BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009150
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
pdb|3SQD|B Chain B, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex
Length = 219
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E FR +F+DE +Y+L
Sbjct: 39 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 98
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V SK
Sbjct: 99 DAEAEVLFSFSLEESLKRAHVSP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSK 155
>pdb|2ETX|A Chain A, Crystal Structure Of Mdc1 Tandem Brct Domains
pdb|2ETX|B Chain B, Crystal Structure Of Mdc1 Tandem Brct Domains
Length = 209
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 74/141 (52%), Gaps = 10/141 (7%)
Query: 404 MNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGA 455
+N + KV T V++ LGG++ + ++H+VT ++R+T+ FL AL G
Sbjct: 6 LNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGI 65
Query: 456 WIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIM 515
I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL GY I +
Sbjct: 66 PILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLLEGYEIYV 123
Query: 516 AAHIQPPIKTLSAIVRSAGGN 536
+QPP + I+ GG
Sbjct: 124 TPGVQPPPPQMGEIISCCGGT 144
>pdb|3K05|A Chain A, The Crystal Structure Of Mdc1 Brct T2067d In Complex With
A Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K05|B Chain B, The Crystal Structure Of Mdc1 Brct T2067d In Complex With
A Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
Length = 200
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Query: 396 GKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGA 455
G +++ + D + + + LGG++ + ++H+VT ++R+T+ FL AL G
Sbjct: 1 GTAPKVLFTGVVDARGE----RAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGI 56
Query: 456 WIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIM 515
I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL GY I +
Sbjct: 57 PILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLLEGYEIYV 114
Query: 516 AAHIQPPIKTLSAIVRSAGGN 536
+QPP + I+ GG
Sbjct: 115 TPGVQPPPPQMGEIISCCGGT 135
>pdb|2ADO|A Chain A, Crystal Structure Of The Brct Repeat Region From The
Mediator Of Dna Damage Checkpoint Protein 1, Mdc1
pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The
Mediator Of Dna Damage Checkpoint Protein 1, Mdc1
Length = 196
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 67/120 (55%), Gaps = 2/120 (1%)
Query: 417 KVIEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDES 476
+ + LGG++ + ++H+VT ++R+T+ FL AL G I+S +WL +S + G F+
Sbjct: 17 RAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPPD 76
Query: 477 SYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGN 536
Y++ D + + L+D++ RA+ R LL GY I + +QPP + I+ GG
Sbjct: 77 EYVVTDPEQEKNFGFSLQDALSRARER--RLLEGYEIYVTPGVQPPPPQMGEIISCCGGT 134
>pdb|2AZM|A Chain A, Crystal Structure Of The Mdc1 Brct Repeat In Complex With
The Histone Tail Of Gamma-H2ax
pdb|2AZM|B Chain B, Crystal Structure Of The Mdc1 Brct Repeat In Complex With
The Histone Tail Of Gamma-H2ax
Length = 207
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 404 MNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGA 455
+N + KV T V++ LGG++ + ++H+VT ++R+T+ FL AL G
Sbjct: 4 LNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGI 63
Query: 456 WIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIM 515
I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL GY I +
Sbjct: 64 PILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLLEGYEIYV 121
Query: 516 AAHIQPPIKTLSAIVRSAGGN 536
+QPP I+ GG
Sbjct: 122 TPGVQPPPPQXGEIISCCGGT 142
>pdb|3L40|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L40|B Chain B, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains
pdb|3L41|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains In
Complex With Phosphorylated H2a
Length = 220
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 419 IEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY 478
