Your job contains 1 sequence.
>009150
MAPKKTSHVSQSPIPIGNCEVTVEAKKFTCESDPNTLQISISRTAKIKIAVREDLKSSND
TTHSKSEEKGEEYIFVLVNPKDAEDSCSKSYLQDVLQIYSRELPTMNYAANTGKRSMFLE
KCVLNGKYCTLLLKSSFMDDDDVVVAAITYQIVPADTQYAEVPLAAVSSIYQHKGVGRLL
YLELRKRLQSVGIRTIFCWGDKESEGFWHKQDTSADTAVSLKFCFPVKPCEKSSLVTVNR
SLEAERLVMNGCSRDGAKSSGCSRSLEPVHGSGELAAFENVHCSNMTVGAAQIGTDTGAK
HCSCSQGTKRRWEASTSSLKSKKVKGSSCADCHLDSDRSLASAGGETVGLSGCKPLREIT
PSNHVTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIE
DLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYML
NDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK
YL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009150
(542 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2060535 - symbol:AT2G41450 species:3702 "Arabi... 590 7.9e-112 2
ZFIN|ZDB-GENE-041010-214 - symbol:paxip1 "PAX interacting... 226 4.5e-15 1
UNIPROTKB|A0JNA8 - symbol:PAXIP1 "PAX-interacting protein... 205 7.4e-13 1
UNIPROTKB|F1P482 - symbol:PAXIP1 "Uncharacterized protein... 205 8.2e-13 1
UNIPROTKB|Q6ZW49 - symbol:PAXIP1 "PAX-interacting protein... 205 8.3e-13 1
UNIPROTKB|G3MZP9 - symbol:PAXIP1 "PAX-interacting protein... 205 9.6e-13 1
RGD|1307547 - symbol:Paxip1 "PAX interacting (with transc... 196 7.2e-12 1
MGI|MGI:1890430 - symbol:Paxip1 "PAX interacting (with tr... 193 1.7e-11 1
RGD|1559468 - symbol:Mdc1 "mediator of DNA damage checkpo... 186 1.2e-10 1
UNIPROTKB|Q5U2M8 - symbol:Mdc1 "Mediator of DNA damage ch... 186 1.2e-10 1
MGI|MGI:3525201 - symbol:Mdc1 "mediator of DNA damage che... 186 1.7e-09 2
UNIPROTKB|F8W1C2 - symbol:MDC1 "Mediator of DNA damage ch... 183 2.1e-09 2
UNIPROTKB|Q7YR40 - symbol:MDC1 "Mediator of DNA damage ch... 185 2.4e-09 2
UNIPROTKB|E1BI26 - symbol:MDC1 "Uncharacterized protein" ... 181 2.5e-09 2
UNIPROTKB|Q14676 - symbol:MDC1 "Mediator of DNA damage ch... 183 3.6e-09 2
UNIPROTKB|Q5TM68 - symbol:MDC1 "Mediator of DNA damage ch... 182 5.1e-09 3
UNIPROTKB|F1RUB0 - symbol:MDC1 "Mediator of DNA damage ch... 183 5.5e-09 2
UNIPROTKB|Q767L8 - symbol:MDC1 "Mediator of DNA damage ch... 183 5.5e-09 2
ZFIN|ZDB-GENE-060810-185 - symbol:im:7163673 "im:7163673"... 182 1.2e-08 2
POMBASE|SPBC582.05c - symbol:brc1 "BRCT domain protein Br... 161 3.9e-08 1
WB|WBGene00004031 - symbol:pis-1 species:6239 "Caenorhabd... 155 2.3e-07 1
TAIR|locus:2125442 - symbol:AT4G03130 "AT4G03130" species... 156 6.9e-07 2
UNIPROTKB|F1NQT7 - symbol:F1NQT7 "Uncharacterized protein... 135 3.8e-05 2
UNIPROTKB|Q8NEM0 - symbol:MCPH1 "Microcephalin" species:9... 133 4.0e-05 1
TAIR|locus:2089960 - symbol:AT3G21480 "AT3G21480" species... 139 0.00012 2
DICTYBASE|DDB_G0274195 - symbol:DDB_G0274195 "Microcephal... 123 0.00041 2
MGI|MGI:2443308 - symbol:Mcph1 "microcephaly, primary aut... 123 0.00048 1
>TAIR|locus:2060535 [details] [associations]
symbol:AT2G41450 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008080 "N-acetyltransferase activity"
evidence=IEA;ISS] InterPro:IPR000182 Pfam:PF00583 PROSITE:PS51186
InterPro:IPR001357 Pfam:PF00533 EMBL:CP002685
GenomeReviews:CT485783_GR Gene3D:3.40.630.30 InterPro:IPR016181
SUPFAM:SSF55729 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0008080 EMBL:AC004625 eggNOG:NOG310206 IPI:IPI00533317
RefSeq:NP_181676.2 UniGene:At.42829 ProteinModelPortal:B3H6L5
SMR:B3H6L5 STRING:B3H6L5 EnsemblPlants:AT2G41450.1 GeneID:818743
KEGG:ath:AT2G41450 TAIR:At2g41450 HOGENOM:HOG000064676 OMA:FWLKQGF
PhylomeDB:B3H6L5 ProtClustDB:CLSN2708481 Genevestigator:B3H6L5
Uniprot:B3H6L5
Length = 612
Score = 590 (212.7 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 117/211 (55%), Positives = 155/211 (73%)
Query: 1 MAPKKTSHVSQSPIPIGNCEVTVEAKKFTCESDPNTLQISISRTAKIKIAVREDLKSSND 60
MAPK+ S + S IG+ EV V+ K FTCES P ++QI R ++KI+ ++ + S
Sbjct: 1 MAPKRASPMQSSLYSIGDYEVAVDGKNFTCESGPKSIQIKFPRNYRVKISEKDKIVSD-- 58
Query: 61 TTHSKSEEKGEEYIFVLVNPKDAEDSCSKSYLQDVLQIYSRELPTMNYAANTGKRSMFLE 120
+ K + +F+L+NP+D ED +KS+LQ+VL++YS+ELP M YA+NTGK+S FLE
Sbjct: 59 --YPKED------MFLLLNPRD-EDDFTKSHLQEVLKLYSKELPDMRYASNTGKQSAFLE 109
Query: 121 KCVLNGKYCTLLLKSSFMDDDDVVVAAITYQIVPADTQYAEVPLAAVSSIYQHKGVGRLL 180
+CV GKYC+L+LKS+ D D ++AAITYQIVPADTQYAE+PLAAV+ +Q KG G+L+
Sbjct: 110 RCVSKGKYCSLVLKSTLGGDSDEILAAITYQIVPADTQYAEIPLAAVTYTHQKKGFGKLV 169
Query: 181 YLELRKRLQSVGIRTIFCWGDKESEGFWHKQ 211
Y EL KRL SVGIRTI+CW DKESEGFW KQ
Sbjct: 170 YEELMKRLHSVGIRTIYCWADKESEGFWLKQ 200
Score = 534 (193.0 bits), Expect = 7.9e-112, Sum P(2) = 7.9e-112
Identities = 120/255 (47%), Positives = 160/255 (62%)
Query: 285 NMTVGAAQIGTDTGAKHCSCSQGTKRRWEAXXXXXXXXXXXXXXCADCHLDSDRSLASAG 344
N V + Q T CS + G KR WEA + + + LA +
Sbjct: 308 NNNVISDQATTADSETKCS-TPGLKRSWEASLSSLQSKRIRANNNNNSEI-AKTDLAQSS 365
Query: 345 GETVGLSGCKPLREITPSNHVTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLM 404
+ G +IT + T+ C ND ++ R A I E + NG+ +RI+LM
Sbjct: 366 AKQ-SKDGNSSQVDITKDSLPTI-CKRNDVEQCR-----MATGIDMEARPNGQHYRILLM 418
Query: 405 NIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLK 464
+I D++K+ LT+VI LGG VT DG+TSTH+VTGKVRKTLN TALCSGAWIVSP+WLK
Sbjct: 419 DICDENKRAWLTEVIRKLGGTVTLDGTTSTHIVTGKVRKTLNLCTALCSGAWIVSPSWLK 478
Query: 465 ESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIK 524
ES REGRF +E+S++L+D+DY LKY ++LK +VLRAKARP LL+GY+I + +I+ PIK
Sbjct: 479 ESVREGRFANEASHILHDEDYQLKYDTDLKSTVLRAKARPNSLLKGYDICVGPNIELPIK 538
Query: 525 TLSAIVRSAGGNVSS 539
T SAI++SAGGNV S
Sbjct: 539 TSSAIIKSAGGNVIS 553
Score = 42 (19.8 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 418 VIEDLGGAVTSDGS----TSTHVVTGKVRKTLNFLTALCSGAWIVSPNW 462
+I+ GG V S + S + G T+ L A G W S W
Sbjct: 543 IIKSAGGNVISGVNKVKEASKAIYIGCEEDTVGALFAAKKGIWTFSSEW 591
Score = 38 (18.4 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 238 VNRSLEAERLVMNGCSRD 255
VN+ EA + + GC D
Sbjct: 555 VNKVKEASKAIYIGCEED 572
>ZFIN|ZDB-GENE-041010-214 [details] [associations]
symbol:paxip1 "PAX interacting (with
transcription-activation domain) protein 1" species:7955 "Danio
rerio" [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-041010-214 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GeneTree:ENSGT00600000084454 EMBL:CR855328
IPI:IPI00489284 Ensembl:ENSDART00000144672 ArrayExpress:F1Q5Z1
Bgee:F1Q5Z1 Uniprot:F1Q5Z1
Length = 1122
Score = 226 (84.6 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 51/124 (41%), Positives = 71/124 (57%)
