Query 009148
Match_columns 542
No_of_seqs 178 out of 329
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 19:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4atg_A TAF6; transcription, TF 100.0 1.8E-58 6E-63 445.6 20.3 182 167-358 2-183 (196)
2 1taf_B TFIID TBP associated fa 99.9 2.8E-24 9.5E-29 175.5 9.6 67 1-67 4-70 (70)
3 2hue_C Histone H4; mini beta s 99.7 2.1E-18 7.2E-23 145.5 6.5 75 3-78 10-84 (84)
4 1id3_B Histone H4; nucleosome 99.7 1.1E-17 3.7E-22 146.1 8.3 75 3-78 28-102 (102)
5 2yfw_B Histone H4, H4; cell cy 99.7 8.9E-17 3.1E-21 140.4 7.7 75 3-78 29-103 (103)
6 1tzy_D Histone H4-VI; histone- 99.7 1.1E-16 3.9E-21 139.7 7.9 75 3-78 29-103 (103)
7 1ku5_A HPHA, archaeal histon; 99.2 1.6E-11 5.3E-16 99.9 8.2 66 1-66 4-69 (70)
8 2ly8_A Budding yeast chaperone 99.1 1.2E-10 3.9E-15 104.3 7.1 62 15-77 59-120 (121)
9 1f1e_A Histone fold protein; a 99.0 9.7E-10 3.3E-14 102.3 9.6 72 1-72 2-74 (154)
10 2l5a_A Histone H3-like centrom 99.0 7.8E-11 2.7E-15 115.6 1.9 68 9-77 167-234 (235)
11 1b67_A Protein (histone HMFA); 98.9 5.9E-09 2E-13 83.9 8.7 67 2-68 1-67 (68)
12 3b0c_T CENP-T, centromere prot 98.8 6.2E-09 2.1E-13 92.0 8.1 67 3-69 7-73 (111)
13 1taf_A TFIID TBP associated fa 98.8 1.2E-08 4.2E-13 82.7 8.9 62 7-68 5-66 (68)
14 1f1e_A Histone fold protein; a 98.7 2.7E-08 9.1E-13 92.6 8.8 65 3-67 82-146 (154)
15 1n1j_A NF-YB; histone-like PAI 98.5 5.7E-07 2E-11 76.7 9.4 68 3-70 8-77 (93)
16 3b0c_W CENP-W, centromere prot 98.4 4.8E-07 1.6E-11 74.6 8.0 65 3-67 4-69 (76)
17 4dra_A Centromere protein S; D 98.4 2.4E-07 8.2E-12 81.9 5.0 60 8-67 32-94 (113)
18 2hue_B Histone H3; mini beta s 98.4 1.3E-06 4.4E-11 72.5 8.9 70 1-70 1-75 (77)
19 3b0b_B CENP-S, centromere prot 98.4 3.7E-07 1.3E-11 80.2 5.7 60 8-67 24-86 (107)
20 3nqj_A Histone H3-like centrom 98.3 2E-06 7E-11 72.1 8.5 71 1-71 1-78 (82)
21 3v9r_A MHF1, uncharacterized p 98.2 3E-06 1E-10 72.2 7.8 58 9-67 18-79 (90)
22 3vh5_A CENP-S; histone fold, c 98.1 2.9E-06 9.8E-11 77.5 5.2 56 11-67 31-86 (140)
23 1jfi_B DR1 protein, transcript 98.1 1.4E-05 4.7E-10 76.0 9.6 69 3-71 15-84 (179)
24 2byk_B Chrac-14; nucleosome sl 98.0 1.2E-05 4.2E-10 72.6 8.4 68 3-70 9-78 (128)
25 1n1j_B NF-YC; histone-like PAI 97.9 2.5E-05 8.5E-10 67.2 7.6 67 2-68 18-85 (97)
26 2yfv_A Histone H3-like centrom 97.8 4.2E-05 1.4E-09 66.4 7.6 65 3-67 27-99 (100)
27 3nqu_A Histone H3-like centrom 97.8 3.5E-05 1.2E-09 70.5 7.4 70 3-72 61-137 (140)
28 2nqb_C Histone H2A; nucleosome 97.8 6E-05 2.1E-09 67.7 8.1 65 3-67 23-88 (123)
29 2f8n_G Core histone macro-H2A. 97.8 5.9E-05 2E-09 67.5 7.9 65 3-67 22-87 (120)
30 1tzy_C Histone H3; histone-fol 97.8 7.6E-05 2.6E-09 68.0 8.7 68 3-70 62-134 (136)
31 3r45_A Histone H3-like centrom 97.7 5.3E-05 1.8E-09 70.3 6.8 68 3-70 77-151 (156)
32 1tzy_A Histone H2A-IV; histone 97.7 8.8E-05 3E-09 67.1 8.1 65 3-67 25-90 (129)
33 2f8n_K Histone H2A type 1; nuc 97.7 8.3E-05 2.8E-09 68.8 7.6 65 3-67 44-109 (149)
34 1id3_C Histone H2A.1; nucleoso 97.6 9.2E-05 3.1E-09 67.2 6.9 65 3-67 25-90 (131)
35 1jfi_A Transcription regulator 97.5 8.4E-05 2.9E-09 64.1 5.0 65 3-67 11-76 (98)
36 1f66_C Histone H2A.Z; nucleoso 97.5 0.00021 7.2E-09 64.5 7.3 65 3-67 27-93 (128)
37 1ibr_B P95, importin beta-1 su 97.5 0.0038 1.3E-07 63.4 17.5 126 249-384 314-439 (462)
38 4g92_C HAPE; transcription fac 97.4 0.00034 1.2E-08 62.3 7.5 65 3-67 41-106 (119)
39 2jss_A Chimera of histone H2B. 97.3 0.00058 2E-08 65.5 8.3 65 3-67 105-171 (192)
40 4fdd_A Transportin-1; heat rep 97.3 0.0034 1.2E-07 70.6 15.6 195 177-383 216-430 (852)
41 2bpt_A Importin beta-1 subunit 97.0 0.017 5.6E-07 63.8 17.3 124 250-383 318-441 (861)
42 1qgr_A Protein (importin beta 96.9 0.0053 1.8E-07 67.9 13.1 172 197-383 351-538 (876)
43 2nqb_D Histone H2B; nucleosome 96.9 0.002 6.9E-08 57.6 7.6 61 8-68 38-99 (123)
44 2bpt_A Importin beta-1 subunit 96.8 0.0088 3E-07 66.0 13.7 174 196-385 353-532 (861)
45 1tzy_B Histone H2B; histone-fo 96.8 0.0026 9E-08 57.1 7.6 61 8-68 41-102 (126)
46 4fdd_A Transportin-1; heat rep 96.7 0.023 7.9E-07 63.8 15.7 150 196-360 343-493 (852)
47 2qk2_A LP04448P; mini spindles 96.7 0.023 7.8E-07 54.1 13.5 129 232-387 78-210 (242)
48 1qgr_A Protein (importin beta 96.6 0.036 1.2E-06 61.2 16.6 120 232-360 625-744 (876)
49 2qk1_A Protein STU2; STU2P, XM 96.4 0.045 1.6E-06 53.4 13.7 190 176-386 20-224 (249)
50 2qk2_A LP04448P; mini spindles 96.2 0.049 1.7E-06 51.7 12.6 107 176-298 98-209 (242)
51 2byk_A Chrac-16; nucleosome sl 96.2 0.0046 1.6E-07 56.6 5.0 66 3-68 19-86 (140)
52 2jss_A Chimera of histone H2B. 96.0 0.018 6.2E-07 55.1 8.7 60 8-67 8-68 (192)
53 1h3o_B Transcription initiatio 95.6 0.066 2.3E-06 44.1 9.2 65 3-67 5-70 (76)
54 1u6g_C TIP120 protein, CAND1; 95.1 0.58 2E-05 54.7 18.3 118 230-357 492-617 (1230)
55 1bh9_B TAFII28; histone fold, 94.7 0.16 5.5E-06 43.0 8.9 68 2-69 15-83 (89)
56 1ibr_B P95, importin beta-1 su 94.2 0.18 6.2E-06 50.9 9.9 91 196-298 350-441 (462)
57 2l5a_A Histone H3-like centrom 94.1 0.086 3E-06 51.9 6.9 63 8-70 20-86 (235)
58 1b3u_A Protein (protein phosph 94.0 0.96 3.3E-05 47.1 15.3 134 186-337 96-232 (588)
59 1u6g_C TIP120 protein, CAND1; 93.6 1.1 3.7E-05 52.4 16.2 186 179-384 9-206 (1230)
60 1b3u_A Protein (protein phosph 93.4 0.97 3.3E-05 47.1 14.1 114 253-385 438-551 (588)
61 2qk1_A Protein STU2; STU2P, XM 91.9 2.6 8.9E-05 40.8 13.9 145 176-335 60-218 (249)
62 4dra_E Centromere protein X; D 91.3 1 3.5E-05 37.7 8.7 63 3-66 12-78 (84)
63 2x1g_F Cadmus; transport prote 90.5 3.5 0.00012 46.9 15.2 147 197-360 444-594 (971)
64 1h3o_A Transcription initiatio 90.0 0.2 7E-06 41.1 3.3 45 8-52 11-55 (75)
65 2x19_B Importin-13; nuclear tr 89.8 2.9 9.9E-05 47.2 13.7 137 208-360 440-578 (963)
66 1wa5_C Importin alpha RE-expor 89.1 4.2 0.00014 46.4 14.5 149 197-361 384-559 (960)
67 3b0b_C CENP-X, centromere prot 89.1 1.4 4.9E-05 36.5 7.8 64 3-66 8-74 (81)
68 4db6_A Armadillo repeat protei 84.4 1.9 6.5E-05 38.9 6.8 141 177-335 13-165 (210)
69 4db8_A Armadillo-repeat protei 83.9 2.8 9.7E-05 38.8 7.9 111 210-337 55-167 (252)
70 4hat_C Exportin-1; heat repeat 83.7 5.2 0.00018 46.8 11.6 157 195-359 434-598 (1023)
71 2of3_A ZYG-9; multifunctional 83.7 29 0.00099 34.5 15.5 138 227-393 99-247 (266)
72 4hxt_A De novo protein OR329; 83.3 3.8 0.00013 37.5 8.4 110 210-336 45-156 (252)
73 1wa5_B Importin alpha subunit; 82.1 19 0.00064 37.7 14.2 111 208-335 172-284 (530)
74 2vgl_B AP-2 complex subunit be 82.0 4.7 0.00016 43.5 9.8 159 191-389 332-493 (591)
75 2vgl_B AP-2 complex subunit be 81.4 15 0.0005 39.6 13.4 76 250-338 115-190 (591)
76 4ffb_C Protein STU2; tubulin f 81.3 9.4 0.00032 36.8 10.8 128 178-316 104-242 (278)
77 1wa5_B Importin alpha subunit; 81.1 7.4 0.00025 40.8 10.7 111 209-336 215-327 (530)
78 1wa5_C Importin alpha RE-expor 80.8 3.6 0.00012 47.0 8.7 103 230-335 307-432 (960)
79 3ltj_A Alpharep-4; protein eng 78.8 21 0.00073 31.8 11.7 30 188-218 25-54 (201)
80 2x19_B Importin-13; nuclear tr 78.8 10 0.00034 42.8 11.4 87 234-336 512-602 (963)
81 2jdq_A Importin alpha-1 subuni 78.5 28 0.00094 34.8 13.5 111 209-336 149-262 (450)
82 2jdq_A Importin alpha-1 subuni 78.2 17 0.00059 36.3 11.9 140 180-336 153-304 (450)
83 1w63_A Adapter-related protein 77.7 27 0.00091 38.0 14.1 139 177-339 351-492 (618)
84 3m1i_C Exportin-1; heat repeat 77.6 26 0.00089 40.4 14.6 125 207-336 338-481 (1049)
85 3uk6_A RUVB-like 2; hexameric 77.6 8.7 0.0003 38.2 9.4 58 9-67 268-329 (368)
86 4ffb_C Protein STU2; tubulin f 77.5 28 0.00095 33.4 12.8 153 227-395 67-225 (278)
87 4hxt_A De novo protein OR329; 77.3 7.9 0.00027 35.3 8.4 110 210-336 87-198 (252)
88 1oyz_A Hypothetical protein YI 75.6 47 0.0016 31.2 13.7 15 279-293 105-119 (280)
89 1oyz_A Hypothetical protein YI 74.9 23 0.0008 33.4 11.3 122 178-338 130-251 (280)
90 3ltm_A Alpha-REP4; protein eng 74.2 49 0.0017 29.6 13.8 50 276-337 123-172 (211)
91 2x1g_F Cadmus; transport prote 73.9 10 0.00035 43.0 9.8 85 232-333 527-614 (971)
92 2vgl_A Adaptor protein complex 73.6 38 0.0013 37.0 14.0 78 251-339 141-218 (621)
93 4db8_A Armadillo-repeat protei 73.2 5 0.00017 37.1 5.9 109 210-335 97-207 (252)
94 1jr3_D DNA polymerase III, del 73.1 3.1 0.00011 41.5 4.7 60 7-67 149-208 (343)
95 1xqr_A HSPBP1 protein; armadil 72.4 79 0.0027 31.3 15.6 157 209-388 124-286 (296)
96 3ltm_A Alpha-REP4; protein eng 72.2 52 0.0018 29.5 12.5 121 179-338 22-142 (211)
97 2chg_A Replication factor C sm 71.7 7.9 0.00027 34.4 6.7 55 9-66 170-224 (226)
98 1vsy_5 Proteasome activator BL 71.7 3.3 0.00011 48.5 5.2 98 227-335 814-922 (997)
99 3bos_A Putative DNA replicatio 71.3 5.9 0.0002 36.2 5.9 57 8-66 182-241 (242)
100 3ltj_A Alpharep-4; protein eng 70.7 57 0.0019 28.9 13.2 123 178-339 47-169 (201)
101 3m1i_C Exportin-1; heat repeat 70.3 33 0.0011 39.5 13.1 155 196-360 435-599 (1049)
102 2iw3_A Elongation factor 3A; a 70.0 73 0.0025 37.3 15.8 174 196-385 36-223 (986)
103 4b8j_A Importin subunit alpha- 69.8 33 0.0011 35.6 11.9 112 208-335 243-356 (528)
104 3ksy_A SOS-1, SON of sevenless 67.8 12 0.00042 43.8 8.9 65 3-67 104-168 (1049)
105 3kw6_A 26S protease regulatory 67.1 5.9 0.0002 31.3 4.3 42 26-67 27-72 (78)
106 4b8j_A Importin subunit alpha- 66.2 24 0.00082 36.6 10.0 99 227-336 215-314 (528)
107 1in4_A RUVB, holliday junction 65.7 15 0.0005 36.7 7.9 63 8-71 188-253 (334)
108 2dzn_B 26S protease regulatory 62.7 7.9 0.00027 31.1 4.3 34 35-68 35-68 (82)
109 3u0r_A Apoptosis inhibitor 5; 61.7 1.8E+02 0.0063 31.5 16.3 171 161-343 161-364 (507)
110 1njg_A DNA polymerase III subu 58.8 14 0.00048 33.1 5.7 56 9-66 194-249 (250)
111 4db6_A Armadillo repeat protei 57.1 21 0.00072 31.9 6.6 111 209-336 96-208 (210)
112 3vlf_B 26S protease regulatory 56.0 14 0.00046 30.2 4.6 44 26-69 25-72 (88)
113 4hat_C Exportin-1; heat repeat 55.8 61 0.0021 37.9 11.7 89 235-337 524-622 (1023)
114 2krk_A 26S protease regulatory 55.2 12 0.00042 30.5 4.3 33 35-67 48-80 (86)
115 3ibv_A Exportin-T; karyopherin 54.2 1.2E+02 0.004 35.2 13.7 96 209-316 486-588 (980)
116 3aji_B S6C, proteasome (prosom 52.5 9.6 0.00033 30.4 3.1 34 35-68 38-71 (83)
117 2v1u_A Cell division control p 50.0 50 0.0017 32.3 8.5 64 5-68 202-276 (387)
118 2c9o_A RUVB-like 1; hexameric 49.7 46 0.0016 34.7 8.7 58 9-67 375-436 (456)
119 2vgl_A Adaptor protein complex 47.6 1.7E+02 0.0058 31.8 13.1 178 175-388 367-549 (621)
120 1w63_A Adapter-related protein 47.0 1.2E+02 0.004 32.9 11.6 71 253-338 139-209 (618)
121 2z6h_A Catenin beta-1, beta-ca 46.6 97 0.0033 33.3 10.9 116 189-318 26-152 (644)
122 3k1j_A LON protease, ATP-depen 44.2 51 0.0017 35.8 8.2 50 18-67 312-374 (604)
123 1sxj_D Activator 1 41 kDa subu 42.4 17 0.00057 35.6 3.7 57 9-66 201-261 (353)
124 1g8p_A Magnesium-chelatase 38 41.9 89 0.0031 30.3 8.9 50 17-67 265-321 (350)
125 2z6g_A B-catenin; FULL-length, 41.7 78 0.0027 35.4 9.4 117 188-318 161-288 (780)
126 2qby_A CDC6 homolog 1, cell di 41.6 1.2E+02 0.0041 29.4 9.8 50 19-68 217-272 (386)
127 2z6g_A B-catenin; FULL-length, 41.6 29 0.00099 38.9 5.9 98 228-336 373-471 (780)
128 3h4m_A Proteasome-activating n 41.3 23 0.00078 33.8 4.4 42 26-67 212-257 (285)
129 1jdh_A Beta-catenin; beta-cate 40.9 1.3E+02 0.0044 30.6 10.3 96 209-318 59-155 (529)
130 2qz4_A Paraplegin; AAA+, SPG7, 40.5 15 0.00051 34.3 2.9 59 8-67 185-248 (262)
131 3gs3_A Symplekin, LD45768P; he 37.9 3E+02 0.01 26.9 14.2 133 230-382 31-173 (257)
132 1te4_A Conserved protein MTH18 37.6 21 0.00073 30.1 3.1 51 276-338 53-103 (131)
133 3v9r_B MHF2, uncharacterized p 35.0 56 0.0019 27.5 5.1 61 4-65 2-73 (88)
134 1jr3_A DNA polymerase III subu 34.6 45 0.0015 32.7 5.4 57 8-66 186-242 (373)
135 2qby_B CDC6 homolog 3, cell di 34.4 87 0.003 30.7 7.5 63 4-68 197-270 (384)
136 3ibv_A Exportin-T; karyopherin 33.0 1.8E+02 0.0063 33.6 10.9 144 209-360 432-588 (980)
137 2r44_A Uncharacterized protein 32.8 1.5E+02 0.0053 28.7 9.0 48 20-67 226-296 (331)
138 4b4t_I 26S protease regulatory 31.7 50 0.0017 35.2 5.4 42 26-67 377-422 (437)
139 3ip4_C Aspartyl/glutamyl-tRNA( 31.3 86 0.0029 26.4 5.8 38 1-39 1-38 (100)
140 2ly8_A Budding yeast chaperone 31.2 75 0.0026 28.1 5.6 47 8-54 10-60 (121)
141 1sxj_B Activator 1 37 kDa subu 30.6 96 0.0033 29.5 6.9 56 8-66 174-229 (323)
142 1fnn_A CDC6P, cell division co 30.1 1.3E+02 0.0043 29.5 7.9 49 20-68 214-274 (389)
143 2db0_A 253AA long hypothetical 30.0 3.9E+02 0.013 25.9 10.7 103 280-396 122-227 (253)
144 2chq_A Replication factor C sm 29.2 55 0.0019 31.1 4.9 55 8-65 169-223 (319)
145 3a6p_A Exportin-5; exportin-5, 28.5 6.7E+02 0.023 29.5 14.9 136 232-383 510-655 (1204)
146 3pfi_A Holliday junction ATP-d 28.1 1.1E+02 0.0038 29.7 7.0 62 8-70 192-256 (338)
147 3oc3_A Helicase MOT1, MOT1; re 27.8 95 0.0033 34.9 6.8 137 262-415 223-365 (800)
148 1lv7_A FTSH; alpha/beta domain 27.6 66 0.0022 30.1 5.0 43 26-68 206-252 (257)
149 3tjz_B Coatomer subunit gamma; 27.0 86 0.003 32.2 6.1 144 171-337 133-279 (355)
150 3kfu_G Glutamyl-tRNA(Gln) amid 26.0 1.2E+02 0.0042 25.0 5.8 37 1-39 4-40 (92)
151 3a6p_A Exportin-5; exportin-5, 24.9 8.9E+02 0.031 28.4 18.5 89 203-297 345-455 (1204)
152 3d8b_A Fidgetin-like protein 1 24.8 1.2E+02 0.004 30.4 6.5 60 8-68 259-334 (357)
153 4b4t_J 26S protease regulatory 24.4 65 0.0022 33.9 4.6 42 26-67 343-388 (405)
154 1hqc_A RUVB; extended AAA-ATPa 24.1 95 0.0033 29.8 5.6 60 9-69 177-239 (324)
155 3ul1_B Importin subunit alpha- 24.0 6.1E+02 0.021 26.2 14.9 102 178-294 59-172 (510)
156 3opb_A SWI5-dependent HO expre 23.7 5.6E+02 0.019 29.2 12.4 141 229-382 471-635 (778)
157 3mn2_A Probable ARAC family tr 23.1 1.9E+02 0.0065 23.4 6.5 55 8-65 20-79 (108)
158 1ixz_A ATP-dependent metallopr 22.9 57 0.0019 30.5 3.6 45 21-65 204-253 (254)
159 1l8q_A Chromosomal replication 22.6 56 0.0019 31.9 3.6 58 8-67 174-239 (324)
160 2z6h_A Catenin beta-1, beta-ca 22.3 5.9E+02 0.02 27.1 11.9 97 228-335 237-334 (644)
161 1jdh_A Beta-catenin; beta-cate 21.6 3.8E+02 0.013 27.0 9.9 98 228-336 240-338 (529)
162 4b4t_L 26S protease subunit RP 21.4 79 0.0027 33.4 4.6 41 27-67 377-421 (437)
163 4b4t_H 26S protease regulatory 21.3 80 0.0027 33.9 4.6 41 27-67 405-449 (467)
164 1iy2_A ATP-dependent metallopr 20.9 65 0.0022 30.8 3.6 46 21-66 228-278 (278)
165 2z4s_A Chromosomal replication 20.2 74 0.0025 33.1 4.1 58 9-68 272-332 (440)
No 1
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=100.00 E-value=1.8e-58 Score=445.63 Aligned_cols=182 Identities=34% Similarity=0.619 Sum_probs=177.2
Q ss_pred cccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCC
Q 009148 167 KHILSRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 246 (542)
Q Consensus 167 kh~LSkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np 246 (542)
||+||+|||+||++||++|++ ..|++||++|++|||||||+|||++||+++|++|++|+..|.++|||++||++||
T Consensus 2 kh~LS~Elq~yf~~It~a~~~----~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~ 77 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKS----DMKDIAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNK 77 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTS----TTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999998 3589999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhh
Q 009148 247 HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHY 326 (542)
Q Consensus 247 ~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~Y 326 (542)
+++||||+|||+|++|||+|++++|.+ +|||+||++|+.||++||++|++|++||+++|+++|+||++|+++||
T Consensus 78 ~l~lepYlH~LipsvLtCll~k~l~~~------~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~Y 151 (196)
T 4atg_A 78 HVFIDPYLHQILPSLLTCVIGKSIVDD------DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQY 151 (196)
T ss_dssp TCCCGGGHHHHHHHHHHHHHCTTCCCH------HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhcccCHH------HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999999999999875 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhCHHHHHHhhccChHHHHHhhhHh
Q 009148 327 GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPE 358 (542)
Q Consensus 327 GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~ 358 (542)
|||+||++||++|||.+|+|+++.|++.++..
