55.8
Q ss_pred cEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechH
Q 009146 61 LVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (542)
Q Consensus 61 lvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~W 127 (542)
++||+||+.+.+|..|.++|+.|||.|..++++++|||||....+.||+.|.+| ||+||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~----gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEW----GIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHC----TSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHC----CCcEECCCC
Confidence 589999999999999999999999999999999999999999999999999998 799999999
No 2
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.53 E-value=4.2e-14 Score=160.30 Aligned_cols=179 Identities=17% Similarity=0.258 Sum_probs=146.9
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
.+++|.|+.||.|++.+..++.|.+.+..+||.|...++++|||||+......||..|.. .+++|++..||...+.
T Consensus 6 ~~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~~a~~----~~~~~~~~~wi~~~~d 81 (811)
T KOG1929|consen 6 YSKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYAAAHR----FDIKVLDSSWIDYIYD 81 (811)
T ss_pred cCcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchhhhhc----CCCceecchHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999955544 5999999999999887
Q ss_pred cccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCCH
Q 009146 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (542)
Q Consensus 134 ~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs~ 213 (542)
.+.. . ..-.+.. .+.+. .....|.||.|++ .||+.
T Consensus 82 ~~~~-~-~e~~~~~------------~l~~~------------------------------~~~p~~~~~~Vc~-tgl~~ 116 (811)
T KOG1929|consen 82 LWLL-N-KEIRLLD------------PLRDT------------------------------MKCPGFFGLKVCL-TGLSG 116 (811)
T ss_pred Hhhh-h-ccCccCc------------cchhh------------------------------hcCCcccceEEEe-cccch
Confidence 7654 2 1111100 00000 1135789999999 99999
Q ss_pred HHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc-hHhHH---hcCCCceecHHHHHHHHHhcCcCccCCcCh
Q 009146 214 ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHISA 283 (542)
Q Consensus 214 ~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~-s~kk~---l~~~~~IVs~~WLlDcik~g~llp~~~ys~ 283 (542)
.++..+..+|..+||++... +...+.||++... ...+| +.++++||+..|+++|+.++..++...|-.
T Consensus 117 ~eK~ei~~~v~k~gg~~~~~--L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~~~s~~~~~~~~~~~~e~ 188 (811)
T KOG1929|consen 117 DEKSEIKILVPKHGGTLHRS--LSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWLFDSIEKTAVLETKPYEG 188 (811)
T ss_pred HHHHHHHHHhhhcccEEehh--hhhhhheeeeccccchHHHHHHHhhCCccccHHHHhhhhccccccccccccc
Confidence 99999999999999999999 5778888877663 22555 479999999999999999999988777743
No 3
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.52 E-value=5.8e-14 Score=114.52 Aligned_cols=75 Identities=24% Similarity=0.555 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC--CCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF--GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~--~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
+.++|+|+.||++++...+++.|.++|+.+||.+...+++.+||+|+... ...||..|..+ +++||+++||.||
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~----~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIAN----GIPIVSPDWIEDC 77 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHT----TSEEEETHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHC----CCeEecHHHHHHh
Confidence 46899999999999999999999999999999999999999999999988 78999999985 8999999999999
Q ss_pred H
Q 009146 132 V 132 (542)
Q Consensus 132 i 132 (542)
+
T Consensus 78 i 78 (78)
T PF00533_consen 78 I 78 (78)
T ss_dssp H
T ss_pred C
Confidence 6
No 4
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.31 E-value=5.4e-12 Score=101.36 Aligned_cols=76 Identities=34% Similarity=0.570 Sum_probs=67.1
Q ss_pred CCCCCcEEEEeC-CChhhHHHHHHHHHhcCCEEcccCCC-CceEEEEecCCCHH--HHHHHhcCCCCCcEEEechHHHHH
Q 009146 56 APFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRK--FEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 56 ~iF~GlvIcvtG-~~~~er~~L~~lI~~~GG~~s~~Ls~-~~THLVa~~~~g~K--y~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
++|+|++||++| +....+..+.++|..+||.+...++. ++||+|+.+....+ +..|.. .+++||+++||.||
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~----~~~~iV~~~Wi~~~ 76 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIA----LGIPIVTEDWLLDC 76 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHH----cCCCCccHHHHHHH
Confidence 479999999999 78899999999999999999999998 99999999886654 455555 48999999999999
Q ss_pred HHcc
Q 009146 132 VRRN 135 (542)
Q Consensus 132 i~~g 135 (542)
++.+
T Consensus 77 ~~~~ 80 (80)
T smart00292 77 LKAG 80 (80)
T ss_pred HHCc
Confidence 9864
No 5
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=99.29 E-value=1.9e-11 Score=135.99 Aligned_cols=216 Identities=19% Similarity=0.236 Sum_probs=132.6
Q ss_pred CCCCCCCCcEEEE-eCCChh-hHHHHHHHHHhcCCEEcccCCCCceEEEEe--cCCCHHHHHHHhcCCCCCcEEEechHH
Q 009146 53 PANAPFSGLVICV-TGLSKE-ARKQVMEATERLGGQYSPDLHPQCTHLVVQ--SFGGRKFEHALKHGSRNGLYIVTLGWF 128 (542)
Q Consensus 53 ~~~~iF~GlvIcv-tG~~~~-er~~L~~lI~~~GG~~s~~Ls~~~THLVa~--~~~g~Ky~~A~k~g~~~gI~IV~p~WI 128 (542)
....+|.|+.||| +|.... .|..++++|.++||.+.+++.+..||+|+. ...+.+-..|++ +++.||+|.|+
T Consensus 629 ~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~----~~cdVl~p~Wl 704 (881)
T KOG0966|consen 629 KISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIK----RSCDVLKPAWL 704 (881)
T ss_pred chhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHh----ccCceeeHHHH
Confidence 4678999999999 567664 589999999999999999999999999963 333444444555 38999999999
Q ss_pred HHHHHcccCCCCCccccccccccCC---------chhhhhcccCC-------CCCCCCC--CCccchhhhcccccccccc
Q 009146 129 VDSVRRNVRLSESLYTVKSIDEHGM---------HLDKLNRLVGF-------AGTENSC--LPAGIYEAKQFNATGKHER 190 (542)
Q Consensus 129 ~Dci~~g~~Lde~~Y~l~~~~e~~~---------p~d~~~~L~~~-------s~~e~s~--lp~~I~esk~s~s~E~ld~ 190 (542)
.||+...+++++.++.+-...+... ..|.+...+++ +.++.+. +|.. ..-+.+-
T Consensus 705 ldcc~~~~l~p~~P~~~fh~~e~~~~~~a~~~D~~gdSy~~di~l~~l~~~ls~~k~S~ds~~~~--------~~~~~~~ 776 (881)
T KOG0966|consen 705 LDCCKKQRLLPWLPRDLFHATEKGREKLAKEVDCLGDSYENDIDLEQLKKVLSGIKKSQDSLPPM--------GASEKDS 776 (881)
T ss_pred HHHHhhhhccccccHHHHhhCchHHHHHHHHHhhhcchhhhhccHHHHHHHHhhhhhcccccCch--------hhhhhhc
Confidence 9999999999887655532222111 01111111111 1011100 0000 0000111
Q ss_pred ccccCCCCCCCCcEEE-EeCC-CCHHHHHHHHHHHHhCCCEEEccc----cCCCCceEEEecC--ch------HhHHh-c
Q 009146 191 DSNRSMNSTLSGCSMY-VDSD-VSEELRNKVFEAATNEGATLVNQW----FVGCGASYVVCEE--DS------VQKYM-G 255 (542)
Q Consensus 191 ~~~~~~~~lF~G~~Iy-ld~g-fs~~~r~~L~~lI~~~GG~vvds~----~l~~~vTHVVv~~--~s------~kk~l-~ 255 (542)
.+.+.+. +|..+++| ...+ ++. .-....-.++.+||.+++.- .....+||+|+.. .+ .++.. .
