Query 009154
Match_columns 542
No_of_seqs 254 out of 1199
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:04:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02263 GBP: Guanylate-bindin 100.0 1.2E-52 2.6E-57 423.9 15.8 223 1-232 22-260 (260)
2 cd01851 GBP Guanylate-binding 100.0 7E-40 1.5E-44 324.1 18.2 211 1-225 8-223 (224)
3 PF05879 RHD3: Root hair defec 100.0 2.2E-31 4.7E-36 302.5 34.0 351 6-399 1-399 (742)
4 KOG2037 Guanylate-binding prot 100.0 7.3E-33 1.6E-37 300.3 15.0 341 1-354 33-454 (552)
5 KOG2203 GTP-binding protein [G 100.0 2E-28 4.4E-33 259.2 26.6 236 2-282 39-305 (772)
6 PF02841 GBP_C: Guanylate-bind 99.9 2.1E-24 4.6E-29 222.2 19.5 157 233-390 1-167 (297)
7 KOG2037 Guanylate-binding prot 99.2 2E-12 4.3E-17 141.6 -0.4 137 2-143 70-224 (552)
8 cd01852 AIG1 AIG1 (avrRpt2-ind 98.5 1.6E-06 3.4E-11 83.8 12.3 102 2-113 2-109 (196)
9 PF04548 AIG1: AIG1 family; I 98.5 2.4E-06 5.2E-11 84.0 13.4 101 3-114 3-110 (212)
10 PF01926 MMR_HSR1: 50S ribosom 98.2 6.8E-06 1.5E-10 72.3 9.8 60 3-72 2-61 (116)
11 COG1159 Era GTPase [General fu 98.1 4.3E-06 9.3E-11 85.6 6.7 56 2-71 8-67 (298)
12 cd01853 Toc34_like Toc34-like 98.0 3.8E-05 8.2E-10 77.7 10.9 61 2-72 33-93 (249)
13 PRK00089 era GTPase Era; Revie 97.9 5.8E-05 1.3E-09 77.4 10.1 58 2-72 7-67 (292)
14 cd04163 Era Era subfamily. Er 97.7 0.00016 3.4E-09 65.5 8.8 61 2-72 5-65 (168)
15 TIGR00436 era GTP-binding prot 97.7 0.00012 2.5E-09 74.6 8.4 56 2-71 2-61 (270)
16 cd01858 NGP_1 NGP-1. Autoanti 97.7 6E-05 1.3E-09 70.2 5.8 54 2-68 104-157 (157)
17 PF02421 FeoB_N: Ferrous iron 97.6 0.00035 7.5E-09 65.9 9.8 94 2-114 2-101 (156)
18 TIGR00991 3a0901s02IAP34 GTP-b 97.6 0.0008 1.7E-08 70.1 12.7 131 2-154 40-179 (313)
19 TIGR03598 GTPase_YsxC ribosome 97.6 0.00072 1.6E-08 64.0 11.1 58 2-71 20-77 (179)
20 cd01894 EngA1 EngA1 subfamily. 97.5 0.00044 9.6E-09 62.6 8.5 59 4-72 1-59 (157)
21 TIGR00993 3a0901s04IAP86 chlor 97.5 0.00067 1.4E-08 76.6 11.2 64 2-75 120-183 (763)
22 cd04104 p47_IIGP_like p47 (47- 97.4 0.00072 1.6E-08 65.5 8.5 101 2-112 3-104 (197)
23 cd01849 YlqF_related_GTPase Yl 97.4 0.00038 8.3E-09 64.7 6.3 54 2-68 102-155 (155)
24 cd01878 HflX HflX subfamily. 97.4 0.0012 2.6E-08 63.6 10.0 59 2-70 43-101 (204)
25 PF05049 IIGP: Interferon-indu 97.3 0.0016 3.4E-08 69.5 11.5 94 3-109 38-135 (376)
26 cd01850 CDC_Septin CDC/Septin. 97.3 0.00037 8E-09 71.5 6.3 64 2-71 6-76 (276)
27 KOG1423 Ras-like GTPase ERA [C 97.2 0.00049 1.1E-08 70.9 5.8 60 3-72 75-134 (379)
28 cd00880 Era_like Era (E. coli 97.2 0.0015 3.2E-08 58.1 7.8 61 5-74 1-61 (163)
29 cd01898 Obg Obg subfamily. Th 97.1 0.002 4.3E-08 59.5 8.5 54 3-70 3-60 (170)
30 PF03193 DUF258: Protein of un 97.1 0.00041 8.8E-09 65.8 3.8 59 1-72 36-101 (161)
31 cd01876 YihA_EngB The YihA (En 97.1 0.0011 2.4E-08 60.1 6.7 57 3-71 2-58 (170)
32 cd04164 trmE TrmE (MnmE, ThdF, 97.1 0.0026 5.7E-08 57.3 9.1 61 2-72 3-63 (157)
33 cd04171 SelB SelB subfamily. 97.1 0.00087 1.9E-08 61.2 5.6 23 1-23 1-23 (164)
34 KOG0448 Mitofusin 1 GTPase, in 97.1 0.017 3.8E-07 65.1 16.5 79 59-158 207-287 (749)
35 cd01897 NOG NOG1 is a nucleola 97.1 0.0012 2.6E-08 60.9 6.5 59 1-70 1-59 (168)
36 PRK00454 engB GTP-binding prot 97.1 0.0053 1.1E-07 58.3 11.1 57 2-70 26-82 (196)
37 cd01857 HSR1_MMR1 HSR1/MMR1. 97.0 0.0014 3E-08 60.0 6.3 55 2-69 85-139 (141)
38 PRK15494 era GTPase Era; Provi 97.0 0.0039 8.5E-08 65.9 10.3 54 2-70 54-112 (339)
39 KOG4181 Uncharacterized conser 97.0 0.0019 4E-08 67.5 7.5 105 2-119 190-325 (491)
40 cd04101 RabL4 RabL4 (Rab-like4 97.0 0.0019 4E-08 59.4 6.9 60 3-68 3-62 (164)
41 PRK09563 rbgA GTPase YlqF; Rev 97.0 0.0022 4.8E-08 66.1 7.9 58 2-72 123-180 (287)
42 cd01890 LepA LepA subfamily. 97.0 0.0036 7.8E-08 58.5 8.6 102 2-108 2-112 (179)
43 cd01895 EngA2 EngA2 subfamily. 96.9 0.0071 1.5E-07 55.3 10.2 60 2-71 4-63 (174)
44 PRK12289 GTPase RsgA; Reviewed 96.9 0.0013 2.9E-08 69.8 6.0 59 2-72 174-238 (352)
45 PRK12288 GTPase RsgA; Reviewed 96.9 0.0011 2.4E-08 70.3 5.2 59 2-72 207-271 (347)
46 cd01861 Rab6 Rab6 subfamily. 96.9 0.0017 3.8E-08 59.3 5.9 57 3-68 3-59 (161)
47 PRK11058 GTPase HflX; Provisio 96.9 0.005 1.1E-07 67.1 10.1 54 2-69 199-256 (426)
48 COG5019 CDC3 Septin family pro 96.9 0.0016 3.5E-08 68.7 5.9 68 3-70 26-94 (373)
49 COG1084 Predicted GTPase [Gene 96.9 0.0061 1.3E-07 63.6 10.0 101 2-114 170-275 (346)
50 cd04142 RRP22 RRP22 subfamily. 96.8 0.0061 1.3E-07 59.2 9.3 60 2-70 2-61 (198)
51 PF00735 Septin: Septin; Inte 96.8 0.0016 3.4E-08 67.2 5.4 65 3-70 7-75 (281)
52 TIGR00231 small_GTP small GTP- 96.8 0.0022 4.8E-08 56.9 5.8 58 3-69 4-61 (161)
53 COG3596 Predicted GTPase [Gene 96.8 0.0012 2.6E-08 67.3 4.3 62 3-74 42-103 (296)
54 PF10220 DUF2146: Uncharacteri 96.8 0.4 8.7E-06 56.6 25.3 74 334-411 381-461 (895)
55 TIGR03156 GTP_HflX GTP-binding 96.8 0.0077 1.7E-07 64.0 10.5 54 2-69 191-248 (351)
56 cd00882 Ras_like_GTPase Ras-li 96.8 0.0011 2.4E-08 57.9 3.5 57 5-70 1-57 (157)
57 PRK12298 obgE GTPase CgtA; Rev 96.8 0.0023 5E-08 68.9 6.2 54 3-69 162-218 (390)
58 PF00350 Dynamin_N: Dynamin fa 96.7 0.001 2.3E-08 61.7 3.1 21 3-23 1-21 (168)
59 KOG1547 Septin CDC10 and relat 96.7 0.0018 3.9E-08 64.8 4.8 68 3-71 49-117 (336)
60 cd01868 Rab11_like Rab11-like. 96.7 0.0027 5.8E-08 58.5 5.7 57 3-68 6-62 (165)
61 PRK00093 GTP-binding protein D 96.7 0.0075 1.6E-07 65.4 10.0 99 2-110 175-279 (435)
62 TIGR03594 GTPase_EngA ribosome 96.7 0.0098 2.1E-07 64.2 10.8 98 2-109 174-277 (429)
63 cd00881 GTP_translation_factor 96.7 0.01 2.3E-07 55.3 9.6 22 3-24 2-23 (189)
64 PRK00098 GTPase RsgA; Reviewed 96.7 0.0022 4.7E-08 66.5 5.3 23 2-24 166-188 (298)
65 cd00154 Rab Rab family. Rab G 96.7 0.0032 6.9E-08 56.4 5.7 58 2-68 2-59 (159)
66 TIGR03594 GTPase_EngA ribosome 96.7 0.009 1.9E-07 64.5 10.1 55 2-70 1-59 (429)
67 cd04113 Rab4 Rab4 subfamily. 96.7 0.0032 6.9E-08 57.8 5.6 58 3-69 3-60 (161)
68 cd04106 Rab23_lke Rab23-like s 96.7 0.0045 9.8E-08 56.6 6.6 60 2-68 2-61 (162)
69 cd01887 IF2_eIF5B IF2/eIF5B (i 96.6 0.0032 6.9E-08 57.9 5.6 60 2-69 2-61 (168)
70 cd04119 RJL RJL (RabJ-Like) su 96.6 0.0037 8E-08 57.1 6.0 58 3-69 3-60 (168)
71 COG1160 Predicted GTPases [Gen 96.6 0.011 2.3E-07 64.2 10.2 92 2-111 5-108 (444)
72 cd01866 Rab2 Rab2 subfamily. 96.6 0.0037 8E-08 58.2 6.0 57 3-68 7-63 (168)
73 cd01864 Rab19 Rab19 subfamily. 96.6 0.0038 8.2E-08 57.7 6.0 57 3-68 6-62 (165)
74 TIGR00157 ribosome small subun 96.6 0.0029 6.4E-08 63.8 5.6 22 2-23 122-143 (245)
75 PF08477 Miro: Miro-like prote 96.6 0.019 4E-07 50.0 9.8 88 3-108 2-92 (119)
76 cd01854 YjeQ_engC YjeQ/EngC. 96.5 0.0049 1.1E-07 63.6 6.7 23 2-24 163-185 (287)
77 cd01896 DRG The developmentall 96.5 0.0048 1E-07 61.7 6.4 55 2-70 2-59 (233)
78 smart00175 RAB Rab subfamily o 96.5 0.005 1.1E-07 56.3 6.1 58 3-69 3-60 (164)
79 COG1116 TauB ABC-type nitrate/ 96.5 0.0043 9.3E-08 62.5 5.8 23 2-24 31-53 (248)
80 PRK00093 GTP-binding protein D 96.5 0.02 4.4E-07 62.0 11.5 55 2-70 3-61 (435)
81 cd04122 Rab14 Rab14 subfamily. 96.5 0.0053 1.2E-07 56.9 5.9 57 3-68 5-61 (166)
82 cd01879 FeoB Ferrous iron tran 96.5 0.004 8.8E-08 56.5 5.0 56 5-71 1-56 (158)
83 cd01881 Obg_like The Obg-like 96.4 0.0051 1.1E-07 56.9 5.6 53 5-70 1-56 (176)
84 cd01860 Rab5_related Rab5-rela 96.4 0.0059 1.3E-07 55.9 5.8 57 3-68 4-60 (163)
85 cd04159 Arl10_like Arl10-like 96.4 0.0055 1.2E-07 55.0 5.5 53 3-68 2-54 (159)
86 TIGR02836 spore_IV_A stage IV 96.4 0.0042 9.2E-08 67.0 5.3 70 2-71 19-104 (492)
87 cd01862 Rab7 Rab7 subfamily. 96.4 0.0066 1.4E-07 56.0 6.0 59 2-69 2-60 (172)
88 TIGR03596 GTPase_YlqF ribosome 96.4 0.01 2.2E-07 60.8 7.9 57 2-71 120-176 (276)
89 KOG2655 Septin family protein 96.4 0.0042 9E-08 65.9 5.1 66 3-70 24-91 (366)
90 PRK04213 GTP-binding protein; 96.4 0.005 1.1E-07 59.1 5.4 55 2-71 11-65 (201)
91 PRK03003 GTP-binding protein D 96.4 0.024 5.2E-07 62.5 11.4 59 2-70 213-271 (472)
92 cd01855 YqeH YqeH. YqeH is an 96.4 0.0051 1.1E-07 58.9 5.4 23 2-24 129-151 (190)
93 cd04112 Rab26 Rab26 subfamily. 96.4 0.0054 1.2E-07 58.7 5.4 58 3-68 3-60 (191)
94 cd01865 Rab3 Rab3 subfamily. 96.4 0.0073 1.6E-07 56.0 6.1 58 3-69 4-61 (165)
95 cd04118 Rab24 Rab24 subfamily. 96.3 0.0065 1.4E-07 57.8 5.8 60 3-70 3-62 (193)
96 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.3 0.0069 1.5E-07 55.9 5.8 57 3-68 5-61 (166)
97 cd04116 Rab9 Rab9 subfamily. 96.3 0.0086 1.9E-07 55.5 6.2 57 3-68 8-64 (170)
98 cd04115 Rab33B_Rab33A Rab33B/R 96.2 0.0095 2.1E-07 55.6 6.2 59 2-69 4-62 (170)
99 cd01863 Rab18 Rab18 subfamily. 96.2 0.0081 1.8E-07 55.0 5.6 58 3-69 3-60 (161)
100 cd01867 Rab8_Rab10_Rab13_like 96.2 0.0079 1.7E-07 55.9 5.5 57 3-68 6-62 (167)
101 cd04123 Rab21 Rab21 subfamily. 96.2 0.0095 2.1E-07 54.1 6.0 57 3-68 3-59 (162)
102 cd01889 SelB_euk SelB subfamil 96.2 0.016 3.5E-07 55.4 7.8 21 3-23 3-23 (192)
103 cd04145 M_R_Ras_like M-Ras/R-R 96.2 0.0093 2E-07 54.6 5.8 58 3-70 5-62 (164)
104 PRK03003 GTP-binding protein D 96.2 0.034 7.3E-07 61.4 11.1 59 2-70 40-98 (472)
105 COG0486 ThdF Predicted GTPase 96.2 0.011 2.4E-07 64.3 7.0 59 2-70 219-277 (454)
106 cd04124 RabL2 RabL2 subfamily. 96.2 0.011 2.4E-07 54.7 6.1 56 3-69 3-60 (161)
107 PF00009 GTP_EFTU: Elongation 96.1 0.0046 9.9E-08 59.2 3.5 101 2-113 5-120 (188)
108 cd04160 Arfrp1 Arfrp1 subfamil 96.1 0.009 1.9E-07 55.0 5.3 60 3-70 2-62 (167)
109 cd01884 EF_Tu EF-Tu subfamily. 96.1 0.019 4E-07 56.0 7.8 103 2-111 4-113 (195)
110 COG1161 Predicted GTPases [Gen 96.1 0.0088 1.9E-07 62.8 5.8 58 2-72 134-191 (322)
111 COG3840 ThiQ ABC-type thiamine 96.1 0.0063 1.4E-07 59.0 4.1 35 2-47 27-61 (231)
112 PRK05291 trmE tRNA modificatio 96.1 0.012 2.6E-07 64.6 6.8 59 2-70 217-275 (449)
113 TIGR00450 mnmE_trmE_thdF tRNA 96.1 0.011 2.4E-07 64.8 6.5 59 2-70 205-263 (442)
114 cd04155 Arl3 Arl3 subfamily. 96.1 0.014 3.1E-07 54.1 6.4 54 2-69 16-69 (173)
115 cd04166 CysN_ATPS CysN_ATPS su 96.0 0.025 5.5E-07 55.2 8.3 21 3-23 2-22 (208)
116 cd04139 RalA_RalB RalA/RalB su 96.0 0.011 2.4E-07 53.8 5.4 59 2-70 2-60 (164)
117 PTZ00258 GTP-binding protein; 96.0 0.0098 2.1E-07 64.0 5.7 63 2-69 23-96 (390)
118 cd00877 Ran Ran (Ras-related n 96.0 0.012 2.7E-07 54.9 5.7 60 2-70 2-61 (166)
119 cd01891 TypA_BipA TypA (tyrosi 96.0 0.011 2.3E-07 56.8 5.4 65 2-70 4-77 (194)
120 PRK09518 bifunctional cytidyla 96.0 0.045 9.7E-07 63.5 11.4 23 2-24 452-474 (712)
121 cd04110 Rab35 Rab35 subfamily. 96.0 0.012 2.7E-07 56.7 5.8 57 3-68 9-65 (199)
122 cd00879 Sar1 Sar1 subfamily. 96.0 0.017 3.6E-07 54.7 6.5 53 2-69 21-74 (190)
123 PLN03118 Rab family protein; P 96.0 0.014 3E-07 56.8 6.1 57 3-69 17-73 (211)
124 smart00178 SAR Sar1p-like memb 95.9 0.018 3.8E-07 54.9 6.5 54 2-70 19-73 (184)
125 cd01893 Miro1 Miro1 subfamily. 95.9 0.015 3.4E-07 53.9 6.0 55 3-70 3-59 (166)
126 cd04137 RheB Rheb (Ras Homolog 95.9 0.014 3E-07 54.7 5.6 54 3-69 4-60 (180)
127 cd04138 H_N_K_Ras_like H-Ras/N 95.9 0.016 3.4E-07 52.6 5.8 57 3-69 4-60 (162)
128 smart00173 RAS Ras subfamily o 95.9 0.016 3.5E-07 53.1 5.9 59 2-70 2-60 (164)
129 cd01900 YchF YchF subfamily. 95.9 0.022 4.8E-07 58.6 7.4 66 3-69 1-73 (274)
130 cd04125 RabA_like RabA-like su 95.9 0.018 3.8E-07 54.7 6.2 58 3-69 3-60 (188)
131 cd04136 Rap_like Rap-like subf 95.9 0.014 3E-07 53.3 5.4 59 2-70 3-61 (163)
132 cd04109 Rab28 Rab28 subfamily. 95.8 0.02 4.2E-07 56.1 6.6 58 3-68 3-60 (215)
133 cd00876 Ras Ras family. The R 95.8 0.018 3.8E-07 52.2 5.8 58 3-70 2-59 (160)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.8 0.019 4E-07 54.0 6.2 54 2-69 17-70 (174)
135 cd04170 EF-G_bact Elongation f 95.8 0.037 8E-07 56.2 8.7 21 3-23 2-22 (268)
136 cd04157 Arl6 Arl6 subfamily. 95.8 0.018 4E-07 52.4 6.0 55 3-69 2-56 (162)
137 cd04111 Rab39 Rab39 subfamily. 95.8 0.019 4.1E-07 56.2 6.3 59 3-69 5-63 (211)
138 cd04127 Rab27A Rab27a subfamil 95.8 0.023 4.9E-07 53.2 6.4 59 3-68 7-73 (180)
139 cd04140 ARHI_like ARHI subfami 95.7 0.02 4.3E-07 53.1 5.8 59 2-70 3-61 (165)
140 cd04117 Rab15 Rab15 subfamily. 95.7 0.022 4.8E-07 52.7 6.0 59 2-69 2-60 (161)
141 cd00157 Rho Rho (Ras homology) 95.7 0.023 5E-07 52.3 6.1 59 2-70 2-60 (171)
142 TIGR03597 GTPase_YqeH ribosome 95.7 0.019 4E-07 61.3 6.2 59 2-70 156-216 (360)
143 cd04177 RSR1 RSR1 subgroup. R 95.7 0.018 3.9E-07 53.5 5.4 58 3-70 4-61 (168)
144 cd01870 RhoA_like RhoA-like su 95.6 0.02 4.3E-07 53.3 5.5 58 3-70 4-61 (175)
145 cd04107 Rab32_Rab38 Rab38/Rab3 95.6 0.028 6E-07 54.2 6.7 58 3-69 3-61 (201)
146 CHL00071 tufA elongation facto 95.6 0.049 1.1E-06 59.0 9.2 103 2-111 14-123 (409)
147 cd04156 ARLTS1 ARLTS1 subfamil 95.6 0.027 5.9E-07 51.4 6.2 54 3-69 2-55 (160)
148 cd01886 EF-G Elongation factor 95.6 0.069 1.5E-06 54.7 9.7 94 3-104 2-105 (270)
149 cd04168 TetM_like Tet(M)-like 95.6 0.062 1.3E-06 53.9 9.2 93 3-102 2-103 (237)
150 COG1136 SalX ABC-type antimicr 95.6 0.012 2.5E-07 58.9 3.9 23 2-24 33-55 (226)
151 COG1162 Predicted GTPases [Gen 95.5 0.013 2.7E-07 60.9 4.1 58 2-72 166-230 (301)
152 cd04114 Rab30 Rab30 subfamily. 95.5 0.025 5.5E-07 52.1 5.7 59 2-69 9-67 (169)
153 PLN03110 Rab GTPase; Provision 95.5 0.024 5.1E-07 55.7 5.8 57 3-68 15-71 (216)
154 PRK12299 obgE GTPase CgtA; Rev 95.5 0.023 5E-07 60.1 6.0 53 3-69 161-217 (335)
155 cd04146 RERG_RasL11_like RERG/ 95.5 0.022 4.8E-07 52.6 5.3 58 3-70 2-59 (165)
156 PRK09601 GTP-binding protein Y 95.5 0.033 7.1E-07 59.5 7.1 64 1-69 3-77 (364)
157 cd04169 RF3 RF3 subfamily. Pe 95.5 0.048 1E-06 55.7 8.1 22 2-23 4-25 (267)
158 PRK13796 GTPase YqeH; Provisio 95.5 0.021 4.6E-07 61.0 5.7 59 2-70 162-222 (365)
159 cd04135 Tc10 TC10 subfamily. 95.5 0.027 5.9E-07 52.3 5.8 58 3-70 3-60 (174)
160 cd04108 Rab36_Rab34 Rab34/Rab3 95.4 0.031 6.8E-07 52.5 6.1 58 3-69 3-60 (170)
161 cd01859 MJ1464 MJ1464. This f 95.4 0.032 7E-07 51.5 6.1 54 2-68 103-156 (156)
162 TIGR02528 EutP ethanolamine ut 95.4 0.022 4.7E-07 51.3 4.6 21 3-23 3-23 (142)
163 PRK09554 feoB ferrous iron tra 95.3 0.022 4.9E-07 66.5 5.6 56 2-72 5-64 (772)
164 cd04154 Arl2 Arl2 subfamily. 95.3 0.031 6.8E-07 52.2 5.6 54 2-69 16-69 (173)
165 cd00878 Arf_Arl Arf (ADP-ribos 95.3 0.04 8.8E-07 50.2 6.3 53 3-69 2-54 (158)
166 smart00174 RHO Rho (Ras homolo 95.2 0.034 7.3E-07 51.6 5.6 58 3-70 1-58 (174)
167 PRK09518 bifunctional cytidyla 95.2 0.09 2E-06 61.0 10.2 59 2-70 277-335 (712)
168 cd04175 Rap1 Rap1 subgroup. T 95.2 0.032 6.9E-07 51.4 5.3 58 2-69 3-60 (164)
169 cd04167 Snu114p Snu114p subfam 95.2 0.099 2.2E-06 51.1 9.1 22 2-23 2-23 (213)
170 COG1160 Predicted GTPases [Gen 95.2 0.071 1.5E-06 58.0 8.4 102 2-113 180-287 (444)
171 cd04132 Rho4_like Rho4-like su 95.1 0.044 9.6E-07 51.7 6.2 59 2-69 2-60 (187)
172 PLN03108 Rab family protein; P 95.1 0.037 8E-07 54.1 5.8 58 3-69 9-66 (210)
173 cd01882 BMS1 Bms1. Bms1 is an 95.1 0.039 8.4E-07 54.8 5.9 52 1-67 40-92 (225)
174 CHL00189 infB translation init 95.1 0.079 1.7E-06 61.5 9.1 97 1-109 245-341 (742)
175 PF00071 Ras: Ras family; Int 95.1 0.033 7.1E-07 51.0 5.0 58 3-69 2-59 (162)
176 PRK12296 obgE GTPase CgtA; Rev 95.0 0.04 8.7E-07 61.2 6.0 52 3-69 162-217 (500)
177 TIGR02729 Obg_CgtA Obg family 94.9 0.045 9.9E-07 57.7 6.2 54 3-69 160-216 (329)
178 PTZ00132 GTP-binding nuclear p 94.9 0.051 1.1E-06 52.9 6.1 59 2-69 11-69 (215)
179 cd04151 Arl1 Arl1 subfamily. 94.9 0.06 1.3E-06 49.3 6.1 54 3-70 2-55 (158)
180 cd04162 Arl9_Arfrp2_like Arl9/ 94.8 0.049 1.1E-06 50.8 5.5 54 3-69 2-55 (164)
181 cd04141 Rit_Rin_Ric Rit/Rin/Ri 94.8 0.049 1.1E-06 51.3 5.5 58 3-70 5-62 (172)
182 cd04158 ARD1 ARD1 subfamily. 94.8 0.065 1.4E-06 50.0 6.2 53 3-69 2-54 (169)
183 cd04148 RGK RGK subfamily. Th 94.8 0.047 1E-06 53.9 5.4 60 2-69 2-61 (221)
184 cd04176 Rap2 Rap2 subgroup. T 94.7 0.058 1.3E-06 49.5 5.7 58 2-69 3-60 (163)
185 PRK12297 obgE GTPase CgtA; Rev 94.7 0.053 1.1E-06 59.2 6.2 53 3-69 161-217 (424)
186 cd04149 Arf6 Arf6 subfamily. 94.7 0.07 1.5E-06 50.0 6.3 53 3-69 12-64 (168)
187 cd04147 Ras_dva Ras-dva subfam 94.7 0.05 1.1E-06 52.4 5.4 58 3-70 2-59 (198)
188 cd01885 EF2 EF2 (for archaea a 94.7 0.13 2.9E-06 51.2 8.5 98 2-104 2-114 (222)
189 PRK04004 translation initiatio 94.7 0.14 3E-06 58.2 9.6 23 1-23 7-29 (586)
190 cd04152 Arl4_Arl7 Arl4/Arl7 su 94.7 0.078 1.7E-06 50.4 6.5 57 3-68 6-62 (183)
191 PRK12735 elongation factor Tu; 94.6 0.084 1.8E-06 57.0 7.3 102 2-110 14-122 (396)
192 cd04161 Arl2l1_Arl13_like Arl2 94.6 0.072 1.6E-06 49.7 6.0 52 3-68 2-53 (167)