T Consensus 152 GAi~GL~~lG~~~vr~~llP~l~~~~~~~~~~ 183 (196)
T 4atg_A 152 GALYCLSILSKNVVNTVIREHAEEYKRTIGKK 183 (196)
T ss_dssp HHHHHHHHHCHHHHHTHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHhHHHHHHHhhhcCHHHHHHHHHHH
Confidence 99999999999999999999999999988753
No 2
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.90 E-value=2.8e-24 Score=175.45 Aligned_cols=67 Identities=42% Similarity=0.649 Sum_probs=65.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
|++||.++|++|||++|+++||||++..||+|||||++||+|+|+|||+|+||++||++||+.||+.
T Consensus 4 ~s~lp~~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 4 GSSISAESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp SCCCCHHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cccCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999974
No 3
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.73 E-value=2.1e-18 Score=145.52 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=72.1
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 78 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (542)
.+|+++|+++|++.|+.++|+++...|++++++++++|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 10 ~ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g-~~lYgf~~ 84 (84)
T 2hue_C 10 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 84 (84)
T ss_dssp SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTC-EEEESCC-
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999886 89999963
No 4
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.71 E-value=1.1e-17 Score=146.10 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 78 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (542)
.||+++|+++|++.|+.++|+++..+|++++|+++.+|++||++||+|++|+|||++||..||+.++ +|+|||.+
T Consensus 28 ~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g-~~lYGf~~ 102 (102)
T 1id3_B 28 GITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 102 (102)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CCEESSCC
T ss_pred CCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCCCCCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999986 89999964
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.66 E-value=8.9e-17 Score=140.44 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 78 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (542)
.||.++|+++|++.|+.++|+++...|++.+||++.+|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 2yfw_B 29 GITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp -CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---------
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 89999963
No 6
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.66 E-value=1.1e-16 Score=139.73 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCCC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFAS 78 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~s 78 (542)
.||.++|+++|++.|+.++|+++...|++.+||++.+|+++|.+||+|+||+|+|++||..||+.++ +|+|||.+
T Consensus 29 gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g-~~lYGf~~ 103 (103)
T 1tzy_D 29 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG-RTLYGFGG 103 (103)
T ss_dssp GSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT-CEEESCCC
T ss_pred cCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC-CCCcCCCC
Confidence 3899999999999999999999999999999999999999999999999999999999999999997 89999963
No 7
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.25 E-value=1.6e-11 Score=99.85 Aligned_cols=66 Identities=30% Similarity=0.409 Sum_probs=63.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
|+.||..+|++++++.|..++|+++...|++.+++.+.+|+++|..|++|+||+|++++||..|++
T Consensus 4 ~~~lp~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 4 MGELPIAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp -CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cccCChHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999999999986
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.09 E-value=1.2e-10 Score=104.33 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=60.2
Q ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCC
Q 009148 15 SIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFA 77 (542)
Q Consensus 15 s~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (542)
-.|+.++|+++.+.+.+.++.++.+|+++|+++++|+||||+|++||..|||..|. |+|||.
T Consensus 59 ~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~-~lygf~ 120 (121)
T 2ly8_A 59 PRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR-TLYGFG 120 (121)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC-GGGGCC
T ss_pred ccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC-cCCCCC
Confidence 46999999999999999999999999999999999999999999999999999998 999996
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.00 E-value=9.7e-10 Score=102.28 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=68.2
Q ss_pred CCCCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCC
Q 009148 1 MSIVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEP 72 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEP 72 (542)
|.+||..+|.+|++.. |..++|+||...|++-++..+..|..+|..+++|+||+|++.+||..|+..+|+|.
T Consensus 2 ~~~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~ 74 (154)
T 1f1e_A 2 AVELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG 74 (154)
T ss_dssp --CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT
T ss_pred cccCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc
Confidence 6789999999999999 99999999999999999999999999999999999999999999999999998873
No 10
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=7.8e-11 Score=115.58 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=65.7
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCCCccCC
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEPVYGFA 77 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEPLyGy~ 77 (542)
++++|+..|+.++|+++.+.+.+.++.++.+|+++|++|++|++|+|+|++||..||+..+ .|+|||.
T Consensus 167 ~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g-r~lYGf~ 234 (235)
T 2l5a_A 167 DEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG-RTLYGFG 234 (235)
T ss_dssp CCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred HHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC-CccccCC
Confidence 4578999999999999999999999999999999999999999999999999999999999 9999996
No 11
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.88 E-value=5.9e-09 Score=83.94 Aligned_cols=67 Identities=31% Similarity=0.402 Sum_probs=64.5
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
+.+|..+|++++++.|..+++.++...|++.+|+.+..+..+|..+++|+||+|++.+||..|++.+
T Consensus 1 ~~lP~a~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 1 GELPIAPIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CCSCHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCCccHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 4699999999999999999999999999999999999999999999999999999999999999865
No 12
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.84 E-value=6.2e-09 Score=92.03 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
.||...|++|++..|..++|+++..+|.+-++..+.+|+.+|..|++|+||+|++++||..|++..+
T Consensus 7 ~lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g 73 (111)
T 3b0c_T 7 EIASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQG 73 (111)
T ss_dssp ---CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999865
No 13
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.83 E-value=1.2e-08 Score=82.73 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
..|.+|.++.|++++++++...|.+.++....+|+++|..|++|++|++++.+||..|++.+
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999864
No 14
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.72 E-value=2.7e-08 Score=92.62 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=63.6
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.||..+|.++++..|..++|+++...|++-+|+.+.+|+.+|.++++|+||+|+|.+||..|++.
T Consensus 82 ~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 82 LFGRATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999986
No 15
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.47 E-value=5.7e-07 Score=76.70 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 3 IVPKETVEVIAQSIGI--SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi--~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.||..+|++|+++.|- .++|.||..+|++.+|..+..+..+|..++.|.||+||+.+||..|++.++.
T Consensus 8 ~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F 77 (93)
T 1n1j_A 8 YLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGF 77 (93)
T ss_dssp CCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTC
T ss_pred cCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 5899999999999965 6899999999999999999999999999999999999999999999996553
No 16
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.45 E-value=4.8e-07 Score=74.56 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCChHHHHHHHH-HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQ-SIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAe-s~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|.++|++|.+ ..+-.++|.||...+.+.++..+..|..||.+.++|.+|+|++.+||..|++.
T Consensus 4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999999 55877899999999999999999999999999999999999999999999985
No 17
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.38 E-value=2.4e-07 Score=81.89 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISN---FSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~---Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+|.+|+++.|.++ +|++++..|++-++..+.+|..++..|++|+||++++++||..|+|.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr 94 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 94 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence 5778888887766 99999999999999999999999999999999999999999999875
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.38 E-value=1.3e-06 Score=72.50 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=65.5
Q ss_pred CCCCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 1 MSIVPKETVEVIAQSI-----GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~-----Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
|-.+|+.++.++.+.+ |-.+.+.+|..+|.+..|..+-++.++|..++.|+||.|+++.||..|.+.++.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 75 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 75 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence 6678999999999888 888999999999999999999999999999999999999999999999999874
No 19
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.36 E-value=3.7e-07 Score=80.19 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=56.0
Q ss_pred HHHHHHHHcCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGI---SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi---~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+|.+|++..|. .++++++...|++-++..+.+|..+|..|++|+||++++++||..|+|.
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rr 86 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARR 86 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHh
Confidence 47788888887 6899999999999999999999999999999999999999999999875
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.30 E-value=2e-06 Score=72.08 Aligned_cols=71 Identities=28% Similarity=0.329 Sum_probs=64.1
Q ss_pred CCCCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 1 MSIVPKETVEVIAQSIG-------ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~G-------i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
|-.+|+.++.++.+.++ -.+.+.+|..+|.+..|..+-.+.++|..++.|+||.|+++.||..|.+.++..
T Consensus 1 ~lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 1 MLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 67789999888887777 458999999999999999999999999999999999999999999999998864
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=3e-06 Score=72.20 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=51.8
Q ss_pred HHHHHHHc----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSI----GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~----Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
|..|+++. |+ ++|++++..|++-++..+.++..++..|++|+||++++++||..|+|.
T Consensus 18 V~ki~~e~~~~~g~-~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 18 VEERLQQVLSSEDI-KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHSCSSCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 45555555 56 599999999999999999999999999999999999999999999875
No 22
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.08 E-value=2.9e-06 Score=77.46 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=50.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 11 VIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 11 ~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
..+...|+ ++|++++..|++-++..+.+|..++..|++|+||+|++++||..++|.
T Consensus 31 e~~~~~~~-~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr 86 (140)
T 3vh5_A 31 DVAEDKGV-LFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR 86 (140)
T ss_dssp HHHHHHTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred HHHHhcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 33444465 499999999999999999999999999999999999999999999975
No 23
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.05 E-value=1.4e-05 Score=76.04 Aligned_cols=69 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 3 IVPKETVEVIAQSIGI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
.||.++|.+|+++.+- .++++|+...|.+.++..|..|..+|..+++|.+|+||+.+||-.||+.++.+
T Consensus 15 ~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~ 84 (179)
T 1jfi_B 15 TIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG 84 (179)
T ss_dssp CCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred hcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence 5899999999999973 68999999999999999999999999999999999999999999999987753
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.03 E-value=1.2e-05 Score=72.60 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 3 IVPKETVEVIAQSIG--ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G--i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.||.+.|++|.+..+ ..++|.||...|++.+|..|..|..+|..+++|.+|+||+.+||..|++.++.
T Consensus 9 ~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f 78 (128)
T 2byk_B 9 NLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDF 78 (128)
T ss_dssp --CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCc
Confidence 489999999999765 77899999999999999999999999999999999999999999999999874
No 25
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.90 E-value=2.5e-05 Score=67.20 Aligned_cols=67 Identities=19% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 2 SIVPKETVEVIAQSIGI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
..+|...|++|.++-+- .++|.+|...++.-+|+.+.+++.+|...+++.||++|+.+||..|++..
T Consensus 18 ~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~ 85 (97)
T 1n1j_B 18 QELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF 85 (97)
T ss_dssp --CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred CcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence 35899999999999866 67999999999999999999999999999999999999999999998653
No 26
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.82 E-value=4.2e-05 Score=66.38 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHcC--------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIG--------ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G--------i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|+.++.++...+| .-+.+.+|..+|.+..|..+-++.++|..++.|+||.||++.||..|.+.
T Consensus 27 lIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ri 99 (100)
T 2yfv_A 27 LISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARRI 99 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHC
T ss_pred hhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHh
Confidence 478888888777776 45789999999999999999999999999999999999999999999875
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.81 E-value=3.5e-05 Score=70.45 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=59.2
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCCC
Q 009148 3 IVPKETVEVIAQSIG-------ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVEP 72 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G-------i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvEP 72 (542)
.||+.++.++...++ -.+.+.+|..+|.+..|..+-++.++|..++.|+||.||+..||..|.+.+++..
T Consensus 61 LIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~~ 137 (140)
T 3nqu_A 61 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLEE 137 (140)
T ss_dssp CSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC---
T ss_pred ccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccccc
Confidence 356666666665555 4589999999999999999999999999999999999999999999999998743
No 28
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.77 E-value=6e-05 Score=67.65 Aligned_cols=65 Identities=17% Similarity=0.225 Sum_probs=62.1
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|...|.++.+.. +..+++++|+..|+.-+||...||++.|.+.++|.+|++++++||+.|++.
T Consensus 23 ~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 23 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 58999999999996 999999999999999999999999999999999999999999999999973
No 29
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.76 E-value=5.9e-05 Score=67.45 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIG-ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G-i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|...|.++.+..+ ..+++++|+..|+.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 22 qfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 22 IFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp SSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 589999999999998 78999999999999999999999999999999999999999999999973
No 30
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.76 E-value=7.6e-05 Score=68.05 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 3 IVPKETVEVIAQSI-----GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-----Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.||+.++.++...+ |--+++.+|..+|.+..|..+-++.++|..++.|+||.||++.||..|.+.++.
T Consensus 62 LIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~ 134 (136)
T 1tzy_C 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
T ss_dssp CSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred hhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence 47888888887777 777999999999999999999999999999999999999999999999998874
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.70 E-value=5.3e-05 Score=70.25 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHcC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 3 IVPKETVEVIAQSIG-------ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G-------i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
.||+.++.++...++ -.+++.+|..+|.+..|..+-.+.++|..++.|+||.||+..||..|.+.++.
T Consensus 77 LIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~ 151 (156)
T 3r45_A 77 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 151 (156)
T ss_dssp CSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence 467777777776666 34789999999999999999999999999999999999999999999998764
No 32
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=97.70 E-value=8.8e-05 Score=67.09 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.||...|.++.+.. +..+++++|+..|+.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 25 QFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp SSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 58999999999995 999999999999999999999999999999999999999999999999973
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=97.67 E-value=8.3e-05 Score=68.77 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=62.2
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.||...|.++.+.. +..+++++|+..|+.-+||...||++.|.+.+++.+|++++++||+.|++.
T Consensus 44 qFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 44 QFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp SSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 58999999999997 999999999999999999999999999999999999999999999999974
No 34
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=97.61 E-value=9.2e-05 Score=67.16 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|...|.++.+.. +..+++++|+..|+.-+||...||++.|.+.++|.+|++++++||..|++.
T Consensus 25 qfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 25 TFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp SSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 58999999999985 899999999999999999999999999999999999999999999999973
No 35
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.52 E-value=8.4e-05 Score=64.06 Aligned_cols=65 Identities=14% Similarity=0.283 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|++|.++-+- .+++.++.-.++.-+||.+.++++.|.+++++.+|++|+.+||..|++.
T Consensus 11 ~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~ 76 (98)
T 1jfi_A 11 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL 76 (98)
T ss_dssp CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred CCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence 5899999999998765 6899999999999999999999999999999999999999999998864
No 36
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=97.48 E-value=0.00021 Score=64.55 Aligned_cols=65 Identities=17% Similarity=0.157 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHHcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGI--SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi--~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|.++.+..+. .+++.+|...|+.-+||...||++.|.+.++|.||++++++||..|++.
T Consensus 27 qfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 27 QFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp SSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 5899999999999983 4899999999999999999999999999999999999999999999974
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.46 E-value=0.0038 Score=63.41 Aligned_cols=126 Identities=13% Similarity=0.084 Sum_probs=85.5
Q ss_pred ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhH
Q 009148 249 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGA 328 (542)
Q Consensus 249 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGA 328 (542)
.+++|+..++|.++.++... .....++.|..|..|+.+|..++..++. .+-+.++..+...|.| .....+++|
T Consensus 314 ~~~~~~~~l~p~l~~~l~~~--d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~--~~~~~r~aa 386 (462)
T 1ibr_B 314 YAKGALQYLVPILTQTLTKQ--DENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKN--PDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--CSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTC--SSHHHHHHH
T ss_pred HHHHHhhhccHHHHHHHHhc--ccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 34678889999888776322 1112457899999999999999999984 5556777777777765 468889999
Q ss_pred HHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009148 329 VQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAA 384 (542)
Q Consensus 329 I~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~ 384 (542)
+.+|.+++...-...+-|+++.+...|-+.+.+ .+..+|..|-.+.|-+....
T Consensus 387 l~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 387 VMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD---PSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhc
Confidence 999999975322233456677777766666643 23345555555555544443
No 38
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.39 E-value=0.00034 Score=62.27 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=60.4
Q ss_pred CCChHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|++|.++- .+..++.+|...++.-+||.+.+++.+|...++..||++|+.+||..|++.
T Consensus 41 ~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~ 106 (119)
T 4g92_C 41 QLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK 106 (119)
T ss_dssp SSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred CCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence 58999999999963 556799999999999999999999999999999999999999999999964
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.29 E-value=0.00058 Score=65.52 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHc-CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSI-GI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~-Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|...|.++.+.. +. .+++++|+..|+.-+||...||++.|.+.++|.||++++++||+.|++.
T Consensus 105 ~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 105 QFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 58999999999997 54 5999999999999999999999999999999999999999999999973
No 40
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.26 E-value=0.0034 Score=70.57 Aligned_cols=195 Identities=13% Similarity=0.199 Sum_probs=117.0
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhhhcCCc--cccchh---HHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCC--c
Q 009148 177 YFDKITELAVSRSDSVLFKQALVSLATDSGL--HPLVPY---FTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI--Q 249 (542)
Q Consensus 177 Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL--~qLLPY---fv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L--~ 249 (542)
+...+.+.+ +.++...|+.|++.|..=... ..+.|| ++.++...... .+-......+....++..++.+ .
T Consensus 216 ~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~ 292 (852)
T 4fdd_A 216 FIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDV 292 (852)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHH
Confidence 344444443 344556777666555421110 112233 23333322222 2334444456666677665543 3
Q ss_pred cccchhhHHHHHHHHHhccc---------cCCCCCC----ccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009148 250 IEPYLHQLMPSVVTCLVAKR---------LGNRLAD----NHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL 316 (542)
Q Consensus 250 LepYLHqLlPsvLTCll~k~---------l~~~~~~----~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 316 (542)
+.+|+..++|.++.++.... ......+ ..|.+|..|+..|+.++..++. .+-+.++..+...+.
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~ 369 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLF 369 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhc
Confidence 68999999999998874221 1111111 5899999999999999999984 466778888877777
Q ss_pred CCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHH
Q 009148 317 DPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 317 Dp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a 383 (542)
|+ ....+.+|+.+|..++...-. .+-|+++.++..|-+.+.+. +..+|..|-.+.|-+...
T Consensus 370 ~~--~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~---~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 370 HH--EWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDK---KALVRSITCWTLSRYAHW 430 (852)
T ss_dssp CS--SHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHTHHH
T ss_pred CC--CHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHH
Confidence 54 688999999999999764443 34578888877777666432 334555555555444443
No 41
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.98 E-value=0.017 Score=63.84 Aligned_cols=124 Identities=8% Similarity=0.106 Sum_probs=81.4
Q ss_pred cccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009148 250 IEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAV 329 (542)
Q Consensus 250 LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI 329 (542)
+.+|+..++|.++.++-... ....++.|.+|..|+.+|..++..++. .+-+.+...+...+.|+ ....+.+|+
T Consensus 318 ~~~~~~~il~~ll~~l~~~~--~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~~~l~~~l~~~l~~~--~~~~r~~a~ 390 (861)
T 2bpt_A 318 ALSSIKDVVPNLLNLLTRQN--EDPEDDDWNVSMSAGACLQLFAQNCGN---HILEPVLEFVEQNITAD--NWRNREAAV 390 (861)
T ss_dssp HHHHHHHHHHHHHHHTTCCC--CC-CCCCCHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--cccccccCcHHHHHHHHHHHHHHHccH---hHHHHHHHHHHHHcCCC--ChhHHHHHH
Confidence 46677889998888763321 112356799999999999999999983 45667888887777653 577899999
Q ss_pred HHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHH
Q 009148 330 QGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 330 ~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a 383 (542)
.+|..++...-...+.|+++.+...|-..+.+ .+..+|..+-.+.|.+...
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMND---QSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHH
Confidence 99999864322223456666666655554433 2334444444444444433
No 42
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.95 E-value=0.0053 Score=67.91 Aligned_cols=172 Identities=17% Similarity=0.220 Sum_probs=110.4
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCC-CccccchhhHHHHHHHHHhccccCCCCC
Q 009148 197 ALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIEPYLHQLMPSVVTCLVAKRLGNRLA 275 (542)
Q Consensus 197 AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~k~l~~~~~ 275 (542)
+|..|...-+ ..++|.++.++.+.+.. .+...-...+..+.++..... -.+.+|+.+++|.++.++ .