T Consensus 777 ~e~r~~~-~~~~~~~f~~~~~~~~s-e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt 854 (881)
T KOG0966|consen 777 LERRFSL-FLSSLRMFYVLRRKLSS-EEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLT 854 (881)
T ss_pred HHHhhcc-ccccceeeecccccccH-HHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhc
Confidence 1222223 33334433 3223 333 33556667888899998763 2455679999873 11 11221 2
Q ss_pred CCCceecHHHHHHHHHhcCcCccCCcC
Q 009146 256 HSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 256 ~~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
...+||.+.||.+|+.++.++|+.+|+
T Consensus 855 ~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 855 IKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred ccccccCHHHHHHhhcccccCccccCC
Confidence 222999999999999999999998874
No 6
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=99.29 E-value=2.7e-12 Score=140.53 Aligned_cols=176 Identities=17% Similarity=0.288 Sum_probs=141.5
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
-.+-+|.+++.|+||+-..+. .+..+|+.|||.+..+++..+||+|+....++||..|+- +.+++.|+||..||
T Consensus 114 ly~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t-----~~~~~rp~wv~~aw 187 (850)
T KOG3524|consen 114 LYCELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALV-----GVPTMRPDWVTEAW 187 (850)
T ss_pred ccchhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEee-----ccceechHhhhhhh
Confidence 567899999999999988655 999999999999999999999999999999999999987 59999999999999
Q ss_pred HcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 009146 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs 212 (542)
+....+ .|.+..+ |. .....-..|.|+.|++ .||+
T Consensus 188 ~~rn~~---yfda~~~----------------------~f-------------------~d~hrl~~feg~~~~f-~gF~ 222 (850)
T KOG3524|consen 188 KHRNDS---YFDAMEP----------------------CF-------------------VDKHRLGVFEGLSLFF-HGFK 222 (850)
T ss_pred cCcchh---hhhhhcc----------------------ch-------------------hhhhccccccCCeEee-cCCc
Confidence 865332 2222110 00 0001135789999999 9999
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh---cCCCceecHHHHHHHHHhcCcCccCCcC
Q 009146 213 EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 213 ~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l---~~~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
.++.+.+.+..+..||.+... +..+||||++++...... ..+..+|..+|.+=+|.+|.+-.+..|-
T Consensus 223 ~ee~~~m~~sle~~gg~~a~~---d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ewfw~siq~g~~a~e~~yl 292 (850)
T KOG3524|consen 223 QEEIDDMLRSLENTGGKLAPS---DTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEWFWVSIQRGCCAIEDNYL 292 (850)
T ss_pred HHHHHHHHHHHHhcCCcccCC---CCCceeEeecCCccccccccccccceeecccceEEEEecchhcccccee
Confidence 999999999999999999986 888999999985433222 4567899999999888888666555553
No 7
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.28 E-value=1.2e-11 Score=97.07 Aligned_cols=70 Identities=36% Similarity=0.612 Sum_probs=63.7
Q ss_pred CcEEEEeCCC-hhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHH-HHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 60 GLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRK-FEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 60 GlvIcvtG~~-~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~K-y~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
|+.||++|.. ..++..|.++|..+||++...++..+||+|+......+ +..|..+ +++||+++||.||++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~----~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKL----GIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHc----CCeEecHHHHHHHhC
Confidence 6899999988 79999999999999999999999999999999887665 7777775 899999999999974
No 8
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=99.26 E-value=1.8e-11 Score=139.15 Aligned_cols=183 Identities=17% Similarity=0.200 Sum_probs=134.7
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
..++.|.|+.||+|||...+|.++..+|..|||++...|..+++|++...... .||+.|++| +++||+.+|+++|
T Consensus 99 ~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~w----n~~v~~~~w~~~s 174 (811)
T KOG1929|consen 99 MKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKW----NIPVVSDDWLFDS 174 (811)
T ss_pred hcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhh----CCccccHHHHhhh
Confidence 35789999999999999999999999999999999999999888888776655 999999999 8999999999999
Q ss_pred HHcccCCCCCccccccccccC-CchhhhhcccCCCCCCCCCCCccchhhhccc-cccccccccccCCCCCCCCcEEEEeC
Q 009146 132 VRRNVRLSESLYTVKSIDEHG-MHLDKLNRLVGFAGTENSCLPAGIYEAKQFN-ATGKHERDSNRSMNSTLSGCSMYVDS 209 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~e~~-~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~-s~E~ld~~~~~~~~~lF~G~~Iyld~ 209 (542)
+..+..++...|++....+.. .+... .+. .....+.....+...... ..-+.+....+....+..+|.+|+ +
T Consensus 175 ~~~~~~~~~~~~e~~~~~~~is~~~~~--~~~---~~~~~~~s~t~~~~~~~~~~~~n~~~~p~~a~~~~~~~c~v~~-s 248 (811)
T KOG1929|consen 175 IEKTAVLETKPYEGAPVAEAISGPIGS--TLP---KEILDGDSRTANDTWSTSKVVTNIKVLPFQAKIGNLDDCLVET-S 248 (811)
T ss_pred hcccccccccccccccccceeccCCcc--ccc---cccccccchhhhccccchhcccccccchhhhhccccccceeee-c
Confidence 999999999999998633222 11100 000 000000000000000000 011122222333445789999999 9
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC
Q 009146 210 DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (542)
Q Consensus 210 gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~ 247 (542)
+++...+..|.+.++..||.-.+. ....++|++.++
T Consensus 249 ~~~~~~~s~l~r~~~~g~~~~~~e--~~e~~st~l~~~ 284 (811)
T KOG1929|consen 249 GTTSRNRSALSRLSNNGGSLRFLE--RLEETSTSLLGD 284 (811)
T ss_pred CCcccchhHhHHhhhcccceeecc--cCccccchhhcc
Confidence 999999999999999999998888 578889999887
No 9
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.15 E-value=1.1e-10 Score=95.18 Aligned_cols=71 Identities=18% Similarity=0.421 Sum_probs=63.2
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc--hHhHH---hcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--SVQKY---MGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~--s~kk~---l~~~~~IVs~~WLlDci 270 (542)
..+|+|+.||| .+++...++.+.++|+.+||++... .+..+||||+... ...++ ...+++||++.||.||+
T Consensus 3 ~~~F~g~~f~i-~~~~~~~~~~l~~~i~~~GG~v~~~--~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 3 PKIFEGCTFCI-SGFDSDEREELEQLIKKHGGTVSNS--FSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTTEEEEE-SSTSSSHHHHHHHHHHHTTEEEESS--SSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCEEEEE-ccCCCCCHHHHHHHHHHcCCEEEee--cccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 57999999999 9999999999999999999999998 6999999999875 33333 36899999999999997
No 10
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.12 E-value=4.3e-11 Score=123.27 Aligned_cols=92 Identities=22% Similarity=0.370 Sum_probs=86.2
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
..+++++|++++++||...+|..|......+|++|..+++..+|||||.-+.+.||.+..- +|-+||+.+||.+|.
T Consensus 313 el~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g----~Gg~IV~keWI~~Cy 388 (508)
T KOG3226|consen 313 ELSKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEG----NGGTIVSKEWITECY 388 (508)
T ss_pred hHHHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhccc----CCceEeeHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999999876 478999999999999
Q ss_pred HcccCCCCCccccccc
Q 009146 133 RRNVRLSESLYTVKSI 148 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~ 148 (542)
+..++||+..|.+...
T Consensus 389 ~~kk~lp~rrYlm~~~ 404 (508)
T KOG3226|consen 389 AQKKLLPIRRYLMHAG 404 (508)
T ss_pred HHHhhccHHHHHhcCC
Confidence 9999999999998643
No 11
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.95 E-value=1.7e-09 Score=86.70 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=61.0
Q ss_pred CCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCC-CceEEEecCchH-----hHHhcCCCceecHHHHHHHHH
Q 009146 199 TLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGC-GASYVVCEEDSV-----QKYMGHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 199 lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~-~vTHVVv~~~s~-----kk~l~~~~~IVs~~WLlDcik 271 (542)
+|+|+.||+ .| +....++.+.+++..+||++... .+. .+||+|+.+... ......+++||++.||.||++
T Consensus 2 ~f~g~~~~~-~g~~~~~~~~~l~~~i~~~Gg~~~~~--~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 78 (80)
T smart00292 2 LFKGKVFVI-TGKFDKNERDELKELIEALGGKVTSS--LSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLK 78 (80)
T ss_pred ccCCeEEEE-eCCCCCccHHHHHHHHHHcCCEEecc--cCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHH
Confidence 799999999 56 88889999999999999999998 455 899999988432 233368899999999999998
Q ss_pred hc
Q 009146 272 EK 273 (542)
Q Consensus 272 ~g 273 (542)
++
T Consensus 79 ~~ 80 (80)
T smart00292 79 AG 80 (80)
T ss_pred Cc
Confidence 64
No 12
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=98.92 E-value=6.3e-09 Score=115.93 Aligned_cols=184 Identities=18% Similarity=0.253 Sum_probs=133.2
Q ss_pred CCC-CcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 57 PFS-GLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 57 iF~-GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~------~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
-|+ .++.+++|+.+.++..|.+.++. +...+.+..+||+|+... .+.||..++. +|.||+++.|+.
T Consensus 474 ~~~kk~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil----~gkwi~~~~w~~ 546 (684)
T KOG4362|consen 474 RFKKKLVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGIL----RGKWILSYDWVL 546 (684)
T ss_pred CcccceeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhh----cCceeeeHHHHH
Confidence 444 47899999999999999999988 888888899999999875 3567777766 589999999999
Q ss_pred HHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeC
Q 009146 130 DSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDS 209 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~ 209 (542)
.|++.+++++|.+|++.-..-... .++... ... .......||.|..||+..
