Query 009146
Match_columns 542
No_of_seqs 211 out of 1318
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3olc_X DNA topoisomerase 2-bin 100.0 5.5E-28 1.9E-32 247.4 21.0 180 54-284 102-285 (298)
2 3ii6_X DNA ligase 4; XRCC4, NH 99.9 1.3E-26 4.5E-31 233.1 15.8 221 53-282 6-262 (263)
3 1l0b_A BRCA1; TANDEM-BRCT, thr 99.9 2.9E-25 9.9E-30 217.1 17.1 193 56-283 3-212 (229)
4 2nte_A BARD-1, BRCA1-associate 99.9 3.1E-25 1.1E-29 214.9 15.9 181 59-279 1-209 (210)
5 1t15_A Breast cancer type 1 su 99.9 8.4E-25 2.9E-29 211.0 18.1 191 59-283 3-210 (214)
6 3u3z_A Microcephalin; DNA repa 99.9 1.2E-24 4.2E-29 210.3 14.8 183 60-282 11-196 (199)
7 1kzy_C Tumor suppressor P53-bi 99.9 1.6E-22 5.3E-27 203.1 16.9 192 52-281 10-249 (259)
8 1z56_C DNA ligase IV; DNA repa 99.9 5.1E-24 1.7E-28 213.3 5.0 219 54-283 2-261 (264)
9 2etx_A Mediator of DNA damage 99.9 1.2E-22 4.1E-27 197.3 12.6 188 53-281 5-199 (209)
10 3sqd_A PAX-interacting protein 99.9 1.1E-21 3.8E-26 192.3 13.5 192 53-281 9-216 (219)
11 3al2_A DNA topoisomerase 2-bin 99.8 2E-20 6.8E-25 185.3 18.2 204 56-282 5-227 (235)
12 3l46_A Protein ECT2; alternati 99.8 1.7E-21 5.9E-26 172.0 6.5 91 53-147 17-107 (112)
13 2vxb_A DNA repair protein RHP9 99.8 5E-20 1.7E-24 183.0 16.3 196 56-277 1-240 (241)
14 2cou_A ECT2 protein; BRCT doma 99.8 1.5E-20 5.1E-25 165.1 6.2 91 53-147 8-98 (109)
15 3l3e_A DNA topoisomerase 2-bin 99.8 8.8E-19 3E-23 152.8 10.1 91 53-147 11-104 (107)
16 2d8m_A DNA-repair protein XRCC 99.8 2.5E-18 8.5E-23 155.1 11.4 92 53-148 18-109 (129)
17 3l41_A BRCT-containing protein 99.7 2.5E-18 8.6E-23 168.7 8.4 193 58-285 6-216 (220)
18 4id3_A DNA repair protein REV1 99.7 3.9E-18 1.3E-22 143.5 8.4 87 53-145 3-91 (92)
19 2ebw_A DNA repair protein REV1 99.7 8.7E-18 3E-22 143.4 9.0 88 53-146 8-96 (97)
20 3olc_X DNA topoisomerase 2-bin 99.6 2.9E-16 9.9E-21 160.6 10.6 93 53-149 195-288 (298)
21 3pa6_A Microcephalin; BRCT dom 99.6 4.9E-16 1.7E-20 136.1 10.2 93 54-150 4-100 (107)
22 3pc6_A DNA repair protein XRCC 99.6 7.6E-15 2.6E-19 127.9 11.4 92 53-146 3-95 (104)
23 1wf6_A Similar to S.pombe -RAD 99.6 9.5E-15 3.2E-19 132.1 12.2 93 53-147 36-128 (132)
24 1wf6_A Similar to S.pombe -RAD 99.5 2.8E-14 9.6E-19 129.0 11.0 96 185-283 26-126 (132)
25 3ef1_A RNA polymerase II subun 99.5 1E-14 3.5E-19 155.8 9.3 89 54-145 349-441 (442)
26 3ef0_A RNA polymerase II subun 99.5 2.2E-14 7.5E-19 150.8 9.5 88 55-145 280-371 (372)
27 4id3_A DNA repair protein REV1 99.5 3.6E-14 1.2E-18 119.1 8.3 83 197-282 5-90 (92)
28 3l46_A Protein ECT2; alternati 99.5 5.3E-14 1.8E-18 124.1 7.9 85 196-283 18-105 (112)
29 2cou_A ECT2 protein; BRCT doma 99.5 4.1E-14 1.4E-18 124.0 6.6 85 196-283 9-96 (109)
30 2ebw_A DNA repair protein REV1 99.4 2.1E-13 7.3E-18 116.1 7.8 85 196-282 9-94 (97)
31 3pc6_A DNA repair protein XRCC 99.3 2.5E-12 8.5E-17 112.0 9.5 84 197-282 5-93 (104)
32 3l3e_A DNA topoisomerase 2-bin 99.3 1.7E-12 5.9E-17 112.8 8.2 84 197-283 13-102 (107)
33 2d8m_A DNA-repair protein XRCC 99.3 7.8E-12 2.7E-16 112.5 7.6 85 197-284 20-107 (129)
34 1l7b_A DNA ligase; BRCT, autos 99.2 1.5E-11 5E-16 104.8 7.1 77 54-134 4-80 (92)
35 2ep8_A Pescadillo homolog 1; A 99.2 2.6E-11 8.8E-16 104.8 7.1 82 196-281 9-99 (100)
36 3pa6_A Microcephalin; BRCT dom 99.2 3.5E-11 1.2E-15 105.2 7.0 86 197-284 5-96 (107)
37 2ep8_A Pescadillo homolog 1; A 99.2 6.3E-11 2.2E-15 102.4 8.1 82 53-144 8-100 (100)
38 2k6g_A Replication factor C su 99.1 1.5E-10 5E-15 101.6 9.6 79 53-135 28-108 (109)
39 3pc7_A DNA ligase 3; DNA repai 99.1 5.9E-11 2E-15 100.1 6.8 74 197-278 14-87 (88)
40 2coe_A Deoxynucleotidyltransfe 99.1 2.2E-10 7.6E-15 102.0 10.2 85 195-281 16-111 (120)
41 2ebu_A Replication factor C su 99.1 6.5E-10 2.2E-14 97.9 10.3 78 53-134 18-97 (112)
42 3ii6_X DNA ligase 4; XRCC4, NH 99.0 7.9E-10 2.7E-14 110.9 10.5 92 54-145 161-263 (263)
43 2jw5_A DNA polymerase lambda; 99.0 1.1E-10 3.6E-15 101.9 2.7 85 196-282 8-102 (106)
44 2jw5_A DNA polymerase lambda; 99.0 3.9E-10 1.3E-14 98.3 5.4 92 53-146 7-104 (106)
45 2cok_A Poly [ADP-ribose] polym 98.9 1.8E-09 6.2E-14 95.2 8.4 75 55-133 8-85 (113)
46 1z56_C DNA ligase IV; DNA repa 98.9 7.2E-10 2.5E-14 110.5 5.4 95 53-147 156-263 (264)
47 3pc7_A DNA ligase 3; DNA repai 98.9 3E-09 1E-13 89.7 6.9 75 53-140 12-87 (88)
48 2nte_A BARD-1, BRCA1-associate 98.9 5.1E-09 1.8E-13 100.8 9.4 80 202-284 2-87 (210)
49 3u3z_A Microcephalin; DNA repa 98.9 1.7E-09 5.7E-14 104.2 5.9 82 54-146 116-198 (199)
50 1l0b_A BRCA1; TANDEM-BRCT, thr 98.8 5.4E-09 1.8E-13 101.6 8.8 83 198-283 3-94 (229)
51 1t15_A Breast cancer type 1 su 98.8 6.1E-09 2.1E-13 99.8 7.8 80 201-283 3-91 (214)
52 2coe_A Deoxynucleotidyltransfe 98.8 4.5E-08 1.5E-12 87.1 11.8 93 53-145 16-113 (120)
53 3sqd_A PAX-interacting protein 98.8 9.9E-09 3.4E-13 100.3 7.9 83 198-284 12-98 (219)
54 3al2_A DNA topoisomerase 2-bin 98.7 2.2E-08 7.4E-13 98.9 9.3 84 199-283 6-93 (235)
55 3ef0_A RNA polymerase II subun 98.7 1.1E-08 3.8E-13 107.4 7.0 83 197-282 280-370 (372)
56 2vxb_A DNA repair protein RHP9 98.7 2.4E-08 8.3E-13 98.8 6.9 86 198-283 1-116 (241)
57 1kzy_C Tumor suppressor P53-bi 98.7 3.5E-08 1.2E-12 98.7 8.0 86 197-284 13-136 (259)
58 2dun_A POL MU, DNA polymerase 98.6 3.8E-08 1.3E-12 88.5 6.4 82 197-281 8-104 (133)
59 3ef1_A RNA polymerase II subun 98.6 3.1E-08 1E-12 105.9 6.2 83 197-282 350-440 (442)
60 2etx_A Mediator of DNA damage 98.5 1.9E-07 6.4E-12 90.2 8.8 89 55-148 113-204 (209)
61 2dun_A POL MU, DNA polymerase 98.5 2.7E-07 9.1E-12 83.1 7.1 90 53-145 6-106 (133)
62 3l41_A BRCT-containing protein 98.3 2.5E-07 8.7E-12 90.4 2.7 76 201-283 7-86 (220)
63 3t7k_A RTT107, regulator of TY 98.1 2.1E-05 7.2E-10 77.7 12.3 176 59-274 21-240 (256)
64 1l7b_A DNA ligase; BRCT, autos 98.0 9.9E-06 3.4E-10 68.7 7.3 72 197-272 5-80 (92)
65 1dgs_A DNA ligase; AMP complex 97.9 1.5E-06 5.2E-11 97.2 0.0 77 55-135 585-661 (667)
66 2cok_A Poly [ADP-ribose] polym 97.8 4.7E-05 1.6E-09 66.9 8.4 81 197-280 8-104 (113)
67 2k6g_A Replication factor C su 97.8 5.1E-05 1.7E-09 66.3 8.0 75 197-273 30-108 (109)
68 2owo_A DNA ligase; protein-DNA 97.8 2.9E-06 1E-10 95.0 0.0 75 55-133 595-670 (671)
69 2ebu_A Replication factor C su 97.7 9.5E-05 3.3E-09 64.9 7.4 74 197-273 20-98 (112)
70 2l42_A DNA-binding protein RAP 97.3 0.00014 4.8E-09 61.9 3.4 82 54-147 8-96 (106)
71 2l42_A DNA-binding protein RAP 97.3 0.00013 4.6E-09 62.0 3.0 81 197-284 9-95 (106)
72 3huf_A DNA repair and telomere 97.2 0.0021 7.3E-08 65.6 11.9 177 58-273 113-304 (325)
73 4gns_A Chitin biosynthesis pro 96.0 0.024 8.4E-07 53.0 9.1 89 54-146 158-254 (290)
74 1dgs_A DNA ligase; AMP complex 93.2 0.016 5.4E-07 65.0 0.0 74 197-273 585-661 (667)
75 2owo_A DNA ligase; protein-DNA 91.4 0.037 1.3E-06 62.1 0.0 72 197-271 595-670 (671)
76 3huf_A DNA repair and telomere 90.6 0.62 2.1E-05 47.6 8.1 85 201-291 114-207 (325)
77 3t7k_A RTT107, regulator of TY 90.1 0.3 1E-05 48.2 5.3 80 202-282 22-117 (256)
78 4gns_A Chitin biosynthesis pro 89.7 0.63 2.2E-05 43.5 6.7 87 197-287 159-257 (290)
79 3qbz_A DDK kinase regulatory s 87.3 1.1 3.9E-05 41.2 6.6 74 56-133 57-151 (160)
80 3oq0_A DBF4, protein DNA52; DD 87.2 1.9 6.6E-05 39.3 8.0 76 55-134 18-114 (151)
81 3oq4_A DBF4, protein DNA52; DD 85.1 1.7 5.9E-05 38.9 6.5 59 72-134 31-97 (134)
82 3oq0_A DBF4, protein DNA52; DD 75.4 11 0.00037 34.4 8.4 49 198-248 19-79 (151)
83 3qbz_A DDK kinase regulatory s 75.1 2.5 8.7E-05 38.8 4.2 50 197-248 56-117 (160)
84 3oq4_A DBF4, protein DNA52; DD 74.1 4.3 0.00015 36.3 5.3 44 203-248 8-62 (134)
85 2aq4_A DNA repair protein REV1 69.5 2.3 7.9E-05 45.0 2.9 30 320-349 14-43 (434)
86 2k2w_A Recombination and DNA r 65.3 4.5 0.00015 35.4 3.4 34 197-233 11-44 (118)
87 3mn2_A Probable ARAC family tr 42.0 18 0.00063 29.7 3.4 35 458-492 4-38 (108)
88 3oou_A LIN2118 protein; protei 39.2 22 0.00074 29.3 3.4 35 458-492 7-41 (108)
89 2k9s_A Arabinose operon regula 37.8 18 0.00061 29.8 2.6 35 458-492 5-40 (107)
90 3lsg_A Two-component response 36.3 25 0.00086 28.5 3.3 35 458-492 4-39 (103)
91 3mkl_A HTH-type transcriptiona 33.2 19 0.00065 30.3 2.1 35 458-492 9-43 (120)
92 3oio_A Transcriptional regulat 32.1 19 0.00064 29.9 1.9 35 458-492 9-43 (113)
93 3k2z_A LEXA repressor; winged 28.3 50 0.0017 30.4 4.2 29 459-487 8-39 (196)
94 1bl0_A Protein (multiple antib 25.2 27 0.00094 29.8 1.7 35 458-492 13-47 (129)
95 2lnh_A N-WAsp, neural wiskott- 22.9 17 0.00059 28.4 -0.1 31 443-473 23-58 (65)
96 2rr3_B OSBP, oxysterol-binding 22.1 49 0.0017 23.8 2.2 12 389-400 15-26 (47)
97 2lkp_A Transcriptional regulat 21.5 1.1E+02 0.0036 25.3 4.7 46 454-511 30-79 (119)
No 1
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.96 E-value=5.5e-28 Score=247.36 Aligned_cols=180 Identities=21% Similarity=0.302 Sum_probs=156.5
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
.+.+|+|++||+||+.+++|..|.++|+.+||+++.++++++||||+....+.||..|.+. ||+||+++||.+|++
T Consensus 102 y~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~----gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 102 YNMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANL----KKPILLPSWIKTLWE 177 (298)
T ss_dssp CCCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHT----TCCEECHHHHHHHHH
T ss_pred cccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHC----CCeEeeHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999995 899999999999999
Q ss_pred cccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCCH
Q 009146 134 RNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSE 213 (542)
Q Consensus 134 ~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs~ 213 (542)
.++.++...|.-. +. ......+|.|++|++ +|+.+
T Consensus 178 ~~~~~~~~~~~~~-------~~-------------------------------------~~~~~~~f~g~~i~~-tG~~~ 212 (298)
T 3olc_X 178 KSQEKKITRYTDI-------NM-------------------------------------EDFKCPIFLGCIICV-TGLCG 212 (298)
T ss_dssp HHHTTCCSSGGGS-------CG-------------------------------------GGGBCCTTTTCEEEE-CSCCH
T ss_pred cCCcCCccccccc-------cc-------------------------------------ccccccccCCeEEEE-eCCCC
Confidence 9987765443100 00 001246899999999 99999
Q ss_pred HHHHHHHHHHHhCCCEEEccccCC-CCceEEEecCchHhHH---hcCCCceecHHHHHHHHHhcCcCccCCcChH
Q 009146 214 ELRNKVFEAATNEGATLVNQWFVG-CGASYVVCEEDSVQKY---MGHSNNLVTPVWVLKTAKEKHVQRLVHISAD 284 (542)
Q Consensus 214 ~~r~~L~~lI~~~GG~vvds~~l~-~~vTHVVv~~~s~kk~---l~~~~~IVs~~WLlDcik~g~llp~~~ys~d 284 (542)
..++.+.++|+.+||++.++ ++ .++||||+......|+ ..++++||+++||+||+++|+++++.+|...
T Consensus 213 ~~r~~l~~li~~~GG~~~~~--ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~~g~~lde~~Y~l~ 285 (298)
T 3olc_X 213 LDRKEVQQLTVKHGGQYMGQ--LKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIEKGFCQDESIYKTE 285 (298)
T ss_dssp HHHHHHHHHHHHTTCEECSS--CCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHHHTSCCCGGGSBSC
T ss_pred ccHHHHHHHHHHcCCEEece--ecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHHCCCCCCchhcCCC
Confidence 99999999999999999998 46 7899999988654444 3578999999999999999999999999754
No 2
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.94 E-value=1.3e-26 Score=233.12 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=152.0
Q ss_pred CCCCCCCCcEEEE-eCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICV-TGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcv-tG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
..+.+|+|++||| +|.....|+.|+++|.+|||++..++++.+||+|+... +.|++.+++++ +++||+|+||.||
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~-~~k~~~~~~~g---~~~IV~p~Wv~Dc 81 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSE-NIRVKNIILSN---KHDVVKPAWLLEC 81 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSC-CHHHHHHHHSC---SCCEECHHHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCC-CHHHHHHHhcC---CCCEeehHHHHHH
Confidence 4678999999999 58888899999999999999999999988888888654 59999999972 5999999999999
Q ss_pred HHcccCCCCCccccccccccC-----Cchh-------------hhhcccCCCCCCCCCCCccchhhhccccccccccccc
Q 009146 132 VRRNVRLSESLYTVKSIDEHG-----MHLD-------------KLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSN 193 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~e~~-----~p~d-------------~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~ 193 (542)
++++++||+.+|.+-...+.. ...| +++.|++--.......|... ...-..+|+ +....
T Consensus 82 i~~~~llp~~p~~~~~~~~~~~~~~~~~~D~~GDsy~~~~~~~~l~~ll~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~ 158 (263)
T 3ii6_X 82 FKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEM--ASLIADLEY-RYSWD 158 (263)
T ss_dssp HHHTSCCCCCGGGEEECCHHHHHHTTTTBCTTSCBSSSCCCHHHHHHHHHSCCCCCSCCHHHH--HHHHHHHHH-HHTCT
T ss_pred HhcCCcCCCCHHHHhhCCHHHHHHHHHhccccCCccCCcCCHHHHHHHHHhCcccccCCchhh--HHHHHHHHH-hhccc
Confidence 999999999988764322211 0111 11111110000000000000 000000110 00112
Q ss_pred cCCCCCCCCcEEEEeC---------CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCch-----HhHH---hcC
Q 009146 194 RSMNSTLSGCSMYVDS---------DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS-----VQKY---MGH 256 (542)
Q Consensus 194 ~~~~~lF~G~~Iyld~---------gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s-----~kk~---l~~ 256 (542)
..+..+|+||+|||+. .+.....+.++.+|+.+||++++. ++..+||||+.++. ++++ +..
T Consensus 159 ~~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~--l~~~vTHVVv~~~~~r~~~~~~~~~~~~~ 236 (263)
T 3ii6_X 159 CSPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSC--LAEGVSHVIIGEDHSRVADFKAFRRTFKR 236 (263)
T ss_dssp TCGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESS--CCTTCCEEEECSCCTTHHHHHHHHHTCSS
T ss_pred CCcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecC--CCCCceEEEECCCCccHHHHHHHHhhcCC
Confidence 2457899999999942 123334567789999999999999 58899999998631 2222 246
Q ss_pred CCceecHHHHHHHHHhcCcCccCCcC
Q 009146 257 SNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 257 ~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
+++||++.||.+|+++|+++|+.+|.