T Consensus 351 ~l~~l~~~~~-~~~~~~~l~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l---------~ 418 (876)
T 1qgr_A 351 CLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM---------K 418 (876)
T ss_dssp HHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHH---------T
T ss_pred HHHHHHHHCc-HhhHHHHHHHHHHHccC--CChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh---------C
Confidence 3344444333 35677777777665543 456666667778888887654 346789999999999886 2
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHH-------------
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHV--YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV------------- 340 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~--y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aV------------- 340 (542)
+.++.+|..|+..|+.++..++.. ....-+.++..+.+.+.|+ ....-.|..+|..+....-
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 567999999999999999987652 1234567888888888763 3445667777777755432
Q ss_pred HHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHH
Q 009148 341 RLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQA 383 (542)
Q Consensus 341 r~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a 383 (542)
...+.|+++.++..|...+......+...|..+..+.+.|..+
T Consensus 496 ~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 496 TYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp CCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred chhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 1246788888887776655432111223444444444444443
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=96.93 E-value=0.002 Score=57.61 Aligned_cols=61 Identities=18% Similarity=0.251 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.|..+.++++-+ .+|.++...+-..|++....|..||.+++++.||+|||..||..|.+++
T Consensus 38 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 477888899876 6999999999999999999999999999999999999999999999863
No 44
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.84 E-value=0.0088 Score=66.02 Aligned_cols=174 Identities=15% Similarity=0.169 Sum_probs=115.9
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCC-CccccchhhHHHHHHHHHhccccCCCC
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIEPYLHQLMPSVVTCLVAKRLGNRL 274 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~k~l~~~~ 274 (542)
.+|..|...-| ..++|.++.++.+.+.. .++..-...+..+.++..... -.+.+|+.+++|.++.++
T Consensus 353 ~~L~~l~~~~~-~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l--------- 420 (861)
T 2bpt_A 353 ACLQLFAQNCG-NHILEPVLEFVEQNITA--DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM--------- 420 (861)
T ss_dssp HHHHHHHHHHG-GGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGG---------
T ss_pred HHHHHHHHHcc-HhHHHHHHHHHHHHcCC--CChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc---------
Confidence 34444454444 56677777777766643 356666667788888887654 456788888888887764
Q ss_pred CCccHHHHHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHH---HHhhccChH
Q 009148 275 ADNHWELRDFTAKLVAAICKRYGHVY--NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVV---RLLLLPNLG 349 (542)
Q Consensus 275 ~~~hw~LRd~AA~lL~~I~~k~~~~y--~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aV---r~lilP~L~ 349 (542)
.+.++.+|+.|+..|+.++..++... ...-+.++..+.+.+.|+ ......|..+|..+....- ...+-|+++
T Consensus 421 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~ 497 (861)
T 2bpt_A 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH---PKVATNCSWTIINLVEQLAEATPSPIYNFYP 497 (861)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 24589999999999999999876532 334567888888888764 4566677777777754422 244668888
Q ss_pred HHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 009148 350 PYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 350 ~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
.++..|-+.+... ..+...|..+.+..+.+....|
T Consensus 498 ~il~~L~~~l~~~-d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 498 ALVDGLIGAANRI-DNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHHHTCS-CCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCc-CcchHHHHHHHHHHHHHHHHcc
Confidence 8887776655421 1123456666666666665543
No 45
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=96.84 E-value=0.0026 Score=57.07 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.|..+.++++-+ .+|.++...+-..|++....|..||.+++++.||+|||..||..|.+++
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 478888999876 6999999999999999999999999999999999999999999999873
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.68 E-value=0.023 Score=63.78 Aligned_cols=150 Identities=21% Similarity=0.235 Sum_probs=109.2
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCC
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLA 275 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~ 275 (542)
.+|..|....| ..++|.++.++.+.+.. .+...-...+..+.++..+..-.+++|+.+++|.++.++ .
T Consensus 343 ~~L~~la~~~~-~~~~~~l~~~l~~~l~~--~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l---------~ 410 (852)
T 4fdd_A 343 AALDVLANVYR-DELLPHILPLLKELLFH--HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL---------S 410 (852)
T ss_dssp HHHHHHHHHHG-GGGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHT---------T
T ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHc---------C
Confidence 34455555444 46777777777766654 366677778888888888877688899999999999886 3
Q ss_pred CccHHHHHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHh
Q 009148 276 DNHWELRDFTAKLVAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSL 354 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~-~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~ 354 (542)
+.++.+|.-|+..|+.++...+. ........++..|.+.+.|+ ....+..|..+|..+....-. .+.|+++.+...
T Consensus 411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~ 487 (852)
T 4fdd_A 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEEACT-ELVPYLAYILDT 487 (852)
T ss_dssp CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHH
Confidence 67899999999999999986643 22344567888888888765 456677777777777544333 378888888887
Q ss_pred hhHhHh
Q 009148 355 LEPEML 360 (542)
Q Consensus 355 Le~~l~ 360 (542)
|...+.
T Consensus 488 L~~~l~ 493 (852)
T 4fdd_A 488 LVFAFS 493 (852)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 47
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.67 E-value=0.023 Score=54.05 Aligned_cols=129 Identities=13% Similarity=0.115 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 311 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 311 (542)
+..+-.++..|-. .+++|+.+++|.++.++- +.+-.+|+.|...|..++...+ + ..++..+
T Consensus 78 ~~~l~~la~~l~~----~~~~~~~~ilp~ll~~l~---------d~~~~vr~~a~~aL~~~~~~~~--~----~~ll~~l 138 (242)
T 2qk2_A 78 GKCLALLAKGLAK----RFSNYASACVPSLLEKFK---------EKKPNVVTALREAIDAIYASTS--L----EAQQESI 138 (242)
T ss_dssp HHHHHHHHHHHGG----GGHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTSC--H----HHHHHHH
T ss_pred HHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCC--H----HHHHHHH
Confidence 4444555554422 568999999999998852 3456899999999999988653 2 3566666
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhh----CHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 009148 312 LNALLDPKRALTQHYGAVQGLAAL----GPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQC 387 (542)
Q Consensus 312 ~k~llDp~ksl~t~YGAI~GL~aL----G~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~ 387 (542)
...+.+ ++....-+++..|..+ |++ ....++++.+...|...+.+ .+..+|..|..+.+.+..++|.-
T Consensus 139 ~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~---~~~~~~l~~l~p~l~~~l~D---~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 139 VESLSN--KNPSVKSETALFIARALTRTQPT---ALNKKLLKLLTTSLVKTLNE---PDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHTTC--SCHHHHHHHHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHcC--CChHHHHHHHHHHHHHHHHcCCC---CccHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHcCHH
Confidence 777764 3557777777776663 333 22345666666666665543 34568899999999999999963
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.63 E-value=0.036 Score=61.23 Aligned_cols=120 Identities=12% Similarity=0.066 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 311 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 311 (542)
....++.+.+|+.+-.-.+.+|+.+++|.++.++-.. +++.+|..|..+++.|++.+|......-+.++..+
T Consensus 625 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--------~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l 696 (876)
T 1qgr_A 625 QEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY--------AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC--------TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc--------chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 3345666666666545567899999999999887321 47899999999999999999976666667888888
Q ss_pred HHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 009148 312 LNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360 (542)
Q Consensus 312 ~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 360 (542)
.+.|.++.......--++.++..+... +..-+.|+++.++..|...+.
T Consensus 697 ~~~l~~~~~~~~~~~~~~~~l~~i~~~-~g~~~~~~l~~~~~~l~~~~~ 744 (876)
T 1qgr_A 697 LENLGNENVHRSVKPQILSVFGDIALA-IGGEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHTCTTSCGGGHHHHHHHHHHHHHH-HGGGGGGGHHHHHHHHHHHHT
T ss_pred HHHhCCccccHHhhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHh
Confidence 898876433333333444444333211 111245667777766665443
No 49
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.045 Score=53.39 Aligned_cols=190 Identities=12% Similarity=0.084 Sum_probs=115.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHhhh-c----CCccc-cch--hHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCC
Q 009148 176 LYFDKITELAVSRSDSVLFKQALVSLAT-D----SGLHP-LVP--YFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH 247 (542)
Q Consensus 176 ~Yf~kIt~a~l~~~d~~~~~~AL~sL~t-D----~gL~q-LLP--Yfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~ 247 (542)
.|++.+ ...+-..|++||..|.. - +.+.. -.+ -++.-+...+... .|......-++.+..|...=.
T Consensus 20 ~f~~~l-----~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D-~n~~v~~~A~~al~~la~~l~ 93 (249)
T 2qk1_A 20 DFQERI-----TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKD-ANIQAVALAAQSVELICDKLK 93 (249)
T ss_dssp THHHHH-----TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHh-----hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHhcc
Confidence 355554 23444567788876666 2 22321 112 2333333333111 233333333444444443222
Q ss_pred -Cccc-cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchh--HHHHHHHHHHHHhcCCCCCch
Q 009148 248 -IQIE-PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT--LQTRLTKTLLNALLDPKRALT 323 (542)
Q Consensus 248 -L~Le-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~--L~~RI~~tL~k~llDp~ksl~ 323 (542)
=.++ +|...++|+++..+= +..=.+|+.|...|..||...+..... +. .++..+...|.+ +...
T Consensus 94 ~~~f~~~y~~~llp~ll~~l~---------dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~--k~~~ 161 (249)
T 2qk1_A 94 TPGFSKDYVSLVFTPLLDRTK---------EKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKH--KTPQ 161 (249)
T ss_dssp TTTSCHHHHHHHHHHHHHGGG---------CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTC--SSHH
T ss_pred cccccHHHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcC--CChH
Confidence 2367 999999999997752 223479999999999999987532221 22 366666677653 3568
Q ss_pred hhhhHHHHHHhhCHHHHH--HhhccCh-HHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 009148 324 QHYGAVQGLAALGPNVVR--LLLLPNL-GPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQ 386 (542)
Q Consensus 324 t~YGAI~GL~aLG~~aVr--~lilP~L-~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~ 386 (542)
...+++..|..+=..+-. ..+.|++ +.+...|.+.+.+ .+..+|..|..+.+++..++|.
T Consensus 162 vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D---~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 162 IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND---TQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCH
Confidence 889998888776433321 3345677 7777777776654 3567999999999999999996
No 50
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.20 E-value=0.049 Score=51.72 Aligned_cols=107 Identities=17% Similarity=0.153 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCCCcHHHHH---HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcC--CCCcc
Q 009148 176 LYFDKITELAVSRSDSVLFK---QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN--PHIQI 250 (542)
Q Consensus 176 ~Yf~kIt~a~l~~~d~~~~~---~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~N--p~L~L 250 (542)
.++.-+.+.+ ++.+...|. .||..+-...++..++|.+...+ .+ +|...-...+.++..++.+ |.-..
T Consensus 98 ~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l----~~--~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLEAQQESIVESL----SN--KNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----TC--SCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cC--CChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 3444444444 334445554 55566666677777777765544 22 3555666678888887766 44567
Q ss_pred ccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCC
Q 009148 251 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH 298 (542)
Q Consensus 251 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~ 298 (542)
.+|++.++|.++.|+ .|.+|.+|+.|...++.|+...|.
T Consensus 171 ~~~l~~l~p~l~~~l---------~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTL---------NEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHHH---------TSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHHHcCH
Confidence 899999999999997 377899999999999999988875
No 51
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=96.18 E-value=0.0046 Score=56.60 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=50.8
Q ss_pred CCChHHHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCccCHHHHHHHHHhc
Q 009148 3 IVPKETVEVIAQSIG-ISNFSTDAALALAPDVEYRIREIMQEAIKCM-RHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 3 ~~p~e~Ik~iAes~G-i~~Lsdeaa~~La~dVEyrlreIiqeA~kfm-rhskR~~Lt~~DI~~AL~~~ 68 (542)
.||..-|++|.++-. +..++.+|...++..+|+.|.+++.+|...+ +..||++|+..||..|+...
T Consensus 19 ~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~ 86 (140)
T 2byk_A 19 FLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN 86 (140)
T ss_dssp ----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence 478889999987653 2469999999999999999999999999999 99999999999999999853
No 52
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.05 E-value=0.018 Score=55.08 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGI-SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi-~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.|..+.++++- ..+|+++...+..-+...+..|..||.+++++.+|+|+|..||..|.+.
T Consensus 8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl 68 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL 68 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 47788888875 5699999999999999999999999999999999999999999999985
No 53
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.64 E-value=0.066 Score=44.13 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=59.2
Q ss_pred CCChHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGIS-NFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~-~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++++..+..+.+++.-. .+++++...|.+-+...+..++..|.+.++|.|-.+|.+.||...|+.
T Consensus 5 vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 57888888888887554 599999999999999999999999999999999999999999999975
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=95.05 E-value=0.58 Score=54.66 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHhhcCCCC-ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCC-------Cch
Q 009148 230 SLLFALMRVVWNLLQNPHI-QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-------VYN 301 (542)
Q Consensus 230 ~~L~~lmrmv~ALl~Np~L-~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~-------~y~ 301 (542)
......+..+..++.+-.- .+.+|+..++|.++.|+ .+..|.+|..|...++.+++.++. ...
T Consensus 492 ~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l---------~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 562 (1230)
T 1u6g_C 492 NLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV---------GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562 (1230)
T ss_dssp HHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH---------TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH---------cccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 4444556666666654322 26789999999999876 245689999999999999999986 444
Q ss_pred hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhH
Q 009148 302 TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEP 357 (542)
Q Consensus 302 ~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~ 357 (542)
.....|+..+.+.|.+.+.....+-.|+.+|..|-..+=.. +.|+++.++..|.+
T Consensus 563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-~~~~~~~~l~~L~~ 617 (1230)
T 1u6g_C 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN-LGSDLPNTLQIFLE 617 (1230)
T ss_dssp HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG-CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch-hhhhHHHHHHHHHH
Confidence 45567888888888544455566777777777663322111 33555555554443
No 55
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=94.65 E-value=0.16 Score=42.97 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccCHHHHHHHHHhcC
Q 009148 2 SIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSR-RTTLTTDDVDEALKLRN 69 (542)
Q Consensus 2 s~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk-R~~Lt~~DI~~AL~~~n 69 (542)
|-+++..||.+..++--.+++++++..++--....+-+|+++|.+++.+-+ +.-|.+.||..|.+.+.
T Consensus 15 s~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 15 SAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 458999999999888777899999999999999999999999999999875 45899999999998754
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.17 E-value=0.18 Score=50.91 Aligned_cols=91 Identities=24% Similarity=0.358 Sum_probs=70.9
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCC-CccccchhhHHHHHHHHHhccccCCCC
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPH-IQIEPYLHQLMPSVVTCLVAKRLGNRL 274 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~-L~LepYLHqLlPsvLTCll~k~l~~~~ 274 (542)
.+|..|...-| ..++|.++.++.+.+.. .+...-...+..+.++..... =.+.+|+.+++|.++.++
T Consensus 350 ~~L~~l~~~~~-~~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l--------- 417 (462)
T 1ibr_B 350 VCLMLLATCCE-DDIVPHVLPFIKEHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM--------- 417 (462)
T ss_dssp HHHHHHHHHTT-TTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG---------
T ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---------
Confidence 34555555555 67888888888776654 467777778888889988665 357899999999999886
Q ss_pred CCccHHHHHHHHHHHHHHHHHhCC
Q 009148 275 ADNHWELRDFTAKLVAAICKRYGH 298 (542)
Q Consensus 275 ~~~hw~LRd~AA~lL~~I~~k~~~ 298 (542)
.+.|+.+|..|+..|+.+|..++.
T Consensus 418 ~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 418 KDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHhccc
Confidence 246789999999999999999876
No 57
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.086 Score=51.88 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred HHHHHHHHcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIG----ISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~G----i~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-|+.||+... --+...+|..+|-+..|..|-.+.+++..|+.|+||-||.+.||..|.+.++.
T Consensus 20 LVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~ 86 (235)
T 2l5a_A 20 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ 86 (235)
T ss_dssp HHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred HHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence 4677887654 23789999999999999999999999999999999999999999999999874
No 58
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.01 E-value=0.96 Score=47.14 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=71.5
Q ss_pred cCCCcHHHHHHHHHHhhh---cCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHH
Q 009148 186 VSRSDSVLFKQALVSLAT---DSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVV 262 (542)
Q Consensus 186 l~~~d~~~~~~AL~sL~t---D~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvL 262 (542)
...++...|+.|.+.|.. .-+-..+.++++.++.+-... .+...-....+++..+...-. +.+...++|.+.
T Consensus 96 ~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~--~~~~~R~~a~~~l~~~~~~~~---~~~~~~l~~~l~ 170 (588)
T 1b3u_A 96 ATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG--DWFTSRTSACGLFSVCYPRVS---SAVKAELRQYFR 170 (588)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTC--SSHHHHHHHGGGHHHHTTTSC---HHHHHHHHHHHH
T ss_pred HhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHH
Confidence 344455677766655544 222223344455555332222 122222223334444432211 223445666555
Q ss_pred HHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 263 TCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 263 TCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
.++ .++++.+|..|+..|+.+++.++.. ...+.+...+.+.+.|+. ...+.+|+.+|..++.
T Consensus 171 ~l~---------~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~--~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 171 NLC---------SDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQ--DSVRLLAVEACVNIAQ 232 (588)
T ss_dssp HHH---------TCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSC--HHHHTTHHHHHHHHHH
T ss_pred HHh---------CCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHHHH
Confidence 432 2567888999999999888877642 234556666666666653 4666777777777643
No 59
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.57 E-value=1.1 Score=52.39 Aligned_cols=186 Identities=14% Similarity=0.135 Sum_probs=109.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHhhhcC---Ccc---ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCcccc
Q 009148 179 DKITELAVSRSDSVLFKQALVSLATDS---GLH---PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEP 252 (542)
Q Consensus 179 ~kIt~a~l~~~d~~~~~~AL~sL~tD~---gL~---qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Lep 252 (542)
..+.+.+.+. |...|..|++.|.+.- ..+ ...++++..+.+.+.. .+...-..-++.+..|... + =++
T Consensus 9 ~~lL~~l~s~-d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~--~-~~~ 82 (1230)
T 1u6g_C 9 SNLLEKMTSS-DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSK--V-KEY 82 (1230)
T ss_dssp HHHHHHTTCS-SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTT--S-CHH
T ss_pred HHHHHhcCCC-CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHh--C-CHH
Confidence 3444445444 4567777777665431 111 1122333333333332 3343333344455555542 2 136
Q ss_pred chhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCC------chhHHHHHHHHHHHHhcCCCCCchhhh
Q 009148 253 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV------YNTLQTRLTKTLLNALLDPKRALTQHY 326 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~------y~~L~~RI~~tL~k~llDp~ksl~t~Y 326 (542)
|+.++++.++.++. +++-.+|..|+..|+.|+..++.. .....+.++..|.+.+.| ........
T Consensus 83 ~~~~i~~~Ll~~l~---------d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~ 152 (1230)
T 1u6g_C 83 QVETIVDTLCTNML---------SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQL 152 (1230)
T ss_dssp HHHHHHHHHHHHTT---------CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHH
T ss_pred HHHHHHHHHHHHhc---------CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHH
Confidence 88888888888752 233477999999999999988764 123466778888888875 34567888
Q ss_pred hHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHH
Q 009148 327 GAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAA 384 (542)
Q Consensus 327 GAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~ 384 (542)
||+..|..+-... ...+.|+++.+...+-+.+.+. +...|..|-++.+.+....
T Consensus 153 ~al~~l~~~~~~~-~~~l~~~~~~ll~~l~~~L~~~---~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 153 EALDIMADMLSRQ-GGLLVNFHPSILTCLLPQLTSP---RLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHT-CSSCTTTHHHHHHHHGGGGGCS---SHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhc
Confidence 9998888763221 1245688888888777766532 2345666666666555443
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=93.42 E-value=0.97 Score=47.11 Aligned_cols=114 Identities=9% Similarity=0.078 Sum_probs=62.2
Q ss_pred chhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009148 253 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGL 332 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL 332 (542)
+...++|.++.++ .+.+|.+|+.|+..++.++..+|... ....++..+.+.+.| .+...+-.++.++
T Consensus 438 ~~~~l~~~l~~~l---------~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~--~~~~~R~~a~~~l 504 (588)
T 1b3u_A 438 FDEKLNSLCMAWL---------VDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD--PNYLHRMTTLFCI 504 (588)
T ss_dssp CCHHHHHHHHHGG---------GCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC--CCHHHHHHHHHHH
Confidence 3345677666553 25678999999999999999888632 344555555554443 3455566666666
Q ss_pred HhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 009148 333 AALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 333 ~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
..++...-... +++.+...|...+.+ .+..+|..+.++.+.+...+|
T Consensus 505 ~~l~~~~~~~~---~~~~~~~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 505 NVLSEVCGQDI---TTKHMLPTVLRMAGD---PVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHHHHHH---HHHHTHHHHHHGGGC---SCHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHhcCHHH---HHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhc
Confidence 66544321111 112222222222221 223456566666666655433
No 61
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=91.90 E-value=2.6 Score=40.80 Aligned_cols=145 Identities=9% Similarity=0.098 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHH---HhhhcCCcc--ccc-hhHHHHHHHHhhccCC--CHHHHHHHHHHHHHhhc--C
Q 009148 176 LYFDKITELAVSRSDSVLFKQALV---SLATDSGLH--PLV-PYFTYFVADEVSRGLN--NYSLLFALMRVVWNLLQ--N 245 (542)
Q Consensus 176 ~Yf~kIt~a~l~~~d~~~~~~AL~---sL~tD~gL~--qLL-PYfv~FI~e~V~~nl~--nl~~L~~lmrmv~ALl~--N 245 (542)
..++-+...+-...+...+..|+. .|.+ |++ .+- ||....+-.-+ ..++ .-.........+.+++. |
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~llp~ll-~~l~dkk~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLVFTPLL-DRTKEKKPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHHHHHHH-HGGGCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHcc
Confidence 335555555534556556655554 4443 333 343 56555443222 2222 23333445555566665 5
Q ss_pred CCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCC---chhHH-HHHHHHHHHHhcCCCCC
Q 009148 246 PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHV---YNTLQ-TRLTKTLLNALLDPKRA 321 (542)
Q Consensus 246 p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~---y~~L~-~RI~~tL~k~llDp~ks 321 (542)
| ....+|+..+++.++.++- ...|.+|..+..+|+.++...+.. +...- +.|+..+.+.+-|++.