T Consensus 547 ~s~k~~~~~~eepfEl~~d~~~~~--------------------~~~~~~--------~~~-a~s~~~kLf~gl~~~~~g 597 (684)
T KOG4362|consen 547 ASLKLRKWVSEEPFELQIDVPGAR--------------------EGPKEK--------RLR-AESYKPKLFEGLKFYFVG 597 (684)
T ss_pred HHHHhcCCCCCCCeeEeecccCcc--------------------cCcccc--------ccc-ccccCcchhcCCcceeec
Confidence 999999999999999863211110 000000 000 001236899999999977
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEcc---ccCCCCceEEEecCc-------------hHhHHh-cCCCceecHHHHHHHHHh
Q 009146 210 DVSEELRNKVFEAATNEGATLVNQ---WFVGCGASYVVCEED-------------SVQKYM-GHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 210 gfs~~~r~~L~~lI~~~GG~vvds---~~l~~~vTHVVv~~~-------------s~kk~l-~~~~~IVs~~WLlDcik~ 272 (542)
.|+..-.++|++++...||++... ...+..++.+++-.. +...+. ..+...|+..||+|++.-
T Consensus 598 ~fs~~p~~~l~~l~~~~gg~~l~~~~~~~~~~k~s~~~~~~~~~~~~~~~~~k~~~~ea~~~s~~a~~~~~~wvl~s~a~ 677 (684)
T KOG4362|consen 598 DFSNPPKEQLQELVHLAGGTILQVPRVAYSDKKKSTIVVLSEKPVLDSILWQKVNDAEALALSQRARAVSSSWVLDSIAG 677 (684)
T ss_pred ccccCcHHHHHHHHhhcCcceeeccCcccccccccceeEeecccCCCchhhhhhccHHHHHHhcCCCccchhhhhcchhc
Confidence 799999999999999999998753 123444555544321 122222 578899999999999965
Q ss_pred cCcC
Q 009146 273 KHVQ 276 (542)
Q Consensus 273 g~ll 276 (542)
...+
T Consensus 678 ~~~~ 681 (684)
T KOG4362|consen 678 YQIL 681 (684)
T ss_pred eeee
Confidence 4443
No 13
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.79 E-value=1.5e-08 Score=79.25 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=56.0
Q ss_pred CcEEEEeCCCC-HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCch----HhHHhcCCCceecHHHHHHHHH
Q 009146 202 GCSMYVDSDVS-EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS----VQKYMGHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 202 G~~Iyld~gfs-~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s----~kk~l~~~~~IVs~~WLlDcik 271 (542)
|+.||+ .|.. ...+..|.++++.+||++.+. .+..+||||+.... .......+++||++.||.||++
T Consensus 1 ~~~~~i-~g~~~~~~~~~l~~~i~~~Gg~v~~~--~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVI-TGDLPSEERDELKELIEKLGGKVTSS--VSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEE-EecCCCcCHHHHHHHHHHcCCEEecc--ccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence 688999 6655 778899999999999999998 57799999998843 2333468899999999999984
No 14
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=98.58 E-value=1.4e-07 Score=106.74 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=111.8
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEccc-CCC----C---------------------ceEEEEecC-CCHHH
Q 009146 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-LHP----Q---------------------CTHLVVQSF-GGRKF 108 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~-Ls~----~---------------------~THLVa~~~-~g~Ky 108 (542)
.+|.||+|.+|+.... +++....++.|||.+... |.. . --.||+... .+.||
T Consensus 924 niFd~cvF~lTsa~~s-d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt~KY 1002 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANRS-DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRTHKY 1002 (1176)
T ss_pred chhcceeEEEeccccc-hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhHHHHH
Confidence 6999999999997653 334455555678775332 111 1 124555443 57899
Q ss_pred HHHHhcCCCCCcEEEechHHHHHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhcccccccc
Q 009146 109 EHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKH 188 (542)
Q Consensus 109 ~~A~k~g~~~gI~IV~p~WI~Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~l 188 (542)
..|++. ||+.|++.||.+|+++++++|-.+|.++..-..... ..+.. .| .-.+..++|
T Consensus 1003 LeaLA~----giPcVh~~fI~aC~e~nr~Vdy~~YLLpsGyS~rld----s~l~~-----------~i---~~fn~~~nL 1060 (1176)
T KOG3548|consen 1003 LEALAR----GIPCVHNTFIQACGEQNRCVDYTDYLLPSGYSIRLD----SQLMP-----------AI---EPFNPSENL 1060 (1176)
T ss_pred HHHHHc----CCCcccHHHHHHHHhccccccchhhcccCccccccc----ccccc-----------Cc---cccCchhhc
Confidence 999996 899999999999999999999999988642111100 00000 00 000001111
Q ss_pred ccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCC---CCc----eEEEecC----chHhHHh-cC
Q 009146 189 ERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVG---CGA----SYVVCEE----DSVQKYM-GH 256 (542)
Q Consensus 189 d~~~~~~~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~---~~v----THVVv~~----~s~kk~l-~~ 256 (542)
-...-.-.+.+ .+..|.+ .|=...-.+.....+..+|+.+++..+.+ .+. --||+.+ .+..+++ .-
T Consensus 1061 kd~~l~vk~~l-~~~~v~q-~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~svmk~ad~l 1138 (1176)
T KOG3548|consen 1061 KDTTLYVKSTL-SAREVTQ-TGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRDSVMKYADTL 1138 (1176)
T ss_pred cceeeEeeccc-cceeEEE-ecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHHHHHHHHHHh
Confidence 10000011222 3333333 23234455666677777777787763211 111 1133333 3556666 47
Q ss_pred CCceecHHHHHHHHHhcCcC
Q 009146 257 SNNLVTPVWVLKTAKEKHVQ 276 (542)
Q Consensus 257 ~~~IVs~~WLlDcik~g~ll 276 (542)
+.++|+++||.+||-.|..-
T Consensus 1139 ~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1139 GAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred CCCccChhHhheeeeccccC
Confidence 89999999999999887643
No 15
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=98.56 E-value=1.4e-07 Score=108.48 Aligned_cols=89 Identities=25% Similarity=0.456 Sum_probs=78.4
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCC-----CHHHHHHHhcCCCCCcEEEechH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG-----GRKFEHALKHGSRNGLYIVTLGW 127 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~-----g~Ky~~A~k~g~~~gI~IV~p~W 127 (542)
...++|.|++|||||.....|.+++++|+.+||+++..+ ..+||+|+.... +.|+++|.+. ||+||+.+|
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~l----gIpIVsEd~ 259 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMER----GIPVVREAW 259 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHc----CCcCccHHH
Confidence 456789999999999776689999999999999999999 556788877643 3799999996 899999999
Q ss_pred HHHHHHcccCCCCCccccc
Q 009146 128 FVDSVRRNVRLSESLYTVK 146 (542)
Q Consensus 128 I~Dci~~g~~Lde~~Y~l~ 146 (542)
|.+|+..+..+++..|.+.
T Consensus 260 L~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 260 LIDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHHhcCCcccchhhhhc
Confidence 9999999999999999884
No 16
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.51 E-value=8.1e-08 Score=76.36 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=48.8
Q ss_pred cEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh---cCCCceecHHH
Q 009146 203 CSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVW 265 (542)
Q Consensus 203 ~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l---~~~~~IVs~~W 265 (542)
++|++ +||++.++..|.++++.+||.+.++ +..++||+|+.....+||. .++++||+++|
T Consensus 1 ~~i~~-sg~~~~~~~~l~~~i~~~Gg~~~~~--lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICF-SGFSGKERSQLRKLIEALGGKYSKD--LTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEE-EEB-TTTCCHHHHHHHCTT-EEESS--SSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEE-CCCCHHHHHHHHHHHHHCCCEEecc--ccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 46888 9999999999999999999999999 5889999999887666664 68899999999
No 17
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=98.46 E-value=2.5e-07 Score=108.39 Aligned_cols=90 Identities=20% Similarity=0.305 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC---CCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~---~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
...++|.|+.|++.|-.+..+.++.++|+.+||+|+..++..+||||+... .+.|++.|.+. +|+||+.+||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~----~ipIVsedwL~ 464 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRM----KIPIVREDYLV 464 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhc----CCCcccHHHHH
Confidence 456899999999999878778999999999999999999999999999863 46789999885 79999999999
Q ss_pred HHHHcccCCCCCccccc
Q 009146 130 DSVRRNVRLSESLYTVK 146 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l~ 146 (542)
||+..+..+++..|.+.
T Consensus 465 ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 465 DCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHhccccCcchhhhhc
Confidence 99999999998888764
No 18
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=98.22 E-value=9.5e-07 Score=91.74 Aligned_cols=85 Identities=19% Similarity=0.385 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh---cCCCceecHHHHHHHHHhc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l---~~~~~IVs~~WLlDcik~g 273 (542)
+.+++|+.|.| +||....|..|+.....+|+++..+| +.++||+||.-...-||. +.+-+||+-+||++|...+
T Consensus 315 ~klL~GVV~Vl-SGfqNP~Rs~LRskAl~LGAkY~pDW--~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~k 391 (508)
T KOG3226|consen 315 SKLLEGVVFVL-SGFQNPERSTLRSKALTLGAKYQPDW--NAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQK 391 (508)
T ss_pred HHhhhceEEEE-ecccCchHHHHHHHHHhhcccccCCc--CCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHH
Confidence 67899999999 99999999999999999999999998 889999999886666664 6778999999999999999
Q ss_pred CcCccCCcChH
Q 009146 274 HVQRLVHISAD 284 (542)
Q Consensus 274 ~llp~~~ys~d 284 (542)
+++|+..|-.+
T Consensus 392 k~lp~rrYlm~ 402 (508)
T KOG3226|consen 392 KLLPIRRYLMH 402 (508)
T ss_pred hhccHHHHHhc
Confidence 99999887443
No 19
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.96 E-value=1.8e-05 Score=90.25 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCCCcEEEEeC-CChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 55 NAPFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 55 ~~iF~GlvIcvtG-~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
..+|.|.+||||| +....|.+++++|+++||++...++++|++||++...|.|.++|.+. ||+|++.+.+.+-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~L----GI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNL----GIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHc----CCEEecHHHHHHHh
Confidence 4579999999999 55679999999999999999999999999999999889999999996 89999999887643
No 20
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=97.96 E-value=6.6e-06 Score=93.28 Aligned_cols=199 Identities=10% Similarity=0.098 Sum_probs=121.3
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEc-ccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYS-PDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s-~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
.....|.|+.||+.|...+..++++..-..|||.+. .+.-..+||+|+......+.+-. ..=+..+++|+.+|
T Consensus 43 t~~s~fs~is~~~ngs~~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk~~------~~~~~~~~e~iie~ 116 (1016)
T KOG2093|consen 43 TGSSSFSGISISVNGSTDESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVKGF------TIPKHISIEWIIEC 116 (1016)
T ss_pred CCcceeeeeeeccCCccccchHHHhhhhhhcccccccccccccceeeecccchHHHhccc------cchhhhcHHHHHHH
Confidence 466799999999999999999999999999999998 55556899999988754443321 23466889999999
Q ss_pred HHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCC
Q 009146 132 VRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV 211 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gf 211 (542)
++.+..+.--+|..........+. +... .. +.|.. -..+..+..+|.++.|+| .|+
T Consensus 117 ~~~~~~~~~~~~~~~t~~~h~q~~-----~~~~---~~-~~~~D--------------~q~~~~~~ki~~~n~iki-nG~ 172 (1016)
T KOG2093|consen 117 CENGMDVGYYPYQLYTGQSHEQAQ-----LAFP---VT-SFPKD--------------QQISSQSSKIFKNNVIKI-NGY 172 (1016)
T ss_pred HhccCccccccceeeccchhcccc-----cCCC---cc-cCCcc--------------ccccccchhccccceeee-cCC
Confidence 999998887777665332222111 0000 00 11100 001112357899999999 888
Q ss_pred CHHHHHHHH-HHHHhCCCEEEccccCCCCceEEEecCchHhHHhcCCCceecHHHHHHHHHhcCcCccCCcC
Q 009146 212 SEELRNKVF-EAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 212 s~~~r~~L~-~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
+++..-.|. -....+++...+.....+.++|.+-+..=.++. -.+...++|.|+.+.+..-...++..||
T Consensus 173 ~E~~~~dlepp~gv~~d~~~~~~~~~rd~v~~~l~~~~l~n~~-f~n~~~~sP~~~~~k~~~a~~~~~~~~S 243 (1016)
T KOG2093|consen 173 NEPESLDLEPPSGVLHDKAEDDSTSARDHVDHELAGNLLLNKR-FVNIENTSPDWIVDKELTAHTGTGQNYS 243 (1016)
T ss_pred CCccccccCCCcccccchhhhhhhhHHHHHHHHhccccccccc-cceeeecCchhhhhhhhhhccCCccccc
Confidence 755432222 111112222222211233344444332100000 1355678999999999887777777777
No 21
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.94 E-value=3.8e-05 Score=80.08 Aligned_cols=79 Identities=20% Similarity=0.269 Sum_probs=65.1
Q ss_pred CCCCCCcEEEEeCCC-hhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC---------CCHHHHHHHhcC-CCCCcEEE
Q 009146 55 NAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---------GGRKFEHALKHG-SRNGLYIV 123 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~-~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~---------~g~Ky~~A~k~g-~~~gI~IV 123 (542)
..+|.|.+|||||-. .-.|.+++++|+.+||.+..+++++|++||++.. .+.|.++|.+.. .-.+|+|+
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ii 297 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKFL 297 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEEe
Confidence 357999999999955 5799999999999999999999999999999953 478999998741 01489999
Q ss_pred echHHHHHHH
Q 009146 124 TLGWFVDSVR 133 (542)
Q Consensus 124 ~p~WI~Dci~ 133 (542)
+.+=+.+-++
T Consensus 298 ~E~~f~~l~~ 307 (309)
T PRK06195 298 NEEEFLQKCK 307 (309)
T ss_pred cHHHHHHHHh
Confidence 9876665443
No 22
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.89 E-value=2.8e-05 Score=81.25 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=65.6
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC--HHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g--~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
++|.|.+|+|||-....|.+++++|+.+||++..++++++++||+++..+ .|.++|.+. ||+|++.+=+.+-+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~----gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL----GVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc----CCccccHHHHHHHH
Confidence 45899999999966679999999999999999999999999999998776 799999995 89999988777655
No 23
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=97.79 E-value=6e-05 Score=86.12 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=68.4
Q ss_pred CCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHHc
Q 009146 56 APFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~ 134 (542)
.+|.|..|||||... -.|.+++++|+.+||.++.+++++|++||++...|.|.++|.+. ||+|++.+-+.+.+..
