Query 009148
Match_columns 542
No_of_seqs 178 out of 329
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 21:00:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009148.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009148hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2549 Transcription initiati 100.0 4E-116 9E-121 932.6 40.3 531 2-542 9-576 (576)
2 COG5095 TAF6 Transcription ini 100.0 5E-103 1E-107 784.5 25.8 389 3-394 5-413 (450)
3 cd08050 TAF6 TATA Binding Prot 100.0 1.7E-96 4E-101 766.8 33.8 335 5-340 1-343 (343)
4 PF07571 DUF1546: Protein of u 100.0 2.3E-30 5E-35 223.4 6.3 91 261-351 1-92 (92)
5 PF02969 TAF: TATA box binding 99.9 7.8E-25 1.7E-29 178.0 8.5 66 1-66 1-66 (66)
6 smart00803 TAF TATA box bindin 99.8 7.3E-20 1.6E-24 148.7 8.7 65 2-66 1-65 (65)
7 cd00076 H4 Histone H4, one of 99.5 3.5E-14 7.5E-19 121.2 9.6 74 2-76 12-85 (85)
8 PLN00035 histone H4; Provision 99.5 5E-14 1.1E-18 123.8 9.8 74 3-77 29-102 (103)
9 PTZ00015 histone H4; Provision 99.5 1.4E-13 3E-18 121.0 9.5 73 3-76 30-102 (102)
10 COG2036 HHT1 Histones H3 and H 99.0 9.9E-10 2.1E-14 95.0 7.0 69 2-70 18-86 (91)
11 smart00417 H4 Histone H4. 99.0 1.1E-09 2.3E-14 91.5 6.6 62 3-64 13-74 (74)
12 cd07979 TAF9 TATA Binding Prot 98.9 1.2E-08 2.7E-13 92.2 9.7 70 6-78 4-73 (117)
13 smart00576 BTP Bromodomain tra 98.4 1.2E-06 2.6E-11 73.5 8.9 64 7-70 10-73 (77)
14 PF00125 Histone: Core histone 98.3 1.9E-06 4.1E-11 71.0 6.6 65 3-67 5-74 (75)
15 PF00808 CBFD_NFYB_HMF: Histon 98.2 7.7E-06 1.7E-10 66.1 8.1 63 3-65 2-65 (65)
16 KOG3467 Histone H4 [Chromatin 98.1 1.1E-05 2.4E-10 68.9 8.1 73 4-77 30-102 (103)
17 cd07981 TAF12 TATA Binding Pro 98.1 1.8E-05 3.8E-10 65.8 9.1 64 4-67 2-66 (72)
18 PF07524 Bromo_TP: Bromodomain 97.8 0.00012 2.7E-09 61.1 8.9 64 7-70 10-73 (77)
19 cd00074 H2A Histone 2A; H2A is 97.7 0.00011 2.5E-09 66.4 7.5 65 3-67 20-85 (115)
20 smart00428 H3 Histone H3. 97.6 0.00028 6E-09 63.0 8.1 63 8-70 38-103 (105)
21 PF02291 TFIID-31kDa: Transcri 97.3 0.00088 1.9E-08 61.9 8.1 62 7-68 16-77 (129)
22 PF15630 CENP-S: Kinetochore c 97.2 0.0015 3.2E-08 55.2 7.3 59 8-66 10-71 (76)
23 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0058 1.2E-07 53.7 7.0 77 232-321 7-83 (97)
24 KOG3334 Transcription initiati 96.5 0.013 2.8E-07 54.9 8.3 63 8-70 18-80 (148)
25 KOG0869 CCAAT-binding factor, 96.4 0.014 3.1E-07 55.2 8.2 69 3-71 32-102 (168)
26 PLN00160 histone H3; Provision 96.4 0.012 2.5E-07 52.0 7.1 63 8-70 30-94 (97)
27 PTZ00018 histone H3; Provision 96.3 0.011 2.5E-07 55.0 7.0 63 8-71 71-135 (136)
28 PLN00121 histone H3; Provision 96.3 0.012 2.6E-07 54.9 7.1 62 8-70 71-134 (136)
29 PLN00161 histone H3; Provision 96.2 0.021 4.5E-07 53.1 8.1 66 8-73 64-131 (135)
30 cd08048 TAF11 TATA Binding Pro 95.5 0.089 1.9E-06 45.4 8.4 66 3-68 16-84 (85)
31 PF15511 CENP-T: Centromere ki 95.3 0.04 8.6E-07 60.0 7.1 58 3-60 351-414 (414)
32 PF12348 CLASP_N: CLASP N term 95.3 0.17 3.7E-06 49.4 10.9 183 189-392 19-216 (228)
33 PF03847 TFIID_20kDa: Transcri 94.8 0.17 3.6E-06 41.9 7.8 62 6-67 2-64 (68)
34 COG5094 TAF9 Transcription ini 94.7 0.085 1.8E-06 48.3 6.3 61 8-68 19-82 (145)
35 KOG1142 Transcription initiati 94.5 0.08 1.7E-06 54.0 6.4 71 16-87 168-239 (258)
36 KOG4336 TBP-associated transcr 94.3 0.14 2.9E-06 53.5 7.6 69 8-76 10-80 (323)
37 KOG0870 DNA polymerase epsilon 93.8 0.27 5.8E-06 47.2 7.9 71 3-73 10-83 (172)
38 smart00414 H2A Histone 2A. 93.6 0.2 4.4E-06 44.9 6.5 65 3-67 9-74 (106)
39 KOG2389 Predicted bromodomain 92.9 0.23 4.9E-06 52.7 6.5 67 5-71 31-97 (353)
40 PLN00154 histone H2A; Provisio 92.8 0.34 7.3E-06 45.3 6.8 65 3-67 38-104 (136)
41 smart00427 H2B Histone H2B. 92.6 0.68 1.5E-05 40.4 7.9 49 20-68 19-67 (89)
42 KOG2023 Nuclear transport rece 92.6 2.2 4.8E-05 49.1 13.9 167 185-360 223-444 (885)
43 COG5262 HTA1 Histone H2A [Chro 92.2 0.3 6.5E-06 44.5 5.4 65 2-66 25-90 (132)
44 PF02985 HEAT: HEAT repeat; I 91.9 0.33 7.2E-06 33.5 4.3 30 257-295 1-30 (31)
45 PF04719 TAFII28: hTAFII28-lik 91.6 0.86 1.9E-05 39.8 7.5 66 2-67 22-89 (90)
46 KOG1756 Histone 2A [Chromatin 91.4 0.5 1.1E-05 43.6 6.1 64 3-66 27-91 (131)
47 PF12460 MMS19_C: RNAPII trans 91.2 7.3 0.00016 42.3 16.0 180 196-383 24-220 (415)
48 PTZ00017 histone H2A; Provisio 91.1 0.5 1.1E-05 44.1 5.9 64 3-66 27-91 (134)
49 PTZ00463 histone H2B; Provisio 90.9 0.79 1.7E-05 41.8 6.7 48 21-68 47-94 (117)
50 PF13513 HEAT_EZ: HEAT-like re 90.4 0.17 3.7E-06 38.8 1.9 55 279-335 1-55 (55)
51 PLN00158 histone H2B; Provisio 90.3 0.92 2E-05 41.4 6.7 60 9-68 33-93 (116)
52 KOG2171 Karyopherin (importin) 89.6 8.4 0.00018 46.7 15.5 256 175-442 3-308 (1075)
53 PLN00157 histone H2A; Provisio 89.3 0.73 1.6E-05 43.0 5.3 63 4-66 27-90 (132)
54 KOG1242 Protein containing ada 89.2 13 0.00029 42.3 16.0 148 176-337 133-283 (569)
55 KOG1242 Protein containing ada 88.5 18 0.00039 41.3 16.4 205 169-389 167-451 (569)
56 PLN00156 histone H2AX; Provisi 88.3 1.2 2.5E-05 41.9 6.0 63 4-66 30-93 (139)
57 PLN00153 histone H2A; Provisio 88.3 1 2.3E-05 41.8 5.6 63 4-66 25-88 (129)
58 KOG1745 Histones H3 and H4 [Ch 87.6 0.33 7.2E-06 45.4 1.9 50 20-69 85-134 (137)
59 KOG1824 TATA-binding protein-i 87.5 9 0.00019 46.0 13.6 118 207-335 514-636 (1233)
60 PF02269 TFIID-18kDa: Transcri 87.2 0.72 1.6E-05 40.3 3.7 49 19-67 18-66 (93)
61 cd08045 TAF4 TATA Binding Prot 86.0 2.7 5.9E-05 41.7 7.6 63 7-69 52-120 (212)
62 PF05236 TAF4: Transcription i 86.0 0.69 1.5E-05 47.3 3.5 64 7-70 51-120 (264)
63 KOG0871 Class 2 transcription 85.2 5.3 0.00011 38.0 8.5 68 3-70 12-81 (156)
64 cd07978 TAF13 The TATA Binding 83.9 4.5 9.7E-05 35.4 7.1 58 9-67 8-66 (92)
65 PTZ00252 histone H2A; Provisio 83.9 3.2 6.8E-05 38.9 6.4 63 4-66 26-91 (134)
66 PRK07452 DNA polymerase III su 83.6 3.1 6.8E-05 43.1 7.1 60 6-66 136-197 (326)
67 KOG3423 Transcription initiati 82.7 7.5 0.00016 37.7 8.5 68 3-70 86-167 (176)
68 PF14911 MMS22L_C: S-phase gen 81.9 12 0.00027 40.6 10.9 120 230-357 226-351 (373)
69 PRK05574 holA DNA polymerase I 80.7 4.8 0.0001 41.6 7.2 60 7-67 153-212 (340)
70 TIGR01128 holA DNA polymerase 80.6 5 0.00011 40.6 7.2 60 7-67 118-177 (302)
71 PF09415 CENP-X: CENP-S associ 80.4 2.1 4.6E-05 35.9 3.6 61 5-66 1-66 (72)
72 PRK06585 holA DNA polymerase I 80.3 4.4 9.4E-05 42.4 6.8 59 7-66 149-208 (343)
73 COG1466 HolA DNA polymerase II 80.1 4.8 0.0001 42.4 7.1 59 7-66 147-205 (334)
74 KOG0212 Uncharacterized conser 79.6 9.2 0.0002 43.5 9.1 135 178-346 24-158 (675)
75 cd00020 ARM Armadillo/beta-cat 77.9 8.8 0.00019 32.4 6.8 94 210-318 8-103 (120)
76 PRK07914 hypothetical protein; 77.3 5.5 0.00012 41.6 6.4 59 6-66 134-192 (320)
77 KOG2023 Nuclear transport rece 76.6 14 0.0003 43.0 9.5 194 196-408 377-570 (885)
78 PRK05629 hypothetical protein; 76.1 7.4 0.00016 40.5 7.0 57 7-65 133-189 (318)
79 PRK08487 DNA polymerase III su 76.0 8.1 0.00018 40.5 7.3 57 6-65 141-197 (328)
80 PRK05907 hypothetical protein; 75.9 6.4 0.00014 41.5 6.5 60 6-66 140-201 (311)
81 PF13654 AAA_32: AAA domain; P 75.6 10 0.00023 42.7 8.4 62 8-69 435-507 (509)
82 KOG3219 Transcription initiati 75.2 4.3 9.4E-05 40.2 4.6 70 2-71 111-181 (195)
83 cd00020 ARM Armadillo/beta-cat 74.7 18 0.00039 30.4 7.9 70 209-293 49-119 (120)
84 PF03540 TFIID_30kDa: Transcri 72.5 23 0.00049 28.0 7.1 48 3-50 2-49 (51)
85 PF03378 CAS_CSE1: CAS/CSE pro 69.4 24 0.00052 39.0 9.2 143 249-413 19-176 (435)
86 KOG2171 Karyopherin (importin) 69.0 93 0.002 38.2 14.3 187 195-398 330-517 (1075)
87 TIGR02902 spore_lonB ATP-depen 68.9 15 0.00032 41.5 7.7 60 9-69 272-333 (531)
88 KOG1744 Histone H2B [Chromatin 68.7 15 0.00033 34.1 6.3 48 21-68 56-103 (127)
89 PF10508 Proteasom_PSMB: Prote 68.6 58 0.0013 36.5 12.2 158 175-344 36-199 (503)
90 PF01602 Adaptin_N: Adaptin N 68.3 46 0.001 36.3 11.2 69 253-335 111-179 (526)
91 PF11864 DUF3384: Domain of un 66.3 1.2E+02 0.0027 33.5 14.1 135 170-314 64-225 (464)
92 TIGR02397 dnaX_nterm DNA polym 64.5 15 0.00033 38.1 6.3 57 7-65 183-239 (355)
93 COG5247 BUR6 Class 2 transcrip 61.8 25 0.00055 31.6 6.1 63 3-67 23-88 (113)
94 KOG1967 DNA repair/transcripti 60.8 48 0.001 40.0 9.8 140 175-321 862-1010(1030)
95 COG5150 Class 2 transcription 59.9 45 0.00098 31.1 7.5 69 3-71 11-81 (148)
96 PRK12402 replication factor C 58.9 22 0.00048 36.5 6.3 58 7-67 191-248 (337)
97 PF05004 IFRD: Interferon-rela 58.5 1.4E+02 0.003 31.4 12.1 98 249-356 79-184 (309)
98 PF03224 V-ATPase_H_N: V-ATPas 58.0 2E+02 0.0043 29.9 13.1 159 168-346 24-189 (312)
99 TIGR00764 lon_rel lon-related 56.5 41 0.00088 38.8 8.3 61 9-69 318-392 (608)
100 PF13251 DUF4042: Domain of un 56.0 66 0.0014 31.6 8.6 137 235-383 6-175 (182)
101 PRK09687 putative lyase; Provi 55.2 17 0.00037 37.6 4.6 57 276-338 102-158 (280)
102 PRK14964 DNA polymerase III su 54.7 27 0.00058 39.3 6.4 58 7-66 182-239 (491)
103 PF06371 Drf_GBD: Diaphanous G 54.6 15 0.00032 34.6 3.8 78 205-293 107-186 (187)
104 COG5208 HAP5 CCAAT-binding fac 54.3 23 0.0005 35.8 5.1 67 4-70 110-177 (286)
105 PF01602 Adaptin_N: Adaptin N 54.0 1.6E+02 0.0034 32.2 12.2 91 280-388 392-482 (526)
106 PF08506 Cse1: Cse1; InterPro 52.1 51 0.0011 35.7 7.8 143 232-378 159-333 (370)
107 PF13646 HEAT_2: HEAT repeats; 51.3 54 0.0012 26.5 6.2 51 276-338 11-61 (88)
108 PF12348 CLASP_N: CLASP N term 50.9 2E+02 0.0043 27.9 11.1 65 227-300 143-212 (228)
109 TIGR03015 pepcterm_ATPase puta 50.1 61 0.0013 32.2 7.6 58 12-69 204-267 (269)
110 PF12717 Cnd1: non-SMC mitotic 49.3 1.1E+02 0.0023 29.3 8.8 91 278-383 1-93 (178)
111 KOG3901 Transcription initiati 48.8 45 0.00098 30.1 5.6 42 23-67 30-71 (109)
112 KOG1659 Class 2 transcription 48.6 64 0.0014 32.6 7.2 66 3-68 13-79 (224)
113 PF12719 Cnd3: Nuclear condens 48.3 49 0.0011 34.2 6.8 57 277-335 76-141 (298)
114 COG5248 TAF19 Transcription in 48.2 48 0.001 30.2 5.6 43 23-67 30-72 (126)
115 PRK09087 hypothetical protein; 48.1 92 0.002 31.1 8.4 60 8-68 161-222 (226)
116 PRK14970 DNA polymerase III su 47.9 42 0.00092 35.5 6.3 57 8-66 175-231 (367)
117 KOG0212 Uncharacterized conser 47.5 2.6E+02 0.0056 32.4 12.4 140 208-361 162-302 (675)
118 KOG1658 DNA polymerase epsilon 47.2 14 0.00031 35.4 2.4 68 1-68 57-125 (162)
119 KOG1823 DRIM (Down-regulated i 46.3 60 0.0013 40.7 7.8 116 235-362 544-662 (1364)
120 PRK09687 putative lyase; Provi 43.4 3.9E+02 0.0086 27.6 15.0 133 174-338 88-222 (280)
121 PRK14961 DNA polymerase III su 42.6 37 0.00079 36.3 4.9 60 8-69 186-245 (363)
122 PRK09111 DNA polymerase III su 41.9 55 0.0012 37.7 6.4 57 7-65 198-254 (598)
123 PRK00411 cdc6 cell division co 41.8 1.2E+02 0.0027 32.0 8.8 49 20-68 228-282 (394)
124 PF13513 HEAT_EZ: HEAT-like re 41.6 30 0.00065 26.2 3.0 42 242-292 14-55 (55)
125 PF08623 TIP120: TATA-binding 41.3 2.7E+02 0.0058 27.2 10.1 128 250-385 3-140 (169)
126 PRK00440 rfc replication facto 41.2 66 0.0014 32.6 6.4 56 7-65 168-223 (319)
127 COG1067 LonB Predicted ATP-dep 40.5 86 0.0019 36.6 7.7 59 9-67 327-398 (647)
128 PRK14955 DNA polymerase III su 40.1 65 0.0014 34.9 6.4 57 8-65 194-254 (397)
129 PF12074 DUF3554: Domain of un 39.3 1.4E+02 0.0031 31.2 8.7 91 217-317 164-255 (339)
130 KOG1991 Nuclear transport rece 38.9 6.4E+02 0.014 31.1 14.4 136 210-355 407-552 (1010)
131 PF11865 DUF3385: Domain of un 38.8 2.2E+02 0.0048 27.0 9.1 122 250-385 2-160 (160)
132 PRK14953 DNA polymerase III su 38.8 67 0.0015 36.0 6.4 57 7-65 185-241 (486)
133 PF12755 Vac14_Fab1_bd: Vacuol 38.1 1.9E+02 0.0041 25.4 7.8 82 288-375 9-90 (97)
134 KOG1824 TATA-binding protein-i 37.9 5.7E+02 0.012 31.7 13.6 147 228-388 226-408 (1233)
135 COG5162 Transcription initiati 37.8 1.8E+02 0.0039 28.4 8.1 47 3-49 88-134 (197)
136 PRK08727 hypothetical protein; 36.9 1E+02 0.0022 30.7 6.8 57 9-67 171-230 (233)
137 KOG1992 Nuclear export recepto 36.7 76 0.0016 38.0 6.4 105 301-415 588-699 (960)
138 PF10363 DUF2435: Protein of u 35.6 1.2E+02 0.0026 26.4 6.2 67 278-348 16-82 (92)
139 PRK06620 hypothetical protein; 34.7 90 0.002 30.9 5.9 57 8-66 155-214 (214)
140 PRK14962 DNA polymerase III su 34.6 99 0.0021 34.6 6.8 58 8-67 184-241 (472)
141 PRK06645 DNA polymerase III su 34.5 91 0.002 35.3 6.6 60 7-67 194-255 (507)
142 KOG1851 Uncharacterized conser 34.4 1.8E+02 0.0039 37.3 9.3 113 209-335 1522-1636(1710)
143 TIGR03420 DnaA_homol_Hda DnaA 34.0 1.6E+02 0.0035 28.3 7.5 56 9-66 168-226 (226)
144 PF12231 Rif1_N: Rap1-interact 33.2 6.4E+02 0.014 27.1 13.4 184 178-385 14-207 (372)
145 TIGR00635 ruvB Holliday juncti 33.0 1.9E+02 0.0041 29.4 8.2 60 8-68 167-229 (305)
146 PRK14954 DNA polymerase III su 32.2 75 0.0016 36.9 5.5 57 8-65 194-254 (620)
147 cd00155 RasGEF Guanine nucleot 32.0 1.8E+02 0.004 28.6 7.7 73 169-244 118-200 (237)
148 PF10274 ParcG: Parkin co-regu 31.3 2E+02 0.0044 28.4 7.6 91 205-298 72-168 (183)
149 COG1938 Archaeal enzymes of AT 31.2 1.2E+02 0.0027 31.2 6.3 46 8-54 192-237 (244)
150 COG4996 Predicted phosphatase 31.2 40 0.00087 32.0 2.6 74 35-108 40-134 (164)
151 PRK14963 DNA polymerase III su 31.0 1E+02 0.0023 34.7 6.3 56 7-65 182-237 (504)
152 PF10521 DUF2454: Protein of u 30.7 4.6E+02 0.01 27.0 10.6 88 239-335 101-204 (282)
153 TIGR02928 orc1/cdc6 family rep 30.3 2.5E+02 0.0054 29.3 8.7 49 20-68 220-274 (365)
154 TIGR00362 DnaA chromosomal rep 30.2 1.4E+02 0.0029 32.3 6.9 58 8-67 276-336 (405)
155 PF14500 MMS19_N: Dos2-interac 30.0 4.6E+02 0.0099 27.1 10.3 121 189-321 11-138 (262)
156 PRK06305 DNA polymerase III su 29.9 1.2E+02 0.0026 33.6 6.5 56 8-65 188-243 (451)
157 PRK00080 ruvB Holliday junctio 29.6 2.2E+02 0.0048 29.7 8.1 62 8-70 188-252 (328)
158 smart00147 RasGEF Guanine nucl 29.4 2.1E+02 0.0045 28.4 7.6 71 169-243 118-198 (242)
159 KOG0213 Splicing factor 3b, su 29.3 1.9E+02 0.004 34.8 7.8 99 276-385 487-585 (1172)
160 PRK08084 DNA replication initi 29.3 1.7E+02 0.0038 29.1 7.0 57 9-66 176-234 (235)
161 PRK14971 DNA polymerase III su 28.9 77 0.0017 36.6 4.9 57 7-65 187-243 (614)
162 KOG1241 Karyopherin (importin) 28.8 2.9E+02 0.0062 33.1 9.3 174 207-390 404-585 (859)
163 PF08167 RIX1: rRNA processing 28.8 5.1E+02 0.011 24.5 10.5 78 279-357 39-123 (165)
164 KOG0213 Splicing factor 3b, su 28.6 5E+02 0.011 31.4 11.0 102 276-387 727-833 (1172)
165 KOG1241 Karyopherin (importin) 28.1 1.1E+03 0.025 28.4 16.5 174 200-387 482-673 (859)
166 COG5593 Nucleic-acid-binding p 28.1 86 0.0019 35.9 4.8 123 202-335 162-294 (821)
167 PF03542 Tuberin: Tuberin; In 28.1 6.5E+02 0.014 27.3 11.5 122 228-357 155-283 (356)
168 PRK13765 ATP-dependent proteas 27.3 2.3E+02 0.005 33.1 8.4 58 9-66 324-398 (637)
169 smart00544 MA3 Domain in DAP-5 27.3 3.1E+02 0.0068 23.7 7.5 44 252-304 32-75 (113)
170 PRK14958 DNA polymerase III su 26.8 1.5E+02 0.0033 33.5 6.7 61 8-70 186-246 (509)
171 PRK14959 DNA polymerase III su 26.7 1.4E+02 0.0031 34.7 6.5 56 8-65 186-241 (624)
172 KOG1657 CCAAT-binding factor, 26.4 1E+02 0.0022 31.6 4.7 67 3-69 74-141 (236)
173 PF12830 Nipped-B_C: Sister ch 26.3 6E+02 0.013 24.5 10.2 87 174-315 6-92 (187)
174 PTZ00429 beta-adaptin; Provisi 26.1 1.2E+03 0.026 28.0 15.4 153 177-355 69-228 (746)
175 PRK04195 replication factor C 25.9 1.4E+02 0.003 33.1 6.2 55 8-65 168-222 (482)
176 PRK14950 DNA polymerase III su 25.8 1.5E+02 0.0032 34.0 6.4 56 8-65 187-242 (585)
177 PTZ00361 26 proteosome regulat 25.8 74 0.0016 35.3 3.9 36 32-67 388-423 (438)
178 PRK08691 DNA polymerase III su 25.0 1.7E+02 0.0037 34.6 6.8 60 7-68 185-244 (709)
179 PF12460 MMS19_C: RNAPII trans 25.0 9.1E+02 0.02 26.2 14.6 168 173-360 186-375 (415)
180 PRK05563 DNA polymerase III su 24.8 1.6E+02 0.0035 33.6 6.5 57 7-65 185-241 (559)
181 PRK08451 DNA polymerase III su 24.4 1.8E+02 0.0039 33.3 6.7 56 8-65 184-239 (535)
182 COG1224 TIP49 DNA helicase TIP 24.2 1.7E+02 0.0036 32.4 6.0 59 8-67 369-431 (450)
183 PF04793 Herpes_BBRF1: BRRF1-l 24.2 7.7E+02 0.017 26.1 10.8 123 170-305 30-163 (284)
184 KOG0211 Protein phosphatase 2A 23.7 3E+02 0.0065 33.0 8.5 74 276-351 529-604 (759)
185 KOG1248 Uncharacterized conser 23.5 2.2E+02 0.0048 35.4 7.4 107 174-297 783-901 (1176)
186 PF07766 LETM1: LETM1-like pro 23.3 2.9E+02 0.0064 28.5 7.5 67 4-73 171-237 (268)
187 cd03571 ENTH_epsin ENTH domain 23.0 3.4E+02 0.0073 25.0 7.1 95 285-381 18-117 (123)
188 PRK06647 DNA polymerase III su 22.8 1.9E+02 0.0041 33.2 6.5 58 8-67 186-243 (563)
189 COG5215 KAP95 Karyopherin (imp 22.7 1.1E+03 0.024 27.8 12.1 113 241-361 440-556 (858)
190 PRK08903 DnaA regulatory inact 22.6 2.7E+02 0.0058 27.1 6.9 57 8-66 165-224 (227)
191 PRK00149 dnaA chromosomal repl 22.4 1.7E+02 0.0036 32.1 5.9 59 8-68 288-349 (450)
192 COG1424 BioW Pimeloyl-CoA synt 22.3 97 0.0021 31.2 3.5 72 27-109 144-226 (239)
193 PRK06893 DNA replication initi 22.1 2.6E+02 0.0056 27.7 6.7 57 8-66 169-228 (229)
194 PF04826 Arm_2: Armadillo-like 21.9 6E+02 0.013 26.1 9.4 141 182-334 59-202 (254)
195 COG1737 RpiR Transcriptional r 21.9 2.1E+02 0.0046 29.4 6.2 77 4-81 48-143 (281)
196 cd08319 Death_RAIDD Death doma 21.9 2.1E+02 0.0046 24.5 5.2 62 10-75 17-80 (83)
197 PRK14960 DNA polymerase III su 21.7 1.3E+02 0.0027 35.6 4.8 61 8-70 185-245 (702)
198 PF09862 DUF2089: Protein of u 21.3 1.1E+02 0.0024 27.9 3.5 26 289-314 52-77 (113)
199 PRK14087 dnaA chromosomal repl 21.2 2.2E+02 0.0048 31.6 6.5 61 7-67 282-347 (450)
200 KOG3547 Bestrophin (Best vitel 21.1 92 0.002 34.8 3.5 68 167-247 51-118 (450)
201 PF12397 U3snoRNP10: U3 small 21.1 5.8E+02 0.013 22.5 10.4 54 251-317 1-54 (121)
202 PRK14965 DNA polymerase III su 20.9 2E+02 0.0043 33.0 6.3 56 8-65 186-241 (576)
203 PRK00034 gatC aspartyl/glutamy 20.6 2.6E+02 0.0057 23.9 5.6 36 1-38 1-36 (95)
204 smart00323 RasGAP GTPase-activ 20.4 4.5E+02 0.0097 27.8 8.4 102 208-316 69-186 (344)
205 cd05136 RasGAP_DAB2IP The DAB2 20.3 1E+03 0.023 25.2 11.5 105 209-317 46-164 (309)
206 cd08780 Death_TRADD Death Doma 20.2 3.1E+02 0.0067 24.3 5.8 62 10-71 17-81 (90)
No 1
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4e-116 Score=932.57 Aligned_cols=531 Identities=43% Similarity=0.650 Sum_probs=457.8
Q ss_pred CCCC-hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCCCC
Q 009148 2 SIVP-KETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGG 80 (542)
Q Consensus 2 s~~p-~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~ 80 (542)
++++ +|++|.+|||+||++|+||+|..||+||||||+||+|+|.|||+|+||++||++||+.||+++|+||+|||.+++
T Consensus 9 ~v~s~~Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVep~yg~~s~~ 88 (576)
T KOG2549|consen 9 TVVSPKESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVEPLYGFGAQE 88 (576)
T ss_pred cccCcHHHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccccccCcccCc
Confidence 4566 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeecCC-CCceeeecCcccCHHHHhhccCCCCCCCCceeeeeeeeccccCCCCCCccccccc------------C--
Q 009148 81 PLRFRRAIG-YRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIA------------A-- 145 (542)
Q Consensus 81 pl~F~~a~g-~~~lyy~eDkeVdL~~ii~a~LPk~P~~~s~~aHWLaIeGvQP~IPENp~~~~i~------------~-- 145 (542)
+++|+++.| ++++||.+|+||||++++++||||+|+++++++|||+||||||+|||||++.... .