T Consensus 137 ~-~~~~~~l~~ll~~l~~~l~---------~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~- 205 (249)
T 2qk1_A 137 P-LASSGRNEDMLKDILEHMK---------HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQP- 205 (249)
T ss_dssp T-TCTTCTTHHHHHHHHHHTT---------CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSH-
T ss_pred c-cccCCcHHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCH-
Confidence 5 3355679999999887752 225899999999999999998853 22233 6677778888876643
Q ss_pred chhhhhHHHHHHhh
Q 009148 322 LTQHYGAVQGLAAL 335 (542)
Q Consensus 322 l~t~YGAI~GL~aL 335 (542)
..+=.|+-+|..+
T Consensus 206 -~VR~aA~~~l~~i 218 (249)
T 2qk1_A 206 -AIRTIGFESFAIL 218 (249)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 3444555555553
No 62
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.29 E-value=1 Score=37.74 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 3 IVPKETVEVIAQSIGI----SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi----~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.+|+++|.+|.. ..+ +++++||...+++.++-.++|.+..|..-++-.....|..+|++..+-
T Consensus 12 ~i~~~li~ril~-~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 12 GFRKELVSRLLH-LHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp CCCHHHHHHHHH-TTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 589999999999 666 479999999999999999999999999988877888999999998764
No 63
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.48 E-value=3.5 Score=46.86 Aligned_cols=147 Identities=10% Similarity=0.110 Sum_probs=90.6
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHhhc---cCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCC
Q 009148 197 ALVSLATDSGLHPLVPYFTYFVADEVSR---GLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNR 273 (542)
Q Consensus 197 AL~sL~tD~gL~qLLPYfv~FI~e~V~~---nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~ 273 (542)
+|..+..--| ..++|.+..|+.+.+.. +-.++......+..+.++.....-...+++.++++ ++..+ ..
T Consensus 444 ~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l-----~~- 515 (971)
T 2x1g_F 444 TFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEI-----PY- 515 (971)
T ss_dssp HHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHS-----CT-
T ss_pred HHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhc-----Cc-
Confidence 3444444434 56778888888776653 12566777777888888887766556678887777 43332 21
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhh-hhHHHHHHhhCHHHHHHhhccChHHHH
Q 009148 274 LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQH-YGAVQGLAALGPNVVRLLLLPNLGPYL 352 (542)
Q Consensus 274 ~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~-YGAI~GL~aLG~~aVr~lilP~L~~y~ 352 (542)
.+.|-.+|.-|..+|+.++.-+... +..-+.++..+.+.| | .....+ -+|+.-|. +..+..+.|+++.+.
T Consensus 516 -~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~----~~~~~~l~p~~~~ll 586 (971)
T 2x1g_F 516 -EKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-N--SSMSAQATLGLKELC----RDCQLQLKPYADPLL 586 (971)
T ss_dssp -TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHH----HHCHHHHHHHHHHHH
T ss_pred -cccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHH----HHHHHhccccHHHHH
Confidence 1347799999999999999877643 355567777788877 5 222222 24444443 344566789999998
Q ss_pred HhhhHhHh
Q 009148 353 SLLEPEML 360 (542)
Q Consensus 353 ~~Le~~l~ 360 (542)
..|...+.
T Consensus 587 ~~l~~~l~ 594 (971)
T 2x1g_F 587 NACHASLN 594 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88876554
No 64
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=90.01 E-value=0.2 Score=41.12 Aligned_cols=45 Identities=11% Similarity=0.274 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSR 52 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhsk 52 (542)
-|..|+...|++++++|++..++-.+|.|+|.+++.-+..++|-.
T Consensus 11 ri~~I~~k~gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~ 55 (75)
T 1h3o_A 11 RILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEKISETAQQKN 55 (75)
T ss_dssp HHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhcCCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999999888888753
No 65
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.77 E-value=2.9 Score=47.22 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=91.6
Q ss_pred cccchhHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHH
Q 009148 208 HPLVPYFTYFVADEVSR--GLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFT 285 (542)
Q Consensus 208 ~qLLPYfv~FI~e~V~~--nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~A 285 (542)
..+++.+..++.+.+.. +-.++......+..+.++.....-...+++.++++. +. .++. +|-.+|..+
T Consensus 440 ~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~----l~--~l~~----~~~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGL----IP--RISI----SNVQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHH----GG--GSCC----CSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH----HH--hCCC----CcHHHHHHH
Confidence 35667777777766632 225777777888888888877655556777766662 22 2322 477899999
Q ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHh
Q 009148 286 AKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEML 360 (542)
Q Consensus 286 A~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~ 360 (542)
..+++..++-+... +..-+.++..+.+.|.| ....--|...|..|-.+ .+..+.|+++.+...|...+.
T Consensus 510 ~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l~~----~~V~~~A~~al~~l~~~-~~~~l~p~~~~il~~l~~~l~ 578 (963)
T 2x19_B 510 MFTIGALSEWLADH-PVMINSVLPLVLHALGN----PELSVSSVSTLKKICRE-CKYDLPPYAANIVAVSQDVLM 578 (963)
T ss_dssp HHHHHHTHHHHHHC-HHHHTTTHHHHHHHTTC----GGGHHHHHHHHHHHHHH-TGGGCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-HHHHHHHHHHHHHHhCC----chHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHhc
Confidence 99999998765432 34445677777777755 23334456666666543 456688999999998876554
No 66
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=89.10 E-value=4.2 Score=46.41 Aligned_cols=149 Identities=13% Similarity=0.036 Sum_probs=94.2
Q ss_pred HHHHhhhcCCccccchhHHHHHHHHhhc----cCCCHHHHHHHHHHHHHhhcC------------CCCccccchhh-HHH
Q 009148 197 ALVSLATDSGLHPLVPYFTYFVADEVSR----GLNNYSLLFALMRVVWNLLQN------------PHIQIEPYLHQ-LMP 259 (542)
Q Consensus 197 AL~sL~tD~gL~qLLPYfv~FI~e~V~~----nl~nl~~L~~lmrmv~ALl~N------------p~L~LepYLHq-LlP 259 (542)
.|..|...-+ ..++|-+..|+.+.+.. ...|+......+.++.|+..+ +.+.+++++.+ ++|
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH
Confidence 3445555544 56677777776655542 235677777788888888643 22245555432 333
Q ss_pred HHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH--
Q 009148 260 SVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP-- 337 (542)
Q Consensus 260 svLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~-- 337 (542)
-+ .. +...|-.+|..|..++++++..+. +..-..++..+.+.|.|+ +...+--|..+|..|-.
T Consensus 463 ~l---------~~-~~~~~p~vr~~a~~~lg~~~~~~~---~~~l~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~ 527 (960)
T 1wa5_C 463 DL---------TS-NNIPHIILRVDAIKYIYTFRNQLT---KAQLIELMPILATFLQTD--EYVVYTYAAITIEKILTIR 527 (960)
T ss_dssp HH---------HC-SSCSCHHHHHHHHHHHHHTGGGSC---HHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCB
T ss_pred Hh---------cC-CCCCCceehHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcc
Confidence 22 11 113478999999999999988763 455677888888888876 45555666666666543
Q ss_pred --------HHHHHhhccChHHHHHhhhHhHhh
Q 009148 338 --------NVVRLLLLPNLGPYLSLLEPEMLL 361 (542)
Q Consensus 338 --------~aVr~lilP~L~~y~~~Le~~l~~ 361 (542)
+.-+..+.|+++.++..|-..+..
T Consensus 528 ~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 528 ESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp SCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred cccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 113566889999999988765543
No 67
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=89.08 E-value=1.4 Score=36.54 Aligned_cols=64 Identities=23% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHc---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 3 IVPKETVEVIAQSI---GISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 3 ~~p~e~Ik~iAes~---Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.+|+++|.+|.+.. .-+++++||.+.+++.++-.++|.+..|..-++-.+-..|..+|++..+-
T Consensus 8 ~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 8 GFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp CCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 58999999998872 13479999999999999999999999999998877888999999998764
No 68
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=84.40 E-value=1.9 Score=38.91 Aligned_cols=141 Identities=12% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhhhcC----Ccc------ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhc-C
Q 009148 177 YFDKITELAVSRSDSVLFKQALVSLATDS----GLH------PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-N 245 (542)
Q Consensus 177 Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~----gL~------qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~-N 245 (542)
+|..+...+. .++...+..|+..|..=. ... ..+|.++.++.+ .+.......+..+..|.. |
T Consensus 13 ~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 13 ELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS------PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCC
Confidence 4555555543 344555655554443221 111 356666666532 245566666777777774 3
Q ss_pred CCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchh
Q 009148 246 PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQ 324 (542)
Q Consensus 246 p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t 324 (542)
+...-.-.-+..+|.++.++- +.+..+|..|+..|+.|+....... .-+...++..|.+.+.++ +...
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v 154 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQI 154 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHc---------CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHH
Confidence 332222222457788887762 2357999999999999985221110 112344667777777754 4566
Q ss_pred hhhHHHHHHhh
Q 009148 325 HYGAVQGLAAL 335 (542)
Q Consensus 325 ~YGAI~GL~aL 335 (542)
..-|+..|..+
T Consensus 155 ~~~a~~aL~~l 165 (210)
T 4db6_A 155 LQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777766
No 69
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=83.87 E-value=2.8 Score=38.84 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=67.1
Q ss_pred cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhc-CCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 210 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 210 LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~-Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
.+|.|+.++.+ .+.......+..+..|.. |+...-.-.-...+|.++.++- ++++.+|..|+..
T Consensus 55 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~ 119 (252)
T 4db8_A 55 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 119 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred cHHHHHHHHcC------CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 45666555432 234555566677777775 3332211111236777776652 2457999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 289 VAAICKRYGHV-YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 289 L~~I~~k~~~~-y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
|+.|+...... -.-+...++..|.+.+.++ +.....-|+.+|..|..
T Consensus 120 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS 167 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT
T ss_pred HHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc
Confidence 99997543322 1223344677788888754 55677888888888843
No 70
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=83.68 E-value=5.2 Score=46.84 Aligned_cols=157 Identities=9% Similarity=0.036 Sum_probs=106.0
Q ss_pred HHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCc-cccchhhHHHHHHHHHhccccCCC
Q 009148 195 KQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQ-IEPYLHQLMPSVVTCLVAKRLGNR 273 (542)
Q Consensus 195 ~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~-LepYLHqLlPsvLTCll~k~l~~~ 273 (542)
+++|..+..--+- .+++.+...+.+.+...-.++..+...+-.+.|+...+.-. ..+++++++|.++.++-.++
T Consensus 434 Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~---- 508 (1023)
T 4hat_C 434 REVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR---- 508 (1023)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc----
Confidence 3555544443232 56677777777666654467888888888899999877654 67999999998887653332
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhh-------cc
Q 009148 274 LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL-------LP 346 (542)
Q Consensus 274 ~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~li-------lP 346 (542)
..+++-.+|+-++-+|+++++=+.. .+..-+.++..+...+.|++.. ..-=|..+|..+..+.-+.++ -|
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~wl~~-~~~~L~~vl~~L~~~l~~~~~~--v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHETHEG--VQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHH-CHHHHHHHHHHHHHHTTCSCHH--HHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHHHHHhhccCCCCCch
Confidence 1245567888999999998876643 3555666777788888765432 233367778888777665554 47
Q ss_pred ChHHHHHhhhHhH
Q 009148 347 NLGPYLSLLEPEM 359 (542)
Q Consensus 347 ~L~~y~~~Le~~l 359 (542)
++..+...+....
T Consensus 586 ~~~~il~~l~~~~ 598 (1023)
T 4hat_C 586 FIQTIIRDIQKTT 598 (1023)
T ss_dssp HHHHHHHTHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7777777666544
No 71
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=83.66 E-value=29 Score=34.48 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHhhc---CCCCccccc-hhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchh
Q 009148 227 NNYSLLFALMRVVWNLLQ---NPHIQIEPY-LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT 302 (542)
Q Consensus 227 ~nl~~L~~lmrmv~ALl~---Np~L~LepY-LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~ 302 (542)
+|...+...+.++.+|+. -....+..| .-.++|.++ .|. | +..=.+|+.+-.++..++.-|+.
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv----eKl-G----d~k~~vR~~~r~il~~l~~v~~~---- 165 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL----LKT-G----EAKDNMRTSVRDIVNVLSDVVGP---- 165 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH----HGG-G----CSSHHHHHHHHHHHHHHHHHHCH----
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH----HHh-C----CChHHHHHHHHHHHHHHHHHCCH----
Confidence 365565555555555532 234455555 356666554 443 3 33448899999999999987753
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh----CHHHHHHhhccChHHHH---HhhhHhHhhhhhhhhhhhhhHHH
Q 009148 303 LQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL----GPNVVRLLLLPNLGPYL---SLLEPEMLLEKQKNEVKRHEAWR 375 (542)
Q Consensus 303 L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL----G~~aVr~lilP~L~~y~---~~Le~~l~~~~~~~~~~r~ea~~ 375 (542)
+++...+...|. +|+.-+.-|.+.-+..+ |.. | ..+. ..|-..+. ..|..+|..|-.
T Consensus 166 --~~v~~~l~~g~k--sKN~R~R~e~l~~l~~li~~~G~~-------~--~~~l~~~~~ia~ll~---D~d~~VR~aAl~ 229 (266)
T 2of3_A 166 --LKMTPMLLDALK--SKNARQRSECLLVIEYYITNAGIS-------P--LKSLSVEKTVAPFVG---DKDVNVRNAAIN 229 (266)
T ss_dssp --HHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHHCSG-------G--GGGGCHHHHHGGGGG---CSSHHHHHHHHH
T ss_pred --HHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHhcCCC-------c--cccccchHHHHHHHc---CCCHHHHHHHHH
Confidence 457777888885 67888888887776665 433 1 1122 22222222 256679999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 009148 376 VYGALLQAAGQCIYDRLK 393 (542)
Q Consensus 376 v~gaLl~a~g~~~~~~~~ 393 (542)
|...+..-+|.-++..+.
T Consensus 230 ~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 230 VLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHHHHHHTTHHHHHHC
T ss_pred HHHHHHHHhhHHHHHHHh
Confidence 999999999999988874
No 72
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=83.32 E-value=3.8 Score=37.45 Aligned_cols=110 Identities=13% Similarity=0.075 Sum_probs=67.2
Q ss_pred cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcC-CCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 210 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN-PHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 210 LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~N-p~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
.+|.++.++.+ .+.......+..+..|..+ +...-...-+..+|.++.++- ++...+|..|+..
T Consensus 45 ~i~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---------~~~~~v~~~a~~~ 109 (252)
T 4hxt_A 45 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 109 (252)
T ss_dssp HHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSSHHHHHHHHHH
T ss_pred CHHHHHHHHhC------CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 46666655532 3455566677777777766 322222222346777777652 2457999999999
Q ss_pred HHHHHHHhCC-CchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 289 VAAICKRYGH-VYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 289 L~~I~~k~~~-~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
|+.++..... .-.-+...++..+.+.+.+++ ......|+..|..|.
T Consensus 110 L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~--~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 110 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTD--SEVQKEAARALANIA 156 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSC--HHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC--HHHHHHHHHHHHHHH
Confidence 9999852211 011122245667777776543 667788888888884
No 73
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=82.10 E-value=19 Score=37.66 Aligned_cols=111 Identities=11% Similarity=0.073 Sum_probs=69.5
Q ss_pred cccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccc-cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHH
Q 009148 208 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 286 (542)
Q Consensus 208 ~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 286 (542)
...+|.|+..+.+ .+.......+..+..|..+..-+-+ ..-+.++|.++.++-. ....+|..|+
T Consensus 172 ~g~i~~Lv~lL~~------~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~ 236 (530)
T 1wa5_B 172 ADAVPLFIQLLYT------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---------NKPSLIRTAT 236 (530)
T ss_dssp TTCHHHHHHHHHH------CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---------CCHHHHHHHH
T ss_pred CCCHHHHHHHHcC------CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---------CCHHHHHHHH
Confidence 3568888888865 2455555666666677654321111 1123577777776522 4578999999
Q ss_pred HHHHHHHHHh-CCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 287 KLVAAICKRY-GHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 287 ~lL~~I~~k~-~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
..|+.+|... ...-......++..|.+.+.+++ .....-|+..|..|
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d--~~v~~~a~~~L~~L 284 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD--TETLVDACWAISYL 284 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCC--HHHHHHHHHHHHHH
Confidence 9999999754 22223344557777778776543 45666677777776
No 74
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=82.00 E-value=4.7 Score=43.54 Aligned_cols=159 Identities=11% Similarity=0.093 Sum_probs=83.9
Q ss_pred HHHHHHHHH---HhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhc
Q 009148 191 SVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVA 267 (542)
Q Consensus 191 ~~~~~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~ 267 (542)
...+.+||+ .+.++..++.+++.+..|+.+ .+...-..+.+.+..+..+ ..+.....++.++..+-
T Consensus 332 ~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~------~d~~~r~~~v~aI~~la~~----~~~~~~~~v~~Ll~ll~- 400 (591)
T 2vgl_B 332 IYVKLEKLDIMIRLASQANIAQVLAELKEYATE------VDVDFVRKAVRAIGRCAIK----VEQSAERCVSTLLDLIQ- 400 (591)
T ss_dssp HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTS------SCHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHh----ChhHHHHHHHHHHHHHc-
Confidence 344555554 344555566666666555432 1233333333444444433 12233444454444431
Q ss_pred cccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccC
Q 009148 268 KRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPN 347 (542)
Q Consensus 268 k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~ 347 (542)
+....+|+.+...+..|++++.. ++..++..|.+.+.+. .....+..+++.|.++|... ++
T Consensus 401 --------~~~~~v~~e~i~~l~~ii~~~p~----~~~~~v~~L~~~l~~~-~~~~~~~~~~wilGey~~~~------~~ 461 (591)
T 2vgl_B 401 --------TKVNYVVQEAIVVIRDIFRKYPN----KYESIIATLCENLDSL-DEPDARAAMIWIVGEYAERI------DN 461 (591)
T ss_dssp --------TCCHHHHHHHHHHHHHHHHHSCS----SCCTTHHHHHHTTTTC-CSHHHHHHHHHHHHTTCTTC------TT
T ss_pred --------ccchHHHHHHHHHHHHHHHHCcc----hHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHcccccc------cC
Confidence 12346777788888888887654 4445556666665443 33345788888888888753 22
Q ss_pred hHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 009148 348 LGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCIY 389 (542)
Q Consensus 348 L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~~ 389 (542)
.+.+++.+-.... .+-..|..+++.|+.++..
T Consensus 462 ~~~~l~~l~~~~~----------~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 462 ADELLESFLEGFH----------DESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHHSTTCS----------SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc----------cCCHHHHHHHHHHHHHHHh
Confidence 3333333322111 1234577788888877765
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=81.36 E-value=15 Score=39.64 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=55.9
Q ss_pred cccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHH
Q 009148 250 IEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAV 329 (542)
Q Consensus 250 LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI 329 (542)
.......++|.+..|+ .+.+..+|..|+..+..|++.+....+. ..++..+.+.|.| ......++|+
T Consensus 115 ~~~~~~~l~~~l~~~L---------~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~A~ 181 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCL---------KDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIAD--SNPMVVANAV 181 (591)
T ss_dssp SGGGHHHHHHHHHHHS---------SCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSC--SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---------CCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCC--CChhHHHHHH
Confidence 3345556778888876 2557899999999999999965442221 3577777777765 4578889999
Q ss_pred HHHHhhCHH
Q 009148 330 QGLAALGPN 338 (542)
Q Consensus 330 ~GL~aLG~~ 338 (542)
..|..++.+
T Consensus 182 ~aL~~i~~~ 190 (591)
T 2vgl_B 182 AALSEISES 190 (591)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhh
Confidence 999998764
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=81.26 E-value=9.4 Score=36.78 Aligned_cols=128 Identities=17% Similarity=0.197 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcC---CCCccccch
Q 009148 178 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQN---PHIQIEPYL 254 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~N---p~L~LepYL 254 (542)
...+++-+++......+..|++.|-.=-........++..+..... -+|.......+..+..++.+ ..+...+.+
T Consensus 104 l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l 181 (278)
T 4ffb_C 104 TPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL 181 (278)
T ss_dssp HHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH
Confidence 3334444555555555655555443221111122223333333322 25666666666666666665 445566667
Q ss_pred hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc--------hhHHHHHHHHHHHHhc
Q 009148 255 HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY--------NTLQTRLTKTLLNALL 316 (542)
Q Consensus 255 HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y--------~~L~~RI~~tL~k~ll 316 (542)
-.+++.+..|+= +..=.+|+-|.+++..+++..|... .+|++-..+.|-+.|-
T Consensus 182 ~~i~~~l~k~l~---------d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~ 242 (278)
T 4ffb_C 182 PELLKHVPQLAG---------HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFA 242 (278)
T ss_dssp HHHGGGHHHHHT---------CSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh---------CCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHH
Confidence 777777776651 2234899999999999999888532 5566666666666653
No 77
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=81.10 E-value=7.4 Score=40.77 Aligned_cols=111 Identities=12% Similarity=0.059 Sum_probs=71.9
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCC-CCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP-HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np-~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
..+|.++..+.+ .+.......+..+..|..+. ...-..+...++|.++.++- +....+|..|+.
