Query         009151
Match_columns 542
No_of_seqs    179 out of 692
Neff          3.1 
Searched_HMMs 29240
Date          Mon Mar 25 19:58:25 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009151hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3dfx_A Trans-acting T-cell-spe  99.7 1.7E-17 5.9E-22  133.3   4.7   48    4-55      7-54  (63)
  2 4gat_A Nitrogen regulatory pro  99.7 2.5E-17 8.4E-22  133.4   3.8   50    2-55      7-56  (66)
  3 2vut_I AREA, nitrogen regulato  99.6 1.5E-16 5.2E-21  119.3   3.7   42    5-50      2-43  (43)
  4 1gnf_A Transcription factor GA  99.6 5.6E-16 1.9E-20  117.8   4.7   43    3-49      3-45  (46)
  5 2kae_A GATA-type transcription  99.5 4.1E-16 1.4E-20  127.9  -0.4   51    2-55      6-56  (71)
  6 4hc9_A Trans-acting T-cell-spe  99.5 1.3E-14 4.3E-19  127.7   4.3   48    4-55     59-106 (115)
  7 4hc9_A Trans-acting T-cell-spe  99.3 1.4E-12 4.8E-17  114.7   5.5   75    4-86      5-79  (115)
  8 2kqz_A Proteasomal ubiquitin r  92.5   0.058   2E-06   49.7   2.7   76  302-377    33-112 (155)
  9 2kr0_A Proteasomal ubiquitin r  90.7     0.2   7E-06   52.5   4.8   76  302-377   289-368 (411)
 10 1qyp_A RNA polymerase II; tran  46.6     3.4 0.00012   31.5  -0.5   34    5-38     16-55  (57)
 11 1dl6_A Transcription factor II  44.5      11 0.00037   29.3   2.1   33    4-39     11-43  (58)
 12 1pft_A TFIIB, PFTFIIBN; N-term  44.1     9.6 0.00033   28.0   1.7   33    4-39      5-37  (50)
 13 3k7a_M Transcription initiatio  41.9      13 0.00045   37.1   2.7   30    4-34     21-50  (345)
 14 3cng_A Nudix hydrolase; struct  40.1     9.4 0.00032   33.8   1.3   35    2-36      1-35  (189)
 15 1k81_A EIF-2-beta, probable tr  38.6     4.5 0.00016   29.0  -0.8   29    6-35      2-30  (36)
 16 2olm_A Nucleoporin-like protei  38.6      13 0.00045   33.5   2.0   46    4-51     25-70  (140)
 17 2crr_A Stromal membrane-associ  38.4      26  0.0009   31.6   3.9   47    4-52     29-76  (141)
 18 2owa_A Arfgap-like finger doma  33.3      19 0.00066   32.6   2.2   46    4-51     36-82  (138)
 19 2iqj_A Stromal membrane-associ  32.2      20 0.00068   32.2   2.1   36    4-41     27-62  (134)
 20 1tfi_A Transcriptional elongat  29.0      12 0.00041   28.4   0.1   35    4-38      9-49  (50)
 21 2g2k_A EIF-5, eukaryotic trans  26.4      13 0.00043   35.0  -0.3   29    6-34     98-127 (170)
 22 3pt3_A E3 ubiquitin-protein li  26.3      24 0.00082   31.0   1.5   39  307-345    29-68  (118)
 23 2crw_A ARF GAP 3, ADP-ribosyla  26.1      36  0.0012   31.2   2.7   47    3-51     28-75  (149)
 24 2e9h_A EIF-5, eukaryotic trans  26.1      15 0.00053   34.0   0.3   30    5-34    104-134 (157)
 25 2b0o_E UPLC1; arfgap, structur  25.5      36  0.0012   32.3   2.7   36    4-41     42-77  (301)
 26 3h0g_L DNA-directed RNA polyme  24.8      31  0.0011   27.7   1.8   33    4-41     21-53  (63)
 27 3dwd_A ADP-ribosylation factor  24.6      41  0.0014   31.0   2.7   47    3-51     37-84  (147)
 28 2p57_A GTPase-activating prote  22.8      28 0.00095   31.9   1.3   46    4-51     37-83  (144)
 29 4bbr_M Transcription initiatio  21.5      23 0.00079   35.6   0.5   30    4-34     21-50  (345)
 30 3e13_X Putative iron-uptake AB  21.2      87   0.003   28.4   4.3   57  312-368   251-318 (322)
 31 3h0g_I DNA-directed RNA polyme  20.1      23 0.00079   30.5   0.1   34    5-38     73-112 (113)