Query: 417 KVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDES 476
K + DLGG V TH+V KV +T+ FLTA+ IV+P WL+ES++ +FVDE
Sbjct: 937 KKLYDLGGEVADSTQKCTHLVANKVTRTVKFLTAISVVKHIVTPEWLEESWKSQKFVDEQ 996
Query: 477 SYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGN 536
SYML D + + + L++S+ RA A P L +G + I P + T+ IV SA G
Sbjct: 997 SYMLRDAEAEVLFSFSLEESLKRAHAAP--LFKGKYFYITPGICPSLSTMKLIVESAAGK 1054
Query: 537 VSSK 540
V SK
Sbjct: 1055 VLSK 1058
>UNIPROTKB|A0JNA8 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9913 "Bos
taurus" [GO:0016363 "nuclear matrix" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0006355
GO:GO:0006281 GO:GO:0006351 GO:GO:0006310 GO:GO:0016363
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 eggNOG:NOG310206
KO:K14972 EMBL:BC126589 IPI:IPI00711253 RefSeq:NP_001071385.1
UniGene:Bt.21228 ProteinModelPortal:A0JNA8 STRING:A0JNA8
PRIDE:A0JNA8 GeneID:513213 KEGG:bta:513213 CTD:22976
HOGENOM:HOG000115463 HOVERGEN:HBG061191 InParanoid:A0JNA8
OrthoDB:EOG4CRKZF NextBio:20870752 ArrayExpress:A0JNA8
Uniprot:A0JNA8
Length = 984
Score = 205 (77.2 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E F+ +FVDE +Y+L
Sbjct: 804 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQKFVDEQNYLLR 863
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA A P L + + I P + T+ AIV AGG V S+
Sbjct: 864 DAEAEVLFSFSLEESLRRAHASP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSR 920
>UNIPROTKB|F1P482 [details] [associations]
symbol:PAXIP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000416 "positive regulation of histone H3-K36
methylation" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0010212 "response to ionizing radiation"
evidence=IEA] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=IEA] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=IEA] [GO:0035066
"positive regulation of histone acetylation" evidence=IEA]
[GO:0035097 "histone methyltransferase complex" evidence=IEA]
[GO:0043542 "endothelial cell migration" evidence=IEA] [GO:0045830
"positive regulation of isotype switching" evidence=IEA]
[GO:0051568 "histone H3-K4 methylation" evidence=IEA] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IEA]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=IEA] [GO:0060612 "adipose
tissue development" evidence=IEA] [GO:0060717 "chorion development"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0010212
GO:GO:0035066 GO:GO:0031398 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330 GO:GO:0051571
GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 OMA:DIQQINR GO:GO:0000416
GO:GO:0045830 GeneTree:ENSGT00600000084454 EMBL:AADN02000335
EMBL:AADN02000336 EMBL:AADN02000337 IPI:IPI00594414
Ensembl:ENSGALT00000010241 Uniprot:F1P482
Length = 1062
Score = 205 (77.2 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E F+ +FVDE +++L
Sbjct: 898 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQKFVDEQNFVLR 957
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA+ P L +G + I P + T+ AIV AGG V SK
Sbjct: 958 DAEAEVLFCFSLEESLKRAQVAP--LFKGKYFYITPGICPSLSTMKAIVECAGGKVLSK 1014
>UNIPROTKB|Q6ZW49 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9606
"Homo sapiens" [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001570 "vasculogenesis"
evidence=IEA] [GO:0043542 "endothelial cell migration"
evidence=IEA] [GO:0060612 "adipose tissue development"
evidence=IEA] [GO:0060717 "chorion development" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010212 "response to
ionizing radiation" evidence=IDA] [GO:0030330 "DNA damage response,
signal transduction by p53 class mediator" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000416 "positive
regulation of histone H3-K36 methylation" evidence=ISS] [GO:0031398
"positive regulation of protein ubiquitination" evidence=ISS]
[GO:0035066 "positive regulation of histone acetylation"
evidence=ISS] [GO:0045830 "positive regulation of isotype
switching" evidence=ISS] [GO:0051571 "positive regulation of
histone H3-K4 methylation" evidence=ISS] [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=ISS;IMP] [GO:0035097 "histone methyltransferase
complex" evidence=IDA] [GO:0051568 "histone H3-K4 methylation"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001357 Pfam:PF00533 GO:GO:0006281 GO:GO:0060612
GO:GO:0006351 GO:GO:0010212 GO:GO:0006310 GO:GO:0035066
GO:GO:0001570 GO:GO:0031398 GO:GO:0016363 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330
eggNOG:NOG310206 GO:GO:0051571 GO:GO:0043542 GO:GO:0035097
GO:GO:0060261 PDB:3SQD PDBsum:3SQD KO:K14972 CTD:22976
HOVERGEN:HBG061191 EMBL:AK123044 EMBL:AK123600 EMBL:AK307417
EMBL:BX538201 EMBL:BX640616 EMBL:AC093726 EMBL:U80735 EMBL:BC008328
EMBL:BC033781 IPI:IPI00182798 IPI:IPI00479772 IPI:IPI00854696
IPI:IPI00894296 IPI:IPI00973545 RefSeq:NP_031375.3
UniGene:Hs.443881 ProteinModelPortal:Q6ZW49 SMR:Q6ZW49
DIP:DIP-41786N IntAct:Q6ZW49 MINT:MINT-276076 STRING:Q6ZW49
PhosphoSite:Q6ZW49 DMDM:74723057 PRIDE:Q6ZW49
Ensembl:ENST00000397192 Ensembl:ENST00000404141 GeneID:22976
KEGG:hsa:22976 UCSC:uc003wlr.1 UCSC:uc022aqf.1 UCSC:uc022aqh.1
GeneCards:GC07M154735 H-InvDB:HIX0007243 HGNC:HGNC:8624
HPA:HPA006694 MIM:608254 neXtProt:NX_Q6ZW49 PharmGKB:PA32964
OMA:DIQQINR ChiTaRS:PAXIP1 GenomeRNAi:22976 NextBio:43785
ArrayExpress:Q6ZW49 Bgee:Q6ZW49 CleanEx:HS_PAXIP1
Genevestigator:Q6ZW49 GO:GO:0060717 GO:GO:0000416 GO:GO:0045830
Uniprot:Q6ZW49
Length = 1069
Score = 205 (77.2 bits), Expect = 8.3e-13, P = 8.3e-13
Identities = 45/119 (37%), Positives = 66/119 (55%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E FR +F+DE +Y+L
Sbjct: 889 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 948
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V SK
Sbjct: 949 DAEAEVLFSFSLEESLKRAHVSP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSK 1005
>UNIPROTKB|G3MZP9 [details] [associations]
symbol:PAXIP1 "PAX-interacting protein 1" species:9913 "Bos
taurus" [GO:0060717 "chorion development" evidence=IEA] [GO:0060612
"adipose tissue development" evidence=IEA] [GO:0060261 "positive
regulation of transcription initiation from RNA polymerase II
promoter" evidence=IEA] [GO:0051571 "positive regulation of histone
H3-K4 methylation" evidence=IEA] [GO:0051568 "histone H3-K4