T Consensus 89 ~i~fr~a~~~~r~ly~~~d~EVD~d~~i~~plpkvP~d~~i~sHWL~iEGVQP~iPeNp~p~~~~~~~~~~~~~~~~~~~ 168 (576)
T KOG2549|consen 89 IIPFRKASGGGRELYYPEDEEVDLDEIINAPLPKVPLDVSIKSHWLAIEGVQPAIPENPPPLEKNVQKKEVIEPAIKAPE 168 (576)
T ss_pred eeeccccCCCCceeecCchhhcchhhhhcCCCCCCCccceeeeeeeeeccccccCCCCCCccccchhhhcccchhhhccC
Confidence 999999844 4899999999999999999999999999999999999999999999999753210 0
Q ss_pred ---CCC-----CCCCCCCCCCcccccCcccccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHH
Q 009148 146 ---PSN-----GTNNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYF 217 (542)
Q Consensus 146 ---p~~-----~k~~~~~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~F 217 (542)
|.. .+.+....+.++.+||.++|+||+|||+||++||++|++. ++.+|++||++|+||+|||||||||++|
T Consensus 169 ~~~~~~~~~~~~~~~~~k~~e~~~~Kp~~~h~LS~ElQlYy~~It~a~~g~-~~~~r~eAL~sL~TDsGL~~LlPyFv~f 247 (576)
T KOG2549|consen 169 GNNPGASTKSSDAVKTLKIGEPVELKPSSKHVLSVELQLYYKEITEACTGS-DEPLRQEALQSLETDSGLQQLLPYFVTF 247 (576)
T ss_pred CCCCCccccccccccccccCCcccccccchhhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHhhccCccHHHHHHHHHHH
Confidence 100 0111124567899999999999999999999999999995 4578999999999999999999999999
Q ss_pred HHHHhhcc--CCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCC-CCccHHHHHHHHHHHHHHHH
Q 009148 218 VADEVSRG--LNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICK 294 (542)
Q Consensus 218 I~e~V~~n--l~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~ 294 (542)
|+++|+.| ++|+..|+++|||++||++||+|++|||||+|||+||||+|+|++|.+| .||||+||||||++|++||+
T Consensus 248 Iae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k 327 (576)
T KOG2549|consen 248 IAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICK 327 (576)
T ss_pred HhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHH
Confidence 99999999 8999999999999999999999999999999999999999999999986 79999999999999999999
Q ss_pred HhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHH
Q 009148 295 RYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAW 374 (542)
Q Consensus 295 k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~ 374 (542)
+|++.|.+|++||++||.|+|+|+++++++|||||+||++||.++|+.+|+|+|..|+.+|++++..+..+|.+.+.||+
T Consensus 328 ~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~ 407 (576)
T KOG2549|consen 328 NFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEAN 407 (576)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888989999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhcccC-cccc-cCccccCCccccCC-CccccccccCCCCcccCCCCCC
Q 009148 375 RVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWKTNG-IVAT-LSNKRKTSMDLEEQ-PPLKKIATDGPVDAVSTSSMPT 451 (542)
Q Consensus 375 ~v~gaLl~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 451 (542)
+|+++|++++..|+.+++...+.++.|-.+...++-| +++. ...||+++-++..- -|.+.+. ++++ ++.
T Consensus 408 ~v~~~llk~~~~ii~~~l~~~~~~~~~~~r~~~~~~g~~l~~e~~~~r~~~l~~~~~~~~~~~l~-~~p~-------~~~ 479 (576)
T KOG2549|consen 408 KVYGALLKAENPIIRDKLNSAPDNPVPALRRLRGSLGESLLSEVVKKRQAPLDSSSVTLPVQQLV-APPV-------MSS 479 (576)
T ss_pred hHHHHHHHHhhHHHHhhhccccCCCCCcchhhcccccHHHHHHHHhhccCccccccccccccccc-CCcc-------ccc
Confidence 9999999999999999999999999888899999888 6666 88999777333333 4555554 4441 111
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCccC-------CCCCCCccccccCCCCchhhhHhhhhhhhhhccCCccchhHhHHHH
Q 009148 452 PMEEDATAATPLDNSDADHPSPSSVQI-------PPDSGSESRSKRDKGDSQAQKLSAILPQVWKDDLNSGKLLVSLFEL 524 (542)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (542)
..+..++..+.+..+.-|.|++++.-. ..+++++. .+...|-.++..+-+..++.|+++..++..|...-+.
T Consensus 480 ~~~~~~~~~v~~~~~~~g~p~~~t~p~~~~~~~~~~~~~~~~-~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~l~~~~~~ 558 (576)
T KOG2549|consen 480 AQSLTSTQQVSSPTEAPGSPSTSTGPVTSEVPSVVTESTSGP-KVVGPGKSRVVSLPSTGDGKGGATSHSRGVLPPASSP 558 (576)
T ss_pred cccccccceecCCCCCCCCCccCCCCcccCCCCcccccccCC-ccccCCCceeeecccccccccCCCCCCCCccccccCC
Confidence 111111111111111112222221111 13344444 4455557778888889999999999999999999999
Q ss_pred hhccccccCCCcccccCC
Q 009148 525 FGEGILSFIPAPEMSLFL 542 (542)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~ 542 (542)
.+.+..+|.++.+++.|.
T Consensus 559 a~~~~~~~~~~~q~~~~~ 576 (576)
T KOG2549|consen 559 APLSGSPACGSKQESVDS 576 (576)
T ss_pred CCCCccccccccccccCC
Confidence 999999999999998763
No 2
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5e-103 Score=784.48 Aligned_cols=389 Identities=43% Similarity=0.666 Sum_probs=357.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCCCCCc
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPL 82 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~pl 82 (542)
+|++|+||++|||+||+|+.||++++||.|+||||+||+|||.|||+||||+.||++||+.||+.+|+||||||....|+
T Consensus 5 ~ws~et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lNVePLyGyd~~r~l 84 (450)
T COG5095 5 LWSKETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLNVEPLYGYDPSRPL 84 (450)
T ss_pred eecHHHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcCCCcccCCCCCcch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred ceeec--CCCCceeeecCcccCHHHHhhccCCCCCCCCceeeeeeeeccccCCCCCCcccccccC---CCCCC-------
Q 009148 83 RFRRA--IGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAA---PSNGT------- 150 (542)
Q Consensus 83 ~F~~a--~g~~~lyy~eDkeVdL~~ii~a~LPk~P~~~s~~aHWLaIeGvQP~IPENp~~~~i~~---p~~~k------- 150 (542)
.|..+ .+++.+||++|+||||+++||+||||+|+.+++.+||||||||||+|||||......- ++...
T Consensus 85 ~fs~v~~g~gqsvYYlddEEvDfe~~in~PLPkVPr~~s~~sHWLAiEGVQPaIpqNP~l~d~~V~~~~~k~T~g~~~~a 164 (450)
T COG5095 85 QFSLVFRGLGQSVYYLDDEEVDFEEYINRPLPKVPRRVSIQSHWLAIEGVQPAIPQNPILLDKPVAKWASKDTLGVMPGA 164 (450)
T ss_pred hHHHHHccCCcceEecChhhcCHHHHhcCcCccCCcCcchhhhhhhhcccCccCCCCCCccccccccccccCccccCcCc
Confidence 99886 5668999999999999999999999999999999999999999999999997543210 11100
Q ss_pred -------CCCCCCCCcccccCcccccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhh
Q 009148 151 -------NNEQKDGLPVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVS 223 (542)
Q Consensus 151 -------~~~~~~~~~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~ 223 (542)
+++...+.++++||.+||+||||+|+||++||++++++++.+.+++||+||++|+|||||+|||++||+|+|+
T Consensus 165 ~t~a~q~~n~v~~~~n~E~KplvkHvLsKELq~YF~kvisal~dEs~~~~r~aAl~sLr~dsGlhQLvPYFi~f~~eqit 244 (450)
T COG5095 165 STAAYQARNGVTSMENAELKPLVKHVLSKELQMYFDKVISALLDESDEQTRDAALESLRNDSGLHQLVPYFIHFFNEQIT 244 (450)
T ss_pred chHHHHHhcCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHH
Confidence 0111345678999999999999999999999999999888899999999999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCC-ccHHHHHHHHHHHHHHHHHhCCCchh
Q 009148 224 RGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLAD-NHWELRDFTAKLVAAICKRYGHVYNT 302 (542)
Q Consensus 224 ~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~-~hw~LRd~AA~lL~~I~~k~~~~y~~ 302 (542)
+|++|+..|..+|.|+.||++|++||++||+||||||+|||+++|++|+.|.+ +|++|||+||.+|..+|++|+++|.+
T Consensus 245 ~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt 324 (450)
T COG5095 245 KNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT 324 (450)
T ss_pred HhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999988754 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHH
Q 009148 303 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQ 382 (542)
Q Consensus 303 L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~ 382 (542)
|+|||+||++|+|+|..|+.+|+|||+.||+-||.++||.+|.||+..|...+...++ ..|+....|+.+|.+++..
T Consensus 325 LkPRvtrTllKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle---~~~e~~~~e~n~~vd~l~d 401 (450)
T COG5095 325 LKPRVTRTLLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLE---KGNEEEIYENNRVVDLLKD 401 (450)
T ss_pred hchHHHHHHHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHh---ccchhhcccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888876554 2466778899999999999
Q ss_pred HHHHHHHHhhhc
Q 009148 383 AAGQCIYDRLKI 394 (542)
Q Consensus 383 a~g~~~~~~~~~ 394 (542)
|+=.+-.|-|+.
T Consensus 402 alliL~~d~Lpn 413 (450)
T COG5095 402 ALLILQSDGLPN 413 (450)
T ss_pred HHHHHhccCCCC
Confidence 976666665554
No 3
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=100.00 E-value=1.7e-96 Score=766.77 Aligned_cols=335 Identities=55% Similarity=0.940 Sum_probs=313.3
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCCCCCcce
Q 009148 5 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFASGGPLRF 84 (542)
Q Consensus 5 p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s~~pl~F 84 (542)
|+|+|+.|||++|+++++|||++.||+|+|||+++|+|+|+|||||+||++||++||+.||+++|+||+|||.++++++|
T Consensus 1 ~~~~i~~ia~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~~~~~~~~~ 80 (343)
T cd08050 1 PQESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGFSSSEPLPF 80 (343)
T ss_pred ChhHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCCCCCccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eec-CCCCceeeecCcccCHHHHhhccCCCCCCCCceeeeeeeeccccCCCCCCcccccccCCCC-----CCCCCCCCCC
Q 009148 85 RRA-IGYRDLFYLDDKDVEFKDVIEAPLPRAPLDTSIVCHWLAIEGVQPVIPENAPVQAIAAPSN-----GTNNEQKDGL 158 (542)
Q Consensus 85 ~~a-~g~~~lyy~eDkeVdL~~ii~a~LPk~P~~~s~~aHWLaIeGvQP~IPENp~~~~i~~p~~-----~k~~~~~~~~ 158 (542)
+.. .|++++||++|+||||++++++++|++|+++++++||||||||||.|||||++........ ..........
T Consensus 81 ~~~~~~~~~l~~~~D~eidl~~~i~~~lp~~p~~~~~~~hWLaieGvqP~ip~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (343)
T cd08050 81 RVSTGGGQELYYVEDKEIDLKDLINTPLPKVPLDVSVKAHWLAIEGVQPLIPENPPPSAIEVQKKESLANAAVKRLKKDE 160 (343)
T ss_pred eeccCCCceEeeCCCCcccHHHhhhcccCCCCCccccccccceecCccCCCCCCCCchhccccccccccccccccccccC
Confidence 554 5678999999999999999999999999999999999999999999999998765432211 1111123456
Q ss_pred cccccCcccccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCC-CHHHHHHHHH
Q 009148 159 PVEIKLPVKHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLN-NYSLLFALMR 237 (542)
Q Consensus 159 ~v~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~-nl~~L~~lmr 237 (542)
++.+||.++|+||+|||+||++||++|++.+ +..|++||++|++|||||||||||++||+++|++|++ |+..|.++|+
T Consensus 161 ~~~~k~~~~~~LS~Elq~yf~~It~a~~~~~-~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~ 239 (343)
T cd08050 161 QVLLKPLVRHVLSKELQLYFEEITEALVGSN-EEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMR 239 (343)
T ss_pred cceeeeccccccCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence 7889999999999999999999999999864 4688999999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCC-CCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009148 238 VVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL 316 (542)
Q Consensus 238 mv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 316 (542)
|++||++||+|+||+|+|||||++|||+|++++|.++ .++||+|||+||++|+.||++|+++|++|++||+++|+|+|+
T Consensus 240 ~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~ 319 (343)
T cd08050 240 MVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALL 319 (343)
T ss_pred HHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987 899999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhhHHHHHHhhCHHHH
Q 009148 317 DPKRALTQHYGAVQGLAALGPNVV 340 (542)
Q Consensus 317 Dp~ksl~t~YGAI~GL~aLG~~aV 340 (542)
||++++++|||||+||++||+++|
T Consensus 320 d~~~~~~~~YGAi~GL~~lG~~~v 343 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSALGPEAV 343 (343)
T ss_pred CCCCCcchhhHHHHHHHHhCccCC
Confidence 999999999999999999999875
No 4
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=99.96 E-value=2.3e-30 Score=223.38 Aligned_cols=91 Identities=62% Similarity=1.102 Sum_probs=88.5
Q ss_pred HHHHHhccccCCCCC-CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHH
Q 009148 261 VVTCLVAKRLGNRLA-DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNV 339 (542)
Q Consensus 261 vLTCll~k~l~~~~~-~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~a 339 (542)
||||+|+|++|.++. +|||+|||+||++|+.||++|+++|++||+||+++|+++|+||++|+++|||||+||.+||+++
T Consensus 1 vltClv~k~l~~~~~~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 1 VLTCLVGKQLGSRPPVDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred CeEEEeeccccCCCCCcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999886 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccChHHH
Q 009148 340 VRLLLLPNLGPY 351 (542)
Q Consensus 340 Vr~lilP~L~~y 351 (542)
||.+|+||++.|
T Consensus 81 vr~~ilP~l~~~ 92 (92)
T PF07571_consen 81 VRALILPNLKAY 92 (92)
T ss_pred HHHhhccCcCCC
Confidence 999999999876
No 5
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=99.91 E-value=7.8e-25 Score=177.96 Aligned_cols=66 Identities=64% Similarity=0.918 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
||.||+|+||.+|||+||++|+||+++.||+|||||||+|+|+|.|||+||||++||++|||+|||
T Consensus 1 ~s~~~~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 1 MSVFSQESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp -----HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred CCcCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999999999999999996
No 6
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.81 E-value=7.3e-20 Score=148.70 Aligned_cols=65 Identities=63% Similarity=0.906 Sum_probs=63.2
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+.+|+++|+++|+++|++++|+|++..|++++|||+++|+|+|+|||+|+||++||++||++||+
T Consensus 1 ~~~p~~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 1 SWLPKETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCCHHHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999999999999999999986
No 7
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=99.53 E-value=3.5e-14 Score=121.16 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=72.2
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccC
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGF 76 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy 76 (542)
..+|+.+|+++|+..|+.++|+++..++.+.++.++.+|+++|++|++|++|+|+|++||..||+..| .|+|||
T Consensus 12 ~gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g-~~~ygf 85 (85)
T cd00076 12 KGITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGY 85 (85)
T ss_pred ccCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCC-CCccCC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999 999998
No 8
>PLN00035 histone H4; Provisional
Probab=99.52 E-value=5e-14 Score=123.79 Aligned_cols=74 Identities=24% Similarity=0.335 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFA 77 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (542)
.||..+|+++|+..|+.++|+++..+|.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |||||.
T Consensus 29 ~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~-~lyGf~ 102 (103)
T PLN00035 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC-cCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999998 999996
No 9
>PTZ00015 histone H4; Provisional
Probab=99.48 E-value=1.4e-13 Score=121.02 Aligned_cols=73 Identities=23% Similarity=0.316 Sum_probs=71.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGF 76 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy 76 (542)
.||+.+|+++|+..|+.++|+++..++.+.+|.++.+|+++|++|++|++|+|+|++||..||+..+- |+|||
T Consensus 30 gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~-~~ygf 102 (102)
T PTZ00015 30 GITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR-TLYGF 102 (102)
T ss_pred CCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC-CCCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999998 99998
No 10
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=98.98 E-value=9.9e-10 Score=95.01 Aligned_cols=69 Identities=28% Similarity=0.402 Sum_probs=66.9
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-.||..+|++|+++.|..++|.+|...|++-+|..+.+|..+|..++.|+||+|++.+||..|++.++.
T Consensus 18 ~~Lp~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~ 86 (91)
T COG2036 18 LLLPKAPVRRILRKAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGR 86 (91)
T ss_pred hhcCchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999999999999999999999999999999875
No 11
>smart00417 H4 Histone H4.
Probab=98.98 E-value=1.1e-09 Score=91.48 Aligned_cols=62 Identities=21% Similarity=0.231 Sum_probs=59.6
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHH
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEA 64 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~A 64 (542)
-+|+.+|+++|+..|+.++|+++..++.+-+|.++.+|+.+|++|++|++|+|+|++||..|
T Consensus 13 gI~k~~IrRLaRr~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 13 GITKPAIRRLARRGGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 48999999999999999999999999999999999999999999999999999999999754
No 12
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.86 E-value=1.2e-08 Score=92.16 Aligned_cols=70 Identities=21% Similarity=0.347 Sum_probs=65.0
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCC
Q 009148 6 KETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 78 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (542)
.+.|.+|.++.|+++++++|...|.+.++....+|+++|..|++|++|++++.+||..|++.+.- |.|.+
T Consensus 4 ~~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~---~~f~~ 73 (117)
T cd07979 4 ARVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD---YSFTS 73 (117)
T ss_pred HHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---cCCCC
Confidence 35799999999999999999999999999999999999999999999999999999999999775 55554
No 13
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=98.43 E-value=1.2e-06 Score=73.47 Aligned_cols=64 Identities=25% Similarity=0.216 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-+|..|.+..|+++.++.|.+.|.+-++..+.++.+.+.++|.|++|++.+..||..||+..++
T Consensus 10 ~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 10 IAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 4688999999999999999999999999999999999999999999999999999999999887
No 14
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=98.28 E-value=1.9e-06 Score=71.05 Aligned_cols=65 Identities=32% Similarity=0.531 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGIS-----NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~-----~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..+|.+++++++-. +++.+|...|..-+||.+.+|+.+|..+++|+||++|++.||+.|++.
T Consensus 5 ~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~ 74 (75)
T PF00125_consen 5 LIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRI 74 (75)
T ss_dssp SSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHH
T ss_pred ccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhc
Confidence 36788888888888874 899999999999999999999999999999999999999999999985
No 15
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.19 E-value=7.7e-06 Score=66.06 Aligned_cols=63 Identities=29% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.||...|++|.+.. +..++|.|+...++...|..+..+.++|...+.+.+|++++.+||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 48999999999999 7888999999999999999999999999999999999999999999986
No 16
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=98.13 E-value=1.1e-05 Score=68.93 Aligned_cols=73 Identities=23% Similarity=0.349 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCC
Q 009148 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFA 77 (542)
Q Consensus 4 ~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (542)
+.+-+|+++|...|+.+++--..++...-....|+.++..|+.+..|+||+++|+.||-++|+..+. .+|||.
T Consensus 30 itKpaIRRlARr~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~-~~~g~~ 102 (103)
T KOG3467|consen 30 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR-TLYGFG 102 (103)
T ss_pred cchHHHHHHHHhcCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc-eeeccC
Confidence 4577899999999999999999999999999999999999999999999999999999999999986 588885
No 17
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.12 E-value=1.8e-05 Score=65.75 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 4 VPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 4 ~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+++..+..+.+++ +-.+++++|...|.+-+|..+.+++.+|.++++|.||+|++..||..||+.
T Consensus 2 ~~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r 66 (72)
T cd07981 2 LTKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER 66 (72)
T ss_pred CcHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667777777777 346899999999999999999999999999999999999999999999986
No 18
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=97.81 E-value=0.00012 Score=61.06 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-.|..++++.|++..++.+...|++-+..+++++.+.+.+++.|++|+..+..||..||+..|+
T Consensus 10 ~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 10 RSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred HHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 4678899999999999999999999999999999999999999999999999999999999887
No 19
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=97.70 E-value=0.00011 Score=66.40 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQS-IGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes-~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|.++.+. .+..+++++|+..|+.-+||...||++.|.+.+++.||+++|++||+.|++.
T Consensus 20 ~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n 85 (115)
T cd00074 20 QFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN 85 (115)
T ss_pred cCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence 5899999999997 8889999999999999999999999999999999999999999999999975
No 20
>smart00428 H3 Histone H3.
Probab=97.59 E-value=0.00028 Score=62.97 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGI---SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi---~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-|+.|++...- -+++++|..+|.+..|..+-++.++|..++.|+||.||++.|+..|.+.++.
T Consensus 38 LVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir~~ 103 (105)
T smart00428 38 LVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGE 103 (105)
T ss_pred HHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHhcc
Confidence 46777777631 2799999999999999999999999999999999999999999999988764
No 21
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=97.32 E-value=0.00088 Score=61.86 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
..|..|.+++||+...+.+...|.+-+--+..+|+++|.-|+.|++|+.++.+||..|+..+
T Consensus 16 ~~i~~iL~~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r 77 (129)
T PF02291_consen 16 RVIHLILKSMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSR 77 (129)
T ss_dssp HHHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence 46889999999999999999999999988999999999999999999999999999999976
No 22
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=97.18 E-value=0.0015 Score=55.19 Aligned_cols=59 Identities=22% Similarity=0.247 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGIS---NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~---~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+|..|+|..+.. ++++++..+|++-+=..+..+..|---|++|+||++++++||....|
T Consensus 10 ~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 10 TVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 467788887544 39999999999999999999999999999999999999999987664
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.67 E-value=0.0058 Score=53.67 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 311 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 311 (542)
|..+-.++.||-.. ++.|+..|+|+||.|+ .|++|.+|.+|...|..|++-+....-.--..|+..|
T Consensus 7 li~Laa~ai~l~~~----~~~~l~~Il~pVL~~~---------~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L 73 (97)
T PF12755_consen 7 LIGLAAVAIALGKD----ISKYLDEILPPVLKCF---------DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDAL 73 (97)
T ss_pred HHHHHHHHHHchHh----HHHHHHHHHHHHHHHc---------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665 9999999999999995 6889999999999999999988865544567788888
Q ss_pred HHHhcCCCCC
Q 009148 312 LNALLDPKRA 321 (542)
Q Consensus 312 ~k~llDp~ks 321 (542)
.|.+.|++.+
T Consensus 74 ~kl~~D~d~~ 83 (97)
T PF12755_consen 74 CKLSADPDEN 83 (97)
T ss_pred HHHHcCCchh
Confidence 9999988766
No 24
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.49 E-value=0.013 Score=54.88 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-|..|.+++||....+-+...|-+-.=-....|+++|.-|.+|+|+.++.++||..|+..+..
T Consensus 18 ~i~~iL~s~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~ 80 (148)
T KOG3334|consen 18 VIASILKSLGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVD 80 (148)
T ss_pred HHHHHHHHcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhc
Confidence 477889999999999999998888777788999999999999999999999999999998764
No 25
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=96.40 E-value=0.014 Score=55.24 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 3 IVPKETVEVIAQSIGI--SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi--~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
.||.+.|-+|-+..== ..+++||.+.+-+.|...|.-|.-||..-..+-||||++.+||-.|+..++.|
T Consensus 32 ~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 32 FLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred hccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 4799999999988632 24999999999999999999999999999999999999999999999998875
No 26
>PLN00160 histone H3; Provisional
Probab=96.40 E-value=0.012 Score=51.98 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=55.1
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIG--ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~G--i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-|+.|++... --+...+|..+|-+..|..|-.+.++|..++.|+||-||++.|+..|.+.++.
T Consensus 30 LVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 94 (97)
T PLN00160 30 LVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRGQ 94 (97)
T ss_pred HHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHhhcc
Confidence 3677777653 13688999999999999999999999999999999999999999999988763
No 27
>PTZ00018 histone H3; Provisional
Probab=96.32 E-value=0.011 Score=54.98 Aligned_cols=63 Identities=27% Similarity=0.441 Sum_probs=55.6
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 8 TVEVIAQSI--GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 8 ~Ik~iAes~--Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
-|+.|++.. ++ +...+|..+|-+..|..|-.+.+++..++.|+||-||+..|+..|.+.++.+
T Consensus 71 LVREI~~~~~~~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred HHHHHHHHcCCcc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 366677654 34 6889999999999999999999999999999999999999999999988753
No 28
>PLN00121 histone H3; Provisional
Probab=96.32 E-value=0.012 Score=54.88 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=55.2
Q ss_pred HHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSI--GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~--Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-|+.|+... ++ +...+|..+|-+..|..|-.+.++|..++.|+||-||+..|+..|.+.++.
