BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009148
(542 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O74462|TAF6_SCHPO Transcription initiation factor TFIID subunit 6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf6 PE=1 SV=1
Length = 452
Score = 322 bits (825), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 248/388 (63%), Gaps = 24/388 (6%)
Query: 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66
E+++ +A+ +GI N + + A A+A D+EYRI +++QEA K M HS+RT LT+ D+ AL+
Sbjct: 9 ESIKDVAEMLGIGNLADEPAAAIAMDLEYRIHQVVQEATKFMVHSKRTVLTSADISSALR 68
Query: 67 LRNVEPVYGFASGGPLRFRRAI---GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCH 123
NVEP+YGF + PL F A G L+YLDD++V+F+ +I APLP+ P + S H
Sbjct: 69 TLNVEPLYGFNNSRPLEFHEAAVGAGQNSLYYLDDEEVDFEKIINAPLPKVPRNISYSAH 128
Query: 124 WLAIEGVQPVIPEN-APVQAIAA--PSNGTNN----------EQKDGLP----VEIKLPV 166
WLAIEGVQP IP+N P S GT+ E ++G+ VEIK V
Sbjct: 129 WLAIEGVQPAIPQNPTPSDHTVGEWASKGTSGVMPGASTAAKEARNGVTSMDNVEIKPLV 188
Query: 167 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL 226
+H+LS+ELQLYF++IT + ++ L AL SL D GLH L+PYF F++D V+R L
Sbjct: 189 RHVLSKELQLYFERITSALLDETNVELRDAALSSLRDDPGLHQLLPYFIMFLSDSVTRNL 248
Query: 227 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADN-HWELRDFT 285
N +L LM + W LL NP++ +EPY+ QLMPS++TCLVAKRLG+ ++ H+ LRD
Sbjct: 249 GNLVVLTTLMHMAWALLDNPNLFVEPYVQQLMPSILTCLVAKRLGSDPNNHEHYALRDLA 308
Query: 286 AKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLL 345
A L+ +C R+G+VY TL+ R+T+T L A LD + + HYGA++GL +G +R+L++
Sbjct: 309 AFLLGIVCDRFGNVYYTLKPRVTRTALKAFLDNTKPYSTHYGAIKGLKTMGKEAIRVLVV 368
Query: 346 PNLGPYLSLLEPEMLLEKQKNEVKRHEA 373
PN+ Y L+ + ++ NE + +EA
Sbjct: 369 PNIKVYEVLVRKTL---EKGNEEEIYEA 393
>sp|Q91857|TAF6_XENLA Transcription initiation factor TFIID subunit 6 OS=Xenopus laevis
GN=taf6 PE=2 SV=3
Length = 618
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 157/381 (41%), Positives = 234/381 (61%), Gaps = 35/381 (9%)
Query: 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDV 61
+++P E+++VI++S+GIS S + LA +V +RI+E+ Q+A+K M +R LT D+
Sbjct: 10 TLLPSESMKVISESVGISQMSEETCQLLAQEVSFRIKEVTQDALKFMHVGKRQKLTPSDI 69
Query: 62 DEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSI 120
D ALKL+NVEP+YGF L FR A G R+L + ++K+ + D+I PLPR PLD S+
Sbjct: 70 DAALKLKNVEPIYGFHPKEFLPFRYASGGGRELHFYEEKETDLSDIISTPLPRVPLDVSL 129
Query: 121 VCHWLAIEGVQPVIPENAP--------VQA-----IAAPSN-------------GTNNEQ 154
HWL+IEGVQP IPEN P +A +A P G E+
Sbjct: 130 KAHWLSIEGVQPAIPENPPPVPKEQQKTEATEPLKVAKPGQEEGLPGKGQGSGEGKGKEK 189
Query: 155 K----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPL 210
K +G P+++K H LS E QLY+ +ITE V ++ +AL S+ATD GL+ +
Sbjct: 190 KTAILEGAPLKLKPRSIHELSVEQQLYYKEITEACVGSCEAK-RAEALQSIATDPGLYQM 248
Query: 211 VPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAK 268
+P F+ F+++ V + NN +LL LMR+V L+ NP + +E YLH+L+P+V+TC+V++
Sbjct: 249 LPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAVMTCIVSR 308
Query: 269 RLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYG 327
+L R DNHW LRDF A+L+A ICK + N +Q+R+TKT +D + T YG
Sbjct: 309 QLCLRPDVDNHWALRDFAARLIAQICKNFSTTTNNIQSRITKTFTKTWVDDRTPWTTRYG 368
Query: 328 AVQGLAALGPNVVRLLLLPNL 348
++ GLA LGP+VV+ L++P L
Sbjct: 369 SIAGLAELGPDVVKTLIVPRL 389
>sp|Q63801|TAF6_RAT Transcription initiation factor TFIID subunit 6 OS=Rattus
norvegicus GN=Taf6 PE=2 SV=1
Length = 678
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 233/386 (60%), Gaps = 40/386 (10%)