methylation" evidence=IEA] [GO:0045830 "positive regulation of
isotype switching" evidence=IEA] [GO:0043542 "endothelial cell
migration" evidence=IEA] [GO:0035097 "histone methyltransferase
complex" evidence=IEA] [GO:0035066 "positive regulation of histone
acetylation" evidence=IEA] [GO:0031398 "positive regulation of
protein ubiquitination" evidence=IEA] [GO:0030330 "DNA damage
response, signal transduction by p53 class mediator" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0000416 "positive
regulation of histone H3-K36 methylation" evidence=IEA]
InterPro:IPR001357 Pfam:PF00533 GO:GO:0060612 GO:GO:0010212
GO:GO:0035066 GO:GO:0001570 GO:GO:0031398 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330
GO:GO:0051571 GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 OMA:DIQQINR
GO:GO:0060717 GO:GO:0000416 GO:GO:0045830
GeneTree:ENSGT00600000084454 EMBL:DAAA02012116
Ensembl:ENSBTAT00000064484 Uniprot:G3MZP9
Length = 1195
Score = 205 (77.2 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E F+ +FVDE +Y+L
Sbjct: 1015 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQKFVDEQNYLLR 1074
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA A P L + + I P + T+ AIV AGG V S+
Sbjct: 1075 DAEAEVLFSFSLEESLRRAHASP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSR 1131
>RGD|1307547 [details] [associations]
symbol:Paxip1 "PAX interacting (with transcription-activation
domain) protein 1" species:10116 "Rattus norvegicus" [GO:0000416
"positive regulation of histone H3-K36 methylation" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006974 "response to DNA damage stimulus"
evidence=ISO] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=ISO] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=ISO] [GO:0035066
"positive regulation of histone acetylation" evidence=ISO]
[GO:0035097 "histone methyltransferase complex" evidence=ISO]
[GO:0043542 "endothelial cell migration" evidence=ISO] [GO:0045830
"positive regulation of isotype switching" evidence=ISO]
[GO:0051568 "histone H3-K4 methylation" evidence=ISO] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=ISO]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=ISO] [GO:0060612 "adipose
tissue development" evidence=ISO] [GO:0060717 "chorion development"
evidence=ISO] InterPro:IPR001357 Pfam:PF00533 RGD:1307547
GO:GO:0060612 GO:GO:0010212 GO:GO:0035066 GO:GO:0001570
GO:GO:0031398 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GO:GO:0051568 GO:GO:0030330 GO:GO:0051571 GO:GO:0043542
GO:GO:0035097 GO:GO:0060261 GO:GO:0060717 GO:GO:0000416
GO:GO:0045830 IPI:IPI00949383 Ensembl:ENSRNOT00000066753
ArrayExpress:F1LVY0 Uniprot:F1LVY0
Length = 994
Score = 196 (74.1 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 43/119 (36%), Positives = 66/119 (55%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P+WL+E F+ F+DE +Y+L
Sbjct: 814 LGGEVAESTKKCTHLIASKVTRTVKFLTAISVVKHIVTPDWLEECFKRQMFIDEQNYILR 873
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V +K
Sbjct: 874 DAEAEVLFSFSLEESLKRAHVSP--LFKTKYFYITPGICPSLATMKAIVECAGGKVLAK 930
>MGI|MGI:1890430 [details] [associations]
symbol:Paxip1 "PAX interacting (with
transcription-activation domain) protein 1" species:10090 "Mus
musculus" [GO:0000416 "positive regulation of histone H3-K36
methylation" evidence=IMP] [GO:0001570 "vasculogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0030330 "DNA damage response, signal transduction
by p53 class mediator" evidence=ISO] [GO:0031398 "positive
regulation of protein ubiquitination" evidence=IMP] [GO:0035066
"positive regulation of histone acetylation" evidence=IMP]
[GO:0035097 "histone methyltransferase complex" evidence=ISO;IDA]
[GO:0043542 "endothelial cell migration" evidence=IMP] [GO:0045830
"positive regulation of isotype switching" evidence=IMP]
[GO:0051568 "histone H3-K4 methylation" evidence=ISO] [GO:0051571
"positive regulation of histone H3-K4 methylation" evidence=IMP]
[GO:0060261 "positive regulation of transcription initiation from
RNA polymerase II promoter" evidence=ISO;IMP] [GO:0060612 "adipose
tissue development" evidence=IMP] [GO:0060717 "chorion development"
evidence=IMP] InterPro:IPR001357 MGI:MGI:1890430 Pfam:PF00533
GO:GO:0006281 GO:GO:0060612 GO:GO:0006351 GO:GO:0006974
GO:GO:0010212 GO:GO:0006310 GO:GO:0035066 GO:GO:0001570
GO:GO:0031398 GO:GO:0016363 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 GO:GO:0051568 GO:GO:0030330 eggNOG:NOG310206
GO:GO:0051571 GO:GO:0043542 GO:GO:0035097 GO:GO:0060261 KO:K14972
CTD:22976 HOGENOM:HOG000115463 HOVERGEN:HBG061191 OrthoDB:EOG4CRKZF
OMA:DIQQINR ChiTaRS:PAXIP1 GO:GO:0060717 GO:GO:0000416
GO:GO:0045830 EMBL:AF104261 EMBL:AK144606 EMBL:BC066014
IPI:IPI00421197 RefSeq:NP_061366.2 UniGene:Mm.277190
UniGene:Mm.409895 HSSP:Q14676 ProteinModelPortal:Q6NZQ4 SMR:Q6NZQ4
IntAct:Q6NZQ4 STRING:Q6NZQ4 PhosphoSite:Q6NZQ4 PaxDb:Q6NZQ4
PRIDE:Q6NZQ4 Ensembl:ENSMUST00000002291 GeneID:55982 KEGG:mmu:55982
UCSC:uc008wtr.1 GeneTree:ENSGT00600000084454 InParanoid:Q6NZQ4
NextBio:311686 Bgee:Q6NZQ4 Genevestigator:Q6NZQ4 Uniprot:Q6NZQ4
Length = 1056
Score = 193 (73.0 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 43/119 (36%), Positives = 66/119 (55%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P+WL+E F+ F+DE +Y+L
Sbjct: 876 LGGEVAECTKKCTHLIASKVTRTVKFLTAISVVKHIVTPDWLEECFKRQTFIDEQNYILR 935
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V +K
Sbjct: 936 DAEAEVLFSFSLEESLKRAHVSP--LFKTKYFYITPGICPSLATMKAIVECAGGKVLAK 992
>RGD|1559468 [details] [associations]
symbol:Mdc1 "mediator of DNA damage checkpoint 1" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005694 "chromosome" evidence=IEA;ISO;ISS] [GO:0005925 "focal
adhesion" evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0008022 "protein
C-terminus binding" evidence=IEA;ISO] [GO:0070975 "FHA domain
binding" evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 InterPro:IPR001357 RGD:1559468 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0005925 Gene3D:2.60.200.20
SUPFAM:SSF49879 EMBL:BX883048 GO:GO:0007049 eggNOG:NOG12793
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 CTD:9656
HOVERGEN:HBG080567 OrthoDB:EOG43BMN6 HOGENOM:HOG000113506
EMBL:BC085955 IPI:IPI00953795 RefSeq:NP_001159747.1
UniGene:Rn.106312 ProteinModelPortal:Q5U2M8 SMR:Q5U2M8