T Consensus 237 ~~~iV~~~Wv~dci~~~~~l~E~~Y~ 262 (263)
T 3ii6_X 237 KFKILKESWVTDSIDKCELQEENQYL 262 (263)
T ss_dssp CCEEEETHHHHHHHHTTSCCCGGGTB
T ss_pred CCEEeChHHHHHHHHcCCcCCHhhCC
Confidence 78999999999999999999999885
No 3
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.93 E-value=2.9e-25 Score=217.08 Aligned_cols=193 Identities=18% Similarity=0.234 Sum_probs=144.0
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~------~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
..+++++||+||+.+.++..|.+++..+||.+..+++..|||||+... .+.||..|+.+ |++||+++||.
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~----g~~IV~~~Wl~ 78 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAG----GKWIVSYSWVI 78 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHT----TCEEEETHHHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHC----CCcEecHHHHH
Confidence 568899999999999999999999999999999999999999999985 58999999995 89999999999
Q ss_pred HHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeC
Q 009146 130 DSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDS 209 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~ 209 (542)
||+++|+++||.+|.+........ ....|.. .......+|.|+.||+..
T Consensus 79 ~~~~~~~~~~e~~y~~~~~~~~~~---------------~~~~~~~----------------~r~~~~~lF~g~~~~~~~ 127 (229)
T 1l0b_A 79 KSIQERKLLSVHEFEVKGDVVTGS---------------NHQGPRR----------------SRESQEKLFEGLQIYCCE 127 (229)
T ss_dssp HHHTTTSCCCSGGGBCCEETTTCS---------------SSCHHHH----------------HHHHC--CCTTCEEEECS
T ss_pred HHHHCCCcCChHHeEecccccccc---------------ccccchh----------------hhhhhhhhhcCceEEEEe
Confidence 999999999999999864221100 0000000 000124799999999954
Q ss_pred CCCHHHHHHHHHHHHhCCCEEEccccC---CCCceEE-EecCch------HhHH-hcCCCceecHHHHHHHHHhcCcCcc
Q 009146 210 DVSEELRNKVFEAATNEGATLVNQWFV---GCGASYV-VCEEDS------VQKY-MGHSNNLVTPVWVLKTAKEKHVQRL 278 (542)
Q Consensus 210 gfs~~~r~~L~~lI~~~GG~vvds~~l---~~~vTHV-Vv~~~s------~kk~-l~~~~~IVs~~WLlDcik~g~llp~ 278 (542)
.+....++.|.++|+.+||++++.+.. ..+.+|+ |+.... ++.+ ...+++||+++||+||+.+++++++
T Consensus 128 ~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs~~WlldsI~~~~~~~~ 207 (229)
T 1l0b_A 128 PFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDWVLDSISVYRCRDL 207 (229)
T ss_dssp CCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHHHHHHHHTTSCCCG
T ss_pred cCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEeehhHHHHHHhcCCcCCc
Confidence 576667889999999999999998411 1135774 444321 1212 1467999999999999999999999
Q ss_pred CCcCh
Q 009146 279 VHISA 283 (542)
Q Consensus 279 ~~ys~ 283 (542)
.+|..
T Consensus 208 ~~Y~l 212 (229)
T 1l0b_A 208 DAYLV 212 (229)
T ss_dssp GGGBC
T ss_pred cceEc
Confidence 88843
No 4
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.93 E-value=3.1e-25 Score=214.86 Aligned_cols=181 Identities=19% Similarity=0.270 Sum_probs=144.1
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEec---CCCHHHHHHHhcCCCCCcEEEechHHHHHHHcc
Q 009146 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQS---FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRN 135 (542)
Q Consensus 59 ~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~---~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g 135 (542)
.|++||+||+.+.++..|.+++..+||.+..+++..|||||+.. ..+.||..|+.. |++||+++||.||+++|
T Consensus 1 ~~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~----g~~IV~~~Wl~~c~~~~ 76 (210)
T 2nte_A 1 GPLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILN----GCWILKFEWVKACLRRK 76 (210)
T ss_dssp CCCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHT----TCEEEETHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhc----CCEEecHHHHHHHHHcC
Confidence 37899999999999999999999999999999999999999987 568999999995 89999999999999999
Q ss_pred cCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCCHHH
Q 009146 136 VRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEEL 215 (542)
Q Consensus 136 ~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs~~~ 215 (542)
+++||.+|.+...... ...++ .+....+|+|+.||+...+....
T Consensus 77 ~~~~e~~y~~~~~~~~----~r~~~--------------------------------~~~~~~lF~g~~~~l~~~~~~~~ 120 (210)
T 2nte_A 77 VCEQEEKYEIPEGPRR----SRLNR--------------------------------EQLLPKLFDGCYFYLWGTFKHHP 120 (210)
T ss_dssp SCCCGGGTBCTTHHHH----HHHHH--------------------------------HTTCCCTTTTCEEEECSCCSSSC
T ss_pred CcCChhhccCCCCChh----hhhcc--------------------------------ccccccccCceEEEEeccCCCCC
Confidence 9999999998631100 00000 00125799999999944576677
Q ss_pred HHHHHHHHHhCCCEEEcccc---------------------CCCCceEEEecCchHh----HHhcCCCceecHHHHHHHH
Q 009146 216 RNKVFEAATNEGATLVNQWF---------------------VGCGASYVVCEEDSVQ----KYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 216 r~~L~~lI~~~GG~vvds~~---------------------l~~~vTHVVv~~~s~k----k~l~~~~~IVs~~WLlDci 270 (542)
++.|.++|+.+||++++..- ....+||.|+..+..+ .+...++.+|+++||+|||
T Consensus 121 ~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~~~~~~~~~~v~~V~~~Wl~dcI 200 (210)
T 2nte_A 121 KDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNYHPERVRQGKVWKAPSSWFIDCV 200 (210)
T ss_dssp HHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSCCCSCSEETTEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEeccccccCHHHHhccCcccccHHHHHHHH
Confidence 89999999999999996310 0134688888664321 1223567899999999999
Q ss_pred HhcCcCccC
Q 009146 271 KEKHVQRLV 279 (542)
Q Consensus 271 k~g~llp~~ 279 (542)
.++.+||+.
T Consensus 201 ~~~~llp~~ 209 (210)
T 2nte_A 201 MSFELLPLD 209 (210)
T ss_dssp HHTSCCCSC
T ss_pred HhCeeccCC
Confidence 999999975
No 5
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.92 E-value=8.4e-25 Score=211.02 Aligned_cols=191 Identities=17% Similarity=0.192 Sum_probs=145.3
Q ss_pred CCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC------CCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 59 SGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF------GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 59 ~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~------~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
+|++||+||+.+.++..|.+++..+||.+..+++..|||||+... .+.||..|+.. |++||+++||.||+
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~----g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAG----GKWVVSYFWVTQSI 78 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHT----TCEEEETHHHHHHH
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhc----CCEEeCHHHHHHHH
Confidence 589999999999999999999999999999999999999999985 48999999985 89999999999999
Q ss_pred HcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 009146 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs 212 (542)
++|+++||.+|.+......... ..-|. .. .+ .....+|.|+.||+...+.
T Consensus 79 ~~~~~~~e~~y~~~~~~~~~~~---------------~~~~~---~~-----r~-------~~~~~lF~g~~~~~~~~~~ 128 (214)
T 1t15_A 79 KERKMLNEHDFEVRGDVVNGRN---------------HQGPK---RA-----RE-------SQDRKIFRGLEICCYGPFT 128 (214)
T ss_dssp HTTSCCCGGGGBCCEETTTBTT---------------CCHHH---HH-----HT-------CTTSCTTTTCEEEECSCCS
T ss_pred HCCCcCChHHeEeecccccccc---------------ccchh---hH-----hh-------cCCCcccCCCEEEEEecCC
Confidence 9999999999998642211000 00000 00 00 0125799999999955576
Q ss_pred HHHHHHHHHHHHhCCCEEEccccCCC---CceEEEecCchH----hHH----hcCCCceecHHHHHHHHHhcCcCccCCc
Q 009146 213 EELRNKVFEAATNEGATLVNQWFVGC---GASYVVCEEDSV----QKY----MGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 213 ~~~r~~L~~lI~~~GG~vvds~~l~~---~vTHVVv~~~s~----kk~----l~~~~~IVs~~WLlDcik~g~llp~~~y 281 (542)
...++.|..+|+.+||++++...... ...+||+.+++. .++ ...++++|+++||+||+.+++++|+..|
T Consensus 129 ~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y 208 (214)
T 1t15_A 129 NMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREWVLDSVALYQCQELDTY 208 (214)
T ss_dssp SSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHHHHHHHHHTSCCCSGGG
T ss_pred CCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEeccHHHHhHhhcCcCCCcce
Confidence 66688999999999999998742111 123454433211 122 2467899999999999999999999998
Q ss_pred Ch
Q 009146 282 SA 283 (542)
Q Consensus 282 s~ 283 (542)
..
T Consensus 209 ~l 210 (214)
T 1t15_A 209 LI 210 (214)
T ss_dssp BC
T ss_pred ee
Confidence 43
No 6
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.92 E-value=1.2e-24 Score=210.28 Aligned_cols=183 Identities=16% Similarity=0.209 Sum_probs=143.3
Q ss_pred CcEEEEeCCChhhHHHHHHHHHhcCC-EEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHHHHcccC
Q 009146 60 GLVICVTGLSKEARKQVMEATERLGG-QYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVR 137 (542)
Q Consensus 60 GlvIcvtG~~~~er~~L~~lI~~~GG-~~s~~Ls~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g~~ 137 (542)
..+|++||+++++++.|.++|..+|| .+..+++..|||||+... .+.||..|+.. |++||+++||.+|++.|++
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~----g~~Iv~~~Wv~~~~~~g~~ 86 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIAR----GCWVLSYDWVLWSLELGHW 86 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHT----TCEEEETHHHHHHHHHTSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHC----CCcEEeHHHHHHHhhCCCC
Confidence 46899999999999999999999988 677999999999999885 68999999995 8999999999999999999
Q ss_pred CCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcE-EEEeCCCCHHHH
Q 009146 138 LSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCS-MYVDSDVSEELR 216 (542)
Q Consensus 138 Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~-Iyld~gfs~~~r 216 (542)
+||.+|.+....... + ..++.... ........+|+|+. ||+ .++....+
T Consensus 87 l~e~~y~~~~~~~~~-~---~~rl~r~~-------------------------~~~~~~~~LF~g~~~~~v-~~~~~~~~ 136 (199)
T 3u3z_A 87 ISEEPFELSHHFPAA-P---LCRSECHL-------------------------SAGPYRGTLFADQPVMFV-SPASSPPV 136 (199)
T ss_dssp CCSGGGBCTTTCTHH-H---HHHHHHHH-------------------------CSSSCCCCTTTTSCCEEE-CTTCSSCH
T ss_pred CChhhccccCCcccc-c---cchhhhhh-------------------------hcccccchhhCCCeEEEE-CCCCCCCH
Confidence 999999997542110 0 00000000 00011257999995 666 77776677
Q ss_pred HHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHhcCCCceecHHHHHHHHHhcCcCccCCcC
Q 009146 217 NKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 217 ~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WLlDcik~g~llp~~~ys 282 (542)
+.|..+|+.+||+++... ..++++|+.... + ...++++|+++||+|||.++.+||+.+|-
T Consensus 137 ~~L~~lI~~~GG~v~~~~---~~~~iiI~~~~~-~--~~~~~~~V~p~Wi~DsI~~~~llp~~~Y~ 196 (199)
T 3u3z_A 137 AKLCELVHLCGGRVSQVP---RQASIVIGPYSG-K--KKATVKYLSEKWVLDSITQHKVCAPENYL 196 (199)
T ss_dssp HHHHHHHHHTTCCBCSSG---GGCSEEESCCCS-C--CCTTCEEECHHHHHHHHHHTSCCCGGGGB
T ss_pred HHHHHHHHHcCCEEeccC---CCCEEEEeCCch-h--ccCCCcEEChhHHHHHHHcCCcCChHhcc
Confidence 999999999999999983 345555544322 1 13678999999999999999999999883
No 7
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.89 E-value=1.6e-22 Score=203.06 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=144.2
Q ss_pred CCCCCCCCCcEEEEeCCChh-----------------------------hHHHHHHHHHhcCCEEcccCCCC------ce
Q 009146 52 LPANAPFSGLVICVTGLSKE-----------------------------ARKQVMEATERLGGQYSPDLHPQ------CT 96 (542)
Q Consensus 52 ~~~~~iF~GlvIcvtG~~~~-----------------------------er~~L~~lI~~~GG~~s~~Ls~~------~T 96 (542)
+....+|.|+.|++|+.... .|.+|+++|+.+||.+..+++.. +|
T Consensus 10 p~~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t 89 (259)
T 1kzy_C 10 PLNKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQC 89 (259)
T ss_dssp CSSTTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEE
T ss_pred CCCCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCe
Confidence 35678999999999998653 66899999999999999999854 79
Q ss_pred EEEEec-CCCHHHHHHHhcCCCCCcEEEechHHHHHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCcc
Q 009146 97 HLVVQS-FGGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAG 175 (542)
Q Consensus 97 HLVa~~-~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~ 175 (542)
|||+.. ..+.||..|+.. |++||+++||.||++.++.+|+.+|.+........ .++..
T Consensus 90 ~LIa~~~~rt~K~l~ala~----g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g~s~~~-----~~~~~------------ 148 (259)
T 1kzy_C 90 LLIADQHCRTRKYFLCLAS----GIPCVSHVWVHDSCHANQLQNYRNYLLPAGYSLEE-----QRILD------------ 148 (259)
T ss_dssp EEEESSCCCSHHHHHHHHH----TCCEEETHHHHHHHHHTSCCCGGGSBCCCEEETTT-----TEEEC------------
T ss_pred EEEcCCCCCcHHHHHHHhc----CCCCccHHHHHHHHHcCCcCCHHHccCCCCccccc-----chhhh------------
Confidence 999987 468899999986 89999999999999999999999999863211000 00000
Q ss_pred chhhhccccccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccC-------CCCceEEEecCc
Q 009146 176 IYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFV-------GCGASYVVCEED 248 (542)
Q Consensus 176 I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l-------~~~vTHVVv~~~ 248 (542)
......+|+|++|||.....+...+.+..+++.+||+++..+.. ....+|||+.+.
T Consensus 149 -----------------~~~~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~ 211 (259)
T 1kzy_C 149 -----------------WQPRENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDP 211 (259)
T ss_dssp -----------------CCCCCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECT
T ss_pred -----------------ccccCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECC
Confidence 00125799999999965554445577889999999998876310 123455555442
Q ss_pred ---h-H-hHHhcCCCceecHHHHHHHHHhcCcCccCCc
Q 009146 249 ---S-V-QKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 249 ---s-~-kk~l~~~~~IVs~~WLlDcik~g~llp~~~y 281 (542)
+ . +....++++||+.+||++|+..|++++....
T Consensus 212 ~~~~~~~~~a~~~~i~iVs~EWv~~sI~~~~ll~~~~h 249 (259)
T 1kzy_C 212 SCPASVLKCAEALQLPVVSQEWVIQCLIVGERIGFKQH 249 (259)
T ss_dssp TCCHHHHHHHHHHTCCEECHHHHHHHHHHTSCCCTTSS
T ss_pred CChHHHHHHHHhcCCCEecHHHHHHHHHhCCcCCCCcC
Confidence 2 1 1223578999999999999999999998654
No 8
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.1e-24 Score=213.26 Aligned_cols=219 Identities=12% Similarity=0.093 Sum_probs=125.8
Q ss_pred CCCCCCCcEEEE-eCCCh------hhHHHHHHHHHhcCCEEcccCCCC-----ceEEEEecCCCHHHHHHHhcCCCCCcE
Q 009146 54 ANAPFSGLVICV-TGLSK------EARKQVMEATERLGGQYSPDLHPQ-----CTHLVVQSFGGRKFEHALKHGSRNGLY 121 (542)
Q Consensus 54 ~~~iF~GlvIcv-tG~~~------~er~~L~~lI~~~GG~~s~~Ls~~-----~THLVa~~~~g~Ky~~A~k~g~~~gI~ 121 (542)
..++|+|++||| +|+.. ..|..|+.+|.+|||++..+.... +||+|+.. .+.|++.+.++ +++
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~~~~----~~~ 76 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKALIDR----GYD 76 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGGTTT----TCC
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHHHhC----CCC
Confidence 457999999998 56432 478999999999999988766543 36777764 57788877765 699
Q ss_pred EEechHHHHHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhh-------hc--ccccccccccc
Q 009146 122 IVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEA-------KQ--FNATGKHERDS 192 (542)
Q Consensus 122 IV~p~WI~Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~es-------k~--s~s~E~ld~~~ 192 (542)
||+|+||.||++++++++..+|.+-...+...+ .+..-++.. .++...+....+. .. +...++.+...
T Consensus 77 vV~p~Wv~dci~~~~llp~~~y~~~~~~~~~~~--~~~~~~d~~-gdsy~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 153 (264)
T 1z56_C 77 ILHPNWVLDCIAYKRLILIEPNYCFNVSQKMRA--VAEKRVDCL-GDSFENDISETKLSSLYKSQLSLPPMGELEIDSEV 153 (264)
T ss_dssp CBCSSTTHHHHSSCSCCCCCSCBSCCCGGGTHH--HHGGGBCSS-SCBSSSCCCHHHHHHTTSCCSCCCCCCCCSSCCSC
T ss_pred EEechHHHHHhhcCCCCCCChHHhhcCCHHHHH--HHHHhcccc-CCccccCCCHHHHHHHHHhcccccchhhhhhhccc
Confidence 999999999999999999999866432221100 000000000 0000000000000 00 00011112222
Q ss_pred ccCCCCCCCCcEEEEeCCC-CHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---------hHhHHhcC------
Q 009146 193 NRSMNSTLSGCSMYVDSDV-SEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---------SVQKYMGH------ 256 (542)
Q Consensus 193 ~~~~~~lF~G~~Iyld~gf-s~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---------s~kk~l~~------ 256 (542)
...+..+|+||+||| .++ ....++.+..+|+.+||++++. ++..+||||+..+ .+++.+..
T Consensus 154 ~~~~~~lF~g~~~yl-~~~~~~~~~~~l~~~i~~~GG~v~~~--l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (264)
T 1z56_C 154 RRFPLFLFSNRIAYV-PRRKISTEDDIIEMKIKLFGGKITDQ--QSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASD 230 (264)
T ss_dssp CCCCCC---------------------CHHHHHHHTTSCCCC--SSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSS
T ss_pred ccCchhhhCCeEEEE-ecCCCchhHHHHHHHHHHcCCEEecc--cCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccc
Confidence 234578999999999 654 3456677899999999999998 4655566665432 12332322
Q ss_pred ---C-CceecHHHHHHHHHhcCcCccCCcCh
Q 009146 257 ---S-NNLVTPVWVLKTAKEKHVQRLVHISA 283 (542)
Q Consensus 257 ---~-~~IVs~~WLlDcik~g~llp~~~ys~ 283 (542)
+ ++||++.||.+|+++|+++++..|.+
T Consensus 231 ~~~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~ 261 (264)
T 1z56_C 231 TIPKIARVVAPEWVDHSINENCQVPEEDFPV 261 (264)
T ss_dssp SCCCCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred ccCCCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence 2 59999999999999999999999954
No 9
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.88 E-value=1.2e-22 Score=197.25 Aligned_cols=188 Identities=20% Similarity=0.249 Sum_probs=135.0
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
.+.+...+++||+||+.+++ ++++|..+||.+..+++. |||||+... .+.||..|+.+ |++||+++||.+|
T Consensus 5 ~~~~~~~~~~v~~sG~~~~~---~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~----g~~IV~~~Wl~~~ 76 (209)
T 2etx_A 5 KLNQESTAPKVLFTGVVDAR---GERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGR----GIPILSLDWLHQS 76 (209)
T ss_dssp -------CCEEEECSSCCHH---HHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHH----TCCEECTHHHHHH
T ss_pred cccccCCCcEEEEeCCCcHH---HHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhc----CCccccHHHHHHH
Confidence 35677889999999999754 489999999999999985 999999876 58999999997 8999999999999
Q ss_pred HHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCC
Q 009146 132 VRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV 211 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gf 211 (542)
+++++++||.+|.+.+..... ..++. +...+... ....+|.|++||+ .+.