T Consensus 71 LVREI~~~~~~~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~ 134 (136)
T PLN00121 71 LVREIAQDFKTDL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_pred HHHHHHHHhCccc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence 366777765 33 688999999999999999999999999999999999999999999988764
No 29
>PLN00161 histone H3; Provisional
Probab=96.23 E-value=0.021 Score=53.14 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=57.9
Q ss_pred HHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCC
Q 009148 8 TVEVIAQSIG--ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPV 73 (542)
Q Consensus 8 ~Ik~iAes~G--i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (542)
-|+.|+.... --+...+|..+|-+..|..|-++.++|..++.|+||-||...|+..|.+.++..+-
T Consensus 64 LVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~~ 131 (135)
T PLN00161 64 LVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIYG 131 (135)
T ss_pred HHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccccc
Confidence 4677777763 13788999999999999999999999999999999999999999999999987543
No 30
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=95.47 E-value=0.089 Score=45.37 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=60.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CccCHHHHHHHHHhc
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRR---TTLTTDDVDEALKLR 68 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR---~~Lt~~DI~~AL~~~ 68 (542)
-+++..||.+..++-=..++++++..++--....+-+|+++|.+.|.+... +-|.+.||..|.+.+
T Consensus 16 ~f~k~~iKr~~~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~rrl 84 (85)
T cd08048 16 SFPKAAIKRLIQSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYRRL 84 (85)
T ss_pred hccHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHHHh
Confidence 488999999998877789999999999999999999999999999999776 789999999999864
No 31
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=95.29 E-value=0.04 Score=60.05 Aligned_cols=58 Identities=22% Similarity=0.317 Sum_probs=47.8
Q ss_pred CCChHHHHHHHHHc------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHH
Q 009148 3 IVPKETVEVIAQSI------GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDD 60 (542)
Q Consensus 3 ~~p~e~Ik~iAes~------Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~D 60 (542)
-+|...||.+|... +-.+|+.++.++|-+..+.+..|+..+---|+.|+||||+..+|
T Consensus 351 ~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 351 SLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp -S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred CCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 37889999999888 45689999999999999999999999999999999999999887
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.29 E-value=0.17 Score=49.43 Aligned_cols=183 Identities=17% Similarity=0.148 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHhhhcCCcc---ccchhHHHHHH---HHhhccCCCH--HHHHHHHHHHHHhhcCCCCccccchhhHHHH
Q 009148 189 SDSVLFKQALVSLATDSGLH---PLVPYFTYFVA---DEVSRGLNNY--SLLFALMRVVWNLLQNPHIQIEPYLHQLMPS 260 (542)
Q Consensus 189 ~d~~~~~~AL~sL~tD~gL~---qLLPYfv~FI~---e~V~~nl~nl--~~L~~lmrmv~ALl~Np~L~LepYLHqLlPs 260 (542)
.|=..|.+||..|+.--.-+ ...+-|+..+. ..+...++|+ ......+.++..|..+-.-.+++|+..++|+
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 33345566776655432222 33344444443 4555566544 2333445556666555555699999999999
Q ss_pred HHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHH-HHHHHHHhcCCCCCchhhhhHHHHHHhh----
Q 009148 261 VVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRL-TKTLLNALLDPKRALTQHYGAVQGLAAL---- 335 (542)
Q Consensus 261 vLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI-~~tL~k~llDp~ksl~t~YGAI~GL~aL---- 335 (542)
++.++-.+ .=-+|+.|..+|..||..++ .-+++ ...+...+. +|+.....+++..|..+
T Consensus 99 Ll~~~~~~---------~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 99 LLKKLGDS---------KKFIREAANNALDAIIESCS-----YSPKILLEILSQGLK--SKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHGGG------------HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHccc---------cHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHc
Confidence 99876332 12689999999999999776 22355 444444443 56777777777665554
Q ss_pred C--HHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Q 009148 336 G--PNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRL 392 (542)
Q Consensus 336 G--~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~~~~ 392 (542)
| ...+... ..++.+.+.|...+.+ .+..+|..|.+++..+....|..-...+
T Consensus 163 ~~~~~~l~~~--~~~~~l~~~l~~~l~D---~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 163 GSDSSVLQKS--AFLKQLVKALVKLLSD---ADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp ----GGG--H--HHHHHHHHHHHHHHTS---S-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred cchHhhhccc--chHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 3 1111110 1135555566655544 4567899999999999888776654444
No 33
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=94.78 E-value=0.17 Score=41.93 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=48.8
Q ss_pred hHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 6 KETVEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+..+..+.++++-. .+++++...|.+-++..+..++..|.+.++|.|-.+|...||...|+.
T Consensus 2 K~~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 2 KRKLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 34556666666543 589999999999999999999999999999999999999999999874
No 34
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.67 E-value=0.085 Score=48.34 Aligned_cols=61 Identities=23% Similarity=0.435 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCH---HHHHHHHHhc
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTT---DDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~---~DI~~AL~~~ 68 (542)
-|-.|..|+||...++.+-..|-+..--.-.+++++|.-|+.|++|...++ +||..|+..+
T Consensus 19 lihliL~Slgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 19 LIHLILRSLGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred HHHHHHHhcCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 466789999999999999988888888888999999999999999985555 9999999764
No 35
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.54 E-value=0.08 Score=54.02 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=60.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh-cCCCCCccCCCCCCcceeec
Q 009148 16 IGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL-RNVEPVYGFASGGPLRFRRA 87 (542)
Q Consensus 16 ~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~-~nvEPLyGy~s~~pl~F~~a 87 (542)
.|-+.|++||.+.|.+..+..+..|+.-|.++++|.|..+|-+-||..+|+. .|++ +-||++.+.-.|+++
T Consensus 168 d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~-iPgf~sd~~~~~~k~ 239 (258)
T KOG1142|consen 168 DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNME-IPGFSSDEKRSKKKA 239 (258)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecccccc-CCCcccccccccccc
Confidence 4556799999999999999999999999999999999999999999999986 7774 567776554445554
No 36
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=94.32 E-value=0.14 Score=53.46 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=62.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC--CCccC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE--PVYGF 76 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE--PLyGy 76 (542)
-|..+..+.|+..+++-+.+.|.+-|.-.|++|.+++..+..|+||+..|..||...|...|+. -||-|
T Consensus 10 VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~ 80 (323)
T KOG4336|consen 10 VVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAY 80 (323)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHH
Confidence 3566788999999999999999999999999999999999999999999999999999998874 45554
No 37
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=93.79 E-value=0.27 Score=47.24 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=62.6
Q ss_pred CCChHHHHHHHHHcCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCC
Q 009148 3 IVPKETVEVIAQSIGIS---NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPV 73 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~---~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (542)
.+|.+.|.++++.+==+ .++.||..++++-..-.+.-+.--|-.|++..+|++++++||=.||+-.+.+-+
T Consensus 10 ~lP~AiI~rlvke~l~E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs~f 83 (172)
T KOG0870|consen 10 NLPNAIITRLVKEVLPESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFSSF 83 (172)
T ss_pred hccHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchHHH
Confidence 47999999888876332 489999999999999999999999999999999999999999999998875433
No 38
>smart00414 H2A Histone 2A.
Probab=93.64 E-value=0.2 Score=44.94 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIG-ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G-i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|.++-+.-. ..+++..++-.||.-+||...||++-|...++..|++++|+.||+.|++.
T Consensus 9 ~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~n 74 (106)
T smart00414 9 QFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRN 74 (106)
T ss_pred cCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccC
Confidence 467777777776643 55899999999999999999999999999999999999999999999854
No 39
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]
Probab=92.92 E-value=0.23 Score=52.69 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=62.3
Q ss_pred ChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 5 PKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 5 p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
-...|.-|.+++|...+.+-+.+.|...+...|.++...|-.|+.+++|.--..-||-.||..+...
T Consensus 31 a~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls~s 97 (353)
T KOG2389|consen 31 ARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLSAS 97 (353)
T ss_pred HHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhhhh
Confidence 3567899999999999999999999999999999999999999999999999999999999987764
No 40
>PLN00154 histone H2A; Provisional
Probab=92.83 E-value=0.34 Score=45.29 Aligned_cols=65 Identities=15% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIG--ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G--i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|.++.+.-. ..+++..+.-.||.-+||...||++-|...++..|++++|+.||..|++.
T Consensus 38 ~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIrn 104 (136)
T PLN00154 38 QFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
T ss_pred cCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhccC
Confidence 467788888888865 56999999999999999999999999999999999999999999999853
No 41
>smart00427 H2B Histone H2B.
Probab=92.57 E-value=0.68 Score=40.42 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 20 NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 20 ~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.+|..+...+..-|......|..||.++++..||++||..+|..|.+..
T Consensus 19 giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 19 GISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 3788888889999999999999999999999999999999999999873
No 42
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=2.2 Score=49.08 Aligned_cols=167 Identities=21% Similarity=0.296 Sum_probs=98.6
Q ss_pred HcCCCcHHHHH---HHHHHhhhcCCccccchhH---HHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCC--ccccchhh
Q 009148 185 AVSRSDSVLFK---QALVSLATDSGLHPLVPYF---TYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI--QIEPYLHQ 256 (542)
Q Consensus 185 ~l~~~d~~~~~---~AL~sL~tD~gL~qLLPYf---v~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L--~LepYLHq 256 (542)
+-+..+++.|+ .||.-| .+-...-|+|++ ++|+-......-.+ ...---.+-.|+..+|-+ -+.|||.+
T Consensus 223 lanD~~~eVRk~vC~alv~L-levr~dkl~phl~~IveyML~~tqd~dE~--VALEACEFwla~aeqpi~~~~L~p~l~k 299 (885)
T KOG2023|consen 223 LANDEDPEVRKNVCRALVFL-LEVRPDKLVPHLDNIVEYMLQRTQDVDEN--VALEACEFWLALAEQPICKEVLQPYLDK 299 (885)
T ss_pred HccCCCHHHHHHHHHHHHHH-HHhcHHhcccchHHHHHHHHHHccCcchh--HHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 33455566665 444322 222333444444 44443333222222 223345667789999933 67999999
Q ss_pred HHHHHHHHHhcccc-----CCC--------------C------------------CC----------ccHHHHHHHHHHH
Q 009148 257 LMPSVVTCLVAKRL-----GNR--------------L------------------AD----------NHWELRDFTAKLV 289 (542)
Q Consensus 257 LlPsvLTCll~k~l-----~~~--------------~------------------~~----------~hw~LRd~AA~lL 289 (542)
|+|.++.-++-... +++ | .+ ..|.||..+|..|
T Consensus 300 liPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaL 379 (885)
T KOG2023|consen 300 LIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAAL 379 (885)
T ss_pred HHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHH
Confidence 99999987765532 200 0 01 2499999999999
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 009148 290 AAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360 (542)
Q Consensus 290 ~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 360 (542)
.-+.+-|++ .+-+.++-.|...|.. .....+-.+|.+|.|+- +-.-..++|+|+.+...+-+-|.
T Consensus 380 DVLanvf~~---elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIA-EGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 380 DVLANVFGD---ELLPILLPLLKEHLSS--EEWKVREAGVLALGAIA-EGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred HHHHHhhHH---HHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHH-HHHhhhcccchHHHHHHHHHHhc
Confidence 999999995 6677777767676663 34444555555454442 23344578888877665554343
No 43
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=92.21 E-value=0.3 Score=44.48 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 2 SIVPKETVEVIAQ-SIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 2 s~~p~e~Ik~iAe-s~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+.+|.--|+++.+ --+-.+++.+++-.|+.-+||.+.||++-|...++--|.+++++-+++.|++
T Consensus 25 l~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAIr 90 (132)
T COG5262 25 LIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAIR 90 (132)
T ss_pred ccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHhc
Confidence 3578888999998 5566689999999999999999999999999999999999999999999984
No 44
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.88 E-value=0.33 Score=33.48 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHH
Q 009148 257 LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR 295 (542)
Q Consensus 257 LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 295 (542)
|+|.++.++ .|.+|..|+.|+..|+.|++.
T Consensus 1 llp~l~~~l---------~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLL---------NDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHH---------T-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHc---------CCCCHHHHHHHHHHHHHHHhh
Confidence 578777775 478999999999999999874
No 45
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=91.63 E-value=0.86 Score=39.84 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=49.2
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHHh
Q 009148 2 SIVPKETVEVIAQSIGI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRT-TLTTDDVDEALKL 67 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~-~Lt~~DI~~AL~~ 67 (542)
|-+++..||.+..++-= .++++.++..++--....+-|||++|...+..-... -|++.++..|.+.
T Consensus 22 s~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~rr 89 (90)
T PF04719_consen 22 SSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYRR 89 (90)
T ss_dssp ----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHh
Confidence 45889999998887644 689999999999999999999999999999965543 7999999999874
No 46
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=91.42 E-value=0.5 Score=43.60 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 3 IVPKETVEVIAQS-IGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 3 ~~p~e~Ik~iAes-~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.+|.--|.++.+. =.+.+++.++.-.||.-+||-..||++-|-++++-.+++++++.+|+.|++
T Consensus 27 ~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 27 QFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred ccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 4677777777776 556789999999999999999999999999999999999999999999985
No 47
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.24 E-value=7.3 Score=42.25 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=104.5
Q ss_pred HHHHHhhhcCC-ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcC----C-CCccccchhh-HHHHHHHHHhcc
Q 009148 196 QALVSLATDSG-LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN----P-HIQIEPYLHQ-LMPSVVTCLVAK 268 (542)
Q Consensus 196 ~AL~sL~tD~g-L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~N----p-~L~LepYLHq-LlPsvLTCll~k 268 (542)
+||..+.+++. +..++|+++.-+.......- +......+++.+..++.+ . +...+-|.|. ++|.++..++..
T Consensus 24 ~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~ 102 (415)
T PF12460_consen 24 EALAALSTSPQILETLSIRLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQA 102 (415)
T ss_pred HHHHHHHCChhHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhh
Confidence 45556666655 44556655555544333222 444444444444444443 3 6677899997 888888777766
Q ss_pred ccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc----------CCCCCchhhhhHHHHHHhhCHH
Q 009148 269 RLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL----------DPKRALTQHYGAVQGLAALGPN 338 (542)
Q Consensus 269 ~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll----------Dp~ksl~t~YGAI~GL~aLG~~ 338 (542)
...... .++.+=+.+++++..|++..+ ..-|..+...+...|+ +...........+.-+.++=.-
T Consensus 103 ~~~~~~--~~~~~L~~~~~l~~~iv~~l~---~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~ 177 (415)
T PF12460_consen 103 SDQSSD--LDDRVLELLSRLINLIVRSLS---PEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCS 177 (415)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHc
Confidence 544322 567888999999999999987 5788888888888887 1111001112222222222111
Q ss_pred HHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHH
Q 009148 339 VVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 339 aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a 383 (542)
.=+.+.+|....+.+.+-...... .+...|.-+.++..+|++=
T Consensus 178 l~~~~~~~~~~~ll~~l~~~~~~~--~~~~~~~~~~~~la~LvNK 220 (415)
T PF12460_consen 178 LRKDVSLPDLEELLQSLLNLALSS--EDEFSRLAALQLLASLVNK 220 (415)
T ss_pred CCcccCccCHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHcC
Confidence 234456677777776665443322 2244666677777777654
No 48
>PTZ00017 histone H2A; Provisional
Probab=91.13 E-value=0.5 Score=44.15 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=55.5
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.+|..-|.++.+.- -..+++..+.-.||.-+||...||++-|...++..|++++|+.||..|++
T Consensus 27 ~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 27 QFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred ccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 35666677776553 34589999999999999999999999999999999999999999999985
No 49
>PTZ00463 histone H2B; Provisional
Probab=90.87 E-value=0.79 Score=41.77 Aligned_cols=48 Identities=21% Similarity=0.299 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 21 FSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 21 Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
+|..+...+...|......|..||.++++..+|.|||..||..|.+++
T Consensus 47 IS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 47 ISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 688888899999999999999999999999999999999999999874
No 50
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.43 E-value=0.17 Score=38.77 Aligned_cols=55 Identities=16% Similarity=0.148 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 279 WELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 279 w~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
|.+|.-|+..|+.++...+.......+.++..|...|.|++. ...-.|..+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~--~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD--SVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH--HHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHhcC
Confidence 899999999999988777777777888999999999988665 6788888887654
No 51
>PLN00158 histone H2B; Provisional
Probab=90.34 E-value=0.92 Score=41.35 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 9 VEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 9 Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
|..+.+++-=. .+|..+...+..-|......|..||.++++..+|.+||..||..|.++.
T Consensus 33 I~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 33 IYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 34444443221 3688888889999999999999999999999999999999999999874
No 52
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.57 E-value=8.4 Score=46.71 Aligned_cols=256 Identities=14% Similarity=0.172 Sum_probs=145.3
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHH--HHHHHHHHHHHhhcCCCCcccc
Q 009148 175 QLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYS--LLFALMRVVWNLLQNPHIQIEP 252 (542)
Q Consensus 175 Q~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~--~L~~lmrmv~ALl~Np~L~Lep 252 (542)
+..|+.+...++..++. .|++|=+.|++..+=++++|-|.+..+..=.-..+.+. .+++++ .. .=+.|. ..
T Consensus 3 ~~~l~qLl~~l~spDn~-vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~---~~--~w~~l~-~e 75 (1075)
T KOG2171|consen 3 SAPLEQLLQQLLSPDNE-VRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLL---TK--HWSRLS-AE 75 (1075)
T ss_pred hhHHHHHHHHhcCCCch-HHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHH---HH--HhhcCC-HH
Confidence 34566666677777664 58888888888888888999998766532222222111 111111 11 001111 12
Q ss_pred chhhHHHHHHHHHhccc-------cC-------CCCC----------------CccHHHHHHHHHHHHHHHHHhCCCchh
Q 009148 253 YLHQLMPSVVTCLVAKR-------LG-------NRLA----------------DNHWELRDFTAKLVAAICKRYGHVYNT 302 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~-------l~-------~~~~----------------~~hw~LRd~AA~lL~~I~~k~~~~y~~ 302 (542)
--.+|-.++|.|++.-. +| .+.. ..+-.+|+-|=.+|..+-..||+....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~ 155 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQP 155 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccch
Confidence 23456666777765432 11 1111 123479999999999999999998776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH-----HHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHH
Q 009148 303 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP-----NVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVY 377 (542)
Q Consensus 303 L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~-----~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~ 377 (542)
.-.-+.+.|.+.+.||..+ .+.-|+.++.++-. .+.+...-+-||..+..+......+... .-.++..+.
T Consensus 156 ~~~~l~~lf~q~~~d~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~---~a~~~l~~l 230 (1075)
T KOG2171|consen 156 HLDDLLRLFSQTMTDPSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD---AAKSALEAL 230 (1075)
T ss_pred hHHHHHHHHHHhccCCcch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchH---HHHHHHHHH
Confidence 6668899999999999988 55566666666532 3344444555555555555544332111 123455555
Q ss_pred HHHHHHHHHHHHHhhhcCCCC-----CCCCcchhhcccCc--ccc----cCccccCCccccCC--CccccccccCCCC
Q 009148 378 GALLQAAGQCIYDRLKIFPPL-----SSLPARSVWKTNGI--VAT----LSNKRKTSMDLEEQ--PPLKKIATDGPVD 442 (542)
Q Consensus 378 gaLl~a~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 442 (542)
.=|+...+.++.+.+...-.+ ..-..---||...- +++ -|.++|.+.+-.-+ |.+=++.||+..+
T Consensus 231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D 308 (1075)
T KOG2171|consen 231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD 308 (1075)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc
Confidence 556666666666555432111 00011111221110 111 56777887774444 7778888888754
No 53
>PLN00157 histone H2A; Provisional
Probab=89.33 E-value=0.73 Score=42.95 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 4 VPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 4 ~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+|..-|.+..+.- -..+++..|.-.||.-+||...||++-|..-++..|++++++.||..|++
T Consensus 27 FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 27 FPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred cchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 5555666666552 24578889999999999999999999999999999999999999999985
No 54
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=89.23 E-value=13 Score=42.31 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCCcH-HHH--HHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCcccc
Q 009148 176 LYFDKITELAVSRSDS-VLF--KQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEP 252 (542)
Q Consensus 176 ~Yf~kIt~a~l~~~d~-~~~--~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Lep 252 (542)
.+|.+.+.-+++.... .+. .-++..+-++.++..+-|+-+-=--..-..+.++...-...+-...++..|=+-.-||
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EP 212 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEP 212 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCc
Confidence 3555555555553322 122 3567899999999999998532111122223333222224566677888888889999
Q ss_pred chhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009148 253 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGL 332 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL 332 (542)
|+-.++|.+++|.=. ..=.+|+-|...+..|.+.+.. ..++-.+...+...+.+ .+.+.=+++.+|
T Consensus 213 yiv~~lp~il~~~~d---------~~~~Vr~Aa~~a~kai~~~~~~--~aVK~llpsll~~l~~~---kWrtK~aslell 278 (569)
T KOG1242|consen 213 YIVPILPSILTNFGD---------KINKVREAAVEAAKAIMRCLSA--YAVKLLLPSLLGSLLEA---KWRTKMASLELL 278 (569)
T ss_pred hHHhhHHHHHHHhhc---------cchhhhHHHHHHHHHHHHhcCc--chhhHhhhhhHHHHHHH---hhhhHHHHHHHH
Confidence 999999999999622 2237899999998888888763 35665555555444432 677888888888
Q ss_pred HhhCH
Q 009148 333 AALGP 337 (542)
Q Consensus 333 ~aLG~ 337 (542)
.+|+.
T Consensus 279 g~m~~ 283 (569)
T KOG1242|consen 279 GAMAD 283 (569)
T ss_pred HHHHH
Confidence 88765
No 55
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=88.45 E-value=18 Score=41.25 Aligned_cols=205 Identities=19% Similarity=0.184 Sum_probs=123.8
Q ss_pred cccHHHHHHHHHHHHHHcCCCcHHHHH---HHHHHhhhcCCccccchhHHHHHHHHhhccCCCH-HHHHHHHHHHHHhhc
Q 009148 169 ILSRELQLYFDKITELAVSRSDSVLFK---QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNY-SLLFALMRVVWNLLQ 244 (542)
Q Consensus 169 ~LSkElQ~Yf~kIt~a~l~~~d~~~~~---~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl-~~L~~lmrmv~ALl~ 244 (542)
..+.+...||..+.+++-+......|+ -|++.+...-| ..-=||++.++-.-++.--+.. ..-......++|++.
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 345666789999999987665443332 23456666666 5666777777655443321111 111223344444443
Q ss_pred C--------------------------------------CCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHH
Q 009148 245 N--------------------------------------PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 286 (542)
Q Consensus 245 N--------------------------------------p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 286 (542)
. -...++.++..++|.+... ..|.|=.+|.-+-
T Consensus 246 ~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev---------l~DT~~evr~a~~ 316 (569)
T KOG1242|consen 246 CLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV---------LWDTKPEVRKAGI 316 (569)
T ss_pred hcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH---------HccCCHHHHHHHH
Confidence 3 2222333333333322211 1366889999999
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC-------------------------------------CchhhhhHH
Q 009148 287 KLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR-------------------------------------ALTQHYGAV 329 (542)
Q Consensus 287 ~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~k-------------------------------------sl~t~YGAI 329 (542)
.+|-.+|..-.+. . -.++..+|+.++.||.+ +-.++=+++
T Consensus 317 ~~l~~~~svidN~--d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~ 393 (569)
T KOG1242|consen 317 ETLLKFGSVIDNP--D-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTA 393 (569)
T ss_pred HHHHHHHHhhccH--H-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHH
Confidence 9999999887753 3 45788899999999983 222333444
Q ss_pred HHHHhhCHHH-HHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 009148 330 QGLAALGPNV-VRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIY 389 (542)
Q Consensus 330 ~GL~aLG~~a-Vr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~ 389 (542)
.-+-.|-..+ =...+-|+|+.+...|+..+.+. ...+|..+.|.+|.++..+|.--.
T Consensus 394 ~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~---~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 394 IIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA---VPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred HHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhhcc
Confidence 4333333333 24456788888888777766542 356999999999999999887653
No 56
>PLN00156 histone H2AX; Provisional
Probab=88.31 E-value=1.2 Score=41.92 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 4 VPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 4 ~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+|.--|.+..+.- -..+++..+.-.||.-+||...||++-|..-++..|++++++.+|..|++
T Consensus 30 FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 30 FPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred cchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 5555566666542 24478999999999999999999999999999999999999999999985
No 57
>PLN00153 histone H2A; Provisional
Probab=88.27 E-value=1 Score=41.78 Aligned_cols=63 Identities=16% Similarity=0.256 Sum_probs=52.4
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 4 VPKETVEVIAQS-IGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 4 ~p~e~Ik~iAes-~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+|.--|.+..+. --..+++..+.-.||.-+||...||++-|..-++..|++++++.+|..|++
T Consensus 25 FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 25 FPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred cchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 454455555543 223478889999999999999999999999999999999999999999985
No 58
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=87.56 E-value=0.33 Score=45.35 Aligned_cols=50 Identities=24% Similarity=0.430 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 20 NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 20 ~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
+....|..+|-|.+|..|-.+.+++..++.|+||-|+.+.||..|.+.++
T Consensus 85 rfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg 134 (137)
T KOG1745|consen 85 RFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 134 (137)
T ss_pred eehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhccc
Confidence 35668999999999999999999999999999999999999999998876
No 59
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=87.45 E-value=9 Score=45.95 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=83.9
Q ss_pred ccccchhHHHHHHHHhhccCC-----CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHH
Q 009148 207 LHPLVPYFTYFVADEVSRGLN-----NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWEL 281 (542)
Q Consensus 207 L~qLLPYfv~FI~e~V~~nl~-----nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 281 (542)
+|+++|-++.-+.-.|..+.- -+-.+..+.++++-|-.|-.+.-.||+|.++-..+.-+-+ .+..-+.