STRING:Q5U2M8 PRIDE:Q5U2M8 GeneID:309595 KEGG:rno:309595
UCSC:RGD:1559468 InParanoid:Q5U2M8 NextBio:661028
ArrayExpress:Q5U2M8 Genevestigator:Q5U2M8
GermOnline:ENSRNOG00000032813 Uniprot:Q5U2M8
Length = 1279
Score = 186 (70.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/116 (34%), Positives = 66/116 (56%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL A+ G I+S NWL +S + G F+ Y++
Sbjct: 1105 LGGSLASSVNEASHLVTDRIRRTVKFLCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVT 1164
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
D + + L+DS+ RA+ R LL Y I + +QPP + I+ GG V
Sbjct: 1165 DPEQEKNFSFSLRDSLSRARERR--LLEDYEIHVTPGVQPPPPQMGEIISCCGGTV 1218
>UNIPROTKB|Q5U2M8 [details] [associations]
symbol:Mdc1 "Mediator of DNA damage checkpoint protein 1"
species:10116 "Rattus norvegicus" [GO:0005925 "focal adhesion"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0070975 "FHA domain binding" evidence=IEA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 InterPro:IPR001357 RGD:1559468 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0005925 Gene3D:2.60.200.20
SUPFAM:SSF49879 EMBL:BX883048 GO:GO:0007049 eggNOG:NOG12793
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 CTD:9656
HOVERGEN:HBG080567 OrthoDB:EOG43BMN6 HOGENOM:HOG000113506
EMBL:BC085955 IPI:IPI00953795 RefSeq:NP_001159747.1
UniGene:Rn.106312 ProteinModelPortal:Q5U2M8 SMR:Q5U2M8
STRING:Q5U2M8 PRIDE:Q5U2M8 GeneID:309595 KEGG:rno:309595
UCSC:RGD:1559468 InParanoid:Q5U2M8 NextBio:661028
ArrayExpress:Q5U2M8 Genevestigator:Q5U2M8
GermOnline:ENSRNOG00000032813 Uniprot:Q5U2M8
Length = 1279
Score = 186 (70.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/116 (34%), Positives = 66/116 (56%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL A+ G I+S NWL +S + G F+ Y++
Sbjct: 1105 LGGSLASSVNEASHLVTDRIRRTVKFLCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVT 1164
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
D + + L+DS+ RA+ R LL Y I + +QPP + I+ GG V
Sbjct: 1165 DPEQEKNFSFSLRDSLSRARERR--LLEDYEIHVTPGVQPPPPQMGEIISCCGGTV 1218
>MGI|MGI:3525201 [details] [associations]
symbol:Mdc1 "mediator of DNA damage checkpoint 1"
species:10090 "Mus musculus" [GO:0005634 "nucleus" evidence=ISO]
[GO:0005694 "chromosome" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0070975 "FHA domain
binding" evidence=ISO] InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
MGI:MGI:3525201 GO:GO:0005634 GO:GO:0005694 GO:GO:0006281
GO:GO:0005925 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0007049
eggNOG:NOG12793 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
PDB:3VA4 PDBsum:3VA4 CTD:9656 HOVERGEN:HBG080567 OrthoDB:EOG43BMN6
ChiTaRS:MDC1 HOGENOM:HOG000113506 EMBL:AY826432 EMBL:BC085140
EMBL:BC094363 EMBL:AK129074 IPI:IPI01007763 RefSeq:NP_001010833.2
UniGene:Mm.218511 PDB:3VA1 PDBsum:3VA1 ProteinModelPortal:Q5PSV9
SMR:Q5PSV9 STRING:Q5PSV9 PhosphoSite:Q5PSV9 PaxDb:Q5PSV9
PRIDE:Q5PSV9 GeneID:240087 KEGG:mmu:240087 UCSC:uc008cir.1
InParanoid:Q5PSV9 NextBio:384441 Bgee:Q5PSV9 CleanEx:MM_MDC1
Genevestigator:Q5PSV9 GermOnline:ENSMUSG00000061607 Uniprot:Q5PSV9
Length = 1707
Score = 186 (70.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 40/114 (35%), Positives = 65/114 (57%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL AL G I+S NWL +S + G F+ Y++
Sbjct: 1530 LGGSLASSVNEASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVT 1589
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
D + + L+DS+ RA+ R LL Y I + +QPP + I+ GG
Sbjct: 1590 DPEQEKNFSFSLRDSLCRARERR--LLEDYEIHVTPGVQPPPPQMGEIISCCGG 1641
Score = 41 (19.5 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 200 GDKESEGFWHKQDTSAD--TAVSLKFCFPVKPCEKSSL-VTVNRSLEAE 245
GD E+ G H QD A T V K V P E++ + +N + E
Sbjct: 343 GDPEAPGVAHLQDCLAGSGTDVEDKTALDV-PLERNHTPMVINSDTDEE 390
Score = 39 (18.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 412 KVHLTKVIEDLGGAVTSDGS 431
K+ TKV ++ G A SDGS
Sbjct: 267 KLKDTKVKKEAGRAGVSDGS 286
>UNIPROTKB|F8W1C2 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005925 "focal adhesion"
evidence=IDA] InterPro:IPR001357 GO:GO:0005634 GO:GO:0005925
SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AL662848 EMBL:BX927283
EMBL:CR936878 EMBL:CR788240 EMBL:CR759873 HGNC:HGNC:21163
ChiTaRS:MDC1 IPI:IPI00937211 SMR:F8W1C2 Ensembl:ENST00000548805
Ensembl:ENST00000549771 Ensembl:ENST00000550110
Ensembl:ENST00000550210 Ensembl:ENST00000551267 Uniprot:F8W1C2
Length = 1655
Score = 183 (69.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 43/163 (26%), Positives = 80/163 (49%)
Query: 373 DAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGST 432
D E+ P S + + +++ + D + + + LGG++ +
Sbjct: 1433 DQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGE----RAVLALGGSLAGSAAE 1488
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSE 492
++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++ D + +
Sbjct: 1489 ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFS 1548
Query: 493 LKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
L+D++ RA+ R LL GY I + +QPP + I+ GG
Sbjct: 1549 LQDALSRARERR--LLEGYEIYVTPGVQPPPPQMGEIISCCGG 1589
Score = 43 (20.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 7 SHVSQSPIPIGNCEVTVEAKKFTCESDPNT-LQIS-ISRTAKIKIAVREDLKSSNDTTHS 64
+H + P G+ + +VEA K S P L+ S S T I V +++ + H
Sbjct: 355 AHSEKDQPPFGDSDDSVEADK----SSPGIHLERSQASTTVDINTQVEKEVPPGSAIIHI 410
Query: 65 KSEEKGEE 72
K + E
Sbjct: 411 KKHQVSVE 418
Score = 40 (19.1 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 52 REDLKSSNDTTHSKSEEKGEEYIFVLVNPKDAEDSCSK 89
+ L + + H K ++GE ++ ++ ED+ K
Sbjct: 1378 KRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEK 1415
>UNIPROTKB|Q7YR40 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9598 "Pan troglodytes" [GO:0005694 "chromosome"
evidence=ISS] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879
EMBL:BA000041 GO:GO:0007049 eggNOG:NOG12793 SUPFAM:SSF52113
PROSITE:PS50172 CTD:9656 HOVERGEN:HBG080567 EMBL:AB210171
EMBL:AB210172 RefSeq:NP_001035841.1 UniGene:Ptr.6148
ProteinModelPortal:Q7YR40 SMR:Q7YR40 STRING:Q7YR40 PRIDE:Q7YR40
GeneID:471959 KEGG:ptr:471959 NextBio:20848814 Uniprot:Q7YR40
Length = 2171
Score = 185 (70.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 43/163 (26%), Positives = 80/163 (49%)