T Consensus 77 ~~~~~~l~e~~y~~~~~~~~~--------~~~~~------l~~~~~~a---------------~~~~lF~g~~~~~-~~~ 126 (209)
T 2etx_A 77 RKAGFFLPPDEYVVTDPEQEK--------NFGFS------LQDALSRA---------------RERRLLEGYEIYV-TPG 126 (209)
T ss_dssp HHHTSCCCSGGGBCCCHHHHH--------HTTCC------HHHHHHHH---------------HHSCTTTTCEEEE-CTT
T ss_pred HHcCCCCChhhccccChhhhh--------hcCCC------HHHHHhhh---------------hhCCCcCCcEEEE-eCC
Confidence 999999999999986431100 00000 00000000 0137999999999 444
Q ss_pred CHHHHHHHHHHHHhCCCEEEccccCCCC--ceEEEecCc-h---HhHHhcCCCceecHHHHHHHHHhcCcCccCCc
Q 009146 212 SEELRNKVFEAATNEGATLVNQWFVGCG--ASYVVCEED-S---VQKYMGHSNNLVTPVWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 212 s~~~r~~L~~lI~~~GG~vvds~~l~~~--vTHVVv~~~-s---~kk~l~~~~~IVs~~WLlDcik~g~llp~~~y 281 (542)
....++.|.++|+.+||+++... ... -+|||+... + .+.+...++++|+++||++||..+++ ++..|
T Consensus 127 ~~~~~~~l~~li~~~GG~v~~~~--~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~~sI~~q~l-d~e~y 199 (209)
T 2etx_A 127 VQPPPPQMGEIISCCGGTYLPSM--PRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLLTGVLKQEA-KPEAF 199 (209)
T ss_dssp CSSCHHHHHHHHHHTTCEECSSC--CCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHHHHHHHTCC-CGGGG
T ss_pred CCCCHHHHHHHHHHCCCEEECCC--CCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHHHHHHhccc-ChHHh
Confidence 33456889999999999999873 332 267777542 2 23334678999999999999998775 66555
No 10
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=192.28 Aligned_cols=192 Identities=16% Similarity=0.254 Sum_probs=143.7
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCC-CHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFG-GRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~-g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
....++.|++||+||+.+.++..+.++|..+||.+..+. .+|||||+.... +.||..|+.+ |++||+++||.+|
T Consensus 9 ~~~~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~----g~~IVs~~Wl~~c 83 (219)
T 3sqd_A 9 MKLTPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISV----VKHIVTPEWLEEC 83 (219)
T ss_dssp CCCCGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTT----CSEEECHHHHHHH
T ss_pred cccCCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHc----CCCEecHHHHHHH
Confidence 356789999999999999999999999999999999886 899999998764 5799999986 7999999999999
Q ss_pred HHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCC
Q 009146 132 VRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDV 211 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gf 211 (542)
+++|+++||.+|.+.+..... ..++. +...+... ....+|.|+.|||...+
T Consensus 84 ~~~~~~l~e~~y~l~d~~~e~--------~~~~~------l~~~l~ra---------------~~~~LF~G~~f~it~~~ 134 (219)
T 3sqd_A 84 FRCQKFIDEQNYILRDAEAEV--------LFSFS------LEESLKRA---------------HVSPLFKAKYFYITPGI 134 (219)
T ss_dssp HHHTSCCCSGGGBCCCHHHHH--------HTTCC------HHHHHHHH---------------HHSCTTTTEEEEECTTC
T ss_pred HHcCCCCChHhccCCCchhhh--------hcCCC------hHHHhhhh---------------ccccccCCcEEEEeCCC
Confidence 999999999999987532110 00000 00000000 01479999999995556
Q ss_pred CHHHHHHHHHHHHhCCCEEEccccCC----------CC-ceEEEecCc----hHhHHhcCCCceecHHHHHHHHHhcCcC
Q 009146 212 SEELRNKVFEAATNEGATLVNQWFVG----------CG-ASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAKEKHVQ 276 (542)
Q Consensus 212 s~~~r~~L~~lI~~~GG~vvds~~l~----------~~-vTHVVv~~~----s~kk~l~~~~~IVs~~WLlDcik~g~ll 276 (542)
.+. ++.|..+|+.+||+++... .. .. -..||+..+ ..+.+...++.|++.+||++||-++++
T Consensus 135 ~~~-~~~l~~lI~~~GG~v~~~~-p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~l- 211 (219)
T 3sqd_A 135 CPS-LSTMKAIVECAGGKVLSKQ-PSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTL- 211 (219)
T ss_dssp SSC-HHHHHHHHHHTTCEEESSC-CCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCC-
T ss_pred CCC-HHHHHHHHHHCCCEEECCC-CchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheee-
Confidence 543 7899999999999999873 11 11 234554442 234455689999999999999998765
Q ss_pred ccCCc
Q 009146 277 RLVHI 281 (542)
Q Consensus 277 p~~~y 281 (542)
+...|
T Consensus 212 d~~~~ 216 (219)
T 3sqd_A 212 DYESY 216 (219)
T ss_dssp CTTTS
T ss_pred cchhc
Confidence 44433
No 11
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.85 E-value=2e-20 Score=185.31 Aligned_cols=204 Identities=13% Similarity=0.183 Sum_probs=144.3
Q ss_pred CCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcc--cCCCCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 56 APFSGLVICVTGLSKEARKQVMEATERLGGQYSP--DLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 56 ~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~--~Ls~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
+.-++.+|++||+.+++++.+.++|+.+||.+.. +++.+|||||+... .+.||..|+.. |+|||+++||.+|+
T Consensus 5 ~~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~----G~wIvs~~wl~~s~ 80 (235)
T 3al2_A 5 SLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAA----GKWVLHRSYLEACR 80 (235)
T ss_dssp ---CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHT----TCEEECTHHHHHHH
T ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHc----CCcCccHHHHHHHH
Confidence 3447899999999999999999999999999976 57899999999987 48999999995 89999999999999
Q ss_pred HcccCCCCCcccccccccc----CCchhhhhcccCCCCCCCCCCCccchhhhcccccccccccc-ccCCCCCCCCcEEEE
Q 009146 133 RRNVRLSESLYTVKSIDEH----GMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDS-NRSMNSTLSGCSMYV 207 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~~e~----~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~-~~~~~~lF~G~~Iyl 207 (542)
++|+++||.+|.+...... ..+... ..+.. .|... .+.++... ......+|.|++|||
T Consensus 81 ~~g~~l~E~~ye~~~~~~~d~~~~~~~~~-~~l~~--------a~~r~--------R~~l~~~~~~g~~~~lF~g~~v~l 143 (235)
T 3al2_A 81 TAGHFVQEEDYEWGSSSILDVLTGINVQQ-RRLAL--------AAMRW--------RKKIQQRQESGIVEGAFSGWKVIL 143 (235)
T ss_dssp HHTSCCCSGGGBTTSHHHHTTCTTSCHHH-HHHHH--------HHHHH--------HHHHHHHHTTTCCSSTTTTCEEEE
T ss_pred HcCCCCChhceeecCcchhccccCCChhh-hHHHH--------HHHHH--------HHHHHhcccccccCCCCCCcEEEE
Confidence 9999999999999754211 000000 00000 00000 00000000 000147999999999
Q ss_pred eCCCCHHHHHHHHHHHHhCCCEEEcccc--CCCCceEEEecCc---------hHhHHhcCCCceecHHHHHHHHHhcCcC
Q 009146 208 DSDVSEELRNKVFEAATNEGATLVNQWF--VGCGASYVVCEED---------SVQKYMGHSNNLVTPVWVLKTAKEKHVQ 276 (542)
Q Consensus 208 d~gfs~~~r~~L~~lI~~~GG~vvds~~--l~~~vTHVVv~~~---------s~kk~l~~~~~IVs~~WLlDcik~g~ll 276 (542)
... ....+.++++|+.+||+|..... ...+.||+++... .+..+...+++||+++||+|++-.+.+.
T Consensus 144 ~~~--~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewlld~i~~~~~~ 221 (235)
T 3al2_A 144 HVD--QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYIADYLMQESPP 221 (235)
T ss_dssp ECC--HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHHHHHHHCSSCC
T ss_pred ecC--CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHHHHHHhcCCCC
Confidence 543 45668899999999999987520 1134689887531 1233345789999999999999998877
Q ss_pred ccCCcC
Q 009146 277 RLVHIS 282 (542)
Q Consensus 277 p~~~ys 282 (542)
+...|-
T Consensus 222 ~~~~y~ 227 (235)
T 3al2_A 222 HVENYC 227 (235)
T ss_dssp CHHHHB
T ss_pred ChhheE
Confidence 766653
No 12
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.84 E-value=1.7e-21 Score=172.05 Aligned_cols=91 Identities=30% Similarity=0.534 Sum_probs=86.7
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
-+.++|.||+||++||++.+|..|+++|+.+||.|...++++|||||+....+.||+.|.+| +|+||+++||+||+
T Consensus 17 ~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~----~i~IVs~eWl~dsi 92 (112)
T 3l46_A 17 QGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSK----KLYVVKQEWFWGSI 92 (112)
T ss_dssp -CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCS----SCEEEEHHHHHHHH
T ss_pred cCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHC----CeeEecHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999887 89999999999999
Q ss_pred HcccCCCCCcccccc
Q 009146 133 RRNVRLSESLYTVKS 147 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~ 147 (542)
+.|.++||+.|.+..
T Consensus 93 ~~g~~ldE~~Y~~~~ 107 (112)
T 3l46_A 93 QMDARAGETMYLYEK 107 (112)
T ss_dssp HHTSCCCGGGSBCCC
T ss_pred HcCCccChhhceecc
Confidence 999999999999864
No 13
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.83 E-value=5e-20 Score=183.03 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=137.5
Q ss_pred CCCCCcEEEEeCC---ChhhHHHHHHHHHhcCCEEccc-----CC--C-------------------CceEEEEecCC-C
Q 009146 56 APFSGLVICVTGL---SKEARKQVMEATERLGGQYSPD-----LH--P-------------------QCTHLVVQSFG-G 105 (542)
Q Consensus 56 ~iF~GlvIcvtG~---~~~er~~L~~lI~~~GG~~s~~-----Ls--~-------------------~~THLVa~~~~-g 105 (542)
.+|+|+.||+++. .+..+.+|+++|+++||++..+ ++ . ..||||+.... +
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 3799999999998 4579999999999999999887 22 1 24999998754 8
Q ss_pred HHHHHHHhcCCCCCcEEEechHHHHHHHcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccc
Q 009146 106 RKFEHALKHGSRNGLYIVTLGWFVDSVRRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNAT 185 (542)
Q Consensus 106 ~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~ 185 (542)
.||..|+.+ |++||+++||.||++.++.+|+.+|.+......... ...++.+ .+ .+..
T Consensus 81 ~K~~~ala~----gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~~s~~~~-~~~~~~~-----~~--~~~~---------- 138 (241)
T 2vxb_A 81 VKYLEALAF----NIPCVHPQFIKQCLKMNRVVDFSPYLLASGYSHRLD-CTLSQRI-----EP--FDTT---------- 138 (241)
T ss_dssp HHHHHHHHH----TCCEECTHHHHHHHHHTSCCCSGGGBBEEEEETTTT-EEEECCC-----CC--CCTT----------
T ss_pred HHHHHHHHc----CCCEecHHHHHHHHHcCCcCChhhccCCCCcchhcc-chhhccc-----cC--CChh----------
Confidence 899999997 899999999999999999999999998643211100 0000000 00 0000
Q ss_pred cccccccccCCCCCCCCcEEEEeCCCCH------------HHHHHHHHHHHhCCCEE--EccccCCCCceEEEecCchHh
Q 009146 186 GKHERDSNRSMNSTLSGCSMYVDSDVSE------------ELRNKVFEAATNEGATL--VNQWFVGCGASYVVCEEDSVQ 251 (542)
Q Consensus 186 E~ld~~~~~~~~~lF~G~~Iyld~gfs~------------~~r~~L~~lI~~~GG~v--vds~~l~~~vTHVVv~~~s~k 251 (542)
..+ .........+|.|++||+-.+... +..+.+..+++.+||++ +.. .....+|+|+.+...
T Consensus 139 ~~l-~~~~~~~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~--~~~~~~d~v~~~~~~- 214 (241)
T 2vxb_A 139 DSL-YDRLLARKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPN--VAHLECDLILTMDGN- 214 (241)
T ss_dssp SCH-HHHHHHCCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSC--CSSCCCSEEECSSSC-
T ss_pred hHH-HHHHhhcCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccc--cccCCccEEEECCcc-
Confidence 000 000012368999999998333221 13478999999999999 444 344567777765422
Q ss_pred HHhcCCCceecHHHHHHHHHhcCcCc
Q 009146 252 KYMGHSNNLVTPVWVLKTAKEKHVQR 277 (542)
Q Consensus 252 k~l~~~~~IVs~~WLlDcik~g~llp 277 (542)
.....+++||+++||.+|+..|++++
T Consensus 215 ~~~~~~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 215 IVDETNCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp CCSSCSSCEECHHHHHHHHHHTSCTT
T ss_pred ccccCCCCEecHHHHHHHHHhceecC
Confidence 12257899999999999999999875
No 14
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=1.5e-20 Score=165.07 Aligned_cols=91 Identities=27% Similarity=0.518 Sum_probs=86.9
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
.+.++|.|++||++||+..+|..|+++|+.|||.|...++++|||||+....+.||+.|.+| +++||+++||+||+
T Consensus 8 ~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~----~i~IV~~~Wl~dsi 83 (109)
T 2cou_A 8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSK----KLFVVKQEWFWGSI 83 (109)
T ss_dssp SCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCT----TSEEECHHHHHHHH
T ss_pred ccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHC----CCeEecHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999987 79999999999999
Q ss_pred HcccCCCCCcccccc
Q 009146 133 RRNVRLSESLYTVKS 147 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~ 147 (542)
+.|.++||..|.+..
T Consensus 84 ~~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 84 QMDARAGETMYLYEK 98 (109)
T ss_dssp HTTSCCCGGGTBCCC
T ss_pred HcCCcCChhccCCCC
Confidence 999999999999864
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.77 E-value=8.8e-19 Score=152.77 Aligned_cols=91 Identities=24% Similarity=0.462 Sum_probs=82.6
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEe---cCCCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQ---SFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~---~~~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
...++|.|++||++|+.+.+|..|+++|+.+||++..+++++||||||. ...+.||+.|.++ ||+||+++||.
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~----gi~IV~~~Wl~ 86 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKER----GVHIVSEHWLL 86 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHT----TCEEECHHHHH
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHC----CCeEecHHHHH
Confidence 5678999999999999989999999999999999999999999999994 3457999999996 89999999999
Q ss_pred HHHHcccCCCCCcccccc
Q 009146 130 DSVRRNVRLSESLYTVKS 147 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l~~ 147 (542)
||+++|+++||.+|.+..
T Consensus 87 ~c~~~~~~l~e~~Y~~~~ 104 (107)
T 3l3e_A 87 DCAQECKHLPESLYPHTY 104 (107)
T ss_dssp HHHHHTSCCCGGGCCTTC
T ss_pred HHHHhCCCCchhhCCCCC
Confidence 999999999999998764
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.5e-18 Score=155.10 Aligned_cols=92 Identities=25% Similarity=0.432 Sum_probs=86.9
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
....+|.|++|||||+...+|..|+++|+.|||+|..++++.||||||....+.||++|.++ +|+||+++||.||+
T Consensus 18 ~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~----gi~IV~~~Wl~d~~ 93 (129)
T 2d8m_A 18 ELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGL----GGRIVRKEWVLDCH 93 (129)
T ss_dssp HHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHH----TCEEEETHHHHHHH
T ss_pred CccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHC----CCcEecHHHHHHHH
Confidence 34678999999999999889999999999999999999999999999999999999999997 89999999999999
Q ss_pred HcccCCCCCccccccc
Q 009146 133 RRNVRLSESLYTVKSI 148 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~ 148 (542)
++++++||..|.+...
T Consensus 94 ~~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 94 RMRRRLPSQRYLMAGP 109 (129)
T ss_dssp HTTSCCCGGGGBCSSS
T ss_pred HhCCcCChHhcccCCC
Confidence 9999999999998753
No 17
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.74 E-value=2.5e-18 Score=168.67 Aligned_cols=193 Identities=17% Similarity=0.292 Sum_probs=135.0
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHHHHccc
Q 009146 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRRNV 136 (542)
Q Consensus 58 F~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~g~ 136 (542)
-+++.|++||+.+.+ +.++|..+||.+..+++ +|||||+... .+.||..|+.+ |++||+++||.+|++.|+
T Consensus 6 ~~~~~v~fSG~~~~~---~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~----g~~IVs~~Wl~~~~~~~~ 77 (220)
T 3l41_A 6 SKRVYITFTGYDKKP---SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPY----GPCVVTMDWINSCLKTHE 77 (220)
T ss_dssp -CCEEEEECSCSSCC---CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGG----CCEEECHHHHHHHHHHTS
T ss_pred cceEEEEEeccCCCC---CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCC----CCeEEEhHHHHhhhhhhh
Confidence 457899999999865 38999999999999985 6999999877 58999999996 799999999999999999
Q ss_pred CCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCC-HHH
Q 009146 137 RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS-EEL 215 (542)
Q Consensus 137 ~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs-~~~ 215 (542)
++||.+|.+.+..... ..++. +...+... ......+|+|+.|||.+.+. ...
T Consensus 78 ~l~e~~y~l~d~~~e~--------~~~~~------l~~~~~ra-------------r~~~~~LF~G~~f~it~~~~~~p~ 130 (220)
T 3l41_A 78 IVDEEPYLLNDPEKEL--------ELGCT------LESALKRA-------------RAQGPSLLEDYVVYLTSKTVAPEN 130 (220)
T ss_dssp CCCSGGGBCCCHHHHH--------HHTSC------HHHHHHHH-------------HHHCSCTTTTSEEEEETTSSCGGG
T ss_pred ccccCccccCCcHHHh--------hcccc------HHHHHHHH-------------HhcCchhhhheeEEEeccccCCCC
Confidence 9999999987532100 00000 00000000 00125799999999966661 344
Q ss_pred HHHHHHHHHhCCCEEEccc-cC-------CCCceEEEecCchH---hHHh---c--CCCceecHHHHHHHHHhcCcCccC
Q 009146 216 RNKVFEAATNEGATLVNQW-FV-------GCGASYVVCEEDSV---QKYM---G--HSNNLVTPVWVLKTAKEKHVQRLV 279 (542)
Q Consensus 216 r~~L~~lI~~~GG~vvds~-~l-------~~~vTHVVv~~~s~---kk~l---~--~~~~IVs~~WLlDcik~g~llp~~ 279 (542)
++.|..+|+.+||++...- +. ..+-.+||....+. .++. . ..+.||+.+||+++|-++++--..
T Consensus 131 ~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~~~~~i~~~e~ll~~il~q~l~~~~ 210 (220)
T 3l41_A 131 VPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQNKTIFLQNYDWLIKTVLRQEIDVND 210 (220)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTCTTEEEEEHHHHHHHHHHTCCCTTC
T ss_pred CceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhccccccceEEEechhHHHHHHHHHHcCcch
Confidence 7899999999999999810 00 01113454443322 1221 1 345699999999999998876666
Q ss_pred CcChHH
Q 009146 280 HISADL 285 (542)
Q Consensus 280 ~ys~dl 285 (542)
++++..