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a-------~d~DqeV 586 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA-------TDSDQEV 586 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc-------ccccHHH
Confidence 666776666666656655432 2455666788888888888999999999766544443322 3556799
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 282 RDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 282 Rd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
|+.|-.++++++-.||....+=-+|+.-.|.+-+. .-.|..-|+.+|.-+
T Consensus 587 keraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~----nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 587 KERAISCMGQIIANFGDFLGNELPRTLPILLERLG----NEITRLTAVKALTLI 636 (1233)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh----chhHHHHHHHHHHHH
Confidence 99999999999999998777777777777777765 344555566665554
No 60
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=87.20 E-value=0.72 Score=40.30 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 19 SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 19 ~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+-.+|.+..+-+-|...+.+++++|.+.+.+.+|++++++|+-.++|-
T Consensus 18 ~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 18 EEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 4567789999999999999999999999999999999999999999874
No 61
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=86.00 E-value=2.7 Score=41.68 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------ccCHHHHHHHHHhcC
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRT------TLTTDDVDEALKLRN 69 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~------~Lt~~DI~~AL~~~n 69 (542)
..|..|+..-|+..+++|+...|+..+|.||+.|++..+...+|-... ....+|+...|+.+|
T Consensus 52 ~~~~~i~~~~g~~~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~~~~~~~~r~~~~sdvr~qL~~l~ 120 (212)
T cd08045 52 KKIRKIAKKHGLKEVDEDVLDLISLALEERLRNLLEKLIEVSEHRVDSEKEDERYEITSDVRKQLRFLE 120 (212)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCceeecchHHHHHHHHH
Confidence 568899999999999999999999999999999999999999998543 344555555555444
No 62
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=85.98 E-value=0.69 Score=47.33 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=33.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------CHHHHHHHHHhcCC
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTL------TTDDVDEALKLRNV 70 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~L------t~~DI~~AL~~~nv 70 (542)
..|..|+...|+..+++|+...|+..+|.|||.||..++..++|-.+.-- ..+||...|+.++.
T Consensus 51 ~~i~~i~~~~g~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~~~~~~~~~~~sdv~~qlr~l~~ 120 (264)
T PF05236_consen 51 KRIQKIAKKHGLKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDSSKSDPRYEIRSDVRKQLRFLEQ 120 (264)
T ss_dssp HHHHHHHHCTT--EE-TCHHHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccchHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999876532 36677777765443
No 63
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=85.17 E-value=5.3 Score=37.98 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 3 IVPKETVEVIAQSIGI--SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi--~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-||+++|.-|.+.+== -++..|+-..|-..--+.|.-|-.+|-+.+....++|+..++|-.||+.++.
T Consensus 12 sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF 81 (156)
T KOG0871|consen 12 SLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGF 81 (156)
T ss_pred cCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcch
Confidence 3899999888776522 2577899888888888999999999999999999999999999999998863
No 64
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=83.93 E-value=4.5 Score=35.43 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=48.4
Q ss_pred HHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
|+.+.=..|=. +-.+|.+..|-+-|...+.+++.+|..++. ++|.+++++|+-.++|-
T Consensus 8 i~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~ 66 (92)
T cd07978 8 IRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRK 66 (92)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhc
Confidence 55555555654 456688899999999999999999999999 88889999999999963
No 65
>PTZ00252 histone H2A; Provisional
Probab=83.88 E-value=3.2 Score=38.86 Aligned_cols=63 Identities=19% Similarity=0.278 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHH
Q 009148 4 VPKETVEVIAQSIG-ISNFSTDAALALAPDVEYRIREIMQEAIKCMRH--SRRTTLTTDDVDEALK 66 (542)
Q Consensus 4 ~p~e~Ik~iAes~G-i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrh--skR~~Lt~~DI~~AL~ 66 (542)
+|.--|.+....-. ..+++..+.-.||.-+||-..||++-|.+-++. .|++++++.+|..|++
T Consensus 26 FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 26 FPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred CchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 45555555554433 347899999999999999999999999999976 6889999999999985
No 66
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=83.62 E-value=3.1 Score=43.09 Aligned_cols=60 Identities=25% Similarity=0.324 Sum_probs=54.4
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHH
Q 009148 6 KETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRH--SRRTTLTTDDVDEALK 66 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrh--skR~~Lt~~DI~~AL~ 66 (542)
...|+..|+..|++ ++.++++.|++.+..-+..+.+|.-|+.-. .++.++|.+||+..+.
T Consensus 136 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~ 197 (326)
T PRK07452 136 KQLVERTAQELGVK-LTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVS 197 (326)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhc
Confidence 36789999999995 999999999999999999999999999988 5688999999998763
No 67
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.72 E-value=7.5 Score=37.68 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCccCHHHHHHHHHhc
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSR--------------RTTLTTDDVDEALKLR 68 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk--------------R~~Lt~~DI~~AL~~~ 68 (542)
.||-+-+.-+.++.|+.-.+..+.+.++-.....+..|+++|..+.|-.. +-+||.+|+..||+..
T Consensus 86 ~IPDavt~~yL~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL~Ey 165 (176)
T KOG3423|consen 86 TIPDAVTDHYLKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPALAEY 165 (176)
T ss_pred CCcHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHHHHh
Confidence 46777788899999998888899999999999999999999999877433 2379999999999986
Q ss_pred CC
Q 009148 69 NV 70 (542)
Q Consensus 69 nv 70 (542)
++
T Consensus 166 Gi 167 (176)
T KOG3423|consen 166 GI 167 (176)
T ss_pred Cc
Confidence 65
No 68
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=81.89 E-value=12 Score=40.60 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhhcC----CCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhC-CCchhHH
Q 009148 230 SLLFALMRVVWNLLQN----PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG-HVYNTLQ 304 (542)
Q Consensus 230 ~~L~~lmrmv~ALl~N----p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~-~~y~~L~ 304 (542)
+.+..++.++.-|+.. +.=.+..-+..++|++|.|++-- +++-..|..|-.++..|.+.+. .+....+
T Consensus 226 p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v-------~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~ 298 (373)
T PF14911_consen 226 PRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV-------NEEPQVKKLATELLQYMVESCQVGSSGEPR 298 (373)
T ss_pred CcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc-------CCCcchhHHHHHHHHHHHHcccccCcchHH
Confidence 3455556666666666 34444555667889999998643 3466789999999999998877 5555666
Q ss_pred HHHHHHHHHHhcCC-CCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhH
Q 009148 305 TRLTKTLLNALLDP-KRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEP 357 (542)
Q Consensus 305 ~RI~~tL~k~llDp-~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~ 357 (542)
..++..+.....+- .-.=...|+-+.-++.+-++.|.. ++|.+..-...-|.
T Consensus 299 ~~l~s~lrsfvqk~l~~~t~~~f~~l~~vA~l~p~lV~~-Lip~i~q~l~~~E~ 351 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLAHYTYQYFQFLEKVAELDPQLVIS-LIPTIRQSLKDSER 351 (373)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCHHHHHH-HHHHHHHHHHHHHH
Confidence 65555554333221 122334578889999999999998 68888877765554
No 69
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=80.71 E-value=4.8 Score=41.56 Aligned_cols=60 Identities=23% Similarity=0.199 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
..|+..+++.|+ ++++++++.|++.+...+..+.+|.-|+.--++-+++|.+||+..+-.
T Consensus 153 ~~i~~~~~~~g~-~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~ 212 (340)
T PRK05574 153 QWIQQRLKQQGL-QIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD 212 (340)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh
Confidence 568889999999 599999999999999999999999999987764334999999988753
No 70
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=80.65 E-value=5 Score=40.61 Aligned_cols=60 Identities=27% Similarity=0.261 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
..|+..++..|+ +++++++..|++.+..-++.+.+|.-|+.--++-+.+|.+||+..+..
T Consensus 118 ~~i~~~~~~~g~-~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 118 RWIQARLKKLGL-RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 368888999999 599999999999999999999999999988776668999999988743
No 71
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=80.39 E-value=2.1 Score=35.87 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cCHHHHHHHHH
Q 009148 5 PKETVEVIAQSIGI----SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTT-LTTDDVDEALK 66 (542)
Q Consensus 5 p~e~Ik~iAes~Gi----~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~-Lt~~DI~~AL~ 66 (542)
|+++|.++-. ... ++++.++....++.++-.++|.+..|..-++..+... +..+|++..+-
T Consensus 1 p~~li~rll~-~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~p 66 (72)
T PF09415_consen 1 PPELIARLLH-EHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILP 66 (72)
T ss_dssp -CHHHHHHHC-TTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCH
T ss_pred ChHHHHHHHH-HHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6778888877 444 4688999999999999999999999999999999988 99999998653
No 72
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=80.33 E-value=4.4 Score=42.41 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSR-RTTLTTDDVDEALK 66 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk-R~~Lt~~DI~~AL~ 66 (542)
..|+..|+..|++ ++++|++.|++.++.-+..+.+|--|+.--++ .+++|.+||+..+-
T Consensus 149 ~~i~~~~~~~g~~-i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~ 208 (343)
T PRK06585 149 RLIDDELAEAGLR-ITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVG 208 (343)
T ss_pred HHHHHHHHHCCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Confidence 5689999999995 99999999999999999999999999988754 46899999988763
No 73
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=80.11 E-value=4.8 Score=42.39 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
..|+..+++.|+ +++++|++.|++.++..+..+.+|--|+.--+.-+.+|.+||+.++-
T Consensus 147 ~~i~~~~~~~~l-~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~ 205 (334)
T COG1466 147 QWIKKRAKELGL-KIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVS 205 (334)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHh
Confidence 578999999999 59999999999999999999999999999999888999999999873
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.59 E-value=9.2 Score=43.51 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=89.2
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhH
Q 009148 178 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 257 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqL 257 (542)
.+++++-++...+....++.++-|.+| |+. .-..|.+. .-|+-+.-++.||-.+. .+|+.++
T Consensus 24 lEk~Vk~l~~~~~~~~i~k~I~~L~~d------------~a~-s~~~n~rk-GgLiGlAA~~iaLg~~~----~~Y~~~i 85 (675)
T KOG0212|consen 24 LEKLVKDLVNNNDYDQIRKVISELAGD------------YAY-SPHANMRK-GGLIGLAAVAIALGIKD----AGYLEKI 85 (675)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHH------------hcc-Cccccccc-chHHHHHHHHHHhcccc----HHHHHHh
Confidence 355566666666655556666656554 111 11122222 45666666666665443 3499999
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 258 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 258 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
+|++++|. .|..-.+|-||-.-|-.|++-+......--.-|...+.|...|+..+ +.|-++|..
T Consensus 86 v~Pv~~cf---------~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~-------V~~~aeLLd 149 (675)
T KOG0212|consen 86 VPPVLNCF---------SDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN-------VRGGAELLD 149 (675)
T ss_pred hHHHHHhc---------cCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc-------cccHHHHHH
Confidence 99999995 24455889999999999999999888888899999999999987654 334445555
Q ss_pred HHHHHhhcc
Q 009148 338 NVVRLLLLP 346 (542)
Q Consensus 338 ~aVr~lilP 346 (542)
.-+...+.+
T Consensus 150 RLikdIVte 158 (675)
T KOG0212|consen 150 RLIKDIVTE 158 (675)
T ss_pred HHHHHhccc
Confidence 444444443
No 75
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.94 E-value=8.8 Score=32.40 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=59.5
Q ss_pred cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchh-hHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 210 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLH-QLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 210 LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLH-qLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
++|+++.++.+. +.......+..+..+..+..-....++. ..+|.++.++- +++..+|..|..+
T Consensus 8 ~i~~l~~~l~~~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------~~~~~v~~~a~~~ 72 (120)
T cd00020 8 GLPALVSLLSSS------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK---------SEDEEVVKAALWA 72 (120)
T ss_pred ChHHHHHHHHcC------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh---------CCCHHHHHHHHHH
Confidence 667777776543 2456666777777888774333334443 78888888762 2457999999999
Q ss_pred HHHHHHHhCCCchh-HHHHHHHHHHHHhcCC
Q 009148 289 VAAICKRYGHVYNT-LQTRLTKTLLNALLDP 318 (542)
Q Consensus 289 L~~I~~k~~~~y~~-L~~RI~~tL~k~llDp 318 (542)
|..|+......-.. .+.-++..+.+.+.++
T Consensus 73 L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~ 103 (120)
T cd00020 73 LRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS 103 (120)
T ss_pred HHHHccCcHHHHHHHHHCCChHHHHHHHhcC
Confidence 99998754321111 1122566666766654
No 76
>PRK07914 hypothetical protein; Reviewed
Probab=77.28 E-value=5.5 Score=41.58 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=51.5
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 6 KETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
..+|+..|++.|++ ++.+|++.|++-++.-+..+.+|.-|..-..+ ..+|.+||+..+.
T Consensus 134 ~~wi~~~a~~~g~~-i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~ 192 (320)
T PRK07914 134 ADFVRKEFRSLRVK-VDDDTVTALLDAVGSDLRELASACSQLVADTG-GAVDAAAVRRYHS 192 (320)
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcC
Confidence 45799999999996 99999999999999999999999999875544 6799999988763
No 77
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.57 E-value=14 Score=43.00 Aligned_cols=194 Identities=20% Similarity=0.221 Sum_probs=122.0
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCC
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLA 275 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~ 275 (542)
+||.-|++== =++++|-+.-++-+...+ .++..-..-+-.+-|+..-=.=.+-|||..|+|-++.|+-.|.---| .
T Consensus 377 AaLDVLanvf-~~elL~~l~PlLk~~L~~--~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR-s 452 (885)
T KOG2023|consen 377 AALDVLANVF-GDELLPILLPLLKEHLSS--EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR-S 452 (885)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHcCc--chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee-e
Confidence 5555554422 257888888888777766 34433333333333444333336778999999999999877642111 2
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 355 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 355 (542)
-..|.|-+||--++..= .+.-+++ ++.-|++.++|.+| -.+-.|..+++-|-.+|-.. ++|++..++..|
T Consensus 453 ITCWTLsRys~wv~~~~------~~~~f~p-vL~~ll~~llD~NK--~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l 522 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDS------RDEYFKP-VLEGLLRRLLDSNK--KVQEAACSAFATLEEEAGEE-LVPYLEYILDQL 522 (885)
T ss_pred eeeeeHhhhhhhHhcCC------hHhhhHH-HHHHHHHHHhcccH--HHHHHHHHHHHHHHHhccch-hHHHHHHHHHHH
Confidence 45799998887765543 2222443 44556677776554 45567777888888888777 689999999999
Q ss_pred hHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcchhhc
Q 009148 356 EPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPLSSLPARSVWK 408 (542)
Q Consensus 356 e~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~~~~~~~~~~~~~~~~~~~~ 408 (542)
.........+|-..-+|| .|.|-..||.-+++.-= --...||.-.-|.
T Consensus 523 ~~af~kYQ~KNLlILYDA---IgtlAdsvg~~Ln~~~Y--iqiLmPPLi~KW~ 570 (885)
T KOG2023|consen 523 VFAFGKYQKKNLLILYDA---IGTLADSVGHALNKPAY--IQILMPPLIEKWE 570 (885)
T ss_pred HHHHHHHhhcceehHHHH---HHHHHHHHHHhcCcHHH--HHHhccHHHHHHH
Confidence 888877755555444444 24555566655655431 1235678777775
No 78
>PRK05629 hypothetical protein; Validated
Probab=76.15 E-value=7.4 Score=40.51 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.+|+..|++.|.+ ++.+|++.|++.+..-+..+-+|--|..-.. ..++|.+||+..+
T Consensus 133 ~wi~~~~~~~g~~-i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v 189 (318)
T PRK05629 133 GWVTQEFKNHGVR-PTPDVVHALLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYY 189 (318)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHh
Confidence 5799999999996 9999999999999999999999999987665 4579999998765
No 79
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=75.95 E-value=8.1 Score=40.50 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=51.9
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 6 KETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
..+|+..|+..|++ ++++|+..|++-+..-+..+.+|--|+.--++ ++|.+||+...
T Consensus 141 ~~~i~~~~~~~g~~-i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v 197 (328)
T PRK08487 141 LELLQERAKELGLD-IDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELV 197 (328)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHh
Confidence 35799999999996 99999999999999999999999999988865 79999999876
No 80
>PRK05907 hypothetical protein; Provisional
Probab=75.86 E-value=6.4 Score=41.45 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hCCCccCHHHHHHHHH
Q 009148 6 KETVEVIAQSIGISNFSTDAALALAPDV-EYRIREIMQEAIKCMRH-SRRTTLTTDDVDEALK 66 (542)
Q Consensus 6 ~e~Ik~iAes~Gi~~Lsdeaa~~La~dV-EyrlreIiqeA~kfmrh-skR~~Lt~~DI~~AL~ 66 (542)
..+|...++..|.+ ++.+|++.|.+.+ +.-+..+.+|--|.+-. +.++++|.+||+...-
T Consensus 140 ~~Wi~~~~~~~g~~-i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~ 201 (311)
T PRK05907 140 AQLLIQRAKELGIS-CSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVV 201 (311)
T ss_pred HHHHHHHHHHcCCC-cCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhc
Confidence 46899999999995 9999999999999 69999999999999998 5688999999998763
No 81
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=75.62 E-value=10 Score=42.68 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVE-----------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVE-----------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
.|..+++.-|+..++.+|...|.+... ..|.++++||.-+++..+++.++.+||+.|++.+.
T Consensus 435 ~i~~~~~~~~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r~ 507 (509)
T PF13654_consen 435 FIASICQKEGLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEERR 507 (509)
T ss_dssp HHHHHHHHHSS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH--
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHccc
Confidence 577888999999999999887777654 36889999999999999999999999999998753
No 82
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=75.17 E-value=4.3 Score=40.16 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=62.0
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CccCHHHHHHHHHhcCCC
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRR-TTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR-~~Lt~~DI~~AL~~~nvE 71 (542)
|.+|+..||.++.++-=..+++.++.+++--..-.+-|||++|...+..-+- .-|.+.||..|.+.+..+
T Consensus 111 s~f~Ka~iKkL~~~itg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 111 SAFPKAQIKKLMSSITGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred hcCCHHHHHHHHHHHhCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 4689999999999887777999999999999999999999999999987665 469999999999987654
No 83
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=74.70 E-value=18 Score=30.44 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=49.9
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
..+|.++.++.+ +|.......+..+..|..++.-..+.+. +.++|.++.++- +++...|+.|..
T Consensus 49 ~~i~~l~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~---------~~~~~~~~~a~~ 113 (120)
T cd00020 49 GGLPALVQLLKS------EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD---------SSNEDIQKNATG 113 (120)
T ss_pred CChHHHHHHHhC------CCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHh---------cCCHHHHHHHHH
Confidence 566777766654 3566677788888888888764444444 457888887752 236799999999
Q ss_pred HHHHHH
Q 009148 288 LVAAIC 293 (542)
Q Consensus 288 lL~~I~ 293 (542)
+|..||
T Consensus 114 ~l~~l~ 119 (120)
T cd00020 114 ALSNLA 119 (120)
T ss_pred HHHHhh
Confidence 999887
No 84
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=72.47 E-value=23 Score=28.04 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRH 50 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrh 50 (542)
.+|.+-+.-+.+..|+..-+..+.+.++--....+.+|+.+|..+.|.
T Consensus 2 ~IPD~v~~~yL~~~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~ 49 (51)
T PF03540_consen 2 TIPDEVTDYYLERSGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI 49 (51)
T ss_pred CCCHHHHHHHHHHCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999998888999999999999999999999888764
No 85
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=69.38 E-value=24 Score=39.01 Aligned_cols=143 Identities=18% Similarity=0.297 Sum_probs=85.0
Q ss_pred ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHhcCCCCCchh
Q 009148 249 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV----YNTLQTRLTKTLLNALLDPKRALTQ 324 (542)
Q Consensus 249 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~----y~~L~~RI~~tL~k~llDp~ksl~t 324 (542)
+|.|++.+|+-.+...+-... + .+| +|--+++=+++..+... ...+-++++..+..+-.||.+|..+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~--s--~EN-----eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~Fn 89 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPG--S--AEN-----EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFN 89 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT---S--TC------HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCC--C--ccc-----hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence 688999999988888774331 1 344 45555666666555544 4677778888888888999999999
Q ss_pred hh--hHHHHHHhhCH----H---HHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHH--HHHHHhhh
Q 009148 325 HY--GAVQGLAALGP----N---VVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG--QCIYDRLK 393 (542)
Q Consensus 325 ~Y--GAI~GL~aLG~----~---aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g--~~~~~~~~ 393 (542)
|| =+|..|..... + .++..++|-+..++. .+ -..--..+.++.+.|+..-. .+-..-..
T Consensus 90 HylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq-------~d---V~EF~PYvfQIla~Lle~~~~~~~p~~y~~ 159 (435)
T PF03378_consen 90 HYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQ-------QD---VQEFIPYVFQILAQLLELRPSSPLPDAYKQ 159 (435)
T ss_dssp HHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHH-------TT----TTTHHHHHHHHHHHHHHSS--S--TTTGG
T ss_pred hhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence 98 45555555433 3 345555665555432 11 11233456777777777644 22233344
Q ss_pred cCCCCCCCCcchhhcccCcc
Q 009148 394 IFPPLSSLPARSVWKTNGIV 413 (542)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~ 413 (542)
.+|.+.+| .+|...|++
T Consensus 160 L~~~Ll~p---~lWe~~gni 176 (435)
T PF03378_consen 160 LFPPLLSP---ALWERRGNI 176 (435)
T ss_dssp GHHHHTSG---GGGGSTTTH
T ss_pred HHHHHcCc---chhccCCCc
Confidence 55555655 789888876
No 86
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.98 E-value=93 Score=38.25 Aligned_cols=187 Identities=17% Similarity=0.143 Sum_probs=122.2
Q ss_pred HHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCC
Q 009148 195 KQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL 274 (542)
Q Consensus 195 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~ 274 (542)
..||..|+..=|=.+++|-+..++..-+++ .++..-...|..+-++..=-+=.++.-|.+++|.|+..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S--~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l--------- 398 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPPLFEALEAMLQS--TEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGL--------- 398 (1075)
T ss_pred HHHHHHHHhcCChhhehHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhc---------
Confidence 578889999888888899888888766655 356666667777777777666667777777777666432
Q ss_pred CCccHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHH
Q 009148 275 ADNHWELRDFTAKLVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLS 353 (542)
Q Consensus 275 ~~~hw~LRd~AA~lL~~I~~k~~~~y~-~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~ 353 (542)
.|.|=..|.-|-+.++++...|..... .-..|+.--|.-. +|.......+--|..+|..|-.+.-...|-|+|+.+++
T Consensus 399 ~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~-ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 399 NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL-LDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH-hcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 477999999999999998876653221 1112233333333 34444444444556667777777777788899999998
Q ss_pred hhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 009148 354 LLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIYDRLKIFPPL 398 (542)
Q Consensus 354 ~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~~~~~~~~~~ 398 (542)
..-..+... ..+..-+.|..+|=.++..+-.+.++-|.++
T Consensus 478 ~~l~~L~~~-----~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~ 517 (1075)
T KOG2171|consen 478 KKLLLLLQS-----SKPYVQEQAVTAIASVADAAQEKFIPYFDRL 517 (1075)
T ss_pred HHHHHHhcC-----CchhHHHHHHHHHHHHHHHHhhhhHhHHHHH
Confidence 433334322 1233456677777776666666666666544
No 87
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=68.89 E-value=15 Score=41.47 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=45.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVE--YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVE--yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
++..|+..|+ .+++++.+.|+.... -.+..+++.|..++...+|..++.+||..++..-.
T Consensus 272 l~~~a~k~~i-~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 272 AKNAAEKIGI-NLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HHHHHHHcCC-CcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 4556677887 599999998876554 24566778888878777889999999999986543
No 88
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=68.69 E-value=15 Score=34.14 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 21 FSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 21 Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
++-++...+-..+...+..|+.||.++++-.||.+++..+|..|++++
T Consensus 56 is~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 56 ISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 455555666666666688889999999999999999999999999874
No 89
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=68.64 E-value=58 Score=36.49 Aligned_cols=158 Identities=11% Similarity=0.182 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHcCCCcHH---HHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccc
Q 009148 175 QLYFDKITELAVSRSDSV---LFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE 251 (542)
Q Consensus 175 Q~Yf~kIt~a~l~~~d~~---~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Le 251 (542)
..+.+.+.-.|+..++.+ .-.++|..+=.+-....+.|.+..|+..++.+.-. ......++.+..++.++.-.++
T Consensus 36 ~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~--~Vr~l~l~~l~~~~~~~~~~~~ 113 (503)
T PF10508_consen 36 ERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSP--KVRRLALKQLGRIARHSEGAAQ 113 (503)
T ss_pred HhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCHHHHH
Confidence 344444444444443322 22355776666777788899999999999988543 2223334556666666655444
Q ss_pred cch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCCC-CCchhhhhH
Q 009148 252 PYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDPK-RALTQHYGA 328 (542)
Q Consensus 252 pYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~llDp~-ksl~t~YGA 328 (542)
... +.++|.|+.|+-. ..-.+-..|+++|..|++. ...+..+ .+.+...|.+.+..++ ......|-.
T Consensus 114 ~~~~~~l~~~i~~~L~~---------~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el 183 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRD---------PDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYEL 183 (503)
T ss_pred HhcCccHHHHHHHHHcC---------CcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 444 6788999999733 3447889999999999963 3222222 2222555555554322 235677888
Q ss_pred HHHHHhhCHHHHHHhh
Q 009148 329 VQGLAALGPNVVRLLL 344 (542)
Q Consensus 329 I~GL~aLG~~aVr~li 344 (542)
++-++...+++...+.
T Consensus 184 ~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 184 LVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHhcCHHHHHHHH
Confidence 8888888888776654
No 90
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=68.34 E-value=46 Score=36.31 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009148 253 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGL 332 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL 332 (542)
-+..++|.|..|+ .++++.+|..|+-.+.+|++.+.+..+.- +...+.+.|.|++ ....+.|+..+
T Consensus 111 ~~~~l~~~v~~ll---------~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~--~~V~~~a~~~l 176 (526)
T PF01602_consen 111 MAEPLIPDVIKLL---------SDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKD--PSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHHHHHH---------HSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSS--HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHh---------cCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCc--chhHHHHHHHH
Confidence 3455666666665 24578999999999999999965544331 5666767776544 78888899888
Q ss_pred Hhh
Q 009148 333 AAL 335 (542)
Q Consensus 333 ~aL 335 (542)
..+
T Consensus 177 ~~i 179 (526)
T PF01602_consen 177 SEI 179 (526)
T ss_dssp HHH
T ss_pred HHH
Confidence 888
No 91
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=66.27 E-value=1.2e+02 Score=33.48 Aligned_cols=135 Identities=16% Similarity=0.228 Sum_probs=86.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCC-----ccccchhHHHHHHHHhh-----------------ccC-
Q 009148 170 LSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSG-----LHPLVPYFTYFVADEVS-----------------RGL- 226 (542)
Q Consensus 170 LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~g-----L~qLLPYfv~FI~e~V~-----------------~nl- 226 (542)
+.-+-..||+.|++.-. .+|-.++-+||..|..+-. ...+.|.+++|+..... .+.
T Consensus 64 ~~~~R~~fF~~I~~~~~-~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~ 142 (464)
T PF11864_consen 64 SGLMRAEFFRDISDPSN-DDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLS 142 (464)
T ss_pred cHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 45566789999976533 2344567789999987643 67799999999977660 111
Q ss_pred ---CCHHHHHHHHHHHHHhhcCCCCccc-cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchh
Q 009148 227 ---NNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT 302 (542)
Q Consensus 227 ---~nl~~L~~lmrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~ 302 (542)
.+-..+..+++++..++..++-+++ ..++.++..+++++.... +.=.| +-+-+++..|+. ||.-=..