Query: 373 DAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGST 432
D E+ P S + + +++ + D + + + LGG++ +
Sbjct: 1949 DQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGE----RAVLALGGSLAGSAAE 2004
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSE 492
++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++ D + +
Sbjct: 2005 ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSHKAGFFLPPDEYVVTDPEQEKNFGFS 2064
Query: 493 LKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
L+D++ RA+ R LL GY I + +QPP + I+ GG
Sbjct: 2065 LQDALSRARERR--LLEGYEIYVTPGVQPPPPQMGEIISCCGG 2105
Score = 43 (20.2 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 7 SHVSQSPIPIGNCEVTVEAKKFTCESDPNT-LQIS-ISRTAKIKIAVREDLKSSNDTTHS 64
+H + P G+ + +VEA K S P L+ S S T I V +++ + H
Sbjct: 483 AHSEKDQPPFGDSDDSVEADK----SSPGIHLERSQASTTVDINTQVEKEVPPGSAIIHI 538
Query: 65 KSEEKGEE 72
K + E
Sbjct: 539 KKHQVSVE 546
Score = 40 (19.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 52 REDLKSSNDTTHSKSEEKGEEYIFVLVNPKDAEDSCSK 89
+ L + + H K ++GE ++ ++ ED+ K
Sbjct: 1894 KRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEK 1931
>UNIPROTKB|E1BI26 [details] [associations]
symbol:MDC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070975 "FHA domain binding" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005925 "focal
adhesion" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001357
GO:GO:0005634 GO:GO:0005925 SUPFAM:SSF52113 PROSITE:PS50172
OMA:SVKTPET GeneTree:ENSGT00600000084454 EMBL:DAAA02055400
IPI:IPI00710736 Ensembl:ENSBTAT00000035900 Uniprot:E1BI26
Length = 1768
Score = 181 (68.8 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 39/116 (33%), Positives = 66/116 (56%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL AL G I+S WL ES + G F+ Y++
Sbjct: 1591 LGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIPILSLAWLHESRKAGCFLPPDEYLVT 1650
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
D + + L++++ RA+ R LL GY I + +QPP + I+ GG +
Sbjct: 1651 DPEQEKNFGFSLREALSRARERR--LLEGYEIHVTPGVQPPPPQMGEIINCCGGAI 1704
Score = 45 (20.9 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 335 DSDRSLASAGGETVGLSGCKPLREITPSNHVTVDCTGND 373
DSD ++ G L+G +P R + N + D G D
Sbjct: 132 DSDTDVSDESGPPRRLAGVRPKRAWS-CNFIDSDTDGED 169
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 331 DCHLDSDRSLASAGG 345
DC LD++ + ++A G
Sbjct: 399 DCELDAENTSSAAAG 413
Score = 39 (18.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/86 (23%), Positives = 33/86 (38%)
Query: 1 MAPKKTSHVSQSPIPIGNCEVTVEAKKFTCESDPNTLQ---ISISRTAKIKI--AVREDL 55
+ PK TS S+ P + + E P+ L I+ T++ A R +
Sbjct: 1150 VTPKPTSRASRGRTPRSSTKTPEPVVSTASELQPSALTDQPITPELTSRATRGRAQRSSV 1209
Query: 56 KSSNDTTHSKSEEKGEEYIFVLVNPK 81
K+ + T + E + LV PK
Sbjct: 1210 KTPDPVTTTTPELQPSTSTDQLVTPK 1235
>UNIPROTKB|Q14676 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9606 "Homo sapiens" [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070975 "FHA domain binding" evidence=IPI] [GO:0005694
"chromosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005925 "focal adhesion" evidence=IDA]
Reactome:REACT_216 InterPro:IPR000253 InterPro:IPR008984
Pfam:PF00498 PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357
GO:GO:0005694 GO:GO:0005654 EMBL:BA000025 EMBL:CH471081
GO:GO:0005925 Gene3D:2.60.200.20 SUPFAM:SSF49879 GO:GO:0007049
GO:GO:0000724 eggNOG:NOG12793 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 EMBL:AL845353 GO:GO:0031573 EMBL:AL662797
EMBL:D79992 EMBL:CR749828 EMBL:AB088099 EMBL:AB202097 EMBL:AB103605
EMBL:AL662848 EMBL:BX248307 EMBL:BX927283 EMBL:CR936878
EMBL:CR788240 EMBL:CR759873 EMBL:BC110645 EMBL:BC152556
IPI:IPI00470805 IPI:IPI00552897 IPI:IPI00895842 IPI:IPI00895860
RefSeq:NP_055456.2 UniGene:Hs.653495 PDB:2ADO PDB:2AZM PDB:2ETX
PDB:3K05 PDB:3UMZ PDB:3UN0 PDB:3UNM PDB:3UNN PDB:3UOT PDBsum:2ADO
PDBsum:2AZM PDBsum:2ETX PDBsum:3K05 PDBsum:3UMZ PDBsum:3UN0
PDBsum:3UNM PDBsum:3UNN PDBsum:3UOT ProteinModelPortal:Q14676
SMR:Q14676 DIP:DIP-33603N IntAct:Q14676 MINT:MINT-259925
STRING:Q14676 PhosphoSite:Q14676 DMDM:68565390 PaxDb:Q14676
PRIDE:Q14676 Ensembl:ENST00000376405 Ensembl:ENST00000376406
Ensembl:ENST00000383566 Ensembl:ENST00000420019
Ensembl:ENST00000420320 Ensembl:ENST00000427406
Ensembl:ENST00000435664 Ensembl:ENST00000440369
Ensembl:ENST00000449153 Ensembl:ENST00000546487
Ensembl:ENST00000547047 Ensembl:ENST00000547874
Ensembl:ENST00000548112 Ensembl:ENST00000548542
Ensembl:ENST00000550004 Ensembl:ENST00000551204
Ensembl:ENST00000551460 Ensembl:ENST00000552263
Ensembl:ENST00000553048 GeneID:9656 KEGG:hsa:9656 UCSC:uc003nrf.4
UCSC:uc003nrg.4 UCSC:uc011dmp.1 CTD:9656 GeneCards:GC06M030667
HGNC:HGNC:21163 HPA:HPA006915 MIM:607593 neXtProt:NX_Q14676
PharmGKB:PA134942837 HOVERGEN:HBG080567 InParanoid:Q14676
OMA:SVKTPET OrthoDB:EOG43BMN6 ChiTaRS:MDC1 EvolutionaryTrace:Q14676
GenomeRNAi:9656 NextBio:36251 ArrayExpress:Q14676 Bgee:Q14676
Genevestigator:Q14676 GermOnline:ENSG00000137337 Uniprot:Q14676
Length = 2089
Score = 183 (69.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 43/163 (26%), Positives = 80/163 (49%)
Query: 373 DAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGST 432
D E+ P S + + +++ + D + + + LGG++ +
Sbjct: 1867 DQAEEEPNRIPSRSLRRTKLNQESTAPKVLFTGVVDARGE----RAVLALGGSLAGSAAE 1922
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSE 492
++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++ D + +
Sbjct: 1923 ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFS 1982
Query: 493 LKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
L+D++ RA+ R LL GY I + +QPP + I+ GG
Sbjct: 1983 LQDALSRARERR--LLEGYEIYVTPGVQPPPPQMGEIISCCGG 2023
Score = 43 (20.2 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 7 SHVSQSPIPIGNCEVTVEAKKFTCESDPNT-LQIS-ISRTAKIKIAVREDLKSSNDTTHS 64
+H + P G+ + +VEA K S P L+ S S T I V +++ + H
Sbjct: 483 AHSEKDQPPFGDSDDSVEADK----SSPGIHLERSQASTTVDINTQVEKEVPPGSAIIHI 538
Query: 65 KSEEKGEE 72
K + E
Sbjct: 539 KKHQVSVE 546
Score = 40 (19.1 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 52 REDLKSSNDTTHSKSEEKGEEYIFVLVNPKDAEDSCSK 89
+ L + + H K ++GE ++ ++ ED+ K
Sbjct: 1812 KRSLATMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEK 1849
>UNIPROTKB|Q5TM68 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9544 "Macaca mulatta" [GO:0005694 "chromosome"