No 1  
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.68  E-value=1.7e-17  Score=133.32  Aligned_cols=48  Identities=31%  Similarity=0.655  Sum_probs=45.6

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~rkdgi   55 (542)
                      ...|.||+++.||+||+||.|+ +|||||||||+++++.   ||+.+++++|
T Consensus         7 ~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~~---RP~~~~~~~i   54 (63)
T 3dfx_A            7 GTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNIN---RPLTMKKEGI   54 (63)
T ss_dssp             TCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred             CCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCCC---CCcCcCCCcc
Confidence            4789999999999999999997 8999999999999997   9999999998


No 2  
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.66  E-value=2.5e-17  Score=133.36  Aligned_cols=50  Identities=34%  Similarity=0.740  Sum_probs=47.2

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009151            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (542)
Q Consensus         2 G~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~rkdgi   55 (542)
                      |..+.|.||++++||+||+||.|. +|||||||||++|+++   ||+.++++.|
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~---RP~~~k~~~i   56 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSLKTDVI   56 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCSC---CCGGGCCSCC
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCCC---Cchhhccccc
Confidence            567899999999999999999997 8999999999999998   9999999888


No 3  
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.62  E-value=1.5e-16  Score=119.32  Aligned_cols=42  Identities=40%  Similarity=0.884  Sum_probs=39.2

Q ss_pred             CccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCC
Q 009151            5 GPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHA   50 (542)
Q Consensus         5 r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~   50 (542)
                      +.|.+|++++||+||+||+|+ +|||||||||++||++   ||+++
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV---RPLSL   43 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC---CCCCC
T ss_pred             CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC---CCCCC
Confidence            689999999999999999997 8999999999999998   88764


No 4  
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.59  E-value=5.6e-16  Score=117.78  Aligned_cols=43  Identities=42%  Similarity=0.891  Sum_probs=39.5

Q ss_pred             CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCC
Q 009151            3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLH   49 (542)
Q Consensus         3 ~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs   49 (542)
                      ..+.|.||++++||+||+||.|. +|||||||||++||++   ||+.
T Consensus         3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~---RP~~   45 (46)
T 1gnf_A            3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN---RPLI   45 (46)
T ss_dssp             CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC---CCCC
T ss_pred             CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC---CCCC
Confidence            45789999999999999999996 8999999999999998   7864


No 5  
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54  E-value=4.1e-16  Score=127.92  Aligned_cols=51  Identities=31%  Similarity=0.465  Sum_probs=41.4

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009151            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (542)
Q Consensus         2 G~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~rkdgi   55 (542)
                      +....|+||+|++||+||+|+.+..+|||||||||+++++.   ||+.++.+.+
T Consensus         6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~~---RP~~~~~~~~   56 (71)
T 2kae_A            6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKT---RPVTAVNKYQ   56 (71)
T ss_dssp             --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHSC---CCTHHHHHHH
T ss_pred             CCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCCC---CCcccchhhh
Confidence            35689999999999999995444448999999999999987   8988876443


No 6  
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.48  E-value=1.3e-14  Score=127.72  Aligned_cols=48  Identities=31%  Similarity=0.647  Sum_probs=45.6

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPD   55 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~rkdgi   55 (542)
                      ...|+||+++.||+||+||+| .+|||||||||++|++.   ||+.++++.|
T Consensus        59 ~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~---rp~~~~~~~i  106 (115)
T 4hc9_A           59 GTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN---RPLTMKKEGI  106 (115)
T ss_dssp             TCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCGGGCCSSC
T ss_pred             cccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC---CCccccccch
Confidence            468999999999999999999 67999999999999998   9999999998


