Query 009149
Match_columns 542
No_of_seqs 230 out of 1729
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 21:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 6E-110 1E-114 889.3 61.5 515 23-538 24-538 (539)
2 PLN02991 oxidoreductase 100.0 2E-109 4E-114 881.5 61.4 513 24-537 24-536 (543)
3 PLN02354 copper ion binding / 100.0 2E-108 5E-113 878.1 59.7 513 25-538 24-545 (552)
4 PLN00044 multi-copper oxidase- 100.0 3E-107 6E-112 868.8 59.6 522 19-541 18-564 (596)
5 PLN02792 oxidoreductase 100.0 2E-107 5E-112 866.5 58.6 514 24-538 12-530 (536)
6 PLN02168 copper ion binding / 100.0 2E-106 4E-111 860.2 59.4 509 25-533 23-543 (545)
7 TIGR03389 laccase laccase, pla 100.0 5.8E-99 1E-103 812.1 58.5 496 27-531 2-539 (539)
8 KOG1263 Multicopper oxidases [ 100.0 6.1E-99 1E-103 795.7 57.2 519 19-538 19-562 (563)
9 PLN02604 oxidoreductase 100.0 2.6E-96 6E-101 793.0 58.8 509 11-536 7-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 2E-96 4E-101 792.0 56.3 495 25-537 20-567 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.1E-95 2E-100 786.0 56.7 487 28-532 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 3.2E-93 6.9E-98 764.7 53.3 476 29-515 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 5.3E-80 1.1E-84 661.3 51.3 427 28-512 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1E-79 2.2E-84 654.7 47.3 436 28-512 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.8E-77 3.9E-82 632.4 44.8 399 30-513 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 1E-61 2.2E-66 515.1 42.6 412 30-513 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 9.7E-49 2.1E-53 392.9 27.1 265 21-298 20-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 3.2E-36 6.9E-41 258.6 12.4 115 34-148 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.8E-30 8.2E-35 229.7 11.7 108 406-513 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 2.2E-26 4.8E-31 210.0 14.6 138 160-297 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.4E-18 3E-23 154.9 12.0 103 42-146 36-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 7.7E-16 1.7E-20 155.0 22.2 244 190-513 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.7 5.1E-16 1.1E-20 167.7 12.4 100 45-146 483-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 2.8E-13 6.1E-18 116.6 11.0 109 9-132 5-121 (135)
25 PRK10965 multicopper oxidase; 99.3 3.7E-10 8E-15 121.5 23.3 247 29-280 180-509 (523)
26 TIGR03389 laccase laccase, pla 99.3 1.8E-10 4E-15 125.1 20.1 239 191-497 23-264 (539)
27 PLN02835 oxidoreductase 99.2 8.1E-10 1.8E-14 119.3 20.9 225 191-494 49-276 (539)
28 PLN02354 copper ion binding / 99.2 1.4E-09 3E-14 117.7 19.2 232 191-496 47-283 (552)
29 PLN02168 copper ion binding / 99.1 3.6E-09 7.8E-14 114.0 20.2 219 191-487 46-267 (545)
30 PRK10883 FtsI repressor; Provi 99.1 2E-09 4.3E-14 114.7 18.0 234 30-280 181-454 (471)
31 PLN02792 oxidoreductase 99.1 3.5E-09 7.5E-14 114.1 19.2 226 191-494 36-267 (536)
32 PLN02991 oxidoreductase 99.1 3.2E-09 6.9E-14 114.3 18.2 224 191-493 48-276 (543)
33 TIGR03390 ascorbOXfungal L-asc 99.1 8.9E-09 1.9E-13 111.7 20.8 242 191-495 28-281 (538)
34 PLN00044 multi-copper oxidase- 99.0 2.2E-08 4.7E-13 108.7 20.0 236 191-492 49-291 (596)
35 TIGR03388 ascorbase L-ascorbat 99.0 4E-08 8.6E-13 106.9 20.2 258 190-497 20-281 (541)
36 COG2132 SufI Putative multicop 99.0 1.3E-08 2.8E-13 108.7 16.0 228 44-280 186-435 (451)
37 PLN02604 oxidoreductase 99.0 4.5E-08 9.7E-13 106.9 20.3 256 190-497 43-302 (566)
38 PF07731 Cu-oxidase_2: Multico 98.8 3.9E-09 8.5E-14 93.9 6.0 89 58-147 33-136 (138)
39 PLN02191 L-ascorbate oxidase 98.8 2.2E-07 4.7E-12 101.4 19.3 256 190-494 42-301 (574)
40 PF07732 Cu-oxidase_3: Multico 98.8 4.7E-08 1E-12 84.0 9.7 90 411-514 26-116 (117)
41 KOG1263 Multicopper oxidases [ 98.6 4.5E-06 9.7E-11 89.9 20.6 229 191-497 48-287 (563)
42 PRK02710 plastocyanin; Provisi 98.6 7.4E-07 1.6E-11 76.9 11.7 74 58-146 46-119 (119)
43 PF13473 Cupredoxin_1: Cupredo 98.3 1.4E-06 3E-11 73.4 6.9 71 58-145 34-104 (104)
44 TIGR02656 cyanin_plasto plasto 98.3 4.8E-06 1E-10 69.4 8.7 83 57-146 15-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.2 4.7E-06 1E-10 76.0 7.6 92 410-512 59-156 (159)
46 PF00127 Copper-bind: Copper b 98.1 7.8E-06 1.7E-10 68.1 6.5 79 56-146 14-99 (99)
47 TIGR02657 amicyanin amicyanin. 98.0 3.8E-05 8.2E-10 61.7 8.3 74 58-146 10-83 (83)
48 PRK02888 nitrous-oxide reducta 98.0 2.9E-05 6.3E-10 83.5 9.7 98 39-148 533-635 (635)
49 TIGR03095 rusti_cyanin rusticy 98.0 3.4E-05 7.4E-10 69.0 8.6 88 411-511 52-147 (148)
50 TIGR03094 sulfo_cyanin sulfocy 97.8 0.00019 4.2E-09 64.4 11.0 99 49-148 74-187 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.7 0.00034 7.4E-09 64.2 10.3 100 48-148 74-188 (196)
52 TIGR02656 cyanin_plasto plasto 97.5 0.00033 7.3E-09 58.3 7.6 82 412-512 18-99 (99)
53 COG3794 PetE Plastocyanin [Ene 97.5 0.00046 1E-08 59.5 8.1 75 59-147 54-128 (128)
54 TIGR02375 pseudoazurin pseudoa 97.5 0.00067 1.5E-08 57.9 9.1 75 58-148 14-89 (116)
55 TIGR03096 nitroso_cyanin nitro 97.4 0.00069 1.5E-08 58.9 8.0 59 412-497 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.1 0.0031 6.7E-08 53.7 8.5 73 58-146 41-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.6 0.006 1.3E-07 51.2 6.7 60 412-498 36-95 (104)
58 PF00127 Copper-bind: Copper b 96.5 0.021 4.5E-07 47.5 9.1 82 411-512 17-99 (99)
59 PRK02710 plastocyanin; Provisi 96.0 0.027 5.8E-07 48.5 7.3 70 413-511 49-118 (119)
60 PRK02888 nitrous-oxide reducta 95.9 0.027 5.9E-07 61.1 8.6 74 412-512 556-633 (635)
61 TIGR02657 amicyanin amicyanin. 95.5 0.099 2.1E-06 41.8 8.3 71 412-511 12-82 (83)
62 TIGR02375 pseudoazurin pseudoa 94.9 0.17 3.8E-06 43.1 8.6 38 475-516 54-91 (116)
63 COG4454 Uncharacterized copper 94.7 0.093 2E-06 46.4 6.4 93 413-512 65-157 (158)
64 PF00116 COX2: Cytochrome C ox 94.2 0.23 4.9E-06 42.8 7.6 74 58-145 45-119 (120)
65 PRK10378 inactive ferrous ion 93.6 0.6 1.3E-05 48.1 10.7 76 56-148 41-118 (375)
66 PF00116 COX2: Cytochrome C ox 93.5 0.87 1.9E-05 39.2 10.1 75 410-512 45-120 (120)
67 COG4454 Uncharacterized copper 93.4 0.16 3.6E-06 44.9 5.4 74 202-279 63-142 (158)
68 TIGR03102 halo_cynanin halocya 93.3 0.63 1.4E-05 39.6 8.6 72 413-512 44-115 (115)
69 PF06525 SoxE: Sulfocyanin (So 92.6 2.5 5.4E-05 39.3 12.0 95 412-513 87-187 (196)
70 TIGR02695 azurin azurin. Azuri 91.0 1.4 3E-05 37.8 7.9 84 58-144 15-124 (125)
71 COG3794 PetE Plastocyanin [Ene 91.0 1.2 2.6E-05 38.6 7.7 72 413-512 56-127 (128)
72 TIGR02866 CoxB cytochrome c ox 89.9 1.3 2.8E-05 41.9 7.7 78 411-516 117-195 (201)
73 TIGR03094 sulfo_cyanin sulfocy 87.5 10 0.00022 34.7 11.2 94 412-512 86-185 (195)
74 TIGR02866 CoxB cytochrome c ox 86.6 5.1 0.00011 37.8 9.5 77 58-148 116-193 (201)
75 COG1622 CyoA Heme/copper-type 86.4 2.8 6E-05 40.9 7.7 79 410-516 136-215 (247)
76 PF12690 BsuPI: Intracellular 86.0 8.3 0.00018 30.7 8.9 66 211-277 3-82 (82)
77 COG4263 NosZ Nitrous oxide red 84.6 1.5 3.3E-05 45.4 5.1 78 59-146 558-636 (637)
78 COG1622 CyoA Heme/copper-type 81.8 8.1 0.00018 37.7 8.7 78 58-149 136-214 (247)
79 TIGR02695 azurin azurin. Azuri 81.7 9.3 0.0002 32.8 7.9 77 202-278 16-111 (125)
80 TIGR01433 CyoA cytochrome o ub 78.1 5.1 0.00011 38.6 5.9 76 413-516 141-217 (226)
81 PF05938 Self-incomp_S1: Plant 76.0 7.9 0.00017 32.5 6.0 68 70-147 2-70 (110)
82 MTH00140 COX2 cytochrome c oxi 75.4 10 0.00022 36.6 7.2 79 410-516 139-218 (228)
83 PTZ00047 cytochrome c oxidase 71.1 19 0.00041 32.5 7.3 77 412-516 74-151 (162)
84 COG2967 ApaG Uncharacterized p 70.6 5 0.00011 33.9 3.2 65 71-149 34-106 (126)
85 PF14344 DUF4397: Domain of un 69.7 68 0.0015 27.1 10.8 20 213-232 3-23 (122)
86 TIGR01432 QOXA cytochrome aa3 68.1 12 0.00026 35.7 5.9 76 413-516 132-208 (217)
87 TIGR03079 CH4_NH3mon_ox_B meth 66.5 29 0.00062 35.4 8.2 17 103-119 337-353 (399)
88 MTH00047 COX2 cytochrome c oxi 66.4 41 0.00088 31.6 8.9 76 412-515 117-193 (194)
89 PF07705 CARDB: CARDB; InterP 62.5 78 0.0017 25.2 10.0 66 204-278 13-82 (101)
90 PF10633 NPCBM_assoc: NPCBM-as 60.3 64 0.0014 24.9 7.8 65 206-279 1-75 (78)
91 MTH00098 COX2 cytochrome c oxi 59.9 33 0.00072 33.0 7.2 78 411-516 140-218 (227)
92 PF01835 A2M_N: MG2 domain; I 59.9 37 0.0008 27.6 6.7 70 206-279 11-85 (99)
93 MTH00129 COX2 cytochrome c oxi 59.7 30 0.00064 33.4 6.8 78 411-516 140-218 (230)
94 PF04151 PPC: Bacterial pre-pe 59.5 58 0.0013 24.6 7.3 65 202-278 5-69 (70)
95 PF12690 BsuPI: Intracellular 57.5 82 0.0018 25.0 7.9 57 60-127 17-80 (82)
96 MTH00008 COX2 cytochrome c oxi 54.5 47 0.001 32.0 7.3 78 411-516 140-218 (228)
97 MTH00139 COX2 cytochrome c oxi 51.9 48 0.001 31.9 6.9 79 410-516 139-218 (226)
98 MTH00185 COX2 cytochrome c oxi 50.9 65 0.0014 31.1 7.6 79 410-516 139-218 (230)
99 MTH00154 COX2 cytochrome c oxi 50.1 58 0.0013 31.4 7.1 78 411-516 140-218 (227)
100 MTH00023 COX2 cytochrome c oxi 47.9 82 0.0018 30.6 7.8 78 411-516 151-229 (240)
101 PF05506 DUF756: Domain of unk 47.7 1.1E+02 0.0025 24.3 7.5 65 57-127 7-74 (89)
102 MTH00038 COX2 cytochrome c oxi 46.7 59 0.0013 31.3 6.6 78 411-516 140-218 (229)
103 COG1470 Predicted membrane pro 46.2 4E+02 0.0087 28.5 16.5 179 61-282 278-470 (513)
104 MTH00117 COX2 cytochrome c oxi 45.8 76 0.0016 30.5 7.2 78 411-516 140-218 (227)
105 MTH00051 COX2 cytochrome c oxi 45.7 75 0.0016 30.8 7.1 78 411-516 144-222 (234)
106 COG3354 FlaG Putative archaeal 44.6 2.2E+02 0.0049 25.1 10.6 82 191-278 51-141 (154)
107 PF04744 Monooxygenase_B: Mono 44.1 57 0.0012 33.4 6.1 101 31-144 249-377 (381)
108 PF07691 PA14: PA14 domain; I 44.0 1.6E+02 0.0035 25.3 8.6 61 203-268 53-120 (145)
109 PRK10378 inactive ferrous ion 43.6 74 0.0016 33.1 7.1 85 192-297 33-118 (375)
110 MTH00027 COX2 cytochrome c oxi 43.2 69 0.0015 31.6 6.5 78 411-516 174-252 (262)
111 PRK05461 apaG CO2+/MG2+ efflux 43.2 28 0.00061 30.2 3.4 45 71-115 35-85 (127)
112 PF11614 FixG_C: IG-like fold 42.7 99 0.0021 26.1 6.8 49 211-267 34-83 (118)
113 PRK10525 cytochrome o ubiquino 42.3 58 0.0012 33.0 5.9 76 413-516 153-230 (315)
114 MTH00047 COX2 cytochrome c oxi 41.4 1.6E+02 0.0035 27.5 8.4 75 60-148 117-192 (194)
115 MTH00080 COX2 cytochrome c oxi 40.7 89 0.0019 30.2 6.8 78 411-516 143-221 (231)
116 MTH00076 COX2 cytochrome c oxi 40.3 87 0.0019 30.2 6.7 78 411-516 140-218 (228)
117 smart00758 PA14 domain in bact 39.8 1.9E+02 0.0042 24.7 8.4 61 204-269 52-113 (136)
118 MTH00168 COX2 cytochrome c oxi 39.6 81 0.0017 30.3 6.3 78 411-516 140-218 (225)
119 PF11142 DUF2917: Protein of u 38.9 82 0.0018 23.6 4.9 46 204-261 2-47 (63)
120 PF14874 PapD-like: Flagellar- 37.1 2.2E+02 0.0048 22.9 9.5 60 205-276 15-83 (102)
121 PF15415 DUF4622: Protein of u 36.3 2.5E+02 0.0054 27.1 8.6 43 202-245 94-137 (310)
122 COG4633 Plastocyanin domain co 35.5 2E+02 0.0044 27.4 7.8 88 42-150 80-172 (272)
123 PF14524 Wzt_C: Wzt C-terminal 34.6 1.4E+02 0.0031 25.4 6.8 83 193-279 19-107 (142)
124 COG1188 Ribosome-associated he 32.8 32 0.00068 28.4 1.9 30 50-79 36-65 (100)
125 PF10989 DUF2808: Protein of u 30.9 58 0.0013 28.9 3.5 26 473-498 99-128 (146)
126 PRK13202 ureB urease subunit b 30.3 1.5E+02 0.0033 24.6 5.4 63 203-266 12-84 (104)
127 MTH00140 COX2 cytochrome c oxi 29.9 2.6E+02 0.0056 26.9 8.1 76 58-147 139-215 (228)
128 PF14392 zf-CCHC_4: Zinc knuck 29.8 77 0.0017 22.3 3.3 40 464-503 5-45 (49)
129 MTH00008 COX2 cytochrome c oxi 28.6 1.7E+02 0.0038 28.1 6.6 60 202-280 140-199 (228)
130 TIGR01433 CyoA cytochrome o ub 27.4 1.5E+02 0.0033 28.4 6.0 60 202-280 139-198 (226)
131 PTZ00047 cytochrome c oxidase 27.3 3E+02 0.0064 25.0 7.3 60 202-280 73-132 (162)
132 cd00918 Der-p2_like Several gr 26.6 3.2E+02 0.0069 23.4 7.2 61 59-119 20-88 (120)
133 MTH00129 COX2 cytochrome c oxi 25.0 1.9E+02 0.0041 27.9 6.1 60 202-280 140-199 (230)
134 TIGR00192 urease_beta urease, 24.4 2.3E+02 0.005 23.4 5.5 63 203-266 12-83 (101)
135 KOG1554 COP9 signalosome, subu 24.2 56 0.0012 32.1 2.3 25 124-148 134-173 (347)
136 PF04379 DUF525: Protein of un 24.0 2.1E+02 0.0045 23.2 5.2 49 211-262 15-67 (90)
137 MTH00098 COX2 cytochrome c oxi 23.7 2.2E+02 0.0048 27.4 6.3 60 202-280 140-199 (227)
138 PF10989 DUF2808: Protein of u 23.7 1E+02 0.0022 27.3 3.8 29 103-131 96-127 (146)
139 cd00916 Npc2_like Niemann-Pick 22.9 3.2E+02 0.0069 23.3 6.6 59 61-119 24-92 (123)
140 MTH00051 COX2 cytochrome c oxi 22.8 2.4E+02 0.0052 27.2 6.4 60 202-280 144-203 (234)
141 TIGR01432 QOXA cytochrome aa3 22.5 2E+02 0.0044 27.4 5.8 60 202-280 130-189 (217)
142 PF14016 DUF4232: Protein of u 22.4 3.4E+02 0.0074 23.3 6.8 54 211-267 21-81 (131)
143 KOG4387 Ornithine decarboxylas 21.5 37 0.00081 30.9 0.5 30 60-89 70-99 (191)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=6.3e-110 Score=889.35 Aligned_cols=515 Identities=62% Similarity=1.110 Sum_probs=422.7
Q ss_pred ecCCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc
Q 009149 23 SAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT 102 (542)
Q Consensus 23 ~~~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~ 102 (542)
.+++.+++|+|+|++..+++||+++.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||++|..++++||++++
T Consensus 24 ~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~t 103 (539)
T PLN02835 24 NGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGT 103 (539)
T ss_pred hccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhc
Q 009149 103 TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLD 182 (542)
Q Consensus 103 q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (542)
||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++...+.+|..+++|++++++||+++...++...+.
T Consensus 104 Q~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 183 (539)
T PLN02835 104 NCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLD 183 (539)
T ss_pred cCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhh
Confidence 99999999999999987789999999999999999999999998765555566667899999999999998766655555
Q ss_pred cCCCCCCCCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEE
Q 009149 183 KGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSV 262 (542)
Q Consensus 183 ~~~~~~~~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv 262 (542)
.+...+.++.+||||+.. +.++|++||+|||||||+|..+.+.|+|+||+|+||++||.+++|..+++|.|++||||||
T Consensus 184 ~g~~~~~~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydv 262 (539)
T PLN02835 184 SGKVLPFPDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAV 262 (539)
T ss_pred cCCCCCCCceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEE
Confidence 555567889999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCc
Q 009149 263 LVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHY 342 (542)
Q Consensus 263 ~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~ 342 (542)
+|++++++|+|||++............|||+|+++..+.+.++|..|..+..++...+......+.+....+.+..+...
T Consensus 263 lv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 342 (539)
T PLN02835 263 LVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHY 342 (539)
T ss_pred EEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccc
Confidence 99999888999999875443344678999999886532222333322111111122222222233333233333222212
Q ss_pred cccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEE
Q 009149 343 GLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIE 422 (542)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~ 422 (542)
.....++++.+.......++...|+|||.+|..|++|+|++.++..++.|+.+++...+.+...+.++.++.++.|++||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Ve 422 (539)
T PLN02835 343 GKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLE 422 (539)
T ss_pred cccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEE
Confidence 22233555544322222246678999999999899999887766666777654333233333355678899999999999
Q ss_pred EEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhh
Q 009149 423 IVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQY 502 (542)
Q Consensus 423 ~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d 502 (542)
|+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+|||||++|+.
T Consensus 423 ivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~ 502 (539)
T PLN02835 423 VVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQY 502 (539)
T ss_pred EEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhh
Confidence 99999988899999999999999999998986555567899999999999999999999999999999999999999999
Q ss_pred cceEEEEEEecCCccccccCCCCCcchhccccCCCC
Q 009149 503 LGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGRH 538 (542)
Q Consensus 503 ~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (542)
.||+++|+|.++.+...++++||++++.||..++..
T Consensus 503 ~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~~~ 538 (539)
T PLN02835 503 LGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIGRH 538 (539)
T ss_pred cccEEEEEEccCCCccccccCCCccccccccCccCC
Confidence 999999999988776667899999999999888744
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.7e-109 Score=881.49 Aligned_cols=513 Identities=79% Similarity=1.321 Sum_probs=427.1
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccC
Q 009149 24 AEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTT 103 (542)
Q Consensus 24 ~~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 103 (542)
+++.+++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++++||++++|
T Consensus 24 ~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQ 103 (543)
T PLN02991 24 AEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTT 103 (543)
T ss_pred ccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhcc
Q 009149 104 CPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDK 183 (542)
Q Consensus 104 ~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~ 183 (542)
|||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++..++.|+..+++|++++|+||+++....+...+..
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~~ 183 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLDN 183 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhhc
Confidence 99999999999999867899999999999999999999999999766666666668899999999999977666555544
Q ss_pred CCCCCCCCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEE
Q 009149 184 GKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVL 263 (542)
Q Consensus 184 ~~~~~~~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~ 263 (542)
+...+.+|.+||||+...+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+
T Consensus 184 ~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvl 263 (543)
T PLN02991 184 GGKLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVL 263 (543)
T ss_pred CCCCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEE
Confidence 54556889999999986688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCcc
Q 009149 264 VTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYG 343 (542)
Q Consensus 264 v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~ 343 (542)
|++++++|+|||++............|||+|+++..+...+.|..|. ...++.......+..+.+....+.|..+....
T Consensus 264 v~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~ 342 (543)
T PLN02991 264 ITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQGSYHYG 342 (543)
T ss_pred EECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCCcccccc
Confidence 99998899999999875544456789999999875322222333331 22222222222223444333333343322222
Q ss_pred ccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEE
Q 009149 344 LINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEI 423 (542)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 423 (542)
....++++.+.......++...|+|||.+|..+++|+|++.++.++++|+.+.+.+.+.+......+.++.++.|++|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vei 422 (543)
T PLN02991 343 KINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEI 422 (543)
T ss_pred ccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEE
Confidence 23345554443322112456789999999999999998887777778887654444444333455677889999999999
Q ss_pred EEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhc
Q 009149 424 VFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYL 503 (542)
Q Consensus 424 ~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~ 503 (542)
+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||++||||.|+|||||..|+..
T Consensus 423 Viqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~ 502 (543)
T PLN02991 423 VFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYL 502 (543)
T ss_pred EEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccc
Confidence 99999888999999999999999999999876556799999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEecCCccccccCCCCCcchhccccCCC
Q 009149 504 GQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGR 537 (542)
Q Consensus 504 GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 537 (542)
||+++++|.++++..+++++||.+.++||..++-
T Consensus 503 gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~ 536 (543)
T PLN02991 503 GQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGH 536 (543)
T ss_pred cEEEEEEecCCCCccccccCCCcccCccccCCCC
Confidence 9999999998888777789999999999877663
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.5e-108 Score=878.13 Aligned_cols=513 Identities=60% Similarity=1.066 Sum_probs=417.5
Q ss_pred CCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCC
Q 009149 25 EDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTC 104 (542)
Q Consensus 25 ~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~ 104 (542)
++.+++|+|+|++...++||+.+++++|||++|||+||+++||+|+|+|+|+|+++++|||||++|.+++++||+|+.||
T Consensus 24 ~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc 103 (552)
T PLN02354 24 EDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC 103 (552)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccC
Q 009149 105 PIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKG 184 (542)
Q Consensus 105 ~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 184 (542)
||+||++|+|+|++.+++||||||||.+.|+.+||+|+|||+++...+.+|+..++|++|+|+||+++...++...+..+
T Consensus 104 pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 183 (552)
T PLN02354 104 PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLDSG 183 (552)
T ss_pred CCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHhcC
Confidence 99999999999997678999999999999999999999999997666667766788999999999999877666655555
Q ss_pred CCCCCCCeEEEcCCCC------CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCc
Q 009149 185 KKLPLPDGILINGRGS------GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQ 258 (542)
Q Consensus 185 ~~~~~~~~~liNG~~~------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pge 258 (542)
...+.++.+||||+.. .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||
T Consensus 184 ~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~Gq 263 (552)
T PLN02354 184 RTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQ 263 (552)
T ss_pred CCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEEccCc
Confidence 4446689999999962 4789999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCC
Q 009149 259 SYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQG 338 (542)
Q Consensus 259 R~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~ 338 (542)
||||+|++++++|+|||++...+........|||+|+++..+.+...|..| ....++...+..+..++.+....+.+..
T Consensus 264 RydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~l~~~~~~p~~~~ 342 (552)
T PLN02354 264 CFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAP-VGWAWSLNQFRSFRWNLTASAARPNPQG 342 (552)
T ss_pred eEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCC-cccccchhhhhhhhhcccccccCCCCCC
Confidence 999999999888999999986544455678999999887543222233222 1111122233333333333222232322
Q ss_pred CCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccC-cceecCCCCCC-CC-CCCccccceEEec
Q 009149 339 SYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIG-GVFRIGSISDN-PT-GGGIYQDTAVMGA 415 (542)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~-~~~~~~~~~~~-p~-~~~~~~~~~~~~~ 415 (542)
.........++++.+...+...++...|+|||.+|..|++|+|++.++++. +.++.+..... |. ......++.++.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~ 422 (552)
T PLN02354 343 SYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNI 422 (552)
T ss_pred ccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEc
Confidence 211122334555555432222245678999999999999999877655443 55443311111 11 1123456788999
Q ss_pred cCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEe
Q 009149 416 DYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRS 495 (542)
Q Consensus 416 ~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HC 495 (542)
+.|++|||+|+|.+...||||||||+||||++|.|.|+++....+|+.||++|||+.|+++||++|||++||||.|+|||
T Consensus 423 ~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HC 502 (552)
T PLN02354 423 TFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRS 502 (552)
T ss_pred CCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeec
Confidence 99999999999998889999999999999999999998766567899999999999999999999999999999999999
Q ss_pred echhhhhcceEEEEEEecCCccccccCCCCCcchhccccCCCC
Q 009149 496 ESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGRH 538 (542)
Q Consensus 496 Hil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (542)
||+.|++.||++.|.|.++.+..++.+++|++.+.|+..++-.
T Consensus 503 Hi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~~ 545 (552)
T PLN02354 503 ENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGLP 545 (552)
T ss_pred cccccccccceEEEEEeCCccccCcCCCCCccccccccccCCC
Confidence 9999999999999999887665656678999999999888654
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2.8e-107 Score=868.81 Aligned_cols=522 Identities=51% Similarity=0.880 Sum_probs=422.3
Q ss_pred eeeeecCCCeEEEEEEEEEEEecCCC--eeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCC
Q 009149 19 FAIVSAEDPYRFFNWNVTYGDIYPLG--VRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFE 96 (542)
Q Consensus 19 ~~~~~~~~~~~~~~l~i~~~~~~~~G--~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~ 96 (542)
.|.+.|++.+++|+|+|++..+++|| ..+.+++|||++|||+||+++||+|+|+|+|+|+++++|||||++|+.++++
T Consensus 18 ~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~ 97 (596)
T PLN00044 18 PAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQ 97 (596)
T ss_pred CCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccc
Confidence 45555778899999999999999999 5568999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCC-CCCeEEEEEeeeccchh
Q 009149 97 DGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDP-AGDYTVLIGDWYKSNHT 175 (542)
Q Consensus 97 DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~-~~e~~l~l~d~~~~~~~ 175 (542)
||+++.||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.||... ++|.+|+|+||++.+..
