BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009150
(542 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2
Length = 1069
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E FR +F+DE +Y+L
Sbjct: 889 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILR 948
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V SK
Sbjct: 949 DAEAEVLFSFSLEESLKRAHVSP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSK 1005
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1
Length = 984
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P WL+E F+ +FVDE +Y+L
Sbjct: 804 LGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQKFVDEQNYLLR 863
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA A P L + + I P + T+ AIV AGG V S+
Sbjct: 864 DAEAEVLFSFSLEESLRRAHASP--LFKAKYFYITPGICPSLSTMKAIVECAGGKVLSR 920
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1
Length = 1256
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH+V KV +T+ FLTA+ IV+P WL ESF+ +F +E +Y+L
Sbjct: 1076 LGGEVADTAQKCTHLVANKVTRTVKFLTAISVAKHIVTPEWLDESFKSQKFAEEQNYILR 1135
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ +A P L +G + I P + T+ AIV AGG + +K
Sbjct: 1136 DAEAEVLFCFSLEESLKKAHVNP--LFKGKYFYITPGICPSLSTMKAIVECAGGKILTK 1192
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes
GN=MDC1 PE=3 SV=1
Length = 2171
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 397 KCFRIMLMNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVRKTLNFL 448
+ R +N + KV T V++ LGG++ + ++H+VT ++R+T+ FL
Sbjct: 1961 RSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFL 2020
Query: 449 TALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLL 508
AL G I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL
Sbjct: 2021 CALGRGIPILSLDWLHQSHKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLL 2078
Query: 509 RGYNIIMAAHIQPPIKTLSAIVRSAGG 535
GY I + +QPP + I+ GG
Sbjct: 2079 EGYEIYVTPGVQPPPPQMGEIISCCGG 2105
>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus
GN=Mdc1 PE=2 SV=2
Length = 1279
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 391 EFQSNGKCFRIMLMNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVR 442
E Q N R N + KV T V++ LGG++ S + ++H+VT ++R
Sbjct: 1066 ETQGNPTRSRRTKPNQEAAAPKVLFTGVVDSRGERAVLALGGSLASSVNEASHLVTDRIR 1125
Query: 443 KTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKA 502
+T+ FL A+ G I+S NWL +S + G F+ Y++ D + + L+DS+ RA+
Sbjct: 1126 RTVKFLCAVGKGIPILSLNWLYQSRKAGCFLPPDDYLVTDPEQEKNFSFSLRDSLSRARE 1185
Query: 503 RPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
R LL Y I + +QPP + I+ GG V
Sbjct: 1186 R--RLLEDYEIHVTPGVQPPPPQMGEIISCCGGTV 1218
>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1
PE=1 SV=3
Length = 2089
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 397 KCFRIMLMNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVRKTLNFL 448
+ R +N + KV T V++ LGG++ + ++H+VT ++R+T+ FL
Sbjct: 1879 RSLRRTKLNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFL 1938
Query: 449 TALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLL 508
AL G I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL
Sbjct: 1939 CALGRGIPILSLDWLHQSRKAGFFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLL 1996
Query: 509 RGYNIIMAAHIQPPIKTLSAIVRSAGG 535
GY I + +QPP + I+ GG
Sbjct: 1997 EGYEIYVTPGVQPPPPQMGEIISCCGG 2023
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1
Length = 1056
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG V TH++ KV +T+ FLTA+ IV+P+WL+E F+ F+DE +Y+L
Sbjct: 876 LGGEVAECTKKCTHLIASKVTRTVKFLTAISVVKHIVTPDWLEECFKRQTFIDEQNYILR 935