T Consensus 211 ~~~~~~ 216 (220)
T 3l41_A 211 RIADEF 216 (220)
T ss_dssp CBCGGG
T ss_pred HHHHHH
Confidence 665543
No 18
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=3.9e-18 Score=143.53 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=77.4
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCC--CCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH--PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls--~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~D 130 (542)
+.+.+|+|++||++|+....+..|+++|+.+||++..+++ +.+||||+....+.|+..+ .+++||+|+||.|
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~------~~~~iV~~~Wi~d 76 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF------ANYKVVSPDWIVD 76 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT------TTSCEECTHHHHH
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc------CCCCEEcccHHHH
Confidence 6788999999999998877899999999999999999999 8999999999888775433 3799999999999
Q ss_pred HHHcccCCCCCcccc
Q 009146 131 SVRRNVRLSESLYTV 145 (542)
Q Consensus 131 ci~~g~~Lde~~Y~l 145 (542)
|+++++++||.+|.+
T Consensus 77 ci~~~~~l~e~~Y~l 91 (92)
T 4id3_A 77 SVKEARLLPWQNYSL 91 (92)
T ss_dssp HHHHTSCCCGGGGBC
T ss_pred HHHcCCcCChhhccc
Confidence 999999999999986
No 19
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.72 E-value=8.7e-18 Score=143.45 Aligned_cols=88 Identities=23% Similarity=0.398 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCC-CCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls-~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
...++|+|++||++|+...++..|+++|..|||+|..+++ ..+||||+.+..+.||+.+. +++||+|+||.||
T Consensus 8 ~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~------~~~iV~p~Wl~dc 81 (97)
T 2ebw_A 8 TSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK------GEKVIRPEWIVES 81 (97)
T ss_dssp CCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS------SSCCBCTHHHHHH
T ss_pred CCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc------CCCEeChHHHHHH
Confidence 5778999999999999888899999999999999999887 59999999999889987652 6999999999999
Q ss_pred HHcccCCCCCccccc
Q 009146 132 VRRNVRLSESLYTVK 146 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~ 146 (542)
+++|+++|+.+|.+.
T Consensus 82 i~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 82 IKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHTSCCCSGGGBSC
T ss_pred HHcCCccCchHcEec
Confidence 999999999999863
No 20
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.65 E-value=2.9e-16 Score=160.56 Aligned_cols=93 Identities=39% Similarity=0.617 Sum_probs=87.2
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCC-CCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLH-PQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls-~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
...++|+|++||+||+.+.+|..|+++|+.+||+|+.+++ ++|||||+....+.||+.|.+| ||+||+++||.||
T Consensus 195 ~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~----gi~IV~~~Wl~ds 270 (298)
T 3olc_X 195 FKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRW----NVHCVTTQWFFDS 270 (298)
T ss_dssp GBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHT----TCEEECHHHHHHH
T ss_pred ccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHC----CCeEEeHHHHHHH
Confidence 4678999999999999999999999999999999999999 7999999999999999999997 7999999999999
Q ss_pred HHcccCCCCCcccccccc
Q 009146 132 VRRNVRLSESLYTVKSID 149 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~~ 149 (542)
+++|+++||.+|.+....
T Consensus 271 i~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 271 IEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHTSCCCGGGSBSCC--
T ss_pred HHCCCCCCchhcCCCCCc
Confidence 999999999999997543
No 21
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.64 E-value=4.9e-16 Score=136.07 Aligned_cols=93 Identities=20% Similarity=0.319 Sum_probs=83.4
Q ss_pred CCCCCCCcEEEEeCCCh----hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 54 ANAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~----~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
-.++|+|++++|..+.. .....+..++..+||++...+++.+||||+.+..+.||++|.+| +|+||+++||.
T Consensus 4 ~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~----~i~iV~~~Wv~ 79 (107)
T 3pa6_A 4 AAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKR----GVKLVSVLWVE 79 (107)
T ss_dssp CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHH----TCEEECHHHHH
T ss_pred cccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcC----CCEEECHHHHH
Confidence 35699999999987753 23578999999999999999999999999999888999999998 79999999999
Q ss_pred HHHHcccCCCCCccccccccc
Q 009146 130 DSVRRNVRLSESLYTVKSIDE 150 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l~~~~e 150 (542)
||+++|+++||.+|.+..+.+
T Consensus 80 ~C~~~~~~vdE~~Y~i~~~~~ 100 (107)
T 3pa6_A 80 KCRTAGAHIDESLFPAANMNE 100 (107)
T ss_dssp HHHHHTSCCCGGGSBCCCTTT
T ss_pred HHHHhCccCChhcccCCCCcc
Confidence 999999999999999875543
No 22
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.58 E-value=7.6e-15 Score=127.86 Aligned_cols=92 Identities=17% Similarity=0.271 Sum_probs=85.4
Q ss_pred CCCCCCCCcEEEEeCCC-hhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~-~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
..+.+|.|++|++++.. ..+|..|+.+|..+||.+..+++.++||+|+....+.|++.|++. ..++++|+|+||++|
T Consensus 3 ~Lpd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~--~p~~~~V~P~WI~~C 80 (104)
T 3pc6_A 3 ELPDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALME--NPSLAFVRPRWIYSC 80 (104)
T ss_dssp CCCCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTT--CTTCEEECHHHHHHH
T ss_pred CcchhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhh--CCCCeEEccHHHHHH
Confidence 56789999999999988 589999999999999999999999999999999999999988864 368999999999999
Q ss_pred HHcccCCCCCccccc
Q 009146 132 VRRNVRLSESLYTVK 146 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~ 146 (542)
+++++++++++|.+.
T Consensus 81 i~~~klvp~~~y~~~ 95 (104)
T 3pc6_A 81 NEKQKLLPHQLYGVV 95 (104)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HhcCccCCcccceec
Confidence 999999999999885
No 23
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.58 E-value=9.5e-15 Score=132.11 Aligned_cols=93 Identities=18% Similarity=0.312 Sum_probs=79.4
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
.+..+|+||+|+++|+....+..|..+|..+||++...++..+||||+.+.. .+++.+.+. ...+++||+++||.||+
T Consensus 36 ~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~-~~~~~~~~~-~~~~~~iV~~~Wv~dsi 113 (132)
T 1wf6_A 36 APEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYD-DELKQFWNK-SAHRPHVVGAKWLLECF 113 (132)
T ss_dssp CCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCC-SHHHHHHHH-SCCCCCEEEHHHHHHHH
T ss_pred ccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCch-HHHHHHHHh-hCCCCeEechHHHHHHH
Confidence 4568999999999999999999999999999999999999999999998753 344444321 01479999999999999
Q ss_pred HcccCCCCCcccccc
Q 009146 133 RRNVRLSESLYTVKS 147 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~ 147 (542)
++|+++||..|.+..
T Consensus 114 ~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 114 SKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHSSCCCSGGGBCCC
T ss_pred HcCCcCCHhhccCCC
Confidence 999999999998764
No 24
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.53 E-value=2.8e-14 Score=129.02 Aligned_cols=96 Identities=15% Similarity=0.255 Sum_probs=81.3
Q ss_pred ccccccccccCCCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc--hHhHHh---cCCCc
Q 009146 185 TGKHERDSNRSMNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED--SVQKYM---GHSNN 259 (542)
Q Consensus 185 ~E~ld~~~~~~~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~--s~kk~l---~~~~~ 259 (542)
++++|......+..+|+||+||| .|+....+..|.++|+.+||++++. ++..+||||+.+. ++++++ ..+++
T Consensus 26 ~~~~d~~~~~~~~~lF~g~~i~i-~G~~~~~~~~L~~~i~~~Gg~v~~~--l~~~vTHvI~~~~~~~~~~~~~~~~~~~~ 102 (132)
T 1wf6_A 26 LENLDVSAFQAPEDLLDGCRIYL-CGFSGRKLDKLRRLINSGGGVRFNQ--LNEDVTHVIVGDYDDELKQFWNKSAHRPH 102 (132)
T ss_dssp STTCCGGGCCCCTTTTTTCEEEE-ESCCSHHHHHHHHHHHHTTCEEESS--CCSSCCEEEESSCCSHHHHHHHHSCCCCC
T ss_pred hhhcCcccccccccccCCEEEEE-ECCChHHHHHHHHHHHHCCCEEeCc--CCCCCeEEEECCchHHHHHHHHhhCCCCe
Confidence 34555555556688999999999 7999999999999999999999998 5799999999763 455554 25789
Q ss_pred eecHHHHHHHHHhcCcCccCCcCh
Q 009146 260 LVTPVWVLKTAKEKHVQRLVHISA 283 (542)
Q Consensus 260 IVs~~WLlDcik~g~llp~~~ys~ 283 (542)
||+++||+||+++|+++|+..|.+
T Consensus 103 iV~~~Wv~dsi~~~~ll~e~~Y~~ 126 (132)
T 1wf6_A 103 VVGAKWLLECFSKGYMLSEEPYIH 126 (132)
T ss_dssp EEEHHHHHHHHHHSSCCCSGGGBC
T ss_pred EechHHHHHHHHcCCcCCHhhccC
Confidence 999999999999999999999954
No 25
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.53 E-value=1e-14 Score=155.80 Aligned_cols=89 Identities=21% Similarity=0.357 Sum_probs=83.0
Q ss_pred CCCCCCCcEEEEeCCChh----hHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHH
Q 009146 54 ANAPFSGLVICVTGLSKE----ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFV 129 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~~----er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~ 129 (542)
..++|.||+||+||+.+. +|..|.++|+.+||+|..+++++||||||....+.||+.|.+++ +|+||+++||.
T Consensus 349 k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g---~IkIVs~~WL~ 425 (442)
T 3ef1_A 349 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMG---NIKVVKLNWLT 425 (442)
T ss_dssp HHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHS---SSEEEEHHHHH
T ss_pred hhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcC---CCEEEeHHHHH
Confidence 457999999999998752 67899999999999999999999999999999999999999983 79999999999
Q ss_pred HHHHcccCCCCCcccc
Q 009146 130 DSVRRNVRLSESLYTV 145 (542)
Q Consensus 130 Dci~~g~~Lde~~Y~l 145 (542)
+|++.|+++||.+|.+
T Consensus 426 dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 426 ESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHTSCCCGGGTBC
T ss_pred HHHHcCCcCChhcccc
Confidence 9999999999999986
No 26
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.2e-14 Score=150.80 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=82.3
Q ss_pred CCCCCCcEEEEeCCCh----hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHH
Q 009146 55 NAPFSGLVICVTGLSK----EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVD 130 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~----~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~D 130 (542)
.++|+|++||+||+.+ .++..+.++|+.+||+++.++++.||||||....+.||++|.++ +||+||+++||.+
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~---~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSM---GNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHS---SSCCEEEHHHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhc---CCCEEEcHHHHHH
Confidence 4799999999999874 35789999999999999999999999999999999999999997 4899999999999
Q ss_pred HHHcccCCCCCcccc
Q 009146 131 SVRRNVRLSESLYTV 145 (542)
Q Consensus 131 ci~~g~~Lde~~Y~l 145 (542)
|++.++++||.+|.+
T Consensus 357 c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 357 SLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHTTSCCCGGGGBC
T ss_pred HHHhCCcCChhhcee
Confidence 999999999999976
No 27
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=3.6e-14 Score=119.13 Aligned_cols=83 Identities=16% Similarity=0.333 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCC--CCceEEEecCchHhHHh-cCCCceecHHHHHHHHHhc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVG--CGASYVVCEEDSVQKYM-GHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~--~~vTHVVv~~~s~kk~l-~~~~~IVs~~WLlDcik~g 273 (542)
..+|+|++||+ .|++...+..|.++|+.+||++... ++ .++||||+......|+. ..+++||+++||+||+++|
T Consensus 5 ~~~f~g~~~~i-~g~~~~~~~~l~~~i~~~GG~~~~~--~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~~~ 81 (92)
T 4id3_A 5 SKIFKNCVIYI-NGYTKPGRLQLHEMIVLHGGKFLHY--LSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKEA 81 (92)
T ss_dssp -CTTTTCEEEE-CSCCSSCHHHHHHHHHHTTCEEESS--CCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHHHT
T ss_pred ccccCCEEEEE-eCCCCcCHHHHHHHHHHCCCEEEEE--ecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHHcC
Confidence 57999999999 8876667889999999999999998 45 78999999886555543 3689999999999999999
Q ss_pred CcCccCCcC
Q 009146 274 HVQRLVHIS 282 (542)
Q Consensus 274 ~llp~~~ys 282 (542)
+++|+.+|.
T Consensus 82 ~~l~e~~Y~ 90 (92)
T 4id3_A 82 RLLPWQNYS 90 (92)
T ss_dssp SCCCGGGGB
T ss_pred CcCChhhcc
Confidence 999999885
No 28
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.48 E-value=5.3e-14 Score=124.13 Aligned_cols=85 Identities=13% Similarity=0.124 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh---cCCCceecHHHHHHHHHh
Q 009146 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 196 ~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l---~~~~~IVs~~WLlDcik~ 272 (542)
+-..|.||+|++ +||++.+++.|+++|+.+||++... ++..|||||+.....+||. .++++||+++||+||+++
T Consensus 18 ~~p~F~g~~Ic~-sGf~~~er~~l~~~i~~~GG~~~~~--l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~dsi~~ 94 (112)
T 3l46_A 18 GVPPFQDCILSF-LGFSDEEKTNMEEMTEMQGGKYLPL--GDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFWGSIQM 94 (112)
T ss_dssp CCCTTTTCEECE-ESCCHHHHHHHHHHHHHTTCEECCT--TCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHHHHHHH
T ss_pred CCCccCCeEEEE-eCCCHHHHHHHHHHHHHcCCEECcc--cCCCceEEEecCCchhhHHHHHHCCeeEecHHHHHHHHHc
Confidence 356899999999 9999999999999999999999998 6999999999987666654 589999999999999999
Q ss_pred cCcCccCCcCh
Q 009146 273 KHVQRLVHISA 283 (542)
Q Consensus 273 g~llp~~~ys~ 283 (542)
|..+++..|..
T Consensus 95 g~~ldE~~Y~~ 105 (112)
T 3l46_A 95 DARAGETMYLY 105 (112)
T ss_dssp TSCCCGGGSBC
T ss_pred CCccChhhcee
Confidence 99999999865
No 29
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.47 E-value=4.1e-14 Score=123.97 Aligned_cols=85 Identities=12% Similarity=0.143 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh---cCCCceecHHHHHHHHHh
Q 009146 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM---GHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 196 ~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l---~~~~~IVs~~WLlDcik~ 272 (542)
+..+|.||+||+ +||+..++..|.++|+.+||++... ++.++||||+......+|. .++++||+++||+||+++
T Consensus 9 ~~~~F~g~~i~~-sg~~~~~r~~l~~~i~~~GG~~~~~--~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~ 85 (109)
T 2cou_A 9 KVPPFQDCILSF-LGFSDEEKHSMEEMTEMQGGSYLPV--GDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQM 85 (109)
T ss_dssp CCCTTTTCBEEE-ESSCHHHHHHHHHHHHHHTCBCCCT--TCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHT
T ss_pred cCCcCCCeEEEe-cCCCHHHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHc
Confidence 357899999999 9999999999999999999999987 6999999999886555553 588999999999999999
Q ss_pred cCcCccCCcCh
Q 009146 273 KHVQRLVHISA 283 (542)
Q Consensus 273 g~llp~~~ys~ 283 (542)
|+++++..|..
T Consensus 86 g~~ldE~~Y~~ 96 (109)
T 2cou_A 86 DARAGETMYLY 96 (109)
T ss_dssp TSCCCGGGTBC
T ss_pred CCcCChhccCC
Confidence 99999999954
No 30
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=116.10 Aligned_cols=85 Identities=11% Similarity=0.246 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHh-cCCCceecHHHHHHHHHhcC
Q 009146 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYM-GHSNNLVTPVWVLKTAKEKH 274 (542)
Q Consensus 196 ~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l-~~~~~IVs~~WLlDcik~g~ 274 (542)
...+|+|+.||+ .|+....+..|+++|+.+||++...+ ....+||||+......|+. ..+++||+++||+||+++|+
T Consensus 9 ~~~lF~g~~~~i-sg~~~~~~~~L~~~i~~~GG~~~~~~-~~~~~THlI~~~~~~~k~~~~~~~~iV~p~Wl~dci~~~~ 86 (97)
T 2ebw_A 9 SSTIFSGVAIYV-NGYTDPSAEELRKLMMLHGGQYHVYY-SRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGR 86 (97)
T ss_dssp CCCTTTTCEEEE-CSSCSSCHHHHHHHHHHTTCEECSSC-CSSSCCEEECSCCCTTHHHHTSSSCCBCTHHHHHHHHHTS
T ss_pred CCCCCCCeEEEE-eCCCcccHHHHHHHHHHcCCEEeeec-CCCCCEEEEecCCChHHHHHhcCCCEeChHHHHHHHHcCC
Confidence 367999999999 88877778999999999999988763 2368999999885444433 24899999999999999999
Q ss_pred cCccCCcC
Q 009146 275 VQRLVHIS 282 (542)
Q Consensus 275 llp~~~ys 282 (542)
++|+.+|.
T Consensus 87 ~l~~~~Y~ 94 (97)
T 2ebw_A 87 LLSYIPYQ 94 (97)
T ss_dssp CCCSGGGB
T ss_pred ccCchHcE
Confidence 99999884
No 31
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.35 E-value=2.5e-12 Score=111.98 Aligned_cols=84 Identities=11% Similarity=0.241 Sum_probs=70.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhc--CCCceecHHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMG--HSNNLVTPVWVLKTAK 271 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~--~~~~IVs~~WLlDcik 271 (542)
.++|.|++|||+..++..+++.|.++|.++||.+.+. .+.++||||+..+ +++..+. .+..+|+|.||++|++
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~--~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~ 82 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDY--MNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNE 82 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSS--CCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcc--cCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHh
Confidence 5799999999944454678999999999999998887 5889999999874 3444342 4689999999999999
Q ss_pred hcCcCccCCcC
Q 009146 272 EKHVQRLVHIS 282 (542)
Q Consensus 272 ~g~llp~~~ys 282 (542)
+++++|+.+|-
T Consensus 83 ~~klvp~~~y~ 93 (104)
T 3pc6_A 83 KQKLLPHQLYG 93 (104)
T ss_dssp HTSCCCGGGGB
T ss_pred cCccCCcccce
Confidence 99999999884
No 32
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.34 E-value=1.7e-12 Score=112.81 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC---c---hHhHHhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---D---SVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~---~---s~kk~l~~~~~IVs~~WLlDci 270 (542)
..+|.|++|+| .|+.+..+..|.++|+.+||++..+ .+.++||||+.. . .+++....+++||+++||.||+
T Consensus 13 ~~~l~g~~i~i-sg~~~~~r~~l~~li~~~Gg~v~~~--~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~Wl~~c~ 89 (107)
T 3l3e_A 13 PKPLHKVVVCV-SKKLSKKQSELNGIAASLGADYRRS--FDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHWLLDCA 89 (107)
T ss_dssp -CTTTTCEEEE-CGGGGGGHHHHHHHHHHTTCEEESS--CCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHHHHHHH
T ss_pred cCCCCCeEEEE-eCCChHhHHHHHHHHHHcCCEEecc--ccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHHHHHHH
Confidence 57999999999 7877678999999999999999998 588999999943 1 2334446899999999999999
Q ss_pred HhcCcCccCCcCh
Q 009146 271 KEKHVQRLVHISA 283 (542)
Q Consensus 271 k~g~llp~~~ys~ 283 (542)
++|+++|+.+|++
T Consensus 90 ~~~~~l~e~~Y~~ 102 (107)
T 3l3e_A 90 QECKHLPESLYPH 102 (107)
T ss_dssp HHTSCCCGGGCCT
T ss_pred HhCCCCchhhCCC
Confidence 9999999999975
No 33
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=7.8e-12 Score=112.47 Aligned_cols=85 Identities=16% Similarity=0.261 Sum_probs=74.7
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhH---HhcCCCceecHHHHHHHHHhc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQK---YMGHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk---~l~~~~~IVs~~WLlDcik~g 273 (542)
..+|.|++|+| +|+....+..|.++|+.+||++... ++.++||||+......| ....+++||+++||++|++.+
T Consensus 20 ~~~f~g~~i~i-tG~~~~~r~~l~~~i~~~Gg~v~~~--~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~ 96 (129)
T 2d8m_A 20 GKILQGVVVVL-SGFQNPFRSELRDKALELGAKYRPD--WTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMR 96 (129)
T ss_dssp TTTSTTEEEEE-ESCCTTHHHHHHHHHHHTTEEEESS--CCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTT
T ss_pred cccCCCeEEEE-eCCCcHHHHHHHHHHHHcCCEEeCC--cCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhC
Confidence 56899999999 8888778999999999999999998 58899999999854444 345799999999999999999
Q ss_pred CcCccCCcChH
Q 009146 274 HVQRLVHISAD 284 (542)
Q Consensus 274 ~llp~~~ys~d 284 (542)
+++++.+|...