evidence=ISS] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357 GO:GO:0005634
GO:GO:0005694 GO:GO:0006281 GO:GO:0005925 Gene3D:2.60.200.20
SUPFAM:SSF49879 GO:GO:0007049 eggNOG:NOG12793 EMBL:AB128049
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 CTD:9656
HOVERGEN:HBG080567 OrthoDB:EOG43BMN6 RefSeq:NP_001108419.1
UniGene:Mmu.17472 ProteinModelPortal:Q5TM68 SMR:Q5TM68
STRING:Q5TM68 PRIDE:Q5TM68 GeneID:712318 KEGG:mcc:712318
HOGENOM:HOG000113506 InParanoid:Q5TM68 NextBio:19984480
Uniprot:Q5TM68
Length = 2173
Score = 182 (69.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 38/114 (33%), Positives = 65/114 (57%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ + ++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++
Sbjct: 1996 LGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVT 2055
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
D + + L+D++ RA+ R LL GY I + +QPP + I+ GG
Sbjct: 2056 DPEQEKNFGFSLQDALSRARERR--LLEGYEIYVTPGVQPPPPQMGEIISCCGG 2107
Score = 49 (22.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 7 SHVSQSPIPIGNCEVTVEAKKFTCESDPNTLQISISRTAKIKIAVREDLKSSNDTTHSKS 66
+H + P G+ + +VEA K + Q SI T I V E++ + H K
Sbjct: 485 AHSEKDQPPFGDSDDSVEADKSSPGIHLERSQASI--TVDINTQVEEEVPPGSAIVHMKK 542
Query: 67 EEKGEE 72
+ E
Sbjct: 543 HQVSME 548
Score = 40 (19.1 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 356 LREITPSNHVTVDCTGNDAKEDRP 379
L ++PS T+ TG D ++ P
Sbjct: 1069 LSPLSPSIEPTIRKTGQDRSQEAP 1092
Score = 37 (18.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 52 REDLKSSNDTTHSKSEEKGEEYIFVLVNPKDAEDSCSK 89
+ L + H K ++GE ++ ++ ED+ K
Sbjct: 1896 KRSLAIMDSPPHQKQPQRGEVSQKTVIIKEEEEDTAEK 1933
>UNIPROTKB|F1RUB0 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9823 "Sus scrofa" [GO:0070975 "FHA domain binding"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0005925 "focal adhesion" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498
PROSITE:PS50006 SMART:SM00240 InterPro:IPR001357 GO:GO:0005634
GO:GO:0005925 Gene3D:2.60.200.20 SUPFAM:SSF49879 SUPFAM:SSF52113
PROSITE:PS50172 OMA:SVKTPET GeneTree:ENSGT00600000084454
EMBL:CU480634 Ensembl:ENSSSCT00000001480 ArrayExpress:F1RUB0
Uniprot:F1RUB0
Length = 2042
Score = 183 (69.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 39/116 (33%), Positives = 67/116 (57%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++
Sbjct: 1865 LGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVT 1924
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
D + + L++++ RA+ R LL GY I + +QPP + I+ GG V
Sbjct: 1925 DPEQEKNFGFSLREALSRARERK--LLEGYEIHVTPGVQPPPPQMGEIISCCGGTV 1978
Score = 41 (19.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 124 LNGKYCTLLLKSSFMDDDDVVVAAIT 149
L+ ++++ S+ MDD++ V AA+T
Sbjct: 383 LDSSRASMMIDSN-MDDEEEVSAALT 407
>UNIPROTKB|Q767L8 [details] [associations]
symbol:MDC1 "Mediator of DNA damage checkpoint protein 1"
species:9823 "Sus scrofa" [GO:0005694 "chromosome" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
InterPro:IPR000253 InterPro:IPR008984 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 InterPro:IPR001357 GO:GO:0005634 GO:GO:0005694
GO:GO:0006281 Gene3D:2.60.200.20 SUPFAM:SSF49879 EMBL:AB113357
GO:GO:0007049 eggNOG:NOG12793 SUPFAM:SSF52113 PROSITE:PS50172
EMBL:AB113356 CTD:9656 HOVERGEN:HBG080567 OrthoDB:EOG43BMN6
HOGENOM:HOG000113506 RefSeq:NP_001116610.1 UniGene:Ssc.70644
ProteinModelPortal:Q767L8 SMR:Q767L8 STRING:Q767L8 GeneID:100144453
KEGG:ssc:100144453 Uniprot:Q767L8
Length = 2042
Score = 183 (69.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 39/116 (33%), Positives = 67/116 (57%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++
Sbjct: 1865 LGGSLASSVAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVT 1924
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
D + + L++++ RA+ R LL GY I + +QPP + I+ GG V
Sbjct: 1925 DPEQEKNFGFSLREALSRARERK--LLEGYEIHVTPGVQPPPPQMGEIISCCGGTV 1978
Score = 41 (19.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 124 LNGKYCTLLLKSSFMDDDDVVVAAIT 149
L+ ++++ S+ MDD++ V AA+T
Sbjct: 383 LDSSRASMMIDSN-MDDEEEVSAALT 407
>ZFIN|ZDB-GENE-060810-185 [details] [associations]
symbol:im:7163673 "im:7163673" species:7955 "Danio
rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000253
InterPro:IPR008984 InterPro:IPR017956 Pfam:PF00498 PROSITE:PS50006
SMART:SM00240 SMART:SM00384 InterPro:IPR001357 Pfam:PF00533
ZFIN:ZDB-GENE-060810-185 GO:GO:0003677 Gene3D:2.60.200.20
SUPFAM:SSF49879 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
GeneTree:ENSGT00600000084454 EMBL:CABZ01064955 EMBL:CU984574
EMBL:FP016064 IPI:IPI00481932 Ensembl:ENSDART00000121966
Bgee:E7FA74 Uniprot:E7FA74
Length = 1914
Score = 182 (69.1 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 41/141 (29%), Positives = 73/141 (51%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVS 459
+++ + D+S + +V+ LGG + + TH+VT K R+T+ FL A+ G IV+
Sbjct: 1704 KVLFTGLTDESGE----RVVSRLGGTLAKGVNDMTHLVTDKARRTVKFLCAVARGVPIVT 1759
Query: 460 PNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHI 519
P+WLK+ + G F+ Y+L D + K+ L+ S+ A+++ LL+GY I + +
Sbjct: 1760 PDWLKKCGKAGHFISADDYILKDIEQEKKFDFCLEKSLQTAQSQ--SLLKGYEIHVTPSV 1817
Query: 520 QPPIKTLSAIVRSAGGNVSSK 540
P + I+ G K
Sbjct: 1818 MPEPSQMKEIITCCGARFLPK 1838
Score = 38 (18.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 330 ADCHLDSDRSLASAGGETVGLSGCKP-------LREITPSNHVTVDCTGNDAKED 377
AD H+DSD + E S KP L + PS + +D + D +ED
Sbjct: 446 ADLHIDSDTDVEE---EESDASKAKPEAHNAVTLDKPAPSPGLHID-SDTDVEED 496
>POMBASE|SPBC582.05c [details] [associations]
symbol:brc1 "BRCT domain protein Brc1" species:4896
"Schizosaccharomyces pombe" [GO:0000018 "regulation of DNA
recombination" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0006301
"postreplication repair" evidence=IMP] [GO:0051276 "chromosome
organization" evidence=IGI] InterPro:IPR001357 PomBase:SPBC582.05c
Pfam:PF00533 GO:GO:0005634 GO:GO:0051301 GO:GO:0007067
EMBL:CU329671 GenomeReviews:CU329671_GR SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0051276 PIR:T37978
RefSeq:NP_595173.1 PDB:3L40 PDB:3L41 PDBsum:3L40 PDBsum:3L41
ProteinModelPortal:Q10337 STRING:Q10337 EnsemblFungi:SPBC582.05c.1
GeneID:2541071 KEGG:spo:SPBC582.05c eggNOG:NOG310206 OMA:DNTHLIT