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSK 540
D + + + L++S+ RA P L + + I P + T+ AIV AGG V +K
Sbjct: 936 DAEAEVLFSFSLEESLKRAHVSP--LFKTKYFYITPGICPSLATMKAIVECAGGKVLAK 992
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1
PE=3 SV=1
Length = 2173
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 397 KCFRIMLMNIADDSKKVHLTKVIED--------LGGAVTSDGSTSTHVVTGKVRKTLNFL 448
+ R +N + KV T V++ LGG++ + ++H+VT ++R+T+ FL
Sbjct: 1963 RSLRRTKLNQESTAPKVLFTGVVDAQGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFL 2022
Query: 449 TALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSELKDSVLRAKARPGGLL 508
AL G I+S +WL +S + G F+ Y++ D + + L+D++ RA+ R LL
Sbjct: 2023 CALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFSLQDALSRARER--RLL 2080
Query: 509 RGYNIIMAAHIQPPIKTLSAIVRSAGG 535
GY I + +QPP + I+ GG
Sbjct: 2081 EGYEIYVTPGVQPPPPQMGEIISCCGG 2107
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1
PE=3 SV=1
Length = 2042
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 6/165 (3%)
Query: 373 DAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGGAVTSDGST 432
D E+ P S + + R++ + D + + LGG++ S +
Sbjct: 1820 DQTEEEPRGVPSRSLRRTKPAQESTAPRVLFTGVVD----ARGERAVLALGGSLASSVAE 1875
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKYRSE 492
++H+VT ++R+T+ FL AL G I+S +WL +S + G F+ Y++ D + +
Sbjct: 1876 ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGCFLPPDEYVVTDPEQEKNFGFS 1935
Query: 493 LKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
L++++ RA+ R LL GY I + +QPP + I+ GG V
Sbjct: 1936 LREALSRARER--KLLEGYEIHVTPGVQPPPPQMGEIISCCGGTV 1978
>sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1
PE=1 SV=1
Length = 1707
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Query: 422 LGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLN 481
LGG++ S + ++H+VT ++R+T+ FL AL G I+S NWL +S + G F+ Y++
Sbjct: 1530 LGGSLASSVNEASHLVTDRIRRTVKFLCALGKGIPILSLNWLYQSRKAGCFLPPDDYLVT 1589
Query: 482 DDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGG 535
D + + L+DS+ RA+ R LL Y I + +QPP + I+ GG
Sbjct: 1590 DPEQEKNFSFSLRDSLCRARER--RLLEDYEIHVTPGVQPPPPQMGEIISCCGG 1641
>sp|Q10337|BRC1_SCHPO BRCT-containing protein 1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=brc1 PE=1 SV=1
Length = 878
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 419 IEDLGGAVTSDGSTSTHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY 478
++ L ++TS+ S TH++ ++ +T FL ++ G +V+ +W+ + VDE Y
Sbjct: 683 LKKLDMSITSNPSKCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKTHEIVDEEPY 742
Query: 479 MLNDDDYVLKYRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPP--IKTLSAIVRSAGG 535
+LND + L+ L+ ++ RA+A+ LL Y + + + P + + +IV+S GG
Sbjct: 743 LLNDPEKELELGCTLESALKRARAQGPSLLEDYVVYLTSKTVAPENVPAVISIVKSNGG 801
>sp|P61590|MCPH1_COLGU Microcephalin OS=Colobus guereza GN=MCPH1 PE=3 SV=1
Length = 841
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 397 KCFRIMLMNIADDSKKVHLTKVIEDLGG-AVTSDG-STSTHVVTGKVRKTLNFLTALCSG 454
K R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G
Sbjct: 651 KPTRTLVMTSMPSEKQNIVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARG 710
Query: 455 AWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNI 513
W++S +W+ S G ++ E S+ L++ R E L A G L +
Sbjct: 711 CWVLSYDWVLWSLESGHWISEESFELSNHFPAAPLCRRECH---LSAGPYRGTLFADQPV 767
Query: 514 IMAAHI-QPPIKTLSAIVRSAGGNVS 538
+ + PP+ L +V GG VS
Sbjct: 768 MFVSPASSPPVAKLCELVHLCGGRVS 793
>sp|P61594|MCPH1_PONPY Microcephalin OS=Pongo pygmaeus GN=MCPH1 PE=3 SV=1
Length = 839
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 390 KEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNF 447