T Consensus 215 ~~l~~L~~ll~~------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---------~~d~~v~~~a~~ 279 (530)
T 1wa5_B 215 NAMEPILGLFNS------NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---------SMDTETLVDACW 279 (530)
T ss_dssp TCHHHHHHGGGS------CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---------CCCHHHHHHHHH
T ss_pred CcHHHHHHHhcc------CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---------CCCHHHHHHHHH
Confidence 467777666543 46667777888888888774 22234456788888887652 234789999999
Q ss_pred HHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 288 LVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 288 lL~~I~~k~~~~y~-~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
+|+.++........ -+...++..|...+.++ .......|+..|..+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~ 327 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIV 327 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHH
Confidence 99999853211111 11224556677777654 4556677888888774
No 78
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=80.81 E-value=3.6 Score=47.00 Aligned_cols=103 Identities=8% Similarity=0.088 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhcCCCC--cc--ccchhhHH-HHHHHHHhccc--c---CCCC---------CCccHHHHHHHHHHHH
Q 009148 230 SLLFALMRVVWNLLQNPHI--QI--EPYLHQLM-PSVVTCLVAKR--L---GNRL---------ADNHWELRDFTAKLVA 290 (542)
Q Consensus 230 ~~L~~lmrmv~ALl~Np~L--~L--epYLHqLl-PsvLTCll~k~--l---~~~~---------~~~hw~LRd~AA~lL~ 290 (542)
......+.+..+++..+.. .+ .+|+.+|+ +.++.++.-+. . ...| .++.|.+|..|+.+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 4566677888888776553 12 27888888 67777764321 1 1111 2456799999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHh----cCCCCCchhhhhHHHHHHhh
Q 009148 291 AICKRYGHVYNTLQTRLTKTLLNAL----LDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 291 ~I~~k~~~~y~~L~~RI~~tL~k~l----lDp~ksl~t~YGAI~GL~aL 335 (542)
.++..|+. .+-+-++..+...| .++......+.+|+..+.++
T Consensus 387 ~l~~~~~~---~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algai 432 (960)
T 1wa5_C 387 ELKEKNEV---LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTAL 432 (960)
T ss_dssp HHHHHCHH---HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHH
T ss_pred HHHHHcch---hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 99999983 33333444333333 34556678889999988887
No 79
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=78.85 E-value=21 Score=31.82 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=14.4
Q ss_pred CCcHHHHHHHHHHhhhcCCccccchhHHHHH
Q 009148 188 RSDSVLFKQALVSLATDSGLHPLVPYFTYFV 218 (542)
Q Consensus 188 ~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI 218 (542)
..+...|..|+..|..-.. ...+|.++..+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l 54 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD-ERAVEPLIKAL 54 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC-GGGHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHH
Confidence 3445566666665554322 23445544443
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=78.84 E-value=10 Score=42.83 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Q 009148 234 ALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLN 313 (542)
Q Consensus 234 ~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k 313 (542)
.+-++.+-+-.|+ .|+..+++.++.++-. -.+|..|+..+..+|+.++.....--+.|+..|.+
T Consensus 512 ~l~~~~~~l~~~~-----~~l~~vl~~l~~~l~~-----------~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~ 575 (963)
T 2x19_B 512 TIGALSEWLADHP-----VMINSVLPLVLHALGN-----------PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQD 575 (963)
T ss_dssp HHHHTHHHHHHCH-----HHHTTTHHHHHHHTTC-----------GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCH-----HHHHHHHHHHHHHhCC-----------chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445555454443 5777778777777511 26899999999999998876554445677777777
Q ss_pred HhcCCC---CCchhhhhHHHHHHh-hC
Q 009148 314 ALLDPK---RALTQHYGAVQGLAA-LG 336 (542)
Q Consensus 314 ~llDp~---ksl~t~YGAI~GL~a-LG 336 (542)
.+..+. ......|.|+..+.. +|
T Consensus 576 ~l~~~~~~~~~~~~~~eai~~i~~~~~ 602 (963)
T 2x19_B 576 VLMKQIHKTSQCMWLMQALGFLLSALQ 602 (963)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HhccCCCChHHHHHHHHHHHHHHhcCC
Confidence 776433 233444666666543 44
No 81
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.50 E-value=28 Score=34.75 Aligned_cols=111 Identities=7% Similarity=0.054 Sum_probs=71.4
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCC--CCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP--HIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 286 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np--~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 286 (542)
..+|.|+.++.+ -.+.......+..+..|..+. ... ..++..++|.++.++- +++..+|..|+
T Consensus 149 ~~i~~L~~~l~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~~l~---------~~~~~v~~~a~ 213 (450)
T 2jdq_A 149 NILPPLLQLFSK-----QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNVLSWLLF---------VSDTDVLADAC 213 (450)
T ss_dssp TCHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHHHHHHTT---------CCCHHHHHHHH
T ss_pred CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHc---------cCCHHHHHHHH
Confidence 467777776642 134566677788888888764 333 3345889998888762 23468999999
Q ss_pred HHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 287 KLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 287 ~lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
..|+.++....... .-....++..|.+.+.++ .......|+..|..+.
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 262 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIV 262 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHh
Confidence 99999985321100 111223566677777643 4566777888888774
No 82
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=78.21 E-value=17 Score=36.28 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=82.1
Q ss_pred HHHHHHcCCCcHHHHHHH---HHHhhhcC--C-----ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCc
Q 009148 180 KITELAVSRSDSVLFKQA---LVSLATDS--G-----LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQ 249 (542)
Q Consensus 180 kIt~a~l~~~d~~~~~~A---L~sL~tD~--g-----L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~ 249 (542)
.+.+.+....+...+..| |..|..+. . +..++|.++..+.+ .+..........+..|..+..-.
T Consensus 153 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~~l~~~~~~~ 226 (450)
T 2jdq_A 153 PLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV------SDTDVLADACWALSYLSDGPNDK 226 (450)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC------CCHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc------CCHHHHHHHHHHHHHHHCCCcHH
Confidence 344444333344556544 44555432 2 35677777776632 34555666677777777654221
Q ss_pred cccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHhcCCCCCchhhhh
Q 009148 250 IEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYN-TLQTRLTKTLLNALLDPKRALTQHYG 327 (542)
Q Consensus 250 LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~-~L~~RI~~tL~k~llDp~ksl~t~YG 327 (542)
....+ ..++|.++.++- +..|.+|..|+..|+.|+........ -+...++..|.+.+.++ ....+.-
T Consensus 227 ~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~ 295 (450)
T 2jdq_A 227 IQAVIDAGVCRRLVELLM---------HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKE 295 (450)
T ss_dssp HHHHHHTTTHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHC---------CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHH
Confidence 21111 347777777652 34689999999999999864321111 11224667777777765 4566777
Q ss_pred HHHHHHhhC
Q 009148 328 AVQGLAALG 336 (542)
Q Consensus 328 AI~GL~aLG 336 (542)
|+..|..+.
T Consensus 296 a~~~L~~l~ 304 (450)
T 2jdq_A 296 ACWTISNIT 304 (450)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 888888875
No 83
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=77.69 E-value=27 Score=37.98 Aligned_cols=139 Identities=12% Similarity=0.131 Sum_probs=81.2
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHH---HhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccc
Q 009148 177 YFDKITELAVSRSDSVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPY 253 (542)
Q Consensus 177 Yf~kIt~a~l~~~d~~~~~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepY 253 (542)
|+..|... +.++|...++.||+ .|.+...+..+++.|..|+.+ .+...-..+.+.+..+..+= .+-
T Consensus 351 ~~~~i~~~-l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~------~d~e~r~~~v~~I~~la~k~----~~~ 419 (618)
T 1w63_A 351 HRSTIVDC-LKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDS------CEPEFKADCASGIFLAAEKY----APS 419 (618)
T ss_dssp GHHHHHHG-GGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHSS----CCC
T ss_pred HHHHHHHH-ccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHh----Ccc
Confidence 34444443 44556667777776 456666788899999998875 23344444555555555431 122
Q ss_pred hhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHH
Q 009148 254 LHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLA 333 (542)
Q Consensus 254 LHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~ 333 (542)
.+..++.++.++-.. +. ..++.+...+..|+++ ++.++..++..|.+.|.++...-...-.+++.|.
T Consensus 420 ~~~~v~~ll~lL~~~--~~-------~v~~~~~~~l~~ii~~----~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilG 486 (618)
T 1w63_A 420 KRWHIDTIMRVLTTA--GS-------YVRDDAVPNLIQLITN----SVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIG 486 (618)
T ss_dssp HHHHHHHHHHHHHHT--GG-------GSCSSHHHHHHHHHHH----SCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cc-------hhHHHHHHHHHHHHhc----ChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 344445555443221 11 1223344556667766 4678888888898888754332233346788888
Q ss_pred hhCHHH
Q 009148 334 ALGPNV 339 (542)
Q Consensus 334 aLG~~a 339 (542)
++|...
T Consensus 487 Ey~~~i 492 (618)
T 1w63_A 487 EYGDLL 492 (618)
T ss_dssp HHHHHH
T ss_pred hhHHHh
Confidence 887644
No 84
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=77.59 E-value=26 Score=40.39 Aligned_cols=125 Identities=10% Similarity=0.065 Sum_probs=70.5
Q ss_pred ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhc----CCCC--ccccchhhHHHHHHHHHhcccc----CCC---
Q 009148 207 LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQ----NPHI--QIEPYLHQLMPSVVTCLVAKRL----GNR--- 273 (542)
Q Consensus 207 L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~----Np~L--~LepYLHqLlPsvLTCll~k~l----~~~--- 273 (542)
..+.+..++.++-..... .+.......+.+...+.. .+.. ...+|+.+|++.++..+.-..- ...
T Consensus 338 ~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e 415 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGE 415 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSC
T ss_pred hHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCc
Confidence 444444455555443222 243333333344444433 3332 3456777777666655422110 000
Q ss_pred ------CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 274 ------LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 274 ------~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
..++.|.+|..++.+|..+|..++. .+-+-+...+.+.+.++..+....-+|+.++.++.
T Consensus 416 ~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia 481 (1049)
T 3m1i_C 416 IVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSIS 481 (1049)
T ss_dssp EEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTT
T ss_pred chHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHh
Confidence 1234689999999999999977653 34455556665555555567788889999999883
No 85
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.57 E-value=8.7 Score=38.15 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVE-Y---RIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVE-y---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++..++..|+ .++++++..|++... . .+.++++.|..++...++..+|.+||..|++.
T Consensus 268 l~~~~~~~~~-~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 268 LRIRCEEEDV-EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3444456677 499999999999887 2 56678888888888889999999999999986
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=77.49 E-value=28 Score=33.42 Aligned_cols=153 Identities=12% Similarity=0.055 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCcc--ccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHH
Q 009148 227 NNYSLLFALMRVVWNLLQNPHIQI--EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQ 304 (542)
Q Consensus 227 ~nl~~L~~lmrmv~ALl~Np~L~L--epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~ 304 (542)
.|.......+.++.+++.+-.... ..+....+..++..++.|.++. ..=.+|+.|..++-.++...+..
T Consensus 67 sN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~----~k~~~~~~a~~~l~~~~~~~~~~----- 137 (278)
T 4ffb_C 67 SNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS----SRATTKTQSMSCILSLCGLDTSI----- 137 (278)
T ss_dssp SSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC----CCHHHHHHHHHHHHHHHHTSSSS-----
T ss_pred chHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHhcCcH-----
Confidence 356677777888888887644432 3334556667777777775553 22378999988888887665432
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhHHHHHHh----hCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHH
Q 009148 305 TRLTKTLLNALLDPKRALTQHYGAVQGLAA----LGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGAL 380 (542)
Q Consensus 305 ~RI~~tL~k~llDp~ksl~t~YGAI~GL~a----LG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaL 380 (542)
..+...+...+. +++....-+++..|.. +|..++.. -|.++.+...+-+.+. .+|..+|..|..+.+.+
T Consensus 138 ~~~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~--k~~l~~i~~~l~k~l~---d~~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 138 TQSVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNV--QTFLPELLKHVPQLAG---HGDRNVRSQTMNLIVEI 210 (278)
T ss_dssp HHHHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCH--HHHHHHHGGGHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCc--hhHHHHHHHHHHHHHh---CCcHHHHHHHHHHHHHH
Confidence 234555555554 5666677776665543 46544321 1233344444444343 25677999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 009148 381 LQAAGQCIYDRLKIF 395 (542)
Q Consensus 381 l~a~g~~~~~~~~~~ 395 (542)
..-+|.-+....+.+
T Consensus 211 y~~~G~~~~~~~~~~ 225 (278)
T 4ffb_C 211 YKVTGNNSDLLEEIL 225 (278)
T ss_dssp HTC-----------C
T ss_pred HHHhCcchhhhhhhh
Confidence 998886554444444
No 87
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=77.25 E-value=7.9 Score=35.28 Aligned_cols=110 Identities=13% Similarity=0.056 Sum_probs=68.4
Q ss_pred cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhh-cCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 210 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLL-QNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 210 LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl-~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
.+|.++.++.+ .+.......+..+..|. .++...-...-+..+|.++.++- ++++.+|..|+.+
T Consensus 87 ~i~~l~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---------~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 87 GVEVLVKLLTS------TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---------STDSEVQKEAARA 151 (252)
T ss_dssp HHHHHHHHTTC------SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 45666655541 35666677778888888 44443222223456777777652 3458999999999
Q ss_pred HHHHHHHhCCC-chhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 289 VAAICKRYGHV-YNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 289 L~~I~~k~~~~-y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
|+.++...... ..-+...++..|.+.+.++ .......|+..|..+.
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIA 198 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 99998632111 1122334677777777643 3566777777777774
No 88
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.62 E-value=47 Score=31.18 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 009148 279 WELRDFTAKLVAAIC 293 (542)
Q Consensus 279 w~LRd~AA~lL~~I~ 293 (542)
+.+|..|+..|+.++
T Consensus 105 ~~vr~~a~~aL~~l~ 119 (280)
T 1oyz_A 105 ACVRATAIESTAQRC 119 (280)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344444444444443
No 89
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=74.89 E-value=23 Score=33.36 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhH
Q 009148 178 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 257 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqL 257 (542)
...+.+.+ ..++...|..|...|..-.. ...+|.++..+.+ .+...-......+..+ . ..-...
T Consensus 130 ~~~L~~~l-~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~d------~~~~vr~~a~~aL~~~-~-------~~~~~~ 193 (280)
T 1oyz_A 130 VEQSQITA-FDKSTNVRRATAFAISVIND-KATIPLLINLLKD------PNGDVRNWAAFAININ-K-------YDNSDI 193 (280)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHTC----CCHHHHHHHHTC------SSHHHHHHHHHHHHHH-T-------CCCHHH
T ss_pred HHHHHHHh-hCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcC------CCHHHHHHHHHHHHhh-c-------cCcHHH
Confidence 33444444 44556677777766664322 3466666655432 2222222222222222 1 112355
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 258 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 258 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
+|.++.++ .+.++.+|..|+..|+.+. .++.+..|.+.+.|+. ....|+.+|..+|.
T Consensus 194 ~~~L~~~l---------~d~~~~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d~~----vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 194 RDCFVEML---------QDKNEEVRIEAIIGLSYRK----------DKRVLSVLCDELKKNT----VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHT---------TCSCHHHHHHHHHHHHHTT----------CGGGHHHHHHHHTSSS----CCHHHHHHHHHHCC
T ss_pred HHHHHHHh---------cCCCHHHHHHHHHHHHHhC----------CHhhHHHHHHHhcCcc----HHHHHHHHHHhcCc
Confidence 66666554 2456899999999998875 1345666667777754 56788888888887
Q ss_pred H
Q 009148 338 N 338 (542)
Q Consensus 338 ~ 338 (542)
.
T Consensus 251 ~ 251 (280)
T 1oyz_A 251 K 251 (280)
T ss_dssp G
T ss_pred h
Confidence 4
No 90
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.24 E-value=49 Score=29.63 Aligned_cols=50 Identities=26% Similarity=0.312 Sum_probs=31.2
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
+.+|.+|..|+..|+.+.. +.....|.+.+.|+ .....+.|+.+|..+|.
T Consensus 123 d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 172 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 4567777777777777621 12344455555443 35677778888887765
No 91
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=73.89 E-value=10 Score=43.01 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 311 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 311 (542)
+..+-++.+.+-.|+ .|+..++|.++.++ . + .++..|+..+..+|+.++.....--+-|+..|
T Consensus 527 ~~~l~~~~~~l~~~~-----~~l~~vl~~l~~~l-~------~-----~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l 589 (971)
T 2x1g_F 527 LETMGSYCNWLMENP-----AYIPPAINLLVRGL-N------S-----SMSAQATLGLKELCRDCQLQLKPYADPLLNAC 589 (971)
T ss_dssp HHHHHHTHHHHC---------CHHHHHHHHHHHH-H------S-----SCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCH-----HHHHHHHHHHHHHh-C------h-----HHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445566776666665 68889999888887 2 1 46999999999999888754333445567777
Q ss_pred HHHhcCCC---CCchhhhhHHHHHH
Q 009148 312 LNALLDPK---RALTQHYGAVQGLA 333 (542)
Q Consensus 312 ~k~llDp~---ksl~t~YGAI~GL~ 333 (542)
.+.+..+. +.....|.||.-+.
T Consensus 590 ~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 590 HASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHH
Confidence 77776543 22444566655554
No 92
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=73.63 E-value=38 Score=37.02 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=57.0
Q ss_pred ccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHH
Q 009148 251 EPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQ 330 (542)
Q Consensus 251 epYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~ 330 (542)
..++..++|.|..|+.+. +.+..+|..|+-.+..+++.+....+. +.+...+.+.|.| +.....++|+.
T Consensus 141 ~e~~~~l~~~v~~~l~~~-------d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d--~d~~V~~~a~~ 209 (621)
T 2vgl_A 141 REMAEAFAGEIPKILVAG-------DTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLND--QHLGVVTAATS 209 (621)
T ss_dssp HHHHHHHTTHHHHHHHCS-------SSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTC--SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCC--CCccHHHHHHH
Confidence 346678889999997532 557899999999999999987554441 1555556566654 55688899999
Q ss_pred HHHhhCHHH
Q 009148 331 GLAALGPNV 339 (542)
Q Consensus 331 GL~aLG~~a 339 (542)
.|.++..+.
T Consensus 210 ~l~~i~~~~ 218 (621)
T 2vgl_A 210 LITTLAQKN 218 (621)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 888886543
No 93
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=73.20 E-value=5 Score=37.14 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=70.5
Q ss_pred cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 210 LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 210 LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
.+|.++.++.+ .+.......+..+..|..++.......+ ...+|.++.++- +.++.+|..|+..
T Consensus 97 ~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 161 (252)
T 4db8_A 97 ALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALWA 161 (252)
T ss_dssp HHHHHHHGGGC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---------CSCHHHHHHHHHH
T ss_pred CHHHHHHHHcC------CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---------CCCHHHHHHHHHH
Confidence 45666555432 3566677778888888888766533333 357888887761 3478999999999
Q ss_pred HHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 289 VAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 289 L~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
|+.++....... .-+...++..|.+.+.++ +.....-|+..|..|
T Consensus 162 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l 207 (252)
T 4db8_A 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNI 207 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHH
Confidence 999985321110 012233566777777765 566677778888877
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=73.10 E-value=3.1 Score=41.49 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 7 ETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 7 e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
+.|+.++++.|+ .++++++..|++-++.-++.+.++.-|++-.+..+++|.+||+..+-.
T Consensus 149 ~~l~~~~~~~g~-~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNL-ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTC-EECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 467799999999 599999999999999999999999999888766678999999988754
No 95
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=72.43 E-value=79 Score=31.28 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=88.0
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
..+|.|+..+... .+.......+..+..|+.|..-..+..+ +..+|.++.++- ..+..+|..|+.
T Consensus 124 g~l~~Ll~LL~~~-----~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~---------~~d~~v~~~A~~ 189 (296)
T 1xqr_A 124 GALRKLLRLLDRD-----ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ---------QQVQKLKVKSAF 189 (296)
T ss_dssp THHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH---------SSCHHHHHHHHH
T ss_pred CCHHHHHHHHccC-----CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHH
Confidence 4678888877642 1344555566777777766543333333 578888888762 235699999999
Q ss_pred HHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH---HhhCHHHHHHhhccChHHHHHhhhHhHhhhh
Q 009148 288 LVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGL---AALGPNVVRLLLLPNLGPYLSLLEPEMLLEK 363 (542)
Q Consensus 288 lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL---~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~ 363 (542)
+|+.++......- .-...-++..|.+.|.+++. ..+.=|+.+| ...++.+++.+--+. ..+...|+.....