Query: 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDV 61
+++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSI 120
D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+I PLPR PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 VCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGT 150
HWL+IEG QP IPEN P +A AA ++G
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGK 191
Query: 151 NNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDS 205
E+K +G P +K H LS E QLY+ +ITE V ++ +AL S+ATD
Sbjct: 192 GKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDP 250
Query: 206 GLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT 263
GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP + +E Y+H+L+P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 264 CLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRAL 322
C+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+TKT + +D K
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 323 TQHYGAVQGLAALGPNVVRLLLLPNL 348
T YG++ GLA LG +V++ L+LP L
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|Q62311|TAF6_MOUSE Transcription initiation factor TFIID subunit 6 OS=Mus musculus
GN=Taf6 PE=2 SV=1
Length = 678
Score = 286 bits (732), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/386 (40%), Positives = 233/386 (60%), Gaps = 40/386 (10%)
Query: 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDV 61
+++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSI 120
D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+I PLPR PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 VCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGT 150
HWL+IEG QP IPEN P +A AA ++G
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAAAADGK 191
Query: 151 NNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDS 205
E+K +G P +K H LS E QLY+ +ITE V ++ +AL S+ATD
Sbjct: 192 GKEKKAPPLLEGAPFRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDP 250
Query: 206 GLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT 263
GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP + +E Y+H+L+P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 264 CLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRAL 322
C+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+TKT + +D K
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 323 TQHYGAVQGLAALGPNVVRLLLLPNL 348
T YG++ GLA LG +V++ L+LP L
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|P49848|TAF6_HUMAN Transcription initiation factor TFIID subunit 6 OS=Homo sapiens
GN=TAF6 PE=1 SV=1
Length = 677
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 154/386 (39%), Positives = 233/386 (60%), Gaps = 40/386 (10%)
Query: 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDV 61
+++P E+++V+A+S+GI+ + L +V YRI+EI Q+A+K M +R LTT D+
Sbjct: 12 TVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLTTSDI 71
Query: 62 DEALKLRNVEPVYGFASGGPLRFRRAIGY-RDLFYLDDKDVEFKDVIEAPLPRAPLDTSI 120
D ALKL+NVEP+YGF + + FR A G R+L++ ++K+V+ D+I PLPR PLD +
Sbjct: 72 DYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDIINTPLPRVPLDVCL 131
Query: 121 VCHWLAIEGVQPVIPENAP--------VQAI----------------------AAPSNGT 150
HWL+IEG QP IPEN P +A A ++G
Sbjct: 132 KAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGATTADGK 191
Query: 151 NNEQK-----DGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDS 205
E+K +G P+ +K H LS E QLY+ +ITE V ++ +AL S+ATD