K+ + K R ++M K+ + +V++ L G ++ D T+THV++GK +TLN
Sbjct: 642 KKSERGKKPTRTLVMTSMPSEKQNVIIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNV 701
Query: 448 LTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGG 506
L + G W++S +W+ S G ++ E + L++ RSE L A G
Sbjct: 702 LLGIARGCWVLSYDWVLWSLELGHWISEEPFELSNHFPAAPLCRSECH---LSAGPYRGT 758
Query: 507 LLRGYNIIMAAHI-QPPIKTLSAIVRSAGGNVS 538
L ++ + PP+ L +V GG VS
Sbjct: 759 LFADQPVMFVSPASSPPVAKLCELVHLCGGRVS 791
>sp|P61592|MCPH1_HYLLA Microcephalin OS=Hylobates lar GN=MCPH1 PE=3 SV=1
Length = 840
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 652 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 711
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G ++ E + L++ RSE L A G L ++
Sbjct: 712 LSYDWVLWSLELGHWISEEPFELSNHFPAAPLCRSECH---LSAGPYRGTLFADQPVMFV 768
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 769 SPASSPPVAKLCELVHLCGGRVS 791
>sp|Q5IFK1|MCPH1_MACFA Microcephalin OS=Macaca fascicularis GN=MCPH1 PE=2 SV=1
Length = 842
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 655 RTLVMTSMPSEKQNVVIQVVDKLKGFSIARDVCETTTHVLSGKPLRTLNVLLGIARGCWV 714
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G+++ E + L++ R E L A G L ++
Sbjct: 715 LSYDWVLWSLESGQWISEEPFELSNHFPAAPLCRRECH---LSAGPYRGTLFADQPVMFV 771
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 772 SPASSPPVAKLCELVHLCGGRVS 794
>sp|P61593|MCPH1_PANTR Microcephalin OS=Pan troglodytes GN=MCPH1 PE=3 SV=1
Length = 835
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 648 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 707
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G ++ E + L+ RSE L A G L ++
Sbjct: 708 LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPYRGTLFADQPVMFV 764
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 765 SPASSPPVAKLCELVHLCGGRVS 787
>sp|P61591|MCPH1_GORGO Microcephalin OS=Gorilla gorilla gorilla GN=MCPH1 PE=3 SV=1
Length = 835
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 648 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 707
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G ++ E + L+ RSE L A G L ++
Sbjct: 708 LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPYRGTLFADQPVMFV 764
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 765 SPASSPPVAKLCELVHLCGGRVS 787
>sp|Q8NEM0|MCPH1_HUMAN Microcephalin OS=Homo sapiens GN=MCPH1 PE=1 SV=3
Length = 835
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 7/143 (4%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGG-AVTSD-GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V++ L G ++ D T+THV++GK +TLN L + G W+
Sbjct: 648 RTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWV 707
Query: 458 VSPNWLKESFREGRFVDESSYMLNDDDYVLKY-RSELKDSVLRAKARPGGLLRGYNIIMA 516
+S +W+ S G ++ E + L+ RSE L A G L ++
Sbjct: 708 LSYDWVLWSLELGHWISEEPFELSHHFPAAPLCRSECH---LSAGPYRGTLFADQPVMFV 764
Query: 517 AHI-QPPIKTLSAIVRSAGGNVS 538
+ PP+ L +V GG VS
Sbjct: 765 SPASSPPVAKLCELVHLCGGRVS 787
>sp|Q7TT79|MCPH1_MOUSE Microcephalin OS=Mus musculus GN=Mcph1 PE=2 SV=1
Length = 822
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSDG--STSTHVVTGKVRKTLNFLTALCSGAWI 457
R ++M K+ + +V+ L G + T+THV+ GK +TLN L + G WI
Sbjct: 635 RTLVMTSMPSEKQTLIIQVVSTLKGFSFAPEVCETTTHVLVGKSARTLNVLMGIARGCWI 694
Query: 458 VSPNWLKESFREGRFVDESSYMLND 482
+S W+ S G ++ E + L++
Sbjct: 695 LSYEWVLLSLELGHWISEEPFELSE 719
>sp|Q6ZQF0|TOPB1_MOUSE DNA topoisomerase 2-binding protein 1 OS=Mus musculus GN=Topbp1 PE=1
SV=2
Length = 1515