No 7  
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.31  E-value=1.4e-12  Score=114.75  Aligned_cols=75  Identities=29%  Similarity=0.509  Sum_probs=53.4

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCCCCCCcccccccccccccccccccchhhhhccC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEPDDYEDHRVSKVKSISINKNKDVKVLKRKS   83 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~rkdgi~~e~~R~~k~Ks~Si~knKe~k~lKRK~   83 (542)
                      .+.|.||+++.||+||+|+.| .+|||||||||+++|++   ||+..++...    ....+....-.++.....+.||+.
T Consensus         5 ~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~n---RP~~KpKKR~----~~~~~~~~~C~~C~t~~tp~WRr~   76 (115)
T 4hc9_A            5 GRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNGQN---RPLIKPKRRL----SAARRAGTSCANCQTTTTTLWRRN   76 (115)
T ss_dssp             -CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC---CCCSSCCCCC----CCCCCTTCCCTTTCCSCCSSCEEC
T ss_pred             CCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcccc---cccccccccc----cccccccccCCCcCCCCcceeEEC
Confidence            578999999999999999999 57999999999999998   7765443211    111122233446666777778875


Q ss_pred             CCC
Q 009151           84 NYD   86 (542)
Q Consensus        84 n~~   86 (542)
                      ...
T Consensus        77 ~~g   79 (115)
T 4hc9_A           77 ANG   79 (115)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            433


No 8  
>2kqz_A Proteasomal ubiquitin receptor ADRM1; proteasome, UCH37-binding domain, protein binding; NMR {Homo sapiens} PDB: 2l5v_A
Probab=92.51  E-value=0.058  Score=49.70  Aligned_cols=76  Identities=26%  Similarity=0.481  Sum_probs=57.3

Q ss_pred             eeccccccchHHHhhhcCHH-HHHHHHhcCCCCCC-CCCCchhhhhhchhhhhhhhhHHHHHHhhhccc--cccCCCchh
Q 009151          302 EIDLNDILNFKEFVGHLTHE-EQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVATE  377 (542)
Q Consensus       302 ~idl~d~~nf~ef~~~~t~e-eq~~l~k~lp~~d~-~~~p~sl~~mf~s~qfk~n~~~fqqll~~gvf~--~s~~~~k~e  377 (542)
                      .|||.|||.=|--+..|.++ -+++|+-|||.-.. .+=++-|+....||||+..+..|..-|..|-+.  +.-.|...+
T Consensus        33 ~~~L~dvLt~e~l~~ll~d~~~~~~L~~~LP~~~~~~~~~e~L~~~l~SPQF~Qal~~fs~AL~sG~l~~vl~qfgl~~~  112 (155)
T 2kqz_A           33 QVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAE  112 (155)
T ss_dssp             HHHHHHHTCTTTSHHHHHSHHHHHHHHHHSCSSCCCCSSHHHHHSSCCSHHHHHHHHHHHHHHHHTSSHHHHHHTTCCHH
T ss_pred             CCCHHHHhCHHHHHHHHcCHHHHHHHHhhCCCCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHhCCcHHHHHHcCCChh
Confidence            68999999644444444444 48999999997542 245688999999999999999999999999777  333455543


No 9  
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=90.68  E-value=0.2  Score=52.49  Aligned_cols=76  Identities=26%  Similarity=0.481  Sum_probs=59.0