T Consensus 589 ~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~l----gI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQEL----GIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHc----CCeEEcHHHHHHHHhc
Confidence 359999999999765 59999999999999999999999999999999889999999996 8999999998887654
No 24
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=97.78 E-value=5.4e-05 Score=85.05 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCCCCcEEEEeC-CChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 56 APFSGLVICVTG-LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 56 ~iF~GlvIcvtG-~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
.+|.|.+|++|| +..-.|.+++++++.+||+++.++++++++||++...|.|+.+|.+. ||+|++.+++..-
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eL----gv~i~~E~~~~~l 665 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQEL----GVKIIDEEEFLAL 665 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHc----CCeEecHHHHHHh
Confidence 789999999999 44589999999999999999999999999999999999999999996 8999999988653
No 25
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=97.76 E-value=7.4e-05 Score=85.55 Aligned_cols=76 Identities=21% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
..+|.|.+|||||... -.|.+++++|+.+||++..+++++|++||++...| .|.++|.+. ||+|++.+-+.+-+
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~l----gi~ii~E~~f~~ll 682 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEAN----DVPTLDEEEFEELL 682 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHC----CCeEecHHHHHHHH
Confidence 4579999999999664 59999999999999999999999999999998888 799999995 89999999998877
Q ss_pred Hc
Q 009146 133 RR 134 (542)
Q Consensus 133 ~~ 134 (542)
+.
T Consensus 683 ~~ 684 (689)
T PRK14351 683 AE 684 (689)
T ss_pred Hh
Confidence 64
No 26
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=97.70 E-value=6.7e-05 Score=85.57 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=62.5
Q ss_pred CCCCCCcEEEEeCCC-hhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechH
Q 009146 55 NAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGW 127 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~-~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~W 127 (542)
..+|.|.+||+||.. ...|.+++++|+.+||++..++++++++||++...|.|+++|.+. ||+|++.+.
T Consensus 582 ~~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~l----gi~ii~E~~ 651 (652)
T TIGR00575 582 GSPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQEL----GIPIINEEE 651 (652)
T ss_pred CCCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHc----CCcEechhh
Confidence 457999999999965 478999999999999999999999999999999888999999995 899998653
No 27
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.70 E-value=2.4e-05 Score=84.57 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=66.3
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc--------cCCCCceEEEecCchHhHHhcCCCceecHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW--------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLK 268 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~--------~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WLlD 268 (542)
..+|+|+.|||....+ ++.|.-+|+++||.|...- ..++.+||=||..+..+... -+...|.|+||.|
T Consensus 325 kslF~glkFfl~reVP---resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-~gR~YvQPQWvfD 400 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVP---RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-IGRTYVQPQWVFD 400 (570)
T ss_pred HHHhhcceeeeeccCc---hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-eeeeeecchhhhh
Confidence 6799999999955555 5778999999999998651 13567899999887554432 2456789999999
Q ss_pred HHHhcCcCccCCcChH
Q 009146 269 TAKEKHVQRLVHISAD 284 (542)
Q Consensus 269 cik~g~llp~~~ys~d 284 (542)
|+..+.++|...|-+.
T Consensus 401 svNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 401 SVNARLLLPTEKYFPG 416 (570)
T ss_pred hccchhhccHhhhCCC
Confidence 9999999999888654
No 28
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=8.1e-05 Score=86.92 Aligned_cols=126 Identities=25% Similarity=0.392 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHHHHcccCCCCCcccccccccc
Q 009146 73 RKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEH 151 (542)
Q Consensus 73 r~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g~~Lde~~Y~l~~~~e~ 151 (542)
...+...++.+||.+.... ...||+|+... .+.|+..|+.. |++||+++||.+|++.|.++|+..|.+.+....
T Consensus 670 ~~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~----G~~ivT~~wL~s~~k~g~~~dek~yil~D~ekE 744 (896)
T KOG2043|consen 670 GKNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISS----GKPLVTPQWLVSSLKSGEKLDEKPYILHDEEKE 744 (896)
T ss_pred chhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhcc----CCcccchHHHHHHhhccccccCccccccCHHHH
Confidence 4457888889998877766 56799999876 57899999885 899999999999999999999999999764321
Q ss_pred CCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEE
Q 009146 152 GMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLV 231 (542)
Q Consensus 152 ~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vv 231 (542)
+.- ++ ++-..+. -.+. ..+|.|..|++.+...+ ....+..+|+..||.++
T Consensus 745 k~~--------gf------~l~ssl~--------------RAr~-~plL~g~~v~vtp~v~p-~~~~v~eiie~~ggnvv 794 (896)
T KOG2043|consen 745 KEF--------GF------RLKSSLL--------------RARA-DPLLEGINVHVTPSVTP-SPKTVVEIIEISGGNVV 794 (896)
T ss_pred hcc--------Cc------chhhHHH--------------Hhhc-chhhcCceEEecccccc-CcchhHHHHhhcCccee
Confidence 110 00 0000000 0001 36889999999655544 45789999999999999
Q ss_pred cc
Q 009146 232 NQ 233 (542)
Q Consensus 232 ds 233 (542)
..
T Consensus 795 ~~ 796 (896)
T KOG2043|consen 795 SD 796 (896)
T ss_pred cc
Confidence 87
No 29
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=9.6e-05 Score=77.77 Aligned_cols=89 Identities=12% Similarity=0.267 Sum_probs=68.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc---------cCCCCceEEEecCchHhHHhcCCCceecHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW---------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVL 267 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~---------~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WLl 267 (542)
..+|.|++||+...... ..|.-+|..+||.|+.+- ..+..+||-||..+-++.-. .+...|.|+||.
T Consensus 348 ~slFS~f~FyisreVp~---dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kv-egrtYiQPQw~f 423 (591)
T COG5163 348 KSLFSGFKFYISREVPG---DSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKV-EGRTYIQPQWLF 423 (591)
T ss_pred hhhhhceEEEEeccccc---hHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhh-cceeeechHHHH
Confidence 57999999999655554 567889999999998652 24667899999887554433 356778999999
Q ss_pred HHHHhcCcCccCCcChH--HHHHh
Q 009146 268 KTAKEKHVQRLVHISAD--LARQV 289 (542)
Q Consensus 268 Dcik~g~llp~~~ys~d--l~r~~ 289 (542)
|||..|.+.+...|.+. |.+|+
T Consensus 424 DsiNkG~l~~~~~Y~~G~~LPpHl 447 (591)
T COG5163 424 DSINKGKLACVENYCVGKRLPPHL 447 (591)
T ss_pred hhhccccchhhhhccccccCCCCc
Confidence 99999999999888654 33444
No 30
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.23 E-value=0.00057 Score=77.51 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=67.9
Q ss_pred CCCCCCcEEEEeCCCCHHH-HHHHHHHHHhCCCEEEccccCCCCceEEEe--cCch-HhH--HhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEEL-RNKVFEAATNEGATLVNQWFVGCGASYVVC--EEDS-VQK--YMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~-r~~L~~lI~~~GG~vvds~~l~~~vTHVVv--~~~s-~kk--~l~~~~~IVs~~WLlDci 270 (542)
..+|+|..||+-+|.+... +..|+++|..+||.++.+ +..+.||.|+ +..+ ..+ .+.....||+|.||+||.
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~n--v~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc 708 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQN--VGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCC 708 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEc--CCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHH
Confidence 6899999999988876654 689999999999999999 6777899886 3322 222 236789999999999999
Q ss_pred HhcCcCccCCc
Q 009146 271 KEKHVQRLVHI 281 (542)
Q Consensus 271 k~g~llp~~~y 281 (542)
..+.++|+.++
T Consensus 709 ~~~~l~p~~P~ 719 (881)
T KOG0966|consen 709 KKQRLLPWLPR 719 (881)
T ss_pred hhhhccccccH
Confidence 99999998764
No 31
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=97.23 E-value=0.00065 Score=78.85 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=68.3
Q ss_pred CCCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc--------hHhHHhcCCCceecHHHH
Q 009146 196 MNSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--------SVQKYMGHSNNLVTPVWV 266 (542)
Q Consensus 196 ~~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~--------s~kk~l~~~~~IVs~~WL 266 (542)
+...|.|++|.| .| ++. .+..++++|+.+||+++.+ . .++||+|+... .+++....+++||+..||
T Consensus 186 ~~kpL~G~~fvi-TGtl~~-sr~elK~~Ie~~GGkvsss--V-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L 260 (815)
T PLN03122 186 PGKPFSGMMISL-SGRLSR-THQYWKKDIEKHGGKVANS--V-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWL 260 (815)
T ss_pred cCCCcCCcEEEE-eCCCCC-CHHHHHHHHHHcCCEEccc--c-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHH
Confidence 356799999999 55 554 7889999999999999998 4 67889888652 244555689999999999
Q ss_pred HHHHHhcCcCccCCcCh
Q 009146 267 LKTAKEKHVQRLVHISA 283 (542)
Q Consensus 267 lDcik~g~llp~~~ys~ 283 (542)
++|++.+..+++..|..