T Consensus 190 aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~--~v~~~al~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~~~-- 264 (296)
T 1xqr_A 190 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHS--PFHEHVLGALCSLVTDFPQGVRECREPE-LGLEELLRHRCQL-- 264 (296)
T ss_dssp HHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCS--THHHHHHHHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHHHH--
T ss_pred HHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCCh--hHHHHHHHHHHHHHhCChhHHHHHhccH-HHHHHHHHHHHHH--
Confidence 9999998622111 12233466677777765533 3344444444 444667766544322 1233334332211
Q ss_pred hhhhhhhhh-HHHHHHHHHHHHHHHH
Q 009148 364 QKNEVKRHE-AWRVYGALLQAAGQCI 388 (542)
Q Consensus 364 ~~~~~~r~e-a~~v~gaLl~a~g~~~ 388 (542)
...+| .+.+|.....-+.+|+
T Consensus 265 ----lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 265 ----LQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp ----HTTCGGGHHHHHHHHHHHHHHC
T ss_pred ----ccchHHHHHHHHHHHHHHHHHc
Confidence 11133 4566666666655555
No 96
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.17 E-value=52 Score=29.46 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=72.1
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHH
Q 009148 179 DKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLM 258 (542)
Q Consensus 179 ~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLl 258 (542)
..+.+.+- ..+...|..|+..|..-.. ...+|.++..+.+ .+...-...++ +|-.-.. ...+
T Consensus 22 ~~L~~~L~-~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~------~~~~vr~~a~~---aL~~~~~-------~~~~ 83 (211)
T 3ltm_A 22 EMYIKNLQ-DDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD------EDAWVRRAAAD---ALGQIGD-------ERAV 83 (211)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC------SCHHHHHHHHH---HHHHHCC-------GGGH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC------CCHHHHHHHHH---HHHhhCC-------HHHH
Confidence 44555543 4556677777777765332 3556666655432 23333222333 3322111 2456
Q ss_pred HHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH
Q 009148 259 PSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 338 (542)
Q Consensus 259 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~ 338 (542)
|.++.++ .+.++.+|..|+..|+.+.. + .....|.+.+.| ........|+.+|..+|..
T Consensus 84 ~~L~~~l---------~~~~~~vr~~a~~aL~~~~~------~----~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 84 EPLIKAL---------KDEDGWVRQSAAVALGQIGD------E----RAVEPLIKALKD--EDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp HHHHHHT---------TCSSHHHHHHHHHHHHHHCC------G----GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHH---------cCCCHHHHHHHHHHHHHhCc------H----HHHHHHHHHHhC--CCHHHHHHHHHHHHHcCCH
Confidence 6666664 24578999999999998742 2 344556666654 4567889999999999864
No 97
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.75 E-value=7.9 Score=34.43 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=43.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
++..++..|+. ++++++..|++...-.++++++...+.+..+ +++|.+||+.|+.
T Consensus 170 l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 170 LLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 44555566884 9999999999888877888777777777666 6999999999985
No 98
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=71.71 E-value=3.3 Score=48.45 Aligned_cols=98 Identities=16% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCcc-HHHHHHHHHHHHHHHHHhCCCchhHHH
Q 009148 227 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNH-WELRDFTAKLVAAICKRYGHVYNTLQT 305 (542)
Q Consensus 227 ~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~h-w~LRd~AA~lL~~I~~k~~~~y~~L~~ 305 (542)
.++ .-..+|.+++.+.-.+.+.+..--. ..|+.+++.- -.|++ -++|+.||.+|+-+++-.+. .....
T Consensus 814 ~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~-----L~D~q~~EVRe~Aa~tLsgll~c~~~-~~~~~- 882 (997)
T 1vsy_5 814 SSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSN-----LYNEQFVEVRVRAASILSDIVHNWKE-EQPLL- 882 (997)
T ss_dssp CSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTT-----TTCSSCHHHHHHHHHHHHHHHHSCCS-HHHHH-
T ss_pred CcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHcCCc-hhhHH-
Confidence 356 6667788888888777776665433 3455554332 24778 89999999999999843211 12222
Q ss_pred HHHHHHHHHhcC---C-------CCCchhhhhHHHHHHhh
Q 009148 306 RLTKTLLNALLD---P-------KRALTQHYGAVQGLAAL 335 (542)
Q Consensus 306 RI~~tL~k~llD---p-------~ksl~t~YGAI~GL~aL 335 (542)
.++..|.+.+.. . .+......|||.||+|+
T Consensus 883 ~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~Al 922 (997)
T 1vsy_5 883 SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAI 922 (997)
T ss_dssp HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHH
Confidence 455555554432 0 12346889999999996
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=71.27 E-value=5.9 Score=36.17 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEY---RIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEy---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
-++..++..|+ .++++++..|++...- .+..+++.+..++...+ +++|.+||+.+++
T Consensus 182 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 182 ALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 34555666788 5999999999998774 44555666666665445 4699999999985
No 100
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.72 E-value=57 Score=28.92 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhH
Q 009148 178 FDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 257 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqL 257 (542)
...+.+.+ ..++...|..|+..|..-.. ...+|.++..+. . .+...-...++.+..+ .+ ...
T Consensus 47 ~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~----d--~~~~vr~~a~~aL~~~-~~---------~~~ 108 (201)
T 3ltj_A 47 VEPLIKAL-KDEDAWVRRAAADALGQIGD-ERAVEPLIKALK----D--EDGWVRQSAAVALGQI-GD---------ERA 108 (201)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTT----C--SSHHHHHHHHHHHHHH-CC---------GGG
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc----C--CCHHHHHHHHHHHHHh-Cc---------HHH
Confidence 34455555 34556677777776654321 234555554432 1 2333322233322222 11 235
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCH
Q 009148 258 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGP 337 (542)
Q Consensus 258 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~ 337 (542)
+|.++.++ .+.+|.+|..|+..|+.+.. +.....|.+.+.|+ +....+.|+.+|..+|.
T Consensus 109 ~~~L~~~l---------~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 109 VEPLIKAL---------KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHT---------TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHH---------cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc
Confidence 66666654 25679999999999998842 23455666777664 56789999999999986
Q ss_pred HH
Q 009148 338 NV 339 (542)
Q Consensus 338 ~a 339 (542)
..
T Consensus 168 ~~ 169 (201)
T 3ltj_A 168 ER 169 (201)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 101
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=70.31 E-value=33 Score=39.50 Aligned_cols=155 Identities=8% Similarity=-0.007 Sum_probs=93.7
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccc-cchhhHHHHHHHHHhccccCCC-
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE-PYLHQLMPSVVTCLVAKRLGNR- 273 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Le-pYLHqLlPsvLTCll~k~l~~~- 273 (542)
.+|..|..-.+ ..+++++..++.+.+...-.++......+.++.|+...=.-..+ .|+.++++.+++. +..
T Consensus 435 ~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l------~~~~ 507 (1049)
T 3m1i_C 435 EVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL------TVKK 507 (1049)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH------TTSS
T ss_pred HHHHHHHccCH-HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH------Hhhh
Confidence 45555543222 24566666666655543345677777777788888754211112 4566666666552 211
Q ss_pred -CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhh-------c
Q 009148 274 -LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLL-------L 345 (542)
Q Consensus 274 -~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~li-------l 345 (542)
..++|-.+|..+..++++.++-+.. .+..-+.++..+...+.|+ +...+--|..+|..|-.+.-..++ -
T Consensus 508 ~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~ 584 (1049)
T 3m1i_C 508 RGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1049)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Confidence 1235666676788889988765443 3556667888888888765 355556677777777665433322 2
Q ss_pred cChHHHHHhhhHhHh
Q 009148 346 PNLGPYLSLLEPEML 360 (542)
Q Consensus 346 P~L~~y~~~Le~~l~ 360 (542)
|+++.+...+...+.
T Consensus 585 p~~~~il~~l~~~~~ 599 (1049)
T 3m1i_C 585 PFIQTIIRDIQKTTA 599 (1049)
T ss_dssp CHHHHHHHTHHHHHT
T ss_pred cHHHHHHHHHHHHHH
Confidence 999999888876544
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=69.98 E-value=73 Score=37.34 Aligned_cols=174 Identities=19% Similarity=0.289 Sum_probs=107.4
Q ss_pred HHHHHhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCC--ccccchhhHHHHHHHHHhccccCCC
Q 009148 196 QALVSLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHI--QIEPYLHQLMPSVVTCLVAKRLGNR 273 (542)
Q Consensus 196 ~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L--~LepYLHqLlPsvLTCll~k~l~~~ 273 (542)
.++.++-...+....+|+ . +.+.+...+.+=..-..-|-.+.+|...... ..|||+-.++|.++.++-
T Consensus 36 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------- 105 (986)
T 2iw3_A 36 SEVASFLNGNIIEHDVPE--H-FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAG------- 105 (986)
T ss_dssp HHHHHHHTSSCSSSSCCH--H-HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTT-------
T ss_pred HHHHHHHhccccccccch--h-HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhc-------
Confidence 457776666666677775 3 3344554443321116778888899854433 779999999999998753
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH---HHHHh---hccC
Q 009148 274 LADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN---VVRLL---LLPN 347 (542)
Q Consensus 274 ~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~---aVr~l---ilP~ 347 (542)
|..=..|+-|..-+..|++.+... .+ ..++..|.+.+.+ ..-..+.-||+..|..|-.. .+... ++|-
T Consensus 106 --dk~~~v~~aa~~~~~~~~~~~~~~--a~-~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 106 --NKDKEIQSVASETLISIVNAVNPV--AI-KALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPV 179 (986)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHSCGG--GH-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHhCCHH--HH-HHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcc
Confidence 223379999999999999998742 23 6777777777743 33488999999998888543 33332 2333
Q ss_pred hHHHHHhhhHhHhhh------hhhhhhhhhhHHHHHHHHHHHHH
Q 009148 348 LGPYLSLLEPEMLLE------KQKNEVKRHEAWRVYGALLQAAG 385 (542)
Q Consensus 348 L~~y~~~Le~~l~~~------~~~~~~~r~ea~~v~gaLl~a~g 385 (542)
+...+....++.... +.-.-....|.+...-+|+.++.
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~ 223 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA 223 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc
Confidence 333333333333221 00112344566666667776654
No 103
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=69.75 E-value=33 Score=35.56 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=66.5
Q ss_pred cccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHH
Q 009148 208 HPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTA 286 (542)
Q Consensus 208 ~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA 286 (542)
..++|.++..+. -.+.......+..+..|..++.-.++..+ ..++|.++.++- +.++.+|..|+
T Consensus 243 ~~~l~~L~~lL~------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~---------~~~~~v~~~a~ 307 (528)
T 4b8j_A 243 RPALPALARLIH------SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL---------HPSPSVLIPAL 307 (528)
T ss_dssp TTHHHHHHHHTT------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT---------CSCHHHHHHHH
T ss_pred HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc---------CCChhHHHHHH
Confidence 345666665542 13566667777777777766543333322 246777777652 23579999999
Q ss_pred HHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 287 KLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 287 ~lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
.+|+.|+....... .-+...++..|.+.|.++. ......-|+..|..+
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNI 356 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHH
Confidence 99999985211100 1122335666777776542 445556666667666
No 104
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=67.75 E-value=12 Score=43.80 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=57.4
Q ss_pred CCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 3 IVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 3 ~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+|..-|.+..+..-..+++..|+-.||.-+||-..||++-|...++..|+++++..||..|++.
T Consensus 104 ~~pv~~~~~~l~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~ 168 (1049)
T 3ksy_A 104 SLPVEKIHPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCA 168 (1049)
T ss_dssp SSCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHH
T ss_pred cccHHHHHHHhhcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccC
Confidence 36777777776555556899999999999999999999999999999999999999999999965
No 105
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=67.12 E-value=5.9 Score=31.34 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 26 ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 26 a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
...||+..+ --|..++++|...+.+..+..++.+|+..|++.
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 455666555 468899999999999999999999999999975
No 106
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=66.20 E-value=24 Score=36.65 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc-hhHHH
Q 009148 227 NNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQT 305 (542)
Q Consensus 227 ~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~ 305 (542)
.+..........+..|..+..-.-......++|.++.++- +..+.+|..|+..|+.++....... .-+..
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---------~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 285 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---------SNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---------CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4567777788888888888533334456788888887751 3468999999999999984321110 11222
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 306 RLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 306 RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
.++..|.+.|.+++ .....-|+..|..+.
T Consensus 286 g~v~~Lv~lL~~~~--~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 286 GVCPRLVELLLHPS--PSVLIPALRTVGNIV 314 (528)
T ss_dssp TCHHHHHHHTTCSC--HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCC--hhHHHHHHHHHHHHH
Confidence 35667777777653 455666777777763
No 107
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=65.71 E-value=15 Score=36.73 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=49.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVE---YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNVE 71 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVE---yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nvE 71 (542)
-++..++..|++ ++++++..||...+ -.+..+++.+..++.-.++.++|.+++..|+...+++
T Consensus 188 iL~~~~~~~~~~-~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~ 253 (334)
T 1in4_A 188 IIKRAASLMDVE-IEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNID 253 (334)
T ss_dssp HHHHHHHHTTCC-BCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC-cCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 456677778885 99999999988543 2355677778888887788899999999999987653
No 108
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=62.70 E-value=7.9 Score=31.06 Aligned_cols=34 Identities=29% Similarity=0.252 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 35 YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 35 yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
--|..++++|...+.+..+..++.+|+..|++..
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 3577889999999999899999999999999864
No 109
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=61.71 E-value=1.8e+02 Score=31.51 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=87.9
Q ss_pred cccCcccccccHHHHHHHHHHHHHHcCCCcHHHHH---HHH---HHhhhcCCccccchhHHHHHHHHhh--c--cCCCHH
Q 009148 161 EIKLPVKHILSRELQLYFDKITELAVSRSDSVLFK---QAL---VSLATDSGLHPLVPYFTYFVADEVS--R--GLNNYS 230 (542)
Q Consensus 161 ~iK~~vkh~LSkElQ~Yf~kIt~a~l~~~d~~~~~---~AL---~sL~tD~gL~qLLPYfv~FI~e~V~--~--nl~nl~ 230 (542)
.+++..+.++++|.+.|+...+.-++..-...-+. ..| ....|-+|.++|+.++ .++.. . +..|..
T Consensus 161 kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii----~eQa~L~~~f~~sD~e 236 (507)
T 3u0r_A 161 KLKTLPDEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELV----AEQADLEQTFNPSDPD 236 (507)
T ss_dssp HGGGSCTTTSCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHH----HHHHTTTSCCCSSCHH
T ss_pred HHhhcchhhccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHH----HHHHhccCCCCCcCHH
Confidence 34566678899999999887666665432222333 222 3445566667665544 44432 2 224655
Q ss_pred HHHHHHHHHH-Hh-hcCCCC----ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc--hh
Q 009148 231 LLFALMRVVW-NL-LQNPHI----QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY--NT 302 (542)
Q Consensus 231 ~L~~lmrmv~-AL-l~Np~L----~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y--~~ 302 (542)
.+.+++..++ || +-.+.. +++.|..+++| .-..+...-..+.|.||- =++++.++.-+|..- ..
T Consensus 237 ~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP------~l~~L~e~~~~~~~kL~L--LK~lAE~s~~~~~~e~a~~ 308 (507)
T 3u0r_A 237 CVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLP------NLGTLTTPVEGLDIQLEV--LKLLAEMSSFCGDMEKLET 308 (507)
T ss_dssp HHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGG------GTTCCCCC--CCCHHHHH--HHHHHHHHTTCCCCTTHHH
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhcc------chhhccccccchHHHHHH--HHHHHHHccCCCccchHHH
Confidence 5555443322 22 222223 45555566666 111222211122377754 366777887777333 33
Q ss_pred HHHHHHHHHHHHhcCCC---------------CCchhhhhHHHHHHhhCHHHHHHh
Q 009148 303 LQTRLTKTLLNALLDPK---------------RALTQHYGAVQGLAALGPNVVRLL 343 (542)
Q Consensus 303 L~~RI~~tL~k~llDp~---------------ksl~t~YGAI~GL~aLG~~aVr~l 343 (542)
+-+-|..+|++.+=-|. -.++-.---+..++.||.++-..+
T Consensus 309 ~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~l 364 (507)
T 3u0r_A 309 NLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDFL 364 (507)
T ss_dssp HHHHHHHHHHTTSCCCC--------------CCCHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhhh
Confidence 55666666665542111 123333345556777777665554
No 110
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=58.76 E-value=14 Score=33.07 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=40.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
++..++..|+ .++++++..|++...-..+.+.+.+.+.+..++ +++|.+||+.|+.
T Consensus 194 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~-~~i~~~~v~~~~~ 249 (250)
T 1njg_A 194 LEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASGD-GQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHTTC-CBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT-SSBCHHHHHHHSC
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC-ceecHHHHHHHhC
Confidence 3444456677 589999999998887666666665555555544 5899999998863
No 111
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=57.13 E-value=21 Score=31.86 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=63.4
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAK 287 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~ 287 (542)
..+|.++.++.+ .+..........+..|..+..-..+..+ +..+|.++.++- +.+..+|..|+.
T Consensus 96 g~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~---------~~~~~v~~~a~~ 160 (210)
T 4db6_A 96 GALPALVQLLSS------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---------SPNEQILQEALW 160 (210)
T ss_dssp TCHHHHHHHTTC------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHH
T ss_pred CCHHHHHHHHcC------CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHc---------CCCHHHHHHHHH
Confidence 366777766632 2445555666667777654322222222 457888887752 235689999999
Q ss_pred HHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 288 LVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 288 lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
.|..+|......- .-....++..|.+.+.+ .+.....-|...|..|.
T Consensus 161 aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 161 ALSNIASGGNEQKQAVKEAGALEKLEQLQSH--ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHh
Confidence 9999986321100 11122345566666654 34455666666666553
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=55.95 E-value=14 Score=30.22 Aligned_cols=44 Identities=18% Similarity=0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 26 ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 26 a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
...||+..+ .-|+.++++|...+-+..+..++.+|+..|++..-
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHh
Confidence 345666544 46899999999999999999999999999998643
No 113
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=55.75 E-value=61 Score=37.89 Aligned_cols=89 Identities=10% Similarity=0.112 Sum_probs=55.5
Q ss_pred HHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchh--------HHHH
Q 009148 235 LMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNT--------LQTR 306 (542)
Q Consensus 235 lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~--------L~~R 306 (542)
+-|..+=+-.|| ++++++|..++..- .++|-.+.+.|+..+..||.+|+....+ --.-
T Consensus 524 lGry~~wl~~~~---------~~L~~vl~~L~~~l-----~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~ 589 (1023)
T 4hat_C 524 VGQYPRFLKAHW---------NFLRTVILKLFEFM-----HETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQT 589 (1023)
T ss_dssp HHTCHHHHHHCH---------HHHHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHH
T ss_pred HHHHHHHHhccH---------HHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHH
Confidence 445555554443 34566666655542 2446689999999999999998754321 2345
Q ss_pred HHHHHHHHhcC-CCCCchhhhhHHHHHHh-hCH
Q 009148 307 LTKTLLNALLD-PKRALTQHYGAVQGLAA-LGP 337 (542)
Q Consensus 307 I~~tL~k~llD-p~ksl~t~YGAI~GL~a-LG~ 337 (542)
|...+.+++.+ +.+.....|.||..+.. ++.
T Consensus 590 il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 66777777642 23445677877776665 353
No 114
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=55.24 E-value=12 Score=30.51 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 35 YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 35 yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.-|..++++|...+.+..+..++.+|+..|++.
T Consensus 48 ADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 48 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 467889999999998888899999999999975
No 115
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=54.16 E-value=1.2e+02 Score=35.24 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=57.2
Q ss_pred ccchhHHHHHHHHhhccCC---CHH----HHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHH
Q 009148 209 PLVPYFTYFVADEVSRGLN---NYS----LLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWEL 281 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~---nl~----~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~L 281 (542)
.-+|+++.++..-+..++. +.. .+..+-|...=+..+| +.+|++|..++..+. . .+.+-.+
T Consensus 486 ~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~---------~~l~~~L~~ll~~~g-l--~~~~~~V 553 (980)
T 3ibv_A 486 KSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES---------AAIPALIEYFVGPRG-I--HNTNERV 553 (980)
T ss_dssp CCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC---------TTHHHHHHHHTSTTT-T--TCCCTTT
T ss_pred chhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc---------hhHHHHHHHHhcccc-c--cCCChhH
Confidence 4566666666655443331 111 1222344444444443 456778877766321 1 1234478
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Q 009148 282 RDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALL 316 (542)
Q Consensus 282 Rd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~ll 316 (542)
|..|+.++.++|+.+...-..--..|+..+...|.
T Consensus 554 ~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 554 RPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999987654444557777766554
No 116
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=52.50 E-value=9.6 Score=30.39 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 35 YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 35 yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
--|..++++|...+.+..+..++.+|+..|++..
T Consensus 38 ADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 38 ADINSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 4678899999999998888999999999999864
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.97 E-value=50 Score=32.30 Aligned_cols=64 Identities=13% Similarity=0.054 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHc-----CCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 5 PKETVEVIAQSI-----GISNFSTDAALALAPDVE------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 5 p~e~Ik~iAes~-----Gi~~Lsdeaa~~La~dVE------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
+.+.+..+.+.. +-..+++++++.+++... .++.++++.|..++...++.+++.+||..|+...