++ L ++TS+ S TH++ ++ +T FL ++ G +V+ +W+ + VDE Y
Sbjct: 25 LKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPY 84
Query: 479 MLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPP--IKTLSAIVRSAGG 535
+LND + L+ L+ ++ RA+A+ LL Y + + + P + + +IV+S GG
Sbjct: 85 LLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGG 143
>pdb|3SZM|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|C Chain C, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|D Chain D, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|E Chain E, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|F Chain F, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|G Chain G, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3SZM|H Chain H, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Gamma-H2ax Phosphopeptide
pdb|3T1N|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3T1N|B Chain B, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With A Cdc27 Phosphopeptide
pdb|3U3Z|A Chain A, Structure Of Human Microcephalin (Mcph1) Tandem Brct
Domains In Complex With An H2a.X Peptide Phosphorylated
At Ser139 And Tyr142
Length = 199
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSDG-STSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 12 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 71
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G ++ E + L+ RSE L A G L ++
Sbjct: 72 LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPYRGTLFADQPVMFV 128
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 129 SPASSPPVAKLCELVHLCGGRVS 151
>pdb|3SHT|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHT|C Chain C, Crystal Structure Of Human Mcph1 Tandem Brct Domains
pdb|3SHV|A Chain A, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
pdb|3SHV|B Chain B, Crystal Structure Of Human Mcph1 Tandem Brct Domains-Gamma
H2ax Complex
Length = 206
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSDG-STSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 19 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 78
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYN-IIM 515
+S +W+ S G ++ E + L+ RSE L A G L + +
Sbjct: 79 LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPYRGTLFADQPAMFV 135
Query: 516 AAHIQPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 136 SPASSPPVAKLCELVHLCGGRVS 158
>pdb|3AL2|A Chain A, Crystal Structure Of Topbp1 Brct78
Length = 235
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 401 IMLMNIADDSKKVHLTKVIEDLGGAVTSD---GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
I ++ + +++ +IE LGG V T TH+V G + +L ++ +G W+
Sbjct: 11 IFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWV 70
Query: 458 VSPNWLKESFREGRFVDESSY 478
+ ++L+ G FV E Y
Sbjct: 71 LHRSYLEACRTAGHFVQEEDY 91
>pdb|3AL3|A Chain A, Crystal Structure Of Topbp1 Brct78-Bach1 Peptide Complex
Length = 235
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 401 IMLMNIADDSKKVHLTKVIEDLGGAVTSD---GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
I ++ + +++ +IE LGG V T TH+V G + +L ++ +G W+
Sbjct: 11 IFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWV 70
Query: 458 VSPNWLKESFREGRFVDESSY 478
+ ++L+ G FV E Y
Sbjct: 71 LHRSYLEACRTAGHFVQEEDY 91
>pdb|1QSN|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And Histone H3 Peptide
pdb|1QSR|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Acetyl-
Coenzyme A
pdb|1Q2C|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19- Residue Histone H4 Peptide
pdb|1Q2D|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue P53 Peptide
Length = 162
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 92 LQDVLQIYSRELPTMNYAANTGKRSMFLEKCVLNGKYCTLLLKSSFMDDDDVVVAAITY- 150
L D+ I+SR+LP M ++ K V + + ++++ + + V+ I +
Sbjct: 18 LIDLKNIFSRQLPKMP--------KEYIVKLVFDRHHESMVI----LKNKQKVIGGICFR 65
Query: 151 QIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVGIRTIFCWGDKESEGFWHK 210
Q P ++AEV AV++ Q +G G L + + +Q I + + D + G++ K