T Consensus 98 DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~ 177 (596)
T PLN00044 98 DGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHR 177 (596)
T ss_pred cCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHH
Confidence 99987899999999999999987799999999999999999999999999976655666443 37999999999998876
Q ss_pred hHHHhhccCCCCCCCCeEEEcCCCCC-------------ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCc
Q 009149 176 DLRAHLDKGKKLPLPDGILINGRGSG-------------AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGT 242 (542)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~liNG~~~~-------------~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~ 242 (542)
++...+..+.....++.+||||++.. +.++|++|++|||||||++..+.+.|+|+||+|+|||+||.
T Consensus 178 ~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~ 257 (596)
T PLN00044 178 ALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGS 257 (596)
T ss_pred HHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCc
Confidence 66555555544467899999998531 37999999999999999999999999999999999999999
Q ss_pred ccceeeeeeEEEcCCceEEEEEEeCCCCc-ceEEEEeeeec----CCccceEEEEEecCCCCCCCCCCCCCC--cccccc
Q 009149 243 HTLQTTYSSLDVHVGQSYSVLVTADQPAR-DYYIVVSSRFT----STVLTTTGILHYSNSAGPVSGPIPGGP--TVQIDW 315 (542)
Q Consensus 243 ~~~p~~~~~l~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~----~~~~~~~ail~y~~~~~~~~~~~p~~p--~~~~~~ 315 (542)
+++|+.+++|.|++||||||+|+++++++ +|||++..... .+...+.|||+|.++......+.|..| ..+..+
T Consensus 258 ~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~ 337 (596)
T PLN00044 258 YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAF 337 (596)
T ss_pred ccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchh
Confidence 99999999999999999999999998765 89999865321 245678899999886532211233322 122222
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCccccccceEEEeccccc-ccCCeEEEEEcCeeecCCCCchhhhcccccCcceec
Q 009149 316 SLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAG-QVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRI 394 (542)
Q Consensus 316 ~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~ 394 (542)
+.++...+.....+....+.|..+..+......+.+.+..... ...++..|+|||.+|..|++|+|++.+++++++|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~ 417 (596)
T PLN00044 338 SINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKL 417 (596)
T ss_pred hhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccC
Confidence 2223334433333322233333322222222333332221100 113568899999999999999998877777788875
Q ss_pred CCCCCCCCCCCccccceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeC
Q 009149 395 GSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVY 474 (542)
Q Consensus 395 ~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vp 474 (542)
+.....| .......+.++.++.|++|||+|+|.....||||||||+|+||++|.|.|+++....+|+.||++|||+.|+
T Consensus 418 ~fp~~pp-~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp 496 (596)
T PLN00044 418 DFPNHPM-NRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVF 496 (596)
T ss_pred CCCCCCC-ccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeC
Confidence 5322222 222345788899999999999999987789999999999999999999999876678999999999999999
Q ss_pred CCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCcc-ccccCCCCCcchhccccCCCCCCC
Q 009149 475 PKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTS-LRDEYPIPKNARLCGKAAGRHTRP 541 (542)
Q Consensus 475 p~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~~~~~~ 541 (542)
++||++|||++||||.|+||||++.|++.||++.|.|.++.+. .+++++||++++.||..+++..++
T Consensus 497 ~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~~~~~ 564 (596)
T PLN00044 497 PGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSLQKEQ 564 (596)
T ss_pred CCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccCCCCC
Confidence 9999999999999999999999999999999999999887754 556899999999999999887764
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=2.4e-107 Score=866.49 Aligned_cols=514 Identities=65% Similarity=1.141 Sum_probs=424.8
Q ss_pred cCCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccC
Q 009149 24 AEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTT 103 (542)
Q Consensus 24 ~~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q 103 (542)
..+.+++|+|+|++...++||+.+.+++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||++++|
T Consensus 12 ~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tq 91 (536)
T PLN02792 12 KADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTT 91 (536)
T ss_pred hcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCc
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred CCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhcc
Q 009149 104 CPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDK 183 (542)
Q Consensus 104 ~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~ 183 (542)
|||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.+++..++|++++|+||++.....+...++.
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~~ 171 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILDG 171 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhhc
Confidence 99999999999999877899999999999999999999999998655555666668899999999999887666555544
Q ss_pred CCCC-CCCCeEEEcCCCC--CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceE
Q 009149 184 GKKL-PLPDGILINGRGS--GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSY 260 (542)
Q Consensus 184 ~~~~-~~~~~~liNG~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~ 260 (542)
+... ..+|.+||||++. .+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|+|||||
T Consensus 172 g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRy 251 (536)
T PLN02792 172 GRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTY 251 (536)
T ss_pred cCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceE
Confidence 4332 3789999999973 367999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCC-ccccccccccccccccCCCCCCCCCCCCCC
Q 009149 261 SVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGP-TVQIDWSLNQARSIRSNLTASGPRPNPQGS 339 (542)
Q Consensus 261 dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~ 339 (542)
||+|++++++|+|||++...+.+....+.|||+|+++..... ..|..| ..+..++......++..+.+..+.+.|+.+
T Consensus 252 dVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~ 330 (536)
T PLN02792 252 SVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGS 330 (536)
T ss_pred EEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCcc
Confidence 999999988899999998755444567889999988653211 122222 223333332323333444433333445443
Q ss_pred CCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCC-CCccccceEEeccCC
Q 009149 340 YHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTG-GGIYQDTAVMGADYR 418 (542)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~g 418 (542)
..+....+++++.+.......++...|+|||.+|..|++|+|++.++.+.++++.+.+++.|.. ......+.++.++.|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~ 410 (536)
T PLN02792 331 YHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHN 410 (536)
T ss_pred cccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCC
Confidence 3333334456655443222224567899999999999999998877777777765434443322 223346888999999
Q ss_pred cEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeech
Q 009149 419 AFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESW 498 (542)
Q Consensus 419 ~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil 498 (542)
++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+||||+.
T Consensus 411 ~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~ 490 (536)
T PLN02792 411 AFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFW 490 (536)
T ss_pred CEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcch
Confidence 99999999988889999999999999999999998866677999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEEEEecCCccccccCCCCCcchhccccCCCC
Q 009149 499 ARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGRH 538 (542)
Q Consensus 499 ~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (542)
.|+..||+++|.|.++.+..+++++||++.+.||..++..
T Consensus 491 ~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~~ 530 (536)
T PLN02792 491 ARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNKN 530 (536)
T ss_pred hccccceEEEEEEccCCCccccccCCCcccCccccccCCC
Confidence 9999999999999988777777899999999999888753
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.7e-106 Score=860.19 Aligned_cols=509 Identities=52% Similarity=0.880 Sum_probs=406.4
Q ss_pred CCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCC
Q 009149 25 EDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTC 104 (542)
Q Consensus 25 ~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~ 104 (542)
.+.+++|+|+|++...++||+.+.+++|||++|||+||+++||+|+|+|+|+|+++|+|||||++|..++++||+++.||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQc 102 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNC 102 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred CCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccC
Q 009149 105 PIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKG 184 (542)
Q Consensus 105 ~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 184 (542)
||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++...+.|+...++|++|+|+||++.+...+...+..+
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 182 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNG 182 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcC
Confidence 99999999999998678999999999999999999999999997766666656688999999999998765554444444
Q ss_pred CCCCCCCeEEEcCCC-CCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEE
Q 009149 185 KKLPLPDGILINGRG-SGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVL 263 (542)
Q Consensus 185 ~~~~~~~~~liNG~~-~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~ 263 (542)
...+.++.+||||++ ..+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|++||||||+
T Consensus 183 ~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvl 262 (545)
T PLN02168 183 HSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVL 262 (545)
T ss_pred CCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEE
Confidence 344578999999997 2378999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCC-c---ceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCc-cccccccccccccccCCCCCCCCCCCCC
Q 009149 264 VTADQPA-R---DYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQG 338 (542)
Q Consensus 264 v~~~~~~-g---~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~~~p~~ 338 (542)
|++++++ | +|||++..........+.|||+|+++......+++..|. .+...+......+...+.+....+.|..
T Consensus 263 v~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~ 342 (545)
T PLN02168 263 VTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQG 342 (545)
T ss_pred EEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcc
Confidence 9998644 4 899999876555567788999998764322122332221 1111111222222223333222233332
Q ss_pred CCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCC
Q 009149 339 SYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYR 418 (542)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g 418 (542)
+........++++.+.......++...|+|||.+|..|++|+|++.++.+++.+..+..+..|.+.....++.++.++.|
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~ 422 (545)
T PLN02168 343 SYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYK 422 (545)
T ss_pred cccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCC
Confidence 22222233455554433211124567899999999999999987665555444443322222322222335788899999
Q ss_pred cEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeech
Q 009149 419 AFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESW 498 (542)
Q Consensus 419 ~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil 498 (542)
++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||+|||||.|+|||||.
T Consensus 423 ~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~ 502 (545)
T PLN02168 423 DFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKA 502 (545)
T ss_pred CEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCc
Confidence 99999999998889999999999999999999998766567999999999999999999999999999999999999999
Q ss_pred hhhhcceEEEEEEec-----CCcc-ccccCCCCCcchhccc
Q 009149 499 ARQYLGQQFYLRVYT-----ASTS-LRDEYPIPKNARLCGK 533 (542)
Q Consensus 499 ~H~d~GMm~~~~V~~-----~~~~-~~~~~~~p~~~~~c~~ 533 (542)
.|++.||++.+.|.+ |++. .+.+++||+++++||.
T Consensus 503 ~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 503 EQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred ccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 999999999999852 3322 2346789999999984
No 7
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=5.8e-99 Score=812.14 Aligned_cols=496 Identities=27% Similarity=0.483 Sum_probs=384.9
Q ss_pred CeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc-CCC
Q 009149 27 PYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT-TCP 105 (542)
Q Consensus 27 ~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~ 105 (542)
.+|+|+|+|+++.+.+||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||++++ |||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHH-HhhccC
Q 009149 106 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLR-AHLDKG 184 (542)
Q Consensus 106 i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~~ 184 (542)
|+||++|+|+|++++++||||||||...|. +||+|+|||+++...+.+++..++|++|+|+||+++...++. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999767899999999998665 599999999997765666666789999999999998765543 233334
Q ss_pred CCCCCCCeEEEcCCCC---------CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEc
Q 009149 185 KKLPLPDGILINGRGS---------GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVH 255 (542)
Q Consensus 185 ~~~~~~~~~liNG~~~---------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~ 255 (542)
....++|.+||||+.. .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.+++|.|+
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 4445779999999963 2479999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCcceEEEEeeeecC----CccceEEEEEecCCCCCCCCCCCCCCc-cccccccccccccccCCCCC
Q 009149 256 VGQSYSVLVTADQPARDYYIVVSSRFTS----TVLTTTGILHYSNSAGPVSGPIPGGPT-VQIDWSLNQARSIRSNLTAS 330 (542)
Q Consensus 256 pgeR~dv~v~~~~~~g~y~i~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~ 330 (542)
+||||||+|++++.+|+|||++....++ ......|||+|+++.....+..+..|. ............+.....+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 320 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQ 320 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccC
Confidence 9999999999998889999999865332 235688999998864321111111111 11000000000111000010
Q ss_pred CCCCCCCCCCCccccccceEEE--eccc--cc------c-cCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCC
Q 009149 331 GPRPNPQGSYHYGLINTTKTIR--LSSS--AG------Q-VNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISD 399 (542)
Q Consensus 331 ~~~~~p~~~~~~~~~~~~~~~~--~~~~--~~------~-~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~ 399 (542)
.+...|. ..++++. +... .. . ......|+|||.+|..+++|+|.+.+.++.+.+..+....
T Consensus 321 ~~~~~p~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~ 392 (539)
T TIGR03389 321 YPANVPV--------TIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPAN 392 (539)
T ss_pred CCCCCCC--------CCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccC
Confidence 0101111 1233322 2111 00 0 1234679999999998899987665554444332211000
Q ss_pred CC-----------CCCCccccceEEeccCCcEEEEEEEcCC---CCCCCeeecCcceEEEeecCCCCCCcC-CCCCCCCC
Q 009149 400 NP-----------TGGGIYQDTAVMGADYRAFIEIVFQNDE---DIIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRD 464 (542)
Q Consensus 400 ~p-----------~~~~~~~~~~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~ 464 (542)
.| .+...+.+++++.++.|++|||+|+|.+ ...||||||||+||||+++.|.|+... ...+|+.|
T Consensus 393 ~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~n 472 (539)
T TIGR03389 393 PPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVD 472 (539)
T ss_pred CCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCC
Confidence 01 0111234678899999999999999975 448999999999999999999887542 23589999
Q ss_pred CCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCccccccCCCCCcchhc
Q 009149 465 AVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLC 531 (542)
Q Consensus 465 p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 531 (542)
|++|||+.|+++||++|||++||||.|+|||||++|+..||++.|.+.+.++..++++++|++++.|
T Consensus 473 P~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999876655455689999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.1e-99 Score=795.70 Aligned_cols=519 Identities=47% Similarity=0.805 Sum_probs=454.4
Q ss_pred eeeeecCCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCC
Q 009149 19 FAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDG 98 (542)
Q Consensus 19 ~~~~~~~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DG 98 (542)
.++..++++.+.|+|++++..+.++|.+++++++||++|||+|+|++||+|+|+|.|+++++++|||||++|..++|+||
T Consensus 19 ~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG 98 (563)
T KOG1263|consen 19 VFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG 98 (563)
T ss_pred HHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Cccc-CCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeecc-chhh
Q 009149 99 VYGT-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKS-NHTD 176 (542)
Q Consensus 99 v~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~-~~~~ 176 (542)
+.+ ||||+||++|+|+|++++|.||||||+|++.|+++|++|+|||.++...+.|++.+++|++|+++||+.+ +...
T Consensus 99 -~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~ 177 (563)
T KOG1263|consen 99 -VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKN 177 (563)
T ss_pred -CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHH
Confidence 555 9999999999999999889999999999999999999999999998877788888999999999999995 7777
Q ss_pred HHHhhccCCCCCC-CCeEEEcCCCCC-----ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeee
Q 009149 177 LRAHLDKGKKLPL-PDGILINGRGSG-----AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYS 250 (542)
Q Consensus 177 ~~~~~~~~~~~~~-~~~~liNG~~~~-----~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~ 250 (542)
+...++.+...+. +|..+|||+... +.++|++||+|||||+|++....+.|+|++|+|+||++||.+++|..++
T Consensus 178 l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~ 257 (563)
T KOG1263|consen 178 LKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTD 257 (563)
T ss_pred HHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeec
Confidence 8777666555444 899999999831 6899999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCceEEEEEEeCCCCcceEEEEeeeecCC----ccceEEEEEecCCCCCCCCCCC---CC-Cccccccccccccc
Q 009149 251 SLDVHVGQSYSVLVTADQPARDYYIVVSSRFTST----VLTTTGILHYSNSAGPVSGPIP---GG-PTVQIDWSLNQARS 322 (542)
Q Consensus 251 ~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p---~~-p~~~~~~~~~~~~~ 322 (542)
+|.|.||||+||+|++++.+++|+|.+.+.+... .....++++|.+...+.+...+ .. |..+..++..+.+.
T Consensus 258 ~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~ 337 (563)
T KOG1263|consen 258 SLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARS 337 (563)
T ss_pred eEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhc
Confidence 9999999999999999998999999999877655 6788999999985443333222 12 23455667777888
Q ss_pred cccCCCCCCCCCCCCCCCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCC-
Q 009149 323 IRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNP- 401 (542)
Q Consensus 323 l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p- 401 (542)
++..++...+.++|++...+......+.+.+.......+++..++||+.+|..|++|.+++.++...+.+..+.+++.|
T Consensus 338 ~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~ 417 (563)
T KOG1263|consen 338 IRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPP 417 (563)
T ss_pred ccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCc
Confidence 8888777778888998877777777777777655434567889999999999999999999877655444444444444
Q ss_pred C--C-CCccccceEEeccCCcEEEEEEEcCC---CCCCCeeecCcceEEEeecCCCCCC--cCCCCCCCCCCCcceEEEe
Q 009149 402 T--G-GGIYQDTAVMGADYRAFIEIVFQNDE---DIIQSYHLNGYQFWVVGMDGGQWTS--ASRNQYNLRDAVARVTVQV 473 (542)
Q Consensus 402 ~--~-~~~~~~~~~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~--~~~~~~~~~~p~~rDTv~v 473 (542)
. . ...+.++.++.++.++.||++|+|.+ ...||||||||.|+||+++.|.|++ +....+|+.||+.||||.|
T Consensus 418 ~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V 497 (563)
T KOG1263|consen 418 IKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQV 497 (563)
T ss_pred cccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEe
Confidence 1 1 12378999999999999999999987 5679999999999999999999998 4446799999999999999
Q ss_pred CCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCccccccCCCCCcchhccccCCCC
Q 009149 474 YPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCGKAAGRH 538 (542)
Q Consensus 474 pp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 538 (542)
+|+||++|||.|||||.|+||||+.+|+..||++.|+|.++++..+.+.+||.+.++||..++.+
T Consensus 498 ~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~~ 562 (563)
T KOG1263|consen 498 PPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGIP 562 (563)
T ss_pred CCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCcC
Confidence 99999999999999999999999999999999999999999998888899999999999988754
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.6e-96 Score=793.02 Aligned_cols=509 Identities=28% Similarity=0.502 Sum_probs=394.1
Q ss_pred HHHHHhhheeeeecCCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCC-CCCceEEecccc
Q 009149 11 ICSLFCSLFAIVSAEDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSL-DEPFLLSWNGIQ 89 (542)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l-~~~~~iH~HG~~ 89 (542)
+|.++.+..+...+++.+++|+|+|++...++||+.+.+|+|||++|||+|++++||+|+|+|+|++ .++++|||||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~ 86 (566)
T PLN02604 7 LFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIR 86 (566)
T ss_pred HHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCC
Confidence 4555566667777888999999999999999999999999999999999999999999999999998 589999999999
Q ss_pred CCCCCCCCCCccc-CCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEe
Q 009149 90 NRRNSFEDGVYGT-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGD 168 (542)
Q Consensus 90 ~~~~~~~DGv~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d 168 (542)
+.+++++||++++ ||+|+||++++|+|++ +++||||||||...|+.+||+|+|||+++.....++ .++.|.+|+|+|
T Consensus 87 ~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~D 164 (566)
T PLN02604 87 QIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTD 164 (566)
T ss_pred CCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeec
Confidence 9998999999998 9999999999999996 789999999999999999999999999876544455 358899999999
Q ss_pred eeccchhhHHHhhccC--CCCCCCCeEEEcCCCC------------------------CceEEEecCcEEEEEEEEcCCC
Q 009149 169 WYKSNHTDLRAHLDKG--KKLPLPDGILINGRGS------------------------GAAFNVEQGKTYRLRISNVGLQ 222 (542)
Q Consensus 169 ~~~~~~~~~~~~~~~~--~~~~~~~~~liNG~~~------------------------~~~~~v~~G~~~rlRliNa~~~ 222 (542)
|++....+....+... ....+++..+|||++. .+.++|++|++|||||||+|..
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~ 244 (566)
T PLN02604 165 WYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTAL 244 (566)
T ss_pred cccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEecccc
Confidence 9998765443322211 1124678999999842 1368999999999999999999
Q ss_pred ceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCc-ceEEEEeeeec-CCccceEEEEEecCCCCC
Q 009149 223 NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPAR-DYYIVVSSRFT-STVLTTTGILHYSNSAGP 300 (542)
Q Consensus 223 ~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g-~y~i~~~~~~~-~~~~~~~ail~y~~~~~~ 300 (542)
+.+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++++| +||||+..... .+...++|||+|++....
T Consensus 245 ~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~ 324 (566)
T PLN02604 245 SALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPR 324 (566)
T ss_pred ceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999998765 89999865432 234678999999864321
Q ss_pred CCCC-C-CCCCc-cccccccccccccccCCCCCCCCCCCCCCCCccccccceEEEecccccccCCeEEEEEcCeeecCCC
Q 009149 301 VSGP-I-PGGPT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPAD 377 (542)
Q Consensus 301 ~~~~-~-p~~p~-~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~ 377 (542)
...+ . +..+. .+......... .+...... +. ......++++.+.......++...|.||+.+|..+.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~----~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~ 394 (566)
T PLN02604 325 RSPPTVPPSGPLWNDVEPRLNQSL----AIKARHGY--IH----PPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPH 394 (566)
T ss_pred CCCCCCCCCCCcccccchhhcchh----cccccccC--cC----CCCCCCCeEEEEeccccccCCeEEEEECcccCCCCC
Confidence 1110 0 10010 00000000000 00000000 00 011224555554322212235678999999999888
Q ss_pred CchhhhcccccCcceecCCCCC-CC----------CCCCccccceEEeccCCcEEEEEEEcCC------CCCCCeeecCc
Q 009149 378 TPLKLADYFKIGGVFRIGSISD-NP----------TGGGIYQDTAVMGADYRAFIEIVFQNDE------DIIQSYHLNGY 440 (542)
Q Consensus 378 ~p~l~~~~~~~~~~~~~~~~~~-~p----------~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~ 440 (542)
.|+|++.+...+++|+.+.... .+ .+...+.+..++.++.|++||++|+|.. ...||||||||
T Consensus 395 ~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH 474 (566)
T PLN02604 395 TPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGH 474 (566)
T ss_pred CchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCC
Confidence 9988776655555554221110 00 0112344677899999999999999985 45799999999
Q ss_pred ceEEEeecCCCCCCcC-CCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCcccc
Q 009149 441 QFWVVGMDGGQWTSAS-RNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLR 519 (542)
Q Consensus 441 ~F~Vl~~~~g~~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~ 519 (542)
+||||++|.|.|+... ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||++.|... ++
T Consensus 475 ~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~~---- 549 (566)
T PLN02604 475 DFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-IE---- 549 (566)
T ss_pred ceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-hh----
Confidence 9999999999887543 34689999999999999999999999999999999999999999999999999764 32
Q ss_pred ccCCCCCcchhccccCC
Q 009149 520 DEYPIPKNARLCGKAAG 536 (542)
Q Consensus 520 ~~~~~p~~~~~c~~~~~ 536 (542)
+.+++|.+++.|+.-||
T Consensus 550 ~~~~~p~~~~~C~~~~~ 566 (566)
T PLN02604 550 RVGKLPSSIMGCGESKG 566 (566)
T ss_pred hccCCCCCcCccccCCC
Confidence 46789999999997664
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=2e-96 Score=791.95 Aligned_cols=495 Identities=27% Similarity=0.498 Sum_probs=378.8
Q ss_pred CCCeEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC-CCceEEeccccCCCCCCCCCCccc-
Q 009149 25 EDPYRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD-EPFLLSWNGIQNRRNSFEDGVYGT- 102 (542)
Q Consensus 25 ~~~~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~- 102 (542)
.+..++|+|+|++..+.+||+++.+++|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||++++
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 357899999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred CCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhc
Q 009149 103 TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLD 182 (542)
Q Consensus 103 q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (542)
||||+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++.....++ .+|+|++|+|+||++.........+.
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~ 177 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHESIPSQELGLS 177 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCChHHHHHhhc
Confidence 9999999999999996 689999999999999999999999999754433233 34899999999999976432221121
Q ss_pred c--CCCCCCCCeEEEcCCCCC--------------------------c-eEEEecCcEEEEEEEEcCCCceEEEEEecce
Q 009149 183 K--GKKLPLPDGILINGRGSG--------------------------A-AFNVEQGKTYRLRISNVGLQNSLNFRIQNHK 233 (542)
Q Consensus 183 ~--~~~~~~~~~~liNG~~~~--------------------------~-~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~ 233 (542)
. .....+++.+||||++.. + .++|++||+|||||||+|+...+.|+|+||+
T Consensus 178 ~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~ 257 (574)
T PLN02191 178 SKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHK 257 (574)
T ss_pred cCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCe
Confidence 1 112246788899987521 2 5999999999999999999999999999999
Q ss_pred eEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCC-cceEEEEeeeecCC-ccceEEEEEecCCCCCCCC--CCCCCC
Q 009149 234 MKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA-RDYYIVVSSRFTST-VLTTTGILHYSNSAGPVSG--PIPGGP 309 (542)
Q Consensus 234 ~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~~~-~~~~~ail~y~~~~~~~~~--~~p~~p 309 (542)
|+|||+||.+++|+++++|.|++||||||+|++++++ ++||||+....... .....|||+|.+......+ +.+..|
T Consensus 258 ~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p 337 (574)
T PLN02191 258 LVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTP 337 (574)
T ss_pred EEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999876 58999997543221 2345799999876532111 111111
Q ss_pred c-cccccccccccccccCCCCCCCCCCCCCCCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhccccc
Q 009149 310 T-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKI 388 (542)
Q Consensus 310 ~-~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~ 388 (542)
. .+.. ........+......+.+. ....++++.+.... ...+..+|.|||.+|..+..|+|++.+...
T Consensus 338 ~~~~~~----~~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~ 406 (574)
T PLN02191 338 RWDDFE----RSKNFSKKIFSAMGSPSPP------KKYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVKYNL 406 (574)
T ss_pred cccccc----hhhcccccccccccCCCCC------CcccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHhhcc
Confidence 0 1100 0011111111000001011 01123444443221 113456899999999989999888766555
Q ss_pred CcceecCCCCC---------CCC-CCCccccceEEeccCCcEEEEEEEcCC------CCCCCeeecCcceEEEeecCCCC
Q 009149 389 GGVFRIGSISD---------NPT-GGGIYQDTAVMGADYRAFIEIVFQNDE------DIIQSYHLNGYQFWVVGMDGGQW 452 (542)
Q Consensus 389 ~~~~~~~~~~~---------~p~-~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g~~ 452 (542)
++.|+.+.... .+. ....+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~ 486 (574)
T PLN02191 407 KLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKF 486 (574)
T ss_pred CcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCC
Confidence 54443321100 000 001234677889999999999999975 67899999999999999999999
Q ss_pred CCcC-CCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCccccccCCCCCcchhc
Q 009149 453 TSAS-RNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLC 531 (542)
Q Consensus 453 ~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 531 (542)
+++. ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||.+.|. +.++ .++.+|++++.|
T Consensus 487 ~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~----~~~~~p~~~~~C 561 (574)
T PLN02191 487 KPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLN----RIGKIPDEALGC 561 (574)
T ss_pred CcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChh----hccCCCcchhhh
Confidence 8632 246899999999999999999999999999999999999999999999999994 3333 355689999999
Q ss_pred cccCCC
Q 009149 532 GKAAGR 537 (542)
Q Consensus 532 ~~~~~~ 537 (542)
+.+++.
T Consensus 562 ~~~~~~ 567 (574)
T PLN02191 562 GLTKQF 567 (574)
T ss_pred hccccc
Confidence 977653
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.1e-95 Score=786.02 Aligned_cols=487 Identities=28% Similarity=0.536 Sum_probs=377.4
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC-CCceEEeccccCCCCCCCCCCccc-CCC
Q 009149 28 YRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD-EPFLLSWNGIQNRRNSFEDGVYGT-TCP 105 (542)
Q Consensus 28 ~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~ 105 (542)
+|+|+|+|+++.+++||+.+.+++|||++|||+|++++||+|+|+|+|+|. ++++|||||+++.+++++||++++ ||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999999999999999999999999999999999999999999999995 889999999999999999999999 999
Q ss_pred CCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccC-
Q 009149 106 IPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKG- 184 (542)
Q Consensus 106 i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~- 184 (542)
|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++..+..++ .+|+|++|+|+||+++...+....+...