T Consensus 97 ~~l~e~~Y~l~ 107 (129)
T 2d8m_A 97 RRLPSQRYLMA 107 (129)
T ss_dssp SCCCGGGGBCS
T ss_pred CcCChHhcccC
Confidence 99999998654
No 34
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.22 E-value=1.5e-11 Score=104.81 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 54 ANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
+..+|.|++||+||.....|.+++++|+.+||.+..+++++++|||++...|.|+++|.++ ||+||+.+|+.+++.
T Consensus 4 ~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~l----gI~Ii~E~~f~~~l~ 79 (92)
T 1l7b_A 4 GGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL----GVPTLTEEELYRLLE 79 (92)
T ss_dssp CCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCS----SSCCEEHHHHHHHHH
T ss_pred CCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHc----CCcEEeHHHHHHHHH
Confidence 5677999999999977669999999999999999999999999999999999999999997 899999999999986
Q ss_pred c
Q 009146 134 R 134 (542)
Q Consensus 134 ~ 134 (542)
.
T Consensus 80 ~ 80 (92)
T 1l7b_A 80 A 80 (92)
T ss_dssp H
T ss_pred h
Confidence 3
No 35
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.6e-11 Score=104.83 Aligned_cols=82 Identities=11% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccc---------cCCCCceEEEecCchHhHHhcCCCceecHHHH
Q 009146 196 MNSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQW---------FVGCGASYVVCEEDSVQKYMGHSNNLVTPVWV 266 (542)
Q Consensus 196 ~~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~---------~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WL 266 (542)
...+|+|++|||....+ +..|+.+|+++||.++.+. ..+..+||+|+..+..++ ...+..+|+|+||
T Consensus 9 ~~~LF~g~~F~i~~e~p---~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-~~~~r~~VqPqWV 84 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP---REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-SVIGRCYVQPQWV 84 (100)
T ss_dssp SCCTTSSCEEECCSSSC---HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-CBTTBEEECTHHH
T ss_pred hHHHcCCcEEEEecCCC---HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-hcCCCeEEcchHH
Confidence 36899999999954443 5778899999999998751 125789999998865433 2245589999999
Q ss_pred HHHHHhcCcCccCCc
Q 009146 267 LKTAKEKHVQRLVHI 281 (542)
Q Consensus 267 lDcik~g~llp~~~y 281 (542)
+||+++++++|+.+|
T Consensus 85 ~Dcin~~~lLp~~~Y 99 (100)
T 2ep8_A 85 FDSVNARLLLPVAEY 99 (100)
T ss_dssp HHHHHHTSCCCTTTC
T ss_pred HHHHhcCCcCChhhc
Confidence 999999999999987
No 36
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.16 E-value=3.5e-11 Score=105.20 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=70.1
Q ss_pred CCCCCCcEEEEeCCCC--H-HHHHHHHHHHHhCCCEEEccccCCCCceEEEecCch---HhHHhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVS--E-ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS---VQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs--~-~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s---~kk~l~~~~~IVs~~WLlDci 270 (542)
..+|+|+++|++..-. . ...+.+..+++.+||++++. ++..+||||+.+.. .++...++++||++.||++|+
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~--l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C~ 82 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKT--FNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKCR 82 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSS--CCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecc--cCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHHH
Confidence 4589999999953221 1 23468999999999999999 58899999998743 344445789999999999999
Q ss_pred HhcCcCccCCcChH
Q 009146 271 KEKHVQRLVHISAD 284 (542)
Q Consensus 271 k~g~llp~~~ys~d 284 (542)
++|+++++.+|.+.
T Consensus 83 ~~~~~vdE~~Y~i~ 96 (107)
T 3pa6_A 83 TAGAHIDESLFPAA 96 (107)
T ss_dssp HHTSCCCGGGSBCC
T ss_pred HhCccCChhcccCC
Confidence 99999999999764
No 37
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.3e-11 Score=102.37 Aligned_cols=82 Identities=24% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEccc-----------CCCCceEEEEecCCCHHHHHHHhcCCCCCcE
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPD-----------LHPQCTHLVVQSFGGRKFEHALKHGSRNGLY 121 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~-----------Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~ 121 (542)
....+|+|++|++.+- ..|..|+.+|..+||.+..+ .+..+||+|+..+...+ +. .+..
T Consensus 8 ~~~~LF~g~~F~i~~e--~p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~-----~~---~~r~ 77 (100)
T 2ep8_A 8 KHKKLFEGLKFFLNRE--VPREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT-----SV---IGRC 77 (100)
T ss_dssp CSCCTTSSCEEECCSS--SCHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC-----CB---TTBE
T ss_pred chHHHcCCcEEEEecC--CCHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh-----hc---CCCe
Confidence 4678999999999763 45789999999999999876 24689999998764322 11 4679
Q ss_pred EEechHHHHHHHcccCCCCCccc
Q 009146 122 IVTLGWFVDSVRRNVRLSESLYT 144 (542)
Q Consensus 122 IV~p~WI~Dci~~g~~Lde~~Y~ 144 (542)
+|.|+||+||+.++++||+.+|.
T Consensus 78 ~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 78 YVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp EECTHHHHHHHHHTSCCCTTTCC
T ss_pred EEcchHHHHHHhcCCcCChhhcC
Confidence 99999999999999999999984
No 38
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.14 E-value=1.5e-10 Score=101.62 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEEEechHHHH
Q 009146 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~IV~p~WI~D 130 (542)
....+|.|.+|||||... -.|.+++++|+.+||.+..++++.++|||++...+ .|+++|.++ ||+||+.+|+.+
T Consensus 28 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l----gI~Ii~E~~f~~ 103 (109)
T 2k6g_A 28 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL----GTKIIDEDGLLN 103 (109)
T ss_dssp CCTTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH----TCEEECHHHHHH
T ss_pred CCCCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc----CCeEEeHHHHHH
Confidence 445689999999999764 58999999999999999999999999999999888 999999997 899999999999
Q ss_pred HHHcc
Q 009146 131 SVRRN 135 (542)
Q Consensus 131 ci~~g 135 (542)
.+..+
T Consensus 104 ll~~~ 108 (109)
T 2k6g_A 104 LIRNL 108 (109)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 98754
No 39
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.13 E-value=5.9e-11 Score=100.14 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=62.4
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHHhcCCCceecHHHHHHHHHhcCcC
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKYMGHSNNLVTPVWVLKTAKEKHVQ 276 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~l~~~~~IVs~~WLlDcik~g~ll 276 (542)
.++|.|++|||..+++.. ..|.++|.++||.+++.. ...++||||...+ ...+..+|+|+||+|||++|+++
T Consensus 14 pdiFsg~~~~l~~~v~~~--~~l~RyiiAfgG~v~~~~-~~~~vTHvI~~~~-----~~~~~~~V~p~WI~dcI~k~~Ll 85 (88)
T 3pc7_A 14 LDIFTGVRLYLPPSTPDF--SRLRRYFVAFDGDLVQEF-DMTSATHVLGSRD-----KNPAAQQVSPEWIWACIRKRRLV 85 (88)
T ss_dssp CCCSTTCEECCCTTSTTH--HHHHHHHHHTTCEECCGG-GGGGCSEEESCCT-----TCTTSEEECHHHHHHHHHHTSCC
T ss_pred ChhhcCeEEEccCCcCch--hhheeeeeecCCEEeccc-CCCcCeEEecCCC-----cCCCCcEEchHHHHHHHhCCccc
Confidence 689999999997677654 789999999999998863 3458999998764 24677899999999999999999
Q ss_pred cc
Q 009146 277 RL 278 (542)
Q Consensus 277 p~ 278 (542)
|.
T Consensus 86 ~~ 87 (88)
T 3pc7_A 86 AP 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 40
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.2e-10 Score=101.99 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEe-CCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhc-------CCCceecH
Q 009146 195 SMNSTLSGCSMYVD-SDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMG-------HSNNLVTP 263 (542)
Q Consensus 195 ~~~~lF~G~~Iyld-~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~-------~~~~IVs~ 263 (542)
.+..+|.|++|||. .++....++.+.++++++||+|++. +++.+||||+.+. ++.+++. .+.+||+.
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~--ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i 93 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENE--LSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDV 93 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSS--CCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEH
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeec--cCCCcCEEEecCCCHHHHHHHHhccccccccccEEeec
Confidence 45789999999994 4677789999999999999999999 5999999999763 3454442 36899999
Q ss_pred HHHHHHHHhcCcCccCCc
Q 009146 264 VWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 264 ~WLlDcik~g~llp~~~y 281 (542)
.||.+|+++|.++++..+
T Consensus 94 ~Wl~esmk~g~lv~ee~~ 111 (120)
T 2coe_A 94 SWLIECIGAGKPVEMTGK 111 (120)
T ss_dssp HHHHHHHHTTSCCCCSSS
T ss_pred HHHHHHHHcCCccCcccc
Confidence 999999999999998765
No 41
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=6.5e-10 Score=97.89 Aligned_cols=78 Identities=23% Similarity=0.350 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEEEechHHHH
Q 009146 53 PANAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYIVTLGWFVD 130 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~IV~p~WI~D 130 (542)
....+|.|++|||||... -.|.+++++|+.+||++...++++++|||++...+ .|+++|.++ ||+||+.+|+.+
T Consensus 18 ~~~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~l----gI~IisE~~f~~ 93 (112)
T 2ebu_A 18 GAENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL----GTKIIDEDGLLN 93 (112)
T ss_dssp CCSSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHH----TCEEEEHHHHHH
T ss_pred CCCCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHc----CCeEEeHHHHHH
Confidence 445689999999999775 58999999999999999999999999999999887 999999997 899999999999
Q ss_pred HHHc
Q 009146 131 SVRR 134 (542)
Q Consensus 131 ci~~ 134 (542)
.+..
T Consensus 94 ll~~ 97 (112)
T 2ebu_A 94 LIRT 97 (112)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9974
No 42
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.02 E-value=7.9e-10 Score=110.85 Aligned_cols=92 Identities=12% Similarity=0.122 Sum_probs=71.6
Q ss_pred CCCCCCCcEEEEeCCCh----------hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC-HHHHHHHhcCCCCCcEE
Q 009146 54 ANAPFSGLVICVTGLSK----------EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG-RKFEHALKHGSRNGLYI 122 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~----------~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g-~Ky~~A~k~g~~~gI~I 122 (542)
+..+|+||+|.+.++.. .....++.+|..+||++...++..+||+|+..... .+...+++.....+++|
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~i 240 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFKI 240 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCEE
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCEE
Confidence 45799999999976531 13345688999999999999999999999987543 22233333222357899
Q ss_pred EechHHHHHHHcccCCCCCcccc
Q 009146 123 VTLGWFVDSVRRNVRLSESLYTV 145 (542)
Q Consensus 123 V~p~WI~Dci~~g~~Lde~~Y~l 145 (542)
|+++||.||+++|+++||.+|.+
T Consensus 241 V~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 241 LKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EETHHHHHHHHTTSCCCGGGTBC
T ss_pred eChHHHHHHHHcCCcCCHhhCCC
Confidence 99999999999999999999964
No 43
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.00 E-value=1.1e-10 Score=101.94 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=67.5
Q ss_pred CCCCCCCcEEEEeC-CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc----hHhHHh-----cCCCceecHHH
Q 009146 196 MNSTLSGCSMYVDS-DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYM-----GHSNNLVTPVW 265 (542)
Q Consensus 196 ~~~lF~G~~Iyld~-gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~----s~kk~l-----~~~~~IVs~~W 265 (542)
++.+|.||+|||.+ +.....++.....++.+||++++. +++++||||+.+. +..+++ ..+++||++.|
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~--~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~~~W 85 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPA--QGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVKSAW 85 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCST--TCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEEHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeec--cCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEecCch
Confidence 47899999999943 344445667777999999999999 5789999999752 333333 24568999999
Q ss_pred HHHHHHhcCcCccCCcC
Q 009146 266 VLKTAKEKHVQRLVHIS 282 (542)
Q Consensus 266 LlDcik~g~llp~~~ys 282 (542)
+.||+++|+++++.+|.
T Consensus 86 v~dci~~~~llde~~y~ 102 (106)
T 2jw5_A 86 LSLCLQERRLVDVAGFS 102 (106)
T ss_dssp HHHHHHTCSCCCGGGTB
T ss_pred HHHHHhcCcccCccccc
Confidence 99999999999998884
No 44
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=98.97 E-value=3.9e-10 Score=98.33 Aligned_cols=92 Identities=22% Similarity=0.309 Sum_probs=72.1
Q ss_pred CCCCCCCCcEEEEe--CCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhc----CCCCCcEEEech
Q 009146 53 PANAPFSGLVICVT--GLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH----GSRNGLYIVTLG 126 (542)
Q Consensus 53 ~~~~iF~GlvIcvt--G~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~----g~~~gI~IV~p~ 126 (542)
.+..+|+|++|.+- +.....++-..+.+..+||++...++..+||+|+.+..+ ++..+++ ....+++||+++
T Consensus 7 ~~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s--~~~~l~~l~~~~l~~~~~iV~~~ 84 (106)
T 2jw5_A 7 EAEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMD--YERALRLLRLPQLPPGAQLVKSA 84 (106)
T ss_dssp CGGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSC--HHHHHHHTTCSSCCSSCEEEEHH
T ss_pred cCcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCC--HHHHHHHHhhcccCCCcEEecCc
Confidence 46789999999984 443445666677899999999999999999999985433 3443333 223578999999
Q ss_pred HHHHHHHcccCCCCCccccc
Q 009146 127 WFVDSVRRNVRLSESLYTVK 146 (542)
Q Consensus 127 WI~Dci~~g~~Lde~~Y~l~ 146 (542)
|+.||++.+.++|++.|.+.
T Consensus 85 Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 85 WLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHHTCSCCCGGGTBCS
T ss_pred hHHHHHhcCcccCccccccc
Confidence 99999999999999999764
No 45
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=98.94 E-value=1.8e-09 Score=95.20 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=66.2
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecC---CCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSF---GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~---~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
..+|.|++|+|||-....|.+++++|+.+||++...+++.|+|||+... .+.|+++|.+. ||+||+.+|+.++
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~l----gI~IvsE~~l~~~ 83 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEA----NIRVVSEDFLQDV 83 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHT----TCCEECTHHHHHH
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHC----CCcEEeHHHHHHH
Confidence 5679999999999666699999999999999999999999999999943 68999999995 8999999995554
Q ss_pred HH
Q 009146 132 VR 133 (542)
Q Consensus 132 i~ 133 (542)
..
T Consensus 84 ~~ 85 (113)
T 2cok_A 84 SA 85 (113)
T ss_dssp HS
T ss_pred Hh
Confidence 43
No 46
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.91 E-value=7.2e-10 Score=110.49 Aligned_cols=95 Identities=12% Similarity=0.101 Sum_probs=53.4
Q ss_pred CCCCCCCCcEEEEeCCC-hhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC--HHHHHHHh----cCC-----CCCc
Q 009146 53 PANAPFSGLVICVTGLS-KEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--RKFEHALK----HGS-----RNGL 120 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~-~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g--~Ky~~A~k----~g~-----~~gI 120 (542)
.+..+|+|++|+++++. ...++.++.+|..+||++..+++..+||+|+..... .+...+++ .+. ..++
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKI 235 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccCCC
Confidence 55779999999999975 345567788999999999999998888888754321 22222222 110 0244
Q ss_pred -EEEechHHHHHHHcccCCCCCcccccc
Q 009146 121 -YIVTLGWFVDSVRRNVRLSESLYTVKS 147 (542)
Q Consensus 121 -~IV~p~WI~Dci~~g~~Lde~~Y~l~~ 147 (542)
+||+++||.||++.|+++||..|.+.+
T Consensus 236 ~~iV~~~Wv~dci~~~~ll~e~~Y~~~~ 263 (264)
T 1z56_C 236 ARVVAPEWVDHSINENCQVPEEDFPVVN 263 (264)
T ss_dssp CEEECTHHHHHHHTTSCCCSSCCC----
T ss_pred CEEecHHHHHHHHHcCCcCCHHHcCCCC
Confidence 999999999999999999999998753
No 47
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=98.87 E-value=3e-09 Score=89.66 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=62.8
Q ss_pred CCCCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCC-CceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 53 PANAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHP-QCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~-~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
..+.+|.|++|.+.+=.++ ...|+..|.++||.+...++. ++||+|+... + ..+.++|+|+||+||
T Consensus 12 ~LpdiFsg~~~~l~~~v~~-~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~---------~---~~~~~~V~p~WI~dc 78 (88)
T 3pc7_A 12 VLLDIFTGVRLYLPPSTPD-FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD---------K---NPAAQQVSPEWIWAC 78 (88)
T ss_dssp CCCCCSTTCEECCCTTSTT-HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT---------T---CTTSEEECHHHHHHH
T ss_pred cCChhhcCeEEEccCCcCc-hhhheeeeeecCCEEecccCCCcCeEEecCCC---------c---CCCCcEEchHHHHHH
Confidence 4678999999999653333 378999999999999888885 9999997653 2 268999999999999
Q ss_pred HHcccCCCC
Q 009146 132 VRRNVRLSE 140 (542)
Q Consensus 132 i~~g~~Lde 140 (542)
++++++|+.
T Consensus 79 I~k~~Ll~~ 87 (88)
T 3pc7_A 79 IRKRRLVAP 87 (88)
T ss_dssp HHHTSCCSC
T ss_pred HhCCcccCC
Confidence 999999975
No 48
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.86 E-value=5.1e-09 Score=100.82 Aligned_cols=80 Identities=18% Similarity=0.089 Sum_probs=70.3
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC---chHhHHh---cCCCceecHHHHHHHHHhcCc
Q 009146 202 GCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---DSVQKYM---GHSNNLVTPVWVLKTAKEKHV 275 (542)
Q Consensus 202 G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~---~s~kk~l---~~~~~IVs~~WLlDcik~g~l 275 (542)
|+.|++ +|++..+++.|.++++.+||.+++. .+.++||||+.. ....||+ ..++.||++.||.+|+++|++
T Consensus 2 ~~vi~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~ 78 (210)
T 2nte_A 2 PLVLIG-SGLSSEQQKMLSELAVILKAKKYTE--FDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVC 78 (210)
T ss_dssp CCEEEE-SSCCHHHHHHHHHHHHHTTCEEESS--CCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CEEEEE-CCCCHHHHHHHHHHHHHcCCEEeCC--CCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCCc
Confidence 578888 9999999999999999999999998 588999999976 3345554 588999999999999999999
Q ss_pred CccCCcChH
Q 009146 276 QRLVHISAD 284 (542)
Q Consensus 276 lp~~~ys~d 284 (542)
+++.+|...