T Consensus 261 ~d~i~~~k~~~~~~y~l 277 (815)
T PLN03122 261 IDSIEKQEAQPLEAYDV 277 (815)
T ss_pred HHHHhcCCcccchhhhh
Confidence 99999999999888754
No 32
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=97.06 E-value=0.001 Score=78.82 Aligned_cols=82 Identities=11% Similarity=0.064 Sum_probs=66.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc------hHhHHhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~------s~kk~l~~~~~IVs~~WLlDci 270 (542)
...|.|+.|.+...|+ .....+.+.|+.+||++... +...+||||+..+ ..++....+++||+..||.||+
T Consensus 391 ~~~l~~~~i~i~G~~~-~~~~~~k~~Ie~~GG~~s~~--v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~ 467 (981)
T PLN03123 391 SEFLGDLKVSIVGASK-EKVTEWKAKIEEAGGVFHAT--VKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCF 467 (981)
T ss_pred CCCcCCeEEEEecCCC-CcHHHHHHHHHhcCCEEeee--ccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHH
Confidence 4779999999933354 44588999999999999998 6888999988762 2333445689999999999999
Q ss_pred HhcCcCccCCc
Q 009146 271 KEKHVQRLVHI 281 (542)
Q Consensus 271 k~g~llp~~~y 281 (542)
..+..+|...|
T Consensus 468 ~~~~~~p~~~y 478 (981)
T PLN03123 468 KKKKKLPFDKY 478 (981)
T ss_pred hccccCcchhh
Confidence 99988887766
No 33
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=96.67 E-value=0.0017 Score=72.84 Aligned_cols=92 Identities=24% Similarity=0.366 Sum_probs=77.0
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
...+.|+|+.||+-||.+++...+....+..||.+.. -+..|||||+......---.+.. .+..+|..+|++=++
T Consensus 206 hrl~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s----~~~~~vk~ewfw~si 280 (850)
T KOG3524|consen 206 HRLGVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVS----SNQVHVKKEWFWVSI 280 (850)
T ss_pred hccccccCCeEeecCCcHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCcccccccccc----ccceeecccceEEEE
Confidence 4678999999999999999999999999999999999 55789999998764433222332 367899999999999
Q ss_pred HcccCCCCCcccccccc
Q 009146 133 RRNVRLSESLYTVKSID 149 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~~ 149 (542)
..|.+..|..|.+....
T Consensus 281 q~g~~a~e~~yl~~~~~ 297 (850)
T KOG3524|consen 281 QRGCCAIEDNYLLPTGK 297 (850)
T ss_pred ecchhccccceeccccc
Confidence 99999999999887654
No 34
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=96.49 E-value=0.0024 Score=69.55 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=63.3
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccC----------CCCceEEEEecCC-CHHHHHHHhcCCCCCcEEE
Q 009146 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDL----------HPQCTHLVVQSFG-GRKFEHALKHGSRNGLYIV 123 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~L----------s~~~THLVa~~~~-g~Ky~~A~k~g~~~gI~IV 123 (542)
-.+|+|++|.++.=. -|+.|.-+|...||.++.+. +...||=|+..+. ..+|. |-.-|
T Consensus 325 kslF~glkFfl~reV--PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v~---------gR~Yv 393 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREV--PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSVI---------GRTYV 393 (570)
T ss_pred HHHhhcceeeeeccC--chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCccceee---------eeeee
Confidence 369999999998643 35688899999999998773 1245898887763 23332 45569
Q ss_pred echHHHHHHHcccCCCCCccccc
Q 009146 124 TLGWFVDSVRRNVRLSESLYTVK 146 (542)
Q Consensus 124 ~p~WI~Dci~~g~~Lde~~Y~l~ 146 (542)
.|+||+||+.++.+++...|.+.
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~G 416 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFPG 416 (570)
T ss_pred cchhhhhhccchhhccHhhhCCC
Confidence 99999999999999999999875
No 35
>COG5275 BRCT domain type II [General function prediction only]
Probab=96.40 E-value=0.011 Score=58.26 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=66.3
Q ss_pred CCCCCCCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEEEechHH
Q 009146 51 VLPANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWF 128 (542)
Q Consensus 51 ~~~~~~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~IV~p~WI 128 (542)
|+.....+.|++|+|||..+ -+|..-..+|..+||+++...+..+|+||.++..| .|.+.+..+ +|+++..+=+
T Consensus 150 peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKql----kIkaidEegf 225 (276)
T COG5275 150 PEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQL----KIKAIDEEGF 225 (276)
T ss_pred CCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHh----CCccccHHHH
Confidence 45667799999999999776 78999999999999999999999999999998765 688888886 8999887766
Q ss_pred HHHH
Q 009146 129 VDSV 132 (542)
Q Consensus 129 ~Dci 132 (542)
..-|
T Consensus 226 ~~LI 229 (276)
T COG5275 226 DSLI 229 (276)
T ss_pred HHHH
Confidence 4444
No 36
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=96.37 E-value=0.0015 Score=73.63 Aligned_cols=93 Identities=20% Similarity=0.370 Sum_probs=80.5
Q ss_pred CCCCCCCCcEEEEeCCCh----hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHH
Q 009146 53 PANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWF 128 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~----~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI 128 (542)
.....++|+.+.++|+.+ .++..+-.....+|.....+++..+||+|+.+..+.|..+|... +.++||++.|+
T Consensus 437 ~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~---~~~~Vv~~~wl 513 (635)
T KOG0323|consen 437 LRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVS---GSAKVVNAAWL 513 (635)
T ss_pred hhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccc---cceeEechhHH
Confidence 345689999999999765 45567777788899999999999999999999999999999876 35999999999
Q ss_pred HHHHHcccCCCCCccccccc
Q 009146 129 VDSVRRNVRLSESLYTVKSI 148 (542)
Q Consensus 129 ~Dci~~g~~Lde~~Y~l~~~ 148 (542)
+.|+.++..+++..|.+...
T Consensus 514 ~~~~e~w~~v~ek~~~l~~~ 533 (635)
T KOG0323|consen 514 WRSLEKWGKVEEKLEPLDDD 533 (635)
T ss_pred HHHHHHhcchhccccccccc
Confidence 99999999999999988654
No 37
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=95.66 E-value=0.0082 Score=63.67 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=63.3
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEccc-----------CCCCceEEEEecCC-CHHHHHHHhcCCCCCcEE
Q 009146 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFG-GRKFEHALKHGSRNGLYI 122 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~-----------Ls~~~THLVa~~~~-g~Ky~~A~k~g~~~gI~I 122 (542)
..+|.|.+|.++.-.+ +.-|+-+|...||.+... .+..+||-||..+. ..||. |..-
T Consensus 348 ~slFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~~kve---------grtY 416 (591)
T COG5163 348 KSLFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMKNKVE---------GRTY 416 (591)
T ss_pred hhhhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhhhhhc---------ceee
Confidence 4799999999986433 236777899999998543 34578999998763 23432 6778
Q ss_pred EechHHHHHHHcccCCCCCccccc
Q 009146 123 VTLGWFVDSVRRNVRLSESLYTVK 146 (542)
Q Consensus 123 V~p~WI~Dci~~g~~Lde~~Y~l~ 146 (542)
|.|+||+||+..|.+.....|.+.
T Consensus 417 iQPQw~fDsiNkG~l~~~~~Y~~G 440 (591)
T COG5163 417 IQPQWLFDSINKGKLACVENYCVG 440 (591)
T ss_pred echHHHHhhhccccchhhhhcccc
Confidence 999999999999999999999875
No 38
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=0.032 Score=65.72 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCEEEccccCCCCceEEEecC-chHhHHh---cCCCceecHHHHHHHHHhcCcCccCCcC
Q 009146 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEE-DSVQKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 217 ~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~-~s~kk~l---~~~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
..+.+.++..||.+..+ ...+||+|+.. .+..+++ +.++.||++.||.+|++.|.++++..|-
T Consensus 671 ~~~k~~~k~lg~s~~ss---~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yi 737 (896)
T KOG2043|consen 671 KNYKLAKKFLGGSVASS---DSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYI 737 (896)
T ss_pred hhhhhHHhhccceeecc---cccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCcccc
Confidence 44888999999999988 78899999987 3444444 6889999999999999999999998883
No 39
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=93.68 E-value=0.088 Score=61.19 Aligned_cols=82 Identities=9% Similarity=0.192 Sum_probs=56.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEE------------------------EecCc--hH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYV------------------------VCEED--SV 250 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHV------------------------Vv~~~--s~ 250 (542)
..+|.||.|.|...+.. ....+..+..+||.|.+..+.. -.+|- ++.+. ..