Sbjct: 66 QYKP--QRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYFKK 123
Query: 211 Q 211
Q
Sbjct: 124 Q 124
>pdb|1QST|A Chain A, Crystal Structure Of Tetrahymena Gcn5
Length = 160
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 92 LQDVLQIYSRELPTMNYAANTGKRSMFLEKCVLNGKYCTLLLKSSFMDDDDVVVAAITY- 150
L D+ I+SR+LP M ++ K V + + ++++ + + V+ I +
Sbjct: 18 LIDLKNIFSRQLPKMP--------KEYIVKLVFDRHHESMVI----LKNKQKVIGGICFR 65
Query: 151 QIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVGIRTIFCWGDKESEGFWHK 210
Q P ++AEV AV++ Q +G G L + + +Q I + + D + G++ K
Sbjct: 66 QYKP--QRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYFKK 123
Query: 211 Q 211
Q
Sbjct: 124 Q 124
>pdb|1M1D|A Chain A, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|C Chain C, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1PU9|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A 19-Residue Histone H3 Peptide
pdb|1PUA|A Chain A, Crystal Structure Of Tetrahymena Gcn5 With Bound Coenzyme
A And A Phosphorylated, 19-Residue Histone H3 Peptide
Length = 163
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 92 LQDVLQIYSRELPTMNYAANTGKRSMFLEKCVLNGKYCTLLLKSSFMDDDDVVVAAITY- 150
L D+ I+SR+LP M ++ K V + + ++++ + + V+ I +
Sbjct: 19 LIDLKNIFSRQLPKMP--------KEYIVKLVFDRHHESMVI----LKNKQKVIGGICFR 66
Query: 151 QIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVGIRTIFCWGDKESEGFWHK 210
Q P ++AEV AV++ Q +G G L + + +Q I + + D + G++ K
Sbjct: 67 QYKP--QRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYFKK 124
Query: 211 Q 211
Q
Sbjct: 125 Q 125
>pdb|5GCN|A Chain A, Catalytic Domain Of Tetrahymena Gcn5 Histone
Acetyltransferase In Complex With Coenzyme A
Length = 166
Score = 35.8 bits (81), Expect = 0.062, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 15/121 (12%)
Query: 92 LQDVLQIYSRELPTMNYAANTGKRSMFLEKCVLNGKYCTLLLKSSFMDDDDVVVAAITY- 150
L D+ I+SR+LP M ++ K V + + ++++ + + V+ I +
Sbjct: 22 LIDLKNIFSRQLPKMP--------KEYIVKLVFDRHHESMVI----LKNKQKVIGGICFR 69
Query: 151 QIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVGIRTIFCWGDKESEGFWHK 210
Q P ++AEV AV++ Q +G G L + + +Q I + + D + G++ K
Sbjct: 70 QYKP--QRFAEVAFLAVTANEQVRGYGTRLMNKFKDHMQKQNIEYLLTYADNFAIGYFKK 127
Query: 211 Q 211
Q
Sbjct: 128 Q 128
>pdb|2ING|X Chain X, X-Ray Structure Of The Brca1 Brct Mutant M1775k
Length = 213
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 16 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 67
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 68 VSYFWVTQSIKERKMLNEHDFEVRGD 93
>pdb|1N5O|X Chain X, Structural Consequences Of A Cancer-Causing Brca1-Brct
Missense Mutation
Length = 214
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3PXE|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|B Chain B, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|C Chain C, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
pdb|3PXE|D Chain D, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: E1836k
Length = 214
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3K15|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-Terminus
pdb|3K16|A Chain A, Crystal Structure Of Brca1 Brct D1840t In Complex With A
Minimal Recognition Tetrapeptide With A Free Carboxy
C-Terminus
Length = 215
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 18 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 69
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 70 VSYFWVTQSIKERKMLNEHDFEVRGD 95
>pdb|1T2U|A Chain A, Structural Basis Of Phosphopeptide Recognition By The Brct
Domain Of Brca1: Structure Of Brca1 Missense Variant
V1809f
Length = 214
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|1JNX|X Chain X, Crystal Structure Of The Brct Repeat Region From The
Breast Cancer Associated Protein, Brca1
pdb|1T15|A Chain A, Crystal Structure Of The Brca1 Brct Domains In Complex
With The Phosphorylated Interacting Region From Bach1
Helicase
pdb|1T29|A Chain A, Crystal Structure Of The Brca1 Brct Repeats Bound To A