T Consensus 143 ~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts-------~~~di-~~~L~vldaii~-y~~iP~~ 213 (464)
T PF11864_consen 143 NLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTS-------SEDDI-EACLSVLDAIIT-YGDIPSE 213 (464)
T ss_pred cccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccC-------cHHHH-HHHHHHHHHHHH-cCcCChH
Confidence 1345688899999999999999887 788888887776632221 11122 223333444433 6654444
Q ss_pred HHHHHHHHHHHH
Q 009148 303 LQTRLTKTLLNA 314 (542)
Q Consensus 303 L~~RI~~tL~k~ 314 (542)
--+.++.+|..+
T Consensus 214 sl~~~i~vLCsi 225 (464)
T PF11864_consen 214 SLSPCIEVLCSI 225 (464)
T ss_pred HHHHHHHHHhhH
Confidence 445555555555
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=64.54 E-value=15 Score=38.11 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++..|+ .++++++..|++-++-.++.++++.-|....++ +++|.+||+.++
T Consensus 183 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-~~it~~~v~~~~ 239 (355)
T TIGR02397 183 ERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLLDQLISFGN-GNITYEDVNELL 239 (355)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-CCCCHHHHHHHh
Confidence 356777788998 499999999999999889999998888887766 459999998876
No 93
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=61.79 E-value=25 Score=31.56 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=49.3
Q ss_pred CCChHHHHHHHH---HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQ---SIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAe---s~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
-+|.+-||.|-+ -+|- ++...--.....+|..+.+|++++.|-+|.-.-+++|.+.+.+|...
T Consensus 23 rFP~ar~KkIMQ~deDiGK--V~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~s 88 (113)
T COG5247 23 RFPIARLKKIMQLDEDIGK--VGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATES 88 (113)
T ss_pred cCCHHHHHHHHHhhhhhhh--hhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhh
Confidence 478888888764 2332 44433344567899999999999999999999999999999999753
No 94
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=60.80 E-value=48 Score=39.96 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCC------CcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhhcCC
Q 009148 175 QLYFDKITELAVSR------SDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRG--LNNYSLLFALMRVVWNLLQNP 246 (542)
Q Consensus 175 Q~Yf~kIt~a~l~~------~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~n--l~nl~~L~~lmrmv~ALl~Np 246 (542)
|.||-.|.-.++.. +.+..+-+||..+=++--.++++|.+-.-.-- +-+. +-|...-...++.+.-++.=-
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPL-LLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPL-LLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHH-HHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 78898887766542 23456678998777777778888877544421 1222 233333223445555555555
Q ss_pred CCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCC
Q 009148 247 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRA 321 (542)
Q Consensus 247 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ks 321 (542)
+=-+..|+.-++|.++.. ...+.+|--..|..|-++|..+.++--+.| ..-|+.|++.+.+.|-||++-
T Consensus 941 ~tL~t~~~~Tlvp~lLsl------s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSL------SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred cccchHHHhHHHHHHHhc------CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 555678888899887754 222233458999999999999999644444 566889999999999988763
No 95
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=59.93 E-value=45 Score=31.13 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHcCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 3 IVPKETVEVIAQSIGISN--FSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~--Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
-+|++||+-+..++==.+ ++.|+-..+-..-=|.|.-+--+|.+.+..-+.+|+..++|-.||+.+..+
T Consensus 11 sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKALenLef~ 81 (148)
T COG5150 11 SLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKALENLEFE 81 (148)
T ss_pred cCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhccHH
Confidence 389999988877653333 567887777777778899999999999999999999999999999987643
No 96
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=58.91 E-value=22 Score=36.45 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+.++.+++..|+. +++++++.|+....--+|+++...-+.. .+..++|.+||+.++..
T Consensus 191 ~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~~l~~~~--~~~~~It~~~v~~~~~~ 248 (337)
T PRK12402 191 DVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAILTLQTAA--LAAGEITMEAAYEALGD 248 (337)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH--HcCCCCCHHHHHHHhCC
Confidence 3466777788995 9999999999999888999888877766 34458999999987753
No 97
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=58.46 E-value=1.4e+02 Score=31.43 Aligned_cols=98 Identities=16% Similarity=0.178 Sum_probs=62.8
Q ss_pred ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009148 249 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG--HVYNTLQTRLTKTLLNALLDPKRALTQHY 326 (542)
Q Consensus 249 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~--~~y~~L~~RI~~tL~k~llDp~ksl~t~Y 326 (542)
+++.+...|+..++.|+ |+ |. . .=+..|+++++.+|-+.| .....+...+...|.+++.|...+....=
T Consensus 79 ~v~~~~~tL~~~~~k~l--kk-g~-~-----~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~ 149 (309)
T PF05004_consen 79 FVEDRRETLLDALLKSL--KK-GK-S-----EEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARA 149 (309)
T ss_pred HHHHHHHHHHHHHHHHh--cc-CC-H-----HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHH
Confidence 45555666777777776 21 11 1 237789999999999965 77788889999999999999876655432
Q ss_pred ------hHHHHHHhhCHHHHHHhhccChHHHHHhhh
Q 009148 327 ------GAVQGLAALGPNVVRLLLLPNLGPYLSLLE 356 (542)
Q Consensus 327 ------GAI~GL~aLG~~aVr~lilP~L~~y~~~Le 356 (542)
|.++-+..-+.+.+.. ++..+..+|....
T Consensus 150 ~~~~aLai~~fv~~~d~~~~~~-~~~~le~if~~~~ 184 (309)
T PF05004_consen 150 ACLEALAICTFVGGSDEEETEE-LMESLESIFLLSI 184 (309)
T ss_pred HHHHHHHHHHHhhcCChhHHHH-HHHHHHHHHHHHh
Confidence 3333333334444443 3456665555443
No 98
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.99 E-value=2e+02 Score=29.93 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=81.8
Q ss_pred ccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCC
Q 009148 168 HILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH 247 (542)
Q Consensus 168 h~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~ 247 (542)
..+|.|.-.+.+++-...... +.+ -+..|.. ....-|+..+..- -.+...+.|++.++.-|+....
T Consensus 24 ~~is~~~~~~ik~~~~~~~~~-----~~~---~~~~~~~--~~~~~~l~lL~~~----~~~~d~v~yvL~li~dll~~~~ 89 (312)
T PF03224_consen 24 GLISEEDLSLIKKLDKQSKEE-----RRE---LLEEDGD--QYASLFLNLLNKL----SSNDDTVQYVLTLIDDLLSDDP 89 (312)
T ss_dssp TSS-HHHHHHHHHHHHHHH-----------------------------HHHHHH-------HHHHHHHHHHHHHHHH-SS
T ss_pred CCCCHHHHHHHHHHHCCCHHH-----HHH---HHHhchh--hHHHHHHHHHHHc----cCcHHHHHHHHHHHHHHHhcCH
Confidence 467888877777776655322 111 2232221 2222223333221 2677889999988888887766
Q ss_pred CccccchhhHHH----HHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC--
Q 009148 248 IQIEPYLHQLMP----SVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRA-- 321 (542)
Q Consensus 248 L~LepYLHqLlP----svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ks-- 321 (542)
.....++.+-. ...+..+. .+ . .++|.+...|+.+|+.++...+..-......++..+.+.+.+-.++
T Consensus 90 -~~~~~~~~~~~~~~~~~~~~fl~-ll-~---~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~ 163 (312)
T PF03224_consen 90 -SRVELFLELAKQDDSDPYSPFLK-LL-D---RNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSD 163 (312)
T ss_dssp -SSHHHHHHHHH-TTH--HHHHHH-H--S----SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHH
T ss_pred -HHHHHHHHhcccccchhHHHHHH-Hh-c---CCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCC
Confidence 33333333221 11122221 11 1 3488999999999999998877666554456666666666543332
Q ss_pred chhhhhHHHHHHhh-CHHHHHHhhcc
Q 009148 322 LTQHYGAVQGLAAL-GPNVVRLLLLP 346 (542)
Q Consensus 322 l~t~YGAI~GL~aL-G~~aVr~lilP 346 (542)
....+.|+.+|+.| ..+..|..++-
T Consensus 164 ~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 164 SELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp H---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred cchHHHHHHHHHHHhCcchhHHHHHh
Confidence 23349999999997 66777776644
No 99
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=56.50 E-value=41 Score=38.82 Aligned_cols=61 Identities=21% Similarity=0.283 Sum_probs=47.8
Q ss_pred HHHHHHHcC-CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 9 VEVIAQSIG-ISNFSTDAALALAPDVE-------------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 9 Ik~iAes~G-i~~Lsdeaa~~La~dVE-------------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
|...++.-| +..+++++...|.+... ..|..++++|..+++..++.+++.+||..|++...
T Consensus 318 i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 318 VAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHH
Confidence 344445554 66799999998876543 45778999998899888999999999999998753
No 100
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.01 E-value=66 Score=31.57 Aligned_cols=137 Identities=21% Similarity=0.252 Sum_probs=79.4
Q ss_pred HHHHHHHhhcC-CCCccccchhhHHHHH-----------HHHHhccccCCCCCCccHHHHHHHHHHHHHHHHH-------
Q 009148 235 LMRVVWNLLQN-PHIQIEPYLHQLMPSV-----------VTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR------- 295 (542)
Q Consensus 235 lmrmv~ALl~N-p~L~LepYLHqLlPsv-----------LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k------- 295 (542)
.+.++.+|+++ +.=.+..|.+.|+|.. +||++. |..-..|--|+++++.+.+.
T Consensus 6 Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~--------Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 6 ALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILK--------DPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred HHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHc--------CCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 56778899998 7778899999999866 444432 44558999999999998854
Q ss_pred ------hCCCchhHHHHHH-------HHHHHHhcCCCCCchhhhhHHHHHHhhCHHH-HHHhhccChHHHHHhhhHhHhh
Q 009148 296 ------YGHVYNTLQTRLT-------KTLLNALLDPKRALTQHYGAVQGLAALGPNV-VRLLLLPNLGPYLSLLEPEMLL 361 (542)
Q Consensus 296 ------~~~~y~~L~~RI~-------~tL~k~llDp~ksl~t~YGAI~GL~aLG~~a-Vr~lilP~L~~y~~~Le~~l~~ 361 (542)
-..+|..+-.++. +.|..++..+ +...+.=-.+.+|..|-..+ -..+=-..+...+..+.+.+..
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E-~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE-KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 1224444444333 2333344433 33334445555555553321 1111122334444444444432
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH
Q 009148 362 EKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 362 ~~~~~~~~r~ea~~v~gaLl~a 383 (542)
.+..++..+.-|+|+|+.+
T Consensus 157 ---~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 157 ---RDPNVRVAALSCLGALLSV 175 (182)
T ss_pred ---CCCcHHHHHHHHHHHHHcC
Confidence 3345777788888888765
No 101
>PRK09687 putative lyase; Provisional
Probab=55.18 E-value=17 Score=37.61 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=44.5
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 338 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~ 338 (542)
+..|.+|..|+..|+++|.... .-.+++...+...+.|+ +...+++|+.+|..+|..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDK--STNVRFAVAFALSVINDE 158 (280)
T ss_pred CCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCC--CHHHHHHHHHHHhccCCH
Confidence 5678999999999999975442 22567777788888876 567899999999998753
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.70 E-value=27 Score=39.31 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+.++.+++.-|+ .++++++..|++..+--+|.++++.-+.+.+++ +++|.+||+..+-
T Consensus 182 ~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~alslLdqli~y~~-~~It~e~V~~llg 239 (491)
T PRK14964 182 EHLVDIAKKENI-EHDEESLKLIAENSSGSMRNALFLLEQAAIYSN-NKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 456788888999 499999999999999999999999989888887 4899999998773
No 103
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=54.64 E-value=15 Score=34.62 Aligned_cols=78 Identities=15% Similarity=0.289 Sum_probs=49.2
Q ss_pred CCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch--hhHHHHHHHHHhccccCCCCCCccHHHH
Q 009148 205 SGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL--HQLMPSVVTCLVAKRLGNRLADNHWELR 282 (542)
Q Consensus 205 ~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LR 282 (542)
-|+..|+-.+.++.. .-..+-.+.......++.++||+.|.. -++-.+ +..+..+..|+.+ .+...|
T Consensus 107 ~G~~~L~~~L~~~~~-~~~~~~~~~~~~~~~l~Clkal~n~~~-G~~~v~~~~~~v~~i~~~L~s---------~~~~~r 175 (187)
T PF06371_consen 107 GGLEALLNVLSKLNK-KKEKSEEDIDIEHECLRCLKALMNTKY-GLEAVLSHPDSVNLIALSLDS---------PNIKTR 175 (187)
T ss_dssp HHHHHHHHHHHHHHT-HHCTCTTCHHHHHHHHHHHHHHTSSHH-HHHHHHCSSSHHHHHHHT--T---------TSHHHH
T ss_pred CCHHHHHHHHHHhhh-hhhhcchhHHHHHHHHHHHHHHHccHH-HHHHHHcCcHHHHHHHHHHCC---------CCHHHH
Confidence 455555555544432 222224566778889999999998874 233333 2455666666543 356899
Q ss_pred HHHHHHHHHHH
Q 009148 283 DFTAKLVAAIC 293 (542)
Q Consensus 283 d~AA~lL~~I~ 293 (542)
..|..+|+.||
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 104
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=54.26 E-value=23 Score=35.77 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=58.2
Q ss_pred CChHHHHHHHHH-cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 4 VPKETVEVIAQS-IGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 4 ~p~e~Ik~iAes-~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
+|.+-||.+-+. -|+.-++.||--..|.-.|-.|.|+.-.|--.++..||++|...||-.|++-..+
T Consensus 110 LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeM 177 (286)
T COG5208 110 LPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEM 177 (286)
T ss_pred CcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHH
Confidence 788888877664 3555688899899999999999999999999999999999999999999987554
No 105
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=54.04 E-value=1.6e+02 Score=32.18 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhH
Q 009148 280 ELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEM 359 (542)
Q Consensus 280 ~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l 359 (542)
.+++.+...+..++.++ +.++..++..+.+.+.+ ...-...-.+++.+++.|...-.. - ....+.+.+....
T Consensus 392 ~~~~~~~~~i~~ll~~~----~~~~~~~l~~L~~~l~~-~~~~~~~~~~~wilGEy~~~~~~~--~-~~~~~~~~l~~~~ 463 (526)
T PF01602_consen 392 YVSNEIINVIRDLLSNN----PELREKILKKLIELLED-ISSPEALAAAIWILGEYGELIENT--E-SAPDILRSLIENF 463 (526)
T ss_dssp GCHCHHHHHHHHHHHHS----TTTHHHHHHHHHHHHTS-SSSHHHHHHHHHHHHHHCHHHTTT--T-HHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhhcC----hhhhHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccCCccccc--c-cHHHHHHHHHHhh
Confidence 34666677777777664 67788889999998887 333445778899999988876550 0 2333333332222
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 009148 360 LLEKQKNEVKRHEAWRVYGALLQAAGQCI 388 (542)
Q Consensus 360 ~~~~~~~~~~r~ea~~v~gaLl~a~g~~~ 388 (542)
. .+...|...++.|+.+..
T Consensus 464 ~----------~~~~~vk~~ilt~~~Kl~ 482 (526)
T PF01602_consen 464 I----------EESPEVKLQILTALAKLF 482 (526)
T ss_dssp T----------TSHHHHHHHHHHHHHHHH
T ss_pred c----------cccHHHHHHHHHHHHHHH
Confidence 1 123456666777765554
No 106
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=52.12 E-value=51 Score=35.72 Aligned_cols=143 Identities=15% Similarity=0.228 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhcCCCC---c-cccchhhHHHHHHHHHhccccCCCC-------------------CCccHHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHI---Q-IEPYLHQLMPSVVTCLVAKRLGNRL-------------------ADNHWELRDFTAKL 288 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L---~-LepYLHqLlPsvLTCll~k~l~~~~-------------------~~~hw~LRd~AA~l 288 (542)
+...++.+.+....++. + -++.|.+|+- -+|-+.+|-+. ..|.-.-|.-|.++
T Consensus 159 v~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie----~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~df 234 (370)
T PF08506_consen 159 VSKALQFLSSVAESPHHKNLFENKPHLQQIIE----KVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDF 234 (370)
T ss_dssp HHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH----HTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHH
T ss_pred HHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH----HhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHH
Confidence 33466777777766642 1 2455555554 34444444331 12345677788899
Q ss_pred HHHHHHHhCCCchhHHHH-HHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHH------HH--HhhccChHHHHHhhhHhH
Q 009148 289 VAAICKRYGHVYNTLQTR-LTKTLLNALLDPKRALTQHYGAVQGLAALGPNV------VR--LLLLPNLGPYLSLLEPEM 359 (542)
Q Consensus 289 L~~I~~k~~~~y~~L~~R-I~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~a------Vr--~lilP~L~~y~~~Le~~l 359 (542)
|..+|++|+.....+-.. |...|.+.=.+|....-..-||+.-+.++.... |. ..+++-...+...+-|++
T Consensus 235 l~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL 314 (370)
T PF08506_consen 235 LRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPEL 314 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHh
Confidence 999999998654433333 333333333478888999999999888874332 11 123444555566788888
Q ss_pred hhhhhhhhhhhhhHHHHHH
Q 009148 360 LLEKQKNEVKRHEAWRVYG 378 (542)
Q Consensus 360 ~~~~~~~~~~r~ea~~v~g 378 (542)
..+.......|.+|-++.-
T Consensus 315 ~~~~~~~piLka~aik~~~ 333 (370)
T PF08506_consen 315 QPDVNSHPILKADAIKFLY 333 (370)
T ss_dssp H-SS-S-HHHHHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHH
Confidence 7322333456666655543
No 107
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=51.28 E-value=54 Score=26.53 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=39.7
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 338 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~ 338 (542)
+..|.+|..|+.+|+.+. .+++...|.+.+.| .......=|+..|..+|..
T Consensus 11 ~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d--~~~~vr~~a~~aL~~i~~~ 61 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELG----------DPEAIPALIELLKD--EDPMVRRAAARALGRIGDP 61 (88)
T ss_dssp SSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTS--SSHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCH
Confidence 567899999999999332 23677888888854 5578889999999999863
No 108
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=50.91 E-value=2e+02 Score=27.90 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHhhcCCC---Ccc--ccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc
Q 009148 227 NNYSLLFALMRVVWNLLQNPH---IQI--EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY 300 (542)
Q Consensus 227 ~nl~~L~~lmrmv~ALl~Np~---L~L--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y 300 (542)
+|...-...++.+..++.+-. -.+ ...+.++++.+..|+- |..=.+|+.|-+++..+.+.|+..-
T Consensus 143 Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~---------D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 143 KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLS---------DADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHT---------SS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCC---------CCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 444444455666666555544 233 3345788888888762 3445999999999999998887643
No 109
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=50.14 E-value=61 Score=32.16 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHcCC---CCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 12 IAQSIGI---SNFSTDAALALAPDVE---YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 12 iAes~Gi---~~Lsdeaa~~La~dVE---yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
.++..|. ..+++++++.|++... ..|.+++..|...+-..+.+.++.+||+.|++..+
T Consensus 204 ~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 204 RLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred HHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 3445564 3699999999988776 47888899998888777888999999999998765
No 110
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=49.27 E-value=1.1e+02 Score=29.26 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH-HHHHhhccCh-HHHHHhh
Q 009148 278 HWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN-VVRLLLLPNL-GPYLSLL 355 (542)
Q Consensus 278 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~-aVr~lilP~L-~~y~~~L 355 (542)
|..+|--+...++.+|.+|. ++-.+.+..+.+.|.|+ +...+..|+..|+.|-.+ .++. -+++ ..+...
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~--k~~l~~~~l~~- 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKV--KGQLFSRILKL- 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceee--hhhhhHHHHHH-
Confidence 57899999999999999986 56667777788888876 577889999999998432 1111 1122 223222
Q ss_pred hHhHhhhhhhhhhhhhhHHHHHHHHHHH
Q 009148 356 EPEMLLEKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 356 e~~l~~~~~~~~~~r~ea~~v~gaLl~a 383 (542)
+.+ .|..+|.-|..+..-+..-
T Consensus 72 ---l~D---~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 ---LVD---ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred ---HcC---CCHHHHHHHHHHHHHHHHh
Confidence 222 3445666666666655554
No 111
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=48.83 E-value=45 Score=30.12 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 23 TDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 23 deaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++.+..|-+-|-..|.++.+.| |.-++|.++.++||..+||-
T Consensus 30 ~~tv~~Le~iV~~Yi~elt~~a---~~~g~rgk~~veD~~f~lRk 71 (109)
T KOG3901|consen 30 PETVDLLEDIVLEYITELTHAA---MEIGKRGKVKVEDFKFLLRK 71 (109)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH---HHhcccCceeHHHHHHHHHh
Confidence 4677888888989999996654 55559999999999999974
No 112
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=48.58 E-value=64 Score=32.61 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.+|++-||.|-++= .|..+...+=-.+...+|..+..|++.+.+..+--.-++|+++++.+|...-
T Consensus 13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~ 79 (224)
T KOG1659|consen 13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESD 79 (224)
T ss_pred cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhcc
Confidence 47778888887541 2333555555678899999999999999999999999999999999998753
No 113
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=48.33 E-value=49 Score=34.20 Aligned_cols=57 Identities=21% Similarity=0.092 Sum_probs=43.8
Q ss_pred ccHHHHHHHHHHHHHHHHHhCCCchhHHH---------HHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 277 NHWELRDFTAKLVAAICKRYGHVYNTLQT---------RLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 277 ~hw~LRd~AA~lL~~I~~k~~~~y~~L~~---------RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
++=.+|--|.+.+-.+.-.||..+-.-.. .+.+.|.+.+.+. ......=|+-|++.|
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KL 141 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKL 141 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHH
Confidence 47799999999999999999977754444 5888888888755 444667777888775
No 114
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=48.23 E-value=48 Score=30.25 Aligned_cols=43 Identities=26% Similarity=0.159 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 23 TDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 23 deaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+.++.|-+.|-..+.++.-+|...+. -|.++.++|+..|||.
T Consensus 30 ~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~ 72 (126)
T COG5248 30 YDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRR 72 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhh
Confidence 477899999999999999999999888 7899999999999985
No 115
>PRK09087 hypothetical protein; Validated
Probab=48.06 E-value=92 Score=31.10 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHS--RRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhs--kR~~Lt~~DI~~AL~~~ 68 (542)
-++..++..|+ .+++|+...|++.++-.++.+..-..+.-+.+ ..+++|...++.+|+..
T Consensus 161 iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 161 VIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 46677778898 59999999999999988888887333333333 33569999999999764
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.91 E-value=42 Score=35.45 Aligned_cols=57 Identities=23% Similarity=0.308 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.++.+|+.-|++ ++++++..|++-...-++.++++.-|..-.++.+ +|.+||...+.
T Consensus 175 ~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 175 HLAGIAVKEGIK-FEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhC
Confidence 567778889994 9999999999998888888888888877776655 99999887663
No 117
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.49 E-value=2.6e+02 Score=32.45 Aligned_cols=140 Identities=17% Similarity=0.152 Sum_probs=90.5
Q ss_pred cccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 208 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 208 ~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
.-=+|-|+..+.+.+..- |...-..++.-+.-|-.=|.+.+-.|+..+++-+++.+ .|++-++|+.+..
T Consensus 162 tFsL~~~ipLL~eriy~~--n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~L---------sD~s~eVr~~~~t 230 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVI--NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNML---------SDSSDEVRTLTDT 230 (675)
T ss_pred ccCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHh---------cCCcHHHHHHHHH
Confidence 344777777777777654 56667778888889999999999999999999888764 4677899999998
Q ss_pred HHHHHHHHhCCCchh-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhh
Q 009148 288 LVAAICKRYGHVYNT-LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLL 361 (542)
Q Consensus 288 lL~~I~~k~~~~y~~-L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~ 361 (542)
+|+.....-.++=.+ =..++..++...+..+..- ..--|+.=+.+|=+-.=+. ++|+++.++..|-|-+.+
T Consensus 231 ~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~--iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPE--IQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHhcCccccCcccchhhccccccCCcHH--HHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCC
Confidence 887776554433222 2345555555554432221 2223344454442222222 577888888777665543
No 118
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=47.17 E-value=14 Score=35.36 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=56.6
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 1 MSIVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
|+.+|...|+.+-+.= .++-+.+++...++.-+|-.++++-.++-.+...+||+++..-|++.|.+.-
T Consensus 57 l~rLpL~rik~vvkl~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~ 125 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAV 125 (162)
T ss_pred hhhccHHHHHhhccCCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccch
Confidence 4567777777766543 2334678999999999999999999999999999999999999999988653
No 119
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=46.25 E-value=60 Score=40.71 Aligned_cols=116 Identities=25% Similarity=0.262 Sum_probs=73.5
Q ss_pred HHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHH
Q 009148 235 LMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLN 313 (542)
Q Consensus 235 lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k 313 (542)
.+-++.+.+.|..+... .||+++--+-..+.++ ..++||-|-++++.|.+--|..| ..+-+-+--|+.+
T Consensus 544 ~~~~~~~~l~~~~i~~~-~L~~illkic~~l~~~---------s~e~rd~srktl~~i~k~Lg~~yl~~Vi~el~~Tl~r 613 (1364)
T KOG1823|consen 544 ALVFLVLFLGNAEIVLR-NLPSILLDICYLLRSR---------SAELRDASRKTLAKIIKILGPKYLYFVIKELQTTLKR 613 (1364)
T ss_pred HHHHHHhcccchHHHHh-cCcHHHHHHHHHHhhh---------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34455666666655444 4444443222223333 34899999999999999988877 4566667777777
Q ss_pred HhcCCCCCchhhh--hHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhh
Q 009148 314 ALLDPKRALTQHY--GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLE 362 (542)
Q Consensus 314 ~llDp~ksl~t~Y--GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~ 362 (542)
-+.=-...++.|| ||+.+...-|. ...++=|.+....+.+--+...+
T Consensus 614 g~q~hvl~~tvh~ll~a~~~v~~~g~--Ld~~~~~~i~i~~e~~fg~v~~e 662 (1364)
T KOG1823|consen 614 GFQVHVLSYTVHYLLGAMKNVLKAGS--LDTCLDPIIKIFNENLFGEVGKE 662 (1364)
T ss_pred hhhhhhhHHHHHHHHHHHhccccccc--HHHHHHHHHHHHHHHHHHHHhhh
Confidence 7765566777777 77776666665 34445566666666665444443
No 120
>PRK09687 putative lyase; Provisional
Probab=43.41 E-value=3.9e+02 Score=27.62 Aligned_cols=133 Identities=16% Similarity=0.174 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcC--CccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccc
Q 009148 174 LQLYFDKITELAVSRSDSVLFKQALVSLATDS--GLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE 251 (542)
Q Consensus 174 lQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~--gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Le 251 (542)
+...+.-+...+..+.+..+|..|...|-.-. +... .|.++. .....+.+-.. ..-...+.||- .+ .