193 KOG1191 Mitochondrial GTPase [ 94.6 0.051 1.1E-06 59.5 5.4 57 3-69 271-327 (531)
194 cd04144 Ras2 Ras2 subfamily. 94.5 0.048 1E-06 52.1 4.7 57 3-69 2-58 (190)
195 cd04105 SR_beta Signal recogni 94.5 0.08 1.7E-06 51.6 6.3 59 2-70 2-60 (203)
196 KOG0410 Predicted GTP binding 94.5 0.12 2.7E-06 54.0 7.7 97 2-113 180-281 (410)
197 TIGR03263 guanyl_kin guanylate 94.5 0.042 9.1E-07 51.8 4.1 23 1-23 2-24 (180)
198 PRK09866 hypothetical protein; 94.4 0.06 1.3E-06 61.2 5.7 58 1-70 70-129 (741)
199 PRK00300 gmk guanylate kinase; 94.4 0.042 9.1E-07 53.1 4.0 22 2-23 7-28 (205)
200 cd01899 Ygr210 Ygr210 subfamil 94.4 0.08 1.7E-06 55.6 6.3 62 3-69 1-80 (318)
201 COG1100 GTPase SAR1 and relate 94.3 0.065 1.4E-06 51.8 5.2 59 3-70 8-66 (219)
202 PF13207 AAA_17: AAA domain; P 94.3 0.035 7.5E-07 48.7 2.9 22 2-23 1-22 (121)
203 COG0370 FeoB Fe2+ transport sy 94.3 0.18 3.9E-06 57.3 9.2 94 2-116 5-106 (653)
204 PRK12736 elongation factor Tu; 94.3 0.12 2.5E-06 55.8 7.4 103 2-111 14-123 (394)
205 PTZ00369 Ras-like protein; Pro 94.3 0.076 1.7E-06 50.6 5.4 58 3-70 8-65 (189)
206 cd04134 Rho3 Rho3 subfamily. 94.2 0.089 1.9E-06 50.2 5.9 59 2-70 2-60 (189)
207 PF00005 ABC_tran: ABC transpo 94.2 0.034 7.3E-07 49.9 2.8 22 2-23 13-34 (137)
208 COG2262 HflX GTPases [General 94.2 0.3 6.5E-06 52.6 10.2 100 2-118 194-300 (411)
209 PLN03071 GTP-binding nuclear p 94.1 0.098 2.1E-06 51.6 6.1 59 3-70 16-74 (219)
210 cd00071 GMPK Guanosine monopho 94.0 0.052 1.1E-06 49.7 3.6 22 2-23 1-22 (137)
211 cd01892 Miro2 Miro2 subfamily. 94.0 0.1 2.2E-06 48.9 5.6 59 3-69 7-65 (169)
212 cd04128 Spg1 Spg1p. Spg1p (se 94.0 0.12 2.5E-06 49.4 6.1 59 2-69 2-60 (182)
213 COG4136 ABC-type uncharacteriz 94.0 0.083 1.8E-06 49.9 4.8 40 2-49 30-69 (213)
214 cd04130 Wrch_1 Wrch-1 subfamil 93.9 0.12 2.5E-06 48.4 5.9 58 3-70 3-60 (173)
215 COG1126 GlnQ ABC-type polar am 93.9 0.048 1E-06 54.2 3.3 22 2-23 30-51 (240)
216 PRK10218 GTP-binding protein; 93.9 0.26 5.7E-06 56.2 9.7 94 2-104 7-109 (607)
217 TIGR00235 udk uridine kinase. 93.9 0.044 9.6E-07 53.4 3.1 22 2-23 8-29 (207)
218 cd04120 Rab12 Rab12 subfamily. 93.9 0.12 2.6E-06 50.6 6.0 59 2-69 2-60 (202)
219 cd04129 Rho2 Rho2 subfamily. 93.9 0.11 2.5E-06 49.3 5.8 59 2-70 3-61 (187)
220 PLN03127 Elongation factor Tu; 93.9 0.16 3.4E-06 55.9 7.6 103 2-111 63-172 (447)
221 TIGR01425 SRP54_euk signal rec 93.8 0.041 8.8E-07 60.0 2.9 31 2-32 102-132 (429)
222 PRK09602 translation-associate 93.8 0.13 2.7E-06 55.8 6.5 23 2-24 3-25 (396)
223 PRK10751 molybdopterin-guanine 93.8 0.047 1E-06 52.5 2.9 32 1-32 7-38 (173)
224 cd03261 ABC_Org_Solvent_Resist 93.7 0.051 1.1E-06 53.8 3.2 23 2-24 28-50 (235)
225 TIGR01393 lepA GTP-binding pro 93.7 0.25 5.4E-06 56.3 9.1 68 3-70 6-82 (595)
226 cd04150 Arf1_5_like Arf1-Arf5- 93.7 0.17 3.7E-06 46.8 6.5 54 2-69 2-55 (159)
227 TIGR00176 mobB molybdopterin-g 93.7 0.04 8.6E-07 51.8 2.1 32 2-33 1-32 (155)
228 COG1120 FepC ABC-type cobalami 93.7 0.053 1.2E-06 55.3 3.2 23 2-24 30-52 (258)
229 COG3172 NadR Predicted ATPase/ 93.6 0.051 1.1E-06 51.6 2.7 23 1-23 9-31 (187)
230 COG1163 DRG Predicted GTPase [ 93.6 0.11 2.5E-06 54.3 5.5 52 3-68 66-120 (365)
231 TIGR00960 3a0501s02 Type II (G 93.5 0.06 1.3E-06 52.6 3.2 22 2-23 31-52 (216)
232 cd03225 ABC_cobalt_CbiO_domain 93.5 0.062 1.3E-06 52.2 3.2 22 2-23 29-50 (211)
233 TIGR01166 cbiO cobalt transpor 93.5 0.062 1.4E-06 51.4 3.2 23 2-24 20-42 (190)
234 TIGR00491 aIF-2 translation in 93.5 0.27 5.8E-06 56.0 8.7 24 1-24 5-28 (590)
235 TIGR03522 GldA_ABC_ATP gliding 93.4 0.086 1.9E-06 54.6 4.3 22 2-23 30-51 (301)
236 COG0218 Predicted GTPase [Gene 93.4 0.76 1.6E-05 45.2 10.5 98 3-113 27-133 (200)
237 cd03263 ABC_subfamily_A The AB 93.4 0.066 1.4E-06 52.4 3.2 22 2-23 30-51 (220)
238 cd02023 UMPK Uridine monophosp 93.3 0.054 1.2E-06 52.2 2.6 22 2-23 1-22 (198)
239 cd01874 Cdc42 Cdc42 subfamily. 93.3 0.16 3.5E-06 48.0 5.8 58 3-70 4-61 (175)
240 cd03269 ABC_putative_ATPase Th 93.3 0.068 1.5E-06 51.9 3.3 22 2-23 28-49 (210)
241 TIGR00475 selB selenocysteine- 93.3 0.24 5.3E-06 56.2 8.2 23 1-23 1-23 (581)
242 cd03265 ABC_DrrA DrrA is the A 93.3 0.068 1.5E-06 52.4 3.3 22 2-23 28-49 (220)
243 cd03226 ABC_cobalt_CbiO_domain 93.3 0.067 1.5E-06 51.8 3.2 22 2-23 28-49 (205)
244 cd01130 VirB11-like_ATPase Typ 93.3 0.37 8E-06 46.2 8.3 22 2-23 27-48 (186)
245 cd03224 ABC_TM1139_LivF_branch 93.3 0.067 1.5E-06 52.3 3.2 22 2-23 28-49 (222)
246 TIGR02673 FtsE cell division A 93.2 0.071 1.5E-06 51.9 3.2 22 2-23 30-51 (214)
247 TIGR02211 LolD_lipo_ex lipopro 93.2 0.072 1.6E-06 52.1 3.3 22 2-23 33-54 (221)
248 cd03222 ABC_RNaseL_inhibitor T 93.2 0.068 1.5E-06 51.4 3.0 22 2-23 27-48 (177)
249 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.2 0.072 1.6E-06 52.0 3.2 22 2-23 32-53 (218)
250 cd03292 ABC_FtsE_transporter F 93.2 0.073 1.6E-06 51.7 3.3 22 2-23 29-50 (214)
251 cd04131 Rnd Rnd subfamily. Th 93.2 0.18 3.9E-06 48.0 5.8 58 2-69 3-60 (178)
252 PTZ00133 ADP-ribosylation fact 93.2 0.21 4.5E-06 47.6 6.3 53 3-69 20-72 (182)
253 cd03260 ABC_PstB_phosphate_tra 93.2 0.072 1.6E-06 52.4 3.2 22 2-23 28-49 (227)
254 cd03264 ABC_drug_resistance_li 93.2 0.067 1.5E-06 52.0 2.9 22 2-23 27-48 (211)
255 cd04121 Rab40 Rab40 subfamily. 93.1 0.2 4.3E-06 48.4 6.1 59 3-70 9-67 (189)
256 TIGR02315 ABC_phnC phosphonate 93.1 0.074 1.6E-06 52.8 3.2 22 2-23 30-51 (243)
257 PRK14241 phosphate transporter 93.0 0.076 1.6E-06 53.5 3.2 22 2-23 32-53 (258)
258 PRK00049 elongation factor Tu; 93.0 0.2 4.4E-06 54.0 6.7 103 2-111 14-123 (396)
259 PRK01889 GTPase RsgA; Reviewed 93.0 0.093 2E-06 55.9 4.0 23 2-24 197-219 (356)
260 cd03238 ABC_UvrA The excision 93.0 0.079 1.7E-06 50.9 3.2 21 2-22 23-43 (176)
261 cd03216 ABC_Carb_Monos_I This 93.0 0.083 1.8E-06 49.6 3.3 22 2-23 28-49 (163)
262 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.0 0.081 1.7E-06 48.8 3.1 22 2-23 28-49 (144)
263 cd01888 eIF2_gamma eIF2-gamma 93.0 0.47 1E-05 46.0 8.6 23 1-23 1-23 (203)
264 cd03262 ABC_HisP_GlnQ_permease 93.0 0.081 1.7E-06 51.4 3.2 23 2-24 28-50 (213)
265 smart00177 ARF ARF-like small 93.0 0.19 4.2E-06 47.3 5.7 54 2-69 15-68 (175)
266 cd03235 ABC_Metallic_Cations A 93.0 0.075 1.6E-06 51.7 3.0 22 2-23 27-48 (213)
267 cd03258 ABC_MetN_methionine_tr 93.0 0.08 1.7E-06 52.3 3.2 23 2-24 33-55 (233)
268 PRK11629 lolD lipoprotein tran 93.0 0.08 1.7E-06 52.4 3.2 22 2-23 37-58 (233)
269 cd03257 ABC_NikE_OppD_transpor 93.0 0.079 1.7E-06 51.9 3.2 23 2-24 33-55 (228)
270 cd01672 TMPK Thymidine monopho 93.0 0.071 1.5E-06 50.5 2.7 34 1-34 1-34 (200)
271 cd03254 ABCC_Glucan_exporter_l 93.0 0.081 1.8E-06 52.1 3.2 23 2-24 31-53 (229)
272 TIGR03608 L_ocin_972_ABC putat 93.0 0.083 1.8E-06 51.0 3.3 23 2-24 26-48 (206)
273 cd03256 ABC_PhnC_transporter A 93.0 0.081 1.8E-06 52.4 3.2 22 2-23 29-50 (241)
274 PRK14737 gmk guanylate kinase; 92.9 0.11 2.5E-06 50.1 4.2 23 1-23 5-27 (186)
275 cd03293 ABC_NrtD_SsuB_transpor 92.9 0.084 1.8E-06 51.7 3.2 23 2-24 32-54 (220)
276 cd03259 ABC_Carb_Solutes_like 92.9 0.085 1.8E-06 51.4 3.3 22 2-23 28-49 (213)
277 PRK11124 artP arginine transpo 92.9 0.084 1.8E-06 52.5 3.3 22 2-23 30-51 (242)
278 cd03369 ABCC_NFT1 Domain 2 of 92.9 0.086 1.9E-06 51.1 3.2 22 2-23 36-57 (207)
279 cd03218 ABC_YhbG The ABC trans 92.9 0.086 1.9E-06 52.0 3.2 22 2-23 28-49 (232)
280 TIGR01189 ccmA heme ABC export 92.9 0.089 1.9E-06 50.8 3.3 22 2-23 28-49 (198)
281 KOG2485 Conserved ATP/GTP bind 92.8 0.16 3.4E-06 53.0 5.1 95 3-113 146-245 (335)
282 cd02025 PanK Pantothenate kina 92.8 0.066 1.4E-06 53.1 2.4 22 2-23 1-22 (220)
283 cd03219 ABC_Mj1267_LivG_branch 92.8 0.084 1.8E-06 52.2 3.1 22 2-23 28-49 (236)
284 PF13555 AAA_29: P-loop contai 92.8 0.11 2.3E-06 41.7 3.1 20 2-21 25-44 (62)
285 cd03268 ABC_BcrA_bacitracin_re 92.8 0.091 2E-06 51.0 3.2 22 2-23 28-49 (208)
286 TIGR01978 sufC FeS assembly AT 92.8 0.088 1.9E-06 52.2 3.2 22 2-23 28-49 (243)
287 PRK11248 tauB taurine transpor 92.8 0.088 1.9E-06 53.2 3.2 23 2-24 29-51 (255)
288 PRK14242 phosphate transporter 92.8 0.088 1.9E-06 52.7 3.2 22 2-23 34-55 (253)
289 PRK10584 putative ABC transpor 92.8 0.091 2E-06 51.7 3.3 22 2-23 38-59 (228)
290 KOG1954 Endocytosis/signaling 92.7 0.25 5.3E-06 52.6 6.4 45 2-47 60-104 (532)
291 TIGR02770 nickel_nikD nickel i 92.7 0.09 1.9E-06 52.0 3.2 23 2-24 14-36 (230)
292 TIGR02322 phosphon_PhnN phosph 92.7 0.13 2.8E-06 48.6 4.2 22 2-23 3-24 (179)
293 cd03297 ABC_ModC_molybdenum_tr 92.7 0.093 2E-06 51.2 3.2 22 2-23 25-46 (214)
294 PF00485 PRK: Phosphoribulokin 92.7 0.082 1.8E-06 51.0 2.8 22 2-23 1-22 (194)
295 COG3842 PotA ABC-type spermidi 92.7 0.15 3.1E-06 54.4 4.8 69 2-85 33-103 (352)
296 PF00025 Arf: ADP-ribosylation 92.7 0.24 5.2E-06 46.9 5.9 52 3-69 17-69 (175)
297 PRK14239 phosphate transporter 92.7 0.092 2E-06 52.5 3.2 22 2-23 33-54 (252)
298 cd01871 Rac1_like Rac1-like su 92.7 0.24 5.2E-06 46.7 5.9 58 3-70 4-61 (174)
299 PRK05480 uridine/cytidine kina 92.7 0.085 1.9E-06 51.3 2.9 23 1-23 7-29 (209)
300 PRK13540 cytochrome c biogenes 92.7 0.097 2.1E-06 50.6 3.3 22 2-23 29-50 (200)
301 PRK10416 signal recognition pa 92.7 0.13 2.8E-06 54.1 4.4 30 2-31 116-145 (318)
302 PRK14262 phosphate ABC transpo 92.6 0.094 2E-06 52.4 3.2 22 2-23 31-52 (250)
303 cd03229 ABC_Class3 This class 92.6 0.1 2.2E-06 49.6 3.3 23 2-24 28-50 (178)
304 PRK14269 phosphate ABC transpo 92.6 0.095 2.1E-06 52.4 3.2 22 2-23 30-51 (246)
305 cd03301 ABC_MalK_N The N-termi 92.6 0.098 2.1E-06 50.8 3.3 22 2-23 28-49 (213)
306 cd03230 ABC_DR_subfamily_A Thi 92.6 0.1 2.2E-06 49.4 3.3 22 2-23 28-49 (173)
307 PRK13541 cytochrome c biogenes 92.6 0.099 2.1E-06 50.4 3.2 23 2-24 28-50 (195)
308 TIGR03864 PQQ_ABC_ATP ABC tran 92.6 0.098 2.1E-06 51.9 3.3 22 2-23 29-50 (236)
309 cd04103 Centaurin_gamma Centau 92.6 0.22 4.7E-06 46.4 5.4 57 2-69 2-58 (158)
310 cd03296 ABC_CysA_sulfate_impor 92.6 0.099 2.1E-06 52.0 3.2 22 2-23 30-51 (239)
311 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.6 0.095 2.1E-06 51.9 3.1 22 2-23 31-52 (238)
312 PRK15177 Vi polysaccharide exp 92.5 0.1 2.2E-06 51.3 3.2 22 2-23 15-36 (213)
313 TIGR00485 EF-Tu translation el 92.5 0.31 6.8E-06 52.5 7.3 103 2-111 14-123 (394)
314 PF03205 MobB: Molybdopterin g 92.5 0.055 1.2E-06 50.0 1.3 30 1-30 1-30 (140)
315 PRK14247 phosphate ABC transpo 92.5 0.099 2.1E-06 52.3 3.2 22 2-23 31-52 (250)
316 cd03245 ABCC_bacteriocin_expor 92.5 0.1 2.2E-06 51.0 3.2 22 2-23 32-53 (220)
317 PRK14738 gmk guanylate kinase; 92.5 0.14 3.1E-06 50.1 4.2 23 1-23 14-36 (206)
318 cd03266 ABC_NatA_sodium_export 92.5 0.1 2.2E-06 50.9 3.2 22 2-23 33-54 (218)
319 smart00053 DYNc Dynamin, GTPas 92.5 0.11 2.3E-06 52.5 3.4 22 2-23 28-49 (240)
320 COG0396 sufC Cysteine desulfur 92.5 0.14 3E-06 51.4 4.0 23 2-24 32-54 (251)
321 cd03295 ABC_OpuCA_Osmoprotecti 92.4 0.1 2.3E-06 51.9 3.3 22 2-23 29-50 (242)
322 PRK10247 putative ABC transpor 92.4 0.11 2.3E-06 51.4 3.3 22 2-23 35-56 (225)
323 cd03253 ABCC_ATM1_transporter 92.4 0.11 2.3E-06 51.5 3.2 22 2-23 29-50 (236)
324 cd03244 ABCC_MRP_domain2 Domai 92.4 0.11 2.3E-06 50.9 3.2 22 2-23 32-53 (221)
325 PRK12727 flagellar biosynthesi 92.4 0.16 3.5E-06 56.7 4.9 22 2-23 352-373 (559)
326 PRK14245 phosphate ABC transpo 92.4 0.1 2.3E-06 52.2 3.2 22 2-23 31-52 (250)
327 cd03236 ABC_RNaseL_inhibitor_d 92.4 0.11 2.3E-06 52.8 3.3 23 2-24 28-50 (255)
328 PRK14250 phosphate ABC transpo 92.4 0.11 2.3E-06 51.9 3.2 22 2-23 31-52 (241)
329 PRK11264 putative amino-acid A 92.4 0.11 2.3E-06 51.9 3.3 22 2-23 31-52 (250)
330 cd03246 ABCC_Protease_Secretio 92.4 0.11 2.4E-06 49.1 3.2 22 2-23 30-51 (173)
331 PRK10744 pstB phosphate transp 92.4 0.11 2.3E-06 52.6 3.2 22 2-23 41-62 (260)
332 PF10662 PduV-EutP: Ethanolami 92.4 0.21 4.4E-06 46.6 4.8 22 2-23 3-24 (143)
333 PRK13539 cytochrome c biogenes 92.4 0.11 2.4E-06 50.5 3.3 22 2-23 30-51 (207)
334 cd03116 MobB Molybdenum is an 92.4 0.087 1.9E-06 49.8 2.4 32 1-32 2-33 (159)
335 PRK08233 hypothetical protein; 92.4 0.11 2.4E-06 48.8 3.1 23 1-23 4-26 (182)
336 COG1121 ZnuC ABC-type Mn/Zn tr 92.4 0.23 4.9E-06 50.6 5.5 22 2-23 32-53 (254)
337 cd03251 ABCC_MsbA MsbA is an e 92.3 0.11 2.4E-06 51.2 3.2 22 2-23 30-51 (234)
338 PRK05433 GTP-binding protein L 92.3 0.53 1.1E-05 53.7 9.0 102 2-108 9-119 (600)
339 TIGR03740 galliderm_ABC gallid 92.3 0.11 2.5E-06 50.9 3.3 22 2-23 28-49 (223)
340 cd03215 ABC_Carb_Monos_II This 92.3 0.12 2.5E-06 49.4 3.2 23 2-24 28-50 (182)
341 PLN03046 D-glycerate 3-kinase; 92.3 0.11 2.4E-06 56.5 3.3 23 1-23 213-235 (460)
342 cd03231 ABC_CcmA_heme_exporter 92.2 0.12 2.6E-06 50.1 3.3 22 2-23 28-49 (201)
343 PRK15056 manganese/iron transp 92.2 0.11 2.4E-06 52.9 3.2 22 2-23 35-56 (272)
344 TIGR00503 prfC peptide chain r 92.2 0.51 1.1E-05 53.0 8.7 92 2-103 13-120 (527)
345 TIGR00972 3a0107s01c2 phosphat 92.2 0.11 2.5E-06 51.8 3.2 23 2-24 29-51 (247)
346 PRK14267 phosphate ABC transpo 92.2 0.11 2.4E-06 52.0 3.2 22 2-23 32-53 (253)
347 PLN03126 Elongation factor Tu; 92.2 0.53 1.2E-05 52.2 8.7 102 2-110 83-191 (478)
348 PRK10908 cell division protein 92.2 0.12 2.6E-06 50.8 3.3 22 2-23 30-51 (222)
349 PRK14248 phosphate ABC transpo 92.2 0.11 2.4E-06 52.6 3.2 22 2-23 49-70 (268)
350 cd03223 ABCD_peroxisomal_ALDP 92.2 0.12 2.7E-06 48.6 3.2 22 2-23 29-50 (166)
351 PRK14261 phosphate ABC transpo 92.1 0.12 2.5E-06 51.9 3.2 22 2-23 34-55 (253)
352 cd03233 ABC_PDR_domain1 The pl 92.1 0.11 2.4E-06 50.4 3.0 22 2-23 35-56 (202)
353 PRK14270 phosphate ABC transpo 92.1 0.12 2.6E-06 51.8 3.2 22 2-23 32-53 (251)
354 PRK14240 phosphate transporter 92.1 0.12 2.6E-06 51.7 3.2 22 2-23 31-52 (250)
355 PRK14273 phosphate ABC transpo 92.1 0.12 2.6E-06 51.8 3.2 22 2-23 35-56 (254)
356 KOG3859 Septins (P-loop GTPase 92.1 0.23 4.9E-06 51.1 5.1 64 3-71 45-108 (406)
357 TIGR03410 urea_trans_UrtE urea 92.1 0.12 2.6E-06 50.9 3.2 23 2-24 28-50 (230)
358 TIGR01184 ntrCD nitrate transp 92.1 0.12 2.7E-06 51.1 3.3 23 2-24 13-35 (230)
359 PRK12317 elongation factor 1-a 92.1 0.35 7.6E-06 52.5 7.0 22 2-23 8-29 (425)
360 PRK05124 cysN sulfate adenylyl 92.1 0.31 6.7E-06 54.0 6.6 22 2-23 29-50 (474)
361 PRK14274 phosphate ABC transpo 92.1 0.12 2.6E-06 52.1 3.1 22 2-23 40-61 (259)
362 PRK10895 lipopolysaccharide AB 92.1 0.12 2.7E-06 51.3 3.3 22 2-23 31-52 (241)
363 cd03294 ABC_Pro_Gly_Bertaine T 92.0 0.12 2.7E-06 52.5 3.2 23 2-24 52-74 (269)
364 PRK11701 phnK phosphonate C-P 92.0 0.12 2.7E-06 51.9 3.2 22 2-23 34-55 (258)
365 PRK10512 selenocysteinyl-tRNA- 92.0 0.67 1.4E-05 53.1 9.4 23 1-23 1-23 (614)
366 cd03298 ABC_ThiQ_thiamine_tran 92.0 0.13 2.8E-06 50.0 3.2 23 2-24 26-48 (211)
367 PRK13538 cytochrome c biogenes 92.0 0.13 2.8E-06 49.9 3.2 23 2-24 29-51 (204)
368 TIGR00484 EF-G translation elo 92.0 0.59 1.3E-05 54.1 9.1 22 2-23 12-33 (689)
369 PRK14235 phosphate transporter 92.0 0.12 2.7E-06 52.4 3.2 22 2-23 47-68 (267)
370 cd02019 NK Nucleoside/nucleoti 92.0 0.13 2.9E-06 41.4 2.7 22 2-23 1-22 (69)
371 PRK09544 znuC high-affinity zi 91.9 0.13 2.8E-06 51.9 3.2 22 2-23 32-53 (251)
372 PRK13651 cobalt transporter AT 91.9 0.12 2.7E-06 53.7 3.2 22 2-23 35-56 (305)
373 PRK10575 iron-hydroxamate tran 91.9 0.12 2.6E-06 52.3 3.1 22 2-23 39-60 (265)
374 PRK14268 phosphate ABC transpo 91.9 0.13 2.8E-06 51.9 3.2 22 2-23 40-61 (258)
375 TIGR02324 CP_lyasePhnL phospho 91.9 0.13 2.9E-06 50.4 3.2 22 2-23 36-57 (224)
376 cd03214 ABC_Iron-Siderophores_ 91.9 0.14 3E-06 48.8 3.3 22 2-23 27-48 (180)
377 cd03237 ABC_RNaseL_inhibitor_d 91.9 0.13 2.8E-06 51.8 3.2 22 2-23 27-48 (246)
378 PRK13649 cbiO cobalt transport 91.9 0.13 2.7E-06 52.6 3.2 22 2-23 35-56 (280)
379 cd03234 ABCG_White The White s 91.9 0.13 2.9E-06 50.6 3.2 22 2-23 35-56 (226)
380 PRK14256 phosphate ABC transpo 91.9 0.13 2.8E-06 51.5 3.2 22 2-23 32-53 (252)
381 cd03232 ABC_PDR_domain2 The pl 91.9 0.14 3E-06 49.4 3.2 22 2-23 35-56 (192)
382 PRK13648 cbiO cobalt transport 91.9 0.13 2.8E-06 52.2 3.2 22 2-23 37-58 (269)
383 cd03217 ABC_FeS_Assembly ABC-t 91.9 0.14 2.9E-06 49.7 3.2 22 2-23 28-49 (200)
384 PRK13645 cbiO cobalt transport 91.9 0.13 2.8E-06 52.8 3.2 23 2-24 39-61 (289)
385 PRK11231 fecE iron-dicitrate t 91.8 0.13 2.9E-06 51.6 3.2 22 2-23 30-51 (255)
386 PRK11247 ssuB aliphatic sulfon 91.8 0.13 2.9E-06 52.1 3.2 23 2-24 40-62 (257)
387 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 91.8 0.28 6.1E-06 49.2 5.5 57 3-69 16-72 (232)