Q ss_pred             eeccccccchHHHhhhcCHH-HHHHHHhcCCCCCC-CCCCchhhhhhchhhhhhhhhHHHHHHhhhccc--cccCCCchh
Q 009151          302 EIDLNDILNFKEFVGHLTHE-EQQQLLKYLPLNDT-TVFPDSLNSMFDSLQFKENISSFQQLLAEGVFD--LSFLGVATE  377 (542)
Q Consensus       302 ~idl~d~~nf~ef~~~~t~e-eq~~l~k~lp~~d~-~~~p~sl~~mf~s~qfk~n~~~fqqll~~gvf~--~s~~~~k~e  377 (542)
                      .|||.|||.=|.-...|.++ -+++||-|||.-+. .+=++-|++...||||..-|..|-+-|..|-+.  +.-.|.+.|
T Consensus       289 ~v~L~dvLt~e~l~pll~d~e~~erL~~~LP~~~~~~~t~e~L~e~l~SPQF~QaL~~fs~AL~sGqL~pll~qfgL~~~  368 (411)
T 2kr0_A          289 QVDLASVLTPEIMAPILANADVQERLLPYLPSGESLPQTADEIQNTLTSPQFQQALGMFSAALASGQLGPLMCQFGLPAE  368 (411)
T ss_dssp             HHHGGGTSCHHHHHHHHTSHHHHHHHGGGCCSSCCCCCSHHHHTTSCCSHHHHHHHHHHHHHHHHTSSTHHHHHHTCCHH
T ss_pred             CCCHHHhhCHHHHHHHhcCHHHHHHHHhhCCCCcCcCCCHHHHHHHhcCHHHHHHHHHHHHHHhcCCchHHHHHhCCChh
Confidence            68999999866666666655 56889999998653 245678999999999999999999999999766  233355444


No 10 
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=46.63  E-value=3.4  Score=31.46  Aligned_cols=34  Identities=29%  Similarity=0.652  Sum_probs=24.2

Q ss_pred             CccccCCCCC----CCcccCCCCCC--CccchhhhhhHHh
Q 009151            5 GPCYHCGVTS----TPLWRNGPPEK--PVLCNACGSRWRT   38 (542)
Q Consensus         5 r~CsnCgTt~----TPlWRrGP~G~--~tLCNACGL~~k~   38 (542)
                      ..|..||-..    +.+||...++.  -+.|..||-.|+-
T Consensus        16 ~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           16 ITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             CCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             eECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            5799999854    33577766552  2589999998864


No 11 
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.52  E-value=11  Score=29.28  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=23.0

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhc
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK   39 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~   39 (542)
                      ...|.+|+.+.  +-.....| .++|..||+-+.-+
T Consensus        11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~   43 (58)
T 1dl6_A           11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDR   43 (58)
T ss_dssp             CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCS
T ss_pred             cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEecc
Confidence            35799998755  44444455 46999999966543


No 12 
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=44.09  E-value=9.6  Score=28.05  Aligned_cols=33  Identities=21%  Similarity=0.452  Sum_probs=22.4

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhc
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTK   39 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~   39 (542)
                      ...|.+|+.+  ++-.....| ..+|..||+-|..+
T Consensus         5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~   37 (50)
T 1pft_A            5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEEN   37 (50)
T ss_dssp             CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCC
T ss_pred             cEeCcCCCCc--ceEEcCCCC-eEECcccCCccccc
Confidence            4689999874  343333334 57999999976644


No 13 
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=41.90  E-value=13  Score=37.09  Aligned_cols=30  Identities=23%  Similarity=0.446  Sum_probs=20.9

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhh
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS   34 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL   34 (542)
                      ...|.+|+.+.+-+-..-..| .++|..||+
T Consensus        21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~   50 (345)
T 3k7a_M           21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL   50 (345)
T ss_dssp             CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCC
T ss_pred             CCcCcCCCCCCCceEEECCCC-CEecCCCCe
Confidence            467999999753232333456 459999999


No 14 
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=40.06  E-value=9.4  Score=33.80  Aligned_cols=35  Identities=20%  Similarity=0.391  Sum_probs=26.9

Q ss_pred             CCCCccccCCCCCCCcccCCCCCCCccchhhhhhH
Q 009151            2 GKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRW   36 (542)
Q Consensus         2 G~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~   36 (542)
                      |..+-|..||+..+....+|..+....|-.||.++
T Consensus         1 ~~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~   35 (189)
T 3cng_A            1 GHMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH   35 (189)
T ss_dssp             --CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred             CCcccCchhCCccccccccCCCCcceECCCCCCcc
Confidence            56788999999998776677777677999999543


No 15 
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=38.61  E-value=4.5  Score=28.96  Aligned_cols=29  Identities=31%  Similarity=0.704  Sum_probs=21.7