Sbjct: 192 GKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKR-AEALQSIATDP 250
Query: 206 GLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT 263
GL+ ++P F+ F+++ V + NN +LL LMR+V L+ NP + +E Y+H+L+P+V+T
Sbjct: 251 GLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIPAVMT 310
Query: 264 CLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRAL 322
C+V+++L R DNHW LRDF A+LVA ICK + N +Q+R+TKT + +D K
Sbjct: 311 CIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDEKTPW 370
Query: 323 TQHYGAVQGLAALGPNVVRLLLLPNL 348
T YG++ GLA LG +V++ L+LP L
Sbjct: 371 TTRYGSIAGLAELGHDVIKTLILPRL 396
>sp|P49847|TAF6_DROME Transcription initiation factor TFIID subunit 6 OS=Drosophila
melanogaster GN=Taf6 PE=1 SV=2
Length = 606
Score = 272 bits (695), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 149/386 (38%), Positives = 226/386 (58%), Gaps = 28/386 (7%)
Query: 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDV 61
S + E+++VIA+SIG+ + S DAA LA DV +++ I+Q+A K M H++R L+ D+
Sbjct: 19 SSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDI 78
Query: 62 DEALKLRNVEPVYGFASGGPLRFRRAI-GYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSI 120
D +LK+RNVEP YGF + + FR A G R+L + +DK+++ ++ + PLD ++
Sbjct: 79 DMSLKVRNVEPQYGFVAKDFIPFRFASGGGRELHFTEDKEIDLGEITSTNSVKIPLDLTL 138
Query: 121 VCHWLAIEGVQPVIPENAP-----------------------VQAIAAPSNGTNNEQKDG 157
HW +EGVQP +PEN P A P+ G ++ K+
Sbjct: 139 RSHWFVVEGVQPTVPENPPPLSKDSQLLDSVNPVIKMDQGLNKDAAGKPTTGKIHKLKNV 198
Query: 158 LPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYF 217
+ +K H LS E QLY+ +ITE V SD +AL SL +D GLH ++P F
Sbjct: 199 ETIHVKQLATHELSVEQQLYYKEITEACVG-SDEPRRGEALQSLGSDPGLHEMLPRMCTF 257
Query: 218 VADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNR-L 274
+A+ V + NN +LL LMR+V LL NP + +E YLH+L+PSV+TC+V+K+L R
Sbjct: 258 IAEGVKVNVVQNNLALLIYLMRMVRALLDNPSLFLEKYLHELIPSVMTCIVSKQLCMRPE 317
Query: 275 ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAA 334
DNHW LRDF ++L+A ICK + + N LQTR+T+ AL + K L+ YG++ GL+
Sbjct: 318 LDNHWALRDFASRLMAQICKNFNTLTNNLQTRVTRIFSKALQNDKTHLSSLYGSIAGLSE 377
Query: 335 LGPNVVRLLLLPNLGPYLSLLEPEML 360
LG V+++ ++P L +EP +L
Sbjct: 378 LGGEVIKVFIIPRLKFISERIEPHLL 403
>sp|P53040|TAF6_YEAST Transcription initiation factor TFIID subunit 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF6 PE=1
SV=1
Length = 516
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 231/397 (58%), Gaps = 57/397 (14%)
Query: 5 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEA 64
P++TV+ +A+S+G+ N + D ALA DVEYRI EI+++A+K RHS+R LTTDDV +A
Sbjct: 13 PQDTVKDVAESLGLENINDDVLKALAMDVEYRILEIIEQAVKFKRHSKRDVLTTDDVSKA 72
Query: 65 LKLRNVEPVYGFASGGPLR----FRR--AIGYRDLFYLDDKDVEFKDVIEAPLPRAPLDT 118
L++ NVEP+YG+ G + F + G + ++YLD+++V+F +I PLP+ P
Sbjct: 73 LRVLNVEPLYGYYDGSEVNKAVSFSKVNTSGGQSVYYLDEEEVDFDRLINEPLPQVPRLP 132
Query: 119 SIVCHWLAIEGVQPVIPEN----------------------------APVQAIAAPSNGT 150
+ HWLA+EGVQP I +N PV + A ++ T
Sbjct: 133 TFTTHWLAVEGVQPAIIQNPNLNDIRVSQPPFIRGAIVTALNDNSLQTPVTSTTASASVT 192
Query: 151 N-------NEQKDGLPVEIKLPVKHILSRELQLYFDKI--TELAVSRSDSV---LFKQAL 198
+ + K G E+K VKH+LS+ELQ+YF+K+ T A S++D + + AL
Sbjct: 193 DTGASQHLSNVKPGQNTEVKPLVKHVLSKELQIYFNKVISTLTAKSQADEAAQHMKQAAL 252
Query: 199 VSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLM 258
SL TDSGLH LVPYF F+A+++++ L++ LL ++ ++++LL N I ++PY+H LM
Sbjct: 253 TSLRTDSGLHQLVPYFIQFIAEQITQNLSDLQLLTTILEMIYSLLSNTSIFLDPYIHSLM 312