388 cd04143 Rhes_like Rhes_like su 91.8 0.26 5.7E-06 49.7 5.3 58 3-70 3-60 (247)
389 PRK13351 elongation factor G; 91.8 0.54 1.2E-05 54.4 8.5 22 2-23 10-31 (687)
390 TIGR01394 TypA_BipA GTP-bindin 91.8 0.49 1.1E-05 53.9 8.0 65 2-70 3-76 (594)
391 PRK15112 antimicrobial peptide 91.8 0.13 2.9E-06 52.1 3.2 23 2-24 41-63 (267)
392 PRK11300 livG leucine/isoleuci 91.8 0.13 2.9E-06 51.4 3.2 22 2-23 33-54 (255)
393 PRK13638 cbiO cobalt transport 91.8 0.13 2.8E-06 52.3 3.1 22 2-23 29-50 (271)
394 PRK13548 hmuV hemin importer A 91.8 0.14 3E-06 51.8 3.2 22 2-23 30-51 (258)
395 PRK14251 phosphate ABC transpo 91.8 0.14 3E-06 51.3 3.2 22 2-23 32-53 (251)
396 COG0194 Gmk Guanylate kinase [ 91.8 0.2 4.4E-06 48.6 4.2 35 1-36 5-39 (191)
397 PRK14272 phosphate ABC transpo 91.8 0.14 3E-06 51.2 3.2 22 2-23 32-53 (252)
398 PRK14255 phosphate ABC transpo 91.8 0.14 3E-06 51.3 3.2 22 2-23 33-54 (252)
399 PRK13543 cytochrome c biogenes 91.7 0.14 3E-06 50.1 3.2 22 2-23 39-60 (214)
400 cd04126 Rab20 Rab20 subfamily. 91.7 0.33 7.2E-06 48.2 5.8 55 2-70 2-56 (220)
401 PRK13632 cbiO cobalt transport 91.7 0.14 3E-06 52.2 3.2 23 2-24 37-59 (271)
402 TIGR01277 thiQ thiamine ABC tr 91.7 0.14 3.1E-06 49.9 3.2 23 2-24 26-48 (213)
403 cd03247 ABCC_cytochrome_bd The 91.7 0.15 3.2E-06 48.4 3.2 22 2-23 30-51 (178)
404 PRK14259 phosphate ABC transpo 91.7 0.14 3E-06 52.1 3.2 22 2-23 41-62 (269)
405 TIGR02769 nickel_nikE nickel i 91.7 0.14 3.1E-06 51.8 3.2 22 2-23 39-60 (265)
406 PRK11614 livF leucine/isoleuci 91.7 0.14 3E-06 50.8 3.1 22 2-23 33-54 (237)
407 PRK14253 phosphate ABC transpo 91.7 0.14 3E-06 51.2 3.2 22 2-23 31-52 (249)
408 PRK05306 infB translation init 91.7 0.9 1.9E-05 53.4 10.1 92 1-108 291-382 (787)
409 CHL00131 ycf16 sulfate ABC tra 91.7 0.14 3E-06 51.3 3.0 22 2-23 35-56 (252)
410 PRK10771 thiQ thiamine transpo 91.6 0.14 3.1E-06 50.5 3.2 22 2-23 27-48 (232)
411 COG1127 Ttg2A ABC-type transpo 91.6 0.23 5.1E-06 50.1 4.6 37 2-49 36-72 (263)
412 cd01875 RhoG RhoG subfamily. 91.6 0.36 7.9E-06 46.2 5.9 58 3-70 6-63 (191)
413 PRK14249 phosphate ABC transpo 91.6 0.15 3.2E-06 51.1 3.3 23 2-24 32-54 (251)
414 cd03252 ABCC_Hemolysin The ABC 91.6 0.15 3.2E-06 50.5 3.2 22 2-23 30-51 (237)
415 PRK09580 sufC cysteine desulfu 91.6 0.14 3E-06 51.0 3.0 22 2-23 29-50 (248)
416 PRK09493 glnQ glutamine ABC tr 91.6 0.15 3.2E-06 50.7 3.2 22 2-23 29-50 (240)
417 PRK14237 phosphate transporter 91.6 0.15 3.1E-06 51.9 3.2 22 2-23 48-69 (267)
418 PRK13644 cbiO cobalt transport 91.6 0.15 3.2E-06 52.1 3.2 22 2-23 30-51 (274)
419 TIGR00487 IF-2 translation ini 91.6 0.36 7.9E-06 54.9 6.7 23 1-23 88-110 (587)
420 TIGR03005 ectoine_ehuA ectoine 91.6 0.15 3.2E-06 51.1 3.2 22 2-23 28-49 (252)
421 PRK11831 putative ABC transpor 91.6 0.15 3.2E-06 51.9 3.2 22 2-23 35-56 (269)
422 TIGR02323 CP_lyasePhnK phospho 91.6 0.15 3.3E-06 51.1 3.2 22 2-23 31-52 (253)
423 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 91.5 0.3 6.5E-06 48.6 5.3 57 3-69 4-60 (222)
424 PRK03695 vitamin B12-transport 91.5 0.17 3.7E-06 50.8 3.6 22 2-23 24-45 (248)
425 PRK13646 cbiO cobalt transport 91.5 0.15 3.2E-06 52.4 3.2 22 2-23 35-56 (286)
426 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 91.5 0.15 3.3E-06 50.3 3.2 22 2-23 50-71 (224)
427 PRK09984 phosphonate/organopho 91.5 0.15 3.3E-06 51.4 3.2 22 2-23 32-53 (262)
428 PRK13641 cbiO cobalt transport 91.5 0.15 3.3E-06 52.4 3.2 23 2-24 35-57 (287)
429 COG0410 LivF ABC-type branched 91.5 0.24 5.3E-06 49.6 4.5 23 2-24 31-53 (237)
430 TIGR02034 CysN sulfate adenyly 91.5 0.5 1.1E-05 51.2 7.3 22 2-23 2-23 (406)
431 cd03228 ABCC_MRP_Like The MRP 91.5 0.17 3.6E-06 47.8 3.3 22 2-23 30-51 (171)
432 COG3839 MalK ABC-type sugar tr 91.4 0.29 6.4E-06 51.8 5.3 23 2-24 31-53 (338)
433 cd04165 GTPBP1_like GTPBP1-lik 91.4 0.49 1.1E-05 47.1 6.7 20 3-22 2-21 (224)
434 PRK14238 phosphate transporter 91.4 0.16 3.4E-06 51.8 3.2 22 2-23 52-73 (271)
435 TIGR01188 drrA daunorubicin re 91.4 0.16 3.4E-06 52.7 3.3 22 2-23 21-42 (302)
436 cd01131 PilT Pilus retraction 91.4 0.16 3.5E-06 49.4 3.1 22 2-23 3-24 (198)
437 TIGR03771 anch_rpt_ABC anchore 91.4 0.16 3.5E-06 50.1 3.2 22 2-23 8-29 (223)
438 cd03290 ABCC_SUR1_N The SUR do 91.4 0.17 3.6E-06 49.6 3.2 22 2-23 29-50 (218)
439 PRK14244 phosphate ABC transpo 91.4 0.16 3.5E-06 50.8 3.2 22 2-23 33-54 (251)
440 PRK13643 cbiO cobalt transport 91.4 0.15 3.3E-06 52.4 3.1 22 2-23 34-55 (288)
441 cd03248 ABCC_TAP TAP, the Tran 91.3 0.16 3.6E-06 49.8 3.2 22 2-23 42-63 (226)
442 COG4559 ABC-type hemin transpo 91.3 0.16 3.5E-06 50.5 3.1 22 2-23 29-50 (259)
443 PRK13547 hmuV hemin importer A 91.3 0.16 3.5E-06 52.0 3.2 22 2-23 29-50 (272)
444 PRK14266 phosphate ABC transpo 91.3 0.16 3.6E-06 50.7 3.2 22 2-23 31-52 (250)
445 COG4598 HisP ABC-type histidin 91.3 0.3 6.5E-06 47.6 4.7 38 2-50 34-71 (256)
446 cd03267 ABC_NatA_like Similar 91.3 0.17 3.6E-06 50.4 3.2 22 2-23 49-70 (236)
447 PLN00223 ADP-ribosylation fact 91.3 0.43 9.3E-06 45.4 5.9 52 3-68 20-71 (181)
448 cd03250 ABCC_MRP_domain1 Domai 91.3 0.17 3.7E-06 48.9 3.2 22 2-23 33-54 (204)
449 PRK13635 cbiO cobalt transport 91.3 0.16 3.5E-06 52.0 3.2 22 2-23 35-56 (279)
450 PRK10253 iron-enterobactin tra 91.3 0.16 3.4E-06 51.5 3.1 22 2-23 35-56 (265)
451 cd03300 ABC_PotA_N PotA is an 91.2 0.17 3.8E-06 50.0 3.3 22 2-23 28-49 (232)
452 TIGR03411 urea_trans_UrtD urea 91.2 0.17 3.7E-06 50.2 3.2 22 2-23 30-51 (242)
453 PRK13652 cbiO cobalt transport 91.2 0.17 3.7E-06 51.7 3.2 22 2-23 32-53 (277)
454 PRK14265 phosphate ABC transpo 91.2 0.17 3.7E-06 51.6 3.2 22 2-23 48-69 (274)
455 PRK00007 elongation factor G; 91.1 0.46 1E-05 55.1 7.1 22 2-23 12-33 (693)
456 PRK05506 bifunctional sulfate 91.1 0.52 1.1E-05 54.0 7.4 21 3-23 27-47 (632)
457 TIGR01288 nodI ATP-binding ABC 91.1 0.17 3.8E-06 52.3 3.3 22 2-23 32-53 (303)
458 PRK13640 cbiO cobalt transport 91.1 0.17 3.7E-06 51.8 3.2 22 2-23 35-56 (282)
459 PF13521 AAA_28: AAA domain; P 91.1 0.13 2.8E-06 48.0 2.1 21 3-23 2-22 (163)
460 TIGR00554 panK_bact pantothena 91.1 0.16 3.5E-06 52.7 3.0 23 1-23 63-85 (290)
461 PLN02796 D-glycerate 3-kinase 91.1 0.18 4E-06 53.5 3.4 22 2-23 102-123 (347)
462 PRK00741 prfC peptide chain re 91.1 0.83 1.8E-05 51.3 8.7 90 2-100 12-116 (526)
463 PRK10619 histidine/lysine/argi 91.0 0.18 3.9E-06 50.7 3.2 23 2-24 33-55 (257)
464 TIGR02982 heterocyst_DevA ABC 91.0 0.19 4.1E-06 49.3 3.3 22 2-23 33-54 (220)
465 PRK14243 phosphate transporter 91.0 0.18 4E-06 51.0 3.2 22 2-23 38-59 (264)
466 PTZ00301 uridine kinase; Provi 91.0 0.18 3.9E-06 49.9 3.0 22 1-22 4-25 (210)
467 PRK10078 ribose 1,5-bisphospho 90.9 0.2 4.3E-06 48.0 3.2 22 2-23 4-25 (186)
468 TIGR00490 aEF-2 translation el 90.9 0.64 1.4E-05 54.1 8.0 98 2-104 21-127 (720)
469 PF13238 AAA_18: AAA domain; P 90.9 0.17 3.6E-06 44.3 2.6 21 3-23 1-21 (129)
470 PRK10418 nikD nickel transport 90.9 0.19 4.1E-06 50.5 3.2 23 2-24 31-53 (254)
471 PRK14275 phosphate ABC transpo 90.9 0.18 4E-06 51.8 3.2 22 2-23 67-88 (286)
472 PRK13650 cbiO cobalt transport 90.9 0.19 4.1E-06 51.5 3.2 22 2-23 35-56 (279)
473 PRK13546 teichoic acids export 90.9 0.19 4.1E-06 51.3 3.2 22 2-23 52-73 (264)
474 PRK14271 phosphate ABC transpo 90.9 0.19 4.1E-06 51.4 3.3 22 2-23 49-70 (276)
475 PRK14252 phosphate ABC transpo 90.9 0.19 4.2E-06 50.8 3.2 22 2-23 44-65 (265)
476 smart00382 AAA ATPases associa 90.9 0.22 4.7E-06 42.9 3.2 23 2-24 4-26 (148)
477 PRK13631 cbiO cobalt transport 90.9 0.19 4.1E-06 52.7 3.3 22 2-23 54-75 (320)
478 TIGR00437 feoB ferrous iron tr 90.8 0.28 6.1E-06 55.8 4.9 50 7-71 1-54 (591)
479 cd03213 ABCG_EPDR ABCG transpo 90.8 0.2 4.3E-06 48.4 3.2 22 2-23 37-58 (194)
480 TIGR03873 F420-0_ABC_ATP propo 90.8 0.19 4.2E-06 50.5 3.1 22 2-23 29-50 (256)
481 PRK11153 metN DL-methionine tr 90.8 0.19 4.1E-06 53.2 3.2 23 2-24 33-55 (343)
482 PRK13647 cbiO cobalt transport 90.7 0.19 4.2E-06 51.2 3.2 22 2-23 33-54 (274)
483 TIGR02173 cyt_kin_arch cytidyl 90.7 0.23 5E-06 46.0 3.4 23 1-23 1-23 (171)
484 PRK14260 phosphate ABC transpo 90.7 0.2 4.3E-06 50.5 3.2 22 2-23 35-56 (259)
485 COG1101 PhnK ABC-type uncharac 90.7 0.19 4.2E-06 50.1 2.9 23 2-24 34-56 (263)
486 PRK14258 phosphate ABC transpo 90.7 0.21 4.4E-06 50.5 3.2 23 2-24 35-57 (261)
487 cd01983 Fer4_NifH The Fer4_Nif 90.7 0.27 5.9E-06 40.2 3.5 46 2-70 1-46 (99)
488 KOG0086 GTPase Rab4, small G p 90.6 0.37 8.1E-06 45.4 4.6 57 3-68 12-68 (214)
489 PRK14246 phosphate ABC transpo 90.6 0.21 4.5E-06 50.6 3.2 23 2-24 38-60 (257)
490 PRK14731 coaE dephospho-CoA ki 90.6 0.24 5.1E-06 48.6 3.5 29 1-33 6-34 (208)
491 PRK14254 phosphate ABC transpo 90.6 0.21 4.5E-06 51.4 3.2 22 2-23 67-88 (285)
492 PRK13637 cbiO cobalt transport 90.6 0.21 4.5E-06 51.4 3.2 23 2-24 35-57 (287)
493 PRK14236 phosphate transporter 90.5 0.21 4.5E-06 50.8 3.2 22 2-23 53-74 (272)
494 cd03291 ABCC_CFTR1 The CFTR su 90.5 0.21 4.6E-06 51.4 3.2 22 2-23 65-86 (282)
495 PRK09270 nucleoside triphospha 90.5 0.21 4.6E-06 49.5 3.1 22 2-23 35-56 (229)
496 cd00820 PEPCK_HprK Phosphoenol 90.5 0.24 5.1E-06 44.0 3.0 20 2-21 17-36 (107)
497 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 90.4 0.55 1.2E-05 45.0 5.7 57 3-69 8-64 (182)
498 cd03115 SRP The signal recogni 90.3 0.86 1.9E-05 42.8 7.0 30 2-31 2-31 (173)
499 cd03288 ABCC_SUR2 The SUR doma 90.3 0.23 4.9E-06 50.1 3.2 22 2-23 49-70 (257)
500 PRK11000 maltose/maltodextrin 90.3 0.22 4.8E-06 53.3 3.2 23 2-24 31-53 (369)
No 1
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=1.2e-52 Score=423.87 Aligned_cols=223 Identities=38% Similarity=0.633 Sum_probs=187.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcc-hhhh
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN-VYDD 79 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~-~~D~ 79 (542)
.||||+|++|||||||||+|+|. ..||+||+++++||+|||||++|.+ .+++++|++|||||++|+++++ .+|+
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~--~~gF~~~~~~~~~T~Giw~w~~~~~---~~~~~~v~llDteG~~~~~~~~~~~d~ 96 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGP--QSGFSWGPTVEPCTKGIWMWSEPLP---DGEKVAVVLLDTEGLGDVEQSDEKYDA 96 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCB--SSSSESSSCSSST-SCEEEECCE-T---TSTCEEEEEEEEECBTTTTCCCCHHCH
T ss_pred EEEEeecCCccchHHHHHHHhcc--cccccccCCCCCCCcceeeeecccc---cccceeEEEecchhccccccCcccccH
Confidence 48999999999999999999986 5899999999999999999999944 3688999999999999976665 5789
Q ss_pred HHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhcccc-----CCCCCCCCcceEEEEeecccc-----c--cc
Q 009154 80 RIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVK-----GQDVAFEPAKLVWLIQRDFLQ-----G--KS 147 (542)
Q Consensus 80 ~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~-----~~~~~~~P~~flw~vvRDf~~-----g--~t 147 (542)
+||+|++||||++|||+++.|+++++++|+++++++++|..+.. .+...++| .|+|++ |||.. | .|
T Consensus 97 ~if~Ls~LLSS~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~~~~~~~~~~~fp-~l~wlv-RDf~~~~~~~~~~~t 174 (260)
T PF02263_consen 97 KIFALSMLLSSVLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGDSADSEDLGKPFP-SLVWLV-RDFSLELEDDGGKIT 174 (260)
T ss_dssp HHHHHHHHH-SEEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHHHHHHHCTTTTCE-EEEEEE-ECE-SCTCCTTECHH
T ss_pred HHHHHHHHHhCceeeCCCCccchhHHHHHHHHHHHHHHHHHhcccccchhhhcccch-HHHHHH-hhccchhhhccCCCC
Confidence 99999999999999999999999999999999999999865421 12345678 499997 99973 2 37
Q ss_pred hHHHHHHHhhcCCCCCCCcchhhhhhHHHHHhccCCCcceeccCCccccccc---cCCCCCCCCChHHHHHHHHHHHHhh
Q 009154 148 VQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTK---LCDMKDEELDPIYVKRREQLKKLVA 224 (542)
Q Consensus 148 ~~eyLe~~L~~~~~~~~~~~~~e~N~iR~~I~~~F~~~~cF~Lp~P~~~~~~---L~~l~~~~L~p~F~e~~~~L~~~i~ 224 (542)
+++||+++|+...+. ++.++++|++|++|++||++++||+||||+.+++. +++++.++|+|+|++++++|+++|+
T Consensus 175 ~~eyLe~~L~~~~~~--~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~L~~eF~~~l~~l~~~i~ 252 (260)
T PF02263_consen 175 PQEYLEQALKPESGQ--DEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDDLDPEFVEQLDELVKYIF 252 (260)
T ss_dssp HHHHHHHHCCSSTSS--SCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGGS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccch--hHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhhCCHHHHHHHHHHHHHHh
Confidence 999999999876553 46678899999999999999999999999999866 4556779999999999999999999
Q ss_pred hccCCccc
Q 009154 225 SVTRPKIV 232 (542)
Q Consensus 225 ~~~~pK~l 232 (542)
+..++|++
T Consensus 253 ~~~~~k~~ 260 (260)
T PF02263_consen 253 SSAKVKTL 260 (260)
T ss_dssp CCT---BE
T ss_pred ccCCcccC
Confidence 98888763
No 2
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=100.00 E-value=7e-40 Score=324.10 Aligned_cols=211 Identities=34% Similarity=0.477 Sum_probs=173.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcc-hhhh
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN-VYDD 79 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~-~~D~ 79 (542)
.||||+|++|||||||||+|+|. .++|+++++.++||+|||||..|+.. +++..|+++||||+++.++++ .+|.
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~--~~~f~~~~~~~~~T~gi~~~~~~~~~---~~~~~v~~lDteG~~~~~~~~~~~~~ 82 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGT--LSGFDVMDTSQQTTKGIWMWSVPFKL---GKEHAVLLLDTEGTDGRERGEFEDDA 82 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC--CCCeEecCCCCCCccceEEEeccccC---CCcceEEEEecCCcCccccCchhhhh
Confidence 48999999999999999999996 36899999999999999999999875 467899999999999999998 8999
Q ss_pred HHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccc-cCCCCCCCCcceEEEEeeccccccchHHHHHHHhhc
Q 009154 80 RIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRV-KGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDALQR 158 (542)
Q Consensus 80 ~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~-~~~~~~~~P~~flw~vvRDf~~g~t~~eyLe~~L~~ 158 (542)
+||||+++|||++|||+++++++++++.|+.+++.+...-... ......++| .|+|++ |||.... +.++.+..
T Consensus 83 ~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p-~ll~vv-RD~~~~~-~~~~~~~~--- 156 (224)
T cd01851 83 RLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKP-LLLFVV-RDFSLDT-PLENLDIT--- 156 (224)
T ss_pred HHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCC-ceEEEE-ecCcCCc-cccccccc---
Confidence 9999999999999999999999999999999999762211111 112235667 489986 9998432 11111111
Q ss_pred CCCCCCCcchhhhhhHHHHHhccC--CCcceeccCCccccccccC-CCCCCCCChHHHHHHHHHHHHhhh
Q 009154 159 VPNDKGDKNIDMVNQIRNSLAIMG--DNSTAFSLPQPHLLRTKLC-DMKDEELDPIYVKRREQLKKLVAS 225 (542)
Q Consensus 159 ~~~~~~~~~~~e~N~iR~~I~~~F--~~~~cF~Lp~P~~~~~~L~-~l~~~~L~p~F~e~~~~L~~~i~~ 225 (542)
.+ ..+..++.|++|++|+++| ++++||++|+|+.+.+.++ +++.++++|+|.++++.|++++.+
T Consensus 157 -~~--~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 157 -EG--RETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred -cc--cchhHHHHHHHHHHHHhhccCCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhcC
Confidence 11 2356778999999999999 9999999999999887654 667789999999999999998864
No 3
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=2.2e-31 Score=302.52 Aligned_cols=351 Identities=19% Similarity=0.296 Sum_probs=257.2
Q ss_pred ECCCCCCHHHHHHHHHcCCCCCCeeeee--cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcch----hhh
Q 009154 6 IGPYRSGKSFLLNQLLSLSCDEGFGVGH--MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNV----YDD 79 (542)
Q Consensus 6 ~G~~rtGKSfLLN~Llg~~~~~gF~vg~--~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~----~D~ 79 (542)
+|+|+||||||||+|||++ |.|+. ++++||+||||-..+... .....+++||+||+++.+++++ +.+
T Consensus 1 ~g~qssgkstlln~lf~t~----f~~m~~~~r~qtt~gi~~~~~~~~~---~~~~~~~v~d~eg~d~~er~~~~~fe~~~ 73 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQ----FDVMDESGRQQTTKGIWMAKAKEVE---SSESNILVLDVEGTDGRERGEDQDFERKS 73 (742)
T ss_pred CCCCCCcHHHHHHHHHCCC----ccccccccccccchhhHHHhccccc---cCCCceEEEeCCCCCchhhccccchHHHH
Confidence 5999999999999999985 99976 577899999997654321 2345789999999999998865 458
Q ss_pred HHHHHHHhhhccEEEcCCC----CcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeeccccccchHHHHHHH
Q 009154 80 RIFALATVMSSVLIYNLPE----TIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQEMVHDA 155 (542)
Q Consensus 80 ~IFaLa~LLSS~lIYN~~g----~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~~g~t~~eyLe~~ 155 (542)
.+||||+ |.++|.|++. ..+.+++..|+.|.|+.-.++++.+. .. +...|.||||||+ |.||.+.|++.