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999996 689999999999999999999999999876444455 3488999999999998765433222211
Q ss_pred -CCCCCCCeEEEcCCCCC--------------------------ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEE
Q 009149 185 -KKLPLPDGILINGRGSG--------------------------AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLV 237 (542)
Q Consensus 185 -~~~~~~~~~liNG~~~~--------------------------~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi 237 (542)
....+++.+||||++.. ..++|++|++|||||||+|..+.+.|+|++|+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 11246789999998521 248999999999999999999999999999999999
Q ss_pred eecCcccceeeeeeEEEcCCceEEEEEEeCCCC-cceEEEEeeeec-CCccceEEEEEecCCCCCCCC--CCCCCCc-cc
Q 009149 238 EVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA-RDYYIVVSSRFT-STVLTTTGILHYSNSAGPVSG--PIPGGPT-VQ 312 (542)
Q Consensus 238 a~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~-g~y~i~~~~~~~-~~~~~~~ail~y~~~~~~~~~--~~p~~p~-~~ 312 (542)
|+||.+++|.+++.|.|++||||||+|++++.+ |+||||+..... .+.....|||+|++......+ +.+..|. .+
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~ 318 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDD 318 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccc
Confidence 999999999999999999999999999998766 589999876433 223467899999875432111 1111121 00
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcce
Q 009149 313 IDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVF 392 (542)
Q Consensus 313 ~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~ 392 (542)
.. ........+......+.+. ...++++.+.......++..+|++|+.+|..+..|+|++.++.+.+++
T Consensus 319 ~~----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~ 387 (541)
T TIGR03388 319 FD----RSKAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAF 387 (541)
T ss_pred cc----hhhccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccc
Confidence 00 0000000110000001111 123444433222111234567999999998889998877655444433
Q ss_pred ecCCCC----------CCCCCCCccccceEEeccCCcEEEEEEEcCC------CCCCCeeecCcceEEEeecCCCCCCc-
Q 009149 393 RIGSIS----------DNPTGGGIYQDTAVMGADYRAFIEIVFQNDE------DIIQSYHLNGYQFWVVGMDGGQWTSA- 455 (542)
Q Consensus 393 ~~~~~~----------~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~------~~~HP~HlHG~~F~Vl~~~~g~~~~~- 455 (542)
+.+... ..+.+...+.++.++.++.|++||++|+|.+ ...||||||||+||||+++.|.|+.+
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~ 467 (541)
T TIGR03388 388 DQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGV 467 (541)
T ss_pred cCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCccc
Confidence 321100 0011122345678899999999999999974 45799999999999999999888754
Q ss_pred CCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCccccccCCCCCcchhcc
Q 009149 456 SRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTASTSLRDEYPIPKNARLCG 532 (542)
Q Consensus 456 ~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 532 (542)
....+|+.||++|||+.|+++||++|||++||||.|+|||||++|+..||++.|... ++ .++.+|+++++||
T Consensus 468 ~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 468 DEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred CcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 234689999999999999999999999999999999999999999999999999654 32 3677999999998
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=3.2e-93 Score=764.68 Aligned_cols=476 Identities=22% Similarity=0.385 Sum_probs=365.3
Q ss_pred EEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC-CCceEEeccccCCCCCCCCCCccc-CCCC
Q 009149 29 RFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD-EPFLLSWNGIQNRRNSFEDGVYGT-TCPI 106 (542)
Q Consensus 29 ~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~iH~HG~~~~~~~~~DGv~~~-q~~i 106 (542)
-.|+|+|++..+++||+.+.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|..++++||+|++ ||||
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 46899999999999999999999999999999999999999999999996 899999999999999999999999 9999
Q ss_pred CCCCeEEEEEEEC-CCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccC-
Q 009149 107 PPGKNFTYILQVK-DQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKG- 184 (542)
Q Consensus 107 ~pG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~- 184 (542)
+||++|+|+|+++ +++||||||||.+.|+. ||+|+|||+++...+.. +|+|++|+|+||+++...++...+...
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~~~~---~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 164 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPPPYK---YDDERILLVSDFFSATDEEIEQGLLSTP 164 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCccCCC---ccCcEEEEEeCCCCCCHHHHHhhhhccC
Confidence 9999999999974 58999999999999987 59999999986543333 488999999999999877654433222
Q ss_pred -CCCCCCCeEEEcCCCC---------------CceEEEecCcEEEEEEEEcCCCceEEEEEecce-eEEEeecCccccee
Q 009149 185 -KKLPLPDGILINGRGS---------------GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHK-MKLVEVEGTHTLQT 247 (542)
Q Consensus 185 -~~~~~~~~~liNG~~~---------------~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~p~ 247 (542)
....+++.+||||+.. .+.++|++||+|||||||+|..+.+.|+|++|+ |+|||+||.+++|+
T Consensus 165 ~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 165 FTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred CccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 1234578999999951 267999999999999999999999999999999 99999999999999
Q ss_pred eeeeEEEcCCceEEEEEEeCCC-------CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccc
Q 009149 248 TYSSLDVHVGQSYSVLVTADQP-------ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQA 320 (542)
Q Consensus 248 ~~~~l~l~pgeR~dv~v~~~~~-------~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~ 320 (542)
.+++|.|++||||||+|++++. +|+||||+.....++.....|||+|+++.....+..|..+..........+
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~ 324 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDW 324 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhh
Confidence 9999999999999999999864 489999998654445566889999986543221111111110000000011
Q ss_pred cccccCCCCCCCCCCCCCCCCccccccceEEEecccccc--cCCeEEEEEcCeeecC--CCCchhhhcccccCcceecCC
Q 009149 321 RSIRSNLTASGPRPNPQGSYHYGLINTTKTIRLSSSAGQ--VNGKQRYAINSVSFIP--ADTPLKLADYFKIGGVFRIGS 396 (542)
Q Consensus 321 ~~l~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iNg~~f~~--~~~p~l~~~~~~~~~~~~~~~ 396 (542)
.+ ..+.+......+. ++ ....+++++.+...... .++..+|+|||.+|.. +++|+|...+.... .....
T Consensus 325 ~~--~~l~pl~~~~~~~--~~-~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~--~~~~~ 397 (538)
T TIGR03390 325 LE--YELEPLSEENNQD--FP-TLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGL--PATPN 397 (538)
T ss_pred hh--eeeEecCccccCC--CC-CCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCC--CcCCC
Confidence 11 1122111100000 00 01235666665554321 2456889999999985 68898776543210 00000
Q ss_pred CCCCCCCCCccccceEEeccCCcEEEEEEEcCC--------CCCCCeeecCcceEEEeecCCCCCCcC-CCCCCCCCCCc
Q 009149 397 ISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDE--------DIIQSYHLNGYQFWVVGMDGGQWTSAS-RNQYNLRDAVA 467 (542)
Q Consensus 397 ~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~--------~~~HP~HlHG~~F~Vl~~~~g~~~~~~-~~~~~~~~p~~ 467 (542)
.............+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++.||++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~r 477 (538)
T TIGR03390 398 YTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVL 477 (538)
T ss_pred cccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCe
Confidence 000000001233566788999999999999974 578999999999999999999998643 23578889999
Q ss_pred ceEEEeC----------CCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCC
Q 009149 468 RVTVQVY----------PKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTAS 515 (542)
Q Consensus 468 rDTv~vp----------p~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~ 515 (542)
|||+.|+ +++|++|||++||||.|+|||||.+|...||++.|.|.+.+
T Consensus 478 RDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~ 535 (538)
T TIGR03390 478 RDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAE 535 (538)
T ss_pred ecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChH
Confidence 9999996 78999999999999999999999999999999999997654
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=5.3e-80 Score=661.35 Aligned_cols=427 Identities=21% Similarity=0.277 Sum_probs=322.1
Q ss_pred eEEEEEEEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc-CCCC
Q 009149 28 YRFFNWNVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT-TCPI 106 (542)
Q Consensus 28 ~~~~~l~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i 106 (542)
.++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+|++ ||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCccccccc
Confidence 3799999999999999999999999999999999999999999999999999999999999765 579999999 9999
Q ss_pred CCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhc----
Q 009149 107 PPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLD---- 182 (542)
Q Consensus 107 ~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~---- 182 (542)
+||++|+|+|++ .++||||||||...|+++||+|+|||+++..++..+ |+|++|+|+||++.+..++...+.
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~---D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRA---DREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCC---CceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999997 689999999999999999999999999865444444 899999999999865443321110
Q ss_pred ------------------cCC---------CC-------------CCCCeEEEcCCCC--CceEEEecCcEEEEEEEEcC
Q 009149 183 ------------------KGK---------KL-------------PLPDGILINGRGS--GAAFNVEQGKTYRLRISNVG 220 (542)
Q Consensus 183 ------------------~~~---------~~-------------~~~~~~liNG~~~--~~~~~v~~G~~~rlRliNa~ 220 (542)
.+. .. .....+||||+.. .+++.+++|++|||||||+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas 278 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGS 278 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecC
Confidence 000 00 0112489999973 35699999999999999999
Q ss_pred CCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeeeecCCccceEEEEEecCCCCC
Q 009149 221 LQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSAGP 300 (542)
Q Consensus 221 ~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~ 300 (542)
+.+.+.|+|+||+|+||++||.+++|+.++.+.|+|||||||+|+.+ ..|.|+|.+.... ....+.++|++.+....
T Consensus 279 ~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~--~~~~~~~~l~~~~~~~~ 355 (587)
T TIGR01480 279 AMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSD--RTGYARGTLAVRLGLTA 355 (587)
T ss_pred CCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecC--CCceEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999987 5689999987542 23457778888654211
Q ss_pred CCCCCCCCCc---ccccc-cc--cc-cccccc------C---------------C--C--CCCC------------CCCC
Q 009149 301 VSGPIPGGPT---VQIDW-SL--NQ-ARSIRS------N---------------L--T--ASGP------------RPNP 336 (542)
Q Consensus 301 ~~~~~p~~p~---~~~~~-~~--~~-~~~l~~------~---------------l--~--~~~~------------~~~p 336 (542)
..++++..|. .+... .. .. ...+.. . + . ...+ ...|
T Consensus 356 ~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (587)
T TIGR01480 356 PVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMP 435 (587)
T ss_pred CCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCc
Confidence 1111211110 01000 00 00 000000 0 0 0 0000 0000
Q ss_pred C---------------CCCC----------ccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcc
Q 009149 337 Q---------------GSYH----------YGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGV 391 (542)
Q Consensus 337 ~---------------~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~ 391 (542)
. +... ......+|++.+..... .....|+|||+.|.. ..|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~--m~~~~wtiNG~~~~~-~~p------------ 500 (587)
T TIGR01480 436 MDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN--MERFAWSFDGEAFGL-KTP------------ 500 (587)
T ss_pred ccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC--CceeEEEECCccCCC-CCc------------
Confidence 0 0000 00112445554433210 235679999988642 111
Q ss_pred eecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEE
Q 009149 392 FRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTV 471 (542)
Q Consensus 392 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv 471 (542)
+.++.|++|+|.|.|.+.+.||||||||.|+|+..++ . .+.+|||+
T Consensus 501 ---------------------l~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~------------~~~~~dTv 546 (587)
T TIGR01480 501 ---------------------LRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-E------------FQVRKHTV 546 (587)
T ss_pred ---------------------eEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-c------------ccccCCce
Confidence 4689999999999999999999999999999987643 1 13578999
Q ss_pred EeCCCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEe
Q 009149 472 QVYPKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 472 ~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~ 512 (542)
.|+|++++.++|.+||||.|+||||+++|++.|||..|+|.
T Consensus 547 ~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 547 DVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 99999999999999999999999999999999999999883
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1e-79 Score=654.70 Aligned_cols=436 Identities=17% Similarity=0.191 Sum_probs=305.6
Q ss_pred eEEEEEEEEEEEecCCCe-eeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCC
Q 009149 28 YRFFNWNVTYGDIYPLGV-RQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPI 106 (542)
Q Consensus 28 ~~~~~l~i~~~~~~~~G~-~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i 106 (542)
...|+|++++....++|. ...+|+|||++|||+||+++||+|+|+++|+|+++|+|||||+++.+ .+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCCCC--CCCC
Confidence 446999999999998654 45699999999999999999999999999999999999999998874 599998 8999
Q ss_pred CCCCeEEEEEEECCCceeeeEecch----hhhhhcceeeEEEEeCCCCCCCCCC--CCCCCeEEEEEeeeccchhhHHHh
Q 009149 107 PPGKNFTYILQVKDQIGSFYYFPSL----AFHKAAGGFGGIRILSRPRIPVPFP--DPAGDYTVLIGDWYKSNHTDLRAH 180 (542)
Q Consensus 107 ~pG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~ 180 (542)
.||++|+|+|++.+++||||||||. ..|+++||+|+|||+++.+...+++ ...+|++|+|+||+++.++++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 9999999999975568999999996 6999999999999999765433332 234689999999999876654321
Q ss_pred hcc--CCCCCCCCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEE-ecceeEEEeecCccc-ceeeeeeEEEcC
Q 009149 181 LDK--GKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRI-QNHKMKLVEVEGTHT-LQTTYSSLDVHV 256 (542)
Q Consensus 181 ~~~--~~~~~~~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~l~l~p 256 (542)
.+. ......++.+||||+.. |.+.++ +++|||||||+|+.+.|.|++ ++|+|+|||.||+++ +|..+++|.|+|
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~-p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~lap 278 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY-PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPILM 278 (523)
T ss_pred ccccccccCccCCeEEECCccc-ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEECc
Confidence 111 12234679999999987 888885 579999999999999999998 899999999999986 799999999999
Q ss_pred CceEEEEEEeCCCCcceEEEEeeeecCC-----ccceEEEEEecCCCCCCCCCCCCCCc--ccccc-ccccccccccCCC
Q 009149 257 GQSYSVLVTADQPARDYYIVVSSRFTST-----VLTTTGILHYSNSAGPVSGPIPGGPT--VQIDW-SLNQARSIRSNLT 328 (542)
Q Consensus 257 geR~dv~v~~~~~~g~y~i~~~~~~~~~-----~~~~~ail~y~~~~~~~~~~~p~~p~--~~~~~-~~~~~~~l~~~l~ 328 (542)
||||||+|+++ +.+.|.+.+....... ......++++.........++|.... ..... .....+.+.+.+.
T Consensus 279 GeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~ 357 (523)
T PRK10965 279 GERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMD 357 (523)
T ss_pred cceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeec
Confidence 99999999998 4678998876432110 11123455554332111111211100 00000 0000011100000
Q ss_pred CCCCC----CC-CCCCC-CccccccceEE-Eeccc----ccc---cCCe-----EEEEEcCeeecCCCCchhhhcccccC
Q 009149 329 ASGPR----PN-PQGSY-HYGLINTTKTI-RLSSS----AGQ---VNGK-----QRYAINSVSFIPADTPLKLADYFKIG 389 (542)
Q Consensus 329 ~~~~~----~~-p~~~~-~~~~~~~~~~~-~~~~~----~~~---~~~~-----~~~~iNg~~f~~~~~p~l~~~~~~~~ 389 (542)
..... .. ..... ........... .+... +.. ..+. ..|+|||++|... .|
T Consensus 358 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~~-~~---------- 426 (523)
T PRK10965 358 PRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDMN-KP---------- 426 (523)
T ss_pred cccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCCC-Cc----------
Confidence 00000 00 00000 00000000000 00000 000 0001 1258999887532 11
Q ss_pred cceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcCCC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcc
Q 009149 390 GVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVAR 468 (542)
Q Consensus 390 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~r 468 (542)
.+.++.|++++|+|.|.+. +.|||||||++||||++++.... ..++.||
T Consensus 427 ----------------------~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~--------~~~~~wk 476 (523)
T PRK10965 427 ----------------------MFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPA--------AHRAGWK 476 (523)
T ss_pred ----------------------ceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCC--------ccccccc
Confidence 1468999999999999984 68999999999999999764221 2346899
Q ss_pred eEEEeCCCCEEEEEEEec----CceeeEEEeechhhhhcceEEEEEEe
Q 009149 469 VTVQVYPKSWSAIYIALD----NVGMWNLRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 469 DTv~vpp~g~~~irf~ad----npG~w~~HCHil~H~d~GMm~~~~V~ 512 (542)
|||.|++ +.++|+++++ ++|.||||||||+|||.|||..|+|.
T Consensus 477 DTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 477 DTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred cEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 9999988 7777777665 56799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.8e-77 Score=632.40 Aligned_cols=399 Identities=17% Similarity=0.197 Sum_probs=298.0
Q ss_pred EEEEEEEEEEecCC-CeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCC
Q 009149 30 FFNWNVTYGDIYPL-GVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPP 108 (542)
Q Consensus 30 ~~~l~i~~~~~~~~-G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~p 108 (542)
.++|+++...+.++ |..+.+|+|||++||||||+++||+|+|+++|+|+++|++||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37899999998877 56789999999999999999999999999999999999999999998764 577775 88999
Q ss_pred CCeEEEEEEECCCceeeeEecchh----hhhhcceeeEEEEeCCCCCCCCCCC--CCCCeEEEEEeeeccchhhHHHhhc
Q 009149 109 GKNFTYILQVKDQIGSFYYFPSLA----FHKAAGGFGGIRILSRPRIPVPFPD--PAGDYTVLIGDWYKSNHTDLRAHLD 182 (542)
Q Consensus 109 G~~~~Y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (542)
|++|+|+|++.+++||||||||.+ .|+++||+|+|||+++.+...+++. ..+|++|+|+||+++....... ..
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-~~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-NE 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc-cc
Confidence 999999999766799999999964 6999999999999997654333321 3459999999999986554221 11
Q ss_pred cCCCCCCCCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEE-ecceeEEEeecCccc-ceeeeeeEEEcCCceE
Q 009149 183 KGKKLPLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRI-QNHKMKLVEVEGTHT-LQTTYSSLDVHVGQSY 260 (542)
Q Consensus 183 ~~~~~~~~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~~~l~l~pgeR~ 260 (542)
.......++.+||||+.. |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|..+++|.|+|||||
T Consensus 202 ~~~~g~~gd~~lvNG~~~-p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGeR~ 279 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS-PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGERR 279 (471)
T ss_pred cccCCccCCeeEECCccC-CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCCeE
Confidence 122345679999999998 89999874 8999999999999999999 899999999997776 7999999999999999
Q ss_pred EEEEEeCCCCcceEEEEeeeecCC-cc----------ceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCC
Q 009149 261 SVLVTADQPARDYYIVVSSRFTST-VL----------TTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTA 329 (542)
Q Consensus 261 dv~v~~~~~~g~y~i~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~ 329 (542)
||+|++++ .+.+.+++....... .. ....+++...... .+..+ ..++..+..
T Consensus 280 dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-----------~~~p~~l~~ 342 (471)
T PRK10883 280 EILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL-----LPLVT-----------DNLPMRLLP 342 (471)
T ss_pred EEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccc-----ccCCC-----------CcCChhhcC
Confidence 99999974 556766653210000 00 0011122211100 00000 000001110
Q ss_pred CCCCCCCCCCCCccccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCcccc
Q 009149 330 SGPRPNPQGSYHYGLINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQD 409 (542)
Q Consensus 330 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 409 (542)
.. + + .......+++.+.. ..|.|||+.|.+...+
T Consensus 343 ~~--~-~-----~~~~~~~~~~~l~~--------~~~~INg~~~~~~~~~------------------------------ 376 (471)
T PRK10883 343 DE--I-M-----EGSPIRSREISLGD--------DLPGINGALWDMNRID------------------------------ 376 (471)
T ss_pred CC--C-C-----CCCCcceEEEEecC--------CcCccCCcccCCCcce------------------------------
Confidence 00 0 0 00111234444432 1478999998542211
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
+.++.|++++|+|.|. +.|||||||+.|||+++++.... ..+..|||||.|+ +.++|+++++++|
T Consensus 377 ---~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~~~~ 441 (471)
T PRK10883 377 ---VTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFGQPS 441 (471)
T ss_pred ---eecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEecCCC
Confidence 3579999999999886 68999999999999999753211 1234799999996 4699999999887
Q ss_pred ----eeEEEeechhhhhcceEEEEEEec
Q 009149 490 ----MWNLRSESWARQYLGQQFYLRVYT 513 (542)
Q Consensus 490 ----~w~~HCHil~H~d~GMm~~~~V~~ 513 (542)
.||||||||+|||.|||..|+|..
T Consensus 442 ~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 442 WAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred CCCCcEEeecccccccccCCccCeEEec
Confidence 899999999999999999999965
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1e-61 Score=515.06 Aligned_cols=412 Identities=21% Similarity=0.224 Sum_probs=297.5
Q ss_pred EEEEEEEEEEe-cCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc-CCCCC
Q 009149 30 FFNWNVTYGDI-YPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT-TCPIP 107 (542)
Q Consensus 30 ~~~l~i~~~~~-~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~ 107 (542)
+..+....... ..++.....|.|||++|||+||+++||+|+|+++|.|.+.|++||||+.++ +.+||++.. |+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCC
Confidence 33333433333 456778889999999999999999999999999999987799999998665 689999888 99999
Q ss_pred CCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccCCCC
Q 009149 108 PGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKL 187 (542)
Q Consensus 108 pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 187 (542)
||++++|.|+. +++||||||+|.+.|+++||+|++||++....+..+ |.+..+...+|........... ......
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~~~~~~~~-~~~~~~ 186 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDEDGTDLYQE-GPAMGG 186 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCCCCccccC-CccccC
Confidence 99999999996 567799999999999999999999999976554444 6666677777765544333221 122234
Q ss_pred CCCCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeC
Q 009149 188 PLPDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD 267 (542)
Q Consensus 188 ~~~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~ 267 (542)
..++..+|||+.. +.+.++. ++|||||+|+++.+.+.+++.+++|+||++||.++++..++.+.|+||||+||+++++
T Consensus 187 ~~g~~~~vnG~~~-p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~~ 264 (451)
T COG2132 187 FPGDTLLVNGAIL-PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDMN 264 (451)
T ss_pred CCCCeEEECCCcc-ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEcC
Confidence 5678999999775 5555555 5699999999988999999999999999999999999899999999999999999998
Q ss_pred CCCcceEEEEeeeecCCccceEEEEEecCCCCCC---CCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccc
Q 009149 268 QPARDYYIVVSSRFTSTVLTTTGILHYSNSAGPV---SGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGL 344 (542)
Q Consensus 268 ~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~---~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~ 344 (542)
..+.+.+.+... .......+........... .......+..+. + ...... .+...... + .
T Consensus 265 -~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~-~~~~~~---~~~~~~~~--~-------~ 327 (451)
T COG2132 265 -DGGAVTLTALGE--DMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDM-A-DHAPVG---LLVTILVE--P-------G 327 (451)
T ss_pred -CCCeEEEEeccc--cCCceeeeeeccccccccccccccccccCCCcch-h-hccccc---cchhhcCC--C-------c
Confidence 477888888651 1111122222211111000 000000010000 0 000000 00000000 0 0
Q ss_pred cccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEE
Q 009149 345 INTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIV 424 (542)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~ 424 (542)
......+.+... .....|.+|++.|.+. ...+.++.|++++|+
T Consensus 328 ~~~~~~~~l~~~----~~~~~~~~n~~~~~~~---------------------------------~~~~~~~~G~~~~~~ 370 (451)
T COG2132 328 PNRDTDFHLIGG----IGGYVWAINGKAFDDN---------------------------------RVTLIAKAGTRERWV 370 (451)
T ss_pred ccccccchhhcc----cccccccccCccCCCC---------------------------------cCceeecCCCEEEEE
Confidence 001111222111 2235588888777531 122568999999999
Q ss_pred EEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeEEEeechhhhhcc
Q 009149 425 FQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQYLG 504 (542)
Q Consensus 425 i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~G 504 (542)
|.|.+.+.|||||||+.|+|++.+. . .....+.||||+.+.+++.++|+|.+++||.||||||+++|++.|
T Consensus 371 i~n~~~~~HP~HlHg~~F~v~~~~~-~--------~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~G 441 (451)
T COG2132 371 LTNDTPMPHPFHLHGHFFQVLSGDA-P--------APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNG 441 (451)
T ss_pred EECCCCCccCeEEcCceEEEEecCC-C--------cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcC
Confidence 9999999999999999999999971 1 223456899999999999999999999999999999999999999
Q ss_pred eEEEEEEec
Q 009149 505 QQFYLRVYT 513 (542)
Q Consensus 505 Mm~~~~V~~ 513 (542)
||..+.|..
T Consensus 442 m~~~~~v~~ 450 (451)
T COG2132 442 MMGQFGVVP 450 (451)
T ss_pred CeeEEEecC
Confidence 999998853
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=9.7e-49 Score=392.89 Aligned_cols=265 Identities=15% Similarity=0.181 Sum_probs=220.9
Q ss_pred eeecCCCeEEEEEEEEEEEec-CCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC--CCceEEeccccCCCCCCCC
Q 009149 21 IVSAEDPYRFFNWNVTYGDIY-PLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD--EPFLLSWNGIQNRRNSFED 97 (542)
Q Consensus 21 ~~~~~~~~~~~~l~i~~~~~~-~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~--~~~~iH~HG~~~~~~~~~D 97 (542)
+-++...+++|+|++++..+. .+|..+.+|+|||++|||+||+++||+|+|+|+|++. ..+++||||. ..+|
T Consensus 20 ~~~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~d 94 (311)
T TIGR02376 20 IDRSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGAL 94 (311)
T ss_pred cccCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccC
Confidence 445677889999999999988 5799999999999999999999999999999999985 5789999996 2478
Q ss_pred CCccc-CCCCCCCCeEEEEEEECCCceeeeEecc----hhhhhhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeecc
Q 009149 98 GVYGT-TCPIPPGKNFTYILQVKDQIGSFYYFPS----LAFHKAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKS 172 (542)
Q Consensus 98 Gv~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~ 172 (542)
|++.+ | |.||++++|+|++ +++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++
T Consensus 95 g~~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~ 167 (311)
T TIGR02376 95 GGAALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTP 167 (311)
T ss_pred CCCccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecc
Confidence 98776 6 9999999999996 68999999999 4579999999999999864321 3488999999999987
Q ss_pred chhhHHH-hhcc--CCCCCCCCeEEEcCCCC--CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCccccee
Q 009149 173 NHTDLRA-HLDK--GKKLPLPDGILINGRGS--GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQT 247 (542)
Q Consensus 173 ~~~~~~~-~~~~--~~~~~~~~~~liNG~~~--~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~ 247 (542)
....... +... ......++.++|||+.. .+.+++++|+++||||+|++..+.+.|+++++.+++|+.||.++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~ 247 (311)
T TIGR02376 168 KDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPP 247 (311)
T ss_pred ccccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCC
Confidence 5432111 0000 01224678999999952 25689999999999999999999999999999999999999999864
Q ss_pred e--eeeEEEcCCceEEEEEEeCCCCcceEEEEeeeecCCccceEEEEEecCCC
Q 009149 248 T--YSSLDVHVGQSYSVLVTADQPARDYYIVVSSRFTSTVLTTTGILHYSNSA 298 (542)
Q Consensus 248 ~--~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~~~~~~~~~~ail~y~~~~ 298 (542)
. ++++.|+||||+||+|+++ ++|.|+++++...........++|.|++..