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-~~~a~~----~l~~~~~D~~~-~VR~~a~~aLg---~~--~ 156 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-SPKIVE----QSQITAFDKST-NVRFAVAFALS---VI--N 156 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-chHHHH----HHHHHhhCCCH-HHHHHHHHHHh---cc--C
Confidence 34556666666666666777877777775431 1111 122211 11111111000 11234456662 11 1
Q ss_pred cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHH
Q 009148 252 PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQG 331 (542)
Q Consensus 252 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~G 331 (542)
-..-++.++.++ .++.|.+|..|+.-|+.+ .++ . +.+...|.+.+.|+ .....-+|+.|
T Consensus 157 --~~~ai~~L~~~L---------~d~~~~VR~~A~~aLg~~--~~~--~----~~~~~~L~~~L~D~--~~~VR~~A~~a 215 (280)
T PRK09687 157 --DEAAIPLLINLL---------KDPNGDVRNWAAFALNSN--KYD--N----PDIREAFVAMLQDK--NEEIRIEAIIG 215 (280)
T ss_pred --CHHHHHHHHHHh---------cCCCHHHHHHHHHHHhcC--CCC--C----HHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 134566666664 256778999999998888 222 1 24566677777655 44557788888
Q ss_pred HHhhCHH
Q 009148 332 LAALGPN 338 (542)
Q Consensus 332 L~aLG~~ 338 (542)
|..+|..
T Consensus 216 Lg~~~~~ 222 (280)
T PRK09687 216 LALRKDK 222 (280)
T ss_pred HHccCCh
Confidence 8888764
No 121
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.62 E-value=37 Score=36.26 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
.++.+++..|+ .++++++..+++...--+|.++...-+....+ +..+|.+||..++....
T Consensus 186 ~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~-~~~It~~~v~~~l~~~~ 245 (363)
T PRK14961 186 FLKYILIKESI-DTDEYALKLIAYHAHGSMRDALNLLEHAINLG-KGNINIKNVTDMLGLLN 245 (363)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCC
Confidence 45667778897 49999999999988877887777776665554 67899999998885443
No 122
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=41.87 E-value=55 Score=37.74 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=48.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++.-|+. ++++++..|++-.+..+|.++++.-|.+.++ .+++|.+||...+
T Consensus 198 ~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g-~g~It~e~V~~ll 254 (598)
T PRK09111 198 AHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLSLLDQAIAHG-AGEVTAEAVRDML 254 (598)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCcCHHHHHHHh
Confidence 3567788888995 9999999999999999999999888877776 5689999999766
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=41.83 E-value=1.2e+02 Score=31.95 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 20 NFSTDAALALAPDVEY------RIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 20 ~Lsdeaa~~La~dVEy------rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.+++++++.+++.+.. ++.+++..|...+...++.+++.+||..|+...
T Consensus 228 ~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 228 VVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred CCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 5899999999888843 344777888888888888999999999999876
No 124
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=41.56 E-value=30 Score=26.19 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=29.7
Q ss_pred hhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH
Q 009148 242 LLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAI 292 (542)
Q Consensus 242 Ll~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I 292 (542)
|..+..-.+++|+.+++|.++.++ .|++-.+|..|+..|+.|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L---------~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLL---------QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHT---------TSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---------cCCCHHHHHHHHHHHhcC
Confidence 344445567788888888888665 123349999999988865
No 125
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=41.29 E-value=2.7e+02 Score=27.19 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=79.4
Q ss_pred cccchhhHHHHHHHHHhccc-------cCCC--CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCC
Q 009148 250 IEPYLHQLMPSVVTCLVAKR-------LGNR--LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKR 320 (542)
Q Consensus 250 LepYLHqLlPsvLTCll~k~-------l~~~--~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~k 320 (542)
|-|+|.+++|.++.=...+. +|+- -.||-.++|..|=.+|..+.+.+..... -.-+.......|.| ..
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 45778889998886554442 3432 1588999999999999999997665554 23345556677777 33
Q ss_pred Cch-hhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 009148 321 ALT-QHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 321 sl~-t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
.+- --|.-+.=|..+.+..+.. +|..+.+.++..+.. +.+....+.|.++-..++-.++-
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~----~Ld~l~~~l~~~L~~-k~k~~AvkQE~Ek~~E~~rs~lr 140 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQ----RLDSLVEPLRKTLSK-KLKENAVKQEIEKQQELIRSVLR 140 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHH----CCTTTHHHHHHHHH-----TTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHH----HHHHHHHHHHHHhhc-cCCCCcccccHHHHHHHHHHHHH
Confidence 322 2266666677777766655 577777777766653 33444566778887776655543
No 126
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=41.18 E-value=66 Score=32.64 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++..|+. ++++++..|++...--+|.++.+.-+.... .+++|.+||..++
T Consensus 168 ~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~ 223 (319)
T PRK00440 168 ERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKIT 223 (319)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHh
Confidence 3467777888984 999999999998887888888777766654 3689999998887
No 127
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=40.55 E-value=86 Score=36.63 Aligned_cols=59 Identities=27% Similarity=0.369 Sum_probs=51.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYR-------------IREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyr-------------lreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++.+++.-++..++.+|+..|....+.+ |.+++++|.-+++--+|+.++++||..|++.
T Consensus 327 ~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 327 VQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 5566777799999999999999888854 6789999999999999999999999999997
No 128
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.09 E-value=65 Score=34.86 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHS----RRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhs----kR~~Lt~~DI~~AL 65 (542)
.++.+++.-|++ ++++++..|++.+.-.++.++++.-|..-.+ .++++|.+||..++
T Consensus 194 ~l~~~~~~~g~~-i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 194 QLQGICEAEGIS-VDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 556667777884 9999999999999998999988887766553 46799999998877
No 129
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.32 E-value=1.4e+02 Score=31.24 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=65.2
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccc-hhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHH
Q 009148 217 FVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY-LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR 295 (542)
Q Consensus 217 FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k 295 (542)
|+.+.+...+..-..+.-++|.+++++.+-.-.+..- ...+--+++.|+++..+ .|..|..|.++|..++.+
T Consensus 164 ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~-------~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 164 LLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNV-------SWKVRRAALSALKKLYAS 236 (339)
T ss_pred hcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence 4466777776777788889999999998866544333 24555577888766533 579999999999999988
Q ss_pred hCCCchhHHHHHHHHHHHHhcC
Q 009148 296 YGHVYNTLQTRLTKTLLNALLD 317 (542)
Q Consensus 296 ~~~~y~~L~~RI~~tL~k~llD 317 (542)
.... +..-|+..+.+.+.+
T Consensus 237 ~~~~---l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 237 NPEL---LSKSLISGLWKWLSS 255 (339)
T ss_pred ChHH---HHHHHHHHHHHHHHh
Confidence 7753 555566666666543
No 130
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.95 E-value=6.4e+02 Score=31.08 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=77.8
Q ss_pred cchhHHHHHHHHhh------ccCCCHHHHHHHHHHHHHhhcCCCC-ccccchhhHHHHHHHHHhccccCCCCCCccHHHH
Q 009148 210 LVPYFTYFVADEVS------RGLNNYSLLFALMRVVWNLLQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELR 282 (542)
Q Consensus 210 LLPYfv~FI~e~V~------~nl~nl~~L~~lmrmv~ALl~Np~L-~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LR 282 (542)
-+|-++.|+.+-++ ...+|...-.--|||+-+|. ..| .=.||-.++=- .|.--|.+.+ ..+---||
T Consensus 407 ~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~--~~L~K~s~~~~~mE~-flv~hVfP~f----~s~~g~Lr 479 (1010)
T KOG1991|consen 407 TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA--SILLKKSPYKSQMEY-FLVNHVFPEF----QSPYGYLR 479 (1010)
T ss_pred hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH--HHHccCCchHHHHHH-HHHHHhhHhh----cCchhHHH
Confidence 34555555555555 34455555555666666655 111 22344333222 1111122211 23344799
Q ss_pred HHHHHHHHHHH-HHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh-CHHH-HHHhhccChHHHHHhh
Q 009148 283 DFTAKLVAAIC-KRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL-GPNV-VRLLLLPNLGPYLSLL 355 (542)
Q Consensus 283 d~AA~lL~~I~-~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL-G~~a-Vr~lilP~L~~y~~~L 355 (542)
-.|+-+++.+| -.|++ ++.-..+...-.+.|.+ ++.++..--|..+|..| -.+. ....+-||++.+++.|
T Consensus 480 arac~vl~~~~~~df~d--~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~l 552 (1010)
T KOG1991|consen 480 ARACWVLSQFSSIDFKD--PNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQEL 552 (1010)
T ss_pred HHHHHHHHHHHhccCCC--hHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHH
Confidence 99999999999 77875 44555566666677775 67888888999999988 2222 2233556666665543
No 131
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=38.82 E-value=2.2e+02 Score=27.02 Aligned_cols=122 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred cccch--hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH----HHhC--------------------------
Q 009148 250 IEPYL--HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAIC----KRYG-------------------------- 297 (542)
Q Consensus 250 LepYL--HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~----~k~~-------------------------- 297 (542)
++||. .+|++.++.++ -.+..|.+|..+-++|+.|= -+|.
T Consensus 2 v~PY~~yP~LL~~L~~iL--------k~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (160)
T PF11865_consen 2 VDPYLDYPELLDILLNIL--------KTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMM 73 (160)
T ss_pred cchHHHhHHHHHHHHHHH--------HhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhc
Q ss_pred ----CCchhHHHHHHHHHHHHhcCCCCCchhhhh-HHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhh
Q 009148 298 ----HVYNTLQTRLTKTLLNALLDPKRALTQHYG-AVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHE 372 (542)
Q Consensus 298 ----~~y~~L~~RI~~tL~k~llDp~ksl~t~YG-AI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~e 372 (542)
....---.-++++|.+.|. +.++..|+. ++..+..+=..-=..+ +|+|+.+...+-..+ +..+...+..
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~--D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i---~~~~~~~~e~ 147 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILR--DPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVI---RTCPDSLREF 147 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHH---HhCCHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 009148 373 AWRVYGALLQAAG 385 (542)
Q Consensus 373 a~~v~gaLl~a~g 385 (542)
..+-.+.|+.-++
T Consensus 148 ~~~qL~~lv~ivk 160 (160)
T PF11865_consen 148 YFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHhC
No 132
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.82 E-value=67 Score=36.03 Aligned_cols=57 Identities=21% Similarity=0.154 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++..|+ .++++++..|++-.+--+|.+++..-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~It~~~V~~~l 241 (486)
T PRK14953 185 EYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHh
Confidence 367778888998 59999999999999988998888887776665 5579999998887
No 133
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=38.09 E-value=1.9e+02 Score=25.37 Aligned_cols=82 Identities=20% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhh
Q 009148 288 LVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNE 367 (542)
Q Consensus 288 lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~ 367 (542)
-|+.++.-.+..-..-...|+.-.++.|.|++ ...+|=|.-+|..+ .++.+..++|++..++..|-....+ .+.
T Consensus 9 ~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d--~rVRy~AcEaL~ni-~k~~~~~~l~~f~~IF~~L~kl~~D---~d~ 82 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLDEILPPVLKCFDDQD--SRVRYYACEALYNI-SKVARGEILPYFNEIFDALCKLSAD---PDE 82 (97)
T ss_pred HHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcC---Cch
Confidence 35556555555555566677777788887644 45689899988888 4667778899999999988775543 334
Q ss_pred hhhhhHHH
Q 009148 368 VKRHEAWR 375 (542)
Q Consensus 368 ~~r~ea~~ 375 (542)
.+|..|+-
T Consensus 83 ~Vr~~a~~ 90 (97)
T PF12755_consen 83 NVRSAAEL 90 (97)
T ss_pred hHHHHHHH
Confidence 45555543
No 134
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=37.87 E-value=5.7e+02 Score=31.69 Aligned_cols=147 Identities=17% Similarity=0.287 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Q 009148 228 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRL 307 (542)
Q Consensus 228 nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI 307 (542)
+...++..++++.+++.--.-.+..|+..++|.+..- |+....+|=+||++.-+-+....+|+-....-.-+.|
T Consensus 226 q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y------~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei 299 (1233)
T KOG1824|consen 226 QMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY------CNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEI 299 (1233)
T ss_pred chHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH------hcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHH
Confidence 4677888899999999999999999999999988854 3334567779999999999999999887776777888
Q ss_pred HHHHHHHhc-CCCCCchh-------------------------------hhhHHHHHHhhCHHHHHHhhccC---hHHHH
Q 009148 308 TKTLLNALL-DPKRALTQ-------------------------------HYGAVQGLAALGPNVVRLLLLPN---LGPYL 352 (542)
Q Consensus 308 ~~tL~k~ll-Dp~ksl~t-------------------------------~YGAI~GL~aLG~~aVr~lilP~---L~~y~ 352 (542)
++.+++.+. ||+-...+ +=-|..++.+ +|.-+ |+.++
T Consensus 300 ~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a--------~IsSR~E~L~~~~ 371 (1233)
T KOG1824|consen 300 INLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEA--------VISSRLEMLPDFY 371 (1233)
T ss_pred HHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHH--------HHhccHHHHHHHH
Confidence 888888874 66644333 3334444433 33222 33344
Q ss_pred HhhhHhHhhh-hhhhhhhhhhHHHHHHHHHHHHHHHH
Q 009148 353 SLLEPEMLLE-KQKNEVKRHEAWRVYGALLQAAGQCI 388 (542)
Q Consensus 353 ~~Le~~l~~~-~~~~~~~r~ea~~v~gaLl~a~g~~~ 388 (542)
..+-|.+-.. +...+.++.|..++|-+|++-.+.+.
T Consensus 372 q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 372 QTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred HHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 4444444332 23345688899999998887665443
No 135
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.79 E-value=1.8e+02 Score=28.42 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMR 49 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmr 49 (542)
.||-.-+.-..+..|+.-.+..+.+.|+-.....+..|.++|-.+.|
T Consensus 88 liPd~v~DYyl~k~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsr 134 (197)
T COG5162 88 LIPDSVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSR 134 (197)
T ss_pred CccHHHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778999997666677777777777777777777766654
No 136
>PRK08727 hypothetical protein; Validated
Probab=36.86 E-value=1e+02 Score=30.70 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREI---MQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreI---iqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++..|+.-|+ .+++++...|++..+--++.+ ++.....+...+| ++|.+.+...|..
T Consensus 171 L~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~~ 230 (233)
T PRK08727 171 LRERAQRRGL-ALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHhh
Confidence 4445555688 599999999999988444444 7666655555565 7999999988754
No 137
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.66 E-value=76 Score=37.98 Aligned_cols=105 Identities=19% Similarity=0.305 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhcCCCCCchhhh-----hHHHHH-HhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHH
Q 009148 301 NTLQTRLTKTLLNALLDPKRALTQHY-----GAVQGL-AALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAW 374 (542)
Q Consensus 301 ~~L~~RI~~tL~k~llDp~ksl~t~Y-----GAI~GL-~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~ 374 (542)
+.+-++++..+.++-.+|++|-.+|| |++.-- ..-|+.+|-.+..--++.+-.-+...+. .--.-+.
T Consensus 588 ~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~-------EfiPYvf 660 (960)
T KOG1992|consen 588 PELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQ-------EFIPYVF 660 (960)
T ss_pred hHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 56677788888888899999999999 333322 2236555554433222222222211111 1222356
Q ss_pred HHHHHHHHHHHH-HHHHhhhcCCCCCCCCcchhhcccCcccc
Q 009148 375 RVYGALLQAAGQ-CIYDRLKIFPPLSSLPARSVWKTNGIVAT 415 (542)
Q Consensus 375 ~v~gaLl~a~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (542)
++.+.|+...+. +-.+.-..+|.+++| ++|+++|+|-.
T Consensus 661 Qlla~lve~~~~~ip~~~~~l~~~lLsp---~lW~r~gNipa 699 (960)
T KOG1992|consen 661 QLLAVLVEHSSGTIPDSYSPLFPPLLSP---NLWKRSGNIPA 699 (960)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHhcCH---HHHhhcCCcHH
Confidence 667766666544 555666778888877 78999999753
No 138
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=35.64 E-value=1.2e+02 Score=26.36 Aligned_cols=67 Identities=21% Similarity=0.154 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccCh
Q 009148 278 HWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNL 348 (542)
Q Consensus 278 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L 348 (542)
--.+|-.+=..|..++++.+ .-..-.++|+..++..+.|+. -..+..||.||.+|+..-=+. ++|.|
T Consensus 16 ~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~D--syVYL~aI~~L~~La~~~p~~-vl~~L 82 (92)
T PF10363_consen 16 LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDED--SYVYLNAIKGLAALADRHPDE-VLPIL 82 (92)
T ss_pred CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHHHHChHH-HHHHH
Confidence 34689999999999999888 333456899999999998764 345569999999997654332 34443
No 139
>PRK06620 hypothetical protein; Validated
Probab=34.72 E-value=90 Score=30.90 Aligned_cols=57 Identities=14% Similarity=0.039 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKC---MRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kf---mrhskR~~Lt~~DI~~AL~ 66 (542)
-++..++.-|+ .+++|++..|++..+--+|++..---+. +...+ +.+|...++.+|+
T Consensus 155 ~l~k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~ 214 (214)
T PRK06620 155 LIFKHFSISSV-TISRQIIDFLLVNLPREYSKIIEILENINYFALISK-RKITISLVKEVLN 214 (214)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhC
Confidence 45666777788 5999999999999887777665544443 23334 4699998888763
No 140
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.60 E-value=99 Score=34.61 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.++.+++.-|+ .++++++..|++-..--+|.++..--+....+. ..+|.+||..++..
T Consensus 184 ~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It~e~V~~~l~~ 241 (472)
T PRK14962 184 RLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKITLETVHEALGL 241 (472)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHcC
Confidence 45667777788 599999999999877777766666555544443 34999999998854
No 141
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=34.50 E-value=91 Score=35.28 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSR--RTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk--R~~Lt~~DI~~AL~~ 67 (542)
+.++.+++.-|+. ++++++..|++..+--+|.++++--+...++. +..+|.+||+..+-.
T Consensus 194 ~~L~~i~~~egi~-ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~ 255 (507)
T PRK06645 194 KLLEYITKQENLK-TDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGL 255 (507)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCC
Confidence 3567788888984 89999999999998888988888877766654 457999999987744
No 142
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.40 E-value=1.8e+02 Score=37.33 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=69.5
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhc-CCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~-Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
-+.|-|++-+.. .+..-.....-...+.++++.+- |.+++-+.-...|--. +-|++ .|++.+.|+.||.
T Consensus 1522 ~l~~e~l~~l~~-~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l-~~s~l--------~D~~i~vre~Aa~ 1591 (1710)
T KOG1851|consen 1522 HLQPEFLRDLKM-LTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKL-LESLL--------NDDQIEVREEAAK 1591 (1710)
T ss_pred hhHHHHHHHHHH-HhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH-HHHHH--------cchHHHHHHHHHH
Confidence 355666666654 22322334444446777776553 3333233333222221 11111 3566789999999
Q ss_pred HHHHHH-HHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 288 LVAAIC-KRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 288 lL~~I~-~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
+|+-+. -.|....+ +..++..+.+..+.++.....||+-||+|+
T Consensus 1592 ~Lsgl~~~s~~~~~~----~k~d~~~~~~~s~s~~~i~~HgavlgLgA~ 1636 (1710)
T KOG1851|consen 1592 CLSGLLQGSKFQFVS----DKRDTTSNILQSKSKDEIKAHGAVLGLGAI 1636 (1710)
T ss_pred HHHHHHhccccccch----HhhhhhhhhhhhcchHHHHhhhhHHHHHHH
Confidence 988754 45555444 677788888888888999999999999997
No 143
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=33.99 E-value=1.6e+02 Score=28.29 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEY---RIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEy---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
++..++..|+ .+++++.+.|+..... -++++++++-.+++..+ ++++.+.++..|+
T Consensus 168 l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~~ 226 (226)
T TIGR03420 168 LQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAK-RKITIPFVKEVLA 226 (226)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhC
Confidence 3445557788 4999999999997553 56777888888777766 4699999888763
No 144
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=33.17 E-value=6.4e+02 Score=27.09 Aligned_cols=184 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccC-----CCHHHHHHHHHHHHHhhcCCCC--cc
Q 009148 178 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL-----NNYSLLFALMRVVWNLLQNPHI--QI 250 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl-----~nl~~L~~lmrmv~ALl~Np~L--~L 250 (542)
|..+..++-..++ +.....++.-++.|++||...+.... .+.......+|+.-.++.||.| .|
T Consensus 14 Y~~l~~~l~~~~~----------~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l 83 (372)
T PF12231_consen 14 YMTLNNALKAYDN----------LPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTL 83 (372)
T ss_pred HHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhC
Q ss_pred ccchhh-HHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH-HHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhh
Q 009148 251 EPYLHQ-LMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAIC-KRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYG 327 (542)
Q Consensus 251 epYLHq-LlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~-~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YG 327 (542)
..=... ++--.+.++...... ..-+...|--|. .+|+..+ +.-++..+-+.+..+.++-.+....+.
T Consensus 84 ~~d~~~~~i~~~i~~l~~~~~~----------K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~e 153 (372)
T PF12231_consen 84 SDDFASFIIDHSIESLQNPNSP----------KSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISE 153 (372)
T ss_pred ChHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHH
Q ss_pred HHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 009148 328 AVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 328 AI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
++..+..|-.+.-.. ...+...+...|-+.+.. .....|..|..+...+..++|
T Consensus 154 rL~i~~~ll~q~p~~-M~~~~~~W~~~l~~~l~~---~~k~ir~~a~~l~~~~~~~l~ 207 (372)
T PF12231_consen 154 RLNIYKRLLSQFPQQ-MIKHADIWFPILFPDLLS---SAKDIRTKAISLLLEAKKCLG 207 (372)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHhC
No 145
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=32.99 E-value=1.9e+02 Score=29.45 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEY---RIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEy---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
-++..|+..++ .++++++..|++...- .+..++..+..++...+..+++.+++..++...
T Consensus 167 il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 167 IVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 34556667778 5999999999987653 344455555555555555779999999999873
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.17 E-value=75 Score=36.87 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHS----RRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhs----kR~~Lt~~DI~~AL 65 (542)
.++.+++.-|++ ++++++..|++-+.-.++.++.+.-|.+-.+ .++.+|.+||...+
T Consensus 194 ~L~~i~~~egi~-I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 194 QLQMICRAEGIQ-IDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 566777778984 9999999999999999999999988887775 36789999987766
No 147
>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases. Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.
Probab=32.02 E-value=1.8e+02 Score=28.56 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhc----------cCCCHHHHHHHHHH
Q 009148 169 ILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSR----------GLNNYSLLFALMRV 238 (542)
Q Consensus 169 ~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~----------nl~nl~~L~~lmrm 238 (542)
.++.+.+.+|+++.+.+....+-..++.++++.. .-.+.+||+.-|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~---~~~p~IP~lg~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i~~~ 194 (237)
T cd00155 118 VLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVG---PNPPCVPFLGVYLKDLTFLHEGNPDFLEGNLVNFEKRRKIAEI 194 (237)
T ss_pred HCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcC---CCCCCeeehhHHHHHHHHHHccCCccCcCCCccHHHHHHHHHH
Confidence 4778889999999998865445445677777664 1237788888888773321 33466666666666
Q ss_pred HHHhhc
Q 009148 239 VWNLLQ 244 (542)
Q Consensus 239 v~ALl~ 244 (542)
++.+..
T Consensus 195 i~~~~~ 200 (237)
T cd00155 195 LREIRQ 200 (237)
T ss_pred HHHHHH
Confidence 655543
No 148
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=31.35 E-value=2e+02 Score=28.39 Aligned_cols=91 Identities=16% Similarity=0.352 Sum_probs=60.2
Q ss_pred CCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHh-hcCCCC--ccccchhhHHHHHHHHHhcccc--CCCCC-Ccc
Q 009148 205 SGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL-LQNPHI--QIEPYLHQLMPSVVTCLVAKRL--GNRLA-DNH 278 (542)
Q Consensus 205 ~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~AL-l~Np~L--~LepYLHqLlPsvLTCll~k~l--~~~~~-~~h 278 (542)
..+-+++|-++.-|-..+ |-+|.......|++++.| ...+.+ .|-||+.||+| ++.....++. |.... ...
T Consensus 72 ~kilPvlPqLI~plk~AL--~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp-~ln~f~~k~~n~gd~i~y~~~ 148 (183)
T PF10274_consen 72 EKILPVLPQLIIPLKRAL--NTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLP-VLNLFKNKNVNLGDGIDYRKR 148 (183)
T ss_pred hHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHHHHhcccCCCcccccccc
Confidence 335566666665554444 336888888899999888 445555 78999999998 4444444442 22111 244
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 009148 279 WELRDFTAKLVAAICKRYGH 298 (542)
Q Consensus 279 w~LRd~AA~lL~~I~~k~~~ 298 (542)
=.++|.-..+|..+.+.-|.
