BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009154
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 105/416 (25%), Positives = 184/416 (44%), Gaps = 68/416 (16%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFY 62
+ ++G YR+GKS+L+N+L +GF +G + TKGIW+W P +
Sbjct: 41 VAIVGLYRTGKSYLMNKLAGKK--KGFSLGSTVQSHTKGIWMWCVP---HPKKPGHILVL 95
Query: 63 LDTEGFESIGKSNVYDDR-IFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 121
LDTEG + K + +D IFALA ++SS +YN TI + + +L + EL +
Sbjct: 96 LDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSK 155
Query: 122 VKGQD-----------VAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND-------- 162
+ V+F P VW + RDF ++ D P++
Sbjct: 156 SSPDENENEVEDSADFVSFFP-DFVWTL-RDF-----SLDLEADGQPLTPDEYLTYSLKL 208
Query: 163 -KGDKNID-MVNQIRNSLAIMGDNSTAFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQ 218
KG D N R + F +P R +L ++DEELDP +V++
Sbjct: 209 KKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVAD 268
Query: 219 LKKLVASVTRPKIVQGKF-LNGNEFVAFMEQILEALNKGEIP----STGSLVEVFNKGIL 273
+ S ++ K + G +NG + + + A++ G++P + +L ++ N +
Sbjct: 269 FCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAV 328
Query: 274 ERCLKLYNERMAKVRLPLPEQSLQ---DAHERSKKEAMDVF------DVQHFGRQHAKKS 324
++ + Y ++M + ++ LP +SLQ D H S++EA++VF DV H ++
Sbjct: 329 QKAIAHYEQQMGQ-KVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQK----- 382
Query: 325 VMQLDEEIQEAYKNVIMANEYQSSKICESLYTRCEDKMDQLQVLRLPSMAKFNAGF 380
+L ++++ + N+ SS C L LQV+ P + AG
Sbjct: 383 --ELAAQLEKKRDDFCKQNQEASSDRCSGL----------LQVIFSPLEEEVKAGI 426
>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|B Chain B, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|C Chain C, Human Atlastin-1 1-446, N440t, Gdpalf4-
pdb|4IDQ|D Chain D, Human Atlastin-1 1-446, N440t, Gdpalf4-
Length = 447
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 180/385 (46%), Gaps = 54/385 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 71 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E D+
Sbjct: 131 FLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQEDDL 188
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 189 QHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 240
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 241 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 296
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S++ E
Sbjct: 297 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEAN 356
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++M ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 357 NLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 416
Query: 323 KSVMQLDEEIQEAYKNVIMANEYQS 347
+ + QL+ EI E Y I N+ ++
Sbjct: 417 RYLQQLESEIDELYIQYIKHNDSKT 441
>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|C Chain C, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|E Chain E, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
pdb|3Q5E|G Chain G, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 2
Length = 447
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 178/382 (46%), Gaps = 54/382 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E D+
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQEDDL 187
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 188 QHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 239
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 240 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 295
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S++ E
Sbjct: 296 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEAN 355
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++M ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 356 NLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415
Query: 323 KSVMQLDEEIQEAYKNVIMANE 344
+ + QL+ EI E Y I N+
Sbjct: 416 RYLQQLESEIDELYIQYIKHND 437
>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Hexagonal Form
pdb|3QOF|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|B Chain B, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|C Chain C, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
pdb|3QOF|D Chain D, Crystal Structure Of The Cytosolic Domain Of Human
Atlastin-1 In Complex With Gdp, Orthorhombic Form
Length = 459