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 379 PVCTTSAAFISKEFQSNGKCFR--IMLMNIADDSKKVHLTKVIEDLGGAVT----SDGST 432
PV A I + +++ K + + M+ + +++ ++I+DLGG+V SD S
Sbjct: 1241 PVAPQPADKIETQEETHRKVKKQYVFQMSSLNSQERIDYCRLIKDLGGSVIEKQCSDPSC 1300
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY------MLNDDDYV 486
TH+V G + +L ++ +G W++ ++L GRFV E Y +L+ V
Sbjct: 1301 -THMVVGYPLRNEKYLASMAAGKWVLHRSYLDACKTAGRFVQEEDYEWGSSSILDALPDV 1359
Query: 487 LKYRSELKDSVLRAKAR 503
+++ +L + +R + R
Sbjct: 1360 TEHQQKLALAAMRWRKR 1376
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 421 DLGGAVTSDG--STSTHVV-----TGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFV 473
+L G S ST THV+ G ++TL F+ A+ G WI++ +W+K + ++V
Sbjct: 753 ELSGVTISKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYV 812
Query: 474 DESSYMLNDDDYVLKYRSEL-KDSVLRAKARPGGLLRGYNIIMAAHIQPPIK-TLSAIVR 531
E Y + D + ++ L + L+ K + L G + + K L ++
Sbjct: 813 SEEPYEITMDVHGIREGPYLGRQRALKKKPK---LFTGLKFYIMGDFELAYKGYLQDLIV 869
Query: 532 SAGGNV 537
+AGG +
Sbjct: 870 AAGGTI 875
>sp|Q7ZZY3|TOB1B_XENLA DNA topoisomerase 2-binding protein 1-B OS=Xenopus laevis GN=topbp1-B
PE=2 SV=1
Length = 1513
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSD---GSTSTHVVTGKVRKTLNFLTALCSGAW 456
R ++ D +++ +++IE+LGG V + TH+V G + +L ++ +G W
Sbjct: 1261 RRFQLSSLDPQERIDYSQLIEELGGVVIEKQCFDPSCTHIVVGHPLRNEKYLASMAAGKW 1320
Query: 457 IVSPNWLKESFREGRFVDESSY 478
++ ++L+ RF+ E Y
Sbjct: 1321 VLHRSYLEACRAAKRFIQEEDY 1342
>sp|Q800K6|TOB1A_XENLA DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis GN=topbp1-A
PE=1 SV=2
Length = 1513
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 400 RIMLMNIADDSKKVHLTKVIEDLGGAVTSD---GSTSTHVVTGKVRKTLNFLTALCSGAW 456
R ++ D +++ +++IE+LGG V + TH+V G + +L ++ +G W
Sbjct: 1261 RRFQLSSLDPQERIDYSQLIEELGGVVIEKQCFDPSCTHIVVGHPLRNEKYLASMAAGKW 1320
Query: 457 IVSPNWLKESFREGRFVDESSY 478
++ ++L+ RF+ E Y
Sbjct: 1321 VLHRSYLEACRAAKRFIQEEDY 1342
>sp|O04251|Y4211_ARATH BRCT domain-containing protein At4g02110 OS=Arabidopsis thaliana
GN=At4g02110 PE=1 SV=3
Length = 1329
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 433 STHVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDD----DYVLK 488
+TH + ++R+T F A SG+WI+ +++ +S G+ + E Y + D +
Sbjct: 1134 ATHFIAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAIN 1193
Query: 489 YRSELKDSVLRAKARPGGLLRGYNIIMAAHIQPP-IKTLSAIVRSAGGNV 537
S K ++R K G L G I++ P + TL V++ G +
Sbjct: 1194 LESPKKWRLVREKTGHGALY-GLRIVVYGDCTIPCLDTLKRAVKAGDGTI 1242
>sp|Q92547|TOPB1_HUMAN DNA topoisomerase 2-binding protein 1 OS=Homo sapiens GN=TOPBP1 PE=1
SV=3
Length = 1522
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 401 IMLMNIADDSKKVHLTKVIEDLGGAVTSD---GSTSTHVVTGKVRKTLNFLTALCSGAWI 457
I ++ + +++ +IE LGG V T TH+V G + +L ++ +G W+
Sbjct: 1269 IFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWV 1328
Query: 458 VSPNWLKESFREGRFVDESSY 478
+ ++L+ G FV E Y
Sbjct: 1329 LHRSYLEACRTAGHFVQEEDY 1349
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 403 LMNIADDSKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWI 457
LM + ++K H+T L +T + +THV+ +TL + + G W+
Sbjct: 1655 LMLVQKFARKHHVT-----LTNLITEE---TTHVIMKTDPEFVCERTLKYFLGIAGGKWV 1706
Query: 458 VSPNWLKESFREGRFVDESSYMLNDD 483
VS W+ +S +EG+ +DE + + D
Sbjct: 1707 VSYFWVTQSIKEGKMLDEHDFEVRGD 1732
>sp|Q9BQI6|ANR32_HUMAN Ankyrin repeat domain-containing protein 32 OS=Homo sapiens
GN=ANKRD32 PE=1 SV=2
Length = 1058
Score = 40.4 bits (93), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 434 THVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY 478
TH++ ++ K+ FL A +G WI++ +++ S + GR++DE++Y