T Consensus 202 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 345555554432 223689999999999888 5677889999988888888999999999999765
No 118
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=49.70 E-value=46 Score=34.68 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=45.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDV-EY---RIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dV-Ey---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++..++..|+ .++++++..++... +- +...+++.|.-++...+|.++|.+||..|+..
T Consensus 375 L~~~~~~~~~-~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 375 IKIRAQTEGI-NISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHTC-CBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 3444455677 49999999998876 42 46667778888888889999999999999987
No 119
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=47.64 E-value=1.7e+02 Score=31.84 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCCCcHHHHHHHHH---HhhhcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccc
Q 009148 175 QLYFDKITELAVSRSDSVLFKQALV---SLATDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIE 251 (542)
Q Consensus 175 Q~Yf~kIt~a~l~~~d~~~~~~AL~---sL~tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~Le 251 (542)
+.|...+...+-..+|...+..||+ .|.+...+..++..+..|+.+. +...-..+++-+..+..+=.=..+
T Consensus 367 ~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~------d~~~~~~~v~~I~~la~k~~~~~~ 440 (621)
T 2vgl_A 367 KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA------DYSIREEIVLKVAILAEKYAVDYT 440 (621)
T ss_dssp HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHhc------CHHHHHHHHHHHHHHHHhcCCcHH
Confidence 3444444443331555556666665 4556666888888888888641 222222233333333221111235
Q ss_pred cchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHH
Q 009148 252 PYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQG 331 (542)
Q Consensus 252 pYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~G 331 (542)
-|+.-|+. ++..- |.. ..+.+...+..|+.+ .+.++..+...|...+.||...-.-...|++.
T Consensus 441 ~~v~~Ll~-ll~~~-----~~~-------v~~ev~~~l~~ii~~----~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wi 503 (621)
T 2vgl_A 441 WYVDTILN-LIRIA-----GDY-------VSEEVWYRVIQIVIN----RDDVQGYAAKTVFEALQAPACHENLVKVGGYI 503 (621)
T ss_dssp HHHHHHHH-HHHHH-----GGG-------SCSHHHHHHHHHHGG----GCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhh-----ccc-------chHHHHHHHHHHHhC----ChhHHHHHHHHHHHHHcCccchHHHHHHHHHH
Confidence 55554443 22221 111 112233344444443 36788889999999999887665555677799
Q ss_pred HHhhCHHHHHHhhccCh--HHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 009148 332 LAALGPNVVRLLLLPNL--GPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALLQAAGQCI 388 (542)
Q Consensus 332 L~aLG~~aVr~lilP~L--~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl~a~g~~~ 388 (542)
|.+.|...-.. |.+ ..+++.+.+... .+-..|...++.|+..+.
T Consensus 504 lGEy~~~~~~~---~~~~p~~~l~~l~~~~~----------~~~~~v~~~~Lta~~Kl~ 549 (621)
T 2vgl_A 504 LGEFGNLIAGD---PRSSPLIQFNLLHSKFH----------LCSVPTRALLLSTYIKFV 549 (621)
T ss_dssp HHHHTHHHHSS---TTSCHHHHHHHHHHHHT----------TSCHHHHHHHHHHHHHHH
T ss_pred hcchHHHhccc---CCCCHHHHHHHHHHHhc----------cCCHHHHHHHHHHHHHHH
Confidence 99998765442 111 123333332221 123456677777777654
No 120
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=47.04 E-value=1.2e+02 Score=32.86 Aligned_cols=71 Identities=15% Similarity=0.053 Sum_probs=52.6
Q ss_pred chhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Q 009148 253 YLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGL 332 (542)
Q Consensus 253 YLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL 332 (542)
.+..++|.+..|+- +.+..+|..|+..+..|++.+. .+-.++...+.+.+.| +.....++|+..|
T Consensus 139 ~~~~l~~~l~~~L~---------~~~~~VRk~A~~al~~l~~~~p----~~v~~~~~~l~~lL~D--~d~~V~~~Al~~L 203 (618)
T 1w63_A 139 MCRDLAGEVEKLLK---------TSNSYLRKKAALCAVHVIRKVP----ELMEMFLPATKNLLNE--KNHGVLHTSVVLL 203 (618)
T ss_dssp HHHHHHHHHHHHHH---------SCCHHHHHHHHHHHHHHHHHCG----GGGGGGGGGTTTSTTC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHHCh----HHHHHHHHHHHHHhCC--CCHhHHHHHHHHH
Confidence 45567888888873 2457999999999999999864 3444555555555554 5678899999999
Q ss_pred HhhCHH
Q 009148 333 AALGPN 338 (542)
Q Consensus 333 ~aLG~~ 338 (542)
..++..
T Consensus 204 ~~i~~~ 209 (618)
T 1w63_A 204 TEMCER 209 (618)
T ss_dssp HHHCCS
T ss_pred HHHHHh
Confidence 999753
No 121
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=46.58 E-value=97 Score=33.27 Aligned_cols=116 Identities=9% Similarity=0.054 Sum_probs=70.0
Q ss_pred CcHHHHHH---HHHHhhhcCC-------ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHH
Q 009148 189 SDSVLFKQ---ALVSLATDSG-------LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLM 258 (542)
Q Consensus 189 ~d~~~~~~---AL~sL~tD~g-------L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLl 258 (542)
++...+.. +|..|..+.. ....+|.++..+.+. .+........+.+..|..++......+-...+
T Consensus 26 ~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i 100 (644)
T 2z6h_A 26 EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGI 100 (644)
T ss_dssp SCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHH
T ss_pred CCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCH
Confidence 34445543 4455656553 124566666666421 35555566666777777775533333334578
Q ss_pred HHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009148 259 PSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDP 318 (542)
Q Consensus 259 PsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~llDp 318 (542)
|.++.++- ..+..+|..|+..|..|+......-..+ +..++..|.+.|.++
T Consensus 101 ~~Lv~lL~---------~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 152 (644)
T 2z6h_A 101 PALVKMLG---------SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 152 (644)
T ss_dssp HHHHHHTT---------CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHh---------CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC
Confidence 88877752 1246899999999999998764322222 345677788888765
No 122
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=44.19 E-value=51 Score=35.83 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 18 ISNFSTDAALALAPDVE-------------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 18 i~~Lsdeaa~~La~dVE-------------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
...+++++...|.+.-. -.+..+++.|..+++..+|..++.+||..|++.
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 45799999999987552 346678999999999999999999999999964
No 123
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=42.43 E-value=17 Score=35.60 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=38.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----ccCHHHHHHHHH
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRT----TLTTDDVDEALK 66 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~----~Lt~~DI~~AL~ 66 (542)
++.+++.-|+ .++++++..|++...-.+|++++..-+....++|. .+|.+||..++.
T Consensus 201 l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 201 LRFISEQENV-KCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 3444455677 49999999999887766666555544444333332 899999998875
No 124
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=41.87 E-value=89 Score=30.30 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 17 GISNFSTDAALALAPDVEY-------RIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 17 Gi~~Lsdeaa~~La~dVEy-------rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
++ .+++++...|++.... .+..+++.|..++.-.+|.+++.+||..|+..
T Consensus 265 ~~-~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KV-EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GC-BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 55 6999999999887764 35567777788888889999999999999976
No 125
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=41.75 E-value=78 Score=35.37 Aligned_cols=117 Identities=11% Similarity=0.048 Sum_probs=67.4
Q ss_pred CCcHHHHHHHHHH---hhhcCC-------ccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhH
Q 009148 188 RSDSVLFKQALVS---LATDSG-------LHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQL 257 (542)
Q Consensus 188 ~~d~~~~~~AL~s---L~tD~g-------L~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqL 257 (542)
.++...+..|+.. |..+.. ....+|.++.++... .+........+.+..|..++.-.-.-.-...
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~-----~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~ 235 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT-----NDVETARCTSGTLHNLSHHREGLLAIFKSGG 235 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence 3455566655544 433321 224677777666532 2455555566666666665432111112346
Q ss_pred HHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009148 258 MPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTL-QTRLTKTLLNALLDP 318 (542)
Q Consensus 258 lPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L-~~RI~~tL~k~llDp 318 (542)
+|.++.++- ..+-.+|..|+.+|..||..+...-..+ ...++..|.+.+.++
T Consensus 236 I~~Lv~lL~---------~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 236 IPALVNMLG---------SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHTT---------CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHc---------CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 777777652 1246899999999999998765432222 244666788887754
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.61 E-value=1.2e+02 Score=29.42 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 19 SNFSTDAALALAPDVE------YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 19 ~~Lsdeaa~~La~dVE------yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
..+++++...+++... ..+.++++.|...+...++.+++.+||..|+...
T Consensus 217 ~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 217 GVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp SCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 4689999999998876 3466788888888887788899999999998764
No 127
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=41.59 E-value=29 Score=38.91 Aligned_cols=98 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCC-CchhHHHH
Q 009148 228 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-VYNTLQTR 306 (542)
Q Consensus 228 nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~-~y~~L~~R 306 (542)
+.......+..+..|..+..-. .-...++|.++..+ ...+|.+|..|+.+|+.|+..... ...-++..
T Consensus 373 ~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL---------~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g 441 (780)
T 2z6g_A 373 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLL---------GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 441 (780)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHT---------TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHH---------cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC
Confidence 3445555666667777665322 12356788777764 135789999999999999753110 00001112
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 307 LTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 307 I~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
.+..|.+.+.++..+-...+-|+..|..|.
T Consensus 442 ~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 442 GIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 344555555543333356666777776664
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.28 E-value=23 Score=33.75 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=34.7
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 26 ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 26 a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
...|+...+ ..++.++++|...+...++..++.+|+..|++.
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 444555444 378899999999999999999999999999985
No 129
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=40.89 E-value=1.3e+02 Score=30.59 Aligned_cols=96 Identities=8% Similarity=0.012 Sum_probs=59.2
Q ss_pred ccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHH
Q 009148 209 PLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKL 288 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~l 288 (542)
..+|.++..+... .+........+.+..|..++...-...-...+|.++.++- +++..+|..|+..
T Consensus 59 ~~i~~Lv~~L~~~-----~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~---------~~~~~v~~~a~~~ 124 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-----NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG---------SPVDSVLFYAITT 124 (529)
T ss_dssp HHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHH
T ss_pred chHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc---------CCCHHHHHHHHHH
Confidence 3567777666432 3555556666777777666542111222357787777752 1236899999999
Q ss_pred HHHHHHHhCCCchhH-HHHHHHHHHHHhcCC
Q 009148 289 VAAICKRYGHVYNTL-QTRLTKTLLNALLDP 318 (542)
Q Consensus 289 L~~I~~k~~~~y~~L-~~RI~~tL~k~llDp 318 (542)
|..+|......-..+ +..++..|.+.+.++
T Consensus 125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~ 155 (529)
T 1jdh_A 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 155 (529)
T ss_dssp HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC
T ss_pred HHHHhcCCcchHHHHHHcCCHHHHHHHHhcC
Confidence 999998754322222 355677788888764
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=40.49 E-value=15 Score=34.33 Aligned_cols=59 Identities=20% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCCCCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTD-AALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsde-aa~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
-++..++..++. .+++ ....|+...+ ..|+.++++|...+...++..++.+|+..|++.
T Consensus 185 il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 185 IFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 455667788885 4544 3466766443 378899999999988888899999999999975
No 131
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=37.94 E-value=3e+02 Score=26.91 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhc-CCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHH
Q 009148 230 SLLFALMRVVWNLLQ-NPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLT 308 (542)
Q Consensus 230 ~~L~~lmrmv~ALl~-Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~ 308 (542)
..+..|-++-+=+++ ||. ++.++++.++... . +..-++|.+-+.++..+|++ .+.+-++++
T Consensus 31 ~kl~~L~qa~el~~~~dp~-----ll~~~l~~il~~~------~---~~~~~vrk~~~~Fi~e~~~~----k~~l~~~~l 92 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAE-----LAEEFLESVLSLA------H---DSNMEVRKQVVAFVEQVCKV----KVELLPHVI 92 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGG-----GHHHHHHHHHGGG------G---CSCHHHHHHHHHHHHHHHHH----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHccCHh-----HHHHHHHHHHHhc------c---CChHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 445555554442333 343 4455555555432 1 23579999999999999977 478999999
Q ss_pred HHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhc-cC----hHHHHHhhhHhHh---hh-hhhhhhhhhhHHHHHHH
Q 009148 309 KTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLL-PN----LGPYLSLLEPEML---LE-KQKNEVKRHEAWRVYGA 379 (542)
Q Consensus 309 ~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lil-P~----L~~y~~~Le~~l~---~~-~~~~~~~r~ea~~v~ga 379 (542)
.+|...+.| ......=.+|.+...+=+.+.+.++- |+ ....|+.+..-.. .- ...|.-.|..+.|+...
T Consensus 93 ~~L~~Ll~d--~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~ 170 (257)
T 3gs3_A 93 NVVSMLLRD--NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEG 170 (257)
T ss_dssp HHHHHHTTC--SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 999888875 44566668888888887777777553 33 3566665432111 10 11233455555555544
Q ss_pred HHH
Q 009148 380 LLQ 382 (542)
Q Consensus 380 Ll~ 382 (542)
++-
T Consensus 171 vIl 173 (257)
T 3gs3_A 171 VVV 173 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 132
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=37.61 E-value=21 Score=30.09 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=39.3
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHH
Q 009148 276 DNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPN 338 (542)
Q Consensus 276 ~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~ 338 (542)
+.+|.+|..|+..|+.+.. ++.+..|.+.+.| ......+.|+.+|..+|..
T Consensus 53 d~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 53 NEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp CSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHHCSH
T ss_pred CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCcH
Confidence 4679999999999988752 3456667777765 4567889999999999853
No 133
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=34.99 E-value=56 Score=27.47 Aligned_cols=61 Identities=11% Similarity=0.188 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CccCHHHHHHHH
Q 009148 4 VPKETVEVIAQSIGI----SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRR-------TTLTTDDVDEAL 65 (542)
Q Consensus 4 ~p~e~Ik~iAes~Gi----~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR-------~~Lt~~DI~~AL 65 (542)
+|+++|-+|.. ..+ ++++.|+...+++.++-.+||.+-.|..--+...- ..|+.+|.+.-.
T Consensus 2 ip~~llaRIL~-~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILS-QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHT-TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 78888888887 444 46999999999999999999999888654444222 378888887643
No 134
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=34.58 E-value=45 Score=32.72 Aligned_cols=57 Identities=19% Similarity=0.185 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.++.+++..|+ .++++++..|++...-.++.+.+..-+....+ ..++|.+||+.++.
T Consensus 186 ~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 186 QLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQVSTQAVSAMLG 242 (373)
T ss_dssp HHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCBCHHHHHHHTT
T ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcccHHHHHHHhC
Confidence 34555567788 49999999999887766676666665555544 46799999988763
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.44 E-value=87 Score=30.75 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHc---CC--CCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 4 VPKETVEVIAQSI---GI--SNFSTDAALALAPDVE---Y---RIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 4 ~p~e~Ik~iAes~---Gi--~~Lsdeaa~~La~dVE---y---rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
++.+.+..+.+.. |. ..+++++++.+++... - ++.++++.|..++. ++.+++.+||..|+...
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 3455566665543 33 3689999999998887 2 35577778777766 56789999999999865
No 136
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=32.96 E-value=1.8e+02 Score=33.58 Aligned_cols=144 Identities=8% Similarity=0.088 Sum_probs=86.9
Q ss_pred ccchhHHHHHHHHhhccC-----CCHHHHHHHHHHHHHh---hcCCCCc---cccchhhHHHHHHHHHhccccCCCCCCc
Q 009148 209 PLVPYFTYFVADEVSRGL-----NNYSLLFALMRVVWNL---LQNPHIQ---IEPYLHQLMPSVVTCLVAKRLGNRLADN 277 (542)
Q Consensus 209 qLLPYfv~FI~e~V~~nl-----~nl~~L~~lmrmv~AL---l~Np~L~---LepYLHqLlPsvLTCll~k~l~~~~~~~ 277 (542)
..+++...+|..-+...+ .++..+...+..+.++ +.|.... ..+++.+|++.+..++-+ .+ +.+.
T Consensus 432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s-~i---~~~~ 507 (980)
T 3ibv_A 432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS-QV---CRHP 507 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS-ST---TTCC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC-CC---CCCC
Confidence 344533334544443332 2355555555555554 3332222 335666777555544332 22 3467
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH--HhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhh
Q 009148 278 HWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLN--ALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLL 355 (542)
Q Consensus 278 hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k--~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~L 355 (542)
|-.+|.-+-.++++-++=+.. .+..-+.++..++. .+.|+++... .-|...|..|-.+ .+..+.|++..++..+
T Consensus 508 hp~V~~~~~~~l~rys~~~~~-~~~~l~~~L~~ll~~~gl~~~~~~V~--~~a~~af~~f~~~-~~~~L~~~~~~il~~l 583 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDY-ESAAIPALIEYFVGPRGIHNTNERVR--PRAWYLFYRFVKS-IKKQVVNYTESSLAML 583 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGT-CCTTHHHHHHHHTSTTTTTCCCTTTH--HHHHHHHHHHHHH-TTTTCSSSHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CchhHHHHHHHHhccccccCCChhHH--HHHHHHHHHHHHH-hhHHhhhHHHHHHHHH
Confidence 999999999999998877764 35666677777777 6666665444 3345555555544 3445789999999999
Q ss_pred hHhHh
Q 009148 356 EPEML 360 (542)
Q Consensus 356 e~~l~ 360 (542)
++.+.
T Consensus 584 ~~lL~ 588 (980)
T 3ibv_A 584 GDLLN 588 (980)
T ss_dssp TGGGC
T ss_pred HHhhc
Confidence 88665
No 137
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=32.75 E-value=1.5e+02 Score=28.68 Aligned_cols=48 Identities=13% Similarity=-0.013 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 20 NFSTDAALALAPDVEY-----------------------RIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 20 ~Lsdeaa~~La~dVEy-----------------------rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
.+++++...+++-+.. .+..+++.|..++.-.+|..++.+||..|++.
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4899999888875531 23456777777888889999999999999975
No 138
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.65 E-value=50 Score=35.16 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=34.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 26 ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 26 a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
...||+..+ .-|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 344555443 468899999999999999999999999999874
No 139
>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C
Probab=31.27 E-value=86 Score=26.39 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIRE 39 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre 39 (542)
|+.+..+.|+.+|+-.-+. ++++-...++.+++..+.-
T Consensus 1 Mm~i~~e~v~~iA~LArL~-l~eeE~~~~~~~l~~Il~~ 38 (100)
T 3ip4_C 1 MTKVTREEVEHIANLARLQ-ISPEETEEMANTLESILDF 38 (100)
T ss_dssp --CCCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHHHHH
Confidence 6679999999999999994 9999888888777655543
No 140
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=31.24 E-value=75 Score=28.11 Aligned_cols=47 Identities=13% Similarity=0.103 Sum_probs=40.0
Q ss_pred HHHHHHHHcCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009148 8 TVEVIAQSIGI----SNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRT 54 (542)
Q Consensus 8 ~Ik~iAes~Gi----~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~ 54 (542)
-|+.|++...- -+...+|..+|-+-.|..|-.+.+++--++.|++|.
T Consensus 10 LVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~g 60 (121)
T 2ly8_A 10 LVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPR 60 (121)
T ss_dssp HHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCcc
Confidence 36677776532 378999999999999999999999999999999774
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.62 E-value=96 Score=29.48 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=41.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
.++.+++..|+. ++++++..|++...-.++.+++..-+..... +.+|.+||..++.
T Consensus 174 ~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 174 RLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 344555567884 9999999999988877777666665555433 4799999988874
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=30.10 E-value=1.3e+02 Score=29.49 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 20 NFSTDAALALAPDV---------E---YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 20 ~Lsdeaa~~La~dV---------E---yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
.++++++..+++.. . .++.++++.|...+...++.+++.+||..|+...
T Consensus 214 ~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 214 SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 68999999999988 3 4577888888888888888999999999998764
No 143
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=30.04 E-value=3.9e+02 Score=25.93 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhH
Q 009148 280 ELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEM 359 (542)
Q Consensus 280 ~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l 359 (542)
..|---+..|..|.+- ||.+-+-|.+-+...+.+|+ -.-..-|+.=+.++|..-.|- +.|+|+.+..+|..