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 178/382 (46%), Gaps = 54/382 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 82 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 141
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E D+
Sbjct: 142 FLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQEDDL 199
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 200 QHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 251
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 252 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 307
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S++ E
Sbjct: 308 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEAN 367
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++M ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 368 NLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 427
Query: 323 KSVMQLDEEIQEAYKNVIMANE 344
+ + QL+ EI E Y I N+
Sbjct: 428 RYLQQLESEIDELYIQYIKHND 449
>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDN|B Chain B, Human Atlastin-1 1-446, C-his6, Gppnhp
pdb|4IDO|A Chain A, Human Atlastin-1 1-446, C-his6, Gdpalf4-
pdb|4IDO|B Chain B, Human Atlastin-1 1-446, C-his6, Gdpalf4-
Length = 457
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 94/382 (24%), Positives = 178/382 (46%), Gaps = 54/382 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL++ +L ++ GF + +T GI +W
Sbjct: 70 VSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V +DT+G F+S +S + D +FAL+T++SS+ +YNL + ++E D+
Sbjct: 130 FLINKPDGKKVAVLLMDTQGTFDS--QSTLRDSATVFALSTMISSIQVYNLSQNVQEDDL 187
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 188 QHLQLFTE-----YGRLAMEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 239
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 240 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 295
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S++ E
Sbjct: 296 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEAN 355
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++M ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 356 NLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSR 415
Query: 323 KSVMQLDEEIQEAYKNVIMANE 344
+ + QL+ EI E Y I N+
Sbjct: 416 RYLQQLESEIDELYIQYIKHND 437
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 125/282 (44%), Gaps = 37/282 (13%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFY 62
+ ++G YR+GKS+L+N+L +GF +G + TKGIW+W P + +
Sbjct: 52 VAIVGLYRTGKSYLMNKLAGKK--KGFSLGSTVQSHTKGIWMWCVPHPKK---PGHILVL 106
Query: 63 LDTEGFESIGKSNVYDDR-IFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGR 121
LDTEG + K + +D IFALA ++SS +YN TI + + +L + EL +
Sbjct: 107 LDTEGLGDVEKGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSK 166
Query: 122 VKGQD-----------VAFEPAKLVWLIQRDFLQGKSVQEMVHDALQRVPND-------- 162
+ V+F P VW + RDF ++ D P++
Sbjct: 167 SSPDENENEVEDSADFVSFFP-DFVWTL-RDF-----SLDLEADGQPLTPDEYLTYSLKL 219
Query: 163 -KGDKNID-MVNQIRNSLAIMGDNSTAFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQ 218
KG D N R + F +P R +L ++DEELDP +V++
Sbjct: 220 KKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVAD 279
Query: 219 LKKLVASVTRPKIVQGKF-LNGNEFVAFMEQILEALNKGEIP 259
+ S ++ K + G +NG + + + A++ G++P
Sbjct: 280 FCSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLP 321
>pdb|4IDP|A Chain A, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|B Chain B, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|C Chain C, Human Atlastin-1 1-446, N440t, Gppnhp
pdb|4IDP|D Chain D, Human Atlastin-1 1-446, N440t, Gppnhp
Length = 447
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 174/385 (45%), Gaps = 54/385 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL + L ++ GF + +T GI +W
Sbjct: 71 VSVAGAFRKGKSFLXDFXLRYXYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 130
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V DT+G F+S +S + D +FAL+T +SS+ +YNL + ++E D+
Sbjct: 131 FLINKPDGKKVAVLLXDTQGTFDS--QSTLRDSATVFALSTXISSIQVYNLSQNVQEDDL 188
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 189 QHLQLFTE-----YGRLAXEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 240
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 241 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 296
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S + E
Sbjct: 297 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATAEAN 356