T Consensus 248 ~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 248 NRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 4 8999999999999999999 589999999865433234578999998765
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=3.2e-36 Score=258.60 Aligned_cols=115 Identities=35% Similarity=0.644 Sum_probs=107.6
Q ss_pred EEEEEEecCCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc-CCCCCCCCeE
Q 009149 34 NVTYGDIYPLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT-TCPIPPGKNF 112 (542)
Q Consensus 34 ~i~~~~~~~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG~~~ 112 (542)
+|++..+.++|..+++|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++...+++||++++ ||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 478899999988899999999999999999999999999999999999999999999888889999998 9999999999
Q ss_pred EEEEEECCCceeeeEecchhhhhhcceeeEEEEeCC
Q 009149 113 TYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSR 148 (542)
Q Consensus 113 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (542)
+|+|++++++||||||||...|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999998666999999999988888999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=3.8e-30 Score=229.70 Aligned_cols=108 Identities=29% Similarity=0.485 Sum_probs=98.8
Q ss_pred ccccceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEe
Q 009149 406 IYQDTAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIAL 485 (542)
Q Consensus 406 ~~~~~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~a 485 (542)
.+.+..++.++.|++|+|+|+|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 45678889999999999999999999999999999999999998776655556688899999999999999999999999
Q ss_pred cCceeeEEEeechhhhhcceEEEEEEec
Q 009149 486 DNVGMWNLRSESWARQYLGQQFYLRVYT 513 (542)
Q Consensus 486 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 513 (542)
+|||.|+||||+++|++.|||+.|.|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999964
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=2.2e-26 Score=209.95 Aligned_cols=138 Identities=36% Similarity=0.651 Sum_probs=115.2
Q ss_pred CCeEEEEEeeeccchhhHHH-hhccC----CCCCCCCeEEEcCCCC------------CceEEEecCcEEEEEEEEcCCC
Q 009149 160 GDYTVLIGDWYKSNHTDLRA-HLDKG----KKLPLPDGILINGRGS------------GAAFNVEQGKTYRLRISNVGLQ 222 (542)
Q Consensus 160 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~------------~~~~~v~~G~~~rlRliNa~~~ 222 (542)
+|++|+++||+++....+.. .+..+ ...++++++||||++. .+.+.+++|++|||||||+|+.
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~ 80 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGAS 80 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCC
Confidence 37899999999987766544 32221 2367899999999742 4799999999999999999999
Q ss_pred ceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee----ecCCccceEEEEEecCC
Q 009149 223 NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR----FTSTVLTTTGILHYSNS 297 (542)
Q Consensus 223 ~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~----~~~~~~~~~ail~y~~~ 297 (542)
..+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++|.|+|++... .......+.|+|+|+++
T Consensus 81 ~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 81 TSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp -BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred eeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 9999999999999999999999999999999999999999999997799999999622 12335678999999863
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.4e-18 Score=154.88 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=81.4
Q ss_pred CCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC---CCceEEeccccCCCCCCCCCCccc-CCCCCCC---C-e--
Q 009149 42 PLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD---EPFLLSWNGIQNRRNSFEDGVYGT-TCPIPPG---K-N-- 111 (542)
Q Consensus 42 ~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~---~~~~iH~HG~~~~~~~~~DGv~~~-q~~i~pG---~-~-- 111 (542)
..+.....+.++| .++|+|++++||+|+|+++|.++ ....||+||......+.+||++.+ |++|.|+ + .
T Consensus 36 ~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 3456666778888 56999999999999999999964 345677777655544569999988 9998884 1 1
Q ss_pred EEEEEEECCCceeeeEecchhhhhhcceeeEEEEe
Q 009149 112 FTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRIL 146 (542)
Q Consensus 112 ~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (542)
.++.|++ .++||||||||...|..+||+|.|||+
T Consensus 115 ~~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3445553 379999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.72 E-value=7.7e-16 Score=155.02 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=158.8
Q ss_pred CCeEEEcCCCCCceEEEecCcEEEEEEEEcCCC-ceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCC
Q 009149 190 PDGILINGRGSGAAFNVEQGKTYRLRISNVGLQ-NSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 190 ~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
.+.+++||+...|.|++++|++++++|.|.... ..+.+++|++. +.||... ...|.||+++.+.++++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~- 115 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT- 115 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC-
Confidence 468899999877999999999999999998642 46788888864 4566431 22389999999999987
Q ss_pred CCcceEEEEeeee--cCC-ccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCcccc
Q 009149 269 PARDYYIVVSSRF--TST-VLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLI 345 (542)
Q Consensus 269 ~~g~y~i~~~~~~--~~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~ 345 (542)
.+|.||++|+... ..+ .....+.|.++.... .+. . +..+.+ ...+ +.+...... ... +
T Consensus 116 ~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~~-~--d~e~~l-~l~d--~~~~~~~~~---~~~--~--- 176 (311)
T TIGR02376 116 RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LPE-Y--DKEYYI-GESD--LYTPKDEGE---GGA--Y--- 176 (311)
T ss_pred CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----CcC-c--ceeEEE-eeee--Eeccccccc---ccc--c---
Confidence 6999999999532 112 122334455543211 110 1 101000 0011 111000000 000 0
Q ss_pred ccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEE
Q 009149 346 NTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVF 425 (542)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i 425 (542)
...... +. ......++|||+.+... | .+.++.|++++|.|
T Consensus 177 ----~~~~~~-~~-~~~~~~~~iNG~~~~~~--~--------------------------------~~~v~~G~~~RlRi 216 (311)
T TIGR02376 177 ----EDDVAA-MR-TLTPTHVVFNGAVGALT--G--------------------------------DNALTAGVGERVLF 216 (311)
T ss_pred ----cchHHH-Hh-cCCCCEEEECCccCCCC--C--------------------------------CcccccCCcEEEEE
Confidence 000000 00 01113578999864210 0 13578899999999
Q ss_pred EcCCC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCC-cceEEEeCCCCEEEEEEEecCceeeEEEeechhhh-h
Q 009149 426 QNDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAV-ARVTVQVYPKSWSAIYIALDNVGMWNLRSESWARQ-Y 502 (542)
Q Consensus 426 ~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~-~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~-d 502 (542)
.|.+. ..+.||++|++|.++..++....+ +. ..||+.|.||+.+.|.++++.||.|++|||...|. .
T Consensus 217 iNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~ 286 (311)
T TIGR02376 217 VHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFE 286 (311)
T ss_pred EcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHh
Confidence 99874 679999999999999996543221 12 36999999999999999999999999999999887 6
Q ss_pred cceEEEEEEec
Q 009149 503 LGQQFYLRVYT 513 (542)
Q Consensus 503 ~GMm~~~~V~~ 513 (542)
.||++.++|..
T Consensus 287 ~g~~~~i~~~g 297 (311)
T TIGR02376 287 KGAAAQVKVEG 297 (311)
T ss_pred CCCEEEEEECC
Confidence 79999998843
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.65 E-value=5.1e-16 Score=167.71 Aligned_cols=100 Identities=16% Similarity=0.272 Sum_probs=86.1
Q ss_pred eeeEEEEEcCCCccc--eEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcc--c-CCCCCCCCeEEEEEEEC
Q 009149 45 VRQRGILINWQFPGP--DIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYG--T-TCPIPPGKNFTYILQVK 119 (542)
Q Consensus 45 ~~~~~~~~Ng~~pgP--~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~--~-q~~i~pG~~~~Y~f~~~ 119 (542)
..+.+|+|||+.+++ .|++++||+|+|++.|.+...+.|||||+..... ..||... - ...|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 457789999998874 7999999999999999999999999999965432 3366532 2 4789999999999995
Q ss_pred CCceeeeEecchhhhhhcceeeEEEEe
Q 009149 120 DQIGSFYYFPSLAFHKAAGGFGGIRIL 146 (542)
Q Consensus 120 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (542)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 789999999999999999999999874
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.48 E-value=2.8e-13 Score=116.61 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=87.4
Q ss_pred HHHHHHHhhheeeeecCCCeEEEEEEEE--EEEe---cCCCeeeEEE-EEcCCCccceEEEecCCEEEEEEEeCCCCCc-
Q 009149 9 ASICSLFCSLFAIVSAEDPYRFFNWNVT--YGDI---YPLGVRQRGI-LINWQFPGPDIHSVTNDNLIINVFNSLDEPF- 81 (542)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~--~~~~---~~~G~~~~~~-~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~- 81 (542)
+++++++..+.....+.+..|+|+++|. +..+ +..|.....+ ++|+++..+.|+|++||+|+++++|..+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~ 84 (135)
T TIGR03096 5 AMFAGFALGLLLMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEG 84 (135)
T ss_pred HHhHHHHHHHhhccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccc
Confidence 4555666666666677888899999999 6555 4678887777 9999999999999999999999999976543
Q ss_pred -eEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh
Q 009149 82 -LLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA 132 (542)
Q Consensus 82 -~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~ 132 (542)
.+++||+ +..|.||++.+|+|+ ++++|+|||||-.+
T Consensus 85 f~i~~~gi--------------s~~I~pGet~TitF~-adKpG~Y~y~C~~H 121 (135)
T TIGR03096 85 FSIDAYGI--------------SEVIKAGETKTISFK-ADKAGAFTIWCQLH 121 (135)
T ss_pred eEECCCCc--------------ceEECCCCeEEEEEE-CCCCEEEEEeCCCC
Confidence 4444432 245899999999999 58999999999876
No 25
>PRK10965 multicopper oxidase; Provisional
Probab=99.30 E-value=3.7e-10 Score=121.48 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=148.1
Q ss_pred EEEEEEEEEEEecCCCe--------------eeEEEEEcCCCccceEEEecCCEEEEEEEeCCC-CCceEEe-ccccCCC
Q 009149 29 RFFNWNVTYGDIYPLGV--------------RQRGILINWQFPGPDIHSVTNDNLIINVFNSLD-EPFLLSW-NGIQNRR 92 (542)
Q Consensus 29 ~~~~l~i~~~~~~~~G~--------------~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~iH~-HG~~~~~ 92 (542)
.++.|.++......+|. ....+++||+. .|.+.+. |.++++|+.|... ....+.+ .|.....
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE
Confidence 35566666655443332 23568999995 8888885 6799999999974 4456665 3432221
Q ss_pred CCCCCCCcc-----c-CCCCCCCCeEEEEEEECCCceeeeEecchhhhhh------cceeeEEEEeCCC---CCCCC---
Q 009149 93 NSFEDGVYG-----T-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKA------AGGFGGIRILSRP---RIPVP--- 154 (542)
Q Consensus 93 ~~~~DGv~~-----~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~------~Gl~G~liV~~~~---~~~~~--- 154 (542)
...||.+. + +..|.||++++..++. .+.|.++...-...+.. +.-+-.+.|.... ....|
T Consensus 258 -Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~~-~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l 335 (523)
T PRK10965 258 -IASDGGLLAEPVKVSELPILMGERFEVLVDT-SDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL 335 (523)
T ss_pred -EEeCCCcccCccEeCeEEECccceEEEEEEc-CCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh
Confidence 46898542 2 4569999999999996 44677776653221111 0011223333211 10111
Q ss_pred --CCC-C------CCCeEEEEEeeec----------cchhhHHH--------hh--------ccC--CCCCCC---CeEE
Q 009149 155 --FPD-P------AGDYTVLIGDWYK----------SNHTDLRA--------HL--------DKG--KKLPLP---DGIL 194 (542)
Q Consensus 155 --~~~-~------~~e~~l~l~d~~~----------~~~~~~~~--------~~--------~~~--~~~~~~---~~~l 194 (542)
... . .+.+.+.+..+.- ........ .+ ..+ ...... ..++
T Consensus 336 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (523)
T PRK10965 336 ASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANK 415 (523)
T ss_pred ccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 0 0112222211100 00000000 00 000 000001 1248
Q ss_pred EcCCCC---CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccce---eeeeeEEEcCCceEEEEEEeCC
Q 009149 195 INGRGS---GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQ---TTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 195 iNG~~~---~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p---~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
|||+.. .+.++++.|++.+|+|+|.+....|.|||||+.|+|++.||.+..+ ..+|+|.+.+ ++.+++++++.
T Consensus 416 ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~ 494 (523)
T PRK10965 416 INGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDH 494 (523)
T ss_pred CCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecC
Confidence 999963 3567899999999999999976678999999999999999998753 4589999976 88999999973
Q ss_pred ---CCcceEEEEeee
Q 009149 269 ---PARDYYIVVSSR 280 (542)
Q Consensus 269 ---~~g~y~i~~~~~ 280 (542)
.+|.|.++|+..
T Consensus 495 ~~~~~g~~~~HCHiL 509 (523)
T PRK10965 495 DAPKEHAYMAHCHLL 509 (523)
T ss_pred CCCCCCCEEEEeCch
Confidence 467999999864
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.28 E-value=1.8e-10 Score=125.09 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=147.2
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEE-eecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLV-EVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..+++||+...|.|+++.|+++++++.|--.. ...+|.||....-- ..||.+ .+..-.|.||+.+...+++.+.
T Consensus 23 ~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~-~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~~ 97 (539)
T TIGR03389 23 SILTVNGKFPGPTLYAREGDTVIVNVTNNVQY-NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITGQ 97 (539)
T ss_pred EEEEECCcccCCEEEEEcCCEEEEEEEeCCCC-CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecCC
Confidence 58999999988999999999999999999875 34666666432111 257754 2333468999999999998657
Q ss_pred CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccce
Q 009149 270 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTK 349 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~ 349 (542)
+|.||.+++..... ....|-|...+... .+.+. +..+.+ +.+.+....... .... ...
T Consensus 98 ~GT~WYHsH~~~~~--~Gl~G~lIV~~~~~---~~~~~-~~~d~e--------~~l~l~Dw~~~~-~~~~-------~~~ 155 (539)
T TIGR03389 98 RGTLWWHAHISWLR--ATVYGAIVILPKPG---VPYPF-PKPDRE--------VPIILGEWWNAD-VEAV-------INQ 155 (539)
T ss_pred CeeEEEecCchhhh--ccceEEEEEcCCCC---CCCCC-CCCCce--------EEEEecccccCC-HHHH-------HHH
Confidence 99999999864221 22344444433211 01111 000000 000111110000 0000 000
Q ss_pred EEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcCC
Q 009149 350 TIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDE 429 (542)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~ 429 (542)
. +.... ...-...+.|||+....... ......++.++.|++++|.|+|.+
T Consensus 156 -~-~~~~~-~~~~~d~~liNG~~~~~~~~---------------------------~~~~~~~i~v~~G~~~RlRlINa~ 205 (539)
T TIGR03389 156 -A-NQTGG-APNVSDAYTINGHPGPLYNC---------------------------SSKDTFKLTVEPGKTYLLRIINAA 205 (539)
T ss_pred -H-HhcCC-CCCccceEEECCCcCCCCCC---------------------------CCCCceEEEECCCCEEEEEEEecc
Confidence 0 00000 00011247899975321000 001234688999999999999997
Q ss_pred -CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ceeeEEEeec
Q 009149 430 -DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLRSES 497 (542)
Q Consensus 430 -~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG~w~~HCHi 497 (542)
...+-|||+||.|+|++.++.. ..|...|++.|.+|+.+.|.++++. +|.|.++-+.
T Consensus 206 ~~~~~~~~idgH~~~VIa~DG~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 206 LNDELFFAIANHTLTVVEVDATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred CCceEEEEECCCeEEEEEeCCcc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 4558999999999999997531 2466789999999999999999976 7998887654
No 27
>PLN02835 oxidoreductase
Probab=99.22 E-value=8.1e-10 Score=119.26 Aligned_cols=225 Identities=15% Similarity=0.117 Sum_probs=138.4
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..++|||+...|.|++++|+++++++.|.-.. ...+|.||..+.- -..||.+. ..-.|.||+.++..++..+.
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~q 122 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQ-PFLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKDQ 122 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCC-CCcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECCC
Confidence 57999999988999999999999999999874 4466666654332 23698642 23479999999999987546
Q ss_pred CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccce
Q 009149 270 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTTK 349 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~~ 349 (542)
+|+||++++.... ......+-|....... .+.|. +..+.+. ...+....... .. ....
T Consensus 123 ~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~-~~~d~e~--------~l~l~Dw~~~~-~~--------~~~~ 180 (539)
T PLN02835 123 IGTFTYFPSTLFH-KAAGGFGAINVYERPR---IPIPF-PLPDGDF--------TLLVGDWYKTS-HK--------TLQQ 180 (539)
T ss_pred CEeEEEEeCccch-hcCcccceeEEeCCCC---CCcCC-CCCCceE--------EEEeeccccCC-HH--------HHHH
Confidence 9999999985321 1112233333322111 01110 0001000 00011000000 00 0000
Q ss_pred EEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcCC
Q 009149 350 TIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQNDE 429 (542)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~~ 429 (542)
. +.... ...-.....|||+.. ..+.++.|++++|+|+|.+
T Consensus 181 ~--~~~g~-~~~~~d~~liNG~~~-------------------------------------~~~~v~~G~~yRlRliNa~ 220 (539)
T PLN02835 181 R--LDSGK-VLPFPDGVLINGQTQ-------------------------------------STFSGDQGKTYMFRISNVG 220 (539)
T ss_pred H--hhcCC-CCCCCceEEEccccC-------------------------------------ceEEECCCCEEEEEEEEcC
Confidence 0 00000 000012356777531 1256899999999999998
Q ss_pred C-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ceeeEEE
Q 009149 430 D-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLR 494 (542)
Q Consensus 430 ~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG~w~~H 494 (542)
. ...-|||.||+|.|++.++... .|...|++.|.+|+++.+.++++. +|.|-++
T Consensus 221 ~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 221 LSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred CCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 4 5799999999999999976422 245679999999999999999965 6876665
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=99.16 E-value=1.4e-09 Score=117.66 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=143.7
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..++|||+...|.|+++.|+++++++.|.... ...+|.||....- -..||.+. ..-.|.||+.+...+++.+.
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~q 120 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKDQ 120 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCCC
Confidence 58999999988999999999999999999864 3456666643322 23788642 34479999999999998546
Q ss_pred CcceEEEEeeeecCCc-cceEEEEEecCCCCCCCCCCCCC-CccccccccccccccccCCCCCCCCCCCCCCCCcccccc
Q 009149 270 ARDYYIVVSSRFTSTV-LTTTGILHYSNSAGPVSGPIPGG-PTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINT 347 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~-~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~ 347 (542)
.|+||.+++.. .|. ....|-|...+... .+.+.. +..+.. ..+....-.. ... .
T Consensus 121 ~GT~WYHsH~~--~Q~~~Gl~G~lII~~~~~---~~~p~~~~d~e~~----------l~l~Dw~~~~--~~~-------~ 176 (552)
T PLN02354 121 IGSYFYYPSTG--MHRAAGGFGGLRVNSRLL---IPVPYADPEDDYT----------VLIGDWYTKS--HTA-------L 176 (552)
T ss_pred CcceEEecCcc--ceecCCccceEEEcCCcC---CCCCCCCcCceEE----------EEeeeeccCC--HHH-------H
Confidence 89999999853 221 22333333332211 011110 101100 0011100000 000 0
Q ss_pred ceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEc
Q 009149 348 TKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQN 427 (542)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 427 (542)
... +.... .........|||+..... ......+.++.|++++|+|+|
T Consensus 177 ~~~--~~~g~-~~~~~d~~liNG~~~~~~------------------------------~~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 177 KKF--LDSGR-TLGRPDGVLINGKSGKGD------------------------------GKDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred HHH--HhcCC-CCCCCCeEEEeCCcCCCC------------------------------CCCceEEEECCCCEEEEEEEe
Confidence 000 00000 001112367888642100 012345789999999999999
Q ss_pred CC-CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ceeeEEEee
Q 009149 428 DE-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLRSE 496 (542)
Q Consensus 428 ~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG~w~~HCH 496 (542)
.+ ....-|||.||.|+|++.++... .|...|++.|.+|+++.+.++++. +|.|-+.-.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 98 45699999999999999975432 344569999999999999999975 788777665
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=99.13 E-value=3.6e-09 Score=114.04 Aligned_cols=219 Identities=11% Similarity=0.090 Sum_probs=135.2
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEE-eecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLV-EVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..+++||+...|.|+++.|+++++++.|.... ...+|.||....-- ..||.+. ..-.|.||+++...+++++.
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~q 119 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTE-PFLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKDQ 119 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCC-CccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCCC
Confidence 57899999988999999999999999999874 44667766543221 2488642 23479999999999999646
Q ss_pred CcceEEEEeeeecCC-ccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 270 ARDYYIVVSSRFTST-VLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
+|+||.+++.. .| .....+.|...+... ...+.+ .+..+.. ..+....... ... ..
T Consensus 120 ~GT~WYHsH~~--~Q~~~GL~G~lII~~~~~-~~~p~~-~~d~e~~----------l~l~Dw~~~~--~~~-------~~ 176 (545)
T PLN02168 120 IGSYFYFPSLL--LQKAAGGYGAIRIYNPEL-VPVPFP-KPDEEYD----------ILIGDWFYAD--HTV-------MR 176 (545)
T ss_pred CceEEEecChh--hhhhCcceeEEEEcCCcc-cCcCcC-cccceee----------EEEEecCCCC--HHH-------HH
Confidence 99999999853 22 122334343333221 000111 0111110 0011100000 000 00
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
. .+..... ........|||+.-. ...+.++.|++++|+|.|.
T Consensus 177 ~--~~~~g~~-~~~~d~~liNG~~~~-----------------------------------~~~~~v~~G~~yRlRiiNa 218 (545)
T PLN02168 177 A--SLDNGHS-LPNPDGILFNGRGPE-----------------------------------ETFFAFEPGKTYRLRISNV 218 (545)
T ss_pred h--hhhcCCC-CCCCCEEEEeccCCC-----------------------------------cceEEeCCCCEEEEEEEec
Confidence 0 0000000 001123567775310 1247789999999999998
Q ss_pred CC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC
Q 009149 429 ED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN 487 (542)
Q Consensus 429 ~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 487 (542)
+. ..+-|+|.||+|+|++.++.. .+|...|++.|.+|+++.+.+++++
T Consensus 219 ~~~~~~~~~IdgH~~tVIa~DG~~-----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 219 GLKTCLNFRIQDHDMLLVETEGTY-----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred cCCceEEEEECCcEEEEEEECCeE-----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 74 469999999999999987532 2345679999999999999999964
No 30
>PRK10883 FtsI repressor; Provisional
Probab=99.12 E-value=2e-09 Score=114.74 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=139.1
Q ss_pred EEEEEEEEEEecCC-----------CeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCC-CCceEEe-ccccCCCCCCC
Q 009149 30 FFNWNVTYGDIYPL-----------GVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLD-EPFLLSW-NGIQNRRNSFE 96 (542)
Q Consensus 30 ~~~l~i~~~~~~~~-----------G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~-~~~~iH~-HG~~~~~~~~~ 96 (542)
++.|.++...+..+ |....++++||+. .|.+.|+.| ++++|+.|... ....+++ .|..... ...
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAG 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEe
Confidence 55666665444322 2334578999995 899999875 89999999985 4567777 5543222 457
Q ss_pred CCC----cc-c-CCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceee------------EEEEeCCCCCCCCCCCC
Q 009149 97 DGV----YG-T-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFG------------GIRILSRPRIPVPFPDP 158 (542)
Q Consensus 97 DGv----~~-~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G------------~liV~~~~~~~~~~~~~ 158 (542)
||- |. + +..|.||++++.-.++ .+.+.+.+++-.......++.+ .+-++...... +.
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 332 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV--- 332 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---
Confidence 854 22 2 4669999999999996 4556777776321111111111 11111110000 00
Q ss_pred CCCeEEEEEeeeccchhhHHHhhccCCCCCCCCeEEEcCCCCC---ceEEEecCcEEEEEEEEcCCCceEEEEEecceeE
Q 009149 159 AGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSG---AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMK 235 (542)
Q Consensus 159 ~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~---~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 235 (542)
....+..+............. .. .....+.++|||+... +.++++.|++++|+|.|.. .|+||||++.|+
T Consensus 333 ~~~~p~~l~~~~~~~~~~~~~-~~---~~l~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~Fq 405 (471)
T PRK10883 333 TDNLPMRLLPDEIMEGSPIRS-RE---ISLGDDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFL 405 (471)
T ss_pred CCcCChhhcCCCCCCCCCcce-EE---EEecCCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCccEE
Confidence 000000000000000000000 00 0001123479999632 2468999999999998863 589999999999
Q ss_pred EEeecCcccce---eeeeeEEEcCCceEEEEEEeCCCCc---ceEEEEeee
Q 009149 236 LVEVEGTHTLQ---TTYSSLDVHVGQSYSVLVTADQPAR---DYYIVVSSR 280 (542)
Q Consensus 236 via~DG~~~~p---~~~~~l~l~pgeR~dv~v~~~~~~g---~y~i~~~~~ 280 (542)
|++.||....+ ...|+|.+. +++.++++|++..+ .|.++|+..
T Consensus 406 Vl~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 406 IRNVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred EEEecCCCCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccc
Confidence 99999986544 347999993 57999999985443 799999965
No 31
>PLN02792 oxidoreductase
Probab=99.11 E-value=3.5e-09 Score=114.08 Aligned_cols=226 Identities=13% Similarity=0.137 Sum_probs=138.7
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEe---ecCcccceeeeeeEEEcCCceEEEEEEeC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVE---VEGTHTLQTTYSSLDVHVGQSYSVLVTAD 267 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via---~DG~~~~p~~~~~l~l~pgeR~dv~v~~~ 267 (542)
..++|||+...|.|++++|+++++++.|-... ...+|.|| +.+.. .||.+. + +-.|.||+.+...++++
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHWHG--l~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~ 107 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLDE-PFLLSWNG--VHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVK 107 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCCC-CcCEeCCC--cccCCCCccCCCCC----C-cCccCCCCcEEEEEEeC
Confidence 58999999988999999999999999999873 33455555 44433 799532 2 25799999999999986
Q ss_pred CCCcceEEEEeeeecCCccceEE-EEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccc
Q 009149 268 QPARDYYIVVSSRFTSTVLTTTG-ILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLIN 346 (542)
Q Consensus 268 ~~~g~y~i~~~~~~~~~~~~~~a-il~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~ 346 (542)
+.+|+||.+++.... ......| ++.+.....+ .+.+. +..+. ...+....... .. .
T Consensus 108 ~q~GT~WYHsH~~~q-~~~Gl~G~liI~~~~~~~--~p~~~-~d~e~----------~i~l~Dw~~~~--~~-------~ 164 (536)
T PLN02792 108 DQVGSYFYFPSLAVQ-KAAGGYGSLRIYSLPRIP--VPFPE-PAGDF----------TFLIGDWYRRN--HT-------T 164 (536)
T ss_pred CCccceEEecCcchh-hhcccccceEEeCCcccC--cCCCc-cccee----------EEEecccccCC--HH-------H
Confidence 469999999985421 1122333 2233221110 01110 10110 00111110000 00 0
Q ss_pred cceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEE
Q 009149 347 TTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQ 426 (542)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~ 426 (542)
....+...... ........|||+... ....+.++.|++++|+|.
T Consensus 165 ~~~~~~~g~~~--~~~~d~~liNG~~~~----------------------------------~~~~~~v~~Gk~yRlRli 208 (536)
T PLN02792 165 LKKILDGGRKL--PLMPDGVMINGQGVS----------------------------------YVYSITVDKGKTYRFRIS 208 (536)
T ss_pred HHHHhhccCcC--CCCCCEEEEeccCCC----------------------------------CcceEEECCCCEEEEEEE
Confidence 00000000000 001123678876421 013477899999999999
Q ss_pred cCCC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ceeeEEE
Q 009149 427 NDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VGMWNLR 494 (542)
Q Consensus 427 N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG~w~~H 494 (542)
|.+. ...-|+|.||+|.|++.++... .|...|++.|.+|+++.+.++++. +|.|-+.
T Consensus 209 Na~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 209 NVGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred EcCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 9984 4689999999999999975422 345569999999999999999976 4776655
No 32
>PLN02991 oxidoreductase
Probab=99.10 E-value=3.2e-09 Score=114.26 Aligned_cols=224 Identities=13% Similarity=0.126 Sum_probs=138.9
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeE-EEeecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMK-LVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~-via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..++|||+...|.|+++.|+++++++.|.... ...+|.||.... --..||.+. ..-.|.||+.+...+++++.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~-----tQcpI~PG~sftY~F~~~~q 121 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG-----TTCPIPPGKNYTYALQVKDQ 121 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC-----CCCccCCCCcEEEEEEeCCC
Confidence 58999999988999999999999999999864 446666665432 234799632 24579999999999998646
Q ss_pred CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCC-CCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 270 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPG-GPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
+|+||.+++.... ......|-|...+... .+.|. .+..+. ...+....-.. .. ...