T Consensus 122 kikIn~~yaLeeIara----nP~l~~~v~rdi~smltskd--~~Dkl~aLnFi~alGen~~~y-v~PfLprL~aLL~D-- 192 (253)
T 2db0_A 122 KTKINVSYALEEIAKA----NPMLMASIVRDFMSMLSSKN--REDKLTALNFIEAMGENSFKY-VNPFLPRIINLLHD-- 192 (253)
T ss_dssp HHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHTSCSS--HHHHHHHHHHHHTCCTTTHHH-HGGGHHHHHGGGGC--
T ss_pred cceecHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHhccCccc-cCcchHHHHHHHcC--
Confidence 6677777777777775 58999999999999988555 556677888889999888876 78999999886542
Q ss_pred hhhhhhhhhhhhhHHHHHHHHH---HHHHHHHHHhhhcCC
Q 009148 360 LLEKQKNEVKRHEAWRVYGALL---QAAGQCIYDRLKIFP 396 (542)
Q Consensus 360 ~~~~~~~~~~r~ea~~v~gaLl---~a~g~~~~~~~~~~~ 396 (542)
.|+++|..|..-.+-|- .++-..+.++++.|-
T Consensus 193 -----~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~ 227 (253)
T 2db0_A 193 -----GDEIVRASAVEALVHLATLNDKLRKVVIKRLEELN 227 (253)
T ss_dssp -----SSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCC
T ss_pred -----cchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhc
Confidence 45666655543333221 234455666666663
No 144
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=29.24 E-value=55 Score=31.12 Aligned_cols=55 Identities=13% Similarity=0.090 Sum_probs=41.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
.++.+++..|+. ++++++..|++...-.++++++..-+.... ...+|.+||..++
T Consensus 169 ~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~ 223 (319)
T 2chq_A 169 RLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQIT 223 (319)
T ss_dssp HHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHT
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Confidence 455566777884 999999999988777777777766665543 3579999998775
No 145
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=28.46 E-value=6.7e+02 Score=29.46 Aligned_cols=136 Identities=11% Similarity=0.058 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Q 009148 232 LFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTL 311 (542)
Q Consensus 232 L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL 311 (542)
+..+++.+.....++++. ..++|.++..+++- ++ +|=.+|..+-.+++..+.-++ ..+.+-+.++..+
T Consensus 510 leav~~~~~~~~e~~~l~-----~~~~~~Ll~~ll~~----~~--~~p~l~~~~i~~l~~l~~~~~-~~p~~L~~vL~~l 577 (1204)
T 3a6p_A 510 LESVITQMFRTLNREEIP-----VNDGIELLQMVLNF----DT--KDPLILSCVLTNVSALFPFVT-YRPEFLPQVFSKL 577 (1204)
T ss_dssp HHHHHHHHHHHSCTTCCC-----HHHHHHHHHHHHHC----CC--SCHHHHHHHHHHHHHHGGGGG-TCGGGHHHHHHHH
T ss_pred HHHHHHHHhccccccccc-----HHHHHHHHHHHHhC----CC--CChHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHH
Confidence 444455554444454431 14566666655442 11 244699999999988887665 4578888999988
Q ss_pred HHHhcCCCC----------CchhhhhHHHHHHhhCHHHHHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHHHH
Q 009148 312 LNALLDPKR----------ALTQHYGAVQGLAALGPNVVRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGALL 381 (542)
Q Consensus 312 ~k~llDp~k----------sl~t~YGAI~GL~aLG~~aVr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~gaLl 381 (542)
.+.+.++.. .-..+.=|-..|..|..+. ...++|++..+...++..+..+. .....|-..++.+|+
T Consensus 578 l~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~-~~~L~p~~~~i~~~~~~~l~~~~---~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 578 FSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY-PQLVLPNFDMLYNHVKQLLSNEL---LLTQMEKCALMEALV 653 (1204)
T ss_dssp HHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC-HHHHGGGHHHHHHHHHHHHHSTT---TSCHHHHHHHHHHHH
T ss_pred HHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhCcc---cccHHHHHHHHHHHH
Confidence 888876211 1123455555666666554 44578999999998887654322 022344455555554
Q ss_pred HH
Q 009148 382 QA 383 (542)
Q Consensus 382 ~a 383 (542)
..
T Consensus 654 ~i 655 (1204)
T 3a6p_A 654 LI 655 (1204)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 146
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=28.14 E-value=1.1e+02 Score=29.69 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcCC
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVE---YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRNV 70 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVE---yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~nv 70 (542)
-++..++..|+ .++++++..|+.... ..+..+++.+..++....+..++.+|+..++...++
T Consensus 192 il~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 192 ILQKAALKLNK-TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHHHHTTC-EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCC
Confidence 34556667787 499999999998433 245566777777777777889999999999987543
No 147
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=27.76 E-value=95 Score=34.87 Aligned_cols=137 Identities=12% Similarity=0.077 Sum_probs=73.5
Q ss_pred HHHHhcc-ccCCCCCC-ccHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHhhCHHH
Q 009148 262 VTCLVAK-RLGNRLAD-NHWELRDFTAKLVAAICKRYGHVYNTLQTRLTKTLLNALLDPKRALTQHYGAVQGLAALGPNV 339 (542)
Q Consensus 262 LTCll~k-~l~~~~~~-~hw~LRd~AA~lL~~I~~k~~~~y~~L~~RI~~tL~k~llDp~ksl~t~YGAI~GL~aLG~~a 339 (542)
|-|+++- ++|.--.| ----+|+-||++|+.+ ...... -+++..+.+-+ ........+|++.||..+
T Consensus 223 LLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l--~~~~WEVRHGGLLGLKYL---- 290 (800)
T 3oc3_A 223 IYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFL--DSGDWQVQFSGLIALGYL---- 290 (800)
T ss_dssp HHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGG--GCSCHHHHHHHHHHHHHT----
T ss_pred HHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhc--CCCCeeehhhhHHHHHHH----
Confidence 4455443 44432222 2347999999999999 554444 24555555433 356799999999999999
Q ss_pred HHHhhccChHHHHHhhhHhHhhhhhhhhhhhhhHHHHHHH----HHHHHHHHHHHhhhcCCCCCCCCcchhhcccCcccc
Q 009148 340 VRLLLLPNLGPYLSLLEPEMLLEKQKNEVKRHEAWRVYGA----LLQAAGQCIYDRLKIFPPLSSLPARSVWKTNGIVAT 415 (542)
Q Consensus 340 Vr~lilP~L~~y~~~Le~~l~~~~~~~~~~r~ea~~v~ga----Ll~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (542)
..++ ..+......+-.++.+. .++++-.-|.-+.-+ -+..+-..+-+.|... -..|+++.++-.-=+++.+
T Consensus 291 -~DLL-~~Ld~Vv~aVL~GL~D~--DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~L-DDLSASTgSVMdLLAkL~s 365 (800)
T 3oc3_A 291 -KEFV-EDKDGLCRKLVSLLSSP--DEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESE-ELISVSKTSNLSLLTKIYR 365 (800)
T ss_dssp -GGGC-CCHHHHHHHHHHHTTCS--SHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTC-CSCCTTHHHHHHHHHHHHH
T ss_pred -HHHH-HHHHHHHHHHHhhcCCc--ccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhh-cccchhhHHHHHHHHHHHc
Confidence 2222 23566665555555432 222222222221111 1222223344444444 4567777666555555555
No 148
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=27.58 E-value=66 Score=30.14 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=35.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 26 ALALAPDVEY----RIREIMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 26 a~~La~dVEy----rlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
...++....- .|+.++++|..++.+.++..++.+|++.|++..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 252 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 252 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 4556665443 778889999999999999999999999999864
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=27.02 E-value=86 Score=32.23 Aligned_cols=144 Identities=10% Similarity=0.108 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHHHcCCCcHHHHHHHHHHhhhcCCccccchhHHHHHHHHhhccC--CCHHHHHHHHHHHHHhhcCCCC
Q 009148 171 SRELQLYFDKITELAVSRSDSVLFKQALVSLATDSGLHPLVPYFTYFVADEVSRGL--NNYSLLFALMRVVWNLLQNPHI 248 (542)
Q Consensus 171 SkElQ~Yf~kIt~a~l~~~d~~~~~~AL~sL~tD~gL~qLLPYfv~FI~e~V~~nl--~nl~~L~~lmrmv~ALl~Np~L 248 (542)
+.|.-.+...-.+.++...++-.|+.|+-+.. .|.+..|-++.-+.+++..-+ +|......-+.+...+..+...
T Consensus 133 ~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~ 209 (355)
T 3tjz_B 133 DSTMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL 209 (355)
T ss_dssp CTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH
Confidence 33444455554444555566667776664433 355556666655555555444 4555555556666666655422
Q ss_pred ccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHhcCCCCCchhhhh
Q 009148 249 QIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGHVY-NTLQTRLTKTLLNALLDPKRALTQHYG 327 (542)
Q Consensus 249 ~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~~y-~~L~~RI~~tL~k~llDp~ksl~t~YG 327 (542)
-+..|++.+- + ....+.|..= .+-+++.+++... +.....+...+...|. +++-...|.
T Consensus 210 ----a~~kLv~~l~-----~----~~l~~~~~q~-----~llr~l~~~~~~d~~~~~~~~~~~l~~~L~--~~~~aVvyE 269 (355)
T 3tjz_B 210 ----AVSKMISKFT-----R----HGLKSPFAYC-----MMIRVASRQLEDEDGSRDSPLFDFIESCLR--NKHEMVVYE 269 (355)
T ss_dssp ----HHHHHHHHHH-----S----SCCSCHHHHH-----HHHHHHTCC-----------------CCCC--CSSHHHHHH
T ss_pred ----HHHHHHHHHh-----c----CCCcChHHHH-----HHHHHHHHhccccchhhHHHHHHHHHHHHc--CCChHHHHH
Confidence 2222333221 1 1223445432 2233444666666 5667777777666665 678899999
Q ss_pred HHHHHHhhCH
Q 009148 328 AVQGLAALGP 337 (542)
Q Consensus 328 AI~GL~aLG~ 337 (542)
|+..+..+..
T Consensus 270 a~k~I~~l~~ 279 (355)
T 3tjz_B 270 AASAIVNLPG 279 (355)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhccC
Confidence 9999999865
No 150
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=25.98 E-value=1.2e+02 Score=25.01 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=29.9
Q ss_pred CCCCChHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Q 009148 1 MSIVPKETVEVIAQSIGISNFSTDAALALAPDVEYRIRE 39 (542)
Q Consensus 1 Ms~~p~e~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre 39 (542)
|+ +..+.|+.+|+-.-+. ++++-...++.+++..+.-
T Consensus 4 M~-i~~e~V~~iA~LArL~-l~eeE~~~~~~~l~~Il~~ 40 (92)
T 3kfu_G 4 ME-LSPELLRKLETLAKIR-LSPEEEALLLQDLKRILDF 40 (92)
T ss_dssp -C-CCHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHHHH
T ss_pred Cc-cCHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHH
Confidence 44 8999999999999995 9999888888877655543
No 151
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=24.89 E-value=8.9e+02 Score=28.40 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=50.8
Q ss_pred hcCCccccchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHH---hccc-cCCCC----
Q 009148 203 TDSGLHPLVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCL---VAKR-LGNRL---- 274 (542)
Q Consensus 203 tD~gL~qLLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCl---l~k~-l~~~~---- 274 (542)
..+.++++++++..|.. + .+...-...+.+-.+++++..+...+.+..+++.++.++ +.|- .....
T Consensus 345 ~~~~l~~~l~~lL~~t~----~--~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~ 418 (1204)
T 3a6p_A 345 TPSNFGKYLESFLAFTT----H--PSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPS 418 (1204)
T ss_dssp CCTTHHHHHHHHHHHHT----S--SCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTH
T ss_pred ChhHHHHHHHHHHHHHh----C--ccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcc
Confidence 44556666666666653 2 244444445555556777765443444444555555554 3331 21100
Q ss_pred -------C-------CccHHHHHHHHHHHHHHHHHhC
Q 009148 275 -------A-------DNHWELRDFTAKLVAAICKRYG 297 (542)
Q Consensus 275 -------~-------~~hw~LRd~AA~lL~~I~~k~~ 297 (542)
. ..-|.+|...+.++..||..+.
T Consensus 419 ~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p 455 (1204)
T 3a6p_A 419 CEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP 455 (1204)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 0 1248999999999999998874
No 152
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=24.78 E-value=1.2e+02 Score=30.44 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------------hCCCccCHHHHHHHHHhc
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVE----YRIREIMQEAIKCMRH------------SRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVE----yrlreIiqeA~kfmrh------------skR~~Lt~~DI~~AL~~~ 68 (542)
-++.+++..|+. +++++...|+...+ ..|+.++++|.....+ .....++.+|+..|++..
T Consensus 259 il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~ 334 (357)
T 3d8b_A 259 IVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334 (357)
T ss_dssp HHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhc
Confidence 355566667764 88998888888655 3677788877665554 234679999999999753
No 153
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.36 E-value=65 Score=33.91 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.4
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 26 ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 26 a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
...||+..+ .-|+.++++|..++.+.+|..+|.+|+..|++.
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 355665544 468899999999998889999999999999974
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=24.12 E-value=95 Score=29.79 Aligned_cols=60 Identities=17% Similarity=0.209 Sum_probs=42.1
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHhcC
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVE---YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKLRN 69 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVE---yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~~n 69 (542)
++..++..|+ .++++++..|+.... ..++++++.+..++....+..++.+|+..++....
T Consensus 177 l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 177 VMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALG 239 (324)
T ss_dssp HHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc
Confidence 4445555677 499999999887642 34455566655555555677899999999998754
No 155
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=24.02 E-value=6.1e+02 Score=26.18 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHh------hhcCCccc-----cchhHHHHHHHHhhccCCCHHHHHHHHHHHHHhhcCC
Q 009148 178 FDKITELAVSRSDSVLFKQALVSL------ATDSGLHP-----LVPYFTYFVADEVSRGLNNYSLLFALMRVVWNLLQNP 246 (542)
Q Consensus 178 f~kIt~a~l~~~d~~~~~~AL~sL------~tD~gL~q-----LLPYfv~FI~e~V~~nl~nl~~L~~lmrmv~ALl~Np 246 (542)
.+++++.+.+++. +..-.|...+ +.+|-++. .+|.|++|+... ++..........+..|....
T Consensus 59 i~~~v~~l~s~d~-~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~-----~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNL-ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT-----DCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT-----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC-----CCHHHHHHHHHHHHHHhcCC
Confidence 3567777765543 3333344333 34555544 489999888421 22222222333333333221
Q ss_pred CCccccch-hhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHH
Q 009148 247 HIQIEPYL-HQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICK 294 (542)
Q Consensus 247 ~L~LepYL-HqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~ 294 (542)
.=+-..-+ +-.+|.++.++- ..+-.+|+.|+..|+.|+.
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~---------s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLA---------SPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHc---------CCCHHHHHHHHHHHHHHHh
Confidence 11111111 236788887762 2345899999999999873
No 156
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=23.65 E-value=5.6e+02 Score=29.19 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHH------hCCCchh
Q 009148 229 YSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKR------YGHVYNT 302 (542)
Q Consensus 229 l~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k------~~~~y~~ 302 (542)
........+++.+|..|+...-.--=+.-+|++|..+....- ..+ ..|..||..|++|.-. |+ .|..
T Consensus 471 ~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~----~~~--~~k~~AA~ALArLlis~np~~~f~-~~~~ 543 (778)
T 3opb_A 471 PNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD----IGE--PIRILGCRALTRMLIFTNPGLIFK-KYSA 543 (778)
T ss_dssp HHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------CC--HHHHHHHHHHHHHHHTSCHHHHSS-SSCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC----cch--HHHHHHHHHHHHHHhcCCHHHHcC-CCcc
Confidence 344556778888888886654333334567888877644321 111 5899999999999832 33 2221
Q ss_pred HHHHHHHHHHHHhc-CCCC-----------CchhhhhHHHHHHhh--CH----HHHHHhhccChHHHHHhhhHhHhhhhh
Q 009148 303 LQTRLTKTLLNALL-DPKR-----------ALTQHYGAVQGLAAL--GP----NVVRLLLLPNLGPYLSLLEPEMLLEKQ 364 (542)
Q Consensus 303 L~~RI~~tL~k~ll-Dp~k-----------sl~t~YGAI~GL~aL--G~----~aVr~lilP~L~~y~~~Le~~l~~~~~ 364 (542)
+ -.++-|.+-|. +|.. +.-.+|-|+.+|..| ++ +.+|..|+-. ...|..|+.-|..
T Consensus 544 ~--~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s--- 617 (778)
T 3opb_A 544 L--NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLD--- 617 (778)
T ss_dssp T--THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGC---
T ss_pred c--cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhC---
Confidence 1 35555655554 2332 223488999997777 22 3456655433 1256666665543
Q ss_pred hhhhhhhhHHHHHHHHHH
Q 009148 365 KNEVKRHEAWRVYGALLQ 382 (542)
Q Consensus 365 ~~~~~r~ea~~v~gaLl~ 382 (542)
.+...|-.|..+...|..
T Consensus 618 ~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 618 ENVPLQRSTLELISNMMS 635 (778)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 234455566666555553
No 157
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=23.09 E-value=1.9e+02 Score=23.36 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPD-----VEYRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~d-----VEyrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+|..+|+.+|++ ..-....+.+. -+|..+.-++.|.+.+..+.. .++..||-..+
T Consensus 20 ~~~~lA~~~~~s--~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~-~~si~~IA~~~ 79 (108)
T 3mn2_A 20 TIEKLTALTGIS--SRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGAT-PTTVTAAALSC 79 (108)
T ss_dssp CHHHHHHHHTCC--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSS-CCCHHHHHHHT
T ss_pred CHHHHHHHHCCC--HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHh
Confidence 578889999885 22333333333 367777778899999888754 58888887765
No 158
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=22.94 E-value=57 Score=30.52 Aligned_cols=45 Identities=22% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHH
Q 009148 21 FSTDA-ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEAL 65 (542)
Q Consensus 21 Lsdea-a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL 65 (542)
+++++ ...||+..+ -.|+.++++|...+...++..+|.+|+..|+
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 44443 556776654 3588999999999888888899999999986
No 159
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=22.64 E-value=56 Score=31.86 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCCCcc-CHHHHHHHHHh
Q 009148 8 TVEVIAQSIGISNFSTDAALALAPDVEYRIREIMQEAIKCMRH-------SRRTTL-TTDDVDEALKL 67 (542)
Q Consensus 8 ~Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlreIiqeA~kfmrh-------skR~~L-t~~DI~~AL~~ 67 (542)
-++..++..|+ .+++++...|+... --+|++..-..+.... .+.+.+ |.+||..++..
T Consensus 174 il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 174 IIKEKLKEFNL-ELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp HHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHH
Confidence 34555667788 59999999999877 5555544333333333 334568 89999998873
No 160
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=22.30 E-value=5.9e+02 Score=27.05 Aligned_cols=97 Identities=14% Similarity=0.089 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhCC-CchhHHHH
Q 009148 228 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYGH-VYNTLQTR 306 (542)
Q Consensus 228 nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~~-~y~~L~~R 306 (542)
+.......+..+..|..+..-. ..+..++|.++..+- ...+.+|..|+.+|+.++..... .-.-++..
T Consensus 237 ~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~---------~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 237 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp CHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 4556666777777777664321 234577887776652 24579999999999999863210 00011122
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhh
Q 009148 307 LTKTLLNALLDPKRALTQHYGAVQGLAAL 335 (542)
Q Consensus 307 I~~tL~k~llDp~ksl~t~YGAI~GL~aL 335 (542)
.+..|.+.+.+..........|+..|..|
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL 334 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHL 334 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 34455555543222234445555555555
No 161
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=21.64 E-value=3.8e+02 Score=26.98 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHHHhC-CCchhHHHH
Q 009148 228 NYSLLFALMRVVWNLLQNPHIQIEPYLHQLMPSVVTCLVAKRLGNRLADNHWELRDFTAKLVAAICKRYG-HVYNTLQTR 306 (542)
Q Consensus 228 nl~~L~~lmrmv~ALl~Np~L~LepYLHqLlPsvLTCll~k~l~~~~~~~hw~LRd~AA~lL~~I~~k~~-~~y~~L~~R 306 (542)
+.......+..+..|..++.-. .....++|.++..+- +....+|..|+..|+.++.... ....-.+..
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~---------~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 308 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLG---------SDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 308 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTT---------CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHc---------CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 4455555666677777665322 234577888777651 2456899999999999976311 000111222
Q ss_pred HHHHHHHHhcCCCCCchhhhhHHHHHHhhC
Q 009148 307 LTKTLLNALLDPKRALTQHYGAVQGLAALG 336 (542)
Q Consensus 307 I~~tL~k~llDp~ksl~t~YGAI~GL~aLG 336 (542)
.+..|.+.+.++........-|+..|..|.
T Consensus 309 ~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~ 338 (529)
T 1jdh_A 309 GIEALVRTVLRAGDREDITEPAICALRHLT 338 (529)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 445566666543444567788888888774
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.36 E-value=79 Score=33.44 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 27 LALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 27 ~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
..||+..+ .-|+.++++|..++.+.+|..++.+|+..|++.
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 377 EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 44554433 468899999999999999999999999999974
No 163
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.28 E-value=80 Score=33.90 Aligned_cols=41 Identities=20% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHh
Q 009148 27 LALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALKL 67 (542)
Q Consensus 27 ~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~~ 67 (542)
..||+..+ .-|+.++++|..++.+.+|+.+|.+|+..|++.
T Consensus 405 ~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 405 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 44555433 468899999999999999999999999999974
No 164
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.88 E-value=65 Score=30.77 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=35.1
Q ss_pred CCHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Q 009148 21 FSTDA-ALALAPDVE----YRIREIMQEAIKCMRHSRRTTLTTDDVDEALK 66 (542)
Q Consensus 21 Lsdea-a~~La~dVE----yrlreIiqeA~kfmrhskR~~Lt~~DI~~AL~ 66 (542)
+++++ ...||...+ -.|+.++++|..++...++..+|.+|+..|++
T Consensus 228 ~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 228 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 44444 556666554 35888999999998888888999999999863
No 165
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=20.19 E-value=74 Score=33.14 Aligned_cols=58 Identities=9% Similarity=0.040 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCccCHHHHHHHHHhc
Q 009148 9 VEVIAQSIGISNFSTDAALALAPDVEYRIRE---IMQEAIKCMRHSRRTTLTTDDVDEALKLR 68 (542)
Q Consensus 9 Ik~iAes~Gi~~Lsdeaa~~La~dVEyrlre---IiqeA~kfmrhskR~~Lt~~DI~~AL~~~ 68 (542)
++..++..|+ .++++++..|+....--+|+ +++.+..++...++ .+|.+++..||+..
T Consensus 272 L~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred HHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 4455666788 49999999999887654554 45556666655454 69999999999754
Done!