T Consensus 74 alf~la~--s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~--~~--~k~~llfviRD~~-~~tp~e~l~~~ 146 (742)
T PF05879_consen 74 ALFALAV--SDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKS--ND--RKTLLLFVIRDHT-GVTPLENLEET 146 (742)
T ss_pred HHHHHHh--hhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhccc--CC--CCceEEEEEeeCC-CCCcHHHHHHH
Confidence 8999998 9999999974 57888999999999999999876431 11 2236677779999 56888888887
Q ss_pred hhcCCCCCCCcchhhhhhHHHHHhccCC----------CcceeccCCccccccccCCCCCCCCChHHHHHHHHHHHHhhh
Q 009154 156 LQRVPNDKGDKNIDMVNQIRNSLAIMGD----------NSTAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLKKLVAS 225 (542)
Q Consensus 156 L~~~~~~~~~~~~~e~N~iR~~I~~~F~----------~~~cF~Lp~P~~~~~~L~~l~~~~L~p~F~e~~~~L~~~i~~ 225 (542)
|. ++.++||+.|.++-. +...++|||...+. .+|.+++.+|++.+..
T Consensus 147 l~-----------~dl~~iW~~i~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~------------e~F~~~v~~Lr~rf~~ 203 (742)
T PF05879_consen 147 LR-----------EDLEKIWDSISKPEGFENSSLSDFFDLEFTALPHKILQP------------EKFNEDVAKLRQRFVD 203 (742)
T ss_pred HH-----------HHHHHHHHhccCcccccCCChhheeeeeeeccCchhhhH------------HHHHHHHHHHHHHHhc
Confidence 75 356677776654421 23445777776542 4799999999998876
Q ss_pred c-------cCCcccCCeecchhHHHHHHHHHHHHHhcC---CCCChhhHHH-HHHHHHHHHHHHHHHHHHhhcc------
Q 009154 226 V-------TRPKIVQGKFLNGNEFVAFMEQILEALNKG---EIPSTGSLVE-VFNKGILERCLKLYNERMAKVR------ 288 (542)
Q Consensus 226 ~-------~~pK~l~G~~ltG~~L~~lv~~yveaIn~g---~vP~~~sl~e-~~n~~ave~A~~~Y~~~M~~~~------ 288 (542)
. ++|.+.++.|++| |..|++++|++|.++ ++|+++.|+. ..|.++.++|++.+...+....
T Consensus 204 ~~~~~~~~~~~~y~~~iP~dG--~~~y~~~iW~~I~~nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l 281 (742)
T PF05879_consen 204 SKNIEDGLFKPEYHRRIPADG--FSMYAENIWEQIKNNKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSEL 281 (742)
T ss_pred cCcCCCCCCchhhcCCCChHH--hHHHHHHHHHHHHhCccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 4 5677778888888 888999999999987 7999998775 4599999999999888865421
Q ss_pred ----CCCCHhHHHHHHHHHHHHHHHHHHHhccCch--hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009154 289 ----LPLPEQSLQDAHERSKKEAMDVFDVQHFGRQ--HAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESLYTRCEDKM 362 (542)
Q Consensus 289 ----lP~~~eeL~~~H~~~~~eAl~~F~~~sfgd~--~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~l~~~~e~kL 362 (542)
-....++|........++|++.|+..+...+ ...+.+++|.+.|...+....... -...+..++..+.+.+
T Consensus 282 ~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~~~i~~~l~~lf~~q---L~~L~~~~l~~Fk~~l 358 (742)
T PF05879_consen 282 EEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELESKIDSELQPLFQKQ---LKHLRKKLLESFKEAL 358 (742)
T ss_pred hhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 2345689999999999999999999865443 245667789998888887777643 4455566665555555
Q ss_pred HH-hHhhcchhHHHHhhhhhcccccccccc----cCCcchhH
Q 009154 363 DQ-LQVLRLPSMAKFNAGFLQCNQSFAHEC----VGPSKANY 399 (542)
Q Consensus 363 ~~-l~~~~~~~~~~~~~g~~~~~~~f~~~~----~GP~~~~~ 399 (542)
.. +. ....-.+.+......|...|++.| +....|.+
T Consensus 359 ~~~lk-~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws~ 399 (742)
T PF05879_consen 359 SSALK-SGEDFAEAVRECKQSALEEFEESAEDLVIEGADWSY 399 (742)
T ss_pred HHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcch
Confidence 42 22 111112222333333445666665 34455665
No 4
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=100.00 E-value=7.3e-33 Score=300.35 Aligned_cols=341 Identities=23% Similarity=0.304 Sum_probs=271.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhH
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR 80 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~ 80 (542)
+||+|+|.+|+||||+||.++|. +.||++++++.|||+|||||+.|++. +..++++|+||||++ -++..|.|
T Consensus 33 ~Vv~i~g~~~~gksfiln~la~~--~~gf~~~s~~~~~~~~~w~w~~p~~k---~~~~~l~Lld~eg~~---~~~~~~~w 104 (552)
T KOG2037|consen 33 AVVAIVGLYRTGKSFILNQLAGK--RIGFSVASTDKPVTKGIWMWCVPHGK---SFLLNLVLLDTEGLK---GDNENDDW 104 (552)
T ss_pred eEEEEEEEEcCCCceehhhhHhh--hcCCCcccccccceeeEEEEEeecCC---ccchhhhhhcccccc---CCccchhh
Confidence 58999999999999999999996 58999999999999999999999984 588999999999993 34567899
Q ss_pred HHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccccC-------C----CCCCCCcceEEEEeecccc-----
Q 009154 81 IFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKG-------Q----DVAFEPAKLVWLIQRDFLQ----- 144 (542)
Q Consensus 81 IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~~-------~----~~~~~P~~flw~vvRDf~~----- 144 (542)
||+++.|+|+..+||+.|+++..++.++++++++++.+...+.. + ...++|. |.|+. |||+.
T Consensus 105 ~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~-fa~tt-~~~slqi~~~ 182 (552)
T KOG2037|consen 105 IFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPD-FALTT-MDSSLQIYND 182 (552)
T ss_pred hhccchhhcceeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcch-hhcee-eeeehhhhcc
Confidence 99999999999999999999999999999999999877665531 1 1346785 99998 99972
Q ss_pred --ccchHHHHHHHhhcCCCC-------------------------------------------CCCcchhhhhhHHHHHh
Q 009154 145 --GKSVQEMVHDALQRVPND-------------------------------------------KGDKNIDMVNQIRNSLA 179 (542)
Q Consensus 145 --g~t~~eyLe~~L~~~~~~-------------------------------------------~~~~~~~e~N~iR~~I~ 179 (542)
..++++|++..|....|. ...+..+++...|++++
T Consensus 183 ~q~i~ed~l~~l~l~~~~g~~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~~~l~v~~~~~~el~~~r~~~~ 262 (552)
T KOG2037|consen 183 SQNIQEDDLQHLSLFTEYGRLALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLDNRLKVNGPQLEELVQLRVHAR 262 (552)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccccceeecccchHHHHHHHHHHH
Confidence 235666554332211000 11355677888999999
Q ss_pred ccCCCcceeccCCccccccccC--CCCCCCCChHHHHHHHHHHHHhh-----hccCCcccCCeecchhHHHHHHHHHHHH
Q 009154 180 IMGDNSTAFSLPQPHLLRTKLC--DMKDEELDPIYVKRREQLKKLVA-----SVTRPKIVQGKFLNGNEFVAFMEQILEA 252 (542)
Q Consensus 180 ~~F~~~~cF~Lp~P~~~~~~L~--~l~~~~L~p~F~e~~~~L~~~i~-----~~~~pK~l~G~~ltG~~L~~lv~~yvea 252 (542)
.+|.+..||.+|||+....... +....++.+.|.. +++..++ +.+.+|...|..+|+..+.+++++|...
T Consensus 263 ~~~~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~---ql~~~~p~~~~q~~l~~~~~~~~~~t~~~~~e~fk~y~~i 339 (552)
T KOG2037|consen 263 SCFEDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMG---QLKVELPNLLLQELLDEKEISGREVTCREMKEYFKAYDKI 339 (552)
T ss_pred hhccCcchhhcCchhhhcccCchhhhhHHHHHHHHHH---HHhhhhhHHhhhhhccccccCccchhHHHHHHHHHHHHHH
Confidence 9999999999999998764332 2222344455544 4433333 3455677888999999999999999999
Q ss_pred Hh---cCCCCChhhHH----HHHHHHHHHHHHHHHHHHHhhcc-C-C-CCHhHHHHHHHHHHHHHHHHHHHh-c-cCc-h
Q 009154 253 LN---KGEIPSTGSLV----EVFNKGILERCLKLYNERMAKVR-L-P-LPEQSLQDAHERSKKEAMDVFDVQ-H-FGR-Q 319 (542)
Q Consensus 253 In---~g~vP~~~sl~----e~~n~~ave~A~~~Y~~~M~~~~-l-P-~~~eeL~~~H~~~~~eAl~~F~~~-s-fgd-~ 319 (542)
+. ..++|.+.++. ++.+.+++..|...|...|++++ . | +.+..|...|...++.|+.+|+.. . +|- +
T Consensus 340 ~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~a~~~~~e~rK~ig~~e 419 (552)
T KOG2037|consen 340 FQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKELALKYFTEPRKGIGAEE 419 (552)
T ss_pred hhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHHHHHHHhhhhhhhcHHH
Confidence 99 45899998765 44578899999999999999864 3 3 668999999999999999999984 3 554 4
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009154 320 HAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESL 354 (542)
Q Consensus 320 ~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~l 354 (542)
..++|++.|++.+++.++.++..|+.+....|-.+
T Consensus 420 ~~~~~lq~LE~v~~~l~~~~~~~~~s~~~~~~~r~ 454 (552)
T KOG2037|consen 420 VCQRYLQSLESVEEELLQTDQALTESKKLFLAART 454 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHhcc
Confidence 47889999999999999999999998877777664
No 5
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=99.96 E-value=2e-28 Score=259.17 Aligned_cols=236 Identities=26% Similarity=0.385 Sum_probs=184.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D 78 (542)
||||.||++||||+|||.|+|++ |.++. +++++|||||+-.. .|-+..+++||.||.++.|++.+.|
T Consensus 39 VVavmG~QSSGKSTLLN~LFgTn----F~~MDA~~gRqQTTKGIWlar~------~~i~p~i~vmDvEGTDGrERGEDqd 108 (772)
T KOG2203|consen 39 VVAVMGSQSSGKSTLLNHLFGTN----FREMDAFKGRQQTTKGIWLARC------AGIEPCILVMDVEGTDGRERGEDQD 108 (772)
T ss_pred EEEEecCcccchHHHHHHHhccC----hHHHHhhhccccccchhhHHhh------cCCCCceEEEecccCCccccccccc
Confidence 89999999999999999999985 87754 67899999999643 2455679999999999999998754
Q ss_pred ----hHHHHHHHhhhccEEEcCCCC----cchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeeccccccchHH
Q 009154 79 ----DRIFALATVMSSVLIYNLPET----IREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQGKSVQE 150 (542)
Q Consensus 79 ----~~IFaLa~LLSS~lIYN~~g~----I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~~g~t~~e 150 (542)
+.+||+|+ |.++|.|++.+ .+.+++..|+.|.++.-.+++.-+. ...|.||+||++ |.||.+
T Consensus 109 FErksALFaiav--SevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~-------k~~LlFVIRD~~-~~Tple 178 (772)
T KOG2203|consen 109 FERKSALFAIAV--SEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKN-------KTLLLFVIRDKT-GVTPLE 178 (772)
T ss_pred HHHHhHHHHHhh--hheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCC-------ceEEEEEEeccc-CCCchH
Confidence 89999999 99999999875 6888899999999998887754211 136777789999 679999
Q ss_pred HHHHHhhcCCCCCCCcchhhhhhHHHHHhccC--CC--------cceeccCCccccccccCCCCCCCCChHHHHHHHHHH
Q 009154 151 MVHDALQRVPNDKGDKNIDMVNQIRNSLAIMG--DN--------STAFSLPQPHLLRTKLCDMKDEELDPIYVKRREQLK 220 (542)
Q Consensus 151 yLe~~L~~~~~~~~~~~~~e~N~iR~~I~~~F--~~--------~~cF~Lp~P~~~~~~L~~l~~~~L~p~F~e~~~~L~ 220 (542)
-|+..|. ++.|+||.++.++- ++ .....|+|... -...|.++++.|+
T Consensus 179 nLe~~l~-----------~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~------------kedqF~e~V~~Lr 235 (772)
T KOG2203|consen 179 NLEDVLR-----------EDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKEL------------KEDQFKEQVASLR 235 (772)
T ss_pred HhhHHHH-----------HHHHHHHHhcCCcccccCCchhhhhceeeeecchHHH------------HHHHHHHHHHHHH
Confidence 9999886 46788998876652 11 12223333222 2357999999999
Q ss_pred HHhhhc-cCCcccCC-----eecchhHHHHHHHHHHHHHhcC---CCCChhhHHH-HHHHHHHHHHHHHHHH
Q 009154 221 KLVASV-TRPKIVQG-----KFLNGNEFVAFMEQILEALNKG---EIPSTGSLVE-VFNKGILERCLKLYNE 282 (542)
Q Consensus 221 ~~i~~~-~~pK~l~G-----~~ltG~~L~~lv~~yveaIn~g---~vP~~~sl~e-~~n~~ave~A~~~Y~~ 282 (542)
+.+..+ ..|..+.| .|.+| |.-|.+++|+.|.++ ++|+.+-|+. ..|.++..++++.|..
T Consensus 236 qrFv~s~~s~~~f~~d~~~~iPadG--fs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fit 305 (772)
T KOG2203|consen 236 QRFVHSGISPYGFAGDYHGVIPADG--FSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFIT 305 (772)
T ss_pred HHHHhcCCCCCccccccCCcccccc--hhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhh
Confidence 988776 77766554 47777 556999999999987 7899998764 4588888888876543
No 6
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.92 E-value=2.1e-24 Score=222.21 Aligned_cols=157 Identities=25% Similarity=0.424 Sum_probs=124.1
Q ss_pred CCeecchhHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHHHHHHHHHHHHhhc-cCCCC-HhHHHHHHHHHHHH
Q 009154 233 QGKFLNGNEFVAFMEQILEALNKGEIPSTGSLV----EVFNKGILERCLKLYNERMAKV-RLPLP-EQSLQDAHERSKKE 306 (542)
Q Consensus 233 ~G~~ltG~~L~~lv~~yveaIn~g~vP~~~sl~----e~~n~~ave~A~~~Y~~~M~~~-~lP~~-~eeL~~~H~~~~~e 306 (542)
+|.+|||++|++|+++||+|||+|+|||++|+| +++|.+|+++|+++|.+.|++. .+|++ .++|.+.|+.|.++
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999866 5679999999999999999986 89998 89999999999999
Q ss_pred HHHHHHHhccCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHhHhhcchhHHHHhhhhhc
Q 009154 307 AMDVFDVQHFGRQHAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESLYTR----CEDKMDQLQVLRLPSMAKFNAGFLQ 382 (542)
Q Consensus 307 Al~~F~~~sfgd~~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~l~~~----~e~kL~~l~~~~~~~~~~~~~g~~~ 382 (542)
|+++|++++|||. .++|+++|...|+++++.|++.|+.+|...|++++.. ++++++.-..........|.+.+..
T Consensus 81 A~~~F~~~s~~d~-~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~~ 159 (297)
T PF02841_consen 81 ALEVFMKRSFGDE-DQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELDE 159 (297)
T ss_dssp HHHHHHHH----G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 9999999999994 5789999999999999999999999999999999766 4444443222222234555556655
Q ss_pred cccccccc
Q 009154 383 CNQSFAHE 390 (542)
Q Consensus 383 ~~~~f~~~ 390 (542)
+...|.+.
T Consensus 160 ~~~~Y~~~ 167 (297)
T PF02841_consen 160 LEKEYEQE 167 (297)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhhc
Confidence 66677666
No 7
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.20 E-value=2e-12 Score=141.59 Aligned_cols=137 Identities=26% Similarity=0.200 Sum_probs=109.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----------------CCCeeeeecCcCccceEEeeecccccc-cCCCceeEEEe
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC-----------------DEGFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYL 63 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~-----------------~~gF~vg~~~~~~TkGIWmW~~p~~~~-~~g~~~~vlll 63 (542)
+++++|.++.||||++|.+|.... -.||.+..+.++.|.|||||..|+..+ .+|.++++.++
T Consensus 70 ~~~w~w~~p~~k~~~~~l~Lld~eg~~~~~~~~~w~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~ 149 (552)
T KOG2037|consen 70 KGIWMWCVPHGKSFLLNLVLLDTEGLKGDNENDDWIFALAPLLSSTWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLM 149 (552)
T ss_pred eeEEEEEeecCCccchhhhhhccccccCCccchhhhhccchhhcceeeccCCcccchheecccceeeecCCcceeccccc
Confidence 678999999999999999997642 137787778889999999999997654 57889999999
Q ss_pred ecCCcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeeccc
Q 009154 64 DTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL 143 (542)
Q Consensus 64 DTEG~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~ 143 (542)
||+|..+...+.......|+++++.||+.|||....|+++++++|+++++... .......-.|++-+-+++|||+
T Consensus 150 ~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l~l~~~~g~-----~~l~~~~~kp~q~L~~~~~~~s 224 (552)
T KOG2037|consen 150 DTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHLSLFTEYGR-----LALAHLFKKPFQDLKFLVRDQS 224 (552)
T ss_pred cccccccccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHHHHHHHHHH-----HHHHHhccCcHHHHHHHHHHhh
Confidence 99996653333334469999999999999999999999999999999998543 3222333456666666678886
No 8
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.48 E-value=1.6e-06 Score=83.80 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=59.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcch-hhhH
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNV-YDDR 80 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~-~D~~ 80 (542)
-|+++|..++|||+|+|.|+|. +.|..+....++|+..-.....+ .+..+.++||||+++...+.. ....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~---~~~~~~~~~~~~T~~~~~~~~~~------~~~~i~viDTPG~~d~~~~~~~~~~~ 72 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGR---EVFESKLSASSVTKTCQKESAVW------DGRRVNVIDTPGLFDTSVSPEQLSKE 72 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCC---CccccccCCCCcccccceeeEEE------CCeEEEEEECcCCCCccCChHHHHHH
Confidence 4899999999999999999996 46776643344454432221111 246799999999988654322 1122
Q ss_pred HHHHHHhhh----ccEEE-cCCCCcchHhhhhHHHHHH
Q 009154 81 IFALATVMS----SVLIY-NLPETIREADISRLSFAVE 113 (542)
Q Consensus 81 IFaLa~LLS----S~lIY-N~~g~I~e~al~~L~~v~e 113 (542)
+- -+..++ ..+|| .-.+.+++.+.+.++.+.+
T Consensus 73 i~-~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~ 109 (196)
T cd01852 73 IV-RCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQE 109 (196)
T ss_pred HH-HHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHH
Confidence 21 111111 22222 3334477777766665544
No 9
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.46 E-value=2.4e-06 Score=84.02 Aligned_cols=101 Identities=27% Similarity=0.248 Sum_probs=60.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh-hHH
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD-DRI 81 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D-~~I 81 (542)
|-++|+.|+|||++.|.|+|. +.|..+.+..++|+..-.-.. . ..+..|.++||||++|...++..- ..|
T Consensus 3 IlllG~tGsGKSs~~N~ilg~---~~f~~~~~~~~~t~~~~~~~~----~--~~g~~v~VIDTPGl~d~~~~~~~~~~~i 73 (212)
T PF04548_consen 3 ILLLGKTGSGKSSLGNSILGK---EVFKSGSSAKSVTQECQKYSG----E--VDGRQVTVIDTPGLFDSDGSDEEIIREI 73 (212)
T ss_dssp EEEECSTTSSHHHHHHHHHTS---S-SS--TTTSS--SS-EEEEE----E--ETTEEEEEEE--SSEETTEEHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc---cceeeccccCCcccccceeee----e--ecceEEEEEeCCCCCCCcccHHHHHHHH
Confidence 678999999999999999996 468888777777776543322 1 145789999999998866543221 122
Q ss_pred HHHHHhhhcc------EEEcCCCCcchHhhhhHHHHHHH
Q 009154 82 FALATVMSSV------LIYNLPETIREADISRLSFAVEL 114 (542)
Q Consensus 82 FaLa~LLSS~------lIYN~~g~I~e~al~~L~~v~el 114 (542)
.- ++.++.. +|.+.. .+++++...+..+.++
T Consensus 74 ~~-~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 74 KR-CLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEI 110 (212)
T ss_dssp HH-HHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHH
T ss_pred HH-HHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHH
Confidence 21 1222322 444444 7888888888776654
No 10
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.24 E-value=6.8e-06 Score=72.28 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=43.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
|+|+|++++|||+|+|.|++.. ...+++. .++|+.... .++.. .+..+.++||||+.+..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~---~~~~~~~-~~~T~~~~~--~~~~~----~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK---LAKVSNI-PGTTRDPVY--GQFEY----NNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST---SSEESSS-TTSSSSEEE--EEEEE----TTEEEEEEESSSCSSSS
T ss_pred EEEECCCCCCHHHHHHHHhccc---ccccccc-ccceeeeee--eeeee----ceeeEEEEeCCCCcccc
Confidence 7899999999999999999852 3455554 577777732 22211 34566899999998743
No 11
>COG1159 Era GTPase [General function prediction only]
Probab=98.13 E-value=4.3e-06 Score=85.56 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCcc----ceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT----KGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~T----kGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+|+|.+.+|||||||+|+|.. -++-+....+| +||.. .++..++++||||+--.
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~K----isIvS~k~QTTR~~I~GI~t----------~~~~QiIfvDTPGih~p 67 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQK----ISIVSPKPQTTRNRIRGIVT----------TDNAQIIFVDTPGIHKP 67 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCc----eEeecCCcchhhhheeEEEE----------cCCceEEEEeCCCCCCc
Confidence 59999999999999999999974 55444333333 56664 24778999999998653
No 12
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.01 E-value=3.8e-05 Score=77.73 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=43.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|.++|..++|||+|+|.|+|.. .+.+++ ..++|..+-+.... ..+..+.++||||+++..
T Consensus 33 ~IllvG~tGvGKSSliNaLlg~~---~~~v~~-~~~~T~~~~~~~~~------~~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFGER---KAATSA-FQSETLRVREVSGT------VDGFKLNIIDTPGLLESV 93 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC---CcccCC-CCCceEEEEEEEEE------ECCeEEEEEECCCcCcch
Confidence 48899999999999999999963 455543 34566655443211 134678999999998753
No 13
>PRK00089 era GTPase Era; Reviewed
Probab=97.90 E-value=5.8e-05 Score=77.40 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=39.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecC---cCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR---DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~---~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
+|+|+|+.++|||+|+|.|+|.. ...+++.. .....|+.. .++..++++||+|+.+..
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~---~~~vs~~~~tt~~~i~~i~~----------~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQK---ISIVSPKPQTTRHRIRGIVT----------EDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc---eeecCCCCCcccccEEEEEE----------cCCceEEEEECCCCCCch
Confidence 68999999999999999999863 12223221 112234432 134689999999987643
No 14
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.72 E-value=0.00016 Score=65.50 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=39.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
+|+++|+.++|||+|+|.|+|.. +.........|+ ...... ...++..+.++||+|+.+..