T Consensus 149 ~~~~dlI~etL~~lE~~GG~ 168 (183)
T PF10274_consen 149 KNLGDLIQETLELLERNGGP 168 (183)
T ss_pred cchhHHHHHHHHHHHHhcCh
Confidence 57889888888887777664
No 149
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=31.24 E-value=1.2e+02 Score=31.25 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=40.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRT 54 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~ 54 (542)
-|..+.+-+|. +++.|-...-|+.+|.+++++.+...+-++|-+|+
T Consensus 192 vve~lnk~~~l-~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~ 237 (244)
T COG1938 192 VVEALNKMLGL-NVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVERE 237 (244)
T ss_pred HHHHHHHHhcC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 36677888999 69999999999999999999999999999886654
No 150
>COG4996 Predicted phosphatase [General function prediction only]
Probab=31.19 E-value=40 Score=32.00 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHhCC--CccCHHHHHHHHH---hcCCCCCccCCCCCCcceee-----------c-----CCCCce
Q 009148 35 YRIREIMQEAIKCMRHSRR--TTLTTDDVDEALK---LRNVEPVYGFASGGPLRFRR-----------A-----IGYRDL 93 (542)
Q Consensus 35 yrlreIiqeA~kfmrhskR--~~Lt~~DI~~AL~---~~nvEPLyGy~s~~pl~F~~-----------a-----~g~~~l 93 (542)
-++..=+.+-.+++|+++- +..+.++-+.|++ .+++...|-|---+|.+++. + ..++++
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~I 119 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEI 119 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhhhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceE
Confidence 3455556777788888886 4677777776554 56777777775545544432 1 345889
Q ss_pred eeecCcccCHHHHhh
Q 009148 94 FYLDDKDVEFKDVIE 108 (542)
Q Consensus 94 yy~eDkeVdL~~ii~ 108 (542)
.|++|+++-|.+|-+
T Consensus 120 vy~DDR~iH~~~Iwe 134 (164)
T COG4996 120 VYLDDRRIHFGNIWE 134 (164)
T ss_pred EEEecccccHHHHHH
Confidence 999999999999855
No 151
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.03 E-value=1e+02 Score=34.71 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++.-|++ ++++++..|++-..-.+|.++.+.-++... .+++|.+||..++
T Consensus 182 ~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~V~~~l 237 (504)
T PRK14963 182 GKLRRLLEAEGRE-AEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQVEEAL 237 (504)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH
Confidence 3467778888995 899999999999999999998888777654 4579999998876
No 152
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=30.69 E-value=4.6e+02 Score=27.00 Aligned_cols=88 Identities=18% Similarity=0.227 Sum_probs=56.2
Q ss_pred HHHhh-cCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc------hhHHHHHHHHH
Q 009148 239 VWNLL-QNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY------NTLQTRLTKTL 311 (542)
Q Consensus 239 v~ALl-~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y------~~L~~RI~~tL 311 (542)
.+.+. +-.+=.++.+++.++|++|+.+ .|..-..|-.+..+|.+++.+....- .++-.=+.+.+
T Consensus 101 ~w~v~~~~~~~~i~~~~~liiP~iL~ll---------DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 101 SWIVLSQLDRPWISQHWPLIIPPILNLL---------DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHHHHhcCCcchHHHhhhHHHhhHHHHh---------cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 33444 4455578899999999999875 23355789999999999998766433 23333344444
Q ss_pred HHHhc------CCCC---CchhhhhHHHHHHhh
Q 009148 312 LNALL------DPKR---ALTQHYGAVQGLAAL 335 (542)
Q Consensus 312 ~k~ll------Dp~k---sl~t~YGAI~GL~aL 335 (542)
.+.+. .... -+...|.++..|...
T Consensus 172 ~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~ 204 (282)
T PF10521_consen 172 FPCLYYLPPITPEDESLELLQAAYPALLSLLKT 204 (282)
T ss_pred HHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence 44443 1112 255668888877553
No 153
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=30.34 E-value=2.5e+02 Score=29.29 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 20 NFSTDAALALAPDVE------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 20 ~Lsdeaa~~La~dVE------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.+++++...++.-+. .++.++++.|...+...++.++|.+||..|+...
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 378888887777654 2455677788888877778899999999999876
No 154
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=30.22 E-value=1.4e+02 Score=32.25 Aligned_cols=58 Identities=17% Similarity=0.256 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIRE---IMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre---IiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
-++..++..|+ .++++++..||+.++--+|+ ++.....++...+ +.+|.+.++.+|+.
T Consensus 276 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 276 ILQKKAEEEGL-ELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 45677777888 49999999999998866665 4445445555544 45999999999864
No 155
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.97 E-value=4.6e+02 Score=27.05 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=69.9
Q ss_pred CcHHHHHHHHHHhh-------hcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHH
Q 009148 189 SDSVLFKQALVSLA-------TDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSV 261 (542)
Q Consensus 189 ~d~~~~~~AL~sL~-------tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsv 261 (542)
+|...|.+|++-|. .|.=-.+=+-.++.|+.+ .+.|...+...++-+.||+..+++.-+- ...++-.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~----rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~i~~~l 85 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCS----RLDDHACVQPALKGLLALVKMKNFSPES-AVKILRSL 85 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHH----HhccHhhHHHHHHHHHHHHhCcCCChhh-HHHHHHHH
Confidence 45556766654433 332222334445555554 4567777777789999999887754443 33333333
Q ss_pred HHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC
Q 009148 262 VTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRA 321 (542)
Q Consensus 262 LTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ks 321 (542)
...+ ++...--.-|...=+++..+..+|.....++-.-.+..+.+..-.++-|
T Consensus 86 ~~~~-------~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDP 138 (262)
T PF14500_consen 86 FQNV-------DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDP 138 (262)
T ss_pred HHhC-------ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCH
Confidence 3221 1111223558888888888888887666666666777777765544433
No 156
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=29.88 E-value=1.2e+02 Score=33.65 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+|+.-|++ ++++++..|+..+.--+|.++.+.-+..--.. ++++.+||..++
T Consensus 188 ~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 188 KLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLYDYVVGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCcCHHHHHHHH
Confidence 445666677885 89999999999998888888888776653333 448888887766
No 157
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=29.58 E-value=2.2e+02 Score=29.68 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEY---RIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEy---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-++..++..|+. ++++++..|++...- .+..+++.+..++...+..+++.+++..+++..++
T Consensus 188 il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~ 252 (328)
T PRK00080 188 IVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGV 252 (328)
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 456677777884 999999999987754 34455555555554445568999999999977543
No 158
>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases.
Probab=29.35 E-value=2.1e+02 Score=28.37 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=47.6
Q ss_pred cccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhc----------cCCCHHHHHHHHHH
Q 009148 169 ILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSR----------GLNNYSLLFALMRV 238 (542)
Q Consensus 169 ~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~----------nl~nl~~L~~lmrm 238 (542)
.|+.+....|+++.+.+....+-..+++++.+... .+.+||+--|+.+-+.. .+-|+..+..+.++
T Consensus 118 ~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~----~p~IP~lg~~l~dl~~~~~~~~~~~~~~~iNf~k~~~i~~~ 193 (242)
T smart00147 118 KLPSKYKKLFEELEELLSPERNFKNYREALSSCNL----PPCVPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRKIAEI 193 (242)
T ss_pred HCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC----CCCccchHHHHHHHHHHHccCcccccCCcccHHHHHHHHHH
Confidence 47888889999988887554444445666665532 68999999888774322 22367777776666
Q ss_pred HHHhh
Q 009148 239 VWNLL 243 (542)
Q Consensus 239 v~ALl 243 (542)
++.+.
T Consensus 194 i~~~~ 198 (242)
T smart00147 194 LREIR 198 (242)
T ss_pred HHHHH
Confidence 65554
No 159
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=29.32 E-value=1.9e+02 Score=34.76 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=70.5
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 355 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 355 (542)
+..=..|.-.|+..+.+++.+|- +.| .-|++++-..+||....--.|.....++--.=+. ++|||+...+-|
T Consensus 487 n~deYVRnttarafavvasalgi--p~l-----lpfLkavc~SkkSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii 558 (1172)
T KOG0213|consen 487 NKDEYVRNTTARAFAVVASALGI--PAL-----LPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKII 558 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHHhCc--HHH-----HHHHHHHhccccchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHH
Confidence 34568999999999999999984 433 3467777777777766665555555554433333 799999999999
Q ss_pred hHhHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 009148 356 EPEMLLEKQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 356 e~~l~~~~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
+..+.++.+ -+|..+.....+|-.|++
T Consensus 559 ~~gl~De~q---kVR~itAlalsalaeaa~ 585 (1172)
T KOG0213|consen 559 EHGLKDEQQ---KVRTITALALSALAEAAT 585 (1172)
T ss_pred HHhhcccch---hhhhHHHHHHHHHHHhcC
Confidence 998877643 366777777777766654
No 160
>PRK08084 DNA replication initiation factor; Provisional
Probab=29.30 E-value=1.7e+02 Score=29.09 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCccCHHHHHHHHH
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRH--SRRTTLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrh--skR~~Lt~~DI~~AL~ 66 (542)
++..|+.-|+ .+++|++..|++..+--+|++..---+..+. .+.+++|.+-++.+|.
T Consensus 176 l~~~a~~~~~-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 176 LQLRARLRGF-ELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 4444555688 5999999999999997666665554444433 2335599998888875
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.89 E-value=77 Score=36.64 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
..++.+|+.-|+ .++++++..|++-+.-.++.++.+.-+..-.++++ +|.++|...+
T Consensus 187 ~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-It~~~V~~~l 243 (614)
T PRK14971 187 NHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-ITYKSVIENL 243 (614)
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-ccHHHHHHHh
Confidence 356777888899 49999999999999988999998887776666554 8887776554
No 162
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.83 E-value=2.9e+02 Score=33.13 Aligned_cols=174 Identities=14% Similarity=0.118 Sum_probs=100.7
Q ss_pred ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhh-HHHHHHHHHhcccc-CCCC-CCccHHHHH
Q 009148 207 LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQ-LMPSVVTCLVAKRL-GNRL-ADNHWELRD 283 (542)
Q Consensus 207 L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHq-LlPsvLTCll~k~l-~~~~-~~~hw~LRd 283 (542)
+++.+|.++.-.++....+.+ ..-..+-|++.-+. +.-.|+ +++++++|++.-.- +++- .+..|++=-
T Consensus 404 V~qalp~ii~lm~D~sl~Vkd--TaAwtlgrI~d~l~-------e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~ 474 (859)
T KOG1241|consen 404 VIQALPSIINLMSDPSLWVKD--TAAWTLGRIADFLP-------EAIINQELLQSKLSALLEGLNDEPRVASNVCWAFIS 474 (859)
T ss_pred HhhhhHHHHHHhcCchhhhcc--hHHHHHHHHHhhch-------hhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHH
Confidence 444555554444432222221 22334556665544 444443 45567777655432 2222 356788877
Q ss_pred HHHHHHHHHHHH-hCCCchhHHHHHHHHHHHHhc--C--CCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHh
Q 009148 284 FTAKLVAAICKR-YGHVYNTLQTRLTKTLLNALL--D--PKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPE 358 (542)
Q Consensus 284 ~AA~lL~~I~~k-~~~~y~~L~~RI~~tL~k~ll--D--p~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~ 358 (542)
+|-.+=...... -+..+..-..-|+..|+++=- | .+..-++.|-|+.-|....++.+-..+.-....++.+|+..
T Consensus 475 Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~ 554 (859)
T KOG1241|consen 475 LAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQT 554 (859)
T ss_pred HHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 775544333333 111222345567777777632 1 23447789999999999999999998888888889999888
Q ss_pred HhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 009148 359 MLLEKQKNEVKRHEAWRVYGALLQAAGQCIYD 390 (542)
Q Consensus 359 l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~~ 390 (542)
+... ..+...|.--.-+.+.|+.-++..++.
T Consensus 555 i~~~-~l~~~dr~q~~eLQs~Lc~~Lq~i~rk 585 (859)
T KOG1241|consen 555 ISSQ-ILSLADRAQLNELQSLLCNTLQSIIRK 585 (859)
T ss_pred HHHH-hccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8722 222335555556666666666555543
No 163
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=28.81 E-value=5.1e+02 Score=24.53 Aligned_cols=78 Identities=18% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh-----CH-HHHHHhhccChHHH
Q 009148 279 WELRDFTAKLVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL-----GP-NVVRLLLLPNLGPY 351 (542)
Q Consensus 279 w~LRd~AA~lL~~I~~k~~~-~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL-----G~-~aVr~lilP~L~~y 351 (542)
..=|-.+..++..+|+.++. .+-.-....++.+++.+.. ..+..+...|+..|..+ |. +-.|....|+++.+
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 34577888889888888642 1212233455666666665 45566777888877765 32 45788899999999
Q ss_pred HHhhhH
Q 009148 352 LSLLEP 357 (542)
Q Consensus 352 ~~~Le~ 357 (542)
...+-+
T Consensus 118 i~~ll~ 123 (165)
T PF08167_consen 118 IQSLLQ 123 (165)
T ss_pred HHHHHH
Confidence 876654
No 164
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=28.58 E-value=5e+02 Score=31.42 Aligned_cols=102 Identities=24% Similarity=0.296 Sum_probs=65.4
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhcCCCCCch---hhhhHHHHHHhhCHHHHHHhhccChHH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVY--NTLQTRLTKTLLNALLDPKRALT---QHYGAVQGLAALGPNVVRLLLLPNLGP 350 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y--~~L~~RI~~tL~k~llDp~ksl~---t~YGAI~GL~aLG~~aVr~lilP~L~~ 350 (542)
++.=.-|...+.++..|..+-|... ..|-.|+++-++-+|...+..-. .-+|+|+ .+||.. +-|+++.
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~--~~lg~r-----~kpylpq 799 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVV--NALGGR-----VKPYLPQ 799 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHH--HHHhhc-----cccchHH
Confidence 4556789999999999999987665 67888999999999986655544 5566665 344443 3578888
Q ss_pred HHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 009148 351 YLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 387 (542)
Q Consensus 351 y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~ 387 (542)
+...+-..|... ....|..|....+.|-..+-+|
T Consensus 800 i~stiL~rLnnk---sa~vRqqaadlis~la~Vlktc 833 (1172)
T KOG0213|consen 800 ICSTILWRLNNK---SAKVRQQAADLISSLAKVLKTC 833 (1172)
T ss_pred HHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhc
Confidence 877766555421 1223444444444443333333
No 165
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.13 E-value=1.1e+03 Score=28.40 Aligned_cols=174 Identities=17% Similarity=0.269 Sum_probs=101.1
Q ss_pred HhhhcCCccccchhHHHHHHHHhhc------cCCCHHH--HHHHHHHHHHhhcCCCCccccchhhHHHHHHH----HHhc
Q 009148 200 SLATDSGLHPLVPYFTYFVADEVSR------GLNNYSL--LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVT----CLVA 267 (542)
Q Consensus 200 sL~tD~gL~qLLPYfv~FI~e~V~~------nl~nl~~--L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLT----Cll~ 267 (542)
...+.+.=.+.-|||-.-|..-+.. |-+|+.. -..||.|| .|-.-..-+-+.++.+-++. |+=+
T Consensus 482 A~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElI----k~st~~vy~~v~~~~l~il~kl~q~i~~ 557 (859)
T KOG1241|consen 482 AAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELI----KNSTDDVYPMVQKLTLVILEKLDQTISS 557 (859)
T ss_pred hccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433344557776666553332 2344433 22355554 45544444445555544443 3333
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCC---chhhhhHHHHHHh-hCHHHHHHh
Q 009148 268 KRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRA---LTQHYGAVQGLAA-LGPNVVRLL 343 (542)
Q Consensus 268 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ks---l~t~YGAI~GL~a-LG~~aVr~l 343 (542)
..++....+.+-.|.+.=...|..|.+|+++.....--.|+..|++.|-. .++ -...+|||.+|.+ ||.
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~------ 630 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGK------ 630 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhH------
Confidence 33443333456677777778899999999999999999999999999976 344 3455788888776 353
Q ss_pred hccChHHHHHhhhHhHhhhh--hhhhhhhhhHHHHHHHHHHHHHHH
Q 009148 344 LLPNLGPYLSLLEPEMLLEK--QKNEVKRHEAWRVYGALLQAAGQC 387 (542)
Q Consensus 344 ilP~L~~y~~~Le~~l~~~~--~~~~~~r~ea~~v~gaLl~a~g~~ 387 (542)
++..|...+.|.|...- ..+.++-.-|.-+.|=|.+|++.-
T Consensus 631 ---~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~ 673 (859)
T KOG1241|consen 631 ---GFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDD 673 (859)
T ss_pred ---hHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555554331 112234445555666666665543
No 166
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=28.10 E-value=86 Score=35.92 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=76.9
Q ss_pred hhcCCcccc--chhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccc--------cC
Q 009148 202 ATDSGLHPL--VPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKR--------LG 271 (542)
Q Consensus 202 ~tD~gL~qL--LPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~--------l~ 271 (542)
..-||+.-. =||+.+|+-+....++. .+.++++++|-..|-+++-.-+-.++ --.+-++. |+
T Consensus 162 k~q~~lsk~v~~k~l~~~~fesflk~l~-----fr~levle~ls~d~i~~Vk~qvv~~V---ydLL~a~peqe~nLl~L~ 233 (821)
T COG5593 162 KNQPGLSKEVQNKYLKQRIFESFLKNLR-----FRVLEVLEVLSHDPIQYVKKQVVRLV---YDLLEARPEQEVNLLHLF 233 (821)
T ss_pred hcCcchhhhhcchHHHHHHHHHHHHHHH-----HHHHHHHHHhccchHHHHHHHHHHHH---HHHHhcChHHHHHHHHHH
Confidence 344555322 27888888887766543 34666677776666555443322222 22221220 11
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 272 NRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 272 ~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
.|- -=..|+.-|.--++++-+--...|+++.=|++-.-...+.|+..+.+.|=|++.|...
T Consensus 234 INK---lGDk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt 294 (821)
T COG5593 234 INK---LGDKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQT 294 (821)
T ss_pred HHh---hccchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHH
Confidence 110 0123666666666677777777899999999999999999999999999999988754
No 167
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=28.10 E-value=6.5e+02 Score=27.34 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCC--CCCccH---HHHHHHHHHHHHHHHHhCCCchh
Q 009148 228 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNR--LADNHW---ELRDFTAKLVAAICKRYGHVYNT 302 (542)
Q Consensus 228 nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~--~~~~hw---~LRd~AA~lL~~I~~k~~~~y~~ 302 (542)
|++.+.+++.=.-..|+|.+|+...-+.+|.-.+...+-.+....+ ...... ++....-..|+.++.-+..-..+
T Consensus 155 dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k~ 234 (356)
T PF03542_consen 155 DWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSKQ 234 (356)
T ss_pred CcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCHh
Confidence 5566666666666777777777765566665544443322221111 112333 34444445566677666665677
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH--HHHHHhhccChHHHHHhhhH
Q 009148 303 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP--NVVRLLLLPNLGPYLSLLEP 357 (542)
Q Consensus 303 L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~--~aVr~lilP~L~~y~~~Le~ 357 (542)
-+..|+++|...+.. +. |..++.+|-- .-+...+.+.|+.++.++..
T Consensus 235 ~qd~iV~~l~~GL~s-~~-------a~~CI~aLtic~~EmP~s~~k~L~~iL~kLs~ 283 (356)
T PF03542_consen 235 EQDEIVRALESGLGS-KT-------AKPCIHALTICCYEMPDSMKKLLPSILLKLSK 283 (356)
T ss_pred HHHHHHHHHHHHhcc-Cc-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 788999999888764 22 3333333322 12234455667777766544
No 168
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=27.34 E-value=2.3e+02 Score=33.14 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 9 VEVIAQSI----GISNFSTDAALALAPDVE-------------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~----Gi~~Lsdeaa~~La~dVE-------------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
++.+++.+ ++..++++|...|.+.-. ..|.+++++|..+++..+++.++.+||..|++
T Consensus 324 ~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 324 VRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 44556555 355789999888877554 24566999999999999999999999999974
No 169
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=27.30 E-value=3.1e+02 Score=23.66 Aligned_cols=44 Identities=14% Similarity=0.383 Sum_probs=33.0
Q ss_pred cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHH
Q 009148 252 PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQ 304 (542)
Q Consensus 252 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~ 304 (542)
.|.|.++-.+|+|.+.+. . .-|++.+.++..+|++--.+-..++
T Consensus 32 ~~~~~vv~~~i~~~le~~--~-------~~~~~~~~Ll~~L~~~~~~~~~~~~ 75 (113)
T smart00544 32 EQHHEVVKVLLTCALEEK--R-------TYREMYSVLLSRLCQANVISTKQFE 75 (113)
T ss_pred cchHHHHHHHHHHHHcCC--c-------cHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 488999999999998772 1 3499999999999977543333333
No 170
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.84 E-value=1.5e+02 Score=33.50 Aligned_cols=61 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.++.+++.-|+. ++++++..|++-..-.+|.++...-+..-.+ +.++|.+||...+-...-
T Consensus 186 ~l~~il~~egi~-~~~~al~~ia~~s~GslR~al~lLdq~ia~~-~~~It~~~V~~~lg~~~~ 246 (509)
T PRK14958 186 HCQHLLKEENVE-FENAALDLLARAANGSVRDALSLLDQSIAYG-NGKVLIADVKTMLGTIEP 246 (509)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHHHhcC-CCCcCHHHHHHHHCCCCH
Confidence 456688888995 9999999999998888888877766655454 678999999988754443
No 171
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.67 E-value=1.4e+02 Score=34.71 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++.-|+. ++++++..|++...-.+|.+++..-+.... +.+++|.+||..++
T Consensus 186 ~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~lLeqll~~-g~~~It~d~V~~~l 241 (624)
T PRK14959 186 HLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSLLGQVLAL-GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcCHHHHHHHh
Confidence 456667778884 999999999998888888888877666644 44589999998887
No 172
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Probab=26.36 E-value=1e+02 Score=31.65 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=54.9
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
.+|.+-||.|-++= .+.-++.||.-..+...|+.|.++.-.|--...-++|+++.-.||..|+.-..
T Consensus 74 ~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~ 141 (236)
T KOG1657|consen 74 ILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSE 141 (236)
T ss_pred cCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCC
Confidence 35666666665432 23358899999999999999999999999999999999999999999986543
No 173
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.26 E-value=6e+02 Score=24.52 Aligned_cols=87 Identities=22% Similarity=0.293 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccc
Q 009148 174 LQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY 253 (542)
Q Consensus 174 lQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepY 253 (542)
.|.|.++|.+.|+..+. ..+..|++-++ --++.++-|..
T Consensus 6 ~Qryl~~Il~~~~~~~~-~vr~~Al~~l~-----------------~il~qGLvnP~----------------------- 44 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDD-SVRLAALQVLE-----------------LILRQGLVNPK----------------------- 44 (187)
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHH-----------------HHHhcCCCChH-----------------------
Confidence 58999999999987654 45555554333 23444443332
Q ss_pred hhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHh
Q 009148 254 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNAL 315 (542)
Q Consensus 254 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~l 315 (542)
+-+|.++... .+..=.+|..|-.++..++.||.. -+..|+..-...++
T Consensus 45 --~cvp~lIAL~---------ts~~~~ir~~A~~~l~~l~eK~~s---~v~~~~~~gi~~af 92 (187)
T PF12830_consen 45 --QCVPTLIALE---------TSPNPSIRSRAYQLLKELHEKHES---LVESRYSEGIRLAF 92 (187)
T ss_pred --HHHhHhhhhh---------CCCChHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH
Confidence 2334444321 122338999999999999999985 45556655555443
No 174
>PTZ00429 beta-adaptin; Provisional
Probab=26.10 E-value=1.2e+03 Score=27.95 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccC--CCHHHHHHHHHHHHHhhcCCCCccccch
Q 009148 177 YFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHIQIEPYL 254 (542)
Q Consensus 177 Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl--~nl~~L~~lmrmv~ALl~Np~L~LepYL 254 (542)
+|-.|+. ++..+|.+.++-+.--|..-...+ |-+..-....+...+ .|-..-..-+|.+-+ |.+...+
T Consensus 69 LF~dVvk-~~~S~d~elKKLvYLYL~~ya~~~---pelalLaINtl~KDl~d~Np~IRaLALRtLs~------Ir~~~i~ 138 (746)
T PTZ00429 69 LFVDVVK-LAPSTDLELKKLVYLYVLSTARLQ---PEKALLAVNTFLQDTTNSSPVVRALAVRTMMC------IRVSSVL 138 (746)
T ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHcccC---hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc------CCcHHHH
Q ss_pred hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCch--hHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009148 255 HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN--TLQTRLTKTLLNALLDPKRALTQHYGAVQGL 332 (542)
Q Consensus 255 HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~--~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL 332 (542)
-.++++|..|+ .+.+=.+|..||-.+.+|.+.+....+ ++.+++...+. ++.....+.|+..|
T Consensus 139 e~l~~~lkk~L---------~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~------D~dp~Vv~nAl~aL 203 (746)
T PTZ00429 139 EYTLEPLRRAV---------ADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN------DNNPVVASNAAAIV 203 (746)
T ss_pred HHHHHHHHHHh---------cCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc------CCCccHHHHHHHHH
Q ss_pred Hhh---CHHHHHHhhccChHHHHHhh
Q 009148 333 AAL---GPNVVRLLLLPNLGPYLSLL 355 (542)
Q Consensus 333 ~aL---G~~aVr~lilP~L~~y~~~L 355 (542)
.++ +++.+ .+..+++..++..|
T Consensus 204 ~eI~~~~~~~l-~l~~~~~~~Ll~~L 228 (746)
T PTZ00429 204 CEVNDYGSEKI-ESSNEWVNRLVYHL 228 (746)
T ss_pred HHHHHhCchhh-HHHHHHHHHHHHHh
No 175
>PRK04195 replication factor C large subunit; Provisional
Probab=25.94 E-value=1.4e+02 Score=33.15 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++.-|+. +++++...|++...--+|.++++..++. .++.+++.+||+...
T Consensus 168 ~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~~a--~~~~~it~~~v~~~~ 222 (482)
T PRK04195 168 VLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHh--cCCCCCcHHHHHHhh
Confidence 467777788995 9999999999999989999998887743 345689999988655
No 176
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.78 E-value=1.5e+02 Score=34.04 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++.-|+. ++++++..|++...-.++.++++.-|++... ..++|.+||...+
T Consensus 187 ~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~~LekL~~y~-~~~It~e~V~~ll 242 (585)
T PRK14950 187 HLRKIAAAEGIN-LEPGALEAIARAATGSMRDAENLLQQLATTY-GGEISLSQVQSLL 242 (585)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCCCHHHHHHHh
Confidence 455667777884 9999999999999888888888888877654 4579999988776
No 177
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=25.77 E-value=74 Score=35.32 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 32 DVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 32 dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
-.-.-|+.|+++|...+.+.+|..++.+|+..|++.
T Consensus 388 ~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 388 LSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 344568899999999999999999999999999976
No 178
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=25.01 E-value=1.7e+02 Score=34.64 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
+.++.+++.-|+. ++++++..|++...--+|.++...-+.+..+ ..+++.+||...+...
T Consensus 185 ~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAlnLLDqaia~g-~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 185 DHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDALSLLDQAIALG-SGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHHccc
Confidence 3467788999994 9999999999999988888887776666654 5689999999887443
No 179
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=25.01 E-value=9.1e+02 Score=26.19 Aligned_cols=168 Identities=24% Similarity=0.279 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHH---Hhhh----cCCccccchhHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhh
Q 009148 173 ELQLYFDKITELAVSRSDSVLFKQALV---SLAT----DSGLHPLVPYFTYFVADEVSRG--LNNYSLLFALMRVVWNLL 243 (542)
Q Consensus 173 ElQ~Yf~kIt~a~l~~~d~~~~~~AL~---sL~t----D~gL~qLLPYfv~FI~e~V~~n--l~nl~~L~~lmrmv~ALl 243 (542)
+.+.+.+++++.+...+++..+..+++ +|-+ +..+...+-.+..-+ .... -.....+..+.=+++||+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHH
Confidence 455688888888776665444544443 3333 222222222222222 0111 123456777788899999
Q ss_pred cCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhC---------CCchhHHHHHHHHHHHH
Q 009148 244 QNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG---------HVYNTLQTRLTKTLLNA 314 (542)
Q Consensus 244 ~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~---------~~y~~L~~RI~~tL~k~ 314 (542)
...+ |..-+++.-++.++-. ..+...||+-++.|+.-+. ..=.-=|+|++.++...
