BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009153
(542 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54802|ANAG_HUMAN Alpha-N-acetylglucosaminidase OS=Homo sapiens GN=NAGLU PE=1 SV=2
Length = 743
Score = 354 bits (909), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 199/570 (34%), Positives = 303/570 (53%), Gaps = 76/570 (13%)
Query: 1 MSNLHGWGGPLPQSWLDQQLVLQKKILVRIYELGMNPVLPAFSGNVPAALQNVFPSAKIT 60
M NLH W GPLP SW +QL LQ ++L ++ GM PVLPAF+G+VP A+ VFP +T
Sbjct: 204 MGNLHTWDGPLPPSWHIKQLYLQHRVLDQMRSFGMTPVLPAFAGHVPEAVTRVFPQVNVT 263
Query: 61 QLGNWFSVKSDPRWCCTYLLDATDPLFIEIGRAFIEQQLKEYGRTSHIYNCDTFDENTPP 120
++G+W + C++LL DP+F IG F+ + +KE+G T HIY DTF+E PP
Sbjct: 264 KMGSWGHFNCS--YSCSFLLAPEDPIFPIIGSLFLRELIKEFG-TDHIYGADTFNEMQPP 320
Query: 121 VDSPEYISSLGAAIYSGMQSGDSDAVWLMQGWLFSYDP-FWRPPQMKALLNSVPLGKLVV 179
P Y+++ A+Y M + D++AVWL+QGWLF + P FW P Q++A+L +VP G+L+V
Sbjct: 321 SSEPSYLAAATTAVYEAMTAVDTEAVWLLQGWLFQHQPQFWGPAQIRAVLGAVPRGRLLV 380
Query: 180 LDLFAEVKPIWSTSKQFYGVPYIWCMLHNFAGNIEMYGILDSIAFGPVEARTSENTTM-- 237
LDLFAE +P+++ + F G P+IWCMLHNF GN ++G L+++ GP AR N+TM
Sbjct: 381 LDLFAESQPVYTRTASFQGQPFIWCMLHNFGGNHGLFGALEAVNGGPEAARLFPNSTMVG 440
Query: 238 --------------------------------AWINQYSVRRYGRSVPAIQDAWNVLYHT 265
AW+ ++ RRYG S P AW +L +
Sbjct: 441 TGMAPEGISQNEVVYSLMAELGWRKDPVPDLAAWVTSFAARRYGVSHPDAGAAWRLLLRS 500
Query: 266 VYNCT-DGATDKNRDVIVAFPDVDPSIISVTEGKYQNYGKPVSKEAVLKSETSSYDHPHL 324
VYNC+ + NR +V P L+ TS +
Sbjct: 501 VYNCSGEACRGHNRSPLVRRPS-------------------------LQMNTS------I 529
Query: 325 WYSTSEVIRALELFIASGNELSASNTYRYDLIDLTRQALAKYANELFLNIIEAYQLNDAH 384
WY+ S+V A L + S L+ S +RYDL+DLTRQA+ + + + AY +
Sbjct: 530 WYNRSDVFEAWRLLLTSAPSLATSPAFRYDLLDLTRQAVQELVSLYYEEARSAYLSKELA 589
Query: 385 GVFQLSRRFL-ELVEDMDGLLACHDGFLLGPWLESAKQLAQNEEQEKQYEWNARTQITMW 443
+ + EL+ +D +LA FLLG WLE A+ A +E + YE N+R Q+T+W
Sbjct: 590 SLLRAGGVLAYELLPALDEVLASDSRFLLGSWLEQARAAAVSEAEADFYEQNSRYQLTLW 649
Query: 444 FDNTQEEASLLRDYGNKYWSGLLRDYYGPRAAIYFKYMIESLESGDGFRLKDWRREWIKL 503
E ++L DY NK +GL+ +YY PR ++ + +++S+ G F+ + + +L
Sbjct: 650 ----GPEGNIL-DYANKQLAGLVANYYTPRWRLFLEALVDSVAQGIPFQQHQFDKNVFQL 704
Query: 504 TNDWQNGRNVYPVESNGDALITSQWLYNKY 533
+ + YP + GD + ++ ++ KY
Sbjct: 705 EQAFVLSKQRYPSQPRGDTVDLAKKIFLKY 734
>sp|Q9NVE4|CCD87_HUMAN Coiled-coil domain-containing protein 87 OS=Homo sapiens GN=CCDC87
PE=2 SV=2
Length = 849
Score = 33.9 bits (76), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 155 SYDPFWRPPQMKALLNSVPLGKLVVLDLFAEVKPIWSTSKQFYGVP 200
S +P RPPQ +L S PL KL V L ++V + + S GVP
Sbjct: 31 SPEPQKRPPQEGRILQSFPLAKLTVASLCSQVAKLLAGSGIAAGVP 76
>sp|B7GIA2|MIAA_ANOFW tRNA dimethylallyltransferase OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=miaA PE=3 SV=1
Length = 311
Score = 32.7 bits (73), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 321 HPHLWYSTSEVIRALELFIASGNELSA-------SNTYRYDLIDLT--RQALAKYANELF 371
HP+ + VIRALE++ +G ++ Y LI LT R+ L N+
Sbjct: 151 HPN---NVRRVIRALEIYHCTGKTMTEWLKEQKRQLVYNVALIGLTMEREKLYARINQRV 207
Query: 372 LNIIEAYQLNDAHGVFQLSRRFLELVEDM--DGLLACHDGFLLGPWLESAKQLAQNEEQ- 428
+I+ + + +++ R + ++ + L A DG L E+ +QL QN +
Sbjct: 208 DQMIDQGLIEEVKRLYEQGLRDCQAIQAIGYKELYAYFDGML--TLKEAIEQLKQNSRRY 265
Query: 429 -EKQYEWNARTQITMWFDNT 447
++Q+ W WFD T
Sbjct: 266 AKRQFTWFRNQMPVQWFDMT 285
>sp|Q9PQ79|SYI_UREPA Isoleucine--tRNA ligase OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=ileS PE=3 SV=1
Length = 900
Score = 32.7 bits (73), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 38/171 (22%)
Query: 368 NELFLNIIEAYQLNDAHGVFQLSRRF-LEL----VEDMDGLLACHDGFLLGPWLESAKQL 422
NEL + +I+AY+ D V +L +F L+L E++ + C L
Sbjct: 683 NELHIKVIKAYENFDYQTVVKLFNKFILDLSSWYFENIKDDMYC---------------L 727
Query: 423 AQNEEQEKQYE----W---NARTQITMWFDNTQEEA-SLLRDYGNKYWSGLLRDYYGPRA 474
A N+ KQ + W N+ +T +T EEA S L+D NK S L D+Y ++
Sbjct: 728 AINDPIRKQIQSAVYWILKNSLIDLTPIIPHTTEEAYSFLKD-ANKKESIRLEDFYD-QS 785
Query: 475 AIYFKYMIESLESGDGFRLKDWRREWIKLTNDWQNGRNVYPVESNGDALIT 525
FK I +++ F +KD ++ N+ +N R ++ N +A +T
Sbjct: 786 QFQFKKGIAHVKA--FFSIKD------QIFNELENARKNNILKKNNEAFVT 828
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,744,184
Number of Sequences: 539616
Number of extensions: 9176831
Number of successful extensions: 19647
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 19638
Number of HSP's gapped (non-prelim): 8
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)