T Consensus 122 ~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~~~~d~d~----------~i~l~DW~~~~--~~-------~~~ 178 (543)
T PLN02991 122 IGSFYYFPSLGFH-KAAGGFGAIRISSRPL---IPVPFPAPADDY----------TVLIGDWYKTN--HK-------DLR 178 (543)
T ss_pred CcceEEecCcchh-hhCCCeeeEEEeCCcc---cCccccccccee----------EEEecceecCC--HH-------HHH
Confidence 9999999985422 1122344333332211 01111 010010 00011100000 00 000
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
.. +... ..........|||+.. ...++++.|++++|+|+|.
T Consensus 179 ~~--~~~~-~~~~~~d~~liNG~~~------------------------------------~~~~~v~~G~~yRlRiINa 219 (543)
T PLN02991 179 AQ--LDNG-GKLPLPDGILINGRGS------------------------------------GATLNIEPGKTYRLRISNV 219 (543)
T ss_pred HH--hhcC-CCCCCCCEEEEccCCC------------------------------------CceEEECCCCEEEEEEEec
Confidence 00 0000 0000112356777531 1236789999999999998
Q ss_pred CC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCc-ee-eEE
Q 009149 429 ED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV-GM-WNL 493 (542)
Q Consensus 429 ~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp-G~-w~~ 493 (542)
+. ..+-|+|.||+|+|++.++.. ..|...|++.|.+|+++.+.++++.+ |. |+.
T Consensus 220 ~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~ 276 (543)
T PLN02991 220 GLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDYYIV 276 (543)
T ss_pred cCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcEEEE
Confidence 85 458999999999999997532 23566799999999999999999774 64 544
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.08 E-value=8.9e-09 Score=111.68 Aligned_cols=242 Identities=13% Similarity=0.143 Sum_probs=145.7
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeC-C
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD-Q 268 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~-~ 268 (542)
..++|||+...|.|+++.|+++++++.|.-......+|.||..+.- -..||.+.. ..-.|.||+.+...++++ +
T Consensus 28 ~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~Y~f~~~~~ 103 (538)
T TIGR03390 28 YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFDYEIKPEPG 103 (538)
T ss_pred EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEEEEEEecCC
Confidence 5899999998899999999999999999865445577777764322 236887532 223588999999999875 3
Q ss_pred CCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 269 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 269 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
.+|.||++++... |.....|.|...+... .+.. .+.+ +.+.+....-.. ... ..
T Consensus 104 q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~----~d~e--------~~l~l~Dw~~~~--~~~-------~~ 157 (538)
T TIGR03390 104 DAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYK----YDDE--------RILLVSDFFSAT--DEE-------IE 157 (538)
T ss_pred CCeeeEEecCCch--hhhcceeEEEEccCCc---cCCC----ccCc--------EEEEEeCCCCCC--HHH-------HH
Confidence 6899999998642 2222445444443211 0000 0000 000011100000 000 00
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
..+ +..............|||+........+ .. . ...| ....+.++.|++++|+|+|.
T Consensus 158 ~~~-~~~~~~~~~~~d~~liNG~~~~~~~~~~-------~~-----------~--~~~~-~~~~~~v~~G~~yRlRlINa 215 (538)
T TIGR03390 158 QGL-LSTPFTWSGETEAVLLNGKSGNKSFYAQ-------IN-----------P--SGSC-MLPVIDVEPGKTYRLRFIGA 215 (538)
T ss_pred hhh-hccCCccCCCCceEEECCcccccccccc-------cc-----------C--CCCC-cceEEEECCCCEEEEEEEcc
Confidence 000 0000000011124688987432110000 00 0 0011 23568899999999999999
Q ss_pred CC-CCCCeeecCcc-eEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCc--------eeeEEEe
Q 009149 429 ED-IIQSYHLNGYQ-FWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV--------GMWNLRS 495 (542)
Q Consensus 429 ~~-~~HP~HlHG~~-F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp--------G~w~~HC 495 (542)
+. ...-|+|.||. |+|++.++. +..|...|++.|.+|+++.|.++++.+ |.|.+.-
T Consensus 216 ~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~ 281 (538)
T TIGR03390 216 TALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQF 281 (538)
T ss_pred CCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEE
Confidence 84 45899999999 999999754 235677899999999999999999764 6665543
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.01 E-value=2.2e-08 Score=108.67 Aligned_cols=236 Identities=14% Similarity=0.168 Sum_probs=141.2
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..++|||+...|.|+++.|+++++++.|.... ...+|.||..+.. --.||.+ . ..-.|.||+.+...+++++.
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~dq 122 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKDQ 122 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCCC
Confidence 47899999988999999999999999999874 4577777754432 2378853 2 34589999999999999656
Q ss_pred CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCC-Cc-cccccccccccccccCCCCCCCCCCCCCCCCcccccc
Q 009149 270 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGG-PT-VQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINT 347 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~-~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~ 347 (542)
.|+||.+++.... ......|-|...+... .+.|.. +. .+. ...+....... .. ..
T Consensus 123 ~GT~WYHsH~~~Q-~~~Gl~GalII~~~~~---~~~P~~~~~~~e~----------~i~l~DW~~~~--~~-------~~ 179 (596)
T PLN00044 123 VGSFFYAPSTALH-RAAGGYGAITINNRDV---IPIPFGFPDGGDI----------TLFIADWYARD--HR-------AL 179 (596)
T ss_pred CceeEeeccchhh-hhCcCeeEEEEcCccc---ccccccCCcccce----------EEEecccccCC--HH-------HH
Confidence 9999999985321 1122334333333211 011110 10 000 00011100000 00 00
Q ss_pred ceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEc
Q 009149 348 TKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQN 427 (542)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N 427 (542)
.+.+..... ........|||+.-.......+ + ......++.++.|++++|+|+|
T Consensus 180 ~~~l~~g~~---~~~~d~~lING~g~~~~n~~~~-------------------~----~~~~~~~i~V~~Gk~yRlRiIN 233 (596)
T PLN00044 180 RRALDAGDL---LGAPDGVLINAFGPYQYNDSLV-------------------P----PGITYERINVDPGKTYRFRVHN 233 (596)
T ss_pred HHHHhcCCC---CCCCCceEEcccCccccCCccc-------------------c----CCCccceEEECCCCEEEEEEEE
Confidence 000000000 0001123567643110000000 0 0011236889999999999999
Q ss_pred CC-CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCc-e--eeE
Q 009149 428 DE-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV-G--MWN 492 (542)
Q Consensus 428 ~~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp-G--~w~ 492 (542)
.+ ....-|+|-||+|.|++.++. +..|..-|++.|.+|+++.+.++++.+ | .||
T Consensus 234 aa~~~~~~fsIdgH~mtVIa~DG~-----------~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 234 VGVATSLNFRIQGHNLLLVEAEGS-----------YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred ccCCceEEEEECCCEEEEEEeCCc-----------ccCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 87 556889999999999999742 234667899999999999999999875 5 466
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.96 E-value=4e-08 Score=106.89 Aligned_cols=258 Identities=12% Similarity=0.086 Sum_probs=145.3
Q ss_pred CCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCC
Q 009149 190 PDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 190 ~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
-..+++||+...|.|++++|+++++++.|........+|+||....- -..||.+- +..-.|.||+++...++++
T Consensus 20 ~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~- 94 (541)
T TIGR03388 20 KLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVD- 94 (541)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcC-
Confidence 35799999998899999999999999999976556688888874311 12577531 2345789999999999998
Q ss_pred CCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 269 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 269 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
.+|.||++++.... ......+.|.+.+.... ..+.....+. .+.+....... ... ..
T Consensus 95 ~~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~~---~~p~~~d~e~----------~l~l~Dw~~~~-~~~--------~~ 151 (541)
T TIGR03388 95 RPGTYFYHGHYGMQ-RSAGLYGSLIVDVPDGE---KEPFHYDGEF----------NLLLSDWWHKS-IHE--------QE 151 (541)
T ss_pred CCEEEEEEecchHH-hhccceEEEEEecCCCC---CCCccccceE----------EEEeecccCCC-HHH--------HH
Confidence 69999999985321 11223343443332110 0111000010 00011110000 000 00
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
....... ...........|||+............. .. .+.+. .+........++.++.|++++|+|+|.
T Consensus 152 ~~~~~~~-~~~~~~~d~~liNG~g~~~~~~~~~~~~-~~-~~~~~--------~~~~~~~~~~~~~v~~g~~~RlRliNa 220 (541)
T TIGR03388 152 VGLSSKP-MRWIGEPQSLLINGRGQFNCSLAAKFSS-TN-LPQCN--------LKGNEQCAPQILHVEPGKTYRLRIAST 220 (541)
T ss_pred hhcccCC-CcCCCCCcceEECCCCCCCCccccccCc-cc-cchhh--------ccCCCCCCceEEEECCCCEEEEEEEcc
Confidence 0000000 0000011224677763211000000000 00 00000 000000112357899999999999998
Q ss_pred C-CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ce-eeEEEeec
Q 009149 429 E-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNLRSES 497 (542)
Q Consensus 429 ~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG-~w~~HCHi 497 (542)
+ ...+-|+|.||+|+|++.+++. ..|..-|.+.|.+|+++.|.++++. +| .|-++--.
T Consensus 221 ~~~~~~~~~id~h~~~VIa~DG~~-----------v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 221 TALAALNFAIEGHKLTVVEADGNY-----------VEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred cccceEEEEECCCEEEEEEeCCEe-----------cccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 7 5789999999999999997642 2456679999999999999999975 44 56665443
No 36
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.96 E-value=1.3e-08 Score=108.67 Aligned_cols=228 Identities=12% Similarity=0.010 Sum_probs=142.9
Q ss_pred CeeeEEEEEcCCCccceEEEecCCEEEEEEEeCC-CCCceEEeccccCCCCCCCCCCc----cc-CCCCCCCCeEEEEEE
Q 009149 44 GVRQRGILINWQFPGPDIHSVTNDNLIINVFNSL-DEPFLLSWNGIQNRRNSFEDGVY----GT-TCPIPPGKNFTYILQ 117 (542)
Q Consensus 44 G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l-~~~~~iH~HG~~~~~~~~~DGv~----~~-q~~i~pG~~~~Y~f~ 117 (542)
|.......+||+. -|.+ +.++..+++|+.|.. .....+++.|..... ...||.+ .+ +..+.||++++....
T Consensus 186 ~~~g~~~~vnG~~-~p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-ccee-ecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 3445556677743 3444 445555999999998 566677777655443 4578865 35 678999999999999
Q ss_pred ECCCceeeeEecchhhhhhcceeeEEEEeCCCCCC-CCCC------CC---CCCeEEEEEeeeccchhhHHHhhccCCCC
Q 009149 118 VKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPRIP-VPFP------DP---AGDYTVLIGDWYKSNHTDLRAHLDKGKKL 187 (542)
Q Consensus 118 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~-~~~~------~~---~~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 187 (542)
.. ..|++-+.|.. .+..+-+.+..-........ ..++ .. +............+....... ...-...
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~ 339 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDT-DFHLIGG 339 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccc-cchhhcc
Confidence 64 47888888886 22222233332221100000 0010 00 011111111111111000000 0000011
Q ss_pred CCCCeEEEcCCCC---CceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCccc---ceeeeeeEEEcCCceEE
Q 009149 188 PLPDGILINGRGS---GAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT---LQTTYSSLDVHVGQSYS 261 (542)
Q Consensus 188 ~~~~~~liNG~~~---~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~p~~~~~l~l~pgeR~d 261 (542)
.....+.+||+.. ...+.++.|+++||+|.|-+. -.|.||+||+.|+|++.| ... .+..+|++.+.|++|+.
T Consensus 340 ~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~~~~ 417 (451)
T COG2132 340 IGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGERLL 417 (451)
T ss_pred cccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCeEEE
Confidence 2335688999974 256789999999999999998 677999999999999999 332 34678999999999999
Q ss_pred EEEEeCCCCcceEEEEeee
Q 009149 262 VLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 262 v~v~~~~~~g~y~i~~~~~ 280 (542)
+.++++ .+|.|.++|+..
T Consensus 418 v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 418 VRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEeCC-CCCceEEeccch
Confidence 999998 788999999965
No 37
>PLN02604 oxidoreductase
Probab=98.96 E-value=4.5e-08 Score=106.88 Aligned_cols=256 Identities=16% Similarity=0.152 Sum_probs=146.0
Q ss_pred CCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCC
Q 009149 190 PDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 190 ~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
-..++|||+...|.|+++.|++++++|.|........+|.||+...- ...||.+ .+....|.||+++...++++
T Consensus 43 r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~----~~tq~~i~pg~s~~y~f~~~- 117 (566)
T PLN02604 43 KLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTE----GVTQCPILPGETFTYEFVVD- 117 (566)
T ss_pred eeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCC----ccccCccCCCCeEEEEEEcC-
Confidence 35789999998899999999999999999976566788999985321 1257743 23456789999999999997
Q ss_pred CCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 269 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 269 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
.+|.||++++..... .....+.|.+.+..... .+.. .+.+.. ..+....... +.+.. .+.
T Consensus 118 ~~Gt~wyH~H~~~q~-~~Gl~G~liV~~~~~~~-~p~~----~d~d~~--------l~l~Dw~~~~-~~~~~-~~~---- 177 (566)
T PLN02604 118 RPGTYLYHAHYGMQR-EAGLYGSIRVSLPRGKS-EPFS----YDYDRS--------IILTDWYHKS-TYEQA-LGL---- 177 (566)
T ss_pred CCEEEEEeeCcHHHH-hCCCeEEEEEEecCCCC-Cccc----cCcceE--------EEeeccccCC-HHHHH-Hhh----
Confidence 799999999853211 12233444444321100 0110 010000 0011100000 00000 000
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
....+.. ........|||+......... .... ..+... . .........++++.|++++|+|+|.
T Consensus 178 ~~~~~~~----~~~~d~~liNG~G~~~~~~~~--~~~~-~~~~~~-------~--~~~~~~~~~~~v~~g~~~RlRlINa 241 (566)
T PLN02604 178 SSIPFDW----VGEPQSLLIQGKGRYNCSLVS--SPYL-KAGVCN-------A--TNPECSPYVLTVVPGKTYRLRISSL 241 (566)
T ss_pred ccCCCcc----CCCCCceEEcCCCCCCCcccc--Cccc-cccccc-------c--CCCCCCceEEEecCCCEEEEEEEec
Confidence 0000000 001112456665321100000 0000 000000 0 0000123367899999999999998
Q ss_pred C-CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ce-eeEEEeec
Q 009149 429 E-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNLRSES 497 (542)
Q Consensus 429 ~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG-~w~~HCHi 497 (542)
+ ....-|+|-||+|+|++.++.. ..|..-|.+.|.+|+++.|.++++. +| .|-++...
T Consensus 242 ~~~~~~~~sidgH~~~VIa~DG~~-----------v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 242 TALSALSFQIEGHNMTVVEADGHY-----------VEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred cccceEEEEECCCEEEEEEeCCEe-----------cccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 8 4579999999999999997642 2466779999999999999999965 45 56666543
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.85 E-value=3.9e-09 Score=93.87 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=72.5
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCC-------------ccc--CCCCCCCCeEEEEEEECCCc
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGV-------------YGT--TCPIPPGKNFTYILQVKDQI 122 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv-------------~~~--q~~i~pG~~~~Y~f~~~~~~ 122 (542)
.+.+.++.|+.+++.+.|.....+.+|+||.........++. +.. ...|.||+..+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 578999999999999999999999999999876432111111 111 2458899999999997 689
Q ss_pred eeeeEecchhhhhhcceeeEEEEeC
Q 009149 123 GSFYYFPSLAFHKAAGGFGGIRILS 147 (542)
Q Consensus 123 Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (542)
|.|.||||...+...||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.81 E-value=2.2e-07 Score=101.43 Aligned_cols=256 Identities=12% Similarity=0.114 Sum_probs=142.6
Q ss_pred CCeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEE-EeecCcccceeeeeeEEEcCCceEEEEEEeCC
Q 009149 190 PDGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKL-VEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 190 ~~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
...++|||+...|.|+++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.||+.+...++++
T Consensus 42 ~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~- 116 (574)
T PLN02191 42 GAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE- 116 (574)
T ss_pred eeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC-
Confidence 35899999998899999999999999999976455677777764321 12577542 2234699999999999997
Q ss_pred CCcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCCCCCCCccccccc
Q 009149 269 PARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQIDWSLNQARSIRSNLTASGPRPNPQGSYHYGLINTT 348 (542)
Q Consensus 269 ~~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~~~~~~~~~~ 348 (542)
.+|.||++++.... ......|.|..++...+. .+.....+. .+.+....-...+..........
T Consensus 117 ~~GT~wYHsH~~~q-~~~Gl~G~liV~~~~~~~---~~~~~d~e~----------~l~l~Dw~~~~~~~~~~~~~~~~-- 180 (574)
T PLN02191 117 KPGTHFYHGHYGMQ-RSAGLYGSLIVDVAKGPK---ERLRYDGEF----------NLLLSDWWHESIPSQELGLSSKP-- 180 (574)
T ss_pred CCeEEEEeeCcHHH-HhCCCEEEEEEccCCCCC---CCCCCCeeE----------EEeeeccccCChHHHHHhhccCC--
Confidence 69999999985321 112233444443221110 011000110 00011100000000000000000
Q ss_pred eEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEEEEEcC
Q 009149 349 KTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEIVFQND 428 (542)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~~i~N~ 428 (542)
... ........|||+.-.......... .+ ...+ .+....+ .. ....++.++.|++++|+|+|.
T Consensus 181 ----~~~----~~~~d~~liNG~g~~~~~~~~~~~-----~~-~~~~-~~~~~~n-~~-~~p~~~~v~~G~~yRlRiINa 243 (574)
T PLN02191 181 ----MRW----IGEAQSILINGRGQFNCSLAAQFS-----NG-TELP-MCTFKEG-DQ-CAPQTLRVEPNKTYRIRLAST 243 (574)
T ss_pred ----CCc----CCCCCceEECCCCCCCCccccccc-----CC-cccc-cceeccC-CC-CCceEEEEcCCCEEEEEEEec
Confidence 000 001122467765321100000000 00 0000 0000000 00 112368999999999999998
Q ss_pred C-CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ce-eeEEE
Q 009149 429 E-DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNLR 494 (542)
Q Consensus 429 ~-~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG-~w~~H 494 (542)
+ ...+-|+|.||+|.|++.++.. ..|...|++.|.+|+++.|.++++. +| .|-++
T Consensus 244 ~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ir 301 (574)
T PLN02191 244 TALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYIS 301 (574)
T ss_pred CCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEE
Confidence 7 5679999999999999997532 2466789999999999999999976 44 44444
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.77 E-value=4.7e-08 Score=84.05 Aligned_cols=90 Identities=14% Similarity=0.121 Sum_probs=68.0
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ce
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG 489 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG 489 (542)
+++.++.|+.|++.+.|.....+.+|.||...- . ..+..... ... .-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~----~-~~~~DG~~--~~~-------~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQP----P-SPWMDGVP--GVT-------QCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBST----T-GGGGSGGT--TTS-------GSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeee----e-eeecCCcc--ccc-------ceeEEeecceeeeEeeecccc
Confidence 357899999999999999988999999996531 0 00110000 000 024778999999999988 99
Q ss_pred eeEEEeechhhhhcceEEEEEEecC
Q 009149 490 MWNLRSESWARQYLGQQFYLRVYTA 514 (542)
Q Consensus 490 ~w~~HCHil~H~d~GMm~~~~V~~~ 514 (542)
.|.||||...|...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999998878999999999764
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.59 E-value=4.5e-06 Score=89.90 Aligned_cols=229 Identities=18% Similarity=0.268 Sum_probs=143.6
Q ss_pred CeEEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEeccee-EEEeecCcccceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 191 DGILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKM-KLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~-~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
..++|||+...|.|+++.|+++.++++|-.. ..+.+|.+|-.. .---.||.++ ..=.|.|||.|...++.++.
T Consensus 48 ~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~q 121 (563)
T KOG1263|consen 48 QVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKDQ 121 (563)
T ss_pred eeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCCc
Confidence 5789999998899999999999999999955 666777777532 2233499433 22258999999999999978
Q ss_pred CcceEEEEeeeecCCccceEEEEEecCCCCCCCCCCCCCCcccc-----ccccc-cccccccCCCCCCCCCCCCCCCCcc
Q 009149 270 ARDYYIVVSSRFTSTVLTTTGILHYSNSAGPVSGPIPGGPTVQI-----DWSLN-QARSIRSNLTASGPRPNPQGSYHYG 343 (542)
Q Consensus 270 ~g~y~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~-----~~~~~-~~~~l~~~l~~~~~~~~p~~~~~~~ 343 (542)
.|+||.+++..+.-. ....|-|.....+... .+.+ .|..+. +|-.+ ..+.+...+......|
T Consensus 122 ~GT~~yh~h~~~~Ra-~G~~G~liI~~~~~~p-~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p--------- 189 (563)
T KOG1263|consen 122 IGTLWYHSHVSWQRA-TGVFGALIINPRPGLP-VPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALP--------- 189 (563)
T ss_pred ceeEEEeeccccccc-cCceeEEEEcCCccCC-CCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCC---------
Confidence 999999998653211 1134433333222100 1111 121111 11110 1111111110000000
Q ss_pred ccccceEEEecccccccCCeEEEEEcCeeecCCCCchhhhcccccCcceecCCCCCCCCCCCccccceEEeccCCcEEEE
Q 009149 344 LINTTKTIRLSSSAGQVNGKQRYAINSVSFIPADTPLKLADYFKIGGVFRIGSISDNPTGGGIYQDTAVMGADYRAFIEI 423 (542)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~iNg~~f~~~~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~v~~ 423 (542)
.......|||+.. ....|...+++..|+++.|
T Consensus 190 -----------------~~~D~~~iNg~~g-------------------------------~~~~~~~~l~v~pGktY~l 221 (563)
T KOG1263|consen 190 -----------------NPSDGVLINGRSG-------------------------------FLYNCTPTLTVEPGKTYRL 221 (563)
T ss_pred -----------------CCCCceEECCCCC-------------------------------cccCceeEEEEcCCCEEEE
Confidence 0011246777651 1223467789999999999
Q ss_pred EEEcCC--CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-ce-eeEEEeec
Q 009149 424 VFQNDE--DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN-VG-MWNLRSES 497 (542)
Q Consensus 424 ~i~N~~--~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn-pG-~w~~HCHi 497 (542)
+|.|.+ ...+ |.|=||...||+.++- ...|..-|++.|.+|++..+-++||. ++ .|+-=|=.
T Consensus 222 RiiN~g~~~~l~-F~I~~H~ltvVe~Dg~-----------y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~ 287 (563)
T KOG1263|consen 222 RIINAGLNTSLN-FSIANHQLTVVEVDGA-----------YTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPY 287 (563)
T ss_pred EEEccccccceE-EEECCeEEEEEEecce-----------EEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEee
Confidence 999987 3345 9999999999998642 22345669999999999999999976 45 35555543
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.58 E-value=7.4e-07 Score=76.93 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=55.4
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhc
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAA 137 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (542)
-+.|++++||+ |+++|....++++.+.|.... ... ...+.||++++|.|.. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~--V~~~N~~~~~H~v~~~~~~~~--~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDT--VKWVNNKLAPHNAVFDGAKEL--SHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCE--EEEEECCCCCceEEecCCccc--ccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 47899999998 466788777788776543100 011 1347899999999982 899999997 56678
Q ss_pred ceeeEEEEe
Q 009149 138 GGFGGIRIL 146 (542)
Q Consensus 138 Gl~G~liV~ 146 (542)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.33 E-value=1.4e-06 Score=73.42 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=46.2
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhc
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAA 137 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (542)
-.+|+++.|++|+|+++|.....+.+...++.. ...|.||++.++.|+ +.++|+|=|+|-.+. .
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~---~ 97 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHP---N 97 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS----T
T ss_pred cCEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCC---c
Confidence 348999999999999999987776666666422 145899999999998 578999999999766 2
Q ss_pred ceeeEEEE
Q 009149 138 GGFGGIRI 145 (542)
Q Consensus 138 Gl~G~liV 145 (542)
|.|-|||
T Consensus 98 -m~G~liV 104 (104)
T PF13473_consen 98 -MKGTLIV 104 (104)
T ss_dssp -TB-----
T ss_pred -ceecccC
Confidence 6777765
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.26 E-value=4.8e-06 Score=69.42 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=56.8
Q ss_pred ccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCC-CCCCCccc-CCCCCCCCeEEEEEEECCCceeeeEecchhhh
Q 009149 57 PGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNS-FEDGVYGT-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFH 134 (542)
Q Consensus 57 pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~-~~DGv~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q 134 (542)
--..|++++||+| +++|....++++.++........ ...+...- ...+.||+++++.|.. +|+|+|||- .+
T Consensus 15 ~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H 87 (99)
T TIGR02656 15 EPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PH 87 (99)
T ss_pred eCCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Cc
Confidence 3468999999985 56687667777776543211100 00011100 2346899999999882 899999998 78
Q ss_pred hhcceeeEEEEe
Q 009149 135 KAAGGFGGIRIL 146 (542)
Q Consensus 135 ~~~Gl~G~liV~ 146 (542)
...||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 888999999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.18 E-value=4.7e-06 Score=75.97 Aligned_cols=92 Identities=15% Similarity=0.207 Sum_probs=76.8
Q ss_pred ceEEeccCCcEEEEEEEcCCC-CCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecC-
Q 009149 410 TAVMGADYRAFIEIVFQNDED-IIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDN- 487 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn- 487 (542)
..++.++.|++++|.|.|.+. ..+.|++.||+|+|++.++... .|...|++.|.+|+.+.+.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v-----------~p~~~~~l~l~~G~R~dvlv~~~~~ 127 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPV-----------EPYKVDTLVLAPGQRYDVLVTADQP 127 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEE-----------EEEEESBEEE-TTEEEEEEEEECSC
T ss_pred cceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeeccccc-----------cccccceEEeeCCeEEEEEEEeCCC
Confidence 456889999999999999884 5799999999999999975322 266789999999999999999987
Q ss_pred ceeeEEEe----echhhhhcceEEEEEEe
Q 009149 488 VGMWNLRS----ESWARQYLGQQFYLRVY 512 (542)
Q Consensus 488 pG~w~~HC----Hil~H~d~GMm~~~~V~ 512 (542)
+|.|.++| +...+...|+...+.+.