Query: 259 PSVVTCLVAKRLGNRLADNHWE-----------LRDFTAKLVAAICKRYGHVYNTLQTRL 307
PS++T L+AK+LG D+ + LRDF A L+ + K++ Y +L+ R+
Sbjct: 313 PSILTLLLAKKLGGSPKDDSPQEIHEFLERTNALRDFAASLLDYVLKKFPQAYKSLKPRV 372
Query: 308 TKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL 344
T+TLL LD R +YG ++G++ L +R L
Sbjct: 373 TRTLLKTFLDINRVFGTYYGCLKGVSVLEGESIRFFL 409
>sp|Q8R2K4|TAF6L_MOUSE TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Mus musculus GN=Taf6l PE=2
SV=1
Length = 616
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 120/383 (31%), Positives = 199/383 (51%), Gaps = 32/383 (8%)
Query: 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDE 63
+P+E+V ++A+S G+ S + A LA DV YR+RE Q + + M+H++R LT +D +
Sbjct: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
Query: 64 ALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVC 122
AL+ +VE V G+ S L R A DL++ +D++V ++ A +P+ +T++
Sbjct: 71 ALRWSSVEAVCGYGSQEALPLRPAR-EGDLYFPEDREVSLVELALATNIPKGCAETAVRV 129
Query: 123 HWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKIT 182
H ++G + P+ + A+++ L+ +L Y+ ++T
Sbjct: 130 HVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYQQVT 165
Query: 183 ELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL 242
AV D L K AL L T+S + L+PYF Y V+ V ++ L L++V +L
Sbjct: 166 R-AVLGDDPQLMKVALQDLQTNSKIAALLPYFVYVVSG-VKSVSHDLEQLHRLLQVARSL 223
Query: 243 LQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRLADNHWELRDFTAKLVAAICKRYGHVY 300
++NPH+ + PY+ L+ SV+ C++ N L D HW LRD A L++ I +G +
Sbjct: 224 IRNPHLCLGPYVRSLVGSVLYCVLEPLAASINPLND-HWTLRDGAALLLSHIFWTHGDLV 282
Query: 301 NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360
+ L ++ +L L DP R L HYGAV GL ALG V +L P+L Y + L+ +
Sbjct: 283 SGLYQQILLSLQKVLTDPVRPLCSHYGAVVGLHALGWKAVERVLYPHLPTYWTNLQAVLD 342
Query: 361 LEKQKNEVKRHEAWRVYGALLQA 383
N + + +VYGA+L A
Sbjct: 343 DYSVSNAQVKADGHKVYGAILVA 365
>sp|Q9Y6J9|TAF6L_HUMAN TAF6-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 6L OS=Homo sapiens GN=TAF6L PE=1
SV=1
Length = 622
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/383 (31%), Positives = 197/383 (51%), Gaps = 32/383 (8%)
Query: 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDE 63
+P+E+V ++A+S G+ S + A LA DV YR+RE Q + + M+H++R LT +D +
Sbjct: 12 IPRESVRLMAESTGL-ELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLTVEDFNR 70
Query: 64 ALKLRNVEPVYGFASGGPLRFRRAIGYRDLFYLDDKDVEFKDVIEAP-LPRAPLDTSIVC 122
AL+ +VE V G+ S L R A +L++ +D++V ++ A +P+ +T++
Sbjct: 71 ALRWSSVEAVCGYGSQEALPMRPAR-EGELYFPEDREVNLVELALATNIPKGCAETAVRV 129
Query: 123 HWLAIEGVQPVIPENAPVQAIAAPSNGTNNEQKDGLPVEIKLPVKHILSRELQLYFDKIT 182
H ++G + P+ + A+++ L+ +L Y+ ++T
Sbjct: 130 HVSYLDGKGNLAPQGSVPSAVSS------------------------LTDDLLKYYHQVT 165
Query: 183 ELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL 242
AV D L K AL L T+S + L+PYF Y V+ V ++ L L++V +L
Sbjct: 166 R-AVLGDDPQLMKVALQDLQTNSKIGALLPYFVYVVSG-VKSVSHDLEQLHRLLQVARSL 223
Query: 243 LQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRLADNHWELRDFTAKLVAAICKRYGHVY 300
+NPH+ + PY+ L+ SV+ C++ N L D HW LRD A L++ I +G +
Sbjct: 224 FRNPHLCLGPYVRCLVGSVLYCVLEPLAASINPLND-HWTLRDGAALLLSHIFWTHGDLV 282
Query: 301 NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360
+ L + +L L DP R L HYGAV GL ALG V +L P+L Y + L+ +
Sbjct: 283 SGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLD 342
Query: 361 LEKQKNEVKRHEAWRVYGALLQA 383
N + + +VYGA+L A
Sbjct: 343 DYSVSNAQVKADGHKVYGAILVA 365
>sp|P48781|HMFA_METFE DNA-binding protein HMf-1 OS=Methanothermus fervidus GN=hmfA PE=1