Sbjct: 44 THLIAERLCKSEKFLAACAAGKWILTKDYIIHSAKSGRWLDETTY 88
>sp|Q8R3P9|ANR32_MOUSE Ankyrin repeat domain-containing protein 32 OS=Mus musculus
GN=Ankrd32 PE=2 SV=3
Length = 1054
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 434 THVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY-----MLNDDDYVLK 488
TH++ ++ K+ FL A +G W+++ +++ S + GR++DE++Y + D Y +
Sbjct: 44 THLIAERLCKSEKFLAACAAGKWVLTKDYIIHSAKSGRWLDETTYEWGYKIEKDSHYSPQ 103
Query: 489 YRSELK--DSVLRAKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNV 537
+S K L+ PG R + +++ +L ++ + NV
Sbjct: 104 MQSAPKRWREELKRTGAPGAFHR-WKVVLLVRADKRSDSLVRVLEAGKANV 153
>sp|A6QR20|ANR32_BOVIN Ankyrin repeat domain-containing protein 32 OS=Bos taurus
GN=ANKRD32 PE=2 SV=2
Length = 1055
Score = 39.3 bits (90), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%)
Query: 434 THVVTGKVRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSY 478
TH++ ++ K+ FL A +G W+++ +++ S + GR++DE++Y
Sbjct: 44 THLIAERLCKSEKFLAACAAGKWVLTKDYIIHSAQSGRWLDETTY 88
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 410 SKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLK 464
++K H+T L +T + +THVV +TL + + G W+VS W+
Sbjct: 1669 ARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVT 1720
Query: 465 ESFREGRFVDESSYMLNDD 483
+S +EG+ ++E + + D
Sbjct: 1721 QSIKEGKMLNEHDFEVRGD 1739
>sp|P13529|POLG_PPVD Genome polyprotein OS=Plum pox potyvirus (strain D) PE=1 SV=2
Length = 3141
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V TG
Sbjct: 573 KQLLGEEC--IHFEVSKECTSRRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNTG 630
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 631 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 679
>sp|P0CK03|MVP_PPVD P3N-PIPO polyprotein OS=Plum pox potyvirus (strain D) PE=3 SV=2
Length = 1024
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V TG
Sbjct: 573 KQLLGEEC--IHFEVSKECTSRRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNTG 630
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 631 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 679
>sp|P17766|POLG_PPVNA Genome polyprotein OS=Plum pox potyvirus (isolate NAT) PE=3 SV=1
Length = 3125
Score = 36.6 bits (83), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V +G
Sbjct: 572 KQLLGEEC--IHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNSG 629
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 630 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 678
>sp|Q84934|POLG_PPVSK Genome polyprotein OS=Plum pox potyvirus (strain SK 68) PE=3 SV=1
Length = 3140
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V +G
Sbjct: 572 KQLLGEEC--IHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNSG 629
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 630 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 678
>sp|P17767|POLG_PPVRA Genome polyprotein OS=Plum pox potyvirus (strain Rankovic) PE=2
SV=2
Length = 3140
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V +G
Sbjct: 572 KQLLGEEC--IHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNSG 629
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 630 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 678
>sp|P0CK02|MVP_PPVNA P3N-PIPO polyprotein OS=Plum pox potyvirus (isolate NAT) PE=3 SV=2
Length = 1020
Score = 36.2 bits (82), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V +G
Sbjct: 572 KQLLGEEC--IHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNSG 629
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 630 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 678