T Consensus 128 ~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 128 PGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp SSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 55677888888877664
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.09 E-value=7.8e-06 Score=68.15 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=55.3
Q ss_pred CccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCC------ccc-CCCCCCCCeEEEEEEECCCceeeeEe
Q 009149 56 FPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGV------YGT-TCPIPPGKNFTYILQVKDQIGSFYYF 128 (542)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv------~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH 128 (542)
|--..|++++||+| +++|....++++.+=-- ....|. +.- ...+.||+++++.|+ ++|+|.|+
T Consensus 14 F~P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~ 83 (99)
T PF00127_consen 14 FDPSEITVKAGDTV--TFVNNDSMPHNVVFVAD-----GMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYY 83 (99)
T ss_dssp EESSEEEEETTEEE--EEEEESSSSBEEEEETT-----SSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEE
T ss_pred EeCCEEEECCCCEE--EEEECCCCCceEEEecc-----cccccccccccCccccceecCCCCEEEEEeC---CCeEEEEE
Confidence 33578999999985 57776666666665220 111111 000 123789999999998 59999999
Q ss_pred cchhhhhhcceeeEEEEe
Q 009149 129 PSLAFHKAAGGFGGIRIL 146 (542)
Q Consensus 129 ~H~~~q~~~Gl~G~liV~ 146 (542)
|- - |...||.|.|+|+
T Consensus 84 C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 84 CT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp ET-T-TGGTTSEEEEEEE
T ss_pred cC-C-CcccCCEEEEEEC
Confidence 98 4 8888999999996
No 47
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.98 E-value=3.8e-05 Score=61.75 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=52.2
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhc
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAA 137 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (542)
-+.|++++||+| +++|....++++++....- ...+-. ...+.||+++++.|+ ++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~---~~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVL---GEAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCC---cccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 468999999996 5689877788888754210 001100 123578888888775 5999999998764
Q ss_pred ceeeEEEEe
Q 009149 138 GGFGGIRIL 146 (542)
Q Consensus 138 Gl~G~liV~ 146 (542)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 499999985
No 48
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.97 E-value=2.9e-05 Score=83.46 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=68.8
Q ss_pred EecCCCeeeEE--EEEcCCCccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEE
Q 009149 39 DIYPLGVRQRG--ILINWQFPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYIL 116 (542)
Q Consensus 39 ~~~~~G~~~~~--~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f 116 (542)
.+..+|.+.++ ....-.|--..|+|++||.|.++++|.-...-.+ ||+.+... |+ +.-+.||++.+..|
T Consensus 533 ~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI---~~dv~PG~t~svtF 603 (635)
T PRK02888 533 KVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV---NMEVAPQATASVTF 603 (635)
T ss_pred ceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc---cEEEcCCceEEEEE
Confidence 35567765544 4555566556899999999999999953211111 56544321 11 24478999999999
Q ss_pred EECCCceeeeEecchh---hhhhcceeeEEEEeCC
Q 009149 117 QVKDQIGSFYYFPSLA---FHKAAGGFGGIRILSR 148 (542)
Q Consensus 117 ~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~ 148 (542)
+ ++++|+|||||..- .| .+|.|-|+|+++
T Consensus 604 ~-adkPGvy~~~CtefCGa~H--~~M~G~~iVep~ 635 (635)
T PRK02888 604 T-ADKPGVYWYYCTWFCHALH--MEMRGRMLVEPK 635 (635)
T ss_pred E-cCCCEEEEEECCcccccCc--ccceEEEEEEeC
Confidence 9 58999999999952 44 389999999873
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.97 E-value=3.4e-05 Score=68.99 Aligned_cols=88 Identities=8% Similarity=-0.037 Sum_probs=58.2
Q ss_pred eEEeccCCcEEEEEEEcCCC-CCCCeeecCcceEE--EeecCCCCCCcCCCCCCCCCCCcceEEEeCC---C--CEEEEE
Q 009149 411 AVMGADYRAFIEIVFQNDED-IIQSYHLNGYQFWV--VGMDGGQWTSASRNQYNLRDAVARVTVQVYP---K--SWSAIY 482 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~-~~HP~HlHG~~F~V--l~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp---~--g~~~ir 482 (542)
..+.++.|+.|++.+.|.+. ..|.|-||.+.-.. .....|. +..-..-.+|+ + ++..+.
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~~~~~t 118 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFGYTDFT 118 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccceeEEE
Confidence 34789999999999999874 66777776422100 0000000 11111112222 2 246888
Q ss_pred EEecCceeeEEEeechhhhhcceEEEEEE
Q 009149 483 IALDNVGMWNLRSESWARQYLGQQFYLRV 511 (542)
Q Consensus 483 f~adnpG~w~~HCHil~H~d~GMm~~~~V 511 (542)
|+|+.+|.+.||||+..|...||-..+.|
T Consensus 119 f~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 119 YHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 99999999999999999999999999887
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.84 E-value=0.00019 Score=64.36 Aligned_cols=99 Identities=16% Similarity=0.093 Sum_probs=72.4
Q ss_pred EEEEcCCCcc-ceEEEecCCEEEEEEEeCCCCCceEEeccccCC----CCCCCCCC----cccC------CCCCCCCeEE
Q 009149 49 GILINWQFPG-PDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNR----RNSFEDGV----YGTT------CPIPPGKNFT 113 (542)
Q Consensus 49 ~~~~Ng~~pg-P~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~----~~~~~DGv----~~~q------~~i~pG~~~~ 113 (542)
.+-|||+..| ++|.+..|=+|.|++.|.-.-++++-.==-..+ .....||. +|.+ ..|.+|++..
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 4678888776 799999999999999999766665544111000 11345775 2221 2366788866
Q ss_pred EEEEECCCceeeeEecchhhhhhcceeeEEEEeCC
Q 009149 114 YILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSR 148 (542)
Q Consensus 114 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (542)
=.|. +-++|+|||-|-...|..+||+|-+||...
T Consensus 154 g~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 154 GWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEec-cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 5666 568999999999999999999999999974
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.68 E-value=0.00034 Score=64.23 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=72.6
Q ss_pred EEEEEcCCCcc-ceEEEecCCEEEEEEEeCCCCCceEEe--ccccC--CCCCCCCCC----ccc------CCCCCCCCeE
Q 009149 48 RGILINWQFPG-PDIHSVTNDNLIINVFNSLDEPFLLSW--NGIQN--RRNSFEDGV----YGT------TCPIPPGKNF 112 (542)
Q Consensus 48 ~~~~~Ng~~pg-P~i~v~~Gd~v~i~v~N~l~~~~~iH~--HG~~~--~~~~~~DGv----~~~------q~~i~pG~~~ 112 (542)
..+.|||..-| ++|.+..|-+|.|+++|.-.-++++-. -+..+ ......||. +|. ...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 36788887654 799999999999999998644443322 11111 122345663 121 2358899999
Q ss_pred EEEEEECCCceeeeEecchhhhhhcceeeEEEEeCC
Q 009149 113 TYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILSR 148 (542)
Q Consensus 113 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (542)
.-.|. +-++|.|||=|-...|...||++-|+|.+.
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 87776 357999999999999999999999999974
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.54 E-value=0.00033 Score=58.28 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=57.5
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.++.|++|+|+ |.+...|-+.++...+..-.. . .......+++.+.||+...+.|.. ||.|
T Consensus 18 ~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~pG~t~~~tF~~--~G~y 80 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK-----E--------LAKSLSHKDLLNSPGESYEVTFST--PGTY 80 (99)
T ss_pred EEEECCCCEEEEE--ECCCCCceEEECCCCCccchh-----h--------hcccccccccccCCCCEEEEEeCC--CEEE
Confidence 4789999998885 766677888776432211100 0 001123467888999988876664 9999
Q ss_pred EEEeechhhhhcceEEEEEEe
Q 009149 492 NLRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V~ 512 (542)
.|||- .|...||...+.|.
T Consensus 81 ~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 81 TFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEcC--CccccCCEEEEEEC
Confidence 99998 69999999999873
No 53
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.51 E-value=0.00046 Score=59.48 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=55.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcc
Q 009149 59 PDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAG 138 (542)
Q Consensus 59 P~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (542)
-+|+|++||+ |++.|.....++++.-+.. ..+|.- ...-.+|+++++.|. .+|+|-|+|- -|...|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~--PH~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFE---TPGEYTYYCT--PHPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEec---ccceEEEEec--cCCCCC
Confidence 3799999999 7899998778888876542 123331 233445688887777 3999999997 467789
Q ss_pred eeeEEEEeC
Q 009149 139 GFGGIRILS 147 (542)
Q Consensus 139 l~G~liV~~ 147 (542)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 54
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.51 E-value=0.00067 Score=57.87 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=50.3
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEe-ccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSW-NGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKA 136 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~-HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 136 (542)
...|+|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|. ++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 4579999999965555543 455544 221 1122211 12245777777765 5899999998 7788
Q ss_pred cceeeEEEEeCC
Q 009149 137 AGGFGGIRILSR 148 (542)
Q Consensus 137 ~Gl~G~liV~~~ 148 (542)
.||.|.|+|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 999999999884
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.41 E-value=0.00069 Score=58.85 Aligned_cols=59 Identities=10% Similarity=0.245 Sum_probs=50.1
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.++.|+.|+|.+.|.+...|.+-++++.+ ...++||+...++|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi---------------------------s~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYGI---------------------------SEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCCc---------------------------ceEECCCCeEEEEEECCCCEEE
Confidence 3789999999999999998888877776421 2567889999999999999999
Q ss_pred EEEeec
Q 009149 492 NLRSES 497 (542)
Q Consensus 492 ~~HCHi 497 (542)
-|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999976
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.09 E-value=0.0031 Score=53.69 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=50.6
Q ss_pred cceEEEecCCEEEEEEEeCC-CCCceEEeccccCCCCCCCC-CCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSL-DEPFLLSWNGIQNRRNSFED-GVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHK 135 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l-~~~~~iH~HG~~~~~~~~~D-Gv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 135 (542)
-..|+|++||+| +++|+. ..++++..=+ . ...| + .....+|++|+|.|. ++|+|=|+|- .|.
T Consensus 41 P~~ltV~~GdTV--tw~~~~d~~~HnV~s~~----~-~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTV--VWEWTGEGGGHNVVSDG----D-GDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCV--PHE 104 (115)
T ss_pred CCEEEECCCCEE--EEEECCCCCCEEEEECC----C-CCcccc----ccccCCCCEEEEEec---CCcEEEEEcc--CCC
Confidence 457999999995 577544 4566665311 0 1111 1 123578999999996 5899999998 456
Q ss_pred hcceeeEEEEe
Q 009149 136 AAGGFGGIRIL 146 (542)
Q Consensus 136 ~~Gl~G~liV~ 146 (542)
..||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 67899999985
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.63 E-value=0.006 Score=51.17 Aligned_cols=60 Identities=7% Similarity=0.167 Sum_probs=42.2
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.++.|+.+.+++.|.+...|-|.+-+ . + -...+++|+..++.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~-------~-------------------~-~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD-------L-------------------G-ISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG-------G-------------------T-EEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC-------C-------------------c-eEEEECCCCEEEEEEcCCCCEEE
Confidence 4789999999999999987765555554 1 1 22778899999999999999999
Q ss_pred EEEeech
Q 009149 492 NLRSESW 498 (542)
Q Consensus 492 ~~HCHil 498 (542)
-|+|-+-
T Consensus 89 ~~~C~~~ 95 (104)
T PF13473_consen 89 EFYCTMH 95 (104)
T ss_dssp EEB-SSS
T ss_pred EEEcCCC
Confidence 9999963
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.51 E-value=0.021 Score=47.45 Aligned_cols=82 Identities=7% Similarity=0.002 Sum_probs=53.6
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCc-CCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSA-SRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
..+.++.|++|.|+.. +...|.+. +...+ +... ...... ..-.+..+.+|+...+.|. .+|
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~-------~~~~~---~~~~~~~~~~~----~~~~~~~~~~G~~~~~tF~--~~G 78 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVV-------FVADG---MPAGADSDYVP----PGDSSPLLAPGETYSVTFT--KPG 78 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEE-------EETTS---SHTTGGHCHHS----TTCEEEEBSTTEEEEEEEE--SSE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEE-------Eeccc---ccccccccccC----ccccceecCCCCEEEEEeC--CCe
Confidence 3478999999988655 45655444 33311 1100 000001 1115677888888777766 999
Q ss_pred eeEEEeechhhhhcceEEEEEEe
Q 009149 490 MWNLRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 490 ~w~~HCHil~H~d~GMm~~~~V~ 512 (542)
.|.|+|- - |...||-..+.|.
T Consensus 79 ~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 79 TYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999 4 9999999999884
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.98 E-value=0.027 Score=48.52 Aligned_cols=70 Identities=10% Similarity=0.025 Sum_probs=49.6
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|++|+| .|.+...|.+.+.+... + ..+| ..+.+|+...+.|.. ||.|.
T Consensus 49 i~v~~Gd~V~~--~N~~~~~H~v~~~~~~~---------~-------------~~~~-~~~~pg~t~~~tF~~--~G~y~ 101 (119)
T PRK02710 49 LTIKAGDTVKW--VNNKLAPHNAVFDGAKE---------L-------------SHKD-LAFAPGESWEETFSE--AGTYT 101 (119)
T ss_pred EEEcCCCEEEE--EECCCCCceEEecCCcc---------c-------------cccc-cccCCCCEEEEEecC--CEEEE
Confidence 67899999887 47667788876542110 0 0012 346778877766654 99999
Q ss_pred EEeechhhhhcceEEEEEE
Q 009149 493 LRSESWARQYLGQQFYLRV 511 (542)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V 511 (542)
|+|= .|...||-..+.|
T Consensus 102 y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 102 YYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEcC--CCccCCcEEEEEE
Confidence 9997 5888999999988
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.94 E-value=0.027 Score=61.13 Aligned_cols=74 Identities=11% Similarity=0.218 Sum_probs=56.0
Q ss_pred EEeccCCcEEEEEEEcCC---CCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCc
Q 009149 412 VMGADYRAFIEIVFQNDE---DIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNV 488 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~---~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 488 (542)
.+.++.|+.|.+.+.|.+ +..|-|-+-++.. -+.+.||.+..+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 377999999999999974 5677776643321 1345688999999999999
Q ss_pred eeeEEEeechhhh-hcceEEEEEEe
Q 009149 489 GMWNLRSESWARQ-YLGQQFYLRVY 512 (542)
Q Consensus 489 G~w~~HCHil~H~-d~GMm~~~~V~ 512 (542)
|.|.+||...-|. |.+|...+.|+
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEE
Confidence 9999999875332 35788777774
No 61
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.49 E-value=0.099 Score=41.81 Aligned_cols=71 Identities=8% Similarity=0.066 Sum_probs=46.4
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.+..|++|.| .|.+...|-.+++...+ +..+ +. ...+.++.. .+++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~~-------------~~-~~~~~~g~~--~~~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEAA-------------LK-GPMMKKEQA--YSLTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------cccc-------------cc-ccccCCCCE--EEEECCCCEEE
Confidence 367899999888 67777888888753211 0000 11 112345554 44667889999
Q ss_pred EEEeechhhhhcceEEEEEE
Q 009149 492 NLRSESWARQYLGQQFYLRV 511 (542)
Q Consensus 492 ~~HCHil~H~d~GMm~~~~V 511 (542)
.|||=+ |. .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999987 44 58887776
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=94.95 E-value=0.17 Score=43.15 Aligned_cols=38 Identities=8% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCEEEEEEEecCceeeEEEeechhhhhcceEEEEEEecCCc
Q 009149 475 PKSWSAIYIALDNVGMWNLRSESWARQYLGQQFYLRVYTAST 516 (542)
Q Consensus 475 p~g~~~irf~adnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 516 (542)
++.. +.++++.+|.|-|+|= .|...||-..+.|.++..
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~ 91 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPA 91 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCc
Confidence 4554 4566688999999999 599999999999987643
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.093 Score=46.42 Aligned_cols=93 Identities=10% Similarity=0.095 Sum_probs=65.6
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|++++.++.|.....|=|=+= ++....+ .+..... ..-..---..++.|.||....|-+.+.++|.+-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~--~~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLE--HVTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccch--hHHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 56889999999999998776655443 1111111 1100000 000011234689999999999999999999999
Q ss_pred EEeechhhhhcceEEEEEEe
Q 009149 493 LRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V~ 512 (542)
|-|-|-.|-+.||-..++|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999884
No 64
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=94.17 E-value=0.23 Score=42.79 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=50.2
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh-hhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKA 136 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (542)
.+.|.+..|++|++.+++. +.-+++...++.. +.-+.||+.....|++ +++|+|++.|..- ....
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4689999999999999995 4443444333211 2346799999999995 7899999999842 2222
Q ss_pred cceeeEEEE
Q 009149 137 AGGFGGIRI 145 (542)
Q Consensus 137 ~Gl~G~liV 145 (542)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 336676665
No 65
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=93.59 E-value=0.6 Score=48.12 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=53.0
Q ss_pred CccceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc--CCCCCCCCeEEEEEEECCCceeeeEecchhh
Q 009149 56 FPGPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT--TCPIPPGKNFTYILQVKDQIGSFYYFPSLAF 133 (542)
Q Consensus 56 ~pgP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~--q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~ 133 (542)
+--..+.+..|+ +.+.|+|....++..-. .+|+..+ ...|.||.+..+.+++ .+|+|-|+|-.
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~-- 105 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGL-- 105 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecCc--
Confidence 434579999996 89999999765533211 0222211 2569999999988876 59999999933
Q ss_pred hhhcceeeEEEEeCC
Q 009149 134 HKAAGGFGGIRILSR 148 (542)
Q Consensus 134 q~~~Gl~G~liV~~~ 148 (542)
+ ..+.|.|+|.+.
T Consensus 106 ~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 106 L--TNPKGKLIVKGE 118 (375)
T ss_pred C--CCCCceEEEeCC
Confidence 2 335899999874
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.54 E-value=0.87 Score=39.19 Aligned_cols=75 Identities=8% Similarity=0.069 Sum_probs=54.1
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
...+.++.|+.|.+.+.+.+ ..|-|.+-+.... +.+-||....+.|+++.||
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D-ViHsf~ip~~~~k---------------------------~d~~PG~~~~~~~~~~~~G 96 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED-VIHSFWIPELGIK---------------------------MDAIPGRTNSVTFTPDKPG 96 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS-S-EEEEETTCTEE---------------------------EEEBTTCEEEEEEEESSSE
T ss_pred cceecccccceEeEEEEcCC-ccccccccccCcc---------------------------cccccccceeeeeeeccCC
Confidence 34578999999999999974 6677776543321 3445788999999999999
Q ss_pred eeEEEeechh-hhhcceEEEEEEe
Q 009149 490 MWNLRSESWA-RQYLGQQFYLRVY 512 (542)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~ 512 (542)
.+-..|..+= .-|..|...+.|+
T Consensus 97 ~y~~~C~e~CG~gH~~M~~~v~VV 120 (120)
T PF00116_consen 97 TYYGQCAEYCGAGHSFMPGKVIVV 120 (120)
T ss_dssp EEEEEE-SSSSTTGGG-EEEEEEE
T ss_pred cEEEcCccccCcCcCCCeEEEEEC
Confidence 9999999863 4456677777663
No 67
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.16 Score=44.89 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=53.2
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEe--c----ceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEE
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQ--N----HKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYI 275 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~--g----h~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i 275 (542)
..++++.|+++|+-+.|.+.-. +.|.++ + |.-..+.+| -.+--...++.|.||+...+++++. .+|.|.+
T Consensus 63 ~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft-~~g~ye~ 138 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFT-GAGKYEF 138 (158)
T ss_pred CcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEec-CCccEEE
Confidence 5689999999999999998743 455554 1 111112222 1112345789999999999999998 6999999
Q ss_pred EEee
Q 009149 276 VVSS 279 (542)
Q Consensus 276 ~~~~ 279 (542)
.|..
T Consensus 139 ~C~i 142 (158)
T COG4454 139 ACNI 142 (158)
T ss_pred EecC
Confidence 9974
No 68
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.25 E-value=0.63 Score=39.65 Aligned_cols=72 Identities=11% Similarity=0.037 Sum_probs=46.0
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|++|.|+-++ +...|-. .+.+.+.|+.. .....+++...+ +++.||.|-
T Consensus 44 ltV~~GdTVtw~~~~-d~~~HnV---------~s~~~~~f~s~--------------~~~~~~G~t~s~--Tf~~~G~Y~ 97 (115)
T TIGR03102 44 IRVDPGTTVVWEWTG-EGGGHNV---------VSDGDGDLDES--------------ERVSEEGTTYEH--TFEEPGIYL 97 (115)
T ss_pred EEECCCCEEEEEECC-CCCCEEE---------EECCCCCcccc--------------ccccCCCCEEEE--EecCCcEEE
Confidence 679999999994333 2344443 22322333311 112345665444 457899999
Q ss_pred EEeechhhhhcceEEEEEEe
Q 009149 493 LRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V~ 512 (542)
|+|=. |..+||-..+.|.
T Consensus 98 Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 98 YVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEccC--CCCCCCEEEEEEC
Confidence 99995 9999999999883
No 69
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.59 E-value=2.5 Score=39.27 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=59.7
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCc-----CCCC-CCCCCCCcceEEEeCCCCEEEEEEEe
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSA-----SRNQ-YNLRDAVARVTVQVYPKSWSAIYIAL 485 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-----~~~~-~~~~~p~~rDTv~vpp~g~~~irf~a 485 (542)
.+.++.|-.|.+++.|.+.+ .|.|-|+..+....... .+.. +--..+.--..--+.+|.....-+..
T Consensus 87 ~i~VPAGw~V~i~f~N~~~l-------~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~ 159 (196)
T PF06525_consen 87 TIYVPAGWNVQITFTNQESL-------PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYND 159 (196)
T ss_pred EEEEcCCCEEEEEEEcCCCC-------CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEcc
Confidence 46789999999999999887 55777775543211100 0000 00000000011123356666555656
Q ss_pred cCceeeEEEeechhhhhcceEEEEEEec
Q 009149 486 DNVGMWNLRSESWARQYLGQQFYLRVYT 513 (542)
Q Consensus 486 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 513 (542)
-.+|.|.+=|-+.-|...||-..+.|-+
T Consensus 160 l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 160 LPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred CCCceEEEEccCCChhhcCCEEEEEEec
Confidence 6799999999999999999999999854
No 70
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.02 E-value=1.4 Score=37.81 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=53.7
Q ss_pred cceEEEec-CCEEEEEEEeCCCCCceEEec--------------------cccCCCCCCCCCCcc-c--CCCCCCCCeEE
Q 009149 58 GPDIHSVT-NDNLIINVFNSLDEPFLLSWN--------------------GIQNRRNSFEDGVYG-T--TCPIPPGKNFT 113 (542)
Q Consensus 58 gP~i~v~~-Gd~v~i~v~N~l~~~~~iH~H--------------------G~~~~~~~~~DGv~~-~--q~~i~pG~~~~ 113 (542)
-.+|.|.. |..|.|+++|.-.-+...==| |.....-+..| +. + ..-|.|||+.+
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d--~~ViAhTkliggGes~s 92 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGD--ARVIAHTKVIGGGEKTS 92 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCC--cceEEEccccCCCceEE
Confidence 45799998 478999999984322111112 11111111111 11 1 34589999999
Q ss_pred EEEEECC-Ccee-eeEecchhhhhhcceeeEEE
Q 009149 114 YILQVKD-QIGS-FYYFPSLAFHKAAGGFGGIR 144 (542)
Q Consensus 114 Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 144 (542)
..|+++. ++|+ |-|-|-...|.. .|.|.|.
T Consensus 93 vtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 93 VTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 9999753 5786 999999988876 5988875
No 71
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=90.99 E-value=1.2 Score=38.64 Aligned_cols=72 Identities=8% Similarity=-0.004 Sum_probs=47.2
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|++|+| .|.+...|-.+.=+-. . +..-+++....+..... .++-||.|.
T Consensus 56 v~v~pGDTVtw--~~~d~~~Hnv~~~~~~---------~-------------~~g~~~~~~~~~~s~~~--Tfe~~G~Y~ 109 (128)
T COG3794 56 VTVKPGDTVTW--VNTDSVGHNVTAVGGM---------D-------------PEGSGTLKAGINESFTH--TFETPGEYT 109 (128)
T ss_pred EEECCCCEEEE--EECCCCCceEEEeCCC---------C-------------cccccccccCCCcceEE--EecccceEE
Confidence 67899999999 6766566654432211 1 11123333334454444 445599999
Q ss_pred EEeechhhhhcceEEEEEEe
Q 009149 493 LRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 493 ~HCHil~H~d~GMm~~~~V~ 512 (542)
|.|-. |..+||-..+.|.
T Consensus 110 Y~C~P--H~~~gM~G~IvV~ 127 (128)
T COG3794 110 YYCTP--HPGMGMKGKIVVG 127 (128)
T ss_pred EEecc--CCCCCcEEEEEeC
Confidence 99988 8999999999885
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=89.92 E-value=1.3 Score=41.93 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=57.3
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.++.|+.|++.+.+.+ ..|.| +|-+-+. ..| +-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~D-V~Hsf-------~ip~~~~-----------------k~d---a~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD-VIHSF-------WVPELGG-----------------KID---AIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc-hhhcc-------cccccCc-----------------eEE---ecCCcEEEEEEEeCCCEE
Confidence 3478999999999999875 44544 4433221 123 447888999999999999
Q ss_pred eEEEeechh-hhhcceEEEEEEecCCc
Q 009149 491 WNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
+...|-..- ..|..|...+.|+++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 999999843 23578888999887654
No 73
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=87.55 E-value=10 Score=34.73 Aligned_cols=94 Identities=9% Similarity=-0.097 Sum_probs=57.4
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCC-CCcC---CCCCCC--CCCCcceEEEeCCCCEEEEEEEe
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQW-TSAS---RNQYNL--RDAVARVTVQVYPKSWSAIYIAL 485 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~-~~~~---~~~~~~--~~p~~rDTv~vpp~g~~~irf~a 485 (542)
.+-++.|-.|.++|.|.....| .+-|+..+.... .+.. ....+. ..+.--..=-+..|......|..
T Consensus 86 tIyiPaGw~V~V~f~N~e~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~ 158 (195)
T TIGR03094 86 TIYLPAGWNVYVTFTNYESLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWND 158 (195)
T ss_pred EEEEeCCCEEEEEEEcCCCCCc-------cEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEecc
Confidence 4678999999999999987754 555555433110 0000 000000 00000011122345565566666
Q ss_pred cCceeeEEEeechhhhhcceEEEEEEe
Q 009149 486 DNVGMWNLRSESWARQYLGQQFYLRVY 512 (542)
Q Consensus 486 dnpG~w~~HCHil~H~d~GMm~~~~V~ 512 (542)
--||.+.+=|=+.-|...||-..+.|-
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVS 185 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVS 185 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEe
Confidence 789999999999999999999988873
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.59 E-value=5.1 Score=37.84 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=55.3
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh-hhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKA 136 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (542)
...|.+..|+.|++++++.. . + ||..++. . |+ +.-+.||..-+..|+ ++++|+|...|..= +...
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D-V---~--Hsf~ip~---~-~~---k~da~PG~~~~~~~~-~~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD-V---I--HSFWVPE---L-GG---KIDAIPGQYNALWFN-ADEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc-h---h--hcccccc---c-Cc---eEEecCCcEEEEEEE-eCCCEEEEEEehhhCCcCc
Confidence 35899999999999999862 1 1 5554321 1 11 345678999999998 58899999999852 2233
Q ss_pred cceeeEEEEeCC
Q 009149 137 AGGFGGIRILSR 148 (542)
Q Consensus 137 ~Gl~G~liV~~~ 148 (542)
..|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 569999998874
No 75
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.45 E-value=2.8 Score=40.88 Aligned_cols=79 Identities=10% Similarity=0.251 Sum_probs=57.9
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
.+.+.++.|+.|++.+...+ ..| .|+|-+-+. -+.+-||-...+.++++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D-ViH-------sF~IP~l~~--------------------k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD-VIH-------SFWIPQLGG--------------------KIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEech-hce-------eEEecCCCc--------------------eeeecCCceEEEEEecCCCe
Confidence 34578999999999998874 534 555554432 13344678889999999999
Q ss_pred eeEEEeechh-hhhcceEEEEEEecCCc
Q 009149 490 MWNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
.|-.+|+.+- .-|..|-+.+.|+++++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999975 44556667777877766
No 76
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=85.96 E-value=8.3 Score=30.68 Aligned_cols=66 Identities=14% Similarity=0.236 Sum_probs=37.6
Q ss_pred EEEEEEEEcCCCceEEEEEe-cc--eeEEEeecCcccc------e--eeeeeEEEcCCceEEEEEEeCCC---CcceEEE
Q 009149 211 TYRLRISNVGLQNSLNFRIQ-NH--KMKLVEVEGTHTL------Q--TTYSSLDVHVGQSYSVLVTADQP---ARDYYIV 276 (542)
Q Consensus 211 ~~rlRliNa~~~~~~~~~i~-gh--~~~via~DG~~~~------p--~~~~~l~l~pgeR~dv~v~~~~~---~g~y~i~ 276 (542)
...|++.|.+. ..+.|.+. |+ .|.|...+|..+- . .......|.|||...+-.+.+.. +|.|.+.