Q ss_pred             ccccCCCCCCCcccCCCCCCCccchhhhhh
Q 009151            6 PCYHCGVTSTPLWRNGPPEKPVLCNACGSR   35 (542)
Q Consensus         6 ~CsnCgTt~TPlWRrGP~G~~tLCNACGL~   35 (542)
                      .|..|+...|-+-+.+..- -.-|+|||-.
T Consensus         2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~   30 (36)
T 1k81_A            2 ICRECGKPDTKIIKEGRVH-LLKCMACGAI   30 (36)
T ss_dssp             CCSSSCSCEEEEEEETTEE-EEEEETTTEE
T ss_pred             CCcCCCCCCcEEEEeCCcE-EEEhhcCCCc
Confidence            5999999999998754221 2369999974


No 16 
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=38.58  E-value=13  Score=33.53  Aligned_cols=46  Identities=15%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCCCCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHAR   51 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l~~~RPLs~r   51 (542)
                      ...|++|++. -|.|-.-..| ..+|-.|.--.|.-|++-..|.+.|.
T Consensus        25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~LG~~s~VrSl~ld   70 (140)
T 2olm_A           25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRGLNPPHRVKSISMT   70 (140)
T ss_dssp             GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTTSSSCCCEEETTTC
T ss_pred             CCcCCCCCCC-CCCceeeccC-EEEchhccchhccCCCcceeeecCCC
Confidence            4789999986 5889998888 66999997655544543233444443


No 17 
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.37  E-value=26  Score=31.64  Aligned_cols=47  Identities=17%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHARA   52 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~rk   52 (542)
                      ...|++|++. -|.|-.-..| ..+|-.|.--.|.-|++ ...|.+.|..
T Consensus        29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl~ld~   76 (141)
T 2crr_A           29 NKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKSVNLDQ   76 (141)
T ss_dssp             GSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCSSSSC
T ss_pred             CCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeECCCCC
Confidence            4689999987 4789988888 66999996666665642 2235555543


No 18 
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=33.26  E-value=19  Score=32.55  Aligned_cols=46  Identities=20%  Similarity=0.457  Sum_probs=32.8

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR   51 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r   51 (542)
                      ...|++|++.. |.|-.-..| ..+|-.|.-..|.-|++ ...|.+.+.
T Consensus        36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD   82 (138)
T 2owa_A           36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLD   82 (138)
T ss_dssp             GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTS
T ss_pred             CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcC
Confidence            47899999875 899998888 66999997766665543 123444444


No 19 
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=32.19  E-value=20  Score=32.15  Aligned_cols=36  Identities=22%  Similarity=0.512  Sum_probs=29.0

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT   41 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~   41 (542)
                      ...|++|++.. |.|-.-..| ..+|-.|.--.|.-|+
T Consensus        27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~lG~   62 (134)
T 2iqj_A           27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRNLGV   62 (134)
T ss_dssp             GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred             CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhcCCC
Confidence            47899999875 889998888 6699999766666565


No 20 
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.96  E-value=12  Score=28.43  Aligned_cols=35  Identities=29%  Similarity=0.659  Sum_probs=24.5

Q ss_pred             CCccccCCCCCCCcc----cCCCCCCC--ccchhhhhhHHh
Q 009151            4 QGPCYHCGVTSTPLW----RNGPPEKP--VLCNACGSRWRT   38 (542)
Q Consensus         4 ~r~CsnCgTt~TPlW----RrGP~G~~--tLCNACGL~~k~   38 (542)
                      ...|..|+-...-.|    |+++++.-  +.|..||-+|+.
T Consensus         9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~   49 (50)
T 1tfi_A            9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF   49 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC
T ss_pred             ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEe
Confidence            357999998876555    55555421  489999998863


No 21 
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=26.41  E-value=13  Score=35.03  Aligned_cols=29  Identities=31%  Similarity=0.505  Sum_probs=21.5