T Consensus 263 ~R~~----~~~~~~~~~L~~lL~~-----------~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~ 327 (415)
T PF12460_consen 263 MRGH----PLATELLDKLLELLSS-----------PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPK 327 (415)
T ss_pred HcCC----chHHHHHHHHHHHhCC-----------hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHH
Confidence 8776 4444455445544322 4678888888888775411 11122368888887777
Q ss_pred hcCCCCC----chhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 009148 315 LLDPKRA----LTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360 (542)
Q Consensus 315 llDp~ks----l~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 360 (542)
|.+.-++ ....| +.+|+.+=..+=..++.|+++.++..|-..+.
T Consensus 328 L~~~~~~~~~~~k~~y--L~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~ 375 (415)
T PF12460_consen 328 LLEGFKEADDEIKSNY--LTALSHLLKNVPKSVLLPELPTLLPLLLQSLS 375 (415)
T ss_pred HHHHHhhcChhhHHHH--HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC
Confidence 6543332 22333 44555544455567788999999887766664
No 180
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=24.80 E-value=1.6e+02 Score=33.61 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=43.7
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+.++.+++.-|+. ++++++..|+...+-.+|.++...-+.+..+ ..++|.+||..++
T Consensus 185 ~~L~~i~~~egi~-i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~It~~~V~~vl 241 (559)
T PRK05563 185 ERLKYILDKEGIE-YEDEALRLIARAAEGGMRDALSILDQAISFG-DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHh
Confidence 3456777888994 9999999999988877777766665555554 5679999998776
No 181
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=24.39 E-value=1.8e+02 Score=33.32 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++.-|+ .++++++..|+....-.+|.++...-+...-+ +..+|.+||...+
T Consensus 184 ~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It~~~V~~~l 239 (535)
T PRK08451 184 HLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAITESKVADML 239 (535)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCCHHHHHHHh
Confidence 45667778898 49999999999999888888888776666555 5678999888765
No 182
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=24.20 E-value=1.7e+02 Score=32.38 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEY-R---IREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEy-r---lreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
-|+.=|+.-+|. |+++|...|+..=+. - .-+++.-|..++...+++++..+||+.|-+.
T Consensus 369 Ii~iRa~ee~i~-l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 369 IIRIRAKEEDIE-LSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHHHhhhhhccc-cCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 344446778884 999999999976543 2 3466778889999999999999999999875
No 183
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=24.17 E-value=7.7e+02 Score=26.07 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=73.4
Q ss_pred ccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCc
Q 009148 170 LSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQ 249 (542)
Q Consensus 170 LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~ 249 (542)
+.-|--+|.-||..+++-.-+.+ +..+-. +...+=||...+.+ +.+-..-..+-.+...|.....++
T Consensus 30 ~~leR~~fL~kv~q~L~qhr~~E--~~Ivp~------i~~ni~y~L~~L~~-----~~~~~~~~~i~~~L~~l~~~~d~~ 96 (284)
T PF04793_consen 30 LALERGLFLLKVCQVLMQHRQSE--PFIVPK------IRSNIIYFLEELKE-----LSPGDCQEAIKEILDHLEEAGDSN 96 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh--hhHHHH------HHHHHHHHHHHHHh-----hCChhHHHHHHHHHHHHHhCCCcc
Confidence 33455579999999886542221 111111 11122233333322 222233334556666678999999
Q ss_pred cccchhhHHHHHHHHHhccc--cCCC-C--CCccH------HHHHHHHHHHHHHHHHhCCCchhHHH
Q 009148 250 IEPYLHQLMPSVVTCLVAKR--LGNR-L--ADNHW------ELRDFTAKLVAAICKRYGHVYNTLQT 305 (542)
Q Consensus 250 LepYLHqLlPsvLTCll~k~--l~~~-~--~~~hw------~LRd~AA~lL~~I~~k~~~~y~~L~~ 305 (542)
|+.+|-..+|-++.|==.-- .+.. + ..--| .+++...+.++.+++.+..+.|+++.
T Consensus 97 L~~~L~~~l~~ll~~~yP~~~~~~~~~~~~~~~~Wcl~~l~~vs~~~r~~v~~~l~~~~~smpS~~a 163 (284)
T PF04793_consen 97 LERELAKGLPKLLGCKYPHILNVWPVSPEQPYHEWCLHHLLGVSEEYRKKVSETLDDKHTSMPSFQA 163 (284)
T ss_pred hHHHHHHHHHHHHhhhCCCcCCCCccCCCCChhhHHHhhHhhcCHHHHHHHHHHHhccccccHhHHH
Confidence 99999999999998842221 2111 1 12245 56788889999999888888888883
No 184
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=23.68 E-value=3e+02 Score=32.96 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=55.8
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCC-CCCchhhhhHHHHHHhh-CHHHHHHhhccChHHH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDP-KRALTQHYGAVQGLAAL-GPNVVRLLLLPNLGPY 351 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp-~ksl~t~YGAI~GL~aL-G~~aVr~lilP~L~~y 351 (542)
+...++|+-||+.+..++.+||..+. ...++..++....++ =+.-.|.+=+|.-|+.+ |.+.....++|-+...
T Consensus 529 d~v~~Ir~~aa~~l~~l~~~~G~~w~--~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 529 DHVYSIREAAARNLPALVETFGSEWA--RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred hhHHHHHHHHHHHhHHHHHHhCcchh--HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHh
Confidence 34579999999999999999996664 334666677777766 34556677778777764 8899988888866553
No 185
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.46 E-value=2.2e+02 Score=35.43 Aligned_cols=107 Identities=17% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCcHHHHHHH-----------HHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHh
Q 009148 174 LQLYFDKITELAVSRSDSVLFKQA-----------LVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNL 242 (542)
Q Consensus 174 lQ~Yf~kIt~a~l~~~d~~~~~~A-----------L~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~AL 242 (542)
++.|+..|.+.++|. +...... ....-+|+-+++++-..+-||++.=.+ ....-+..+..+
T Consensus 783 lnefl~~Isagl~gd--~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sre------I~kaAI~fikvl 854 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGD--STRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSRE------IAKAAIGFIKVL 854 (1176)
T ss_pred HHHHHHHHHhhhccc--HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHH
Q ss_pred hcCCCC-ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhC
Q 009148 243 LQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG 297 (542)
Q Consensus 243 l~Np~L-~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~ 297 (542)
+.-=.. .+-+|+.+|||+++. +.+.... .+|-..-.||..+|++||
T Consensus 855 v~~~pe~~l~~~~~~LL~sll~--ls~d~k~-------~~r~Kvr~LlekLirkfg 901 (1176)
T KOG1248|consen 855 VYKFPEECLSPHLEELLPSLLA--LSHDHKI-------KVRKKVRLLLEKLIRKFG 901 (1176)
T ss_pred HHcCCHHHHhhhHHHHHHHHHH--HHHhhhH-------HHHHHHHHHHHHHHHHhC
No 186
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=23.27 E-value=2.9e+02 Score=28.48 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCC
Q 009148 4 VPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPV 73 (542)
Q Consensus 4 ~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPL 73 (542)
++...++.+++.+|+.....+. .|..-+..|+++|.++=.-+.+- +=..|+.+++..|...+|+.+.
T Consensus 171 Lsr~~L~~L~r~~~l~~~~~~~--~lr~rL~~~~~~l~~dD~~i~~e-Gv~~Ls~~EL~~Ac~~RGl~~~ 237 (268)
T PF07766_consen 171 LSRPHLRALCRLLGLTPFGPSS--LLRRRLRKRLRYLKQDDRLIKRE-GVDSLSEEELQDACYERGLRST 237 (268)
T ss_dssp S-HHHHHHHHHHTT----SSHH--HHHHHHHHHHHHHHHHHHHHHHH--GGGS-HHHHHHHHHHTT---T
T ss_pred CCHHHHHHHHHHhccCcCCchH--HHHHHHHHHHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHhCCCcC
Confidence 5667899999999998877554 47888999999999998887777 6689999999999999998655
No 187
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=23.05 E-value=3.4e+02 Score=24.95 Aligned_cols=95 Identities=20% Similarity=0.110 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh---CHHHHHHhhccChHHHHHhhhHhHhh
Q 009148 285 TAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL---GPNVVRLLLLPNLGPYLSLLEPEMLL 361 (542)
Q Consensus 285 AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL---G~~aVr~lilP~L~~y~~~Le~~l~~ 361 (542)
++.+|..|++-.-+ ..-.++|++.+.+.|.|..+..-..|=|+.-|..| |++.|-.-+--++..+-..-+-...+
T Consensus 18 ~~~~m~eIa~~t~~--~~~~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d 95 (123)
T cd03571 18 SGTLMAEIARATYN--YVEFQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYID 95 (123)
T ss_pred CHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeC
Confidence 35678888865322 25667999999999999999999999999998888 88765554555554443332222212
Q ss_pred hhh--hhhhhhhhHHHHHHHHH
Q 009148 362 EKQ--KNEVKRHEAWRVYGALL 381 (542)
Q Consensus 362 ~~~--~~~~~r~ea~~v~gaLl 381 (542)
+.. --..+|.-|.+|..+|.
T Consensus 96 ~~g~d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 96 ENGKDQGINVREKAKEILELLE 117 (123)
T ss_pred CCCCchhHHHHHHHHHHHHHhC
Confidence 111 11246677777776653
No 188
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=22.76 E-value=1.9e+02 Score=33.19 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.++.+++.-|+. ++++++..|++...-.+|.++.+.-+....+. .++|.+||..++..
T Consensus 186 ~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~alslLdklis~~~-~~It~e~V~~llg~ 243 (563)
T PRK06647 186 MLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYTLFDQVVSFSD-SDITLEQIRSKMGL 243 (563)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcC-CCCCHHHHHHHhCC
Confidence 456677777985 99999999999888878888777766666555 56899998877643
No 189
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=22.66 E-value=1.1e+03 Score=27.84 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=68.0
Q ss_pred HhhcCCCCccccchhhHHHHHHHHHhccccCCCC-CCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH---hc
Q 009148 241 NLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRL-ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNA---LL 316 (542)
Q Consensus 241 ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~-~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~---ll 316 (542)
|.+-||..|+-+ -+-.|++|-.-|.+- .+..|+.-.++-.+-... +...+....-.+-|++.|.++ -.
T Consensus 440 a~~i~p~~Hl~~-------~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~-~~~~S~l~~fY~ai~~~Lv~~t~~~~ 511 (858)
T COG5215 440 AMIISPCGHLVL-------EVSASLIGLMDCPFRSINCSWRKENLVDHIAKAV-REVESFLAKFYLAILNALVKGTELAL 511 (858)
T ss_pred HHhcCccccccH-------HHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhh-ccccchhHHHHHHHHHHHHHHHHhhc
Confidence 455566665543 344555554334332 356777655544332221 111212223344566666554 24
Q ss_pred CCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhh
Q 009148 317 DPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLL 361 (542)
Q Consensus 317 Dp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~ 361 (542)
+....-.+.|.|+-.|..+.+++|-..+.-.....+.+|+.-+..
T Consensus 512 Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv 556 (858)
T COG5215 512 NESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISV 556 (858)
T ss_pred cchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999999988777777777888766553
No 190
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=22.63 E-value=2.7e+02 Score=27.10 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIRE---IMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre---IiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.++.++...|+ .+++++...|+....--+++ +++.-..++...| +++|...++.+|.
T Consensus 165 ~l~~~~~~~~v-~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 165 ALKAAAAERGL-QLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 34555667898 59999999999977645555 5555444455555 5899999988874
No 191
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=22.42 E-value=1.7e+02 Score=32.14 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIRE---IMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre---IiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
-++..++..|+ .+++|++..||+.+.--+|+ ++.....++...+ +.+|.+.+..+|+..
T Consensus 288 il~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~ 349 (450)
T PRK00149 288 ILKKKAEEEGI-DLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG-KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHh
Confidence 45566666788 49999999999988866665 4444444444444 459999999999753
No 192
>COG1424 BioW Pimeloyl-CoA synthetase [Coenzyme metabolism]
Probab=22.32 E-value=97 Score=31.17 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-ccCHHHHHHHHHhcCCCCCc--cCCCCCCcceeec-----CC---CCceee
Q 009148 27 LALAPDVEYRIREIMQEAIKCMRHSRRT-TLTTDDVDEALKLRNVEPVY--GFASGGPLRFRRA-----IG---YRDLFY 95 (542)
Q Consensus 27 ~~La~dVEyrlreIiqeA~kfmrhskR~-~Lt~~DI~~AL~~~nvEPLy--Gy~s~~pl~F~~a-----~g---~~~lyy 95 (542)
..|-+++..|..+.+--|.|.-+|..=. -|.++| +|=| ||-++..+-|.+. .| +.-+||
T Consensus 144 ~~lk~~l~~R~~dAlAiaskv~~hp~VvaELC~SD----------d~dY~TGYvagkkiGY~Rit~lKe~gt~~GgRVfF 213 (239)
T COG1424 144 KNLKEDLTERTVDALAIASKVNAHPGVVAELCWSD----------DPDYTTGYVAGKKIGYHRITDLKEVGTRYGGRVFF 213 (239)
T ss_pred HhhhccchHHHHHHHHHHHhhccCcceeEEEeecC----------CCcceeeeeecceeeeEEeecccccCCccCcEEEE
Confidence 4577888889888888888887777632 344444 4544 8877776555543 11 245777
Q ss_pred ecCcccCHHHHhhc
Q 009148 96 LDDKDVEFKDVIEA 109 (542)
Q Consensus 96 ~eDkeVdL~~ii~a 109 (542)
++| .+|++++|+.
T Consensus 214 Vd~-~~dln~yI~~ 226 (239)
T COG1424 214 VDD-CIDLNHYISF 226 (239)
T ss_pred EcC-cccHHHHHHH
Confidence 765 5899999974
No 193
>PRK06893 DNA replication initiation factor; Validated
Probab=22.11 E-value=2.6e+02 Score=27.71 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREI---MQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreI---iqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
-++..|..-|+ .+++|+...|++..+--+|.+ ++.-.+.....+| ++|...|+.+|.
T Consensus 169 iL~~~a~~~~l-~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~-~it~~~v~~~L~ 228 (229)
T PRK06893 169 VLQRNAYQRGI-ELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQR-KLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHhc
Confidence 34555667788 599999999999988544443 3332222222233 699999998875
No 194
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=21.93 E-value=6e+02 Score=26.13 Aligned_cols=141 Identities=12% Similarity=0.165 Sum_probs=66.7
Q ss_pred HHHHcCCCcHHHHHHHHHHh---hhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHH
Q 009148 182 TELAVSRSDSVLFKQALVSL---ATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLM 258 (542)
Q Consensus 182 t~a~l~~~d~~~~~~AL~sL---~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLl 258 (542)
+..++...++..+..||..| +.+..=+..+=-++..+.+.+...--|...-...+|+...|- +...-|.++
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt------v~~~~~~~l 132 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT------VTNDYHHML 132 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC------CCcchhhhH
Confidence 34455556666666666544 444433333333444455544433223333345666666654 223334444
Q ss_pred HHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHh
Q 009148 259 PSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAA 334 (542)
Q Consensus 259 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~a 334 (542)
...+.+++. -+... + =..|..+-++|..+...-.....-+.......|. .|+|.+.+-....-++.-+..
T Consensus 133 ~~~i~~ll~-LL~~G---~-~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~-~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 133 ANYIPDLLS-LLSSG---S-EKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL-SLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred HhhHHHHHH-HHHcC---C-hHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH-HHHccCCccHHHHHHHHHHHH
Confidence 444444431 11110 1 1567777777777776555444445555555554 333444344434444443333
No 195
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.91 E-value=2.1e+02 Score=29.42 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHcCCCCCCH---HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 4 VPKETVEVIAQSIGISNFST---DAALALAP-------------DVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 4 ~p~e~Ik~iAes~Gi~~Lsd---eaa~~La~-------------dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+++.||-+.++.+|.+..+| ..++.|++ +....+.+++.+....+++.. +.+..++++.|..+
T Consensus 48 VS~aTv~Rf~~kLGf~Gf~efk~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~-~~l~~~~l~~av~~ 126 (281)
T COG1737 48 VSPATVVRFARKLGFEGFSEFKLALAQELAEGRAQLLREIAEDDGPESILEKLLAANIAALERTL-NLLDEEALERAVEL 126 (281)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhhccchhhcccCCCCCHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 58899999999999998887 55555543 122256777888888887775 67899999999887
Q ss_pred cCC-CC--CccCCCCCC
Q 009148 68 RNV-EP--VYGFASGGP 81 (542)
Q Consensus 68 ~nv-EP--LyGy~s~~p 81 (542)
+.- +- +||..++.+
T Consensus 127 L~~A~rI~~~G~g~S~~ 143 (281)
T COG1737 127 LAKARRIYFFGLGSSGL 143 (281)
T ss_pred HHcCCeEEEEEechhHH
Confidence 443 22 566655543
No 196
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=21.90 E-value=2.1e+02 Score=24.52 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCccCHHHHHHHHHhcCCCC-Ccc
Q 009148 10 EVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAI-KCMRHSRRTTLTTDDVDEALKLRNVEP-VYG 75 (542)
Q Consensus 10 k~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~-kfmrhskR~~Lt~~DI~~AL~~~nvEP-LyG 75 (542)
+.+|..+|+ ++.-...+..+--+.+.+-+.+.. ++..+.+ +.=|.+.+-.||+..|++| +|.
T Consensus 17 ~~Lar~Lgl---s~~~I~~i~~~~p~~l~eQv~~mL~~W~~r~G-~~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 17 EQVLLDLGL---SQTDIYRCKENHPHNVQSQIVEALVKWRQRFG-KKATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HHHHHHcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHcCCCHHHHH
Confidence 345666665 455556666654444544444444 4444443 6888999999999999976 444
No 197
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.67 E-value=1.3e+02 Score=35.63 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.++.+++.-|+ .++++++..|++...-.+|.++...-+.+-.+ ++.+|.+||...+-..+-
T Consensus 185 ~L~~Il~kEgI-~id~eAL~~IA~~S~GdLRdALnLLDQaIayg-~g~IT~edV~~lLG~~d~ 245 (702)
T PRK14960 185 HLGAILEKEQI-AADQDAIWQIAESAQGSLRDALSLTDQAIAYG-QGAVHHQDVKEMLGLIDR 245 (702)
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCcCHHHHHHHhccCCH
Confidence 45677788898 59999999999999988888888876666554 678999999886654443
No 198
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.31 E-value=1.1e+02 Score=27.94 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHHH
Q 009148 289 VAAICKRYGHVYNTLQTRLTKTLLNA 314 (542)
Q Consensus 289 L~~I~~k~~~~y~~L~~RI~~tL~k~ 314 (542)
|..+-+.+|-+||++|.|+-+.+.+.
T Consensus 52 lKe~e~~lgiSYPTvR~rLd~ii~~l 77 (113)
T PF09862_consen 52 LKEMEKELGISYPTVRNRLDKIIEKL 77 (113)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHh
Confidence 56678899999999999998866554
No 199
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=21.16 E-value=2.2e+02 Score=31.55 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSR----RTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk----R~~Lt~~DI~~AL~~ 67 (542)
+-++..++..|+. .+++|++..||+...--+|++..-..++...+. .+.+|.+.+..+|+.
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhh
Confidence 3456667777863 699999999999999877777766666644432 257999999999964
No 200
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=21.12 E-value=92 Score=34.84 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=54.2
Q ss_pred cccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCC
Q 009148 167 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 246 (542)
Q Consensus 167 kh~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np 246 (542)
+..|++++|.+|++++..|-+..+. - =|..+|-|||..|.+.-.....|+.-+..++.++-+++...
T Consensus 51 R~~l~~~qq~~Fe~~~~~~d~~~~~------------i-PLtFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~ 117 (450)
T KOG3547|consen 51 RFALTESQQETFEKFVMYCDSRLDF------------I-PLTFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGT 117 (450)
T ss_pred HHhcCHHHHHHHHHHHHHHhccccc------------c-cchHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCC
Confidence 4579999999999999998544221 1 36788999999999887777788888888888888888884
Q ss_pred C
Q 009148 247 H 247 (542)
Q Consensus 247 ~ 247 (542)
.
T Consensus 118 d 118 (450)
T KOG3547|consen 118 D 118 (450)
T ss_pred c
Confidence 4
No 201
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.10 E-value=5.8e+02 Score=22.51 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=38.7
Q ss_pred ccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Q 009148 251 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLD 317 (542)
Q Consensus 251 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llD 317 (542)
|-++..++|.++.++-.+... ++|--|=.+++.++.+.. |.+.+++.+.+.+..
T Consensus 1 E~~l~~lLP~l~~~L~~s~~~--------d~~~a~ymIl~~La~k~~-----L~~~~l~~l~~~i~~ 54 (121)
T PF12397_consen 1 EDILPRLLPFLLKGLKSSSSP--------DLQAAAYMILSVLASKVP-----LSDEVLNALMESILK 54 (121)
T ss_pred CcHHHHHHHHHHHHHccCCcH--------HHHHHHHHHHHHHHhhcC-----CcHHHHHHHHHHHHh
Confidence 568889999999998633221 778777788999999885 555666666666553
No 202
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.95 E-value=2e+02 Score=32.99 Aligned_cols=56 Identities=25% Similarity=0.288 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++.-|++ ++++++..|++...-.+|.++.+.-+....++ .++|.+||...+
T Consensus 186 ~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~Ldqliay~g-~~It~edV~~ll 241 (576)
T PRK14965 186 RLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTLDQVLAFCG-DAVGDDDVAELL 241 (576)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCCCHHHHHHHh
Confidence 456677788985 99999999999999888888888777776666 469999988654
No 203
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=20.58 E-value=2.6e+02 Score=23.86 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=29.2
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIR 38 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlr 38 (542)
|. +.++.|+.+|+.+-+ +++++-+..+..+++..+.
T Consensus 1 M~-i~~e~i~~la~La~l-~l~~ee~~~~~~~l~~il~ 36 (95)
T PRK00034 1 MA-ITREEVKHLAKLARL-ELSEEELEKFAGQLNKILD 36 (95)
T ss_pred CC-CCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHH
Confidence 53 889999999999999 5999988888777665443
No 204
>smart00323 RasGAP GTPase-activator protein for Ras-like GTPases. All alpha-helical domain that accelerates the GTPase activity of Ras, thereby "switching" it into an "off" position. Improved domain limits from structure.
Probab=20.42 E-value=4.5e+02 Score=27.81 Aligned_cols=102 Identities=22% Similarity=0.215 Sum_probs=62.9
Q ss_pred cccchhHHHHHHHHhhccC------CCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccC--CCC-----
Q 009148 208 HPLVPYFTYFVADEVSRGL------NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRL----- 274 (542)
Q Consensus 208 ~qLLPYfv~FI~e~V~~nl------~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~--~~~----- 274 (542)
..+.+++-..+..+|...- +.......+|.....++. ..||+..+.+++.=++...-+ ..|
T Consensus 69 ~~~~~~L~~li~~Ei~~~~~~~~lfR~Nsl~tk~l~~y~k~~g------~~yL~~~l~~~i~~i~~~~~~~e~dp~k~~~ 142 (344)
T smart00323 69 GRGHPFLRALIDPEVERTDDPNTIFRGNSLATKSMEVYMKLVG------NQYLHTTLKPVLKKIVESKKSCEVDPAKLEG 142 (344)
T ss_pred CcHHHHHHHHHHHHHHcCCcHhhHhhhccHhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHcCCCCCCcChhhcCh
Confidence 4567777777888887621 233445555555555543 388888888888777665322 111
Q ss_pred ---CCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009148 275 ---ADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL 316 (542)
Q Consensus 275 ---~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 316 (542)
..+...||+++..++..|++.... .|.--..|.+.+.+.+.
T Consensus 143 ~~~~~n~~~L~~~~~~~~~~I~~s~~~-~P~~lr~i~~~l~~~~~ 186 (344)
T smart00323 143 EDLETNLENLLQYVERLFDAIINSSDR-LPYGLRDICKQLRQAAE 186 (344)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHh-CcHHHHHHHHHHHHHHH
Confidence 124578899999999999876543 33333356665555543
No 205
>cd05136 RasGAP_DAB2IP The DAB2IP family of Ras GTPase-activating proteins includes DAB2IP, nGAP, and Syn GAP. Disabled 2 interactive protein, (DAB2IP; also known as ASK-interacting protein 1 (AIP1)), is a member of the GTPase-activating proteins, down-regulates Ras-mediated signal pathways, and mediates TNF-induced activation of ASK1-JNK signaling pathways. The mechanism by which TNF signaling is coupled to DAB2IP is not known.
Probab=20.27 E-value=1e+03 Score=25.16 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=67.6
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHH----HHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccC--CCCC-------
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFA----LMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLG--NRLA------- 275 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~----lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~--~~~~------- 275 (542)
...|++..-|..+|....++-..+.+ .-||+.+-... .=..||++.+-+++.-++....+ .+|.
T Consensus 46 ~~~~~l~~Li~~EI~~~~~~~~~lfRgNsl~tK~~~~y~k~---~G~~YL~~~L~p~I~~ii~~~~~~EiDP~k~~~~~l 122 (309)
T cd05136 46 KAKDFLTDLVMAEVDRCGENERLIFRENTLATKAIEEYLKL---VGQDYLQDTLGEFIRALYESEENCEVDPSKCSASEL 122 (309)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHhcCcHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHcCCCCcccCccccCchhH
Confidence 44566666667777765433333332 34555555543 23899999999999988876432 1221
Q ss_pred -CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC
Q 009148 276 -DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLD 317 (542)
Q Consensus 276 -~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llD 317 (542)
.+.-.||.++..++..|++....-=.+++ .|.+.+.+.+.+
T Consensus 123 ~~n~~~L~~~~~~~~~~I~~S~~~~P~~lR-~i~~~lr~~~~~ 164 (309)
T cd05136 123 PDHQANLRMCCELAWCKIINSHCVFPAELR-EVFASWRERCED 164 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhCCHHHH-HHHHHHHHHHhh
Confidence 23458999999999999987654334555 777777777654
No 206
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=20.16 E-value=3.1e+02 Score=24.26 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHHcCC--CCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 10 EVIAQSIGI--SNFSTDAALALAPDVEYR-IREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 10 k~iAes~Gi--~~Lsdeaa~~La~dVEyr-lreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
|.+|.++|- .-++|.....|+.+-+-- +.|-+.+..+--+.+....-|.+.+-.||+...+.
T Consensus 17 K~laR~Lg~~cral~d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~ 81 (90)
T cd08780 17 KPVGRSLQKNCRALRDPAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLT 81 (90)
T ss_pred HHHHHHHcccccccchhHHHHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccch
Confidence 566777772 237898889998777655 77777777766666666679999999999987653
Done!