T Consensus 3 ~~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 35678888887 34456653 44 4445555666652 1 23578999999999999988863 7999886
Q ss_pred E
Q 009149 277 V 277 (542)
Q Consensus 277 ~ 277 (542)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 4
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=84.61 E-value=1.5 Score=45.38 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=53.1
Q ss_pred ceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh-hhhhc
Q 009149 59 PDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKAA 137 (542)
Q Consensus 59 P~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~ 137 (542)
-+..|++||.|.+.++|-......+| |.-.. .-|+- ..+.|-++-.|.|.. +.+|.+||.|--. .-+..
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~p----~~~v~---~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVIP----NYGVN---MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeeec----cCceE---EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 36788999999998888765544444 33211 22221 457888999999994 7899999998643 33334
Q ss_pred ceeeEEEEe
Q 009149 138 GGFGGIRIL 146 (542)
Q Consensus 138 Gl~G~liV~ 146 (542)
-|+|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 477888876
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.78 E-value=8.1 Score=37.67 Aligned_cols=78 Identities=8% Similarity=-0.044 Sum_probs=59.0
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecch-hhhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSL-AFHKA 136 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 136 (542)
...|.+..|.+|++.++-. +.-++....++.. |.-.-||...+..++ ++++|+|.-+|+. -+...
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~-~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLT-ANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEe-cCCCeEEEEEcHhhcCCCc
Confidence 3899999999999999876 4444444433311 344678999999999 5899999999995 35666
Q ss_pred cceeeEEEEeCCC
Q 009149 137 AGGFGGIRILSRP 149 (542)
Q Consensus 137 ~Gl~G~liV~~~~ 149 (542)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999854
No 79
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.72 E-value=9.3 Score=32.84 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred ceEEEec-CcEEEEEEEEcCCCc----eEEEEEe-cceeEEEee-------cCcccce----eeeeeEEEcCCceEEEEE
Q 009149 202 AAFNVEQ-GKTYRLRISNVGLQN----SLNFRIQ-NHKMKLVEV-------EGTHTLQ----TTYSSLDVHVGQSYSVLV 264 (542)
Q Consensus 202 ~~~~v~~-G~~~rlRliNa~~~~----~~~~~i~-gh~~~via~-------DG~~~~p----~~~~~l~l~pgeR~dv~v 264 (542)
..|+|++ ++.+++.|-|.|... .|++-|- ...++-|+. |-.++++ +-..+=.|++||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5789998 488999999998643 2344331 123333333 3344543 224566799999999999
Q ss_pred EeCC-CCc-ceEEEEe
Q 009149 265 TADQ-PAR-DYYIVVS 278 (542)
Q Consensus 265 ~~~~-~~g-~y~i~~~ 278 (542)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9864 355 6999986
No 80
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=78.13 E-value=5.1 Score=38.57 Aligned_cols=76 Identities=8% Similarity=0.210 Sum_probs=56.9
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|+.|++.+...+ ..| +|+|-+-+. .+|.+ ||....+.|+++.||.|.
T Consensus 141 l~lP~g~pV~~~ltS~D-ViH-------SF~VP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~y~ 192 (226)
T TIGR01433 141 IAFPVNTPINFKITSNS-VMN-------SFFIPQLGS-----------------QIYAM---AGMQTKLHLIANEPGVYD 192 (226)
T ss_pred EEEECCCEEEEEEEECc-hhh-------hhhhhhcCC-----------------eeecC---CCceEEEEEEeCCCEEEE
Confidence 67999999999999885 434 566655532 34555 678889999999999999
Q ss_pred EEeechh-hhhcceEEEEEEecCCc
Q 009149 493 LRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 493 ~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
-.|--+- -.|..|...+.|+++++
T Consensus 193 g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 193 GISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEchhhcCcCccCCeEEEEEECHHH
Confidence 9998653 23567888888877654
No 81
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=76.04 E-value=7.9 Score=32.53 Aligned_cols=68 Identities=12% Similarity=0.292 Sum_probs=46.1
Q ss_pred EEEEEeCCCCCceEEeccccCCCCCCCC-CCcccCCCCCCCCeEEEEEEECCCceeeeEecchhhhhhcceeeEEEEeC
Q 009149 70 IINVFNSLDEPFLLSWNGIQNRRNSFED-GVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLAFHKAAGGFGGIRILS 147 (542)
Q Consensus 70 ~i~v~N~l~~~~~iH~HG~~~~~~~~~D-Gv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 147 (542)
.|.++|.|.....|..|=- +. .-| |+ ..+.||+++.++|.. +--|+--|.|+... ....-..-+.|..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~--S~--d~Dlg~----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK--SK--DDDLGW----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCCCCCeEEEEee--CC--CccCCC----EECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 4899999977777777743 21 122 33 458899999999984 55688888999776 1111356666655
No 82
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=75.37 E-value=10 Score=36.64 Aligned_cols=79 Identities=8% Similarity=0.087 Sum_probs=57.0
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
.+.+.+|.|+.|++.+.+.+ ..| .|+|-+-+. . +.+-||....+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViH-------sf~ip~~~~-----------------k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIH-------SWTVPSLGV-----------------K---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-ccc-------ceeccccCc-----------------e---eECCCCcceeEEEEeCCCE
Confidence 34578999999999999975 444 444443321 1 3334788888999999999
Q ss_pred eeEEEeechhhh-hcceEEEEEEecCCc
Q 009149 490 MWNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 490 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
.+...|.-+-.. |..|-..++|+++++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHHH
Confidence 999999987544 666777888877654
No 83
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=71.07 E-value=19 Score=32.51 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=53.1
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.++.|..+++.+...+ ..|.|.+- +-+. ..|.+ ||....+.|.++.||.|
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP-------~lgv-----------------K~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVP-------SLGI-----------------KADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeecc-------ccCc-----------------eeecc---CCceEEEEEecCCCeEE
Confidence 356899999999888775 44655543 3321 22333 67777889999999999
Q ss_pred EEEeechh-hhhcceEEEEEEecCCc
Q 009149 492 NLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 492 ~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
...|.-+- --|..|-..+.|+.+++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~~ 151 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPEA 151 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHHH
Confidence 99999763 23445777777776554
No 84
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=70.60 E-value=5 Score=33.86 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=39.9
Q ss_pred EEEEeCCCCCc---eEEeccccCCC---CCCCCCCcccCCCCCCCCeEEEEEEEC--CCceeeeEecchhhhhhcceeeE
Q 009149 71 INVFNSLDEPF---LLSWNGIQNRR---NSFEDGVYGTTCPIPPGKNFTYILQVK--DQIGSFYYFPSLAFHKAAGGFGG 142 (542)
Q Consensus 71 i~v~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~Y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~ 142 (542)
|++.|....+. +=|||=....+ .-.-+||-|-|.-|.||++|+|.=-.+ .+.|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~--------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT--------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce--------------EEEE
Confidence 77778776554 56998432221 112344544588899999999964332 34666 6776
Q ss_pred EEEeCCC
Q 009149 143 IRILSRP 149 (542)
Q Consensus 143 liV~~~~ 149 (542)
+...++.
T Consensus 100 Y~M~~e~ 106 (126)
T COG2967 100 YEMIDED 106 (126)
T ss_pred EEEecCC
Confidence 6666644
No 85
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=69.71 E-value=68 Score=27.13 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=11.8
Q ss_pred EEEEEEcCCC-ceEEEEEecc
Q 009149 213 RLRISNVGLQ-NSLNFRIQNH 232 (542)
Q Consensus 213 rlRliNa~~~-~~~~~~i~gh 232 (542)
++|++|++.. ..+.+.++|.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~ 23 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGT 23 (122)
T ss_pred EEEEEEcCCCCccEEEEECCE
Confidence 5677777654 3555555443
No 86
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=68.11 E-value=12 Score=35.73 Aligned_cols=76 Identities=14% Similarity=0.329 Sum_probs=56.9
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.+|.|..|++.+...+ .. |+|+|=+-+. .+|.+ ||-...+.|+++.||.|-
T Consensus 132 l~iP~g~~v~~~ltS~D-Vi-------Hsf~vP~l~~-----------------k~dai---PG~~~~~~~~~~~~G~y~ 183 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSAD-TM-------TSFWIPQLGG-----------------QKYAM---TGMTMNWYLQADQVGTYR 183 (217)
T ss_pred EEEECCCEEEEEEECCc-hh-------hhhhchhhCc-----------------eeecC---CCceEEEEEEeCCCEEEE
Confidence 67899999999999885 33 3566654432 34655 688889999999999999
Q ss_pred EEeechh-hhhcceEEEEEEecCCc
Q 009149 493 LRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 493 ~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
-.|=-+- -.|.-|-..+.|+++++
T Consensus 184 g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 184 GRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEehhhcCccccCCeEEEEEeCHHH
Confidence 9997653 23566888888887765
No 87
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=66.55 E-value=29 Score=35.41 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.0
Q ss_pred CCCCCCCCeEEEEEEEC
Q 009149 103 TCPIPPGKNFTYILQVK 119 (542)
Q Consensus 103 q~~i~pG~~~~Y~f~~~ 119 (542)
+.||.|||+.+.+..+.
T Consensus 337 ~~pI~PGETr~v~v~aq 353 (399)
T TIGR03079 337 QSAIAPGETVEVKMEAK 353 (399)
T ss_pred CCCcCCCcceEEEEEEe
Confidence 67899999999999863
No 88
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.42 E-value=41 Score=31.56 Aligned_cols=76 Identities=9% Similarity=0.160 Sum_probs=54.8
Q ss_pred EEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceee
Q 009149 412 VMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMW 491 (542)
Q Consensus 412 ~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w 491 (542)
.+.++.|+.+++.+...+ ..|.|.+- +-+. .+|.+ ||....+.|.++.||.+
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp-------~l~~-----------------k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVP-------DLNL-----------------KMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceecc-------ccCc-----------------eeecC---CCceEEEEEEcCCCEEE
Confidence 367899999999888774 54555543 3221 23433 78888999999999999
Q ss_pred EEEeechhh-hhcceEEEEEEecCC
Q 009149 492 NLRSESWAR-QYLGQQFYLRVYTAS 515 (542)
Q Consensus 492 ~~HCHil~H-~d~GMm~~~~V~~~~ 515 (542)
-.-|.-+-- .|..|-..++|++++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 999997643 356677788887654
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=62.51 E-value=78 Score=25.24 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=40.3
Q ss_pred EEEecCcEE--EEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeE-EEcCCceEEEEEEeCC-CCcceEEEEe
Q 009149 204 FNVEQGKTY--RLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSL-DVHVGQSYSVLVTADQ-PARDYYIVVS 278 (542)
Q Consensus 204 ~~v~~G~~~--rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l-~l~pgeR~dv~v~~~~-~~g~y~i~~~ 278 (542)
-.+..|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+.+.... .+|.|.|++.
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~ 82 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVV 82 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence 345667765 577899987654444443 34466544 34444 7899999988888763 5788888775
No 90
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=60.27 E-value=64 Score=24.95 Aligned_cols=65 Identities=22% Similarity=0.349 Sum_probs=31.6
Q ss_pred EecCcEE--EEEEEEcCCCc--eEEEEEecceeEEEeecCcc--cceeeeeeEEEcCCceEEEEEEeC--C--CCcceEE
Q 009149 206 VEQGKTY--RLRISNVGLQN--SLNFRIQNHKMKLVEVEGTH--TLQTTYSSLDVHVGQSYSVLVTAD--Q--PARDYYI 275 (542)
Q Consensus 206 v~~G~~~--rlRliNa~~~~--~~~~~i~gh~~~via~DG~~--~~p~~~~~l~l~pgeR~dv~v~~~--~--~~g~y~i 275 (542)
|.+|+.. ++.+-|.+... ...+++.. -+|=. ..+.... .|.||+...+-++.. . .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3567654 67788988543 33444432 23322 1233333 789998776666653 2 4799999
Q ss_pred EEee
Q 009149 276 VVSS 279 (542)
Q Consensus 276 ~~~~ 279 (542)
....
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 91
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=59.94 E-value=33 Score=33.01 Aligned_cols=78 Identities=6% Similarity=0.028 Sum_probs=56.2
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.|++.+...+-. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL--------HSWAVPSLGL-----------------KTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECccc--------cccccccccc-----------------ceecC---CCceEEEEEecCCcEE
Confidence 456799999999999888533 4566655432 23433 6788888999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+..-|.-+-.. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~~ 218 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLKY 218 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHHH
Confidence 99999876433 556777777776653
No 92
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=59.85 E-value=37 Score=27.57 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=39.7
Q ss_pred EecCcEEEEEEE--EcCCCceEEEEEecceeEEEeecCcccceeeeeeE-EEcCCceEEEEEEeCCC--CcceEEEEee
Q 009149 206 VEQGKTYRLRIS--NVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSL-DVHVGQSYSVLVTADQP--ARDYYIVVSS 279 (542)
Q Consensus 206 v~~G~~~rlRli--Na~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l-~l~pgeR~dv~v~~~~~--~g~y~i~~~~ 279 (542)
-+|||++.||++ +... ......-....++|..-+|..+. ...+ .......++..+.+++. .|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~---~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVF---RWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEE---EEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEE---EEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 479999999998 6662 11011111223555555565432 2222 34667788888888763 5999999875
No 93
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.67 E-value=30 Score=33.44 Aligned_cols=78 Identities=8% Similarity=0.022 Sum_probs=57.7
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.|++.+...+-. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G~ 191 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPGV 191 (230)
T ss_pred ceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCceE
Confidence 446789999999999888633 5677766542 22333 6888888999999999
Q ss_pred eEEEeechhh-hhcceEEEEEEecCCc
Q 009149 491 WNLRSESWAR-QYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H-~d~GMm~~~~V~~~~~ 516 (542)
+...|.-+-- .|..|-..++|+++++
T Consensus 192 ~~g~C~e~CG~~H~~M~~~v~vv~~~~ 218 (230)
T MTH00129 192 FYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEChhhccccccCCcEEEEEECHHH
Confidence 9999987633 3667777888876654
No 94
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=59.51 E-value=58 Score=24.56 Aligned_cols=65 Identities=28% Similarity=0.305 Sum_probs=36.3
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEe
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVS 278 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~ 278 (542)
..++++.|+++++.+-+.+. ...+.+...+|..+....... -..+..-.+.+... ++|+|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 46888999998888866665 223556666654332211111 01122233334454 6899999864
No 95
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=57.55 E-value=82 Score=24.97 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCccc----CCCCCCCCeEEEEEEECCC---ceeeeE
Q 009149 60 DIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGT----TCPIPPGKNFTYILQVKDQ---IGSFYY 127 (542)
Q Consensus 60 ~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~----q~~i~pG~~~~Y~f~~~~~---~Gt~wY 127 (542)
+|+..-|++..+.|.|.-.+ .-| -|++|-+.. +..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~---~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGK---EVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT-----EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCC---EEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 56777777777777765221 122 367887654 3569999999999998643 688853
No 96
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=54.52 E-value=47 Score=32.01 Aligned_cols=78 Identities=9% Similarity=0.067 Sum_probs=55.6
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.|++.+.+.+ ..| .|+|-+-+. ..|. -||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~~~~-----------------k~da---iPG~~~~~~~~~~~~G~ 191 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAAD-VIH-------SWTVPSLGV-----------------KVDA---VPGRLNQIGFTITRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEeCC-ccc-------cccccccCc-----------------ceec---CCCceEEEEEEeCCCEE
Confidence 4467899999999999975 444 454444431 1233 36788888999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+..-|.-+-.. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 192 FYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEChhhcCcCccCceeEEEEECHHH
Confidence 99999876433 566777777776654
No 97
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.88 E-value=48 Score=31.86 Aligned_cols=79 Identities=8% Similarity=0.106 Sum_probs=56.5
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
.+.+.+|.|+.|++.+...+ ..| +|+|-+-+. .+|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViH-------sf~vP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAAD-VLH-------SWTVPSLGV-----------------KIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCc-ccc-------ceeccccCc-----------------cccCC---CCcEEEEEEEcCCCE
Confidence 34578999999999888775 534 555555432 34555 677788899999999
Q ss_pred eeEEEeechh-hhhcceEEEEEEecCCc
Q 009149 490 MWNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 490 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
.+.--|--+- --|.-|-..++|+++++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISPKF 218 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCHHH
Confidence 9999998663 23556777788776654
No 98
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.93 E-value=65 Score=31.07 Aligned_cols=79 Identities=8% Similarity=0.050 Sum_probs=56.0
Q ss_pred ceEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCce
Q 009149 410 TAVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVG 489 (542)
Q Consensus 410 ~~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 489 (542)
.+.+.+|.|+.+++.+...+-. |.|+|-+-+. ..|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDVL--------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCccc--------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 3446799999999999888633 4565555432 23433 678888889999999
Q ss_pred eeEEEeechhhh-hcceEEEEEEecCCc
Q 009149 490 MWNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 490 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
.+.--|.-+-.. |.-|-..++|+++++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHHH
Confidence 999999876444 456777777776543
No 99
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.14 E-value=58 Score=31.36 Aligned_cols=78 Identities=9% Similarity=0.114 Sum_probs=55.5
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+ ..| .|+|=+-+. .+|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViH-------sf~vp~l~~-----------------k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAAD-VIH-------SWTVPSLGV-----------------KVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCc-hhh-------heeccccCC-----------------eeecC---CCceEEEEEEEcCceE
Confidence 4467999999999888775 444 454444432 23444 6788889999999999
Q ss_pred eEEEeechh-hhhcceEEEEEEecCCc
Q 009149 491 WNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
+.--|--+- --|.-|-..++|+++++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
Confidence 999998763 33556777777776654
No 100
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.95 E-value=82 Score=30.62 Aligned_cols=78 Identities=6% Similarity=0.086 Sum_probs=56.1
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.|++.+...+ ..|.|.+ -+-+. .+|.+ ||....+.|.++.||.
T Consensus 151 n~lvlP~~~~v~~~~tS~D-ViHsf~i-------P~lgv-----------------K~Dai---PG~~n~~~~~~~~~G~ 202 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD-VLHSFAV-------PSLGL-----------------KIDAV---PGRLNQTGFFIKRPGV 202 (240)
T ss_pred ceEEEecCCEEEEEEEcCC-cccceee-------cccCc-----------------eeecC---CCcceeEEEEcCCCEE
Confidence 4577999999999988874 5455544 44331 23443 5777788999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+.-.|.-+-.. |.-|-..++|+++++
T Consensus 203 y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 203 FYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEchhhcCcCccCCeEEEEEECHHH
Confidence 99999876433 566777888877654
No 101
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=47.73 E-value=1.1e+02 Score=24.29 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=0.0
Q ss_pred ccceEEEe---cCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeE
Q 009149 57 PGPDIHSV---TNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYY 127 (542)
Q Consensus 57 pgP~i~v~---~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wY 127 (542)
+.|.+.++ ....|.|++.|.-.....+............. +..|.||++.+..|.+....|-|-+
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~~~~~~------~~~v~ag~~~~~~w~l~~s~gwYDl 74 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYGGGGPW------TYTVAAGQTVSLTWPLAASGGWYDL 74 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcCCCCCE------EEEECCCCEEEEEEeecCCCCcEEE
No 102
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.73 E-value=59 Score=31.34 Aligned_cols=78 Identities=10% Similarity=0.126 Sum_probs=54.6
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+ ..|.| +|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~D-ViHsf-------~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD-VLHSW-------AVPSLGV-----------------KMDAV---PGRLNQTTFFISRTGL 191 (229)
T ss_pred ceEEEecCeEEEEEEEECC-ccccc-------cccccCc-----------------eeecC---CCceEEEEEEcCCCEE
Confidence 4567999999999888775 54544 4433331 23444 6788888999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+..-|--+--. |.-|-..++|+++++
T Consensus 192 ~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (229)
T MTH00038 192 FYGQCSEICGANHSFMPIVIESVPFNT 218 (229)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 99999876443 445666777776554
No 103
>COG1470 Predicted membrane protein [Function unknown]
Probab=46.23 E-value=4e+02 Score=28.50 Aligned_cols=179 Identities=18% Similarity=0.270 Sum_probs=98.6
Q ss_pred EEEecCCE--EEEEEEeCC--CCCceEEeccccCC-CCCCCCCCccc-CCCCCCCCeEEEEEEECCCceeeeEecchhhh
Q 009149 61 IHSVTNDN--LIINVFNSL--DEPFLLSWNGIQNR-RNSFEDGVYGT-TCPIPPGKNFTYILQVKDQIGSFYYFPSLAFH 134 (542)
Q Consensus 61 i~v~~Gd~--v~i~v~N~l--~~~~~iH~HG~~~~-~~~~~DGv~~~-q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~~q 134 (542)
+.+.++++ +.|++.|+- +....+-.-|+.-. ...+-+|--.+ ...+.||++.+....+-. ..+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~p-----------s~n 346 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYP-----------SLN 346 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEec-----------CCC
Confidence 45556665 667778886 44555555554110 01122444334 556888888887777621 122
Q ss_pred hhcceeeEEEEeCCCCCCCCCCCCCCCeEEEEEeeeccchhhHHHhhccCCCCCCCCeEEEcCCCCCceEEEecCc--EE
Q 009149 135 KAAGGFGGIRILSRPRIPVPFPDPAGDYTVLIGDWYKSNHTDLRAHLDKGKKLPLPDGILINGRGSGAAFNVEQGK--TY 212 (542)
Q Consensus 135 ~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~v~~G~--~~ 212 (542)
..-|.|-..|+-.... .+ .++.++.+.---. .....-+-||. ..+++.+|+ ..
T Consensus 347 a~pG~Ynv~I~A~s~s---~v---~~e~~lki~~~g~----------------~~~~v~l~~g~---~~lt~taGee~~i 401 (513)
T COG1470 347 ATPGTYNVTITASSSS---GV---TRELPLKIKNTGS----------------YNELVKLDNGP---YRLTITAGEEKTI 401 (513)
T ss_pred CCCCceeEEEEEeccc---cc---eeeeeEEEEeccc----------------cceeEEccCCc---EEEEecCCccceE
Confidence 2334444444443211 12 3454544421100 01112234444 347777875 57
Q ss_pred EEEEEEcCCCc--eEEEEEecceeEEEeecCcccceeeeeeEEEcCCceE--EEEEEeCC--CCcceEEEEeeeec
Q 009149 213 RLRISNVGLQN--SLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSY--SVLVTADQ--PARDYYIVVSSRFT 282 (542)
Q Consensus 213 rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~--dv~v~~~~--~~g~y~i~~~~~~~ 282 (542)
+++|-|.|+.. .+.+.+++-.=|=+.+|+..+. .|.||+|- ++.++++. .+|+|.+......+
T Consensus 402 ~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~-------sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 402 RISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIP-------SLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred EEEEEecCCCccceeeEEecCCccceEEECccccc-------ccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 99999999654 5567777766677777876433 35677764 44555553 47899998876544
No 104
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.82 E-value=76 Score=30.54 Aligned_cols=78 Identities=9% Similarity=0.025 Sum_probs=56.3
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+-. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi--------Hsf~vP~lg~-----------------K~Dav---PG~~n~~~~~~~~~G~ 191 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDVL--------HSWAVPSLGV-----------------KTDAV---PGRLNQTSFITTRPGV 191 (227)
T ss_pred ceEEEecCceEEEEEEecchh--------hcccccccCc-----------------eeEec---CCceEEEEEEEcccce
Confidence 456799999999999887533 4666655432 23443 6788889999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+.--|--+-.. |.-|-..++|+++++
T Consensus 192 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (227)
T MTH00117 192 FYGQCSEICGANHSFMPIVVESVPLKH 218 (227)
T ss_pred EEEEeccccccCccCCeEEEEEcCHHH
Confidence 99999876433 556667777776554
No 105
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=45.65 E-value=75 Score=30.76 Aligned_cols=78 Identities=6% Similarity=0.068 Sum_probs=55.2
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.|++.+.+.+ ..| .|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 144 n~lvlP~~~~v~~~itS~D-ViH-------sf~vp~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 195 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAAD-VLH-------SFAVPSLSV-----------------KIDAV---PGRLNQTSFFIKRPGV 195 (234)
T ss_pred eEEEEecCcEEEEEEEeCc-hhc-------cccccccCc-----------------eeEcc---CCceEeEEEEeCCCEE
Confidence 4567999999999999874 434 455544431 23333 6777788999999999
Q ss_pred eEEEeechhh-hhcceEEEEEEecCCc
Q 009149 491 WNLRSESWAR-QYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H-~d~GMm~~~~V~~~~~ 516 (542)
+---|.-+=- .|.-|-..++|+++++
T Consensus 196 y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 196 FYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEChhhcCcccccCeeEEEEECHHH
Confidence 9999987633 3556777777776654
No 106
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=44.62 E-value=2.2e+02 Score=25.12 Aligned_cols=82 Identities=26% Similarity=0.290 Sum_probs=54.1
Q ss_pred CeEEEcCCCCCceEEEe-cCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceee-------eeeEEEcCCceE-E
Q 009149 191 DGILINGRGSGAAFNVE-QGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTT-------YSSLDVHVGQSY-S 261 (542)
Q Consensus 191 ~~~liNG~~~~~~~~v~-~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~~~l~l~pgeR~-d 261 (542)
|.-.||.-+. +...-. --.+|.|.+-|.|... +.++.-.++|+ +||..+.|.. .+.+.|.|||-. +
T Consensus 51 dFaIIndPg~-i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~e 125 (154)
T COG3354 51 DFAIINDPGQ-IPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGRE 125 (154)
T ss_pred cEEEecCCCC-CccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeE
Confidence 4556776665 222222 1257999999999854 46777778776 8998776533 357789999988 6
Q ss_pred EEEEeCCCCcceEEEEe
Q 009149 262 VLVTADQPARDYYIVVS 278 (542)
Q Consensus 262 v~v~~~~~~g~y~i~~~ 278 (542)
+.+.-. ..|.-.+...
T Consensus 126 v~vn~~-lSGyhri~V~ 141 (154)
T COG3354 126 VTVNEA-LSGYHRIVVS 141 (154)
T ss_pred EEeccC-CCcceEEEEE
Confidence 666554 3465556554
No 107
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=44.11 E-value=57 Score=33.43 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=0.0
Q ss_pred EEEEEEEEEecCCCeeeEE---EEEcCCCccceEEEecCCEEEEEEEeCC-------CCCceEEeccccCCCCCCCCCCc
Q 009149 31 FNWNVTYGDIYPLGVRQRG---ILINWQFPGPDIHSVTNDNLIINVFNSL-------DEPFLLSWNGIQNRRNSFEDGVY 100 (542)
Q Consensus 31 ~~l~i~~~~~~~~G~~~~~---~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l-------~~~~~iH~HG~~~~~~~~~DGv~ 100 (542)
++..+..+.....|++..+ .+=||.-| +++.+=.+-.|++.|.. .....+---|+.+...
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~l~VtN~g~~p---v~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~------- 318 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMTLTVTNNGDSP---VRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDN------- 318 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEEEEEEEESSS----BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES---------
T ss_pred eEEEEeccEEecCCcEEEEEEEEEcCCCCc---eEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCC-------
Q ss_pred ccCCCCCCCCeEEEEEEECCCc------------------eeeeEecchhhhhhcceeeEEE
Q 009149 101 GTTCPIPPGKNFTYILQVKDQI------------------GSFYYFPSLAFHKAAGGFGGIR 144 (542)
Q Consensus 101 ~~q~~i~pG~~~~Y~f~~~~~~------------------Gt~wYH~H~~~q~~~Gl~G~li 144 (542)
.||+|||+.+.+..+.+.+ |.+++.+-.+..+..-+.|++|
T Consensus 319 ---~pI~PGETrtl~V~a~dA~WeveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I~gpvI 377 (381)
T PF04744_consen 319 ---SPIAPGETRTLTVEAQDAAWEVERLSDLIYDPDSRFGGLLFFFDASGNRYISEIAGPVI 377 (381)
T ss_dssp ---S-B-TT-EEEEEEEEE-HHHHHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEEEEE-E
T ss_pred ---CCcCCCceEEEEEEeehhHHHHhhhhhhhcCcccceeEEEEEEcCCCCEEEEeccCccc
No 108
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=43.97 E-value=1.6e+02 Score=25.34 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=40.8
Q ss_pred eEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCccc-------ceeeeeeEEEcCCceEEEEEEeCC
Q 009149 203 AFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT-------LQTTYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 203 ~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~~~l~l~pgeR~dv~v~~~~ 268 (542)
.|.+.....|+|++-.-+ ..+|.|+|..+ |..++..- ......++.|..|++|+|.|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 356666678999998333 46778888764 55555432 345567888999999999998764
No 109
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=43.61 E-value=74 Score=33.08 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=53.9
Q ss_pred eEEEcCC-CCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCC
Q 009149 192 GILINGR-GSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPA 270 (542)
Q Consensus 192 ~~liNG~-~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~ 270 (542)
.++|+.. .....++|++|+ ++|.+.|.+.... . |.++ +|..+ ....=.|+||....+.+.+ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~-E-------fe~~--~~~~v---v~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKAL-E-------WEIL--KGVMV---VEERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCcc-e-------EEee--ccccc---cccccccCCCCceEEEEec--CC
Confidence 3455553 345789999995 9999999997542 3 3333 22211 0012278999888888777 48
Q ss_pred cceEEEEeeeecCCccceEEEEEecCC
Q 009149 271 RDYYIVVSSRFTSTVLTTTGILHYSNS 297 (542)
Q Consensus 271 g~y~i~~~~~~~~~~~~~~ail~y~~~ 297 (542)
|+|.+.|... ....+.+.+.|.