Q ss_pred             ccccCCCCCCCcccCCCCC-CCccchhhhh
Q 009151            6 PCYHCGVTSTPLWRNGPPE-KPVLCNACGS   34 (542)
Q Consensus         6 ~CsnCgTt~TPlWRrGP~G-~~tLCNACGL   34 (542)
                      .|..|+...|-+-+....+ --.-|+|||-
T Consensus        98 lC~~C~sPdT~L~k~~~~r~~~l~C~ACGa  127 (170)
T 2g2k_A           98 LCPECENPETDLHVNPKKQTIGNSCKACGY  127 (170)
T ss_dssp             SCTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             ECCCCCCCccEEEEecCCCEEEEEccccCC
Confidence            5999999999998832212 2347999997


No 22 
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=26.29  E-value=24  Score=30.97  Aligned_cols=39  Identities=15%  Similarity=0.176  Sum_probs=24.8

Q ss_pred             cccchHHHhhhcCHHHHHHHHhcCCCCCCCCCC-chhhhh
Q 009151          307 DILNFKEFVGHLTHEEQQQLLKYLPLNDTTVFP-DSLNSM  345 (542)
Q Consensus       307 d~~nf~ef~~~~t~eeq~~l~k~lp~~d~~~~p-~sl~~m  345 (542)
                      -|-.|=+.++.||+|||.+||+|.-.-|.+.+. ..++.|
T Consensus        29 ~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l   68 (118)
T 3pt3_A           29 FKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM   68 (118)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHSCC------------
T ss_pred             HHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC
Confidence            367899999999999999999998876664442 344444


No 23 
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.15  E-value=36  Score=31.22  Aligned_cols=47  Identities=21%  Similarity=0.507  Sum_probs=33.3

Q ss_pred             CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009151            3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR   51 (542)
Q Consensus         3 ~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r   51 (542)
                      ....|++|+.. -|.|-.-..| ..+|-.|.-..|.-|++ ...|.+.+.
T Consensus        28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~LD   75 (149)
T 2crw_A           28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTELD   75 (149)
T ss_dssp             TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSSSC
T ss_pred             CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccccC
Confidence            35799999975 5789998888 66999997666665653 123555543


No 24 
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.10  E-value=15  Score=34.00  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             CccccCCCCCCCcccCCCCC-CCccchhhhh
Q 009151            5 GPCYHCGVTSTPLWRNGPPE-KPVLCNACGS   34 (542)
Q Consensus         5 r~CsnCgTt~TPlWRrGP~G-~~tLCNACGL   34 (542)
                      -.|..|+...|-+-+....+ --.-|+|||-
T Consensus       104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa  134 (157)
T 2e9h_A          104 VLCPECENPETDLHVNPKKQTIGNSCKACGY  134 (157)
T ss_dssp             TSCTTTCCSCCEEEEETTTTEEEEECSSSCC
T ss_pred             EECCCCCCCccEEEEecCCCEEEEEccCCCC
Confidence            36999999999998621111 2347999997


No 25 
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=25.46  E-value=36  Score=32.25  Aligned_cols=36  Identities=25%  Similarity=0.662  Sum_probs=28.1

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT   41 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~   41 (542)
                      ...|+.|+... |.|-.-.-| ..+|-.|.---|.-|+
T Consensus        42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr~lg~   77 (301)
T 2b0o_E           42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHRELGV   77 (301)
T ss_dssp             TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred             CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHHhhCC
Confidence            57899999965 899999998 6699999554454444


No 26 
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.83  E-value=31  Score=27.74  Aligned_cols=33  Identities=27%  Similarity=0.488  Sum_probs=23.9

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT   41 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~   41 (542)
                      ...|..||+....-     .+.+.-|..||-+.-.+.+
T Consensus        21 ~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~RILyK~R   53 (63)
T 3h0g_L           21 IYLCADCGARNTIQ-----AKEVIRCRECGHRVMYKMR   53 (63)
T ss_dssp             CCBCSSSCCBCCCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred             EEECCCCCCeeecC-----CCCceECCCCCcEEEEEec
Confidence            46899999988754     2345679999987666544


No 27 
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=24.58  E-value=41  Score=31.00  Aligned_cols=47  Identities=21%  Similarity=0.515  Sum_probs=33.2