OrthoDB:EOG4MGWGQ EvolutionaryTrace:Q10337 NextBio:20802185
GO:GO:0006301 GO:GO:0000018 Uniprot:Q10337
Length = 878
Score = 161 (61.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 39/153 (25%), Positives = 78/153 (50%)
Query: 389 SKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFL 448
S+ +N K + + + KK + ++ L ++TS+ S TH++ ++ +T FL
Sbjct: 654 SESRNTNAKASKRVYITFTGYDKKPSIDN-LKKLDMSITSNPSKCTHLIAPRILRTSKFL 712
Query: 449 TALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLL 508
++ G +V+ +W+ + VDE Y+LND + L+ L+ ++ RA+A+ LL
Sbjct: 713 CSIPYGPCVVTMDWINSCLKTHEIVDEEPYLLNDPEKELELGCTLESALKRARAQGPSLL 772
Query: 509 RGYNIIMAAHIQPP--IKTLSAIVRSAGGNVSS 539
Y + + + P + + +IV+S GG S+
Sbjct: 773 EDYVVYLTSKTVAPENVPAVISIVKSNGGVCST 805
>WB|WBGene00004031 [details] [associations]
symbol:pis-1 species:6239 "Caenorhabditis elegans"
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR001357 Pfam:PF00533 GO:GO:0040018
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:Z81122 KO:K14972
GeneTree:ENSGT00600000084454 UniGene:Cel.7278 GeneID:177818
KEGG:cel:CELE_T13F2.3 UCSC:T13F2.3a CTD:177818 HOGENOM:HOG000017169
NextBio:898512 PIR:T24887 RefSeq:NP_501748.1
ProteinModelPortal:Q9U370 SMR:Q9U370 IntAct:Q9U370 STRING:Q9U370
PRIDE:Q9U370 EnsemblMetazoa:T13F2.3b WormBase:T13F2.3b
InParanoid:Q9U370 OMA:MPEQPRQ ArrayExpress:Q9U370 Uniprot:Q9U370
Length = 1076
Score = 155 (59.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 37/133 (27%), Positives = 65/133 (48%)
Query: 408 DDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESF 467
DD L K +E LGG +THV+ R++L L ++ G I+ P W+ +S+
Sbjct: 839 DDEALTILKKKLEFLGGECVEKIRDATHVILISGRRSLVLLESIIRGKNIMDPEWIVDSY 898
Query: 468 REGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLS 527
++ ++D Y L+D + ++ K SVLRA+ +P + + ++P L
Sbjct: 899 KQKMWLDTLDYFLHDKELEKEFAYNCKRSVLRARNKP--VFEDIEFHVTRFVEPNQNDLV 956
Query: 528 AIVRSAGGNVSSK 540
++ GGNV S+
Sbjct: 957 RLIELGGGNVHSE 969
>TAIR|locus:2125442 [details] [associations]
symbol:AT4G03130 "AT4G03130" species:3702 "Arabidopsis
thaliana" [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005622 "intracellular" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR001357 Pfam:PF00533
EMBL:CP002687 SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172
IPI:IPI00537922 RefSeq:NP_192222.4 UniGene:At.50690
ProteinModelPortal:F4JI52 SMR:F4JI52 EnsemblPlants:AT4G03130.1
GeneID:828068 KEGG:ath:AT4G03130 OMA:SADSTHF Uniprot:F4JI52
Length = 766
Score = 156 (60.0 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 40/140 (28%), Positives = 69/140 (49%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVS 459
R++ DD K++ LG + S + STH + + +T N L A+ G ++V+
Sbjct: 562 RVLFSQNLDDETVKQQKKIMVRLGISPASSSADSTHFIADRFARTRNMLEAIALGKFVVT 621
Query: 460 PNWLKESFREGRFVDESSYMLNDDDYVLKYRSE--LKDSVLRAKARPGGLLRGYNIIMAA 517
P WL+ + +DE SY+L D + K + L S+ RAK P LL+G+ + +
Sbjct: 622 PIWLESCAQTRCLIDEKSYILRD---IKKEKDGFCLLTSLARAKQHP--LLKGFKVCITP 676
Query: 518 HIQPPIKTLSAIVRSAGGNV 537
I+P ++ +V+ G V
Sbjct: 677 SIKPSRGMITDLVKMTQGQV 696
Score = 39 (18.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 176 VGRLLYLELRKRLQSVGIRTIF 197
+G ++ +LRKR +R +F
Sbjct: 544 IGDFVWKDLRKRRNLAHVRVLF 565
>UNIPROTKB|F1NQT7 [details] [associations]
symbol:F1NQT7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0010468 "regulation of gene expression"
evidence=IEA] [GO:0043549 "regulation of kinase activity"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 SMART:SM00292
SUPFAM:SSF52113 PROSITE:PS50172 InterPro:IPR022047
PANTHER:PTHR14625 GeneTree:ENSGT00390000018842 EMBL:AADN02002738
EMBL:AADN02002739 EMBL:AADN02002740 EMBL:AC146336 IPI:IPI00823301
Ensembl:ENSGALT00000036955 Uniprot:F1NQT7
Length = 756
Score = 135 (52.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 29/86 (33%), Positives = 46/86 (53%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSDG--STSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V+ LG + SD T++HVVTG R+TLN + + G WI
Sbjct: 651 RTLVMTSMSSEKQSMVIQVVNKLGDFLFSDDVCETTSHVVTGSPRRTLNVMLGIARGCWI 710
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ S G ++ E Y L+ +
Sbjct: 711 VSYEWVLCSLEFGHWISEEPYELSSN 736
Score = 44 (20.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 20/106 (18%), Positives = 35/106 (33%)
Query: 210 KQDTSADTAVSLKFCFPVKP-CEKSSLVTVNRSLEAERLVMNGCSRDGAKSSGCSRSLEP 268
K++ + TA + F P C + +E V+ G + +S
Sbjct: 187 KRENLSPTASQM---FQASPRCSQGDCPLSTSLTNSEDAVLQGEKKKDCLNSSFDDFFGT 243
Query: 269 VHGSGELAAFENVHCSNMTVGAAQIGTDTGAKHCSCSQGTKRRWEA 314
V + EN C+ T + + C C Q + R +A
Sbjct: 244 VTSKRQKKEVENT-CNTQTCTHVSMSASKNSLSCGCDQKSLTRKQA 288
>UNIPROTKB|Q8NEM0 [details] [associations]
symbol:MCPH1 "Microcephalin" species:9606 "Homo sapiens"
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0010468 "regulation of
gene expression" evidence=IEA] [GO:0043549 "regulation of kinase
activity" evidence=IEA] [GO:0005815 "microtubule organizing center"
evidence=IEA] InterPro:IPR001357 Pfam:PF00533 GO:GO:0005737
GO:GO:0005815 EMBL:AC018398 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 Orphanet:2512 PDB:3T1N PDBsum:3T1N PDB:3SHV
PDB:3SZM PDB:3U3Z PDBsum:3SHV PDBsum:3SZM PDBsum:3U3Z EMBL:AX087870
EMBL:AC016065 EMBL:AF287957 EMBL:BC030702 EMBL:BK004076
EMBL:AK022909 IPI:IPI00002374 RefSeq:NP_001166045.1
RefSeq:NP_001166046.1 RefSeq:NP_078872.2 UniGene:Hs.656769
UniGene:Hs.708770 UniGene:Hs.721952 PDB:2WT8 PDB:3KTF PDB:3PA6
PDB:3SHT PDBsum:2WT8 PDBsum:3KTF PDBsum:3PA6 PDBsum:3SHT
ProteinModelPortal:Q8NEM0 SMR:Q8NEM0 DIP:DIP-39802N IntAct:Q8NEM0
STRING:Q8NEM0 PhosphoSite:Q8NEM0 DMDM:296439305 PaxDb:Q8NEM0
PRIDE:Q8NEM0 Ensembl:ENST00000344683 GeneID:79648 KEGG:hsa:79648
UCSC:uc003wqi.3 CTD:79648 GeneCards:GC08P006276 HGNC:HGNC:6954
HPA:CAB012177 HPA:HPA008238 MIM:251200 MIM:607117
neXtProt:NX_Q8NEM0 Orphanet:52183 PharmGKB:PA30701 eggNOG:NOG293743
HOGENOM:HOG000113501 HOVERGEN:HBG052433 InParanoid:Q8NEM0
OrthoDB:EOG4N30P1 ChiTaRS:MCPH1 EvolutionaryTrace:Q8NEM0
GenomeRNAi:79648 NextBio:68796 ArrayExpress:Q8NEM0 Bgee:Q8NEM0
CleanEx:HS_MCPH1 Genevestigator:Q8NEM0 InterPro:IPR022047
PANTHER:PTHR14625 Pfam:PF12258 Uniprot:Q8NEM0
Length = 835
Score = 133 (51.9 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 43/156 (27%), Positives = 73/156 (46%)