T Consensus 923 kniFd~cvF~lTsa~~s--d~~~r~s~e~~gg~vle~gl~~-~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~Rt 999 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS--DSASRPSMEKHGGLVLEKGLMN-LFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYRT 999 (1176)
T ss_pred cchhcceeEEEeccccc--hhhhhhhhhccCChhhhccccc-cccccccCCcchHHhhhHHhhhccccceeEeehhhhHH
Confidence 48999999999444443 3556677777999988774211 12222 11111 24
Q ss_pred hHHh---cCCCceecHHHHHHHHHhcCcCccCCc
Q 009146 251 QKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 251 kk~l---~~~~~IVs~~WLlDcik~g~llp~~~y 281 (542)
.||+ +.+++.|++.||.+|++.+++++..+|
T Consensus 1000 ~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~Y 1033 (1176)
T KOG3548|consen 1000 HKYLEALARGIPCVHNTFIQACGEQNRCVDYTDY 1033 (1176)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHhccccccchhh
Confidence 5565 689999999999999999998886555
No 40
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=93.20 E-value=0.23 Score=57.26 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=59.8
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDci 270 (542)
...|.|.+|.|...|+.-.|+.++++|+.+||++.++ .+.++++||++.. .++|....+++|++.+.+++-+
T Consensus 591 ~~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ss--VSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~~l 665 (669)
T PRK14350 591 NSFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTC--VTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKSYV 665 (669)
T ss_pred CCccCCcEEEEecccCCCCHHHHHHHHHHcCCEEecc--ccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHHHh
Confidence 3569999999943477667899999999999999999 7999999999863 4566666889999999888744
No 41
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=92.86 E-value=0.3 Score=51.28 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc-----hHhHHhcCCCceecHHHHHHHH
Q 009146 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-----SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 198 ~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~-----s~kk~l~~~~~IVs~~WLlDci 270 (542)
.+|.|.+|.|...++ ..|+.+.++|..+||++.++ .+.++++||+++. +.+|....+++|++..=+++-+
T Consensus 231 ~l~~g~~~v~TG~l~-~~R~e~~~~~~~~G~~v~~s--Vs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~ll 305 (313)
T PRK06063 231 PLVQGMRVALSAEVS-RTHEELVERILHAGLAYSDS--VDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLELL 305 (313)
T ss_pred cccCCCEEEEecCCC-CCHHHHHHHHHHcCCEecCc--cccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHHHH
Confidence 468999999954576 57899999999999999999 7999999999862 3555556889999877766654
No 42
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=92.69 E-value=0.27 Score=51.34 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc------------hHhHHh-----cCCCc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------------SVQKYM-----GHSNN 259 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~------------s~kk~l-----~~~~~ 259 (542)
...|.|.+|.|...|..-.|+.+.++|+.+||.+.++ .+.++++||+++. ++++.. +.++.
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~s--Vs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSS--VTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCC--cccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 3569999999944476567899999999999999999 7999999999842 233332 34888
Q ss_pred eecHHHHHHHHH
Q 009146 260 LVTPVWVLKTAK 271 (542)
Q Consensus 260 IVs~~WLlDcik 271 (542)
|++.+=+++-++
T Consensus 296 ii~E~~f~~l~~ 307 (309)
T PRK06195 296 FLNEEEFLQKCK 307 (309)
T ss_pred EecHHHHHHHHh
Confidence 998766555444
No 43
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=92.37 E-value=0.33 Score=56.02 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHHHh
Q 009146 198 STLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 198 ~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDcik~ 272 (542)
..|.|.+|.| +| ++.-.|+.+.++|+.+||.+.++ .+.++++||+++. .+++....++.|++..-+++.+.+
T Consensus 589 ~~~~g~~~v~-TG~l~~~~R~e~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~l~~ 664 (665)
T PRK07956 589 VDLAGKTVVL-TGTLEQLSRDEAKEKLEALGAKVSGS--VSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRLLGE 664 (665)
T ss_pred CCccccEEEE-eCCCCCCCHHHHHHHHHHcCCEEeCc--ccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHHHhc
Confidence 3599999999 65 55447899999999999999999 7999999999874 455555689999999998887754
No 44
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=91.76 E-value=0.46 Score=55.05 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=60.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc----hHhHHhcCCCceecHHHHHHHHHh
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~----s~kk~l~~~~~IVs~~WLlDcik~ 272 (542)
...|.|.+|+|...+..-.|+.+.++|+.+||++.++ .+.++++||+++. .+++....++.|++.+-+++-+++
T Consensus 607 ~~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~s--Vs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~ll~~ 684 (689)
T PRK14351 607 GDALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGS--VSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEELLAE 684 (689)
T ss_pred CCCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCC--cCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHHHHh
Confidence 4579999999933465556899999999999999999 7999999999863 345555688999999999887765
No 45
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=89.61 E-value=0.79 Score=52.42 Aligned_cols=71 Identities=18% Similarity=0.198 Sum_probs=59.7
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHH
Q 009146 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 198 ~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDci 270 (542)
..|.|.+|.+...++.-.|+..+.+|+..||+|..+ .+.++++||++.. .+.|....+++|.+.+++++-+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~S--VSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ll 666 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGS--VSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLALL 666 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEece--ecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHHhh
Confidence 789999999955577777899999999999999999 7888899999884 4566667899999999887643
No 46
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=89.05 E-value=0.69 Score=53.35 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHH
Q 009146 197 NSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPV 264 (542)
Q Consensus 197 ~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~ 264 (542)
...|.|.+|+| +| ++.-.|+.+.++|+.+||++.++ .+.++++||+++. .+++....++.|++..
T Consensus 582 ~~~l~gk~~v~-TG~l~~~~R~~~~~~i~~~G~~v~~s--Vs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E~ 650 (652)
T TIGR00575 582 GSPLAGKTFVL-TGTLSQMSRDEAKELLENLGGKVASS--VSKKTDYVIAGEKAGSKLAKAQELGIPIINEE 650 (652)
T ss_pred CCCccCcEEEE-eccCCCCCHHHHHHHHHHcCCEEeCC--cCCCccEEEECCCCChHHHHHHHcCCcEechh
Confidence 35699999999 65 66557899999999999999999 7999999999873 4555556788888764
No 47
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=84.22 E-value=2.9 Score=44.98 Aligned_cols=75 Identities=23% Similarity=0.273 Sum_probs=65.4
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCC--CHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG--GRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~--g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
++-+|+.|.|++=...++..|.+.+...|=.|+..+++.+.-|||.... .-|-.+|... ||++|+-.=+.+.+.
T Consensus 293 ~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~----gipl~~d~~fl~~~~ 368 (377)
T PRK05601 293 GLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRK----GIPLLSDVAFLAAVE 368 (377)
T ss_pred ccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhc----CCCccCHHHHHHHHH
Confidence 4778999999998889999999999999999999999999999998764 4577778774 899999888888776
Q ss_pred c
Q 009146 134 R 134 (542)
Q Consensus 134 ~ 134 (542)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 3
No 48
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.76 E-value=3.7 Score=47.23 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred EEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc------hHhHHh---cCCCceecHHHHHHHHHhcCc
Q 009146 205 MYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLKTAKEKHV 275 (542)
Q Consensus 205 Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~------s~kk~l---~~~~~IVs~~WLlDcik~g~l 275 (542)
+.+-.+.++.+.+.|.+.++. ++...| ...+||||..-+ ...+++ .++..|++..|++.|++.+++
T Consensus 480 ~~~~s~l~p~ek~~v~~~a~~---t~~k~~--~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~ 554 (684)
T KOG4362|consen 480 VLLVSGLTPSEKQLVEKFAVD---TISKFW--IEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRKW 554 (684)
T ss_pred eeeeccCCcchHHHHHHHHHH---HHhhcc--CCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcCC
Confidence 333378888888888888877 666664 888999998652 234443 488999999999999999999
Q ss_pred CccCCcCh
Q 009146 276 QRLVHISA 283 (542)
Q Consensus 276 lp~~~ys~ 283 (542)
+++.+|..
T Consensus 555 ~~eepfEl 562 (684)
T KOG4362|consen 555 VSEEPFEL 562 (684)
T ss_pred CCCCCeeE
Confidence 99988854
No 49
>COG5275 BRCT domain type II [General function prediction only]
Probab=67.36 E-value=19 Score=36.00 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc----hHhHHhcCCCceecHHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 197 ~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~----s~kk~l~~~~~IVs~~WLlDcik 271 (542)
...|.|..|.| .| +..-.|..-..+|..+||.|... +....+.||.++. .+.+....+++++..+=+..-|+
T Consensus 154 ~~cL~G~~fVf-TG~l~TlsR~~a~~lvk~yGgrvT~~--pSskTtflvlGdnaGP~K~ekiKqlkIkaidEegf~~LI~ 230 (276)
T COG5275 154 RECLKGKVFVF-TGDLKTLSRDDAKTLVKVYGGRVTAV--PSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDEEGFDSLIK 230 (276)
T ss_pred cccccccEEEE-ecccccccchhHHHHHHHhCCeeecc--cccceeEEEecCCCChHHHHHHHHhCCccccHHHHHHHHh
Confidence 56789999999 55 55567888899999999999988 6888899999874 34444467888888877766554
No 50
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=66.50 E-value=7.7 Score=45.69 Aligned_cols=83 Identities=12% Similarity=0.176 Sum_probs=62.1
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHhc-CCCceecHHHHHHHHHhcCc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMG-HSNNLVTPVWVLKTAKEKHV 275 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l~-~~~~IVs~~WLlDcik~g~l 275 (542)
...|.|..+|. .|...+..+++++.-..+||...... .....+||++..-.....-+ ......+++|+.+|+++|..
T Consensus 45 ~s~fs~is~~~-ngs~~e~~nelk~~~~~~t~~~~~~~-~rs~T~~ii~~~l~a~~vk~~~~~~~~~~e~iie~~~~~~~ 122 (1016)
T KOG2093|consen 45 SSSFSGISISV-NGSTDESANELKLQNMFHTGASAASY-ERSGTENIIAQGLPADLVKGFTIPKHISIEWIIECCENGMD 122 (1016)
T ss_pred cceeeeeeecc-CCccccchHHHhhhhhhccccccccc-ccccceeeecccchHHHhccccchhhhcHHHHHHHHhccCc
Confidence 67899999999 77766777888999999999988442 67788999997721111112 45677889999999999977
Q ss_pred CccCCc
Q 009146 276 QRLVHI 281 (542)
Q Consensus 276 lp~~~y 281 (542)
+-.-+|
T Consensus 123 ~~~~~~ 128 (1016)
T KOG2093|consen 123 VGYYPY 128 (1016)
T ss_pred cccccc
Confidence 654433
No 51
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=63.68 E-value=4.2 Score=46.60 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=59.0
Q ss_pred CCCCCCcEEEEeCCCC----HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHH----hcCCCceecHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVS----EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY----MGHSNNLVTPVWVLK 268 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs----~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~----l~~~~~IVs~~WLlD 268 (542)
...+.||.+.+ +|+. +......-......|+..+.. ....+||+|.......+. ....+.||.+.|++.