Phosphorylated Bach1 Peptide
pdb|1T2V|A Chain A, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|B Chain B, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|C Chain C, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|D Chain D, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1T2V|E Chain E, Structural Basis Of Phospho-Peptide Recognition By The
Brct Domain Of Brca1, Structure With Phosphopeptide
pdb|1Y98|A Chain A, Structure Of The Brct Repeats Of Brca1 Bound To A Ctip
Phosphopeptide
Length = 214
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3K0H|A Chain A, The Crystal Structure Of Brca1 Brct In Complex With A
Minimal Recognition Tetrapeptide With An Amidated
C-terminus
pdb|3K0K|A Chain A, Crystal Structure Of Brca1 Brct In Complex With A Minimal
Recognition Tetrapeptide With A Free Carboxy C-Terminus
Length = 215
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 18 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 69
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 70 VSYFWVTQSIKERKMLNEHDFEVRGD 95
>pdb|3PXD|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1835p
Length = 214
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3PXA|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: G1656d
Length = 214
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3COJ|X Chain X, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|A Chain A, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|B Chain B, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|C Chain C, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|D Chain D, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|E Chain E, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|F Chain F, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
pdb|3COJ|G Chain G, Crystal Structure Of The Brct Domains Of Human Brca1 In
Complex With A Phosphorylated Peptide From Human
Acetyl-Coa Carboxylase 1
Length = 235
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 38 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWV 89
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 90 VSYFWVTQSIKERKMLNEHDFEVRGD 115
>pdb|3PXC|X Chain X, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: R1699q
Length = 214
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV +TL + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCEQTLKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|2R1Z|A Chain A, Crystal Structure Of The Bard1 Brct Repeat
pdb|2R1Z|B Chain B, Crystal Structure Of The Bard1 Brct Repeat
Length = 209
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 427 TSDGSTSTHVVT--GKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDD 484
T ST THVV V+ TL + + +G WI+ W+K R E Y + +
Sbjct: 30 TEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEG- 88
Query: 485 YVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
RS L L K G Y + P L +V + GG + S+
Sbjct: 89 ---PRRSRLNREQLLPKLFDG----CYFYLWGTFKHHPKDNLIKLVTAGGGQILSR 137
>pdb|2NTE|A Chain A, Crystal Structure Of The Bard1 Brct Domains
pdb|2NTE|B Chain B, Crystal Structure Of The Bard1 Brct Domains
Length = 210
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 427 TSDGSTSTHVVT--GKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDD 484
T ST THVV V+ TL + + +G WI+ W+K R E Y + +
Sbjct: 31 TEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEG- 89
Query: 485 YVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
RS L L K G Y + P L +V + GG + S+
Sbjct: 90 ---PRRSRLNREQLLPKLFDG----CYFYLWGTFKHHPKDNLIKLVTAGGGQILSR 138
>pdb|3FA2|A Chain A, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
pdb|3FA2|B Chain B, Crystal Structure Of The Brca1 Associated Ring Domain
(Bard1) Tandem Brct Domains
Length = 218
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 427 TSDGSTSTHVVT--GKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDD 484
T ST THVV V+ TL + + +G WI+ W+K R E Y + +