Query: 390 KEFQSNG---KCFRIMLMNIADDSKKVHLTKVIEDLGG-AVTSDG-STSTHVVTGKVRKT 444
+E + +G K R ++M K+ + +V++ L G ++ D T+THV++GK +T
Sbjct: 635 EELKKSGRGKKPTRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRT 694
Query: 445 LNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKAR 503
LN L + G W++S +W+ S G ++ E + L+ RSE L A
Sbjct: 695 LNVLLGIARGCWVLSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPY 751
Query: 504 PGGLLRGYNIIMAAHIQ-PPIKTLSAIVRSAGGNVS 538
G L ++ + PP+ L +V GG VS
Sbjct: 752 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVS 787
>TAIR|locus:2089960 [details] [associations]
symbol:AT3G21480 "AT3G21480" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001357
Pfam:PF00533 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB019232
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AB243789
IPI:IPI00534195 RefSeq:NP_188785.2 UniGene:At.38050
ProteinModelPortal:Q9LVF7 SMR:Q9LVF7 STRING:Q9LVF7 PRIDE:Q9LVF7
EnsemblPlants:AT3G21480.1 GeneID:821702 KEGG:ath:AT3G21480
TAIR:At3g21480 eggNOG:NOG238614 HOGENOM:HOG000153141
InParanoid:Q9LVF7 OMA:QTASRET PhylomeDB:Q9LVF7
ProtClustDB:CLSN2920268 Genevestigator:Q9LVF7 Uniprot:Q9LVF7
Length = 1041
Score = 139 (54.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/174 (21%), Positives = 80/174 (45%)
Query: 362 SNHVTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
++H T + P+ T + +++ + G + ++ +D K H K++
Sbjct: 784 TSHTTREFRSLTVPVAEPISETKS---TRKRRDLGSICVLFSQHLDEDVTK-HQKKILAR 839
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
+ S +TH + +T N L A+ SG +V+ WL+ + +VDE Y+L
Sbjct: 840 FDISEASSMKEATHFIADNFTRTRNMLEAIASGKPVVTTQWLESIDQVNIYVDEDMYILR 899
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
D ++ + S+ RA+ P LL+G + + + +P + T++ +V++ G
Sbjct: 900 DSKKEKEFCFNMGVSLARARQFP--LLQGRRVFITPNTKPALNTITTLVKAVHG 951
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/62 (25%), Positives = 23/62 (37%)
Query: 12 SPIPIGNCEVTVEAKKFTCESDP-NTLQISISRTAKIKIAVREDLKSSNDTTHSKSEEKG 70
SP P C +E D N ++ K++ A RE K+ D S+E
Sbjct: 524 SPSPAKACRTNIEGSS---NGDQLNKEGPCCWKSRKVQTASRETKKNLVDEFDEVSQESN 580
Query: 71 EE 72
E
Sbjct: 581 TE 582
>DICTYBASE|DDB_G0274195 [details] [associations]
symbol:DDB_G0274195 "Microcephalin" species:44689
"Dictyostelium discoideum" [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001357 dictyBase:DDB_G0274195
Pfam:PF00533 EMBL:AAFI02000012 SMART:SM00292 SUPFAM:SSF52113
PROSITE:PS50172 RefSeq:XP_644266.1 ProteinModelPortal:Q86KB4
EnsemblProtists:DDB0167567 GeneID:8619694 KEGG:ddi:DDB_G0274195
eggNOG:NOG268861 InParanoid:Q86KB4 OMA:IELASIC
ProtClustDB:CLSZ2846894 Uniprot:Q86KB4
Length = 727
Score = 123 (48.4 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 32/142 (22%), Positives = 69/142 (48%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVR-KTLNFLTALCSGAWIV 458
+++L++ +DS++ + + + +G V+ D THV+ + +TL FL + G W++
Sbjct: 539 KLVLLSGFNDSERSSIIESMGVIGLTVSDDPKECTHVIMNDSKNRTLKFLLGVSKGVWVL 598
Query: 459 SPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAH 518
+WL+ESF++ + +D N++D+ + + L + L G +A
Sbjct: 599 KRSWLEESFKQQQIID------NEEDHEVDEHPGPNMARLSQQNGDEPLFSGKTFFLAGK 652
Query: 519 IQPP---IKTLSAIVRSAGGNV 537
P K+ ++R+ GG +
Sbjct: 653 ADPSGINRKSKEELIRNLGGKI 674
Score = 46 (21.3 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 42 SRTAKIKIAVREDLKSSNDTTHSKSEEKGEEYI 74
SR K +I V + KS ND S ++K ++ I
Sbjct: 137 SRAKKEEIKVDDAAKSDNDDKESADQKKFKKNI 169
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 18 NCEVTVEAKKFTCESDPNTLQISISRTAKIKIAVREDLKSSNDTTHSKSEEKGEEYIFVL 77
N +E+ K T + L IS I + + S + ++ SKS +K +
Sbjct: 30 NNATEIESSKITSDVTTTALVISPLVDQTINKSPSQTKSSQSKSSQSKSSQKSQSESSQK 89
Query: 78 VNPKD 82
N KD
Sbjct: 90 KNGKD 94
>MGI|MGI:2443308 [details] [associations]
symbol:Mcph1 "microcephaly, primary autosomal recessive 1"
species:10090 "Mus musculus" [GO:0000132 "establishment of mitotic
spindle orientation" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856 "cytoskeleton"
evidence=IEA] [GO:0010468 "regulation of gene expression"
evidence=IGI;IMP] [GO:0021987 "cerebral cortex development"
evidence=IMP] [GO:0043549 "regulation of kinase activity"
evidence=IMP] [GO:0046605 "regulation of centrosome cycle"
evidence=IMP] [GO:0060623 "regulation of chromosome condensation"
evidence=IMP] [GO:0071539 "protein localization to centrosome"
evidence=IMP] [GO:0097150 "neuronal stem cell maintenance"
evidence=IMP] InterPro:IPR001357 MGI:MGI:2443308 Pfam:PF00533
GO:GO:0000132 GO:GO:0005737 GO:GO:0021987 GO:GO:0005815
SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0010468
GO:GO:0046605 GO:GO:0043549 GO:GO:0060623 GO:GO:0097150
GO:GO:0071539 CTD:79648 eggNOG:NOG293743 HOGENOM:HOG000113501
HOVERGEN:HBG052433 OrthoDB:EOG4N30P1 InterPro:IPR022047
PANTHER:PTHR14625 Pfam:PF12258 EMBL:AY070216 EMBL:BC056924
EMBL:AK042026 EMBL:AK083572 IPI:IPI00380788 RefSeq:NP_775281.2
UniGene:Mm.235296 ProteinModelPortal:Q7TT79 SMR:Q7TT79
STRING:Q7TT79 PhosphoSite:Q7TT79 PRIDE:Q7TT79
Ensembl:ENSMUST00000039412 GeneID:244329 KEGG:mmu:244329
UCSC:uc009kzs.1 GeneTree:ENSGT00390000018842 InParanoid:Q7TT79
OMA:GCWVLSY NextBio:386225 Bgee:Q7TT79 CleanEx:MM_MCPH1
Genevestigator:Q7TT79 GermOnline:ENSMUSG00000039842 Uniprot:Q7TT79
Length = 822
Score = 123 (48.4 bits), Expect = 0.00048, P = 0.00048
Identities = 40/152 (26%), Positives = 66/152 (43%)
Query: 390 KEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDG--STSTHVVTGKVRKTLNF 447
K+ + K R ++M K+ + +V+ L G + T+THV+ GK +TLN
Sbjct: 625 KKSEKEEKPTRTLVMTSMPSEKQTLIIQVVSTLKGFSFAPEVCETTTHVLVGKSARTLNV 684
Query: 448 LTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGL 507
L + G WI+S W+ S G ++ E + L++ + L+ L + G L
Sbjct: 685 LMGIARGCWILSYEWVLLSLELGHWISEEPFELSET-FPAAPICRLERH-LSTQQYQGTL 742
Query: 508 LRGY-NIIMAAHIQPPIKTLSAIVRSAGGNVS 538
+ +A PP L +V GG VS
Sbjct: 743 FANQPKMFIAPASSPPRAKLCELVLLCGGQVS 774
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.384 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 542 528 0.00091 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 615 (65 KB)
Total size of DFA: 304 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 43.70u 0.13s 43.83t Elapsed: 00:00:02
Total cpu time: 43.71u 0.13s 43.84t Elapsed: 00:00:02
Start: Tue May 21 05:07:58 2013 End: Tue May 21 05:08:00 2013