T Consensus 79 ~~e~~y~~~ 87 (210)
T 2nte_A 79 EQEEKYEIP 87 (210)
T ss_dssp CCGGGTBCT
T ss_pred CChhhccCC
Confidence 999998653
No 49
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.86 E-value=1.7e-09 Score=104.17 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCCCCCCc-EEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 54 ANAPFSGL-VICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 54 ~~~iF~Gl-vIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
..++|+|+ ++|++++....++.|+.+|+.+||++..++. .++++|+.... +.. .+++||+|+||+||+
T Consensus 116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~~------~~~----~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPR-QASIVIGPYSG------KKK----ATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESCCCS------CCC----TTCEEECHHHHHHHH
T ss_pred cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeCCch------hcc----CCCcEEChhHHHHHH
Confidence 46999999 6889998888899999999999999999985 56777754322 223 489999999999999
Q ss_pred HcccCCCCCccccc
Q 009146 133 RRNVRLSESLYTVK 146 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~ 146 (542)
.++..+|..+|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999764
No 50
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.84 E-value=5.4e-09 Score=101.59 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc------hHhHHh---cCCCceecHHHHHH
Q 009146 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLK 268 (542)
Q Consensus 198 ~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~------s~kk~l---~~~~~IVs~~WLlD 268 (542)
..+.++.|++ +|+++.++..|.++++.+||.+++. .+..+||||+... ...||+ ..++.||++.||.+
T Consensus 3 ~~~~~~~i~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~~ 79 (229)
T 1l0b_A 3 RAERDISMVV-SGLTPKEVMIVQKFAEKYRLALTDV--ITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVIK 79 (229)
T ss_dssp CCCCCCEEEE-ESCCHHHHHHHHHHHHHTTCEECSS--CCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHHH
T ss_pred CCCCCeEEEE-cCCCHHHHHHHHHHHHHcCCEEeCC--cCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHHH
Confidence 3578899999 9999999999999999999999998 5889999999874 345554 58999999999999
Q ss_pred HHHhcCcCccCCcCh
Q 009146 269 TAKEKHVQRLVHISA 283 (542)
Q Consensus 269 cik~g~llp~~~ys~ 283 (542)
|+++|+++++.+|..
T Consensus 80 ~~~~~~~~~e~~y~~ 94 (229)
T 1l0b_A 80 SIQERKLLSVHEFEV 94 (229)
T ss_dssp HHTTTSCCCSGGGBC
T ss_pred HHHCCCcCChHHeEe
Confidence 999999999988854
No 51
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.81 E-value=6.1e-09 Score=99.79 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc------hHhHHh---cCCCceecHHHHHHHHH
Q 009146 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED------SVQKYM---GHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 201 ~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~------s~kk~l---~~~~~IVs~~WLlDcik 271 (542)
+|+.|++ +|+++.+++.+.++++.+||.+++. .+.++||||+... ...||+ ..++.||++.||.||++
T Consensus 3 ~~~~~~~-sg~~~~~~~~l~~~~~~~G~~~~~~--~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~ 79 (214)
T 1t15_A 3 KRMSMVV-SGLTPEEFMLVYKFARKHHITLTNL--ITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK 79 (214)
T ss_dssp -CCEEEE-ESCCHHHHHHHHHHHHHHTCEECSS--CCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred CcEEEEE-CCCCHHHHHHHHHHHHHhCCEEeCc--cCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHH
Confidence 4678888 9999999999999999999999998 5889999999864 245554 58899999999999999
Q ss_pred hcCcCccCCcCh
Q 009146 272 EKHVQRLVHISA 283 (542)
Q Consensus 272 ~g~llp~~~ys~ 283 (542)
+|+++++.+|..
T Consensus 80 ~~~~~~e~~y~~ 91 (214)
T 1t15_A 80 ERKMLNEHDFEV 91 (214)
T ss_dssp TTSCCCGGGGBC
T ss_pred CCCcCChHHeEe
Confidence 999999988854
No 52
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=4.5e-08 Score=87.09 Aligned_cols=93 Identities=17% Similarity=0.307 Sum_probs=71.7
Q ss_pred CCCCCCCCcEEEEeC--CChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhc---CCCCCcEEEechH
Q 009146 53 PANAPFSGLVICVTG--LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKH---GSRNGLYIVTLGW 127 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG--~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~---g~~~gI~IV~p~W 127 (542)
.+..+|.|++|.+.. +...-++-+.+++..+||++...+++.+||+|+.+........-++- ....+.+||+..|
T Consensus 16 ~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~W 95 (120)
T 2coe_A 16 PQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSW 95 (120)
T ss_dssp SSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHH
T ss_pred CcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHH
Confidence 567899999999964 44467788899999999999999999999999974433223322220 1123579999999
Q ss_pred HHHHHHcccCCCCCcccc
Q 009146 128 FVDSVRRNVRLSESLYTV 145 (542)
Q Consensus 128 I~Dci~~g~~Lde~~Y~l 145 (542)
|.+|+++|+++||..|+.
T Consensus 96 l~esmk~g~lv~ee~~~~ 113 (120)
T 2coe_A 96 LIECIGAGKPVEMTGKHQ 113 (120)
T ss_dssp HHHHHHTTSCCCCSSSSB
T ss_pred HHHHHHcCCccCcccceE
Confidence 999999999999965543
No 53
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.77 E-value=9.9e-09 Score=100.26 Aligned_cols=83 Identities=7% Similarity=0.081 Sum_probs=72.1
Q ss_pred CCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc-hHhHHh---cCCCceecHHHHHHHHHhc
Q 009146 198 STLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 198 ~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~-s~kk~l---~~~~~IVs~~WLlDcik~g 273 (542)
..+.|++|++ +||++.+++.+.++|+.+||.+++. ..++||||+... ...||+ ..++.||+++||.+|+++|
T Consensus 12 ~~~~~~~i~~-SG~~~~~~~~l~~~i~~lGg~v~~~---~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~ 87 (219)
T 3sqd_A 12 TPELTPFVLF-TGFEPVQVQQYIKKLYILGGEVAES---AQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQ 87 (219)
T ss_dssp CGGGCCEEEE-CSCCHHHHHHHHHHHHHTTCEECSS---GGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEE-eCCChHHHHHHHHHHHHCCCEEeCC---CCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcC
Confidence 4578999999 9999999999999999999999988 378999999873 334554 6889999999999999999
Q ss_pred CcCccCCcChH
Q 009146 274 HVQRLVHISAD 284 (542)
Q Consensus 274 ~llp~~~ys~d 284 (542)
+++++.+|...
T Consensus 88 ~~l~e~~y~l~ 98 (219)
T 3sqd_A 88 KFIDEQNYILR 98 (219)
T ss_dssp SCCCSGGGBCC
T ss_pred CCCChHhccCC
Confidence 99999998643
No 54
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.74 E-value=2.2e-08 Score=98.89 Aligned_cols=84 Identities=8% Similarity=0.068 Sum_probs=71.0
Q ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc-hHhHHh---cCCCceecHHHHHHHHHhcC
Q 009146 199 TLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEKH 274 (542)
Q Consensus 199 lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~-s~kk~l---~~~~~IVs~~WLlDcik~g~ 274 (542)
.-++++|.+ +|+++++++.+.++|+.+||.++++...+.+|||||+... ...||+ ..++.||++.||.+|+++|+
T Consensus 6 ~~~~~~~~~-Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~~~g~ 84 (235)
T 3al2_A 6 LKKQYIFQL-SSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACRTAGH 84 (235)
T ss_dssp --CCCEEEE-ESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHHHHTS
T ss_pred CCCCEEEEE-cCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHHHcCC
Confidence 346789999 8999999999999999999999863114789999999984 456665 69999999999999999999
Q ss_pred cCccCCcCh
Q 009146 275 VQRLVHISA 283 (542)
Q Consensus 275 llp~~~ys~ 283 (542)
++++.+|..
T Consensus 85 ~l~E~~ye~ 93 (235)
T 3al2_A 85 FVQEEDYEW 93 (235)
T ss_dssp CCCSGGGBT
T ss_pred CCChhceee
Confidence 999999854
No 55
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=98.72 E-value=1.1e-08 Score=107.43 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEeCCCCH----HHHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHH---hcC-CCceecHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSE----ELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGH-SNNLVTPVWVLK 268 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~----~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~---l~~-~~~IVs~~WLlD 268 (542)
..+|.||+|+| +|+.+ ..+..+.+++..+||+++.+ .+.++||||+......|+ ... +++||++.||++
T Consensus 280 ~~~L~G~~ivf-SG~~~~~~~~~~~~l~~l~~~lGa~v~~~--vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~~~Wl~~ 356 (372)
T 3ef0_A 280 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 356 (372)
T ss_dssp TTTSTTCEEEE-ESSSCTTSCTTTSHHHHHHHHTTCEEESS--SSSCCSEEEECSCCCHHHHHHHHSSSCCEEEHHHHHH
T ss_pred hhhcCCcEEEE-ecccCCCcchhHHHHHHHHHHcCCEEeCc--CCCCceEEEEcCCCchHHHHHHhcCCCEEEcHHHHHH
Confidence 57899999999 77642 34578999999999999999 588999999988544443 345 799999999999
Q ss_pred HHHhcCcCccCCcC
Q 009146 269 TAKEKHVQRLVHIS 282 (542)
Q Consensus 269 cik~g~llp~~~ys 282 (542)
|++.++.+++..|.
T Consensus 357 c~~~~~~vdE~~Y~ 370 (372)
T 3ef0_A 357 SLSQWKRLPESDYL 370 (372)
T ss_dssp HHHTTSCCCGGGGB
T ss_pred HHHhCCcCChhhce
Confidence 99999999998885
No 56
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.66 E-value=2.4e-08 Score=98.85 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCCCcEEEEeCC--CCHHHHHHHHHHHHhCCCEEEcc-----ccCCC-------------------CceEEEecCc-hH
Q 009146 198 STLSGCSMYVDSD--VSEELRNKVFEAATNEGATLVNQ-----WFVGC-------------------GASYVVCEED-SV 250 (542)
Q Consensus 198 ~lF~G~~Iyld~g--fs~~~r~~L~~lI~~~GG~vvds-----~~l~~-------------------~vTHVVv~~~-s~ 250 (542)
.+|+||.|+|... +++..+..|.++|+.+||++.++ +.... +.||||.+.. ..
T Consensus 1 ~lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~rt 80 (241)
T 2vxb_A 1 LIFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSRK 80 (241)
T ss_dssp CTTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCCC
T ss_pred CCCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCCc
Confidence 4899999999433 36678899999999999999886 11111 3499998863 24
Q ss_pred hHHh---cCCCceecHHHHHHHHHhcCcCccCCcCh
Q 009146 251 QKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHISA 283 (542)
Q Consensus 251 kk~l---~~~~~IVs~~WLlDcik~g~llp~~~ys~ 283 (542)
.||+ +.+++||++.||.||+++++++|+.+|-.
T Consensus 81 ~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL 116 (241)
T 2vxb_A 81 VKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLL 116 (241)
T ss_dssp HHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBB
T ss_pred HHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccC
Confidence 4554 68999999999999999999999987743
No 57
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.65 E-value=3.5e-08 Score=98.67 Aligned_cols=86 Identities=9% Similarity=0.193 Sum_probs=68.2
Q ss_pred CCCCCCcEEEEeCCCCHH-----------------------------HHHHHHHHHHhCCCEEEccccCCC-----CceE
Q 009146 197 NSTLSGCSMYVDSDVSEE-----------------------------LRNKVFEAATNEGATLVNQWFVGC-----GASY 242 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~-----------------------------~r~~L~~lI~~~GG~vvds~~l~~-----~vTH 242 (542)
..+|.|+.|+| ++.+.. .+..|+++|+.+||.|++++ ..+ ..||
T Consensus 13 ~~iF~g~~F~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~-~~~~~~~~~~t~ 90 (259)
T 1kzy_C 13 KTLFLGYAFLL-TMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDF-NEAQCNTAYQCL 90 (259)
T ss_dssp TTTTTTEEEEE-CCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSC-CTTTTTTTCEEE
T ss_pred CcCcCCcEEEE-EcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCc-cccccccCCCeE
Confidence 67999999999 666443 45789999999999999884 211 2689
Q ss_pred EEecC-chHhHHh---cCCCceecHHHHHHHHHhcCcCccCCcChH
Q 009146 243 VVCEE-DSVQKYM---GHSNNLVTPVWVLKTAKEKHVQRLVHISAD 284 (542)
Q Consensus 243 VVv~~-~s~kk~l---~~~~~IVs~~WLlDcik~g~llp~~~ys~d 284 (542)
+|+.. ....||+ +.++.||++.||.||+++|+++++.+|-.+
T Consensus 91 LIa~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 91 LIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EEESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EEcCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 99877 3344554 589999999999999999999999988653
No 58
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.62 E-value=3.8e-08 Score=88.52 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=69.2
Q ss_pred CCCCCCcEEEEeCC--CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHh----------cCCCcee
Q 009146 197 NSTLSGCSMYVDSD--VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYM----------GHSNNLV 261 (542)
Q Consensus 197 ~~lF~G~~Iyld~g--fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l----------~~~~~IV 261 (542)
...|.|++||| .. +....++.|.++++..|+++.+. ..+++||||+++. ++.+|+ ..++++|
T Consensus 8 ~~~F~~v~iyi-ve~kmG~sRr~fL~~la~~kGf~v~~~--~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lL 84 (133)
T 2dun_A 8 STRFPGVAIYL-VEPRMGRSRRAFLTGLARSKGFRVLDA--CSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALL 84 (133)
T ss_dssp SCSEEEEEEEE-CHHHHCSHHHHHHHHHHHHHTEEECSS--CCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEE
T ss_pred ccccCccEEEE-ecCCcCHHHHHHHHHHHHhcCCEeccc--cCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEe
Confidence 57899999999 43 45568899999999999999999 6999999999774 455555 1557999
Q ss_pred cHHHHHHHHHhcCcCccCCc
Q 009146 262 TPVWVLKTAKEKHVQRLVHI 281 (542)
Q Consensus 262 s~~WLlDcik~g~llp~~~y 281 (542)
+..|+.+|+++|+++++..+
T Consensus 85 disWltecm~~g~pV~~e~~ 104 (133)
T 2dun_A 85 DISWLTESLGAGQPVPVECR 104 (133)
T ss_dssp EHHHHHHHHHHTSCCCCCTT
T ss_pred ccHHHHHHHhcCCcCCcccc
Confidence 99999999999999998654
No 59
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=98.60 E-value=3.1e-08 Score=105.94 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=69.7
Q ss_pred CCCCCCcEEEEeCCCCHH----HHHHHHHHHHhCCCEEEccccCCCCceEEEecCchHhHH---hcC-CCceecHHHHHH
Q 009146 197 NSTLSGCSMYVDSDVSEE----LRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDSVQKY---MGH-SNNLVTPVWVLK 268 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~----~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s~kk~---l~~-~~~IVs~~WLlD 268 (542)
..+|.||+|+| +|+-+. .+..+.+++..+||++..+ ++.++||||+......|+ ... +++||++.||++
T Consensus 350 ~~~L~G~~Ivf-SG~~p~~~~~~r~~l~~~~~~lGa~~~~~--vs~~vTHLVa~~~~t~K~~~A~~~g~IkIVs~~WL~d 426 (442)
T 3ef1_A 350 QKVLKGCRLLF-SGVIPLGVDVLSSDIAKWAMSFGAEVVLD--FSVPPTHLIAAKIRTEKVKKAVSMGNIKVVKLNWLTE 426 (442)
T ss_dssp HTTSTTCEEEE-ESSSCTTSCSTTSHHHHHHHTTTCEECSS--SSSCCSEEEECSCCCHHHHHHHHHSSSEEEEHHHHHH
T ss_pred hcccCCcEEEE-ecccCCCCCccHHHHHHHHHHcCCEEeCC--CCCCceEEEeCCCCCHHHHHHHhcCCCEEEeHHHHHH
Confidence 46899999999 775432 4578999999999999999 689999999988544444 344 699999999999
Q ss_pred HHHhcCcCccCCcC
Q 009146 269 TAKEKHVQRLVHIS 282 (542)
Q Consensus 269 cik~g~llp~~~ys 282 (542)
|++.++.+++.+|.
T Consensus 427 cl~~~krldE~~Yl 440 (442)
T 3ef1_A 427 SLSQWKRLPESDYL 440 (442)
T ss_dssp HHHHTSCCCGGGTB
T ss_pred HHHcCCcCChhccc
Confidence 99999999998885
No 60
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.52 E-value=1.9e-07 Score=90.17 Aligned_cols=89 Identities=17% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCC--ceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHH
Q 009146 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQ--CTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDS 131 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~--~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dc 131 (542)
.++|+|+.|++++.....++.|..+|+.+||++...+.+. .+|+|.... ...++..+.++ +++||+++||.+|
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~----~i~vvs~eWi~~s 188 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRV----GLPLLSPEFLLTG 188 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHH----TCCEECTHHHHHH
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHC----CCeEEcHHHHHHH
Confidence 3799999999999877788999999999999999988753 256666433 34567777776 7999999999999
Q ss_pred HHcccCCCCCccccccc
Q 009146 132 VRRNVRLSESLYTVKSI 148 (542)
Q Consensus 132 i~~g~~Lde~~Y~l~~~ 148 (542)
+...+ +|++.|.+..+
T Consensus 189 I~~q~-ld~e~y~l~~~ 204 (209)
T 2etx_A 189 VLKQE-AKPEAFVLSPL 204 (209)
T ss_dssp HHHTC-CCGGGGBCCTT
T ss_pred HHhcc-cChHHheecCC
Confidence 99866 59999988643
No 61
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=98.45 E-value=2.7e-07 Score=83.05 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=72.0
Q ss_pred CCCCCCCCcEEEEeC--CChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcC---------CCCCcE
Q 009146 53 PANAPFSGLVICVTG--LSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHG---------SRNGLY 121 (542)
Q Consensus 53 ~~~~iF~GlvIcvtG--~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g---------~~~gI~ 121 (542)
.+...|.|++|.+.. +...-|+.|.+++..+|+++...+++.+||+|+.+... ..+++|. ...+..
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~---~~~~~~L~~~~~~l~~~~~~~~ 82 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSA---EEAVSWQERRMAAAPPGCTPPA 82 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCH---HHHHHHHHHHHHHSCTTCCCCE
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCH---HHHHHHHHHhhcccCcCCCCcE
Confidence 356889999999975 44568899999999999999999999999999955433 3344332 125689
Q ss_pred EEechHHHHHHHcccCCCCCcccc
Q 009146 122 IVTLGWFVDSVRRNVRLSESLYTV 145 (542)
Q Consensus 122 IV~p~WI~Dci~~g~~Lde~~Y~l 145 (542)
+|+..|+.+|++.|+++|+..++.