T Consensus 439 ~~v~~~~~~vf-Sg~~P~~~~~~~s~~~~~~~~~g~vs~~~--~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~~~wl~~ 515 (635)
T KOG0323|consen 439 TKVLKGSQIVF-SGLHPTGSTDESADILGVAQQLGAVSAPD--VSDKTTHLIAANAGTKKVYKAVVSGSAKVVNAAWLWR 515 (635)
T ss_pred hHHhhccceee-cccccCcCCcchhhhhhhhhcccceeccc--ccchhhhHHhhccCcceeeccccccceeEechhHHHH
Confidence 45678888888 6532 223345556677788888877 688999999877533222 235589999999999
Q ss_pred HHHhcCcCccCCcChH
Q 009146 269 TAKEKHVQRLVHISAD 284 (542)
Q Consensus 269 cik~g~llp~~~ys~d 284 (542)
|+.+..-+....|..+
T Consensus 516 ~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 516 SLEKWGKVEEKLEPLD 531 (635)
T ss_pred HHHHhcchhccccccc
Confidence 9988766666555443
No 52
>COG4840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.66 E-value=12 Score=30.57 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHh--ccCCHHHHHHH
Q 009146 458 CLQVLDYIYEFYQ--ESMSAHEVESA 481 (542)
Q Consensus 458 ~~~~~~~i~~~y~--e~~~~~e~~~a 481 (542)
..+=|..||+|-+ ||+|+.||.+-
T Consensus 37 ~~edLtdiy~mvkkkenfSpsEmqai 62 (71)
T COG4840 37 NYEDLTDIYDMVKKKENFSPSEMQAI 62 (71)
T ss_pred cHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 3456889999998 99999999864
No 53
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=56.76 E-value=16 Score=31.58 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHHHHhh
Q 009146 457 TCLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRLRAVY 496 (542)
Q Consensus 457 ~~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~r~~~ 496 (542)
.+.+||.++|..|-+++.+.||..+++.| ..-++.+.
T Consensus 10 ~R~~vl~~L~~~yp~~~~~~eIar~v~~~---~snV~GaL 46 (90)
T PF07381_consen 10 VRKKVLEYLCSIYPEPAYPSEIARSVGSD---YSNVLGAL 46 (90)
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHCCC---HHHHHHHH
Confidence 57899999999999999999999999999 77777776
No 54
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=43.93 E-value=20 Score=39.97 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCC
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTD 485 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~ 485 (542)
-+++|++||.||+||||-+.+.-.+|-.
T Consensus 374 i~~~l~~I~~h~se~LtL~~la~~f~in 401 (475)
T COG4753 374 IQKVLDYIHKHFSENLTLKDLAKVFHIN 401 (475)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhCcC
Confidence 4689999999999999999999999876
No 55
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=41.50 E-value=24 Score=31.78 Aligned_cols=40 Identities=20% Similarity=0.312 Sum_probs=35.1
Q ss_pred CCCccHHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 453 DNGFTCLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 453 ~~g~~~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
.......+++++|..+|.++++-+||.+.+|...+|-.|+
T Consensus 6 ~~~~~i~~~~~~I~~~~~~~~sl~~lA~~~g~S~~~l~r~ 45 (127)
T PRK11511 6 TDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRM 45 (127)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHCcCHHHHHHH
Confidence 3455678999999999999999999999999998887776
No 56
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=40.32 E-value=9.2 Score=31.14 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=8.6
Q ss_pred EEEecCCcceeeccCcc
Q 009146 8 EVVSSKGCSRLFLGSVP 24 (542)
Q Consensus 8 ~~~~~~~~~~~~~~s~~ 24 (542)
++|..+||+|+||++|-
T Consensus 19 ~pv~l~~CeH~fCs~Ci 35 (65)
T PF14835_consen 19 EPVCLGGCEHIFCSSCI 35 (65)
T ss_dssp S-B---SSS--B-TTTG
T ss_pred CCceeccCccHHHHHHh
Confidence 46788999999999986
No 57
>COG4844 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.38 E-value=27 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=17.3
Q ss_pred CCccHHHHHHHHHHHHhcc
Q 009146 454 NGFTCLQVLDYIYEFYQES 472 (542)
Q Consensus 454 ~g~~~~~~~~~i~~~y~e~ 472 (542)
-|=|..|++++||.|-.||
T Consensus 57 ~Get~eeLv~NIY~~i~En 75 (78)
T COG4844 57 EGETPEELVENIYTFIEEN 75 (78)
T ss_pred cCCCHHHHHHHHHHHHhcc
Confidence 5789999999999999987
No 58
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=37.52 E-value=35 Score=29.41 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||...+|...||-.|+
T Consensus 7 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~ 41 (107)
T PRK10219 7 IQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRM 41 (107)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHH
Confidence 46899999999999999999999999999988776
No 59
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=37.03 E-value=43 Score=27.02 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhc---cCCHHHHHHHhcCCCc
Q 009146 459 LQVLDYIYEFYQE---SMSAHEVESAIHTDSR 487 (542)
Q Consensus 459 ~~~~~~i~~~y~e---~~~~~e~~~a~~~~~~ 487 (542)
.+||++|.+|+++ +-|-.||..+++--|.
T Consensus 9 ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~ 40 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYPPTVREIAEALGLKST 40 (65)
T ss_dssp HHHHHHHHHHHHHHSS---HHHHHHHHTSSSH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCh
Confidence 4699999999997 4577899999987653
No 60
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=35.04 E-value=38 Score=35.11 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
.++++++|.+.|.++++.++|.+++|-..||--|+
T Consensus 193 i~~~~~~i~~~~~~~~tl~~lA~~~~~S~~~l~r~ 227 (302)
T PRK10371 193 VSQMLGFIAENYDQALTINDVAEHVKLNANYAMGI 227 (302)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999999999999998877776
No 61
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=32.03 E-value=36 Score=25.10 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=15.3
Q ss_pred HHHHHHhccCCHHHHHHHhcCC
Q 009146 464 YIYEFYQESMSAHEVESAIHTD 485 (542)
Q Consensus 464 ~i~~~y~e~~~~~e~~~a~~~~ 485 (542)
.|.++|+++||..||...|+-+
T Consensus 12 ~I~~l~~~G~s~~~IA~~lg~s 33 (44)
T PF13936_consen 12 QIEALLEQGMSIREIAKRLGRS 33 (44)
T ss_dssp HHHHHHCS---HHHHHHHTT--
T ss_pred HHHHHHHcCCCHHHHHHHHCcC
Confidence 3889999999999999999754
No 62
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=31.98 E-value=1.2e+02 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=29.6
Q ss_pred EEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceE
Q 009146 62 VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTH 97 (542)
Q Consensus 62 vIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~TH 97 (542)
-|+|+||++...+.+.+-....|.....+++.....
T Consensus 3 wI~V~Gf~~~~~~~vl~~F~~fGeI~~~~~~~~~~~ 38 (53)
T PF14605_consen 3 WISVSGFPPDLAEEVLEHFASFGEIVDIYVPESTNW 38 (53)
T ss_pred EEEEEeECchHHHHHHHHHHhcCCEEEEEcCCCCcE
Confidence 489999999999999888889999988888843333
No 63
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=31.53 E-value=34 Score=37.04 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=46.5
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF 103 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~ 103 (542)
....+|....+..-|-++..+..+.+-|-.+||.+.+.++..+||+|+...
T Consensus 118 ~Y~~aFp~f~fY~dn~s~~~khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 118 TYCCAFPAFKFYKDNKSGKRKHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred hhhcccchhhhhhcCCCHHHHHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 456789999999999999888899999999999999999999999999865
No 64
>PF15101 DUF4557: Domain of unknown function (DUF4557)
Probab=31.06 E-value=1.2e+02 Score=30.22 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=48.1
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC---c------hHhHHhcCCCceecHHHHHHHH
Q 009146 200 LSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---D------SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 200 F~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~---~------s~kk~l~~~~~IVs~~WLlDci 270 (542)
|+|++-+|....+.. ++.+=..+||++++- ..+.++.-.+ + ....|+..+.+|-++.||..|.
T Consensus 1 F~~q~aWFs~SVs~~----~~~~Wv~~GG~isd~----~~AdFLFS~DAshpDT~~iy~S~dY~~d~aTVFha~yl~a~~ 72 (212)
T PF15101_consen 1 FQGQRAWFSGSVSQD----LRQFWVKEGGTISDW----DAADFLFSCDASHPDTARIYQSLDYIEDRATVFHASYLSAVA 72 (212)
T ss_pred CCCceeeeecCcchH----HHHHHHhcCCccCCh----hhcceeeecCCCCcchHhhhhhhhhhhcCeeeeeHHHHHHHh
Confidence 788888885556654 566677899999983 2234444433 1 2355677899999999999999
Q ss_pred HhcCc
Q 009146 271 KEKHV 275 (542)
Q Consensus 271 k~g~l 275 (542)
.+...