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~----~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~liDtpG~~~~~ 65 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQK----ISIVSPKPQTTR-NRIRGI-----YTDDDAQIIFVDTPGIHKPK 65 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----eEeccCCCCcee-ceEEEE-----EEcCCeEEEEEECCCCCcch
Confidence 69999999999999999999863 332222112222 121111 11346789999999987643
No 15
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.70 E-value=0.00012 Score=74.62 Aligned_cols=56 Identities=27% Similarity=0.458 Sum_probs=39.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eee---cCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+|+|+.++|||+|+|+|.|.. +. +++ |+....+|++.. .+..++++||+|+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~----~~~vs~~~~TTr~~i~~i~~~----------~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQK----ISITSPKAQTTRNRISGIHTT----------GASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----EeecCCCCCcccCcEEEEEEc----------CCcEEEEEECcCCCCC
Confidence 58999999999999999999863 43 222 222334566532 2346899999998753
No 16
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.69 E-value=6e-05 Score=70.16 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
.|+++|..+.|||+|+|.|++. ....+++.. .+|++. .|. + . +..+.++||||+
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~---~~~~~~~~~-g~T~~~-~~~-~--~-----~~~~~liDtPGi 157 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSK---KVCKVAPIP-GETKVW-QYI-T--L-----MKRIYLIDCPGV 157 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcC---CceeeCCCC-CeeEeE-EEE-E--c-----CCCEEEEECcCC
Confidence 4789999999999999999985 345666654 345542 222 1 1 123789999995
No 17
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.62 E-value=0.00035 Score=65.95 Aligned_cols=94 Identities=27% Similarity=0.402 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec---CcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM---RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~---~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D 78 (542)
-|+++|...+|||+|.|+|.|.. ..+|+. +-....|.+-+ .+..+.++|+||+.+... .+.|
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~----~~v~n~pG~Tv~~~~g~~~~----------~~~~~~lvDlPG~ysl~~-~s~e 66 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK----QKVGNWPGTTVEKKEGIFKL----------GDQQVELVDLPGIYSLSS-KSEE 66 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----EEEEESTTSSSEEEEEEEEE----------TTEEEEEEE----SSSSS-SSHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ceecCCCCCCeeeeeEEEEe----------cCceEEEEECCCcccCCC-CCcH
Confidence 48999999999999999999974 666542 22345677754 247899999999877532 2334
Q ss_pred hHHHHHHHhhhcc--EEEcCCCCcchHhhhh-HHHHHHH
Q 009154 79 DRIFALATVMSSV--LIYNLPETIREADISR-LSFAVEL 114 (542)
Q Consensus 79 ~~IFaLa~LLSS~--lIYN~~g~I~e~al~~-L~~v~el 114 (542)
.++ +...+++.- .|.|+ +|...++. |.+..++
T Consensus 67 e~v-~~~~l~~~~~D~ii~V---vDa~~l~r~l~l~~ql 101 (156)
T PF02421_consen 67 ERV-ARDYLLSEKPDLIIVV---VDATNLERNLYLTLQL 101 (156)
T ss_dssp HHH-HHHHHHHTSSSEEEEE---EEGGGHHHHHHHHHHH
T ss_pred HHH-HHHHHhhcCCCEEEEE---CCCCCHHHHHHHHHHH
Confidence 444 333333222 45554 45555543 5444444
No 18
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.58 E-value=0.0008 Score=70.09 Aligned_cols=131 Identities=17% Similarity=0.217 Sum_probs=67.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDRI 81 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~I 81 (542)
.|.|+|..+.|||+++|.|+|.. .+.+++. .++|...-... .. ..+..+.++||+|+.+.+.. .+..+
T Consensus 40 rIllvGktGVGKSSliNsIlG~~---v~~vs~f-~s~t~~~~~~~----~~--~~G~~l~VIDTPGL~d~~~~--~e~~~ 107 (313)
T TIGR00991 40 TILVMGKGGVGKSSTVNSIIGER---IATVSAF-QSEGLRPMMVS----RT--RAGFTLNIIDTPGLIEGGYI--NDQAV 107 (313)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---cccccCC-CCcceeEEEEE----EE--ECCeEEEEEECCCCCchHHH--HHHHH
Confidence 58899999999999999999963 2222221 12222111111 11 13567999999999874321 12112
Q ss_pred HHHHHhh----hccEEE-cCC--CCcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeeccc--cccchHHHH
Q 009154 82 FALATVM----SSVLIY-NLP--ETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFL--QGKSVQEMV 152 (542)
Q Consensus 82 FaLa~LL----SS~lIY-N~~--g~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~--~g~t~~eyL 152 (542)
-.+...+ ..+++| +.. ..+++.+.+.++.+.+ ++|+ +. ..+.-.++.- -|.. +|.|.++|+
T Consensus 108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe----~FG~----~i-w~~~IVVfTh-~d~~~pd~~~~e~fv 177 (313)
T TIGR00991 108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITD----SFGK----DI-WRKSLVVLTH-AQFSPPDGLEYNDFF 177 (313)
T ss_pred HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHH----Hhhh----hh-hccEEEEEEC-CccCCCCCCCHHHHH
Confidence 1222212 112333 322 2466666666655544 3443 11 1222233332 3544 456777777
Q ss_pred HH
Q 009154 153 HD 154 (542)
Q Consensus 153 e~ 154 (542)
.+
T Consensus 178 ~~ 179 (313)
T TIGR00991 178 SK 179 (313)
T ss_pred Hh
Confidence 54
No 19
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.55 E-value=0.00072 Score=64.04 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=40.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|.|+|+.++|||+|+|+|.+.. ....++++ .++|..+=.|..+ ..+.++||+|++..
T Consensus 20 ~i~ivG~~~~GKStlin~l~~~~--~~~~~~~~-~~~t~~~~~~~~~---------~~~~liDtpG~~~~ 77 (179)
T TIGR03598 20 EIAFAGRSNVGKSSLINALTNRK--KLARTSKT-PGRTQLINFFEVN---------DGFRLVDLPGYGYA 77 (179)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC--CcccccCC-CCcceEEEEEEeC---------CcEEEEeCCCCccc
Confidence 48999999999999999999852 11223332 3567766554321 15889999998753
No 20
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.50 E-value=0.00044 Score=62.56 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=39.2
Q ss_pred EEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 4 QVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 4 sV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
+++|..++|||+|+|+|++.. ...+. ...++|......... ..+..+.++||+|.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~---~~~~~-~~~~~t~~~~~~~~~------~~~~~~~i~DtpG~~~~~ 59 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR---DAIVE-DTPGVTRDRIYGEAE------WGGREFILIDTGGIEPDD 59 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc---EEeec-CCCCceeCceeEEEE------ECCeEEEEEECCCCCCch
Confidence 479999999999999999853 12222 233555554432221 234679999999997743
No 21
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.48 E-value=0.00067 Score=76.57 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=45.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN 75 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~ 75 (542)
-|.++|+.+.|||+++|.|+|. ..|.+++ ..++|+.+-.+... . .+..+.++||||+++...+.
T Consensus 120 rIvLVGKTGVGKSSLINSILGe---kvf~vss-~~~~TTr~~ei~~~----i--dG~~L~VIDTPGL~dt~~dq 183 (763)
T TIGR00993 120 NILVLGKSGVGKSATINSIFGE---VKFSTDA-FGMGTTSVQEIEGL----V--QGVKIRVIDTPGLKSSASDQ 183 (763)
T ss_pred EEEEECCCCCCHHHHHHHHhcc---ccccccC-CCCCceEEEEEEEE----E--CCceEEEEECCCCCccccch
Confidence 4889999999999999999996 3576643 34566655332211 1 24679999999999865443
No 22
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.36 E-value=0.00072 Score=65.48 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=52.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-CCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhH
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD-EGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR 80 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~-~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~ 80 (542)
=|+|+|+.++|||+|+|.|+|.... .|-.... ...+|.-. .++.. +....+.++||+|+++.......-..
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~-~~~~t~~~----~~~~~---~~~~~l~l~DtpG~~~~~~~~~~~l~ 74 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVGHEEEGAAPTG-VVETTMKR----TPYPH---PKFPNVTLWDLPGIGSTAFPPDDYLE 74 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCccccC-ccccccCc----eeeec---CCCCCceEEeCCCCCcccCCHHHHHH
Confidence 3789999999999999999985311 1111000 11112111 01111 11346889999999864333211111
Q ss_pred HHHHHHhhhccEEEcCCCCcchHhhhhHHHHH
Q 009154 81 IFALATVMSSVLIYNLPETIREADISRLSFAV 112 (542)
Q Consensus 81 IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~ 112 (542)
-+.+ .=...+++-+.+.+++.+...++.+.
T Consensus 75 ~~~~--~~~d~~l~v~~~~~~~~d~~~~~~l~ 104 (197)
T cd04104 75 EMKF--SEYDFFIIISSTRFSSNDVKLAKAIQ 104 (197)
T ss_pred HhCc--cCcCEEEEEeCCCCCHHHHHHHHHHH
Confidence 1111 11345555555667776666665543
No 23
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.36 E-value=0.00038 Score=64.69 Aligned_cols=54 Identities=30% Similarity=0.334 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
.+.++|..++|||+|+|.|++.. .+.++... .+|+. |.|.. . +..+.++||||+
T Consensus 102 ~~~~~G~~~~GKstlin~l~~~~---~~~~~~~~-~~t~~-~~~~~-~-------~~~~~liDtPG~ 155 (155)
T cd01849 102 TVGVIGYPNVGKSSVINALLNKL---KLKVGNVP-GTTTS-QQEVK-L-------DNKIKLLDTPGI 155 (155)
T ss_pred EEEEEccCCCCHHHHHHHHHccc---cccccCCC-Ccccc-eEEEE-e-------cCCEEEEECCCC
Confidence 47899999999999999999853 45555542 23333 55531 1 235889999996
No 24
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.35 E-value=0.0012 Score=63.62 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|+.++|||+|+|.|.+......-..+++..+.+..+-. +....+.++||+|+.+
T Consensus 43 ~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~----------~~~~~~~i~Dt~G~~~ 101 (204)
T cd01878 43 TVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL----------PDGREVLLTDTVGFIR 101 (204)
T ss_pred eEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe----------cCCceEEEeCCCcccc
Confidence 5899999999999999999985311000112233333322221 1223788999999854
No 25
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.34 E-value=0.0016 Score=69.55 Aligned_cols=94 Identities=24% Similarity=0.229 Sum_probs=49.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC-CCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhH
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC-DEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR 80 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~-~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~ 80 (542)
|+|+|..++|||+|+|.|.|... .+|-. +|. -.+|+..--+..|. -.+|.+.|.||.|.......
T Consensus 38 IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv--~etT~~~~~Y~~p~-------~pnv~lWDlPG~gt~~f~~~---- 104 (376)
T PF05049_consen 38 IAVTGESGSGKSSFINALRGLGHEDEGAAPTGV--VETTMEPTPYPHPK-------FPNVTLWDLPGIGTPNFPPE---- 104 (376)
T ss_dssp EEEEESTTSSHHHHHHHHTT--TTSTTS--SSS--HSCCTS-EEEE-SS--------TTEEEEEE--GGGSS--HH----
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC--CcCCCCCeeCCCCC-------CCCCeEEeCCCCCCCCCCHH----
Confidence 89999999999999999988632 23332 222 23455554444332 23588889999987543322
Q ss_pred HHHHHHhhh--ccEEEcCCCCcchHhhhhHH
Q 009154 81 IFALATVMS--SVLIYNLPETIREADISRLS 109 (542)
Q Consensus 81 IFaLa~LLS--S~lIYN~~g~I~e~al~~L~ 109 (542)
=|-=.+-++ ..+|.=+.+...+++++...
T Consensus 105 ~Yl~~~~~~~yD~fiii~s~rf~~ndv~La~ 135 (376)
T PF05049_consen 105 EYLKEVKFYRYDFFIIISSERFTENDVQLAK 135 (376)
T ss_dssp HHHHHTTGGG-SEEEEEESSS--HHHHHHHH
T ss_pred HHHHHccccccCEEEEEeCCCCchhhHHHHH
Confidence 111111122 34666666778877776443
No 26
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.32 E-value=0.00037 Score=71.52 Aligned_cols=64 Identities=27% Similarity=0.305 Sum_probs=43.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec-------CcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM-------RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~-------~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|.|+|..++|||+|+|.|++.. +..... ..++|.++-.....+. .+|....+.++||+|+|+.
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~----~~~~~~~~~~~~~~~~~T~~i~~~~~~i~--~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTK----LIPSDYPPDPAEEHIDKTVEIKSSKAEIE--ENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCC----CccccCCCCccccccCCceEEEEEEEEEE--ECCEEEEEEEEecCCcccc
Confidence 37899999999999999999863 322111 1345656554443332 2355678999999999873
No 27
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.22 E-value=0.00049 Score=70.85 Aligned_cols=60 Identities=28% Similarity=0.298 Sum_probs=45.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
|+|+|+...|||+|-|++.|+ +-+.++..++.+|.-|---+. .++..++|.||||+-+..
T Consensus 75 vavIG~PNvGKStLtN~mig~---kv~~vS~K~~TTr~~ilgi~t-------s~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 75 VAVIGAPNVGKSTLTNQMIGQ---KVSAVSRKVHTTRHRILGIIT-------SGETQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEcCCCcchhhhhhHhhCC---ccccccccccceeeeeeEEEe-------cCceEEEEecCCcccccc
Confidence 899999999999999999997 467777666555544433221 357889999999987643
No 28
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.17 E-value=0.0015 Score=58.08 Aligned_cols=61 Identities=26% Similarity=0.298 Sum_probs=36.9
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 5 VIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 5 V~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
|+|+.++|||+|+|.|.+.. +.......++|...-...... +....+.++||+|+.+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dt~g~~~~~~~ 61 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE----VAIVSPVPGTTTDPVEYVWEL-----GPLGPVVLIDTPGIDEAGGL 61 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc----ccccCCCCCcEECCeEEEEEe-----cCCCcEEEEECCCCCccccc
Confidence 58999999999999999863 221111123332222111110 12567899999999875443
No 29
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.13 E-value=0.002 Score=59.53 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=35.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|..++|||+|+|.|.+.. ..++. ++ ..+.|.-.. +....+.++||+|+.+
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~----~~v~~~~~~t~-~~~~~~~~~---------~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAK----PKIADYPFTTL-VPNLGVVRV---------DDGRSFVVADIPGLIE 60 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCC----ccccCCCcccc-CCcceEEEc---------CCCCeEEEEecCcccC
Confidence 7999999999999999999853 12221 21 122233211 1224789999999853
No 30
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.12 E-value=0.00041 Score=65.80 Aligned_cols=59 Identities=31% Similarity=0.367 Sum_probs=33.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeee-------eecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGV-------GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v-------g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.++.++|+.+.|||+|+|.|++.. -+.+ +.+.+.+|..-+... | ..-+++||||+.+.+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~---~~~t~~is~~~~rGkHTTt~~~l~~l-~---------~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA---KQKTGEISEKTGRGKHTTTHRELFPL-P---------DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-------S--------------SEEEEEE-T---------TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc---chhhhhhhcccCCCcccCCCeeEEec-C---------CCcEEEECCCCCccc
Confidence 368899999999999999999863 2333 223333333333211 1 135889999997743
No 31
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.12 E-value=0.0011 Score=60.09 Aligned_cols=57 Identities=23% Similarity=0.220 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|+++|+.++|||+|+|.|.+.. ..+-.+....+|.-++.... +..+.++||+|+++.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~---~~~~~~~~~~~t~~~~~~~~---------~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRK---KLARTSKTPGKTQLINFFNV---------NDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC---ceeeecCCCCcceeEEEEEc---------cCeEEEecCCCcccc
Confidence 7899999999999999999531 12222222344554443321 127889999998774
No 32
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.12 E-value=0.0026 Score=57.32 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|+++|+.++|||+|+|+|.+.. +..-....++|.-+. ...+ . -.+..+.++||+|+.+..
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~----~~~~~~~~~~~~~~~--~~~~--~--~~~~~~~i~DtpG~~~~~ 63 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRD----RAIVSDIAGTTRDVI--EESI--D--IGGIPVRLIDTAGIRETE 63 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc----eEeccCCCCCccceE--EEEE--E--eCCEEEEEEECCCcCCCc
Confidence 58999999999999999999852 322122222332111 0111 1 124578899999987643
No 33
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.08 E-value=0.00087 Score=61.19 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|+|..++|||+|+|+|.+.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~ 23 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGI 23 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCc
Confidence 68999999999999999999974
No 34
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.017 Score=65.05 Aligned_cols=79 Identities=15% Similarity=0.288 Sum_probs=50.9
Q ss_pred eEEEeecCCcccccCcchhhhHHHHHHHhhhccEE--EcCCCCcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEE
Q 009154 59 SVFYLDTEGFESIGKSNVYDDRIFALATVMSSVLI--YNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVW 136 (542)
Q Consensus 59 ~vlllDTEG~~~~e~~~~~D~~IFaLa~LLSS~lI--YN~~g~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw 136 (542)
.++++|.||++. +...|+||++... =..++| -|.-.+.+.++.+-++.+.+ + +| .++
T Consensus 207 DivliDsPGld~---~se~tswid~~cl-daDVfVlV~NaEntlt~sek~Ff~~vs~-----------~----Kp--niF 265 (749)
T KOG0448|consen 207 DIVLIDSPGLDV---DSELTSWIDSFCL-DADVFVLVVNAENTLTLSEKQFFHKVSE-----------E----KP--NIF 265 (749)
T ss_pred cceeccCCCCCC---chhhhHHHHHHhh-cCCeEEEEecCccHhHHHHHHHHHHhhc-----------c----CC--cEE
Confidence 689999999875 4567899997743 234444 47777766666665555443 1 46 466
Q ss_pred EEeeccccccchHHHHHHHhhc
Q 009154 137 LIQRDFLQGKSVQEMVHDALQR 158 (542)
Q Consensus 137 ~vvRDf~~g~t~~eyLe~~L~~ 158 (542)
++.--|..-.+..+|.|..++.
T Consensus 266 IlnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 266 ILNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred EEechhhhhcccHHHHHHHHHH
Confidence 6655665444566777776654
No 35
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.07 E-value=0.0012 Score=60.91 Aligned_cols=59 Identities=24% Similarity=0.152 Sum_probs=40.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
..|.++|..++|||+|+|+|.+.. |.+++. ...|+++-..... .+++.+.++||+|..+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~----~~~~~~-~~~t~~~~~~~~~------~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAK----PEVAPY-PFTTKSLFVGHFD------YKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCC----CccCCC-CCcccceeEEEEc------cCceEEEEEECCCcCC
Confidence 368999999999999999999863 433221 1234554433321 2357899999999854
No 36
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.07 E-value=0.0053 Score=58.32 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=38.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|..++|||+|+|.|++... --.+.++ .++|..+-.+. .+..+.++||+|++.
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~~~--~~~~~~~-~~~t~~~~~~~---------~~~~l~l~DtpG~~~ 82 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNRKN--LARTSKT-PGRTQLINFFE---------VNDKLRLVDLPGYGY 82 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC--cccccCC-CCceeEEEEEe---------cCCeEEEeCCCCCCC
Confidence 389999999999999999998520 0122222 24565554322 125689999999764
No 37
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.02 E-value=0.0014 Score=59.99 Aligned_cols=55 Identities=25% Similarity=0.296 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
.+.++|..++|||+|+|.|++.. ...++.. ..+|+.... +.. ++ .+.++||+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~---~~~~~~~-~~~~~~~~~----~~~--~~---~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK---KVSVSAT-PGKTKHFQT----IFL--TP---TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ceeeCCC-CCcccceEE----EEe--CC---CEEEEECCCcC
Confidence 37899999999999999999863 2244332 223443221 222 11 47899999974
No 38
>PRK15494 era GTPase Era; Provisional
Probab=97.00 E-value=0.0039 Score=65.86 Aligned_cols=54 Identities=31% Similarity=0.417 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee-eecCcCcc----ceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV-GHMRDTKT----KGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v-g~~~~~~T----kGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|..++|||+|+|+|.|.. |.. .+.. ..| .|++.+ ++..+.++||+|...
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k----~~ivs~k~-~tTr~~~~~~~~~----------~~~qi~~~DTpG~~~ 112 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEK----LSIVTPKV-QTTRSIITGIITL----------KDTQVILYDTPGIFE 112 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc----eeeccCCC-CCccCcEEEEEEe----------CCeEEEEEECCCcCC
Confidence 48999999999999999999863 432 3322 223 344432 245689999999854
No 39
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.99 E-value=0.0019 Score=67.55 Aligned_cols=105 Identities=27% Similarity=0.246 Sum_probs=58.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----CCCee-eeecCc----CccceEEeeecccccccCCCceeEEEeecCC----
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC-----DEGFG-VGHMRD----TKTKGIWVWGNPVEMEIDGSRTSVFYLDTEG---- 67 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~-----~~gF~-vg~~~~----~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG---- 67 (542)
||+|+|+++||||+|||.|.+.+. .-.|. +++..+ ..|.||-.... .-.++++||+-
T Consensus 190 VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~Id~~i~---------q~~i~fldtqpl~sf 260 (491)
T KOG4181|consen 190 VIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHKIDPNIG---------QKSILFLDTQPLQSF 260 (491)
T ss_pred EEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccceeccccccc---------cceEEeeccccccch
Confidence 899999999999999999998531 12342 222111 23555544321 22455555554
Q ss_pred -------------cccccCcchh----hhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHh
Q 009154 68 -------------FESIGKSNVY----DDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFY 119 (542)
Q Consensus 68 -------------~~~~e~~~~~----D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~ 119 (542)
+....++.+| .-.+.|+..-+|.++|.=+.+..|++-+.. .+.|+.+.
T Consensus 261 si~e~~i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d~~lir~----L~~Ae~~r 325 (491)
T KOG4181|consen 261 SIRERHILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLADEQLIRL----LNAAERLR 325 (491)
T ss_pred HHHhhhhccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhHHHHHHH----HHHHHhhC
Confidence 3333334333 124444444447788877766655554444 45566553
No 40
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.98 E-value=0.0019 Score=59.43 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=43.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|+|.+.. .-|. .....|.|........+.. ++....+.+.||+|.
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~~--~~~~---~~~~~t~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSNG--AVFP---KNYLMTTGCDFVVKEVPVD-TDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC--CCcC---ccCCCceEEEEEEEEEEeC-CCCEEEEEEEECCCH
Confidence 7899999999999999998531 1242 2345577877665554433 356789999999994
No 41
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=96.97 E-value=0.0022 Score=66.08 Aligned_cols=58 Identities=28% Similarity=0.261 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|.|+|..++|||+|+|.|.|.. ...+++. ..+|++.- |. .. +..+.++||||+....
T Consensus 123 ~~~~~G~pnvGKSsliN~l~~~~---~~~~~~~-~g~T~~~~-~~---~~-----~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 123 RAMIIGIPNVGKSTLINRLAGKK---IAKTGNR-PGVTKAQQ-WI---KL-----GKGLELLDTPGILWPK 180 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---ccccCCC-CCeEEEEE-EE---Ee-----CCcEEEEECCCcCCCC
Confidence 48899999999999999999863 3444443 34577643 21 11 1248899999986644
No 42
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.95 E-value=0.0036 Score=58.48 Aligned_cols=102 Identities=19% Similarity=0.280 Sum_probs=52.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCeee--eecC-cCccceEEeeeccccccc---CCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEGFGV--GHMR-DTKTKGIWVWGNPVEMEI---DGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~gF~v--g~~~-~~~TkGIWmW~~p~~~~~---~g~~~~vlllDTEG~~~~e 72 (542)
-|+++|..++|||+|+|+|++... ..+|.- .++. ...+.|+=.-........ ++.++.+.++||+|..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 489999999999999999997420 112220 0100 011223322111111100 3567889999999986421
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhH
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRL 108 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L 108 (542)
+...-++...=.-+++|.+....+.+++..+
T Consensus 82 -----~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~ 112 (179)
T cd01890 82 -----YEVSRSLAACEGALLLVDATQGVEAQTLANF 112 (179)
T ss_pred -----HHHHHHHHhcCeEEEEEECCCCccHhhHHHH
Confidence 1212122221122467776655554555444
No 43
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.93 E-value=0.0071 Score=55.26 Aligned_cols=60 Identities=28% Similarity=0.298 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|.++|..++|||+|+|+|++.. ....++ ...+|.... ...... .+..+.++||+|.++.
T Consensus 4 ~i~i~G~~~~GKstli~~l~~~~---~~~~~~-~~~~~~~~~----~~~~~~--~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 4 RIAIIGRPNVGKSSLVNALLGEE---RVIVSD-IAGTTRDSI----DVPFEY--DGKKYTLIDTAGIRRK 63 (174)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcc---ceeccC-CCCCccCce----eeEEEE--CCeeEEEEECCCCccc
Confidence 58999999999999999999853 222222 112222111 011111 2345789999998764
No 44
>PRK12289 GTPase RsgA; Reviewed
Probab=96.92 E-value=0.0013 Score=69.78 Aligned_cols=59 Identities=29% Similarity=0.407 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCc-----C-ccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD-----T-KTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~-----~-~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
++.++|+.+.|||+|+|.|++.. ...++.... + +|+..=++..| + + .+|+||||+...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~---~~~t~~vs~~~~rGrHTT~~~~l~~l~------~-g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDV---ELRVGKVSGKLGRGRHTTRHVELFELP------N-G--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcc---ccccccccCCCCCCCCcCceeEEEECC------C-C--cEEEeCCCccccc
Confidence 57899999999999999999753 344433211 1 34555443322 1 1 2799999986543
No 45
>PRK12288 GTPase RsgA; Reviewed
Probab=96.91 E-value=0.0011 Score=70.30 Aligned_cols=59 Identities=27% Similarity=0.359 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCc-----Cc-cceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD-----TK-TKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~-----~~-TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
++.++|+.+.|||+|+|.|++.. ...+|.-.. ++ |+..-+...| +. ..++||||+...+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~---~~~t~~is~~~~rGrHTT~~~~l~~l~------~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA---EILVGDVSDNSGLGQHTTTAARLYHFP------HG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc---ceeeccccCcCCCCcCceeeEEEEEec------CC---CEEEECCCCCccc
Confidence 47899999999999999999863 355544322 22 3333322211 11 2589999997643
No 46
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=96.90 E-value=0.0017 Score=59.31 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=36.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|+|+|++.. |... ...|.|.-.-...+ ..++....+.++||+|.
T Consensus 3 i~liG~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~--~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT----FDNQ---YQATIGIDFLSKTM--YLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCcc---CCCceeeeEEEEEE--EECCEEEEEEEEECCCc
Confidence 7899999999999999999864 4332 12233332111111 11245577899999994
No 47
>PRK11058 GTPase HflX; Provisional
Probab=96.88 E-value=0.005 Score=67.14 Aligned_cols=54 Identities=24% Similarity=0.223 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee----eecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV----GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v----g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
.|+|+|..++|||+|+|+|.+.. +.+ +.|.++.+.-+-+++ ...++++||.|+.
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~----~~v~~~~~tTld~~~~~i~l~~----------~~~~~l~DTaG~~ 256 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEAR----VYAADQLFATLDPTLRRIDVAD----------VGETVLADTVGFI 256 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----eeeccCCCCCcCCceEEEEeCC----------CCeEEEEecCccc
Confidence 58999999999999999999853 323 345555554443321 2257899999984
No 48
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.87 E-value=0.0016 Score=68.67 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=43.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|=++|+.++|||+++|.|++.+-.+++..-+ ...+..+++=+=..-..+..+|....+-++||||+||
T Consensus 26 im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 26 IMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred EEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 5689999999999999999974333332111 1111233433332223333357788999999999998
No 49
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.86 E-value=0.0061 Score=63.55 Aligned_cols=101 Identities=24% Similarity=0.209 Sum_probs=63.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcch---hh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNV---YD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~---~D 78 (542)
-|.|+|....|||+|++.|-+-. =.|.+- -=+||||.+-.-- .....+=++||||+-|..-++. ..