SV=1
Length = 69
Score = 38.9 bits (89), Expect = 0.095, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P + I ++ G S DA +ALA +E EI EA+K +H+ R T+ +D
Sbjct: 1 MGELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAED 60
Query: 61 VDEALKL 67
++ A K+
Sbjct: 61 IELARKM 67
>sp|O27731|HMT2_METTH DNA-binding protein HMt-1.2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA2 PE=3 SV=3
Length = 68
Score = 38.5 bits (88), Expect = 0.14, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V I ++ G S DA ALA +E + EI +EA+K +H+ R T+ D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAREALAKILEEKGEEIAKEAVKLAKHAGRKTVKASD 60
Query: 61 VDEALK 66
++ A K
Sbjct: 61 IELAAK 66
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 38.5 bits (88), Expect = 0.14, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDE 63
+P + I + G S DA + LA +E R+I EAIK RH+ R T+ +D++
Sbjct: 3 LPIAPIGRIIKDAGAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDIEL 62
Query: 64 ALK 66
A++
Sbjct: 63 AVR 65
>sp|Q57632|HJA1_METJA Probable archaeal histone 1 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0168 PE=3 SV=1
Length = 67
Score = 37.0 bits (84), Expect = 0.37, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P E I + G S AA LA VE EI +EA++ +H++R T+ +D
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 VDEALK 66
+ ALK
Sbjct: 61 IKLALK 66
>sp|Q58342|HJA2_METJA Probable archaeal histone 2 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJ0932 PE=3 SV=1
Length = 67
Score = 37.0 bits (84), Expect = 0.40, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P E I + G S AA LA VE EI +EA++ +H++R T+ +D
Sbjct: 1 MAELPVAPFERILKKAGAERVSRAAAEYLAEAVEEIALEIAKEAVELAKHAKRKTVKVED 60
Query: 61 VDEALK 66
+ ALK
Sbjct: 61 IKLALK 66
>sp|Q60264|HJA4_METJA Probable archaeal histone 4 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 /
NBRC 100440) GN=MJECL29 PE=3 SV=1
Length = 67
Score = 36.6 bits (83), Expect = 0.52, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P E I + +G S AA LA E EI +EA+ +H++R T+ +D
Sbjct: 1 MTELPVAPFERILKKVGAERVSRAAAEYLAEAFEEIALEIAKEAVDLAKHAKRKTVKVED 60
Query: 61 VDEALK 66
+ ALK
Sbjct: 61 IKLALK 66
>sp|P48783|HFO2_METFO Archaeal histone A2 OS=Methanobacterium formicicum GN=hfoA2 PE=1
SV=3
Length = 68
Score = 36.2 bits (82), Expect = 0.74, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V I ++ G S DA ALA +E E+ ++A++ +H+ R T+ +D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEENGEELAKKAVELAKHAGRKTVKAED 60
Query: 61 VDEALK 66
++ A+K
Sbjct: 61 IEMAVK 66
>sp|P39993|GEA2_YEAST ARF guanine-nucleotide exchange factor 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=GEA2 PE=1
SV=1
Length = 1459
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 16/112 (14%)
Query: 316 LDPKRALTQHYGAVQGLA--ALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEA 373
LD + T+ +Q A G VVR L NL LSL+ PE NE+K +
Sbjct: 306 LDIVQKTTRSNSRIQAYADDNYGLPVVRQYL--NL--LLSLIAPE-------NELKHSYS 354
Query: 374 WRVYG-ALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNGIVATLSNKRKTSM 424
R++G L+Q A + DRL+++P L +L + ++K+ I+ + N K S+
Sbjct: 355 TRIFGLELIQTALEISGDRLQLYPRLFTLISDPIFKS--ILFIIQNTTKLSL 404
>sp|Q6FE36|SYM_ACIAD Methionine--tRNA ligase OS=Acinetobacter sp. (strain ADP1) GN=metG
PE=3 SV=1
Length = 685
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 26/172 (15%)
Query: 248 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL----------VAAICKRY- 296