Sbjct: 39 TEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKVCEQEEKYEIPEG- 97
Query: 485 YVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
RS L L K G Y + P L +V + GG + S+
Sbjct: 98 ---PRRSRLNREQLLPKLFDG----CYFYLWGTFKHHPKDNLIKLVTAGGGQILSR 146
>pdb|1YGH|A Chain A, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
pdb|1YGH|B Chain B, Hat Domain Of Gcn5 From Saccharomyces Cerevisiae
Length = 164
Score = 32.7 bits (73), Expect = 0.52, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 144 VVAAITYQIVPADT-QYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVG-IRTIFCWGD 201
VV ITY+ P D ++AE+ A+SS Q +G G L L+ +++ I+ + D
Sbjct: 59 VVGGITYR--PFDKREFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSNIKYFLTYAD 116
Query: 202 KESEGFWHKQ 211
+ G++ KQ
Sbjct: 117 NYAIGYFKKQ 126
>pdb|3PXB|A Chain A, Impact Of Brca1 Brct Domain Missense Substitutions On
Phospho-Peptide Recognition: T1700a
Length = 214
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
M + ++K H+T L +T + +THVV + L + + G W+
Sbjct: 17 FMLVYKFARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERALKYFLGIAGGKWV 68
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +E + ++E + + D
Sbjct: 69 VSYFWVTQSIKERKMLNEHDFEVRGD 94
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 422 LGGAVTSDGSTS-THVVTGKVRKTLNFLTALCSGAW-IVSPNWLKESFREGRFVDESSYM 479
G V D S TH++ K+R T A+ G +V NWL ES + + + ES Y+
Sbjct: 382 FGAEVVLDFSVPPTHLIAAKIR-TEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYL 440
Query: 480 L 480
L
Sbjct: 441 L 441
>pdb|1L0B|A Chain A, Crystal Structure Of Rat Brca1 Tandem-Brct Region
Length = 229
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 401 IMLMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGA 455
+M++ + ++ LT VI + +THV+ +TL + + G
Sbjct: 20 VMIVQKFAEKYRLALTDVITE----------ETTHVIIKTDAEFVCERTLKYFLGIAGGK 69
Query: 456 WIVSPNWLKESFREGRFVDESSYMLNDD 483
WIVS +W+ +S +E + + + + D
Sbjct: 70 WIVSYSWVIKSIQERKLLSVHEFEVKGD 97
>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain In Complex With Partially Bound Dmso
Length = 201
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 68 EKGEEYIFVLVNPKDAEDSCSKSYLQDVLQIYSRELPTMNYAANTGKRSMFLEKCV 123
+ G+EY F+ + P++ E S ++Y D + M+YA NT R +FL+ V
Sbjct: 122 QPGQEYNFLKMEPQEVE-SLGETYDFDSI---------MHYARNTFSRGIFLDTIV 167
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 422 LGGAVTSDGSTS-THVVTGKVRKTLNFLTALCSGAW-IVSPNWLKESFREGRFVDESSYM 479
G V D S TH++ K+R T A+ G +V NWL ES + + + ES Y+
Sbjct: 312 FGAEVVLDFSVPPTHLIAAKIR-TEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYL 370
Query: 480 L 480
L
Sbjct: 371 L 371
>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease
Domain
Length = 202
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Query: 68 EKGEEYIFVLVNPKDAEDSCSKSYLQDVLQIYSRELPTMNYAANTGKRSMFLEKCV 123
+ G+EY F+ + P++ E S ++Y D + M+YA NT R +FL+ V
Sbjct: 123 QPGQEYNFLKMEPQEVE-SLGETYDFDSI---------MHYARNTFSRGIFLDTIV 168
>pdb|4ID3|A Chain A, Crystal Structure Of The Brct Domain Of S. Cerevisiae Rev1
pdb|4ID3|B Chain B, Crystal Structure Of The Brct Domain Of S. Cerevisiae Rev1
Length = 92
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 428 SDGSTSTHVVTGKV--RKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYML 480
S T TH+V + +K + F + +VSP+W+ +S +E R + +Y L
Sbjct: 42 SSKKTVTHIVASNLPLKKRIEF-----ANYKVVSPDWIVDSVKEARLLPWQNYSL 91
>pdb|2M2I|A Chain A, Nmr Solution Structure Of Brct Domain Of Yeast Rev1
Length = 94
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 428 SDGSTSTHVVTGKV--RKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYML 480
S T TH+V + +K + F + +VSP+W+ +S +E R + +Y L
Sbjct: 43 SSKKTVTHIVASNLPLKKRIEF-----ANYKVVSPDWIVDSVKEARLLPWQNYSL 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,034,026
Number of Sequences: 62578
Number of extensions: 587566
Number of successful extensions: 1239
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 37
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)