T Consensus 170 TivVaG~PNVGKSSlv~~lT~Ak----pEvA~Y-PFTTK~i~vGhfe------~~~~R~QvIDTPGlLDRPl~ErN~IE~ 238 (346)
T COG1084 170 TIVVAGYPNVGKSSLVRKLTTAK----PEVAPY-PFTTKGIHVGHFE------RGYLRIQVIDTPGLLDRPLEERNEIER 238 (346)
T ss_pred eEEEecCCCCcHHHHHHHHhcCC----CccCCC-CccccceeEeeee------cCCceEEEecCCcccCCChHHhcHHHH
Confidence 37899999999999999999863 222221 1258999875421 2345778899999877544443 34
Q ss_pred hHHHHHHHhhhccEEEcCCC--CcchHhhhhHHHHHHH
Q 009154 79 DRIFALATVMSSVLIYNLPE--TIREADISRLSFAVEL 114 (542)
Q Consensus 79 ~~IFaLa~LLSS~lIYN~~g--~I~e~al~~L~~v~el 114 (542)
..|.||.- |-++.+|=..- +.-=+-=+|.+++-++
T Consensus 239 qAi~AL~h-l~~~IlF~~D~Se~cgy~lE~Q~~L~~eI 275 (346)
T COG1084 239 QAILALRH-LAGVILFLFDPSETCGYSLEEQISLLEEI 275 (346)
T ss_pred HHHHHHHH-hcCeEEEEEcCccccCCCHHHHHHHHHHH
Confidence 78888865 45666664432 2221222455666554
No 50
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=96.83 E-value=0.0061 Score=59.23 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=38.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|+|+|..++|||+|+|++.+.. |.-. ..| |.|.-.....+ ..+|....+.++||+|+..
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~----f~~~--~~p-t~~~~~~~~~i--~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE----FPEE--YIP-TEHRRLYRPAV--VLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC----CCcc--cCC-ccccccceeEE--EECCEEEEEEEEeCCCccc
Confidence 37899999999999999999753 5321 112 22221111111 1235667889999999764
No 51
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=96.83 E-value=0.0016 Score=67.20 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=38.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeee----ecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVG----HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg----~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|=|+|..++|||+|+|.|++.. ..... +...+..+.+-+-...+....++....+-++||||+|+
T Consensus 7 ImVvG~sG~GKTTFIntL~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 7 IMVVGESGLGKTTFINTLFNSD---IISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEECTTSSHHHHHHHHHTSS------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred EEEECCCCCCHHHHHHHHHhcc---cccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 4589999999999999999863 22221 11112222222323333333356778899999999987
No 52
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.82 E-value=0.0022 Score=56.90 Aligned_cols=58 Identities=33% Similarity=0.296 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|..++|||+|+|+|++.. +..... ...|...+...... ++....+.++||+|..
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~----~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK----FITEYK-PGTTRNYVTTVIEE----DGKTYKFNLLDTAGQE 61 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC----CcCcCC-CCceeeeeEEEEEE----CCEEEEEEEEECCCcc
Confidence 7899999999999999999852 443332 23444444322211 2334778999999943
No 53
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.81 E-value=0.0012 Score=67.33 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=40.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
|=++|.++.|||.|.|.||+..-..-=.||.+++++|.- |. ......+.|.||||+|+..+.
T Consensus 42 vLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~---------~~~~~~l~lwDtPG~gdg~~~ 103 (296)
T COG3596 42 VLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RL---------SYDGENLVLWDTPGLGDGKDK 103 (296)
T ss_pred EEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-Hh---------hccccceEEecCCCcccchhh
Confidence 348999999999999999964312222345555444321 11 134478999999999884433
No 54
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=96.81 E-value=0.4 Score=56.63 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHhHhhcc--hhHHHHhhhhhcccccccccccCCcchhHHHHH----HHH
Q 009154 334 EAYKNVIMANEYQSSKICESLYTR-CEDKMDQLQVLRL--PSMAKFNAGFLQCNQSFAHECVGPSKANYEQRM----MKM 406 (542)
Q Consensus 334 ~~~~~~~~~Ne~~S~~~C~~l~~~-~e~kL~~l~~~~~--~~~~~~~~g~~~~~~~f~~~~~GP~~~~~~~~l----~~~ 406 (542)
+.++..+..+.+-|...|+..+.. .+.=++++..... .-..++.+.+ ..|+..++||+...|.++| .++
T Consensus 381 ~~l~~~l~~d~kFs~~~C~~~l~~A~~~Y~~~lP~~Y~~~~H~~~l~~A~----~~~~~~arGp~~~~~~~~L~~~C~~~ 456 (895)
T PF10220_consen 381 KNLEKSLDIDTKFSEHRCEKALPLAKEAYQENLPAHYSSAEHENKLAQAL----RVFESHARGPAVEKYLEKLQEECDAI 456 (895)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHHHHH----HHHHHHccCchHHHHHHHHHHHHHHH
Confidence 455666777888899999998642 2333344443221 1244555555 5789999999999888888 455
Q ss_pred HHHHH
Q 009154 407 LGKSR 411 (542)
Q Consensus 407 ~~~~~ 411 (542)
|..++
T Consensus 457 W~~Gr 461 (895)
T PF10220_consen 457 WQSGR 461 (895)
T ss_pred HHHHH
Confidence 55554
No 55
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=96.80 E-value=0.0077 Score=64.01 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee----eecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV----GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v----g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
.|+++|..++|||+|+|.|.+.. +-+ +.|.++.++-+-+ ..+..+.++||.|+-
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~~----~~v~~~~~tT~d~~~~~i~~----------~~~~~i~l~DT~G~~ 248 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGAD----VYAADQLFATLDPTTRRLDL----------PDGGEVLLTDTVGFI 248 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----eeeccCCccccCCEEEEEEe----------CCCceEEEEecCccc
Confidence 58999999999999999999852 322 3455554443322 123578999999983
No 56
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.79 E-value=0.0011 Score=57.86 Aligned_cols=57 Identities=32% Similarity=0.373 Sum_probs=37.7
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 5 VIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 5 V~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+.++|||+|+|.|.+.. .+ +.....|. +......+.. .+....+.++||+|..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~---~~---~~~~~~t~-~~~~~~~~~~--~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE---FV---PEEYETTI-IDFYSKTIEV--DGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCC---cC---Ccccccch-hheeeEEEEE--CCEEEEEEEEecCChHH
Confidence 58999999999999999863 11 11122233 5544443332 23467899999999765
No 57
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.75 E-value=0.0023 Score=68.91 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=38.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|...+|||+|||.|.+.. -.+++ |+..-..|++.+. ....++++||||+.
T Consensus 162 ValVG~PNaGKSTLln~Lt~~k----~~vs~~p~TT~~p~~Giv~~~---------~~~~i~~vDtPGi~ 218 (390)
T PRK12298 162 VGLLGLPNAGKSTFIRAVSAAK----PKVADYPFTTLVPNLGVVRVD---------DERSFVVADIPGLI 218 (390)
T ss_pred EEEEcCCCCCHHHHHHHHhCCc----ccccCCCCCccCcEEEEEEeC---------CCcEEEEEeCCCcc
Confidence 8999999999999999999853 13332 2223345665431 23568999999985
No 58
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.74 E-value=0.001 Score=61.75 Aligned_cols=21 Identities=48% Similarity=0.782 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|.+++|||+|+|.|+|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~ 21 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGR 21 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTS
T ss_pred CEEEcCCCCCHHHHHHHHHhc
Confidence 789999999999999999996
No 59
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.74 E-value=0.0018 Score=64.78 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=43.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCC-CeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDE-GFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~-gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|-|+|..+.|||+|.|.|+..+-.+ +=+.++. .|-++-+=|=+..+.+..+|-+..+-++||+|+||.
T Consensus 49 IMVVgqSglgkstlinTlf~s~v~~~s~~~~~~-~p~pkT~eik~~thvieE~gVklkltviDTPGfGDq 117 (336)
T KOG1547|consen 49 IMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSA-EPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEecCCCCchhhHHHHHHHHHhhccCCCccc-CcccceEEEEeeeeeeeecceEEEEEEecCCCcccc
Confidence 6689999999999999999642111 1111111 133333333334444444677889999999999984
No 60
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.72 E-value=0.0027 Score=58.53 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=38.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|+|+|+.++|||+|+|++.+.. |...+ ..|.|+=.....+. .++....+-++||+|.
T Consensus 6 i~vvG~~~~GKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~~--~~~~~~~~~l~D~~g~ 62 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTRNE----FNLDS---KSTIGVEFATRSIQ--IDGKTIKAQIWDTAGQ 62 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCCC---CCccceEEEEEEEE--ECCEEEEEEEEeCCCh
Confidence 7899999999999999999753 54222 23445433332222 2355577889999995
No 61
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.72 E-value=0.0075 Score=65.36 Aligned_cols=99 Identities=26% Similarity=0.327 Sum_probs=53.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcch---hh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNV---YD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~---~D 78 (542)
-|+|+|..++|||+|+|+|+|.. ...+++. ...|.-.. ..++. ..+..+.++||+|+.....-.. +-
T Consensus 175 ~v~ivG~~n~GKStlin~ll~~~---~~~~~~~-~gtt~~~~--~~~~~----~~~~~~~lvDT~G~~~~~~~~~~~e~~ 244 (435)
T PRK00093 175 KIAIIGRPNVGKSSLINALLGEE---RVIVSDI-AGTTRDSI--DTPFE----RDGQKYTLIDTAGIRRKGKVTEGVEKY 244 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ceeecCC-CCceEEEE--EEEEE----ECCeeEEEEECCCCCCCcchhhHHHHH
Confidence 48999999999999999999863 3333332 12222111 01111 1245678999999865322211 10
Q ss_pred hHHHHHHHh-hh--ccEEEcCCCCcchHhhhhHHH
Q 009154 79 DRIFALATV-MS--SVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 79 ~~IFaLa~L-LS--S~lIYN~~g~I~e~al~~L~~ 110 (542)
...-++..+ -+ -++|+.....+.+++...+..
T Consensus 245 ~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~ 279 (435)
T PRK00093 245 SVIRTLKAIERADVVLLVIDATEGITEQDLRIAGL 279 (435)
T ss_pred HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 111122111 12 246777776677766654433
No 62
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.72 E-value=0.0098 Score=64.24 Aligned_cols=98 Identities=26% Similarity=0.317 Sum_probs=52.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchh-h--
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVY-D-- 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~-D-- 78 (542)
-|+|+|..++|||+|+|+|+|.. ...+.+ ....|.... ..++.. .+..+.++||+|+....+-... +
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~---~~~~~~-~~gtt~~~~--~~~~~~----~~~~~~liDT~G~~~~~~~~~~~e~~ 243 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEE---RVIVSD-IAGTTRDSI--DIPFER----NGKKYLLIDTAGIRRKGKVTEGVEKY 243 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---eeecCC-CCCceECcE--eEEEEE----CCcEEEEEECCCccccccchhhHHHH
Confidence 48999999999999999999853 222222 112222110 011111 2347889999998653322111 1
Q ss_pred hHHHHHHHhh-h--ccEEEcCCCCcchHhhhhHH
Q 009154 79 DRIFALATVM-S--SVLIYNLPETIREADISRLS 109 (542)
Q Consensus 79 ~~IFaLa~LL-S--S~lIYN~~g~I~e~al~~L~ 109 (542)
...=++..+- + -++||.....+++++...+.
T Consensus 244 ~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~ 277 (429)
T TIGR03594 244 SVLRTLKAIERADVVLLVLDATEGITEQDLRIAG 277 (429)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHH
Confidence 1111121111 2 24677777666766654443
No 63
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.69 E-value=0.01 Score=55.33 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~ 24 (542)
|+|+|..++|||+|+|.|.+..
T Consensus 2 v~v~G~~~~GKStlln~l~~~~ 23 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVT 23 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 7899999999999999999863
No 64
>PRK00098 GTPase RsgA; Reviewed
Probab=96.69 E-value=0.0022 Score=66.55 Aligned_cols=23 Identities=35% Similarity=0.261 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
++.++|+.++|||+|+|.|+|..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999999864
No 65
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.68 E-value=0.0032 Score=56.43 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
=|.++|+.++|||+|+|++.+.. +.-. ...|.|.=.-..-+ ..++....+.+.||+|.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~----~~~~---~~~t~~~~~~~~~~--~~~~~~~~~~l~D~~g~ 59 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK----FDEN---YKSTIGVDFKSKTI--EIDGKTVKLQIWDTAGQ 59 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc----CCCc---cCCceeeeeEEEEE--EECCEEEEEEEEecCCh
Confidence 37899999999999999999753 3221 23344433222111 12245678899999996
No 66
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.67 E-value=0.009 Score=64.53 Aligned_cols=55 Identities=25% Similarity=0.350 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccc----eEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK----GIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~Tk----GIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.+.. ....+...+.|. +.--| .+..+.++||+|+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~----~~~v~~~~g~t~d~~~~~~~~----------~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR----DAIVSDTPGVTRDRKYGDAEW----------GGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC----cceecCCCCcccCceEEEEEE----------CCeEEEEEECCCCCC
Confidence 38999999999999999999863 221111112222 21112 245689999999854
No 67
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.65 E-value=0.0032 Score=57.80 Aligned_cols=58 Identities=28% Similarity=0.411 Sum_probs=38.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|+|++.. |... .+.|-|+-.-...+. .++....+-+.||+|..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK----FKED---SQHTIGVEFGSKIIR--VGGKRVKLQIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCCC---CCCceeeeEEEEEEE--ECCEEEEEEEEECcchH
Confidence 7899999999999999999753 4322 233444322222222 23556788999999953
No 68
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.65 E-value=0.0045 Score=56.62 Aligned_cols=60 Identities=20% Similarity=0.264 Sum_probs=39.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
-|.++|..++|||+|+|++.+.. |.- ....|.|.-.-...+.....+..+.+.+.||+|.
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~----~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI----FTK---DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCC---CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 48999999999999999999753 421 1234555543222222222245688999999994
No 69
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=96.65 E-value=0.0032 Score=57.91 Aligned_cols=60 Identities=25% Similarity=0.386 Sum_probs=38.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
+|+|+|..++|||+|+|+|.+.. |... ....+|..+-.-..+... +.+..+.++||+|..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~----~~~~-~~~~~t~~~~~~~~~~~~---~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN----VAAG-EAGGITQHIGAFEVPAEV---LKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc----cccc-cCCCeEEeeccEEEeccc---CCcceEEEEeCCCcH
Confidence 79999999999999999999753 4322 111234333222111110 245678999999964
No 70
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.64 E-value=0.0037 Score=57.15 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=39.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+|++.+.. |.- ....|.|+-.-...+.. ++....+-++||+|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~----~~~---~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR----FVS---KYLPTIGIDYGVKKVSV--RNKEVRVNFFDLSGHP 60 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC---CCCCccceeEEEEEEEE--CCeEEEEEEEECCccH
Confidence 7899999999999999999864 421 12335554332222222 3567889999999963
No 71
>COG1160 Predicted GTPases [General function prediction only]
Probab=96.64 E-value=0.011 Score=64.17 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=57.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee-----eecCcCc-cceEEeeecccccccCCCceeEEEeecCCcccccCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV-----GHMRDTK-TKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN 75 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v-----g~~~~~~-TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~ 75 (542)
+|+|+|....|||+|.|+|.|.. -++ |-|+++. ..|-| .+..+.++||.|+++...+.
T Consensus 5 ~VAIVGRPNVGKSTLFNRL~g~r----~AIV~D~pGvTRDr~y~~~~~------------~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 5 VVAIVGRPNVGKSTLFNRLTGRR----IAIVSDTPGVTRDRIYGDAEW------------LGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred EEEEECCCCCcHHHHHHHHhCCe----eeEeecCCCCccCCccceeEE------------cCceEEEEECCCCCcCCchH
Confidence 69999999999999999999974 232 2233332 23334 23458899999998643221
Q ss_pred -h---hhhHHHHHHHhhhcc--EEEcCCCCcchHhhhhHHHH
Q 009154 76 -V---YDDRIFALATVMSSV--LIYNLPETIREADISRLSFA 111 (542)
Q Consensus 76 -~---~D~~IFaLa~LLSS~--lIYN~~g~I~e~al~~L~~v 111 (542)
. ......|+.- +.+ |+.+....|+++|-+--+++
T Consensus 69 l~~~i~~Qa~~Ai~e--ADvilfvVD~~~Git~~D~~ia~~L 108 (444)
T COG1160 69 LQELIREQALIAIEE--ADVILFVVDGREGITPADEEIAKIL 108 (444)
T ss_pred HHHHHHHHHHHHHHh--CCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 1 2234444444 555 45566666787776544333
No 72
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=96.63 E-value=0.0037 Score=58.22 Aligned_cols=57 Identities=32% Similarity=0.339 Sum_probs=37.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |.... +.|.|.=.....+. .++....+.++||+|.
T Consensus 7 i~vvG~~~vGKSsLl~~l~~~~----~~~~~---~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 7 YIIIGDTGVGKSCLLLQFTDKR----FQPVH---DLTIGVEFGARMIT--IDGKQIKLQIWDTAGQ 63 (168)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCCCC---CCccceeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 7899999999999999999753 43222 22444322211111 2355678899999994
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.62 E-value=0.0038 Score=57.72 Aligned_cols=57 Identities=30% Similarity=0.405 Sum_probs=36.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|+|+|+.++|||+|+|++.+.. |.- ....|.|+-.-...+ ..++....+.+.||+|.
T Consensus 6 v~vvG~~~~GKTsli~~l~~~~----~~~---~~~~t~~~~~~~~~~--~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKSGT----FSE---RQGNTIGVDFTMKTL--EIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred EEEECCCCCCHHHHHHHHhhCC----Ccc---cCCCccceEEEEEEE--EECCEEEEEEEEECCCh
Confidence 7899999999999999998642 421 123344432211111 12344578899999994
No 74
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.62 E-value=0.0029 Score=63.77 Aligned_cols=22 Identities=32% Similarity=0.217 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+.++|+.+.|||+|+|.|++.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 5789999999999999999985
No 75
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.58 E-value=0.019 Score=50.04 Aligned_cols=88 Identities=27% Similarity=0.365 Sum_probs=49.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCee---eeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhh
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFG---VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDD 79 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~---vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~ 79 (542)
|.|+|+.++|||+|+++|.+.. +. ......+.|-++...... ++...+.+.|+.|...... +.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d~~g~~~~~~----~~ 67 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE----FPDNSVPEETSEITIGVDVIVVD------GDRQSLQFWDFGGQEEFYS----QH 67 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS------------SSTTSCEEEEEEEET------TEEEEEEEEEESSSHCHHC----TS
T ss_pred EEEECcCCCCHHHHHHHHhcCC----CcccccccccCCCcEEEEEEEec------CCceEEEEEecCccceecc----cc
Confidence 7899999999999999999864 33 233334444444432221 3344588889998633111 11
Q ss_pred HHHHHHHhhhccEEEcCCCCcchHhhhhH
Q 009154 80 RIFALATVMSSVLIYNLPETIREADISRL 108 (542)
Q Consensus 80 ~IFaLa~LLSS~lIYN~~g~I~e~al~~L 108 (542)
..+ +.--=.-+++|++. +.+.++++
T Consensus 68 ~~~-~~~~d~~ilv~D~s---~~~s~~~~ 92 (119)
T PF08477_consen 68 QFF-LKKADAVILVYDLS---DPESLEYL 92 (119)
T ss_dssp HHH-HHHSCEEEEEEECC---GHHHHHHH
T ss_pred cch-hhcCcEEEEEEcCC---ChHHHHHH
Confidence 222 33333345777764 34455554
No 76
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.54 E-value=0.0049 Score=63.61 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.++++|+.++|||+|+|.|+|..
T Consensus 163 ~~~~~G~sg~GKSTlin~l~~~~ 185 (287)
T cd01854 163 TSVLVGQSGVGKSTLINALLPDL 185 (287)
T ss_pred eEEEECCCCCCHHHHHHHHhchh
Confidence 58899999999999999999863
No 77
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.54 E-value=0.0048 Score=61.70 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=37.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|+.++|||+|+|+|.|.. ..++. ++..++.|...+ .+..+-++||+|+.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~----~~v~~~~~tT~~~~~g~~~~----------~~~~i~l~DtpG~~~ 59 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK----SEVAAYEFTTLTCVPGVLEY----------KGAKIQLLDLPGIIE 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ccccCCCCccccceEEEEEE----------CCeEEEEEECCCccc
Confidence 37899999999999999999863 12221 112234555433 346788999999754
No 78
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.54 E-value=0.005 Score=56.26 Aligned_cols=58 Identities=33% Similarity=0.390 Sum_probs=37.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |... ...|.|.=....- ...++..+.+-++||+|..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~----~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK----FSEQ---YKSTIGVDFKTKT--IEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---CCCceeeEEEEEE--EEECCEEEEEEEEECCChH
Confidence 7899999999999999999753 4221 1223333211111 1123556788899999953
No 79
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0043 Score=62.52 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|||+||.++|||||||.+.|..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999973
No 80
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.49 E-value=0.02 Score=62.01 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=37.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccc----eEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK----GIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~Tk----GIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.|.. ...++. ..+.|. +...| .+..+.++||+|+.+
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~---~~~v~~-~~~~t~d~~~~~~~~----------~~~~~~liDT~G~~~ 61 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKR---DAIVAD-TPGVTRDRIYGEAEW----------LGREFILIDTGGIEP 61 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ceeeCC-CCCCcccceEEEEEE----------CCcEEEEEECCCCCC
Confidence 68999999999999999999863 111222 122332 22222 236789999999876
No 81
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.47 E-value=0.0053 Score=56.86 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |.- ..+.|.|.=.-...+. .++..+.+.+.||+|.
T Consensus 5 i~iiG~~~vGKTsli~~~~~~~----~~~---~~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~ 61 (166)
T cd04122 5 YIIIGDMGVGKSCLLHQFTEKK----FMA---DCPHTIGVEFGTRIIE--VNGQKIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC---CCCcccceeEEEEEEE--ECCEEEEEEEEECCCc
Confidence 7899999999999999998742 531 1233545433222222 2356778999999995
No 82
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.46 E-value=0.004 Score=56.49 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=34.5
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 5 VIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 5 V~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
++|..++|||+|+|++.+.. +.++.. ..+|.....- .+ .. ++..+.++||+|..+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~----~~~~~~-~~~t~~~~~~--~~--~~--~~~~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR----QKVGNW-PGVTVEKKEG--RF--KL--GGKEIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc----ccccCC-CCcccccceE--EE--ee--CCeEEEEEECCCcccc
Confidence 58999999999999999853 333321 1222222210 11 11 2357899999998663
No 83
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=96.44 E-value=0.0051 Score=56.90 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=33.7
Q ss_pred EECCCCCCHHHHHHHHHcCCCCCCeeeeec---CcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 5 VIGPYRSGKSFLLNQLLSLSCDEGFGVGHM---RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 5 V~G~~rtGKSfLLN~Llg~~~~~gF~vg~~---~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
++|+.++|||+|+|.|.+.. +.++.. +...+.|...+ +.+..+.++||+|+..
T Consensus 1 iiG~~~~GKStll~~l~~~~----~~~~~~~~~t~~~~~~~~~~---------~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK----PKVANYPFTTLEPNLGVVEV---------PDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCC----ccccCCCceeecCcceEEEc---------CCCCeEEEEeccccch
Confidence 58999999999999999863 222221 11222332211 1156789999999853
No 84
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.42 E-value=0.0059 Score=55.89 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=36.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++++.. |.- ....|.|.=.....+ ..++....+.++||+|.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~----~~~---~~~~t~~~~~~~~~v--~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKNE----FSE---NQESTIGAAFLTQTV--NLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCC---CCCCccceeEEEEEE--EECCEEEEEEEEeCCch
Confidence 7899999999999999999864 322 113333421111111 12345678899999994
No 85
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.41 E-value=0.0055 Score=54.97 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|+++|+.++|||+|+|+|.+.. |... ...|.|+=... + . ..++.+-+.||+|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~----~~~~---~~~t~~~~~~~-~---~--~~~~~~~~~D~~g~ 54 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ----FSED---TIPTVGFNMRK-V---T--KGNVTLKVWDLGGQ 54 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC----CCcC---ccCCCCcceEE-E---E--ECCEEEEEEECCCC
Confidence 7899999999999999999863 4321 13344543321 1 1 13478899999995
No 86
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.41 E-value=0.0042 Score=66.96 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=40.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC----CCCCCee---eeecCcCccce-EEeeeccccc-------c-cCCCceeEEEeec
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL----SCDEGFG---VGHMRDTKTKG-IWVWGNPVEM-------E-IDGSRTSVFYLDT 65 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~----~~~~gF~---vg~~~~~~TkG-IWmW~~p~~~-------~-~~g~~~~vlllDT 65 (542)
-|+|+||-|||||+|+|++.+. .-.+-+. .....-+...| .-|-..|... . .++-+..|.++||
T Consensus 19 yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDc 98 (492)
T TIGR02836 19 YIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDC 98 (492)
T ss_pred EEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEEEC
Confidence 4899999999999999999997 2111110 00000011111 1122234321 1 2466789999999
Q ss_pred CCcccc
Q 009154 66 EGFESI 71 (542)
Q Consensus 66 EG~~~~ 71 (542)
.|+++.
T Consensus 99 vG~~v~ 104 (492)
T TIGR02836 99 VGYTVK 104 (492)
T ss_pred CCcccC
Confidence 998763
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.39 E-value=0.0066 Score=55.99 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|+|+|+.++|||+|+|++.+.. |.... ..|.|.=....- ...++..+.+-+.||+|..