>sp|P0CK04|MVP_PPVSK P3N-PIPO polyprotein OS=Plum pox potyvirus (strain SK 68) PE=3 SV=2
Length = 1026
Score = 36.2 bits (82), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 322 KKVKGSSCADCHLDSDRSLASAGGETVGLSGC-------KPLRE--ITPS-NHVTVDCTG 371
K++ G C H + + S GE C PL I+P+ NH+ V +G
Sbjct: 572 KQLLGEEC--IHFEVSKECTSKRGENFVYQCCCVTHEDGTPLESEIISPTKNHLVVGNSG 629
Query: 372 NDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIED 421
+ D P A FI+K F ML+NI +D K TK + D
Sbjct: 630 DSKYVDLPTAKGGAMFIAKAGYCYINIFLAMLININEDEAK-SFTKTVRD 678
>sp|Q6FTW5|GCN5_CANGA Histone acetyltransferase GCN5 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=GCN5 PE=3 SV=1
Length = 546
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 144 VVAAITYQIVPADTQYAEVPLAAVSSIYQHKGVGRLLYLELRKRLQSVG-IRTIFCWGDK 202
VV ITY+ Q+AE+ A+SS Q +G G L L+ +++ IR + D
Sbjct: 264 VVGGITYKPFNK-RQFAEIVFCAISSTEQVRGYGAHLMNHLKDYVRNTSDIRYFLTYADN 322
Query: 203 ESEGFWHKQDTSADTAVSLK 222
+ G++ KQ + D + K
Sbjct: 323 YAIGYFKKQGFTKDITLDKK 342
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 35.8 bits (81), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 433 STHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDD 483
+THV+ +TL + + G W+VS W+ +S +E + +DE + + D
Sbjct: 1687 TTHVIMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKILDEHDFEVRGD 1742
>sp|P41882|YPT4_CAEEL Ankyrin repeat-containing protein F37A4.4 OS=Caenorhabditis elegans
GN=F37A4.4 PE=4 SV=2
Length = 1163
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 445 LNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVL---KYRSELKDSVLR-- 499
LN L + G+ IV W+ + R+ + +++ D DY++ KY+ + D+V +
Sbjct: 990 LNLLIWIFHGSIIVRDTWMVDCLRDEKLIEK------DCDYLVEKVKYKGIIYDTVTQWS 1043
Query: 500 ---AKARPGGLLRGYNIIMAAHIQPPIKTLSAIVRSAGGNVSSKY 541
AKA L G ++ + P + +L+AI++ GG + K+
Sbjct: 1044 NAMAKA-TTPFLYGVHVALCMKNCPYLASLTAIIQGQGGTMLDKF 1087
>sp|P0CJ98|MVP_PRSVH P3N-PIPO polyprotein OS=Papaya ringspot virus (strain P / mutant
HA) PE=3 SV=2
Length = 1228
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 360 TPS-NHVTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKV 418
TP+ NH+ + +G+ D P + + +I+K+ F ML+NI ++ K TK
Sbjct: 855 TPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKKGYCYMNIFLAMLINIPENEAK-DFTKR 913
Query: 419 IEDLGGAVTSDGSTSTHVVT 438
+ DL G+ + T V T
Sbjct: 914 VRDLVGSKLGEWPTMLDVAT 933
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens GN=BRCA1
PE=1 SV=2
Length = 1863
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 23/137 (16%)
Query: 360 TPSNHVTVDCTGNDAKED-----RPVCTTSAAFISKEFQ---SNGKCFRIMLMNIADDSK 411
+P+ T D G +A E+ +P T S ++K S ML + ++
Sbjct: 1613 SPAAAHTTDTAGYNAMEESVSREKPELTASTERVNKRMSMVVSGLTPEEFML--VYKFAR 1670
Query: 412 KVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLKES 466
K H+T L +T + +THVV +TL + + G W+VS W+ +S
Sbjct: 1671 KHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQS 1722
Query: 467 FREGRFVDESSYMLNDD 483
+E + ++E + + D
Sbjct: 1723 IKERKMLNEHDFEVRGD 1739
>sp|Q01901|POLG_PRSVH Genome polyprotein OS=Papaya ringspot virus (strain P / mutant HA)
PE=3 SV=2
Length = 3344
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 360 TPS-NHVTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKV 418
TP+ NH+ + +G+ D P + + +I+K+ F ML+NI ++ K TK
Sbjct: 855 TPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKKGYCYMNIFLAMLINIPENEAK-DFTKR 913
Query: 419 IEDLGGAVTSDGSTSTHVVT 438
+ DL G+ + T V T
Sbjct: 914 VRDLVGSKLGEWPTMLDVAT 933