T Consensus 83 lLdisWltecm~~g~pV~~e~~~~ 106 (133)
T 2dun_A 83 LLDISWLTESLGAGQPVPVECRHR 106 (133)
T ss_dssp EEEHHHHHHHHHHTSCCCCCTTTS
T ss_pred EeccHHHHHHHhcCCcCCcccceE
Confidence 999999999999999999865543
No 62
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.27 E-value=2.5e-07 Score=90.44 Aligned_cols=76 Identities=7% Similarity=0.081 Sum_probs=64.3
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc-hHhHHh---cCCCceecHHHHHHHHHhcCcC
Q 009146 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED-SVQKYM---GHSNNLVTPVWVLKTAKEKHVQ 276 (542)
Q Consensus 201 ~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~-s~kk~l---~~~~~IVs~~WLlDcik~g~ll 276 (542)
.+.+|.+ +|+++.+ +.++|+.+||.++++ ..++||||++.. ...|++ ..++.||+++||.+|+++|.++
T Consensus 7 ~~~~v~f-SG~~~~~---~~~~i~~lGg~v~~~---~~~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~~l 79 (220)
T 3l41_A 7 KRVYITF-TGYDKKP---SIDNLKKLDMSITSN---PSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIV 79 (220)
T ss_dssp CCEEEEE-CSCSSCC---CCGGGGGGTEEECSC---TTTCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHHTSCC
T ss_pred ceEEEEE-eccCCCC---CcchHhhcceeeccC---chhhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhhhhcc
Confidence 5678898 8998764 389999999999998 357999999873 455554 6899999999999999999999
Q ss_pred ccCCcCh
Q 009146 277 RLVHISA 283 (542)
Q Consensus 277 p~~~ys~ 283 (542)
++.+|..
T Consensus 80 ~e~~y~l 86 (220)
T 3l41_A 80 DEEPYLL 86 (220)
T ss_dssp CSGGGBC
T ss_pred ccCcccc
Confidence 9999964
No 63
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=98.10 E-value=2.1e-05 Score=77.72 Aligned_cols=176 Identities=13% Similarity=0.201 Sum_probs=117.0
Q ss_pred CCcEEEEeCCChhhHHHH-HHHHHhcCCEEcccCC--CCceEEEEecC-CCHHHHHHHhcCCCCCcEEEechHHHHHHHc
Q 009146 59 SGLVICVTGLSKEARKQV-MEATERLGGQYSPDLH--PQCTHLVVQSF-GGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (542)
Q Consensus 59 ~GlvIcvtG~~~~er~~L-~~lI~~~GG~~s~~Ls--~~~THLVa~~~-~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~ 134 (542)
-.+.+++||+..++++.. .+....+|=.+.++.+ ..|+||||+.. .+.||..|+..+ +--.||+|+||.+|++.
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~--P~~~il~p~FI~~~Lk~ 98 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFE--PLKFALKPEFIIDLLKQ 98 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTST--TCCEEECTHHHHHHHHH
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccC--ccceEeCHHHHHHHHHH
Confidence 578899999982111111 2345578888999996 48999999986 689999999863 23469999999999988
Q ss_pred ---cc------CCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCc--
Q 009146 135 ---NV------RLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGC-- 203 (542)
Q Consensus 135 ---g~------~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~-- 203 (542)
++ .++.++|.+.+.... .+. ....++.+|.|+
T Consensus 99 ih~~~~~~~~~~l~~~dY~L~d~~~E-----~l~--------------------------------r~~~~gkLf~~~~I 141 (256)
T 3t7k_A 99 IHSKKDKLSQININLFDYEINGINES-----IIS--------------------------------KTKLPTKVFERANI 141 (256)
T ss_dssp HC-------CCCCCSSTTBCTTCCHH-----HHH--------------------------------HTTSSSCHHHHTTC
T ss_pred hhcCCcccccccCChhhccCCCcchh-----HHh--------------------------------hhccccccccCCcc
Confidence 77 677788877542110 000 011236899998
Q ss_pred -EEEEeCCCCHHHHHHHHHHHHhCCCEEEc---c--ccC-------------CCCceEEEecCc-----hHhHHh---c-
Q 009146 204 -SMYVDSDVSEELRNKVFEAATNEGATLVN---Q--WFV-------------GCGASYVVCEED-----SVQKYM---G- 255 (542)
Q Consensus 204 -~Iyld~gfs~~~r~~L~~lI~~~GG~vvd---s--~~l-------------~~~vTHVVv~~~-----s~kk~l---~- 255 (542)
+|++..++.+- .+.++.+++.|||.=+. . +.. +....+|++... .+++.+ .
T Consensus 142 ~ciNls~dI~GG-~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~~q~k~Fkk~~~~~~~ 220 (256)
T 3t7k_A 142 RCINLVNDIPGG-VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKASQVKKFTKLINDRDK 220 (256)
T ss_dssp CEEEEETTCTTC-HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCHHHHHHHHHHHHHHST
T ss_pred eeeeeccCCCCC-HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccHHHHHHHHHHhhcccc
Confidence 66666666653 47789999999995322 2 100 012457777652 234444 1
Q ss_pred -CCCceecHHHHHHHHHhcC
Q 009146 256 -HSNNLVTPVWVLKTAKEKH 274 (542)
Q Consensus 256 -~~~~IVs~~WLlDcik~g~ 274 (542)
.+.-+|.=.|..+||-...
T Consensus 221 n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 221 NETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp TSCEEEECHHHHHHHHHTTS
T ss_pred cceEEEEEcHHHHHHHhhee
Confidence 4568999999999998744
No 64
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=98.03 E-value=9.9e-06 Score=68.70 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=61.9
Q ss_pred CCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHHHh
Q 009146 197 NSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 197 ~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDcik~ 272 (542)
...|.|++|.| .| ++. .|+.+..+|+.+||.+..+ ...+++|||+.+. .+++....+++||+.+|+++++..
T Consensus 5 ~~~l~G~~~v~-TG~l~~-~R~e~~~~i~~~Gg~v~~s--Vskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 5 GEALKGLTFVI-TGELSR-PREEVKALLRRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCSSTTCEEEC-STTTTS-CHHHHHHHHHHTTCEEESC--CSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCcCCcEEEE-ecCCCC-CHHHHHHHHHHcCCEEeCc--ccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 56799999999 65 555 8999999999999999999 7889999999874 455556789999999999999864
No 65
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=97.90 E-value=1.5e-06 Score=97.19 Aligned_cols=77 Identities=26% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHHc
Q 009146 55 NAPFSGLVICVTGLSKEARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~ 134 (542)
..+|.|++||+||.....|.+++++|+.+||+++.+++++|+|||++...|.|+++|.+. ||+||+.+|+.+.+..
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~l----gI~Ii~E~~f~~~l~~ 660 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARAL----GVAVLTEEEFWRFLKE 660 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHC----CCeEEeHHHHHHHHhc
Confidence 457999999999966559999999999999999999999999999999999999999996 8999999999999875
Q ss_pred c
Q 009146 135 N 135 (542)
Q Consensus 135 g 135 (542)
+
T Consensus 661 ~ 661 (667)
T 1dgs_A 661 K 661 (667)
T ss_dssp -
T ss_pred C
Confidence 4
No 66
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=97.83 E-value=4.7e-05 Score=66.93 Aligned_cols=81 Identities=9% Similarity=0.090 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC------chHhHHhcCCCceecHHH-----
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE------DSVQKYMGHSNNLVTPVW----- 265 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~------~s~kk~l~~~~~IVs~~W----- 265 (542)
...|.|++|.|...++. .|+.+.++|+.+||++..+ ...+++|||+.+ ..+++....+++||+.+|
T Consensus 8 ~~~l~G~~~ViTG~l~~-~R~e~k~~ie~~Ggkv~~s--VskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~ 84 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR-NKDEVKAMIEKLGGKLTGT--ANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVS 84 (113)
T ss_dssp CCSSSSCEEEECSCCSS-CHHHHHHHHHHTTCEEESC--STTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred CCCcCCCEEEEEecCCC-CHHHHHHHHHHCCCEEcCc--cccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHH
Confidence 45799999999444665 7899999999999999999 788999999983 135555578999999999
Q ss_pred -----HHHHHHhcCcCccCC
Q 009146 266 -----VLKTAKEKHVQRLVH 280 (542)
Q Consensus 266 -----LlDcik~g~llp~~~ 280 (542)
+.+|++...++||..
T Consensus 85 ~~~~~~~~~i~k~~i~~w~~ 104 (113)
T 2cok_A 85 ASTKSLQELFLAHILSSWGA 104 (113)
T ss_dssp SCCSCHHHHHHHTBCSSCCC
T ss_pred hhchhHHHHHHHhcCCCCCC
Confidence 556666666666643
No 67
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=97.80 E-value=5.1e-05 Score=66.29 Aligned_cols=75 Identities=15% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCch----HhHHhcCCCceecHHHHHHHHHh
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEEDS----VQKYMGHSNNLVTPVWVLKTAKE 272 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~s----~kk~l~~~~~IVs~~WLlDcik~ 272 (542)
...|.|.+|.|...++.-.|+.+..+|+.+||.|..+ ...+++|||+++.. +++....+++||+.+|+++.+..
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~s--VSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~~ll~~ 107 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRN 107 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESS--CCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCc--ccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHHHHHHh
Confidence 4579999999943354446889999999999999999 78999999998843 34445689999999999999876
Q ss_pred c
Q 009146 273 K 273 (542)
Q Consensus 273 g 273 (542)
+
T Consensus 108 ~ 108 (109)
T 2k6g_A 108 L 108 (109)
T ss_dssp T
T ss_pred C
Confidence 4
No 68
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=97.80 E-value=2.9e-06 Score=95.00 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCCh-hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCCHHHHHHHhcCCCCCcEEEechHHHHHHH
Q 009146 55 NAPFSGLVICVTGLSK-EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGGRKFEHALKHGSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 55 ~~iF~GlvIcvtG~~~-~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~WI~Dci~ 133 (542)
..+|.|++||+||... -.|.+++++|+.+||+++.+++++|++||++...|.|+++|.+. ||+||+.+|+.+.+.
T Consensus 595 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~l----gI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQEL----GIEVIDEAEMLRLLG 670 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHC----CCcEEcHHHHHHHhc
Confidence 4579999999999765 48999999999999999999999999999999999999999996 899999999988763
No 69
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.65 E-value=9.5e-05 Score=64.90 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=61.6
Q ss_pred CCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc----hHhHHhcCCCceecHHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED----SVQKYMGHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 197 ~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~----s~kk~l~~~~~IVs~~WLlDcik 271 (542)
...|.|++|.| .| +..-.|+.+..+|+.+||.|..+ ...+++|||+.+. .+++....+++||+.+|+++.+.
T Consensus 20 ~~~l~G~~~v~-TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f~~ll~ 96 (112)
T 2ebu_A 20 ENCLEGLIFVI-TGVLESIERDEAKSLIERYGGKVTGN--VSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIR 96 (112)
T ss_dssp SSSSTTCEEEE-CSCCSSSCHHHHHHHHHHTTCEECSS--CCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred CCCcCCCEEEE-eeeCCCCCHHHHHHHHHHcCCEEecc--ccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHHHHHHh
Confidence 45799999999 55 54446899999999999999999 7899999999884 34455568999999999999997
Q ss_pred hc
Q 009146 272 EK 273 (542)
Q Consensus 272 ~g 273 (542)
.+
T Consensus 97 ~~ 98 (112)
T 2ebu_A 97 TM 98 (112)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 70
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00014 Score=61.91 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=65.2
Q ss_pred CCCCCCCcEEEEeCCCh-----hhHHHHHHHHHhcCCEEcccCCCCc--eEEEEecCCCHHHHHHHhcCCCCCcEEEech
Q 009146 54 ANAPFSGLVICVTGLSK-----EARKQVMEATERLGGQYSPDLHPQC--THLVVQSFGGRKFEHALKHGSRNGLYIVTLG 126 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~-----~er~~L~~lI~~~GG~~s~~Ls~~~--THLVa~~~~g~Ky~~A~k~g~~~gI~IV~p~ 126 (542)
...+|+|+.|.+.--+. .+.++|+.+|..+||.+...+.++. .+.|+..... -+++.|+|.
T Consensus 8 ~~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~------------t~LpTVtpT 75 (106)
T 2l42_A 8 SGPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNH------------TNLPTVTPT 75 (106)
T ss_dssp SSCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCC------------CSSSBCCTT
T ss_pred cCccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCC------------CCCccccHH
Confidence 45679999999974332 5789999999999999999988643 3444433322 268999999
Q ss_pred HHHHHHHcccCCCCCcccccc
Q 009146 127 WFVDSVRRNVRLSESLYTVKS 147 (542)
Q Consensus 127 WI~Dci~~g~~Lde~~Y~l~~ 147 (542)
+|.+|+.++.+|+...|.++.
T Consensus 76 YI~aC~~~nTLLnv~~YLvp~ 96 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVPY 96 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBCS
T ss_pred HHHHHHhcCceecccccccCc
Confidence 999999999999999999864
No 71
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00013 Score=62.03 Aligned_cols=81 Identities=12% Similarity=0.193 Sum_probs=60.0
Q ss_pred CCCCCCcEEEEeCC---C-CHHHHHHHHHHHHhCCCEEEccccCCCCc--eEEEecCchHhHHhcCCCceecHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSD---V-SEELRNKVFEAATNEGATLVNQWFVGCGA--SYVVCEEDSVQKYMGHSNNLVTPVWVLKTA 270 (542)
Q Consensus 197 ~~lF~G~~Iyld~g---f-s~~~r~~L~~lI~~~GG~vvds~~l~~~v--THVVv~~~s~kk~l~~~~~IVs~~WLlDci 270 (542)
...|+|+.|||..+ . +....+.|.++|+.+||+|...+ ..+. .+.||+. |-..+.+.|+|.+|.+|+
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~l--P~~s~~~~yVVSp-----yN~t~LpTVtpTYI~aC~ 81 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSK--PRESKENVFIVSP-----YNHTNLPTVTPTYIKACC 81 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEEC--CCCCSSCCCCBCT-----TCCCSSSBCCTTHHHHHH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhC--cccccCCeEEEeC-----CCCCCCccccHHHHHHHH
Confidence 56899999999543 1 22356889999999999999884 3332 2333332 223578899999999999
Q ss_pred HhcCcCccCCcChH
Q 009146 271 KEKHVQRLVHISAD 284 (542)
Q Consensus 271 k~g~llp~~~ys~d 284 (542)
.++.|+++.+|-++
T Consensus 82 ~~nTLLnv~~YLvp 95 (106)
T 2l42_A 82 QSNSLLNMENYLVP 95 (106)
T ss_dssp HSTTSCGGGGCCBC
T ss_pred hcCceecccccccC
Confidence 99999999988443
No 72
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.21 E-value=0.0021 Score=65.62 Aligned_cols=177 Identities=14% Similarity=0.062 Sum_probs=98.5
Q ss_pred CCCcEEEEeCCChhhHHHHHHHHHhcCCEEcccC-CCCceEEEEecCCC----HHHHHHHhcCCCCCcEEEechHHHHHH
Q 009146 58 FSGLVICVTGLSKEARKQVMEATERLGGQYSPDL-HPQCTHLVVQSFGG----RKFEHALKHGSRNGLYIVTLGWFVDSV 132 (542)
Q Consensus 58 F~GlvIcvtG~~~~er~~L~~lI~~~GG~~s~~L-s~~~THLVa~~~~g----~Ky~~A~k~g~~~gI~IV~p~WI~Dci 132 (542)
+.-+++|++ +.+.+..|.+.++.+||.+. ++ ...|||||.....+ .|...|+-. +++||+++||....
T Consensus 113 W~P~Vl~~S--ske~~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~----gkPIV~~~Fl~al~ 185 (325)
T 3huf_A 113 WRSMCIQFD--NPEMLSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLK----KTVIIDDSYLQYLS 185 (325)
T ss_dssp ECCCCEEES--CHHHHHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHT----TCEEECHHHHHHHT
T ss_pred EeeeEEEec--CHHHHHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHC----CCcEecHHHHHHHH
Confidence 455677774 22457779999999999999 66 56899999975444 458889873 89999999999875
Q ss_pred HcccCCCCCccccccccccCCchhhhhcccCCCCCCCCCCCccchhhhccccccccccccccCCCCCCCCcEEEEeCCCC
Q 009146 133 RRNVRLSESLYTVKSIDEHGMHLDKLNRLVGFAGTENSCLPAGIYEAKQFNATGKHERDSNRSMNSTLSGCSMYVDSDVS 212 (542)
Q Consensus 133 ~~g~~Lde~~Y~l~~~~e~~~p~d~~~~L~~~s~~e~s~lp~~I~esk~s~s~E~ld~~~~~~~~~lF~G~~Iyld~gfs 212 (542)
...+-.-+..=.++++.+. .+.+. ...|....| ... --.-|+|+++++ .+-+
T Consensus 186 ~~e~~~~~~~~~wPdp~df------lP~i~--~g~Ep~~~~----~~~---------------~~~~~~~~~~~~-~~~~ 237 (325)
T 3huf_A 186 TVKESVIEDASLMPDALEC------FKNII--KNNDQFPSS----PED---------------CINSLEGFSCAM-LNTS 237 (325)
T ss_dssp TCTTCCCCTTSSHHHHHHH------HHHHH--TTCTTCCSC----HHH---------------HTTTTTTCEEEE-ETCC
T ss_pred HhhhhhhhcccCCCChHHc------CCCCC--CCCCCCCCC----HHH---------------hhcccCceEEEE-EcCc
Confidence 4321110000000000000 00000 000000000 000 135688998888 3333
Q ss_pred HHHHHHHHHHHHhCCCEEEcccc-------CCCCceEEEecCc--hHhHH-hcCCCceecHHHHHHHHHhc
Q 009146 213 EELRNKVFEAATNEGATLVNQWF-------VGCGASYVVCEED--SVQKY-MGHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 213 ~~~r~~L~~lI~~~GG~vvds~~-------l~~~vTHVVv~~~--s~kk~-l~~~~~IVs~~WLlDcik~g 273 (542)
. .+..++...|=.+..-+. +-++..+||.... +..+. ...++-..+.+=+++-+-+.
T Consensus 238 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (325)
T 3huf_A 238 S----ESHHLLELLGLRISTFMSLGDIDKELISKTDFVVLNNAVYDSEKISFPEGIFCLTIEQLWKIIIER 304 (325)
T ss_dssp H----HHHHHHHHTTCEEEEEC------CCSSSSCSEEEEC-------------CCCEEEHHHHHHHHHSS
T ss_pred h----hhhHHHHHhcceeeeeeecccchHhhhccccEEEEcccccccccccCCcceEEEEHHHHHHHHhhc
Confidence 2 366788888988775431 3445567776653 11111 24577778887777777654
No 73
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.024 Score=53.00 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=66.4
Q ss_pred CCCCCCCcEEEEeCCCh---hhHHHHHHHHHhcCCEEcc-cCCCCceEEEEecCC----CHHHHHHHhcCCCCCcEEEec
Q 009146 54 ANAPFSGLVICVTGLSK---EARKQVMEATERLGGQYSP-DLHPQCTHLVVQSFG----GRKFEHALKHGSRNGLYIVTL 125 (542)
Q Consensus 54 ~~~iF~GlvIcvtG~~~---~er~~L~~lI~~~GG~~s~-~Ls~~~THLVa~~~~----g~Ky~~A~k~g~~~gI~IV~p 125 (542)
+-.-+.|+.+|+.-+.+ ..--+|.+.....|+.-.+ .+--++||.||.+.. .+....|.. ++|+||.|
T Consensus 158 kmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakh----nnipivrp 233 (290)
T 4gns_A 158 KMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKH----NNIPIVRP 233 (290)
T ss_dssp CTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHH----TTCCEECT
T ss_pred ccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhc----cCCCccCH
Confidence 44568899999987776 3445778888888988544 444599999998864 344455554 58999999
Q ss_pred hHHHHHHHcccCCCCCccccc
Q 009146 126 GWFVDSVRRNVRLSESLYTVK 146 (542)
Q Consensus 126 ~WI~Dci~~g~~Lde~~Y~l~ 146 (542)
+|+..|--..+.+....|.+.