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~----~~~~~---~~t~~~~~~~~~--~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK----FSNQY---KATIGADFLTKE--VTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcCc---CCccceEEEEEE--EEECCEEEEEEEEeCCChH
Confidence 48999999999999999999753 43221 222232111111 1123455677799999954
No 88
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=96.39 E-value=0.01 Score=60.77 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|.|+|..++|||+|+|.|.+.. ...+++. -.+|++. -| +.. +..+.++||||+-..
T Consensus 120 ~~~~vG~~nvGKSslin~l~~~~---~~~~~~~-~g~T~~~-~~---~~~-----~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 120 RAMIVGIPNVGKSTLINRLAGKK---VAKVGNR-PGVTKGQ-QW---IKL-----SDGLELLDTPGILWP 176 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ccccCCC-CCeecce-EE---EEe-----CCCEEEEECCCcccC
Confidence 48899999999999999999863 2333332 2334442 11 111 124789999998543
No 89
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.0042 Score=65.87 Aligned_cols=66 Identities=27% Similarity=0.342 Sum_probs=42.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC--CCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC--DEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~--~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
+=|+|+-++|||+|+|.|++..- +.-..-.+.....|..|=. .+..+..+|-...+=++||||+||
T Consensus 24 lmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~--~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 24 LMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIES--TKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred EEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeee--eeeeecCCCeEEeeEEeccCCCcc
Confidence 45899999999999999998631 1111111122222444332 233344467788999999999998
No 90
>PRK04213 GTP-binding protein; Provisional
Probab=96.39 E-value=0.005 Score=59.08 Aligned_cols=55 Identities=25% Similarity=0.345 Sum_probs=35.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|+++|..++|||+|+|+|.|.. |.++... ..|.- +.... .. .+.++||+|++..
T Consensus 11 ~i~i~G~~~~GKSsLin~l~~~~----~~~~~~~-~~t~~------~~~~~--~~--~~~l~Dt~G~~~~ 65 (201)
T PRK04213 11 EIVFVGRSNVGKSTLVRELTGKK----VRVGKRP-GVTRK------PNHYD--WG--DFILTDLPGFGFM 65 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CccCCCC-ceeeC------ceEEe--ec--ceEEEeCCccccc
Confidence 58999999999999999999853 5443221 11211 11111 11 4889999998654
No 91
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.38 E-value=0.024 Score=62.50 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|..++|||+|+|+|++.. +...+.....|...-- .++. . .+..+.++||+|+..
T Consensus 213 kI~iiG~~nvGKSSLin~l~~~~----~~~~s~~~gtT~d~~~--~~~~--~--~~~~~~l~DTaG~~~ 271 (472)
T PRK03003 213 RVALVGKPNVGKSSLLNKLAGEE----RSVVDDVAGTTVDPVD--SLIE--L--GGKTWRFVDTAGLRR 271 (472)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----cccccCCCCccCCcce--EEEE--E--CCEEEEEEECCCccc
Confidence 58999999999999999999863 2221212222321110 0111 1 234567899999853
No 92
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.38 E-value=0.0051 Score=58.94 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.+.++|..++|||+|+|.|++..
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhc
Confidence 47899999999999999999863
No 93
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.36 E-value=0.0054 Score=58.68 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=37.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |..+.. ..|.|+=.-...+ ..++....+-++||+|-
T Consensus 3 i~vvG~~~vGKTSli~~~~~~~----~~~~~~--~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 3 VMLLGDSGVGKTCLLVRFKDGA----FLNGNF--IATVGIDFRNKVV--TVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCccCc--CCcccceeEEEEE--EECCEEEEEEEEeCCCc
Confidence 7899999999999999998753 543321 2233322211111 12356678999999994
No 94
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.35 E-value=0.0073 Score=55.99 Aligned_cols=58 Identities=28% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |.-. -..|.|+-....-+. .++..+.+-+.||+|..
T Consensus 4 i~i~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 4 LLIIGNSSVGKTSFLFRYADDS----FTSA---FVSTVGIDFKVKTVF--RNDKRVKLQIWDTAGQE 61 (165)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---CCCceeeEEEEEEEE--ECCEEEEEEEEECCChH
Confidence 7899999999999999999753 5311 123555433222111 23456789999999954
No 95
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=96.33 E-value=0.0065 Score=57.80 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=40.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|++.+.. |..++. ..|.|.=.+...+.. ++....+-+.||.|...
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~----~~~~~~--~~t~~~~~~~~~~~~--~~~~~~l~i~D~~G~~~ 62 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR----FLVGPY--QNTIGAAFVAKRMVV--GERVVTLGIWDTAGSER 62 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----cCCcCc--ccceeeEEEEEEEEE--CCEEEEEEEEECCCchh
Confidence 7899999999999999999753 654332 334454333333322 35667778999999643
No 96
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.33 E-value=0.0069 Score=55.91 Aligned_cols=57 Identities=26% Similarity=0.305 Sum_probs=36.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |.... ..|.|+-.-...+ ..++....+-++||+|.
T Consensus 5 i~i~G~~~vGKSsli~~~~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~~~i~D~~G~ 61 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFADDT----YTESY---ISTIGVDFKIRTI--ELDGKTIKLQIWDTAGQ 61 (166)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCCC---CCccceeEEEEEE--EECCEEEEEEEEECCCc
Confidence 7899999999999999999753 54321 2233432111111 12355678889999994
No 97
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.29 E-value=0.0086 Score=55.52 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=38.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |... ...|.|.-.....+. .++....+.+.||+|.
T Consensus 8 i~vvG~~~~GKTsli~~~~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 8 VILLGDGGVGKSSLMNRYVTNK----FDTQ---LFHTIGVEFLNKDLE--VDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCcC---cCCceeeEEEEEEEE--ECCeEEEEEEEeCCCh
Confidence 7899999999999999998743 4321 123555433332222 2467788899999995
No 98
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=96.23 E-value=0.0095 Score=55.58 Aligned_cols=59 Identities=36% Similarity=0.398 Sum_probs=39.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|+|++++.. |.-. ...|.|+-.-...+. .++....+-++||+|..
T Consensus 4 ki~vvG~~~vGKTsli~~~~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 4 KIIVIGDSNVGKTCLTYRFCAGR----FPER---TEATIGVDFRERTVE--IDGERIKVQLWDTAGQE 62 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCc---cccceeEEEEEEEEE--ECCeEEEEEEEeCCChH
Confidence 38899999999999999998742 4311 233455432222222 23567889999999964
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.22 E-value=0.0081 Score=54.96 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.=.-.. ....++....+.++||+|..
T Consensus 3 i~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTDDT----FDPD---LAATIGVDFKVK--TLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCcc---cCCcccceEEEE--EEEECCEEEEEEEEECCCch
Confidence 7899999999999999999753 4321 122333211000 01112456789999999953
No 100
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.22 E-value=0.0079 Score=55.87 Aligned_cols=57 Identities=32% Similarity=0.331 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|+|++.+.. |.-. ...|.|+-.....+. .++....+.+.||+|.
T Consensus 6 i~vvG~~~~GKSsl~~~~~~~~----f~~~---~~~t~~~~~~~~~~~--~~~~~~~l~l~D~~g~ 62 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSEDS----FNPS---FISTIGIDFKIRTIE--LDGKKIKLQIWDTAGQ 62 (167)
T ss_pred EEEECCCCCCHHHHHHHHhhCc----CCcc---cccCccceEEEEEEE--ECCEEEEEEEEeCCch
Confidence 7899999999999999999753 5321 123444432221121 2355678899999994
No 101
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.22 E-value=0.0095 Score=54.06 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|+|+|+.++|||+|+|++++.. |.- ...+.+ +.-.....+.. .+..+.+.+.||+|.
T Consensus 3 i~i~G~~~~GKStli~~l~~~~----~~~--~~~~~~-~~~~~~~~~~~--~~~~~~~~~~D~~g~ 59 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK----FNE--KHESTT-QASFFQKTVNI--GGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC--CcCCcc-ceeEEEEEEEE--CCEEEEEEEEECCch
Confidence 7899999999999999999753 321 111112 11111111111 245678899999994
No 102
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.20 E-value=0.016 Score=55.40 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+++|..++|||+|+|+|.+.
T Consensus 3 i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 3 VGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred EEEEecCCCCHHHHHHHHHhc
Confidence 799999999999999999973
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=96.20 E-value=0.0093 Score=54.55 Aligned_cols=58 Identities=31% Similarity=0.341 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|+.++|||+|+|++++.. |. ....+.+..... ... ..++..+.+-++||+|...
T Consensus 5 i~i~G~~~~GKtsl~~~~~~~~----~~--~~~~~t~~~~~~--~~~--~~~~~~~~~~i~Dt~G~~~ 62 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQSY----FV--TDYDPTIEDSYT--KQC--EIDGQWAILDILDTAGQEE 62 (164)
T ss_pred EEEECCCCCcHHHHHHHHHhCC----CC--cccCCCccceEE--EEE--EECCEEEEEEEEECCCCcc
Confidence 7899999999999999999753 32 111122221211 111 1235567788999999643
No 104
>PRK03003 GTP-binding protein Der; Reviewed
Probab=96.18 E-value=0.034 Score=61.36 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.+.. ...+.++ ...|...-... .+ ..+..+.++||+|+..
T Consensus 40 ~V~IvG~~nvGKSSL~nrl~~~~---~~~v~~~-~gvT~d~~~~~----~~--~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 40 VVAVVGRPNVGKSTLVNRILGRR---EAVVEDV-PGVTRDRVSYD----AE--WNGRRFTVVDTGGWEP 98 (472)
T ss_pred EEEEEcCCCCCHHHHHHHHhCcC---cccccCC-CCCCEeeEEEE----EE--ECCcEEEEEeCCCcCC
Confidence 58999999999999999999852 2222221 12222211110 01 1234688999999763
No 105
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=96.17 E-value=0.011 Score=64.28 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=41.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|+|+|++..|||+|||.|++.. =.+-.....+|+-+-= +.+. =.++.|.++||-|+-.
T Consensus 219 kvvIiG~PNvGKSSLLNaL~~~d----~AIVTdI~GTTRDvie--e~i~----i~G~pv~l~DTAGiRe 277 (454)
T COG0486 219 KVVIIGRPNVGKSSLLNALLGRD----RAIVTDIAGTTRDVIE--EDIN----LNGIPVRLVDTAGIRE 277 (454)
T ss_pred eEEEECCCCCcHHHHHHHHhcCC----ceEecCCCCCccceEE--EEEE----ECCEEEEEEecCCccc
Confidence 37899999999999999999974 2333334445555431 1111 2478899999999864
No 106
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.15 E-value=0.011 Score=54.72 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=37.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccce--EEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG--IWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkG--IWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|..++|||+|++++.+.. |.-. ...|.| ++.+... .++....+-+.||+|..
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~----~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG----YEPQ---QLSTYALTLYKHNAK----FEGKTILVDFWDTAGQE 60 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCCC---cCCceeeEEEEEEEE----ECCEEEEEEEEeCCCch
Confidence 7899999999999999998742 5321 122333 3333222 23567788899999954
No 107
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=96.13 E-value=0.0046 Score=59.17 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee---------eeec----CcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG---------VGHM----RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~---------vg~~----~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
.|+|+|+..+|||+|++.|++......-. +... ....|..+...... .+.....+.++||||.
T Consensus 5 ~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~----~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 5 NIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE----KNENNRKITLIDTPGH 80 (188)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE----BTESSEEEEEEEESSS
T ss_pred EEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc----ccccccceeecccccc
Confidence 69999999999999999999753110000 0000 01122222222111 1235788999999996
Q ss_pred ccccCcchhhhHHHHHHHhhhcc--EEEcCCCCcchHhhhhHHHHHH
Q 009154 69 ESIGKSNVYDDRIFALATVMSSV--LIYNLPETIREADISRLSFAVE 113 (542)
Q Consensus 69 ~~~e~~~~~D~~IFaLa~LLSS~--lIYN~~g~I~e~al~~L~~v~e 113 (542)
.+. ....+-++. .+.. +|......++.+..+.+....+
T Consensus 81 ~~f-----~~~~~~~~~--~~D~ailvVda~~g~~~~~~~~l~~~~~ 120 (188)
T PF00009_consen 81 EDF-----IKEMIRGLR--QADIAILVVDANDGIQPQTEEHLKILRE 120 (188)
T ss_dssp HHH-----HHHHHHHHT--TSSEEEEEEETTTBSTHHHHHHHHHHHH
T ss_pred cce-----eecccceec--ccccceeeeecccccccccccccccccc
Confidence 431 123333333 3444 5666666677777777665543
No 108
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.12 E-value=0.009 Score=55.03 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCC-CCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCD-EGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~-~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.... .|-. ......|.|+-.... . .++..+.++||+|...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~~~~~~~--~~~~~~t~~~~~~~~----~--~~~~~~~l~Dt~G~~~ 62 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFSKYKGLP--PSKITPTVGLNIGTI----E--VGNARLKFWDLGGQES 62 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcccccCCc--ccccCCccccceEEE----E--ECCEEEEEEECCCChh
Confidence 689999999999999999874210 0110 001112333322111 1 1357889999999754
No 109
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=96.11 E-value=0.019 Score=55.95 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=57.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------CCeeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD------EGFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~------~gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+|+|...+|||+|.++|++.... .++.+.. ..+...+|+=+-......+ .++..+.++||+|..+
T Consensus 4 ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~--~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 4 NVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE--TANRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec--CCCeEEEEEECcCHHH----
Confidence 4899999999999999999975211 1111111 1111234443332222222 3456789999999743
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
-....+-+++..=.-++|......+..+..+.+.++
T Consensus 78 -~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~ 113 (195)
T cd01884 78 -YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLA 113 (195)
T ss_pred -HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 123345555553344566676666666555555443
No 110
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.11 E-value=0.0088 Score=62.84 Aligned_cols=58 Identities=29% Similarity=0.314 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|.|+|-..+|||+|+|.|+|.. .-.+++.- ..|+|+-- -. -+..+.|+||||.--.+
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~---~~~~s~~P-G~Tk~~q~-i~--------~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKK---VAKTSNRP-GTTKGIQW-IK--------LDDGIYLLDTPGIIPPK 191 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhccc---ceeeCCCC-ceecceEE-EE--------cCCCeEEecCCCcCCCC
Confidence 37899999999999999999973 34444432 56777642 11 12348999999975533
No 111
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.07 E-value=0.0063 Score=58.98 Aligned_cols=35 Identities=31% Similarity=0.512 Sum_probs=28.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeec
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGN 47 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~ 47 (542)
+|+|+||.++|||||||.+.| |. .|..-.||+=++
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG------F~-----~P~~G~i~i~g~ 61 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG------FE-----TPASGEILINGV 61 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh------cc-----CCCCceEEEcCe
Confidence 689999999999999999998 43 355566777543
No 112
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=96.07 E-value=0.012 Score=64.61 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+++|..++|||+|+|.|++.. +..-+.....|..+.... + .. .+..+.++||+|+.+
T Consensus 217 kV~ivG~~nvGKSSLln~L~~~~----~a~v~~~~gtT~d~~~~~--i--~~--~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 217 KVVIAGRPNVGKSSLLNALLGEE----RAIVTDIAGTTRDVIEEH--I--NL--DGIPLRLIDTAGIRE 275 (449)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CcccCCCCCcccccEEEE--E--EE--CCeEEEEEeCCCCCC
Confidence 58999999999999999999853 221111222333322111 1 11 245688999999853
No 113
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.07 E-value=0.011 Score=64.79 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=36.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|+|++.. +..-+...++|.-+-. ..+.. .+..+.++||+|+.+
T Consensus 205 kVvIvG~~nvGKSSLiN~L~~~~----~aivs~~pgtTrd~~~--~~i~~----~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 205 KLAIVGSPNVGKSSLLNALLKQD----RAIVSDIKGTTRDVVE--GDFEL----NGILIKLLDTAGIRE 263 (442)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC----CcccCCCCCcEEEEEE--EEEEE----CCEEEEEeeCCCccc
Confidence 47899999999999999999853 2211122233333221 11111 245678999999854
No 114
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.05 E-value=0.014 Score=54.07 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=35.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|+|+|+.++|||+|+|.|.+.. |.. ...|.|+-. .. .. ..+..+.++||+|..
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~----~~~----~~~t~g~~~--~~--i~--~~~~~~~~~D~~G~~ 69 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASED----ISH----ITPTQGFNI--KT--VQ--SDGFKLNVWDIGGQR 69 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCC----Ccc----cCCCCCcce--EE--EE--ECCEEEEEEECCCCH
Confidence 48999999999999999999852 221 122444211 00 11 124678899999953
No 115
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.03 E-value=0.025 Score=55.17 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|...+|||+|+|+|++.
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~ 22 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYD 22 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 799999999999999999975
No 116
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.03 E-value=0.011 Score=53.85 Aligned_cols=59 Identities=25% Similarity=0.259 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|+.++|||+|+|++.+.. |. +...+.+........ ..++....+.++||+|..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~----~~--~~~~~~~~~~~~~~~----~~~~~~~~~~i~D~~g~~~ 60 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE----FV--EDYEPTKADSYRKKV----VLDGEDVQLNILDTAGQED 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----Cc--cccCCcchhhEEEEE----EECCEEEEEEEEECCChhh
Confidence 37899999999999999999753 22 111222322222111 1245667899999999543
No 117
>PTZ00258 GTP-binding protein; Provisional
Probab=96.01 E-value=0.0098 Score=64.05 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=38.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeee----ecCcCccceEEeeeccccc---cc-CC---CceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG----HMRDTKTKGIWVWGNPVEM---EI-DG---SRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg----~~~~~~TkGIWmW~~p~~~---~~-~g---~~~~vlllDTEG~~ 69 (542)
-|+|+|..++|||+|+|.|.+.. -.++ .|++| ..|+.-+..+-.. .. ++ ....+.++||+|+-
T Consensus 23 kvgIVG~PNvGKSTLfnaLt~~~----~~v~n~pftTi~p-~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 23 KMGIVGLPNVGKSTTFNALCKQQ----VPAENFPFCTIDP-NTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred EEEEECCCCCChHHHHHHHhcCc----ccccCCCCCcccc-eEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 48999999999999999998753 1222 23333 3366443321100 00 01 13458999999985
No 118
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.00 E-value=0.012 Score=54.90 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=39.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+++... |... ...|.|+=+-...+. .++..+.+.+.||+|...
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE----FEKK---YVATLGVEVHPLDFH--TNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCC---CCCceeeEEEEEEEE--ECCEEEEEEEEECCCChh
Confidence 37899999999999999998642 4321 234555433222121 235678899999999754
No 119
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=95.99 E-value=0.011 Score=56.77 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cC-----cCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MR-----DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~-----~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|..++|||+|+|+|++.. ..|.-.. +. ...|.|+=+....... +..+..+.++||+|..+
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~--~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~--~~~~~~~~l~DtpG~~~ 77 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQS--GTFRENEEVEERVMDSNDLERERGITILAKNTAV--TYKDTKINIVDTPGHAD 77 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHc--CCCCccCcccccccccchhHHhcccccccceeEE--EECCEEEEEEECCCcHH
Confidence 58999999999999999999631 2243211 11 1123454433322222 24577899999999754
No 120
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.99 E-value=0.045 Score=63.50 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|+|+|..++|||+|+|+|++..
T Consensus 452 kI~ivG~~nvGKSSLin~l~~~~ 474 (712)
T PRK09518 452 RVALVGRPNVGKSSLLNQLTHEE 474 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 48999999999999999999863
No 121
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=95.98 E-value=0.012 Score=56.72 Aligned_cols=57 Identities=30% Similarity=0.328 Sum_probs=37.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|++.+.. |.- ....|.|+-....- ...+|....+-++||+|.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~~----~~~---~~~~t~~~~~~~~~--~~~~~~~~~l~l~D~~G~ 65 (199)
T cd04110 9 LLIIGDSGVGKSSLLLRFADNT----FSG---SYITTIGVDFKIRT--VEINGERVKLQIWDTAGQ 65 (199)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC---CcCccccceeEEEE--EEECCEEEEEEEEeCCCc
Confidence 7899999999999999999753 421 11334453221111 112355678889999995
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.96 E-value=0.017 Score=54.74 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=34.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|+|+|.+.. |. ..++..+ +.|...+ .+..+.++||+|..
T Consensus 21 ki~ilG~~~~GKStLi~~l~~~~----~~~~~~T~~~-~~~~i~~----------~~~~~~l~D~~G~~ 74 (190)
T cd00879 21 KILFLGLDNAGKTTLLHMLKDDR----LAQHVPTLHP-TSEELTI----------GNIKFKTFDLGGHE 74 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CcccCCccCc-ceEEEEE----------CCEEEEEEECCCCH
Confidence 37999999999999999999753 22 1122222 1222111 24678899999953
No 123
>PLN03118 Rab family protein; Provisional
Probab=95.96 E-value=0.014 Score=56.84 Aligned_cols=57 Identities=32% Similarity=0.298 Sum_probs=37.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|+|++.. |.- ...|.|.-.....+. .++....+.+.||+|..
T Consensus 17 v~ivG~~~vGKTsli~~l~~~~----~~~----~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 17 ILLIGDSGVGKSSLLVSFISSS----VED----LAPTIGVDFKIKQLT--VGGKRLKLTIWDTAGQE 73 (211)
T ss_pred EEEECcCCCCHHHHHHHHHhCC----CCC----cCCCceeEEEEEEEE--ECCEEEEEEEEECCCch
Confidence 7899999999999999999753 421 123444422222121 23556789999999953
No 124
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=95.92 E-value=0.018 Score=54.92 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|+.++|||+|+|++.+.. |. +.+|..+ |.+...+ .+..+.++||+|...
T Consensus 19 ~i~ivG~~~~GKTsli~~l~~~~----~~~~~~t~~~-~~~~~~~----------~~~~~~~~D~~G~~~ 73 (184)
T smart00178 19 KILFLGLDNAGKTTLLHMLKNDR----LAQHQPTQHP-TSEELAI----------GNIKFTTFDLGGHQQ 73 (184)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CcccCCcccc-ceEEEEE----------CCEEEEEEECCCCHH
Confidence 47899999999999999999752 42 2233322 2222211 356788999999643
No 125
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=95.92 E-value=0.015 Score=53.91 Aligned_cols=55 Identities=25% Similarity=0.248 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeee--ecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVG--HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg--~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|++.+.. |.-. ++....|..+ ..++.++.+-++||+|.+.
T Consensus 3 v~ivG~~~vGKTsl~~~l~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 3 IVLIGDEGVGKSSLIMSLVSEE----FPENVPRVLPEITIPA---------DVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred EEEECCCCCCHHHHHHHHHhCc----CCccCCCcccceEeee---------eecCCeEEEEEEeCCCchh
Confidence 7899999999999999998753 4211 1111112111 1235678899999999643
No 126
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=95.90 E-value=0.014 Score=54.73 Aligned_cols=54 Identities=30% Similarity=0.250 Sum_probs=35.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeee--eecC-cCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGV--GHMR-DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~v--g~~~-~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|+.++|||+|+|++.+.. |.. .++. ...++.+.. ++.+..+.++||+|..
T Consensus 4 v~l~G~~g~GKTtl~~~~~~~~----~~~~~~~t~~~~~~~~~~~---------~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVEGH----FVESYYPTIENTFSKIIRY---------KGQDYHLEIVDTAGQD 60 (180)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CccccCcchhhhEEEEEEE---------CCEEEEEEEEECCChH
Confidence 7899999999999999999753 421 1111 112333321 2445678899999964
No 127
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.89 E-value=0.016 Score=52.64 Aligned_cols=57 Identities=35% Similarity=0.315 Sum_probs=35.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+|++.+.. |.-. ..+ |.|-- +...+. .++....+-+.||+|..
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~----~~~~--~~~-t~~~~-~~~~~~--~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH----FVDE--YDP-TIEDS-YRKQVV--IDGETCLLDILDTAGQE 60 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CcCC--cCC-cchhe-EEEEEE--ECCEEEEEEEEECCCCc
Confidence 7899999999999999999753 4211 112 22211 111111 23445667789999953
No 128
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.89 E-value=0.016 Score=53.14 Aligned_cols=59 Identities=31% Similarity=0.342 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|++.+.. |.-.. .+.+.-.. .... ..++....+-++||+|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~----~~~~~--~~t~~~~~--~~~~--~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH----FVDDY--DPTIEDSY--RKQI--EIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc----CCccc--CCchhhhE--EEEE--EECCEEEEEEEEECCCccc
Confidence 37899999999999999999753 43211 11111111 1111 1234567888999999643
No 129
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.88 E-value=0.022 Score=58.55 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=38.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeeccccc---cc-CCC---ceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEM---EI-DGS---RTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~---~~-~g~---~~~vlllDTEG~~ 69 (542)
|+|+|...+|||+|+|.|.+.....+=--+.|++| ..|+.-+..+... .. ++. ...+.++||+|+-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p-~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~ 73 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEP-NVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLV 73 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhc-eeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcC
Confidence 68999999999999999998642110001123333 2366654332100 00 111 1358899999985
No 130
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.86 E-value=0.018 Score=54.74 Aligned_cols=58 Identities=29% Similarity=0.340 Sum_probs=38.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |.. ....|.|.-.-...+ ..++..+.+-+.||+|..
T Consensus 3 i~v~G~~~vGKSsli~~~~~~~----~~~---~~~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 3 VVIIGDYGVGKSSLLKRFTEDE----FSE---STKSTIGVDFKIKTV--YIENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC---CCCCceeeEEEEEEE--EECCEEEEEEEEECCCcH
Confidence 7899999999999999999753 532 112344432211112 123556788899999954
No 131
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.86 E-value=0.014 Score=53.31 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|++.+.. |.- ...+.+..... ..+ ..++....+-+.||+|...