>sp|Q5BH83|DNLI4_EMENI DNA ligase 4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=lig4 PE=3 SV=1
Length = 1009
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
Query: 410 SKKVHLTKVIEDLGGA--VTSDGSTS-THVVTG---------KVRKTLNFLTALCSGAWI 457
S+++HL + GA TS TS THVV K+R+TL+ L I
Sbjct: 916 SQRIHLAQNTAKFAGASVTTSLKDTSITHVVVDPDFTSSELPKLRRTLSTRRKLPH---I 972
Query: 458 VSPNWLKESFREGRFVDESSYM 479
V NW+++S++E +DE +M
Sbjct: 973 VKVNWIEDSWKENTLLDEEQHM 994
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 365 VTVDCTGNDAKEDRPVCTTSAAFISKEFQSNGKCFRIMLMNIADDSKKVHLTKVIEDLGG 424
+ + T ++ + DR + + KE +M + ++K LT L
Sbjct: 1578 IKPELTSSEERADRDISMVVSGLTPKE-----------VMTVQKFAEKYRLT-----LTD 1621
Query: 425 AVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYM 479
A+T + +THV+ +TL + + G WIVS +W+ S +E R ++ +
Sbjct: 1622 AITEE---TTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVVRSIQERRLLNVHEFE 1678
Query: 480 LNDD 483
+ D
Sbjct: 1679 VKGD 1682
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca mulatta
GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 11/112 (9%)
Query: 433 STHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLKESFREGRFVDESSYMLNDDDYVL 487
+THVV +TL + + G W+VS W+ +S +E + ++E + + D V+
Sbjct: 1684 TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKMLNEHDFEVRGD--VV 1741
Query: 488 KYRSELKDSVLRAKARPG-GLLRGYNI-IMAAHIQPPIKTLSAIVRSAGGNV 537
R+ RA+ P + RG I P L +V+ G +V
Sbjct: 1742 NGRNH--QGPKRARESPDRKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASV 1791
>sp|Q9DE07|NBN_CHICK Nibrin OS=Gallus gallus GN=NBN PE=1 SV=1
Length = 753
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 408 DDSKKVHLTKVIEDLGGAVTSDGSTS-THVVTGKVRKTLNFLTALCSGAWIVSPNWLKE 465
D ++K L + I+ LGG V ++ + TH++ V+ T+ + AL G IV P + E
Sbjct: 118 DVAQKTALNEAIQQLGGLVVNEWTKECTHLIMESVKVTVKTICALICGRPIVKPEFFSE 176
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo pygmaeus
GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 410 SKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLK 464
++K H+T L +T + +THVV +TL + + G W+VS W+
Sbjct: 1669 ARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVT 1720
Query: 465 ESFREGRFVDESSYMLNDD 483
+S +E + ++E + + D
Sbjct: 1721 QSIKERKMLNEHDFEVRGD 1739
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 410 SKKVHLTKVIEDLGGAVTSDGSTSTHVVTGK-----VRKTLNFLTALCSGAWIVSPNWLK 464
++K H+T L +T + +THVV +TL + + G W+VS W+
Sbjct: 1669 ARKHHIT-----LTNLITEE---TTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVT 1720
Query: 465 ESFREGRFVDESSYMLNDD 483
+S +E + ++E + + D
Sbjct: 1721 QSIKERKMLNEHDFEVRGD 1739
>sp|Q6CXW4|GCN5_KLULA Histone acetyltransferase GCN5 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=GCN5 PE=3 SV=1
Length = 516
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 18/147 (12%)
Query: 67 EEKGEEYIFVLVNPKDAEDSCSKSYLQDVLQIYSRELPTMNYAANTGKRSMFLEKCVLNG 126
EEK + F +VN +++++ L + I+ ++LP M ++ + V +
Sbjct: 171 EEKEGKIEFRVVNNDNSKENMM--VLTGLKNIFQKQLPKMP--------KEYIARLVYDR 220
Query: 127 KYCTLLLKSSFMDDDDVVVAAITYQIVPADT-QYAEVPLAAVSSIYQHKGVGRLLYLELR 185
+ ++ + + VV ITY+ P D ++AE+ A+SS Q +G G L L+
Sbjct: 221 SHLSMAVVRKPL----TVVGGITYR--PFDKREFAEIVFCAISSTEQVRGYGAHLMNHLK 274
Query: 186 KRLQSVG-IRTIFCWGDKESEGFWHKQ 211
+++ I+ + D + G++ KQ
Sbjct: 275 DYVRATSPIKYFLTYADNYAIGYFKKQ 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,672,851
Number of Sequences: 539616
Number of extensions: 7809954
Number of successful extensions: 18135
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 18046
Number of HSP's gapped (non-prelim): 112
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)