T Consensus 97 GtY~~~C~~~-----~~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL-----TNPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC-----CCCCceEEEeCC
Confidence 9999999532 122556666654
No 110
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.23 E-value=69 Score=31.56 Aligned_cols=78 Identities=6% Similarity=0.051 Sum_probs=56.0
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|..+++.+...+ ..| +|+|=+-+. .+|.+ ||..-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lgv-----------------K~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLH-------SWTVPSLAV-----------------KMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccc-------ceecccccC-----------------cccCC---CCceeeEEEEcCCcEE
Confidence 4567999999999888775 434 555555432 23444 5667788899999999
Q ss_pred eEEEeechh-hhhcceEEEEEEecCCc
Q 009149 491 WNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
+.-.|.-+- --|..|-..++|+++++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 999999763 34677888888877654
No 111
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=43.16 E-value=28 Score=30.18 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=23.6
Q ss_pred EEEEeCCCCCc---eEEeccccCCC---CCCCCCCcccCCCCCCCCeEEEE
Q 009149 71 INVFNSLDEPF---LLSWNGIQNRR---NSFEDGVYGTTCPIPPGKNFTYI 115 (542)
Q Consensus 71 i~v~N~l~~~~---~iH~HG~~~~~---~~~~DGv~~~q~~i~pG~~~~Y~ 115 (542)
|++.|..+++. +=||-=....+ .-.-+||-|-|.-|.||++|.|.
T Consensus 35 ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 35 ITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred EEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEEe
Confidence 66677665543 34663111100 01234444446669999987774
No 112
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=42.72 E-value=99 Score=26.08 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=27.3
Q ss_pred EEEEEEEEcCCCc-eEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeC
Q 009149 211 TYRLRISNVGLQN-SLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD 267 (542)
Q Consensus 211 ~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~ 267 (542)
.|+++|+|.+... .+.+.++|.+ |..+. .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEEE
Confidence 5899999999754 6677776632 21111 134678889998877766543
No 113
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=42.27 E-value=58 Score=33.02 Aligned_cols=76 Identities=8% Similarity=0.145 Sum_probs=54.7
Q ss_pred EeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCceeeE
Q 009149 413 MGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGMWN 492 (542)
Q Consensus 413 ~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~ 492 (542)
+.++.|..|++.+...+-+ | +|+|-+-+. ..|.+ ||-...+.|.+|.||.|.
T Consensus 153 L~iP~g~pV~f~lTS~DVi-H-------SF~IP~Lg~-----------------K~dam---PG~~n~l~~~a~~~G~Y~ 204 (315)
T PRK10525 153 IAFPANVPVYFKVTSNSVM-N-------SFFIPRLGS-----------------QIYAM---AGMQTRLHLIANEPGTYD 204 (315)
T ss_pred EEEecCCEEEEEEEEchhh-h-------hhhhhhhCC-----------------eeecC---CCceeEEEEEcCCCEEEE
Confidence 6789999999999988632 3 566655442 23433 678889999999999999
Q ss_pred EEeechh-hhhcceEEEEEEec-CCc
Q 009149 493 LRSESWA-RQYLGQQFYLRVYT-AST 516 (542)
Q Consensus 493 ~HCHil~-H~d~GMm~~~~V~~-~~~ 516 (542)
-.|-..- .-+..|.+.+.|+. +++
T Consensus 205 G~CaEyCG~gHs~M~f~v~v~~~~~~ 230 (315)
T PRK10525 205 GISASYSGPGFSGMKFKAIATPDRAE 230 (315)
T ss_pred EEChhhcCccccCCeEEEEEECCHHH
Confidence 9998763 33566777777763 444
No 114
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.37 E-value=1.6e+02 Score=27.53 Aligned_cols=75 Identities=16% Similarity=-0.002 Sum_probs=49.4
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh-hhhhcc
Q 009149 60 DIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKAAG 138 (542)
Q Consensus 60 ~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~G 138 (542)
.+++..|.+|+++++-. +.-++....++. . +.-.-||..-...|+ ++++|+|.--|..- +.....
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~----~--------k~d~~PG~~~~~~~~-~~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLN----L--------KMDAIPGRINHLFFC-PDRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccC----c--------eeecCCCceEEEEEE-cCCCEEEEEEeehhhCcCccc
Confidence 48888899988888765 222222222221 1 233458999888888 58899999999842 333445
Q ss_pred eeeEEEEeCC
Q 009149 139 GFGGIRILSR 148 (542)
Q Consensus 139 l~G~liV~~~ 148 (542)
|.+.+.|.++
T Consensus 183 M~~~v~v~~~ 192 (194)
T MTH00047 183 MPIVIEVVDV 192 (194)
T ss_pred CcEEEEEEcC
Confidence 8888888764
No 115
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.74 E-value=89 Score=30.17 Aligned_cols=78 Identities=6% Similarity=0.004 Sum_probs=55.9
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+ ..| +|+|=+-+. ..|.+ ||-...+.|.++.||.
T Consensus 143 n~l~lP~~~~v~~~itS~D-ViH-------Sf~vP~lg~-----------------K~Dav---PGr~n~~~~~~~~~G~ 194 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSD-VIH-------SWALPSLSI-----------------KMDAM---SGILSTLCYSFPMPGV 194 (231)
T ss_pred CceEeecCcEEEEEEEeCc-ccc-------cccccccCc-----------------eeecc---CCceEEEEEEEcCceE
Confidence 3457999999999998875 444 444444432 34554 5777788999999999
Q ss_pred eEEEeechh-hhhcceEEEEEEecCCc
Q 009149 491 WNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
+.--|--+= --|..|-..++|+++++
T Consensus 195 y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 195 FYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEehhhcCcCccCCEEEEEEECHHH
Confidence 999998653 33567888888877654
No 116
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.27 E-value=87 Score=30.15 Aligned_cols=78 Identities=6% Similarity=0.056 Sum_probs=55.5
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+ .. |.|+|-+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-Vi-------Hsf~vP~lg~-----------------k~da~---PG~~n~~~~~~~~~G~ 191 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED-VL-------HSWAVPSLGI-----------------KTDAI---PGRLNQTSFIASRPGV 191 (228)
T ss_pred ceEEEecCCEEEEEEEecc-cc-------ccccccccCc-----------------eEEcc---CCcceeEEEEeCCcEE
Confidence 4567999999999998875 33 4555554432 23433 6777788999999999
Q ss_pred eEEEeechhhh-hcceEEEEEEecCCc
Q 009149 491 WNLRSESWARQ-YLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~H~-d~GMm~~~~V~~~~~ 516 (542)
+.--|.-+-.. |..|-..++|+++++
T Consensus 192 ~~g~C~e~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00076 192 YYGQCSEICGANHSFMPIVVEATPLNN 218 (228)
T ss_pred EEEEChhhcCccccCCceEEEEeCHHH
Confidence 99999876433 566777777776544
No 117
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=39.78 E-value=1.9e+02 Score=24.69 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=36.7
Q ss_pred EEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCccc-ceeeeeeEEEcCCceEEEEEEeCCC
Q 009149 204 FNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHT-LQTTYSSLDVHVGQSYSVLVTADQP 269 (542)
Q Consensus 204 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~p~~~~~l~l~pgeR~dv~v~~~~~ 269 (542)
|++.....|+|.+... ...++.|+|.. |+..++..- .+.....+.|..|++|.|.|...+.
T Consensus 52 i~~~~~G~y~f~~~~~---~~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 52 LKPPEDGEYTFSITSD---DGARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EECCCCccEEEEEEcC---CcEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 4555555789988433 34577888763 344333221 1233456888888888888877543
No 118
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.60 E-value=81 Score=30.31 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=55.0
Q ss_pred eEEeccCCcEEEEEEEcCCCCCCCeeecCcceEEEeecCCCCCCcCCCCCCCCCCCcceEEEeCCCCEEEEEEEecCcee
Q 009149 411 AVMGADYRAFIEIVFQNDEDIIQSYHLNGYQFWVVGMDGGQWTSASRNQYNLRDAVARVTVQVYPKSWSAIYIALDNVGM 490 (542)
Q Consensus 411 ~~~~~~~g~~v~~~i~N~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~ 490 (542)
+.+.+|.|+.+++.+...+ ..|. |+|=+-+. ..|.+ ||....+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~lg~-----------------k~dai---PG~~n~~~~~~~~~G~ 191 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSAD-VLHS-------WTLPSLGL-----------------KMDAV---PGRLNQLAFLSSRPGS 191 (225)
T ss_pred ceEEEecCCEEEEEEEeCC-hhhc-------cccccccc-----------------cccCC---CCeEEEEEEEcCCCEE
Confidence 4567999999999988875 4444 44444332 23443 6777888999999999
Q ss_pred eEEEeechh-hhhcceEEEEEEecCCc
Q 009149 491 WNLRSESWA-RQYLGQQFYLRVYTAST 516 (542)
Q Consensus 491 w~~HCHil~-H~d~GMm~~~~V~~~~~ 516 (542)
+---|.-+- --|.-|-..++|+++++
T Consensus 192 ~~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (225)
T MTH00168 192 FYGQCSEICGANHSFMPIVVEFVPWET 218 (225)
T ss_pred EEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 999998763 23556777777776543
No 119
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=38.92 E-value=82 Score=23.58 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=27.5
Q ss_pred EEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEE
Q 009149 204 FNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYS 261 (542)
Q Consensus 204 ~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~d 261 (542)
+++.+|+..+||.-.. ..+.+.+...++.. +|. .+-..|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 5677888888885432 23677777777754 442 2333455555543
No 120
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.12 E-value=2.2e+02 Score=22.94 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=36.7
Q ss_pred EEecCcEE--EEEEEEcCCCceEEEEEe--c---ceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeC-C-CCcceEE
Q 009149 205 NVEQGKTY--RLRISNVGLQNSLNFRIQ--N---HKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTAD-Q-PARDYYI 275 (542)
Q Consensus 205 ~v~~G~~~--rlRliNa~~~~~~~~~i~--g---h~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~-~-~~g~y~i 275 (542)
.+..|++| .+.|.|.|... .+|++. . ..|.+ .+ ..-.|+||+..++.|.+. . +.|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 34566666 68999999743 355543 2 11222 11 233599999999999987 3 4566654
Q ss_pred E
Q 009149 276 V 276 (542)
Q Consensus 276 ~ 276 (542)
.
T Consensus 83 ~ 83 (102)
T PF14874_consen 83 S 83 (102)
T ss_pred E
Confidence 3
No 121
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=36.26 E-value=2.5e+02 Score=27.06 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=30.7
Q ss_pred ceEEEecCcEEEEEEEEcCCCc-eEEEEEecceeEEEeecCcccc
Q 009149 202 AAFNVEQGKTYRLRISNVGLQN-SLNFRIQNHKMKLVEVEGTHTL 245 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~-~~~~~i~gh~~~via~DG~~~~ 245 (542)
..+-+++| +|.||+|..+-.. .--+.+-+.-+.++|.|+.+.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytq 137 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQ 137 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeE
Confidence 56888997 8999999876322 2223344566889999999975
No 122
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=35.48 E-value=2e+02 Score=27.45 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=61.9
Q ss_pred CCCeeeEEEEEcCCCccceEEEecCCEEEEEEEeCCCCC-----ceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEE
Q 009149 42 PLGVRQRGILINWQFPGPDIHSVTNDNLIINVFNSLDEP-----FLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYIL 116 (542)
Q Consensus 42 ~~G~~~~~~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~~-----~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f 116 (542)
++|..--.+++.|.+---.|.|..|..+++++.=+.+.+ .+--||+. ..++-++....+|
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe~ 144 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIEF 144 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEEe
Confidence 344443345666666556899999999999998886433 23344443 3366789999999
Q ss_pred EECCCceeeeEecchhhhhhcceeeEEEEeCCCC
Q 009149 117 QVKDQIGSFYYFPSLAFHKAAGGFGGIRILSRPR 150 (542)
Q Consensus 117 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 150 (542)
+ +.+.|+|-+-|-.. -|.|.++|+.-..
T Consensus 145 T-~~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 145 T-PISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred c-cccccchhhhcchh-----hccCeeEEEecCC
Confidence 9 78999998887643 2789999998543
No 123
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=34.64 E-value=1.4e+02 Score=25.40 Aligned_cols=83 Identities=18% Similarity=0.276 Sum_probs=45.2
Q ss_pred EEEcCCCCCceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCccccee----eeeeEEEcCCceEEEEEEeCC
Q 009149 193 ILINGRGSGAAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQT----TYSSLDVHVGQSYSVLVTADQ 268 (542)
Q Consensus 193 ~liNG~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~----~~~~l~l~pgeR~dv~v~~~~ 268 (542)
.++|-.+. +.-.+..|+.+++++-=......-.+. -.+.+...+|..+--. ....+....++++.+.++++.
T Consensus 19 ~i~~~~g~-~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~ 94 (142)
T PF14524_consen 19 RILDSDGE-PTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPK 94 (142)
T ss_dssp EEEETTEE-S-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE-
T ss_pred EEEeCCCC-EeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcC
Confidence 34443332 444567888888887655544333322 2455666677655321 123455555899999999875
Q ss_pred --CCcceEEEEee
Q 009149 269 --PARDYYIVVSS 279 (542)
Q Consensus 269 --~~g~y~i~~~~ 279 (542)
.+|.|.+...-
T Consensus 95 ~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 95 PLNPGEYSISVGL 107 (142)
T ss_dssp -B-SEEEEEEEEE
T ss_pred ccCCCeEEEEEEE
Confidence 58999998875
No 124
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=32.83 E-value=32 Score=28.40 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=26.1
Q ss_pred EEEcCCCccceEEEecCCEEEEEEEeCCCC
Q 009149 50 ILINWQFPGPDIHSVTNDNLIINVFNSLDE 79 (542)
Q Consensus 50 ~~~Ng~~pgP~i~v~~Gd~v~i~v~N~l~~ 79 (542)
..+||+.--|.=.|+.||.|.|++.|.+-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 478999888999999999999999998643
No 125
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=30.94 E-value=58 Score=28.92 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.2
Q ss_pred eCCCCEEEEEEEe-cCc---eeeEEEeech
Q 009149 473 VYPKSWSAIYIAL-DNV---GMWNLRSESW 498 (542)
Q Consensus 473 vpp~g~~~irf~a-dnp---G~w~~HCHil 498 (542)
|+||..+.|.++. .|| |.|.|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 5789999999954 576 9999999764
No 126
>PRK13202 ureB urease subunit beta; Reviewed
Probab=30.33 E-value=1.5e+02 Score=24.57 Aligned_cols=63 Identities=13% Similarity=0.139 Sum_probs=39.6
Q ss_pred eEEEecC--cEEEEEEEEcCCCceEEEEEecceeEE--------EeecCcccceeeeeeEEEcCCceEEEEEEe
Q 009149 203 AFNVEQG--KTYRLRISNVGLQNSLNFRIQNHKMKL--------VEVEGTHTLQTTYSSLDVHVGQSYSVLVTA 266 (542)
Q Consensus 203 ~~~v~~G--~~~rlRliNa~~~~~~~~~i~gh~~~v--------ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~ 266 (542)
.+++.+| ++.+|++.|.|. +.+.+.-|-|-+++ -+.=|..+.=..-.++...||+.-+|.+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4788888 478999999998 55555555554433 112222222223457888888888887653
No 127
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.94 E-value=2.6e+02 Score=26.89 Aligned_cols=76 Identities=12% Similarity=-0.072 Sum_probs=50.8
Q ss_pred cceEEEecCCEEEEEEEeCCCCCceEEeccccCCCCCCCCCCcccCCCCCCCCeEEEEEEECCCceeeeEecchh-hhhh
Q 009149 58 GPDIHSVTNDNLIINVFNSLDEPFLLSWNGIQNRRNSFEDGVYGTTCPIPPGKNFTYILQVKDQIGSFYYFPSLA-FHKA 136 (542)
Q Consensus 58 gP~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~~~~~~~~DGv~~~q~~i~pG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (542)
...|.+..|.+|++.+++.. .- |+..++. -|+ +.-.-||..-...|++ +++|+|+-.|..- +...
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-Vi-----Hsf~ip~----~~~---k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VI-----HSWTVPS----LGV---KVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-cc-----cceeccc----cCc---eeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 46789999999999999852 22 4443321 111 2335689888888884 7899999988842 2333
Q ss_pred cceeeEEEEeC
Q 009149 137 AGGFGGIRILS 147 (542)
Q Consensus 137 ~Gl~G~liV~~ 147 (542)
..|.+.++|.+
T Consensus 205 ~~M~~~v~v~~ 215 (228)
T MTH00140 205 SFMPIVVEAVP 215 (228)
T ss_pred CCCeEEEEEEC
Confidence 44777777776
No 128
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=29.83 E-value=77 Score=22.27 Aligned_cols=40 Identities=5% Similarity=-0.012 Sum_probs=29.7
Q ss_pred CCCcceE-EEeCCCCEEEEEEEecCceeeEEEeechhhhhc
Q 009149 464 DAVARVT-VQVYPKSWSAIYIALDNVGMWNLRSESWARQYL 503 (542)
Q Consensus 464 ~p~~rDT-v~vpp~g~~~irf~adnpG~w~~HCHil~H~d~ 503 (542)
.|..+-+ +..+.|+...++++...-..+=+||..+.|...
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 4444443 334568888888888888999999999988753
No 129
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.58 E-value=1.7e+02 Score=28.11 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=42.6
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++-.... .|.|.+.+...+ +..-||..-.+.+.++ .+|.|+..|+..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLGVK----------------VDAVPGRLNQIGFTIT-RPGVFYGQCSEI 199 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccCcc----------------eecCCCceEEEEEEeC-CCEEEEEEChhh
Confidence 46778899999998887554 455555544332 2334788888888887 799999998753
No 130
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=27.40 E-value=1.5e+02 Score=28.43 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=40.1
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++--... .|.|.+..- .-....-||..-.+-++++ ++|.|...|...
T Consensus 139 nel~lP~g~pV~~~ltS~DV--iHSF~VP~l----------------~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~ 198 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSV--MNSFFIPQL----------------GSQIYAMAGMQTKLHLIAN-EPGVYDGISANY 198 (226)
T ss_pred ceEEEECCCEEEEEEEECch--hhhhhhhhc----------------CCeeecCCCceEEEEEEeC-CCEEEEEEchhh
Confidence 35777888888887765544 334444322 2223344788888888888 799999999754
No 131
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.29 E-value=3e+02 Score=24.99 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=40.5
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++.-+.. .|.|.+....+.+ ..-||..-.+.+.+. .+|.|...|+..
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsEl 132 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEM 132 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchh
Confidence 35778888888887765544 4666665554333 233666666777766 799999999854
No 132
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=26.62 E-value=3.2e+02 Score=23.37 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=34.3
Q ss_pred ceEEEecCCEEEEEEEeCCCC---CceEEec----cccCC-CCCCCCCCcccCCCCCCCCeEEEEEEEC
Q 009149 59 PDIHSVTNDNLIINVFNSLDE---PFLLSWN----GIQNR-RNSFEDGVYGTTCPIPPGKNFTYILQVK 119 (542)
Q Consensus 59 P~i~v~~Gd~v~i~v~N~l~~---~~~iH~H----G~~~~-~~~~~DGv~~~q~~i~pG~~~~Y~f~~~ 119 (542)
..=.++.|..+.+.+.=.... ......| |+..+ ..+..||=-.+.|||..|+.++|.+.++
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 344667788777766532222 2233334 33322 1123455211279999999999999763
No 133
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.96 E-value=1.9e+02 Score=27.90 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=41.9
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++--... .|.|.+.+..++ +..-||.+-.+.+.++ .+|.|+..|+..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~~k----------------~da~PG~~~~~~~~~~-~~G~~~g~C~e~ 199 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--LHSWAVPALGVK----------------MDAVPGRLNQTAFIAS-RPGVFYGQCSEI 199 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--ccceeccccCCc----------------cccCCCceEEEEEEeC-CceEEEEEChhh
Confidence 46788889888888765443 455555544322 2345888888888887 799999998753
No 134
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.38 E-value=2.3e+02 Score=23.43 Aligned_cols=63 Identities=17% Similarity=0.232 Sum_probs=39.4
Q ss_pred eEEEecC-cEEEEEEEEcCCCceEEEEEecceeEE--------EeecCcccceeeeeeEEEcCCceEEEEEEe
Q 009149 203 AFNVEQG-KTYRLRISNVGLQNSLNFRIQNHKMKL--------VEVEGTHTLQTTYSSLDVHVGQSYSVLVTA 266 (542)
Q Consensus 203 ~~~v~~G-~~~rlRliNa~~~~~~~~~i~gh~~~v--------ia~DG~~~~p~~~~~l~l~pgeR~dv~v~~ 266 (542)
.+++.+| ++..+.+.|.+. +.+.+.-|-|-+++ -+.=|..+.=..-.++...|||.-+|.+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 83 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGD-RPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVA 83 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCC-cceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEE
Confidence 4677777 467899999998 55555555554433 222232233223467888899888887754
No 135
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.19 E-value=56 Score=32.12 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=16.1
Q ss_pred eeeEecchh---------------hhhhcceeeEEEEeCC
Q 009149 124 SFYYFPSLA---------------FHKAAGGFGGIRILSR 148 (542)
Q Consensus 124 t~wYH~H~~---------------~q~~~Gl~G~liV~~~ 148 (542)
.=|||+|.+ .|...--+=+++|+|.
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~ 173 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPT 173 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCc
Confidence 469999953 2333446667777764
No 136
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=24.04 E-value=2.1e+02 Score=23.19 Aligned_cols=49 Identities=16% Similarity=0.282 Sum_probs=23.0
Q ss_pred EEEEEEEEcCCCceEEEEEecceeEEEeecCcccc----eeeeeeEEEcCCceEEE
Q 009149 211 TYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTL----QTTYSSLDVHVGQSYSV 262 (542)
Q Consensus 211 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~----p~~~~~l~l~pgeR~dv 262 (542)
.|++||-|.+.. .+.|-...+.+...||.... .+.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 478899999886 23444444444444442210 01112235788886543
No 137
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.75 E-value=2.2e+02 Score=27.38 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=40.9
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++--... .|.|.+.....+ +..-||..-.+.+.++ .+|.|+..|+..
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~k----------------~daiPG~~~~~~~~~~-~~G~~~g~Cse~ 199 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--LHSWAVPSLGLK----------------TDAIPGRLNQTTLMST-RPGLYYGQCSEI 199 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--cccccccccccc----------------eecCCCceEEEEEecC-CcEEEEEECccc
Confidence 35778888888888765544 445555444322 2334788888888877 799999998753
No 138
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=23.72 E-value=1e+02 Score=27.31 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=23.0
Q ss_pred CCCCCCCCeEEEEEE-E--CCCceeeeEecch
Q 009149 103 TCPIPPGKNFTYILQ-V--KDQIGSFYYFPSL 131 (542)
Q Consensus 103 q~~i~pG~~~~Y~f~-~--~~~~Gt~wYH~H~ 131 (542)
..||+||++++-.+. + |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 588999999999984 2 3457999888763
No 139
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=22.92 E-value=3.2e+02 Score=23.34 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=32.1
Q ss_pred EEEecCCEEEEEEEeCCCC-----CceEEec--cccCCCC-CCCCCCc--ccCCCCCCCCeEEEEEEEC
Q 009149 61 IHSVTNDNLIINVFNSLDE-----PFLLSWN--GIQNRRN-SFEDGVY--GTTCPIPPGKNFTYILQVK 119 (542)
Q Consensus 61 i~v~~Gd~v~i~v~N~l~~-----~~~iH~H--G~~~~~~-~~~DGv~--~~q~~i~pG~~~~Y~f~~~ 119 (542)
=.++.|+.+.+.+.=...+ .+.+|+. |+..+.. ...|+=- ++.|||..|+.++|.+.++
T Consensus 24 C~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 24 CKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 3556677776666532221 1223332 4433321 1234311 2369999999999999763
No 140
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.83 E-value=2.4e+02 Score=27.25 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=42.1
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++-.+.. .|.|.+.+...++ ..-||..-.+.+.++ .+|.|...|+..
T Consensus 144 n~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~k~----------------daiPG~~~~~~~~~~-~~G~y~g~Cse~ 203 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--LHSFAVPSLSVKI----------------DAVPGRLNQTSFFIK-RPGVFYGQCSEI 203 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--hccccccccCcee----------------EccCCceEeEEEEeC-CCEEEEEEChhh
Confidence 45788899999998877644 4555555443322 334788888888887 799999988743
No 141
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.54 E-value=2e+02 Score=27.37 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=40.2
Q ss_pred ceEEEecCcEEEEEEEEcCCCceEEEEEecceeEEEeecCcccceeeeeeEEEcCCceEEEEEEeCCCCcceEEEEeee
Q 009149 202 AAFNVEQGKTYRLRISNVGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHVGQSYSVLVTADQPARDYYIVVSSR 280 (542)
Q Consensus 202 ~~~~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~p~~~~~l~l~pgeR~dv~v~~~~~~g~y~i~~~~~ 280 (542)
..+.+..|+.+||++-.+.. .|.|.+..- .-....-||..-.+-++++ .+|.|...|+..
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~vP~l----------------~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~ 189 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWIPQL----------------GGQKYAMTGMTMNWYLQAD-QVGTYRGRNANF 189 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhchhh----------------CceeecCCCceEEEEEEeC-CCEEEEEEehhh
Confidence 35677788877777765544 334444322 2223344888888999988 799999999854
No 142
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=22.35 E-value=3.4e+02 Score=23.26 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=37.2
Q ss_pred EEEEEEEEcCCCceEEEEEecc-eeEEEeecCcccce------eeeeeEEEcCCceEEEEEEeC
Q 009149 211 TYRLRISNVGLQNSLNFRIQNH-KMKLVEVEGTHTLQ------TTYSSLDVHVGQSYSVLVTAD 267 (542)
Q Consensus 211 ~~rlRliNa~~~~~~~~~i~gh-~~~via~DG~~~~p------~~~~~l~l~pgeR~dv~v~~~ 267 (542)
.++|.|-|.|...- .|.|. .+..+..||..+.. .....+.|.||++..+.|...
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~ 81 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWS 81 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEe
Confidence 56899999998543 45554 24455777774421 135579999999999888876
No 143
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=21.48 E-value=37 Score=30.94 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=25.4
Q ss_pred eEEEecCCEEEEEEEeCCCCCceEEecccc
Q 009149 60 DIHSVTNDNLIINVFNSLDEPFLLSWNGIQ 89 (542)
Q Consensus 60 ~i~v~~Gd~v~i~v~N~l~~~~~iH~HG~~ 89 (542)
++..+-++++.+.+.|++...+++||||+-
T Consensus 70 ~~~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 70 ELPGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred cccccCCCCcEEeccchhheeeecccceEE
Confidence 345667788999999999999999999983
Done!