I+ E YL L P + A +L +++ D+ L DF K+ +A+ C ++
Sbjct: 339 IKAETYLQHLNPEYLRYYFASKLSDKVEDSDLNLDDFVQKVNSDLVGKVVNIASRCAKFI 398
Query: 297 -GHVYNTLQTRLTK-TLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSL 354
NTL + L+ + +D ++ Q Y A + AA+ + L Y+
Sbjct: 399 NSSFNNTLSANCAEPELVQSFIDAGDSIAQAYEAREFSAAIRE---IMALADKANQYIDE 455
Query: 355 LEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIF--PPLSSLPAR 404
+P L +++ E + H V G ++ +L I+ P L +L A+
Sbjct: 456 KKPWALAKQEGQEQQVHNVCSV--------GINLFRQLAIYLSPVLPTLAAQ 499
>sp|P48784|HFOB_METFO Archaeal histone B OS=Methanobacterium formicicum GN=hfoB PE=3
SV=1
Length = 67
Score = 35.0 bits (79), Expect = 1.4, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDE 63
+P + I ++ G S DA ALA +E + I EA+K +H+ R T+ DV+
Sbjct: 3 LPIAPIGRIIKNAGAERVSDDAREALAKALEEKGETIATEAVKLAKHAGRKTVKASDVEL 62
Query: 64 ALK 66
A+K
Sbjct: 63 AVK 65
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66
VE + + G S S DA + LA +E +I ++A + +H+ R T+ DD+ AL+
Sbjct: 13 VERLLRKAGASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDIKLALR 70
>sp|P50484|HMTB_METTH DNA-binding protein HMt-2 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtB PE=3 SV=1
Length = 67
Score = 34.7 bits (78), Expect = 2.1, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDE 63
+P + I ++ G S DA ALA +E + EI + A+K +H+ R T+ D++
Sbjct: 3 LPIAPIGRIIKNAGAEIVSDDAREALAKVLEAKGEEIAENAVKLAKHAGRKTVKASDIEL 62
Query: 64 ALK 66
A+K
Sbjct: 63 AVK 65
>sp|P50483|HMT1_METTH DNA-binding protein HMt-1.1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=hmtA1 PE=3 SV=2
Length = 68
Score = 34.3 bits (77), Expect = 2.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V I ++ G S DA ALA +E EI ++A++ +H+ R T+ D
Sbjct: 1 MAELPIAPVGRIIKNAGAQRISDDAKEALAKALEEMGEEISRKAVELAKHAGRKTVKATD 60
Query: 61 VDEALK 66
++ A K
Sbjct: 61 IEMAAK 66
>sp|P95669|HANA_THEZI Archaeal histone HAN1 subunit A OS=Thermococcus zilligii GN=han1A
PE=1 SV=3
Length = 67
Score = 34.3 bits (77), Expect = 2.4, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P ++ + + G S DAA ALA +E E+ ++A + RH+ R T+ +D
Sbjct: 1 MAELPIAPIDRLIRKAGAERVSEDAAKALAEYLEEYAIEVGKKATEFARHAGRKTVKAED 60
Query: 61 VDEALK 66
V A+K
Sbjct: 61 VRLAVK 66
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 33.9 bits (76), Expect = 3.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V+ + + G S DAA LA +E E+ ++A+ RH+ R T+ +D
Sbjct: 1 MAELPIAPVDRLIRKAGAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|Q9Y8I2|HARB_PYRKO Archaeal histone B OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkB PE=3 SV=1
Length = 67
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V+ + + G + S +AA LA +E + EI ++A+ +H+ R T+ +D
Sbjct: 1 MAELPIAPVDRLIRKAGAARVSEEAAKVLAEHLEEKALEIAKKAVALAQHAGRKTVKAED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|P48782|HFO1_METFO Archaeal histone A1 OS=Methanobacterium formicicum GN=hfoA1 PE=1
SV=3
Length = 68
Score = 33.5 bits (75), Expect = 3.9, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V I ++ G S DA ALA +E I EA+K +H+ R T+ D
Sbjct: 1 MAELPIAPVGRIIKNAGAPRVSDDARDALAKVLEEMGEGIAAEAVKLAKHAGRKTVKASD 60
Query: 61 VDEALK 66
++ A+K
Sbjct: 61 IEMAVK 66
>sp|O59627|HARB_PYRFU Archaeal histone B OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1722 PE=3 SV=2
Length = 67
Score = 33.5 bits (75), Expect = 4.0, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P V+ + + G S AA LA +E + EI ++A+ +H+ R T+ +D