T Consensus 73 na~s~ 77 (212)
T PF15101_consen 73 NAESK 77 (212)
T ss_pred hhhhc
Confidence 87654
No 65
>COG5573 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.30 E-value=67 Score=29.87 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=43.0
Q ss_pred EEeeccchhcccCCCCceeecCCCccHHHHHHHHHHHHh----ccCCHHHHHHHhcCCCcc
Q 009146 432 TILFPVDRFAEMGPSSRTYFSDNGFTCLQVLDYIYEFYQ----ESMSAHEVESAIHTDSRH 488 (542)
Q Consensus 432 t~l~p~d~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~y~----e~~~~~e~~~a~~~~~~~ 488 (542)
|+..|+--.+|.+..=+ -.-|++..++.+.|++||. .+++.+||..|-.--.||
T Consensus 39 ~~VVs~QVl~Et~~vl~---RK~~~s~~~i~~lie~~~~~~~Iv~~t~~~~~~a~~l~~ry 96 (142)
T COG5573 39 TYVVSVQVLNETCYVLK---RKYGASEQLIQTLIEAFRRQCRIVHLTHEEVVQASRLAPRY 96 (142)
T ss_pred eEEEehHHHHHHHHHHH---HhcCCcHHHHHHHHHHHHhhceeecCCHHHHHHHhcccccc
Confidence 45667777777655421 2479999999999999998 899999999998777777
No 66
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=29.51 E-value=98 Score=25.54 Aligned_cols=37 Identities=22% Similarity=0.343 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHh--ccCCHHHHHHHh---cCCCcchHHHHHhh
Q 009146 458 CLQVLDYIYEFYQ--ESMSAHEVESAI---HTDSRHSDRLRAVY 496 (542)
Q Consensus 458 ~~~~~~~i~~~y~--e~~~~~e~~~a~---~~~~~~~~~~r~~~ 496 (542)
...||.+|-+-+. +..|+.||++.| |.| ||-..|.+-
T Consensus 13 r~~iL~~l~~~f~~g~~y~E~EVN~~L~~~~~D--~a~LRR~LV 54 (71)
T PF09860_consen 13 RLVILEYLASRFEPGREYSEKEVNEILKRFFDD--YATLRRYLV 54 (71)
T ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHHHHccc--HHHHHHHHH
Confidence 5678999988875 679999999988 555 666666665
No 67
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=27.68 E-value=59 Score=33.06 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcc-CCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQES-MSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~-~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.|+ ++.++|.+++|--.||--|+
T Consensus 199 l~~~~~~I~~~l~~~~ls~~~lA~~~giS~r~L~r~ 234 (302)
T PRK09685 199 FQKVVALIDQSIQEEILRPEWIAGELGISVRSLYRL 234 (302)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHCCCHHHHHHH
Confidence 348999999999997 99999999999998887766
No 68
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.74 E-value=52 Score=32.32 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=39.4
Q ss_pred eeccchhcccCCCCceeecCCCccHHHHHHHHHHHHhccCCHHHHHHHh
Q 009146 434 LFPVDRFAEMGPSSRTYFSDNGFTCLQVLDYIYEFYQESMSAHEVESAI 482 (542)
Q Consensus 434 l~p~d~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~y~e~~~~~e~~~a~ 482 (542)
|+=+|-.|.++|.+--.++=++|=|.-||| +||.+.|+.+|--.-|
T Consensus 115 L~~iDyla~~~~vpy~~hGy~~~f~~sIlD---r~Y~pdmt~eea~~lm 160 (200)
T KOG0177|consen 115 LYYIDYLATLVSVPYAAHGYGSYFCLSILD---RYYKPDMTIEEALDLM 160 (200)
T ss_pred eeeehhhhhcccCCcccccchhhhhHHHHH---hhhCCCCCHHHHHHHH
Confidence 456899999999999999999999999998 6999999998854443
No 69
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=26.20 E-value=47 Score=36.08 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=42.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE 247 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~ 247 (542)
...|....||+ .+.++..+..+++-+...||.|..- .+..+||++.-.
T Consensus 120 ~~aFp~f~fY~-dn~s~~~khRvk~gf~~LGa~v~tf--F~~~VThfiTrR 167 (468)
T COG5067 120 CCAFPAFKFYK-DNKSGKRKHRVKEGFCELGAVVFTF--FEEHVTHFITRR 167 (468)
T ss_pred hcccchhhhhh-cCCCHHHHHHHHHHHHHhhhhhhee--eccceEEEEEee
Confidence 56789999999 7788888888999999999999987 588999999865
No 70
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=25.38 E-value=76 Score=24.90 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHh
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAI 482 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~ 482 (542)
..++.+.+..-|.+.++.+|+++.+
T Consensus 2 ~~~~~~~~~~~y~~~ft~~El~~i~ 26 (64)
T PF09832_consen 2 PEKMIDQMAPIYAEHFTEEELDAIL 26 (64)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 4678899999999999999998876
No 71
>PRK13502 transcriptional activator RhaR; Provisional
Probab=25.32 E-value=64 Score=32.49 Aligned_cols=35 Identities=3% Similarity=-0.053 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.|+++.++|.+++|--.+|--|+
T Consensus 178 ~~~~~~~I~~~~~~~~~~~~lA~~~~iS~~~L~r~ 212 (282)
T PRK13502 178 LDKLITALANSLECPFALDAFCQQEQCSERVLRQQ 212 (282)
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999999999999998888776
No 72
>PRK13500 transcriptional activator RhaR; Provisional
Probab=22.98 E-value=72 Score=33.04 Aligned_cols=35 Identities=3% Similarity=-0.009 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.|+++.+++.+.+|--.||--|+
T Consensus 208 l~~i~~yI~~~~~e~isl~~lA~~~~iS~~~L~r~ 242 (312)
T PRK13500 208 LDKLITRLAASLKSPFALDKFCDEASCSERVLRQQ 242 (312)
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCcCHHHHHHH
Confidence 47899999999999999999999999998887776
No 73
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=22.49 E-value=40 Score=30.71 Aligned_cols=45 Identities=33% Similarity=0.644 Sum_probs=30.1
Q ss_pred eecceeEEeeccchhcccCCCCceeecC-----------C-CccHHHHHHHHHHHHh
Q 009146 426 FKNHFLTILFPVDRFAEMGPSSRTYFSD-----------N-GFTCLQVLDYIYEFYQ 470 (542)
Q Consensus 426 ~~~~~lt~l~p~d~~~~~~~~~~~~~~~-----------~-g~~~~~~~~~i~~~y~ 470 (542)
|||.|+-+=+|.=.|+|=+|...+=+.. + .+|.+|+++++.+-|+
T Consensus 1 yrN~F~NLAlP~~~fsEP~~~~k~k~~~~~~T~WDr~~v~~~~Tl~~li~~~~~~~~ 57 (125)
T PF09358_consen 1 YRNSFLNLALPFFSFSEPIPAPKTKYNDKEWTLWDRIEVNGDMTLQELIDYFKEKYG 57 (125)
T ss_dssp --EEEEETTTTEEEEE---B--EEEETTEEETTT-EEEEES--BHHHHHHHHHHTTS
T ss_pred CccEEEEcCccceeeeeccCCCceEecCccccceeEEEEcCCCCHHHHHHHHHHHhC
Confidence 7999999999999999988887762211 3 4999999999998886
No 74
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=22.12 E-value=1.3e+02 Score=25.42 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=24.6
Q ss_pred CCCccHHHHHHHHHHHHhccCCHHHHHH
Q 009146 453 DNGFTCLQVLDYIYEFYQESMSAHEVES 480 (542)
Q Consensus 453 ~~g~~~~~~~~~i~~~y~e~~~~~e~~~ 480 (542)
+++-+|.++++.||.|--..|++.|-.+
T Consensus 4 ~~~~~C~e~~~~l~~ylDgeL~~~e~~~ 31 (84)
T TIGR02949 4 HGKTDCDEVIDHLYEFLDGEMGPSDREQ 31 (84)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHH
Confidence 5778999999999999999999988543
No 75
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=21.65 E-value=1e+02 Score=29.65 Aligned_cols=30 Identities=27% Similarity=0.274 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcc---CCHHHHHHHhcCCCc
Q 009146 458 CLQVLDYIYEFYQES---MSAHEVESAIHTDSR 487 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~---~~~~e~~~a~~~~~~ 487 (542)
-.+||++|..||+++ .+-.||..+++-+|+
T Consensus 8 q~~iL~~l~~~~~~~~~~~~~~ela~~~~~~s~ 40 (199)
T TIGR00498 8 QQEVLDLIRAHIESTGYPPSIREIARAVGLRSP 40 (199)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHhCCCCh
Confidence 357999999999865 788899999999844
No 76
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=21.40 E-value=1.1e+02 Score=21.39 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.8
Q ss_pred cHHHHHHHHHHHHhccCCHHHHHHHhc
Q 009146 457 TCLQVLDYIYEFYQESMSAHEVESAIH 483 (542)
Q Consensus 457 ~~~~~~~~i~~~y~e~~~~~e~~~a~~ 483 (542)
.|..++..|..+-+.|-+.+||..+++
T Consensus 6 ~C~~~v~~i~~~l~~~~t~~~I~~~l~ 32 (39)
T PF05184_consen 6 ICKFVVKEIEKLLKNNKTEEEIKKALE 32 (39)
T ss_dssp HHHHHHHHHHHHHHSTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 588999999999999999999999874
No 77
>PRK13501 transcriptional activator RhaR; Provisional
Probab=21.28 E-value=97 Score=31.46 Aligned_cols=36 Identities=6% Similarity=-0.027 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 457 TCLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 457 ~~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
....++++|.++|.|+++-+|+.+++|-.-+|--|+
T Consensus 177 ~~~~i~~~I~~~~~e~~sl~~lA~~~~lS~~~l~r~ 212 (290)
T PRK13501 177 QLDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQL 212 (290)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHCcCHHHHHHH
Confidence 456799999999999999999999999987776665
No 78
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=21.26 E-value=1.7e+02 Score=23.47 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHHHHhhhhhccccccccee
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRLRAVYASKETAECGYVTF 509 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 509 (542)
.++||.++...=.+.++..||..+++-+.+.+.|+ +|.=+ ..|+|..
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~--L~~L~---~~G~V~~ 54 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLGLPKKEVNRV--LYSLE---KKGKVCK 54 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHH--HHHHH---HCCCEEe
Confidence 34555555544112399999999999998876666 66433 6787755
No 79
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=21.12 E-value=93 Score=32.22 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=30.9
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCC
Q 009146 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP 93 (542)
Q Consensus 59 ~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~ 93 (542)
..++|..|||++++++.|.++.+..+..+..|++=
T Consensus 94 ~~lVIGTTGf~~e~~~~l~~~a~~v~vv~a~NfSi 128 (266)
T COG0289 94 KPLVIGTTGFTEEQLEKLREAAEKVPVVIAPNFSL 128 (266)
T ss_pred CCeEEECCCCCHHHHHHHHHHHhhCCEEEeccchH
Confidence 45888999999999999999999988888888863
No 80
>PRK13503 transcriptional activator RhaS; Provisional
Probab=20.78 E-value=95 Score=31.01 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
.++++++|+++|.+.++-++|..++|-..+|--|+
T Consensus 173 i~~~~~~I~~~~~~~~tl~~lA~~~~lS~~~l~r~ 207 (278)
T PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQ 207 (278)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCCCHHHHHHH
Confidence 67899999999999999999999999997776655
No 81
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=20.26 E-value=72 Score=27.28 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhh
Q 009146 323 QEKRQQTVNLAKNGVRSRRSR 343 (542)
Q Consensus 323 ~~~R~~~~~~ak~~vr~~~~~ 343 (542)
+++|.++|+.||..+|..+++
T Consensus 66 ~~~rr~~LE~AK~eLR~~fGr 86 (86)
T PF11373_consen 66 PKERRAVLERAKDELRKAFGR 86 (86)
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999998874
Done!