Q ss_pred             CCCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009151            3 KQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR   51 (542)
Q Consensus         3 ~~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r   51 (542)
                      ..+.|++|+... |.|-.-..| ..+|-.|.-.-|.-|+. ...|.+.|.
T Consensus        37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~LD   84 (147)
T 3dwd_A           37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVTMD   84 (147)
T ss_dssp             TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESCC-
T ss_pred             CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCcccccccc
Confidence            357899999875 889988888 67999997766665653 122444444


No 28 
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.79  E-value=28  Score=31.90  Aligned_cols=46  Identities=22%  Similarity=0.522  Sum_probs=32.6

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhhhHHhcCCC-CCCCCCCCC
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTL-ANYTPLHAR   51 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL~~k~~G~l-~~~RPLs~r   51 (542)
                      .+.|++|+... |.|-.-..| ..+|-.|.-.-|.-|+. ...|.+.+.
T Consensus        37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl~LD   83 (144)
T 2p57_A           37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRSTELD   83 (144)
T ss_dssp             GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEESSSC
T ss_pred             CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeecccC
Confidence            47899999865 889988888 66999997766665643 223444444


No 29 
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.47  E-value=23  Score=35.60  Aligned_cols=30  Identities=23%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             CCccccCCCCCCCcccCCCCCCCccchhhhh
Q 009151            4 QGPCYHCGVTSTPLWRNGPPEKPVLCNACGS   34 (542)
Q Consensus         4 ~r~CsnCgTt~TPlWRrGP~G~~tLCNACGL   34 (542)
                      ...|.+|+...+-+--.-..| -++|..||+
T Consensus        21 ~~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGl   50 (345)
T 4bbr_M           21 VLTCPECKVYPPKIVERFSEG-DVVCALCGL   50 (345)
T ss_dssp             -CCCSSCCCSSCCEEEEGGGT-EEEETTTCB
T ss_pred             CCcCCCCCCCCCceeEECCCC-cEEeCCCCC
Confidence            357999998444343333445 469999999


No 30 
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=21.19  E-value=87  Score=28.43  Aligned_cols=57  Identities=19%  Similarity=0.333  Sum_probs=33.8

Q ss_pred             HHHhhhcCHHH-HHHHHh---cCCCCCCCCCCchhhhh-------hchhhhhhhhhHHHHHHhhhccc
Q 009151          312 KEFVGHLTHEE-QQQLLK---YLPLNDTTVFPDSLNSM-------FDSLQFKENISSFQQLLAEGVFD  368 (542)
Q Consensus       312 ~ef~~~~t~ee-q~~l~k---~lp~~d~~~~p~sl~~m-------f~s~qfk~n~~~fqqll~~gvf~  368 (542)
                      .+|+..|+.+| |..+.+   ++|....+..|+.++..       ++-.+.-+|..-..+|+.+.-|.
T Consensus       251 ~~fi~fl~s~e~q~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~  318 (322)
T 3e13_X          251 KKFMEFMLSPEIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR  318 (322)
T ss_dssp             HHHHHHHTSHHHHHHHHHTTCCEESSTTSCCCHHHHHHCCCCBCCSCHHHHHTTHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCHHHHHHHHhcCcccCCccCCCCcccCCCccccCCCcCCHHHHHHhHHHHHHHHHHhccc
Confidence            36777776665 555544   58998888888887753       22233344444444555554443


No 31 
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.10  E-value=23  Score=30.48  Aligned_cols=34  Identities=21%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             CccccCCCCCCCcc----cCCCCCCC--ccchhhhhhHHh
Q 009151            5 GPCYHCGVTSTPLW----RNGPPEKP--VLCNACGSRWRT   38 (542)
Q Consensus         5 r~CsnCgTt~TPlW----RrGP~G~~--tLCNACGL~~k~   38 (542)
                      ..|..|+-...--|    |++.++.-  +.|-.||-+|+-
T Consensus        73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~  112 (113)
T 3h0g_I           73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE  112 (113)
T ss_dssp             SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred             cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence            57999998765444    55555522  359999988874


Done!