T Consensus 234 ewvracevekrivgvrgfyld 254 (290)
T 4gns_A 234 EWVRACEVEKRIVGVRGFYLD 254 (290)
T ss_dssp HHHHHHHHTTSCCCSGGGBTT
T ss_pred HHHHHHhhhheeeeeeeEEEc
Confidence 999999888887776666554
No 74
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=93.23 E-value=0.016 Score=65.03 Aligned_cols=74 Identities=24% Similarity=0.287 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHHHhc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAKEK 273 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDcik~g 273 (542)
...|.|++|.|...++. .|+.+..+|+.+||++..+ .+.++++||+++. .++|....+++|++.+|+++.+..+
T Consensus 585 ~~~l~G~~~v~TG~l~~-~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~~~ 661 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR-PREEVKALLGRLGAKVTDS--VSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLKEK 661 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC-CHHHHHHHHHHcCCEEcCc--ccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHhcC
Confidence 45699999999333655 8999999999999999999 7889999999874 3445556799999999999998754
No 75
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=91.37 E-value=0.037 Score=62.11 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeCC-CCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---hHhHHhcCCCceecHHHHHHHHH
Q 009146 197 NSTLSGCSMYVDSD-VSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---SVQKYMGHSNNLVTPVWVLKTAK 271 (542)
Q Consensus 197 ~~lF~G~~Iyld~g-fs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s~kk~l~~~~~IVs~~WLlDcik 271 (542)
...|.|++|.| +| ++.-.|+.+..+|+.+||++..+ .+.++++||++.. .++|....+++|++.+|+++.+.
T Consensus 595 ~~~l~G~~~v~-TG~l~~~~R~e~~~~i~~~Ggkv~~s--VSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 595 DSPFAGKTVVL-TGSLSQMSRDDAKARLVELGAKVAGS--VSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCcccCcEEEE-cCCCCCCCHHHHHHHHHHcCCEEeCc--ccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 45699999999 55 55447899999999999999999 7889999999874 34455567899999999998763
No 76
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=90.56 E-value=0.62 Score=47.59 Aligned_cols=85 Identities=6% Similarity=-0.026 Sum_probs=56.5
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc---h----HhHHhcCCCceecHHHHHHHHHh-
Q 009146 201 SGCSMYVDSDVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED---S----VQKYMGHSNNLVTPVWVLKTAKE- 272 (542)
Q Consensus 201 ~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~---s----~kk~l~~~~~IVs~~WLlDcik~- 272 (542)
....+++ + +.+.+..|+..+...||.++ +| ....+||||+... . .-.++-.+.+||++.||....+.
T Consensus 114 ~P~Vl~~-S--ske~~~~L~~~L~~LGik~v-~~-~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~e 188 (325)
T 3huf_A 114 RSMCIQF-D--NPEMLSQWASNLNLLGIPTG-LR-DSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTVK 188 (325)
T ss_dssp CCCCEEE-S--CHHHHHHHHHHHHTTTCCEE-SS-CCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTCT
T ss_pred eeeEEEe-c--CHHHHHHHHHHHHHcCCEEE-Ec-cCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHhh
Confidence 3345555 3 34466779999999999999 75 5777999999752 2 22333479999999999987532
Q ss_pred -cCcCccCCcChHHHHHhhh
Q 009146 273 -KHVQRLVHISADLARQVGM 291 (542)
Q Consensus 273 -g~llp~~~ys~dl~r~~~~ 291 (542)
..++. ..-.++....+|-
T Consensus 189 ~~~~~~-~~~wPdp~dflP~ 207 (325)
T 3huf_A 189 ESVIED-ASLMPDALECFKN 207 (325)
T ss_dssp TCCCCT-TSSHHHHHHHHHH
T ss_pred hhhhhc-ccCCCChHHcCCC
Confidence 11121 2234566667764
No 77
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=90.14 E-value=0.3 Score=48.24 Aligned_cols=80 Identities=9% Similarity=0.119 Sum_probs=53.4
Q ss_pred CcEEEEeCCCC-HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC-chHhHHh---cCCCc--eecHHHHHHHHHh--
Q 009146 202 GCSMYVDSDVS-EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE-DSVQKYM---GHSNN--LVTPVWVLKTAKE-- 272 (542)
Q Consensus 202 G~~Iyld~gfs-~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~-~s~kk~l---~~~~~--IVs~~WLlDcik~-- 272 (542)
.++..+ +|+. ...-+.=.+.++..|=.+++.......|+||+.+. -...||+ +.++. ||+|.||.+|++.
T Consensus 22 ~i~ai~-TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~ih 100 (256)
T 3t7k_A 22 DLKAVC-TGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKFALKPEFIIDLLKQIH 100 (256)
T ss_dssp CEEEEE-SSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCEEECTHHHHHHHHHHC
T ss_pred eEEEEe-cCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccceEeCHHHHHHHHHHhh
Confidence 355555 6655 21112223566778999998731125799999998 3566665 56664 9999999999998
Q ss_pred -cC------cCccCCcC
Q 009146 273 -KH------VQRLVHIS 282 (542)
Q Consensus 273 -g~------llp~~~ys 282 (542)
|+ +++..+|.
T Consensus 101 ~~~~~~~~~~l~~~dY~ 117 (256)
T 3t7k_A 101 SKKDKLSQININLFDYE 117 (256)
T ss_dssp -------CCCCCSSTTB
T ss_pred cCCcccccccCChhhcc
Confidence 77 77777776
No 78
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.68 E-value=0.63 Score=43.53 Aligned_cols=87 Identities=17% Similarity=0.344 Sum_probs=61.0
Q ss_pred CCCCCCcEEEEeC-----CCCHHHHHHHHHHHHhCCCEEEccccCCCCceEEEecC---c----hHhHHhcCCCceecHH
Q 009146 197 NSTLSGCSMYVDS-----DVSEELRNKVFEAATNEGATLVNQWFVGCGASYVVCEE---D----SVQKYMGHSNNLVTPV 264 (542)
Q Consensus 197 ~~lF~G~~Iyld~-----gfs~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~---~----s~kk~l~~~~~IVs~~ 264 (542)
..-+.|.++++.+ .+++ -++.+-+.--|+.-... +..-+.||.||.+ + ++.+....+++||.|+
T Consensus 159 mtdmsgitvclgpldplkeisd---lqisqclshigarplqr-hvaidtthfvcndldneesneelirakhnnipivrpe 234 (290)
T 4gns_A 159 MTDMSGITVCLGPLDPLKEISD---LQISQCLSHIGARPLQR-HVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPE 234 (290)
T ss_dssp TTCCTTCCEEECCCCGGGTCCH---HHHHHHHHHTTCCCCBS-SCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTH
T ss_pred cccccCceEEecCCChhhhhhh---ccHHHHHHHhCCchhhh-eeeeecceeeecCCCcccchHHHHhhhccCCCccCHH
Confidence 3446899999932 2343 34566677778875443 2455679999987 1 2233335889999999
Q ss_pred HHHHHHHhcCcCccCCcChHHHH
Q 009146 265 WVLKTAKEKHVQRLVHISADLAR 287 (542)
Q Consensus 265 WLlDcik~g~llp~~~ys~dl~r 287 (542)
|+-.|-.++..+-+..+..|..+
T Consensus 235 wvracevekrivgvrgfyldadq 257 (290)
T 4gns_A 235 WVRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp HHHHHHHTTSCCCSGGGBTTSCG
T ss_pred HHHHHhhhheeeeeeeEEEcccH
Confidence 99999999998888777776554
No 79
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=87.31 E-value=1.1 Score=41.17 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=53.8
Q ss_pred CCCC-CcEEEEeCCChh-----hH-------HHHHHHHHhcCCEEcccCCCCceEEEEecCCC--------HHHHHHHhc
Q 009146 56 APFS-GLVICVTGLSKE-----AR-------KQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKH 114 (542)
Q Consensus 56 ~iF~-GlvIcvtG~~~~-----er-------~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g--------~Ky~~A~k~ 114 (542)
++|. +.+|.+-+.+++ .+ ..+.+.+..+|+.+.+.++.++||||+..+.. +-+..|.+.
T Consensus 57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~ 136 (160)
T 3qbz_A 57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN 136 (160)
T ss_dssp HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHT
T ss_pred HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHc
Confidence 4787 899999876643 12 44557888999999999999999999998732 336677663
Q ss_pred CCCCCcEEEechHHHHHHH
Q 009146 115 GSRNGLYIVTLGWFVDSVR 133 (542)
Q Consensus 115 g~~~gI~IV~p~WI~Dci~ 133 (542)
+++|=+.+=+..-++
T Consensus 137 ----~mKVW~yeK~~RFLk 151 (160)
T 3qbz_A 137 ----YMKVWSYEKAARFLK 151 (160)
T ss_dssp ----TCEEEEHHHHHHHHH
T ss_pred ----CceecchHHHHHHHH
Confidence 788866655544443
No 80
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=87.18 E-value=1.9 Score=39.30 Aligned_cols=76 Identities=11% Similarity=0.022 Sum_probs=53.8
Q ss_pred CCCC-CCcEEEEeC--CCh----------hhHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC--------HHHHHHHh
Q 009146 55 NAPF-SGLVICVTG--LSK----------EARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALK 113 (542)
Q Consensus 55 ~~iF-~GlvIcvtG--~~~----------~er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g--------~Ky~~A~k 113 (542)
-+|+ .+.+|.|-. ... ..++.|++.+..+||++.+-++..+||+|+..+.. +-...|.+
T Consensus 18 rkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~ 97 (151)
T 3oq0_A 18 GSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 97 (151)
T ss_dssp ---CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHH
T ss_pred HHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHH
Confidence 3566 677788753 221 13466788999999999999999999999987632 23456767
Q ss_pred cCCCCCcEEEechHHHHHHHc
Q 009146 114 HGSRNGLYIVTLGWFVDSVRR 134 (542)
Q Consensus 114 ~g~~~gI~IV~p~WI~Dci~~ 134 (542)
. +++|=+.+=+..-++.
T Consensus 98 ~----~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 98 N----YMKVWSYEKAARFLKN 114 (151)
T ss_dssp T----TCEEEEHHHHHHHHHT
T ss_pred c----CCeeecHHHHHHHHHh
Confidence 4 8999888777766654
No 81
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=85.10 E-value=1.7 Score=38.87 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCEEcccCCCCceEEEEecCCC--------HHHHHHHhcCCCCCcEEEechHHHHHHHc
Q 009146 72 ARKQVMEATERLGGQYSPDLHPQCTHLVVQSFGG--------RKFEHALKHGSRNGLYIVTLGWFVDSVRR 134 (542)
Q Consensus 72 er~~L~~lI~~~GG~~s~~Ls~~~THLVa~~~~g--------~Ky~~A~k~g~~~gI~IV~p~WI~Dci~~ 134 (542)
.++.|++.+..+||++.+-++..+||+|+..+.. +-...|.+. +++|=+.+=+..-++.
T Consensus 31 ~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~----~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN----YMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHT----TCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHc----CCeeeeHHHHHHHHHh
Confidence 5678899999999999999999999999987632 224667774 7999887777665554
No 82
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=75.35 E-value=11 Score=34.36 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=36.2
Q ss_pred CCC-CCcEEEEeCC-C---C-------HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc
Q 009146 198 STL-SGCSMYVDSD-V---S-------EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED 248 (542)
Q Consensus 198 ~lF-~G~~Iyld~g-f---s-------~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~ 248 (542)
.+. ..-+||||.. . + +..++.|++.+...||+|..- .+.+|||||...+
T Consensus 19 kIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~F--Fd~~VTiIITrR~ 79 (151)
T 3oq0_A 19 SHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRRS 79 (151)
T ss_dssp --CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESS--CCTTCCEEEESSC
T ss_pred HHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeee--cCCceEEEEeCCc
Confidence 456 6789999743 2 2 124466778899999999987 5899999999773
No 83
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=75.09 E-value=2.5 Score=38.85 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCC-CcEEEEeCCCC----HH-------HHHHHHHHHHhCCCEEEccccCCCCceEEEecCc
Q 009146 197 NSTLS-GCSMYVDSDVS----EE-------LRNKVFEAATNEGATLVNQWFVGCGASYVVCEED 248 (542)
Q Consensus 197 ~~lF~-G~~Iyld~gfs----~~-------~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~ 248 (542)
..+|. ++.||||+.-. .- .+..|++.+...||.+..- .+.+|||||+..+
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~F--Fd~~VTiVIT~R~ 117 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRRS 117 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESS--CCTTCCEEEESSC
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeee--ccCCeEEEEecCc
Confidence 35677 79999974321 11 2244667888999999987 5999999999773
No 84
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=74.08 E-value=4.3 Score=36.31 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=34.5
Q ss_pred cEEEEeCCC----C-------HHHHHHHHHHHHhCCCEEEccccCCCCceEEEecCc
Q 009146 203 CSMYVDSDV----S-------EELRNKVFEAATNEGATLVNQWFVGCGASYVVCEED 248 (542)
Q Consensus 203 ~~Iyld~gf----s-------~~~r~~L~~lI~~~GG~vvds~~l~~~vTHVVv~~~ 248 (542)
-+||||..- + +..++.|++.+...||+|..- .+.+|||||...+
T Consensus 8 s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~F--Fd~~VTiiITrR~ 62 (134)
T 3oq4_A 8 SRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQF--FDTTVTIVITRRS 62 (134)
T ss_dssp CEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESS--CCTTCCEEEESSC
T ss_pred ceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeee--cCCceEEEEeCCc
Confidence 589997532 2 235578889999999999987 5899999999773
No 85
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=69.47 E-value=2.3 Score=44.95 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHhhhhhhhhhhhccCCC
Q 009146 320 KISQEKRQQTVNLAKNGVRSRRSRRMQTCQ 349 (542)
Q Consensus 320 ~~~~~~R~~~~~~ak~~vr~~~~~~~q~~~ 349 (542)
+|++++|+||++.||+.+|+++..+++.-.
T Consensus 14 ~~~~~srlh~~~~w~~~~~~~~~~~~~~~~ 43 (434)
T 2aq4_A 14 SYFAHSRLHHLSAWKANLKDKFLNENIHKY 43 (434)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 578999999999999999999888776543
No 86
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=65.34 E-value=4.5 Score=35.45 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEeCCCCHHHHHHHHHHHHhCCCEEEcc
Q 009146 197 NSTLSGCSMYVDSDVSEELRNKVFEAATNEGATLVNQ 233 (542)
Q Consensus 197 ~~lF~G~~Iyld~gfs~~~r~~L~~lI~~~GG~vvds 233 (542)
..+|.|.+|.| ++..+.++|..+|..+||....-
T Consensus 11 ~~LF~GKtFvF---Ln~KQ~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 11 KSIFKDKVFLF---LNAKQYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp SCSSTTCEEEE---SCSSTHHHHHHHHHHTTCEEECC
T ss_pred HhhccCCEEEE---eCHHHHHHHHHHHHhcCceEEec
Confidence 57999999999 78889999999999999997754
No 87
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=42.00 E-value=18 Score=29.71 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||...+|...+|-.|+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~ 38 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKA 38 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHH
Confidence 36899999999999999999999999986665554
No 88
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.20 E-value=22 Score=29.30 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||.+.+|...+|-.|+
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~ 41 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQL 41 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999999999999999987766555
No 89
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=37.78 E-value=18 Score=29.79 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHh-ccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQ-ESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~-e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|. ++++-+||.+++|...+|-.|+
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~ 40 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHL 40 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHH
Confidence 4689999999999 9999999999999997776655
No 90
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=36.33 E-value=25 Score=28.55 Aligned_cols=35 Identities=11% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQE-SMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e-~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+|+++|.++|.+ +++-+||.+++|...+|-.|+
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~ 39 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIM 39 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHH
Confidence 36899999999998 999999999999997776655
No 91
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=33.20 E-value=19 Score=30.30 Aligned_cols=35 Identities=9% Similarity=0.014 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||.+.+|...+|-.|+
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~ 43 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKK 43 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHH
Confidence 47899999999999999999999999997765554
No 92
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=32.14 E-value=19 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||.+.+|...+|--|+
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~ 43 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERL 43 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999999999999999986665554
No 93
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=28.31 E-value=50 Score=30.37 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhc---cCCHHHHHHHhcCCCc
Q 009146 459 LQVLDYIYEFYQE---SMSAHEVESAIHTDSR 487 (542)
Q Consensus 459 ~~~~~~i~~~y~e---~~~~~e~~~a~~~~~~ 487 (542)
+|||++|.+|.++ ++|..||.++++-.+.
T Consensus 8 ~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~ 39 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPR 39 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcH
Confidence 4799999999886 6999999999987754
No 94
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=25.18 E-value=27 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHhcCCCcchHHH
Q 009146 458 CLQVLDYIYEFYQESMSAHEVESAIHTDSRHSDRL 492 (542)
Q Consensus 458 ~~~~~~~i~~~y~e~~~~~e~~~a~~~~~~~~~~~ 492 (542)
..+++++|.++|.++++-+||.+++|...+|-.|+
T Consensus 13 i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~ 47 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRM 47 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHH
Confidence 46899999999999999999999999986665554
No 95
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=22.95 E-value=17 Score=28.40 Aligned_cols=31 Identities=23% Similarity=0.462 Sum_probs=23.8
Q ss_pred cCCCCceeecCCCccHHHH-----HHHHHHHHhccC
Q 009146 443 MGPSSRTYFSDNGFTCLQV-----LDYIYEFYQESM 473 (542)
Q Consensus 443 ~~~~~~~~~~~~g~~~~~~-----~~~i~~~y~e~~ 473 (542)
|=|.=..+|...|||-.|+ ...||.||+.+-
T Consensus 23 lp~eW~~ll~~sGIs~~~~k~~et~~~I~~F~~~~g 58 (65)
T 2lnh_A 23 LDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTG 58 (65)
T ss_dssp CCTTHHHHHHHHTCCHHHHTCTTTHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHcCCCHHHHHCHHHHHHHHHHHHHcC
Confidence 3444566778889999887 678999999763
No 96
>2rr3_B OSBP, oxysterol-binding protein 1; lipid transport, transport, protein-peptide complex, major S protein domain, protein binding; NMR {Homo sapiens}
Probab=22.13 E-value=49 Score=23.85 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=7.5
Q ss_pred CCCCcccccCCC
Q 009146 389 EHHPSVFFDAEA 400 (542)
Q Consensus 389 e~~~~~~~~~~~ 400 (542)
|+.-.-||||+.
T Consensus 15 EDed~EfFDA~e 26 (47)
T 2rr3_B 15 EDDENEFFDAPE 26 (47)
T ss_dssp CCCSSCCBCCCS
T ss_pred cccccccccccc
Confidence 333456999954
No 97
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=21.52 E-value=1.1e+02 Score=25.30 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCccHHHHHHHHHHHHhccCCHHHHHHHhcCC----CcchHHHHHhhhhhcccccccceeee
Q 009146 454 NGFTCLQVLDYIYEFYQESMSAHEVESAIHTD----SRHSDRLRAVYASKETAECGYVTFRR 511 (542)
Q Consensus 454 ~g~~~~~~~~~i~~~y~e~~~~~e~~~a~~~~----~~~~~~~r~~~~~~~~~~~~~~~~~r 511 (542)
...+..+||..|+. +.++..|+..+++-+ +||-.+|.. .|++.+.|
T Consensus 30 ~~~~~~~il~~L~~---~~~s~~ela~~l~is~stvsr~l~~Le~---------~Glv~~~~ 79 (119)
T 2lkp_A 30 ATPSRLMILTQLRN---GPLPVTDLAEAIGMEQSAVSHQLRVLRN---------LGLVVGDR 79 (119)
T ss_dssp CCHHHHHHHHHHHH---CCCCHHHHHHHHSSCHHHHHHHHHHHHH---------HCSEEEEE
T ss_pred CCHHHHHHHHHHHH---CCCCHHHHHHHHCcCHHHHHHHHHHHHH---------CCCEEEEe
Confidence 44678888888875 689999999999776 455555533 46665554
Done!