Sbjct: 1 MGELPIAPVDRLIRKAGAQRVSEQAAKVLAEHLEEKAIEIAKKAVDLAKHAGRKTVKVED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|Q9HGL2|YHLA_SCHPO Uncharacterized calcium-binding protein C800.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC800.10c PE=4 SV=1
Length = 1116
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 170 LSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNY 229
LS E Q FD++ ++A + V+ + V SGL P V + +AD +RG +
Sbjct: 5 LSAEEQTAFDQLFKIADKQDIGVITGEEAVPFLEKSGLAPQVLGQIWQIADAENRGFLTF 64
Query: 230 SLLFALMRVV 239
S MR+V
Sbjct: 65 SGFVIAMRLV 74
>sp|O74098|HARA_PYRHO Archaeal histone A OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1782.1
PE=1 SV=2
Length = 67
Score = 33.1 bits (74), Expect = 5.4, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P V+ + + G S AA LA +E EI ++A++ RH+ R T+ +D
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|P57838|SYM_PASMU Methionine--tRNA ligase OS=Pasteurella multocida (strain Pm70)
GN=metG PE=3 SV=1
Length = 682
Score = 32.7 bits (73), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 248 IQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRL 307
IQ YL L P + A +L NR+ D L DF +L A + ++ ++ + +
Sbjct: 340 IQASTYLRHLAPEYLRYYYAAKLNNRIEDLDLNLEDFVQRLNADVVNKFVNLASRSAGFI 399
Query: 308 TKTL 311
TK
Sbjct: 400 TKRF 403
>sp|Q8SQP3|H3L_ENCCU Histone H3-like protein OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU09_0450 PE=3 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 6.8, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 21 FSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYG 75
F A +A VE + +M++A +C+ H++R TL D+ K++ +Y
Sbjct: 83 FQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDICLVYKIKYANILYA 137
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 32.7 bits (73), Expect = 7.7, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M+ +P V+ + + G S DA + +E + ++A++ +HS R T+T DD
Sbjct: 1 MAELPMAPVDRLIRKAGAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADD 60
Query: 61 VDEALKL 67
+ AL +
Sbjct: 61 IKLALSM 67
>sp|P50485|HARA_PYRSG Archaeal histone A OS=Pyrococcus sp. (strain GB-3a) GN=hpyA1 PE=3
SV=1
Length = 67
Score = 32.7 bits (73), Expect = 7.9, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P V+ + + G S +AA LA +E E+ ++A++ RH+ R T+ +D
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEEAAKILAEYLEEYAIEVSKKAVEFARHAGRKTVKAED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|P61882|HARA_PYRFU Archaeal histone A OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=PF1831 PE=3 SV=1
Length = 67
Score = 32.7 bits (73), Expect = 8.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P V+ + + G S AA LA +E E+ ++A++ RH+ R T+ +D
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
>sp|P61881|HARA_PYRAB Archaeal histone A OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB03470 PE=3 SV=1
Length = 67
Score = 32.7 bits (73), Expect = 8.1, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60
M +P V+ + + G S AA LA +E E+ ++A++ RH+ R T+ +D
Sbjct: 1 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEVAKKAVEFARHAGRKTVKVED 60
Query: 61 VDEALK 66
+ A+K
Sbjct: 61 IKLAIK 66
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,322,662
Number of Sequences: 539616
Number of extensions: 8732615
Number of successful extensions: 25410
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 25236
Number of HSP's gapped (non-prelim): 167
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)