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++ ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 357 NLAAVATAKDTYNKKXEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKXGGEEFSR 416
Query: 323 KSVMQLDEEIQEAYKNVIMANEYQS 347
+ + QL+ EI E Y I N+ ++
Sbjct: 417 RYLQQLESEIDELYIQYIKHNDSKT 441
>pdb|3Q5D|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
Bound To Gdp, Crystal Form 1
Length = 447
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 93/382 (24%), Positives = 172/382 (45%), Gaps = 54/382 (14%)
Query: 3 IQVIGPYRSGKSFLLNQLLSLSCDE--------------GFGVGHMRDTKTKGIWVWGNP 48
+ V G +R GKSFL + L ++ GF + +T GI +W
Sbjct: 70 VSVAGAFRKGKSFLXDFXLRYXYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEI 129
Query: 49 VEM-EIDGSRTSVFYLDTEG-FESIGKSNVYDD-RIFALATVMSSVLIYNLPETIREADI 105
+ + DG + +V DT+G F+S +S + D +FAL+T +SS+ +YNL + ++E D+
Sbjct: 130 FLINKPDGKKVAVLLXDTQGTFDS--QSTLRDSATVFALSTXISSIQVYNLSQNVQEDDL 187
Query: 106 SRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA------LQRV 159
L E YGR+ ++ +P + + + RD+ E + A L++
Sbjct: 188 QHLQLFTE-----YGRLAXEETFLKPFQSLIFLVRDW---SFPYEFSYGADGGAKFLEKR 239
Query: 160 PNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHL--LRTKLCDMKDEELDPIYVKRRE 217
G+++ ++ N +R + N + F LP P L D K +E+D ++K
Sbjct: 240 LKVSGNQHEELQN-VRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIK--- 295
Query: 218 QLKKLVASVTRPKIVQGKFLNGNE-----FVAFMEQILEALNKGEIPSTGSLV----EVF 268
LK L+ + P+ + K +NGN+ V + + ++ E+P S + E
Sbjct: 296 NLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSXLQATAEAN 355
Query: 269 NKGILERCLKLYNERMAKV----RLPLPEQSLQDAHERSKKEAMDVFD--VQHFGRQHAK 322
N + YN++ ++ + L LQ H + K+E++ +F + G + ++
Sbjct: 356 NLAAVATAKDTYNKKXEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKXGGEEFSR 415
Query: 323 KSVMQLDEEIQEAYKNVIMANE 344
+ + QL+ EI E Y I N+
Sbjct: 416 RYLQQLESEIDELYIQYIKHND 437
>pdb|3E0S|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
pdb|3E0S|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
Length = 326
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 19/97 (19%)
Query: 179 AIMGDNSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQ----- 233
+ TA+ L L + D++D + +Y+ RRE+ L+ RP +
Sbjct: 67 GVFDPEKTAWMLAGLRELGKRTNDLRDSD---VYLLRREEYTSLLPPSLRPALDPFFSDL 123
Query: 234 -----------GKFLNGNEFVAFMEQILEALNKGEIP 259
++L G E+ FM + E + +GE+P
Sbjct: 124 EADKRLHHRQFCRYLTGREYSGFMTSLKEFIAEGELP 160
>pdb|1NG5|A Chain A, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
pdb|1NG5|B Chain B, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
Length = 215
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 143 LQGKSVQEMVHDALQRVPNDKGDKNIDMVNQIR--NSLAIM-----GDNSTAFSLPQPHL 195
LQGK+ + ++ +R KG +D N+++ N I+ GDN T F + + +L
Sbjct: 58 LQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDN-TMFDVLEDYL 116
Query: 196 LRTKLCDMKDEELDPIYVKRREQLKKLVASVTRPKIVQGKFLNGNEFVAFMEQILEALNK 255
++ K E D Y K + Q+ + T+ ++ F N ++ +Q L+ +
Sbjct: 117 KQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDY----QQFLDETKR 172
Query: 256 GEIPSTGSLVEVFNKGI-LERCLKLYNERMAKV 287
+ ++ V V +K + L C Y+E ++
Sbjct: 173 KSVINSDVNVTVKDKIMTLSTCEDAYSETTKRI 205
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53
Peptide
pdb|1S7G|A Chain A, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|B Chain B, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|C Chain C, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|D Chain D, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1S7G|E Chain E, Structural Basis For The Mechanism And Regulation Of Sir2
Enzymes
pdb|1YC2|A Chain A, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|B Chain B, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|C Chain C, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|D Chain D, Sir2af2-Nad-Adpribose-Nicotinamide
pdb|1YC2|E Chain E, Sir2af2-Nad-Adpribose-Nicotinamide
Length = 253
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 250 LEALNKGEIPSTGSLVEVFNKGILERCLKL----YNERMAKVRLPLPEQSLQDAHERSK 304
L+ L+ E VE FNKG + RC K R+ PLP+++L +A E +K
Sbjct: 124 LDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEAIEEAK 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,770,007
Number of Sequences: 62578
Number of extensions: 635347
Number of successful extensions: 1931
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 19
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)