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~----~~~--~~~~t~~~~~~--~~~--~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQGI----FVE--KYDPTIEDSYR--KQI--EVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCc--ccCCchhhhEE--EEE--EECCEEEEEEEEECCCccc
Confidence 37899999999999999999642 431 11222222221 111 1245567788999999643
No 132
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=95.84 E-value=0.02 Score=56.07 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=40.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|..++|||+|+|+|.+.. |.- ....|.|+-.....+... ++..+.+.+.||+|.
T Consensus 3 i~ivG~~~vGKSsLi~~l~~~~----~~~---~~~~T~~~d~~~~~i~~~-~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 3 IVVLGDGAVGKTSLCRRFAKEG----FGK---SYKQTIGLDFFSKRVTLP-GNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEECcCCCCHHHHHHHHhcCC----CCC---CCCCceeEEEEEEEEEeC-CCCEEEEEEEECCCc
Confidence 7899999999999999998753 532 224466765544333322 224678899999994
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.82 E-value=0.018 Score=52.16 Aligned_cols=58 Identities=26% Similarity=0.329 Sum_probs=35.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|++++.. |.-. ..+.+.-... .. ...++....+-++|++|...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~----~~~~--~~~~~~~~~~--~~--~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT----FVEE--YDPTIEDSYR--KT--IVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCcC--cCCChhHeEE--EE--EEECCEEEEEEEEECCChHH
Confidence 7899999999999999999753 3211 1122221111 11 11234457788999999643
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.82 E-value=0.019 Score=54.03 Aligned_cols=54 Identities=22% Similarity=0.197 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|+|+|.+.. |. . . ..|.|.-+- .+ ..++..+.+.||+|..
T Consensus 17 kv~~~G~~~~GKTsl~~~l~~~~----~~-~-~--~~t~~~~~~--~~----~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 17 KVIIVGLDNAGKTTILYQFLLGE----VV-H-T--SPTIGSNVE--EI----VYKNIRFLMWDIGGQE 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHccCC----CC-C-c--CCccccceE--EE----EECCeEEEEEECCCCH
Confidence 47899999999999999998642 32 1 1 223332211 11 1236789999999964
No 135
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.82 E-value=0.037 Score=56.18 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|..++|||+|+|+|++.
T Consensus 2 i~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 2 IALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 136
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.82 E-value=0.018 Score=52.44 Aligned_cols=55 Identities=27% Similarity=0.226 Sum_probs=34.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+|+|.+.. +.... -..|.|.-.-. . ...+..+-++||+|..
T Consensus 2 i~~vG~~~~GKTsl~~~l~~~~----~~~~~--~~~t~g~~~~~----~--~~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKPEN----AQSQI--IVPTVGFNVES----F--EKGNLSFTAFDMSGQG 56 (162)
T ss_pred EEEECCCCCCHHHHHHHHcccC----CCcce--ecCccccceEE----E--EECCEEEEEEECCCCH
Confidence 6799999999999999998742 21111 12233421110 0 1246788999999964
No 137
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.79 E-value=0.019 Score=56.22 Aligned_cols=59 Identities=32% Similarity=0.414 Sum_probs=39.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |.- ....|.|+-.....+... ++..+.+-+.||+|..
T Consensus 5 IvvvG~~~vGKTsLi~~l~~~~----~~~---~~~~ti~~d~~~~~i~~~-~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 5 LIVIGDSTVGKSSLLKRFTEGR----FAE---VSDPTVGVDFFSRLIEIE-PGVRIKLQLWDTAGQE 63 (211)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCC---CCCceeceEEEEEEEEEC-CCCEEEEEEEeCCcch
Confidence 7899999999999999999753 432 123455543332222211 3456789999999953
No 138
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.76 E-value=0.023 Score=53.19 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccc--------cCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEME--------IDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~--------~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|+|++.+.. |.- ....|.|+-.-...+... .++..+.+-+.||+|.
T Consensus 7 i~ivG~~~vGKTsli~~~~~~~----~~~---~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 73 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTDNK----FNP---KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ 73 (180)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCc---cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh
Confidence 6899999999999999998753 421 112344443322222111 1245678899999994
No 139
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.72 E-value=0.02 Score=53.07 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|+.++|||+|+|++++.. |.... .|.+.... ...+ ..++....+.+.||+|...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~----f~~~~--~~t~~~~~--~~~~--~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT----FRESY--IPTIEDTY--RQVI--SCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCCc--CCcchheE--EEEE--EECCEEEEEEEEECCCCCc
Confidence 47899999999999999999753 53211 12111111 1111 1124457788999999653
No 140
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.69 E-value=0.022 Score=52.73 Aligned_cols=59 Identities=27% Similarity=0.373 Sum_probs=39.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|++++.+.. |.-. ...|.|.=.....+. .++....+-+.||.|..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE----FHSS---HISTIGVDFKMKTIE--VDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCCC---CCCceeeEEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 47899999999999999998753 6421 133555432222222 23556788899999853
No 141
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.69 E-value=0.023 Score=52.31 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=37.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|+.++|||+|+|+|.+.. |.... .+.+..... ... ..++....+-++||+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~----~~~~~--~~~~~~~~~--~~~--~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK----FPTEY--VPTVFDNYS--ATV--TVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCCC--CCceeeeeE--EEE--EECCEEEEEEEEeCCCccc
Confidence 47899999999999999999753 42111 111111111 111 1235677899999999754
No 142
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.68 E-value=0.019 Score=61.28 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=38.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC--CCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC--DEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~--~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|..++|||+|+|.|++... .+...+++. ..+|.++-. ++. +..+.++||||+..
T Consensus 156 ~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~~~----~~~-----~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDLIE----IPL-----DDGHSLYDTPGIIN 216 (360)
T ss_pred eEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeEEE----EEe-----CCCCEEEECCCCCC
Confidence 478999999999999999998531 112344432 244555331 111 12357999999875
No 143
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.68 E-value=0.018 Score=53.50 Aligned_cols=58 Identities=34% Similarity=0.403 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|+.++|||+|+|++.+.. |. .+..+.+...+ ...+. .++..+.+-++||+|...
T Consensus 4 i~liG~~~~GKTsli~~~~~~~----~~--~~~~~t~~~~~--~~~~~--~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV----FI--ESYDPTIEDSY--RKQVE--IDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CC--cccCCcchheE--EEEEE--ECCEEEEEEEEeCCCccc
Confidence 7899999999999999998643 42 22233333232 22222 235567888999999654
No 144
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.65 E-value=0.02 Score=53.26 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=37.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|++++.+.. |.- ...+++...+. ..+ ..++....+.+.||.|...
T Consensus 4 i~iiG~~~~GKTsl~~~~~~~~----~~~--~~~~t~~~~~~--~~~--~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 4 LVIVGDGACGKTCLLIVFSKDQ----FPE--VYVPTVFENYV--ADI--EVDGKQVELALWDTAGQED 61 (175)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC--CCCCccccceE--EEE--EECCEEEEEEEEeCCCchh
Confidence 7899999999999999999753 431 11122211111 112 2245667899999999654
No 145
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.63 E-value=0.028 Score=54.19 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccC-CCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEID-GSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~-g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |.- ....|.|.-.-...+ ..+ +..+.+.+.||+|..
T Consensus 3 ivivG~~~vGKTsli~~l~~~~----~~~---~~~~t~~~d~~~~~v--~~~~~~~~~l~l~Dt~G~~ 61 (201)
T cd04107 3 VLVIGDLGVGKTSIIKRYVHGI----FSQ---HYKATIGVDFALKVI--EWDPNTVVRLQLWDIAGQE 61 (201)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCC---CCCCceeEEEEEEEE--EECCCCEEEEEEEECCCch
Confidence 7899999999999999999753 421 123455542211111 123 567889999999963
No 146
>CHL00071 tufA elongation factor Tu
Probab=95.62 E-value=0.049 Score=58.98 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=57.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC----CCCee--ee-ecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC----DEGFG--VG-HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~----~~gF~--vg-~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+++|...+|||+|+|+|++... ..++. .. .+.+...+|+=+=......+ .++..+.++||||..+
T Consensus 14 ~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~--~~~~~~~~iDtPGh~~---- 87 (409)
T CHL00071 14 NIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE--TENRHYAHVDCPGHAD---- 87 (409)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc--cCCeEEEEEECCChHH----
Confidence 489999999999999999997521 11111 10 11111224444332222222 2456788999999532
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
-....+.+++..=.-++|......+.+++.+.+.++
T Consensus 88 -~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~ 123 (409)
T CHL00071 88 -YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLA 123 (409)
T ss_pred -HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 123445555543333466666666776666666544
No 147
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.61 E-value=0.027 Score=51.40 Aligned_cols=54 Identities=26% Similarity=0.217 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+|++.+.. |. .+ ..|.|+=.- .+. .+.+..+.+.||+|..
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~----~~--~~--~~t~~~~~~--~~~---~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE----LV--TT--IPTVGFNVE--MLQ---LEKHLSLTVWDVGGQE 55 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----cc--cc--cCccCcceE--EEE---eCCceEEEEEECCCCH
Confidence 6899999999999999999863 32 11 223442111 111 1245789999999964
No 148
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=95.60 E-value=0.069 Score=54.74 Aligned_cols=94 Identities=14% Similarity=0.201 Sum_probs=50.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeec----------CcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM----------RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~----------~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
|+|+|..++|||+|.|+|+...... -..|.. .+-..+|+=+-....... ..+..+.++||+|..+..
T Consensus 2 v~ivGh~~~GKTtL~~~Ll~~~g~~-~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~--~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 2 IGIIAHIDAGKTTTTERILYYTGRI-HKIGEVHGGGATMDFMEQERERGITIQSAATTCF--WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCC-cccccccCCccccCCCccccCCCcCeeccEEEEE--ECCEEEEEEECCCcHHHH
Confidence 7999999999999999998542100 011110 111233433322222111 246788999999965421
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHh
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREAD 104 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~a 104 (542)
....-++...=.-++|......++.++
T Consensus 79 -----~~~~~~l~~aD~ailVVDa~~g~~~~t 105 (270)
T cd01886 79 -----IEVERSLRVLDGAVAVFDAVAGVEPQT 105 (270)
T ss_pred -----HHHHHHHHHcCEEEEEEECCCCCCHHH
Confidence 123334555334456666665555444
No 149
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=95.59 E-value=0.062 Score=53.94 Aligned_cols=93 Identities=20% Similarity=0.258 Sum_probs=51.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC--------CCCeeeeecC-cCccceEEeeecccccccCCCceeEEEeecCCcccccC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC--------DEGFGVGHMR-DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK 73 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~--------~~gF~vg~~~-~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~ 73 (542)
|+|+|..++|||+|.|+|+.... ..|-.+.... ...++|+=+-...... ..++..+.++||+|..+..
T Consensus 2 i~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~--~~~~~~i~liDTPG~~~f~- 78 (237)
T cd04168 2 IGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF--QWEDTKVNLIDTPGHMDFI- 78 (237)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE--EECCEEEEEEeCCCccchH-
Confidence 78999999999999999997521 0111111100 0112332221111111 1356789999999986421
Q ss_pred cchhhhHHHHHHHhhhccEEEcCCCCcch
Q 009154 74 SNVYDDRIFALATVMSSVLIYNLPETIRE 102 (542)
Q Consensus 74 ~~~~D~~IFaLa~LLSS~lIYN~~g~I~e 102 (542)
....-++...=.-++|+.....+..
T Consensus 79 ----~~~~~~l~~aD~~IlVvd~~~g~~~ 103 (237)
T cd04168 79 ----AEVERSLSVLDGAILVISAVEGVQA 103 (237)
T ss_pred ----HHHHHHHHHhCeEEEEEeCCCCCCH
Confidence 1223345554455688887766543
No 150
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.59 E-value=0.012 Score=58.90 Aligned_cols=23 Identities=48% Similarity=0.681 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+|+||.+||||||||.|-|..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 69999999999999999998863
No 151
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.54 E-value=0.013 Score=60.86 Aligned_cols=58 Identities=34% Similarity=0.486 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee-------cCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH-------MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~-------~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
+..++|+.+.|||+|+|+|.+.. ..++|. +.+. |+-.=|..-| +. =+++||||+.+.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~---~~~t~eIS~~~~rGkHT-Tt~~~l~~l~------~g---G~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL---NQKTGEISEKLGRGRHT-TTHVELFPLP------GG---GWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh---hhhhhhhcccCCCCCCc-cceEEEEEcC------CC---CEEEeCCCCCccC
Confidence 56889999999999999999742 233322 2222 3333333322 11 2578999997644
No 152
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.53 E-value=0.025 Score=52.12 Aligned_cols=59 Identities=31% Similarity=0.376 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|++.+.+.. |.-+. ..|.|+=.-...+ ..++....+.+.||+|..
T Consensus 9 ~v~v~G~~~~GKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 9 KIVLIGNAGVGKTCLVRRFTQGL----FPPGQ---GATIGVDFMIKTV--EIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCCC---CCceeeEEEEEEE--EECCEEEEEEEEECCCcH
Confidence 48999999999999999998532 32111 2222321111111 123455778899999953
No 153
>PLN03110 Rab GTPase; Provisional
Probab=95.52 E-value=0.024 Score=55.72 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=39.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+++|.+.. |... ...|.|+=.....+.. ++..+.+-+.||.|.
T Consensus 15 i~ivG~~~vGKStLi~~l~~~~----~~~~---~~~t~g~~~~~~~v~~--~~~~~~l~l~Dt~G~ 71 (216)
T PLN03110 15 IVLIGDSGVGKSNILSRFTRNE----FCLE---SKSTIGVEFATRTLQV--EGKTVKAQIWDTAGQ 71 (216)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---CCCceeEEEEEEEEEE--CCEEEEEEEEECCCc
Confidence 7899999999999999999753 5321 2345665443333332 356678889999994
No 154
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=95.51 E-value=0.023 Score=60.09 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|...+|||+|||.|.+.. -.+++ |..| +.|+..+. ....+.+.||+|+.
T Consensus 161 VglVG~PNaGKSTLln~ls~a~----~~va~ypfTT~~p-~~G~v~~~---------~~~~~~i~D~PGli 217 (335)
T PRK12299 161 VGLVGLPNAGKSTLISAVSAAK----PKIADYPFTTLHP-NLGVVRVD---------DYKSFVIADIPGLI 217 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHcCC----CccCCCCCceeCc-eEEEEEeC---------CCcEEEEEeCCCcc
Confidence 7999999999999999998742 12221 2222 34544331 34568999999984
No 155
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=95.51 E-value=0.022 Score=52.56 Aligned_cols=58 Identities=33% Similarity=0.491 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|++++++.. |. + .-.+.+..+.. .. ...++..+.+-++||+|...
T Consensus 2 i~vvG~~~~GKtsli~~~~~~~----~~-~-~~~~t~~~~~~--~~--~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLTKR----FI-G-EYDPNLESLYS--RQ--VTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred EEEECCCCCcHHHHHHHHHhCc----cc-c-ccCCChHHhce--EE--EEECCEEEEEEEEECCCCcc
Confidence 7899999999999999998642 42 1 11122211111 11 11235667888999999763
No 156
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=95.49 E-value=0.033 Score=59.53 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=39.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeee----ecCcCccceEEeeeccccc---ccCCC----ceeEEEeecCCcc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG----HMRDTKTKGIWVWGNPVEM---EIDGS----RTSVFYLDTEGFE 69 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg----~~~~~~TkGIWmW~~p~~~---~~~g~----~~~vlllDTEG~~ 69 (542)
+-|+|+|...+|||+|+|.|.+.. -.++ .|++| ..|+.-...+... +...+ ...+.++||+|+-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~----~~v~nypftTi~p-~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~ 77 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG----AEAANYPFCTIEP-NVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLV 77 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC----Ceecccccccccc-eEEEEEeccccchhhHHhcCCccccCceEEEEECCCCC
Confidence 358999999999999999999863 1222 23333 3455544332100 00011 1358999999985
No 157
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.48 E-value=0.048 Score=55.75 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|..++|||+|+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5899999999999999999964
No 158
>PRK13796 GTPase YqeH; Provisional
Probab=95.48 E-value=0.021 Score=60.96 Aligned_cols=59 Identities=20% Similarity=0.301 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC--CCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD--EGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~--~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..+.|||+|+|.|++.... +.-.+++. ..+|.++-. ++.. .+ ..++||||+..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~-pGTT~~~~~----~~l~---~~--~~l~DTPGi~~ 222 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRF-PGTTLDKIE----IPLD---DG--SFLYDTPGIIH 222 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhccCccceEEecCC-CCccceeEE----EEcC---CC--cEEEECCCccc
Confidence 3789999999999999999975211 11223332 234555321 1111 11 47999999853
No 159
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.48 E-value=0.027 Score=52.27 Aligned_cols=58 Identities=22% Similarity=0.207 Sum_probs=36.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|++.+.. |.-. ..+.+...+ ...+ ..++....+-++||+|...
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~~----~~~~--~~~t~~~~~--~~~~--~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYANDA----FPEE--YVPTVFDHY--AVSV--TVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCCC--CCCceeeee--EEEE--EECCEEEEEEEEeCCCccc
Confidence 7899999999999999998753 5311 112222222 1122 2234556677999999654
No 160
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=95.44 E-value=0.031 Score=52.49 Aligned_cols=58 Identities=29% Similarity=0.301 Sum_probs=38.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|..++|||+|+|++++.. |.- ....|.|.=....-+ ..+|..+.+-+.||+|..
T Consensus 3 i~ivG~~~vGKTsli~~~~~~~----f~~---~~~~t~~~~~~~~~~--~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 3 VIVVGDLSVGKTCLINRFCKDV----FDK---NYKATIGVDFEMERF--EILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC---CCCCceeeEEEEEEE--EECCEEEEEEEEeCCChH
Confidence 6799999999999999999753 531 113355543322211 224567789999999964
No 161
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=95.43 E-value=0.032 Score=51.52 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
.+.++|..++|||+|+|+|.+.. ...++++. ..|+.+-+-. .+..+.++||+|+
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~~~---~~~~~~~~-~~t~~~~~~~---------~~~~~~~~DtpGi 156 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRH---SASTSPSP-GYTKGEQLVK---------ITSKIYLLDTPGV 156 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---ccccCCCC-CeeeeeEEEE---------cCCCEEEEECcCC
Confidence 46899999999999999999742 34444433 2344432111 1225889999995
No 162
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=95.37 E-value=0.022 Score=51.25 Aligned_cols=21 Identities=33% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+++|..++|||+|+|+|.+.
T Consensus 3 v~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 3 IMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred EEEECCCCCCHHHHHHHHcCC
Confidence 789999999999999999975
No 163
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=95.31 E-value=0.022 Score=66.46 Aligned_cols=56 Identities=30% Similarity=0.400 Sum_probs=39.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec----CcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM----RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~----~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|+++|..++|||+|.|+|.|.. +.+|+. ++ ...|... ..+..+-++||||..+..
T Consensus 5 ~IaLvG~pNvGKSTLfN~Ltg~~----~~vgn~pGvTve-~k~g~~~----------~~~~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 5 TIGLIGNPNSGKTTLFNQLTGAR----QRVGNWAGVTVE-RKEGQFS----------TTDHQVTLVDLPGTYSLT 64 (772)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CccCCCCCceEe-eEEEEEE----------cCceEEEEEECCCccccc
Confidence 58999999999999999999864 344432 21 1233322 346678999999987754
No 164
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=95.31 E-value=0.031 Score=52.23 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=35.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|+|+|.+.. +. . ...|.|.-.. ++.. .+..+.+.||+|..
T Consensus 16 kv~ivG~~~~GKTsL~~~l~~~~----~~---~-~~~t~g~~~~--~~~~----~~~~l~l~D~~G~~ 69 (173)
T cd04154 16 RILILGLDNAGKTTILKKLLGED----ID---T-ISPTLGFQIK--TLEY----EGYKLNIWDVGGQK 69 (173)
T ss_pred EEEEECCCCCCHHHHHHHHccCC----CC---C-cCCccccceE--EEEE----CCEEEEEEECCCCH
Confidence 47899999999999999999752 32 1 1235553221 1111 25778999999964
No 165
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=95.30 E-value=0.04 Score=50.24 Aligned_cols=53 Identities=23% Similarity=0.205 Sum_probs=35.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+|+|+.++|||+|+|++.+.. +. ....|.|+=. ... ...+..+-+.||+|..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~----~~----~~~~t~~~~~----~~~--~~~~~~~~i~D~~G~~ 54 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE----VV----TTIPTIGFNV----ETV--EYKNVSFTVWDVGGQD 54 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----CC----CCCCCcCcce----EEE--EECCEEEEEEECCCCh
Confidence 7899999999999999999863 21 1122444321 111 1235789999999964
No 166
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=95.24 E-value=0.034 Score=51.63 Aligned_cols=58 Identities=26% Similarity=0.203 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|++.+.. |.... .+ |.+--.. .. ...++....+.+.||+|...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~----~~~~~--~~-~~~~~~~-~~--~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA----FPEDY--VP-TVFENYS-AD--VEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC----CCCCC--CC-cEEeeee-EE--EEECCEEEEEEEEECCCCcc
Confidence 5799999999999999999753 53211 11 2111111 11 11245667899999999643
No 167
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.24 E-value=0.09 Score=61.03 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.|.. +...+.....|.-. .....+ -.+..+.++||+|+..
T Consensus 277 ~V~IvG~~nvGKSSL~n~l~~~~----~~iv~~~pGvT~d~----~~~~~~--~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 277 VVAIVGRPNVGKSTLVNRILGRR----EAVVEDTPGVTRDR----VSYDAE--WAGTDFKLVDTGGWEA 335 (712)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----ceeecCCCCeeEEE----EEEEEE--ECCEEEEEEeCCCcCC
Confidence 59999999999999999999852 22222111222211 101111 1245688899999864
No 168
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.22 E-value=0.032 Score=51.36 Aligned_cols=58 Identities=29% Similarity=0.350 Sum_probs=36.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|..++|||+|+|++... .|. +...+.+.... . .. ...++....+-+.||+|..
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~----~~~--~~~~~t~~~~~-~-~~--~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG----IFV--EKYDPTIEDSY-R-KQ--VEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC----CCC--cccCCcchheE-E-EE--EEECCEEEEEEEEECCCcc
Confidence 4789999999999999999853 242 11122222211 1 11 1223556777899999964
No 169
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=95.21 E-value=0.099 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|..++|||+|+++|++.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999999975
No 170
>COG1160 Predicted GTPases [General function prediction only]
Probab=95.17 E-value=0.071 Score=57.97 Aligned_cols=102 Identities=25% Similarity=0.268 Sum_probs=57.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccC---cch-h
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK---SNV-Y 77 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~---~~~-~ 77 (542)
-|+|+|....|||+|+|+|+|..+ .+-+....+|.--- ..++. -.+..+.++||-|+---.+ +.+ +
T Consensus 180 kiaiiGrPNvGKSsLiN~ilgeeR----~Iv~~~aGTTRD~I--~~~~e----~~~~~~~liDTAGiRrk~ki~e~~E~~ 249 (444)
T COG1160 180 KIAIIGRPNVGKSSLINAILGEER----VIVSDIAGTTRDSI--DIEFE----RDGRKYVLIDTAGIRRKGKITESVEKY 249 (444)
T ss_pred EEEEEeCCCCCchHHHHHhccCce----EEecCCCCccccce--eeeEE----ECCeEEEEEECCCCCcccccccceEEE
Confidence 389999999999999999999742 12222222232111 11111 1355688899999843111 111 1
Q ss_pred h--hHHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHH
Q 009154 78 D--DRIFALATVMSSVLIYNLPETIREADISRLSFAVE 113 (542)
Q Consensus 78 D--~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~e 113 (542)
. ..+=|+.-.=...+|.+-...+.++|..-+.++.+
T Consensus 250 Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~ 287 (444)
T COG1160 250 SVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEE 287 (444)
T ss_pred eehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHH
Confidence 0 12222222112335667777788888887777766
No 171
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=95.15 E-value=0.044 Score=51.71 Aligned_cols=59 Identities=24% Similarity=0.115 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|++.+.. |.-. ...|.|.-... .+.. .++..+.+.+.||+|..
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~----~~~~---~~~t~~~~~~~-~i~~-~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGK----FPEE---YVPTVFENYVT-NIQG-PNGKIIELALWDTAGQE 60 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc----CCCC---CCCeeeeeeEE-EEEe-cCCcEEEEEEEECCCch
Confidence 48899999999999999999753 5311 11233322111 1111 12556789999999954
No 172
>PLN03108 Rab family protein; Provisional
Probab=95.14 E-value=0.037 Score=54.06 Aligned_cols=58 Identities=31% Similarity=0.305 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|+|.+.. |...+ ..|.|.=.....+. .++..+.+-+.||.|..
T Consensus 9 ivivG~~gvGKStLi~~l~~~~----~~~~~---~~ti~~~~~~~~i~--~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 9 YIIIGDTGVGKSCLLLQFTDKR----FQPVH---DLTIGVEFGARMIT--IDNKPIKLQIWDTAGQE 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCCCC---CCCccceEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 7899999999999999999753 43211 12333221111111 23456778899999953
No 173
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=95.12 E-value=0.039 Score=54.82 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=34.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccce-EEeeecccccccCCCceeEEEeecCC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEMEIDGSRTSVFYLDTEG 67 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkG-IWmW~~p~~~~~~g~~~~vlllDTEG 67 (542)
.+|+|+|+.++|||+|+|.|.+... . .+. ....| +.++. +.+..+.++||+|
T Consensus 40 ~~i~ivG~~~~GKstl~~~l~~~~~--~----~~~-~~~~g~i~i~~--------~~~~~i~~vDtPg 92 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIKSLVKNYT--K----QNI-SDIKGPITVVT--------GKKRRLTFIECPN 92 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc--c----Ccc-ccccccEEEEe--------cCCceEEEEeCCc
Confidence 3799999999999999999998521 1 111 12333 33332 2356788999997
No 174
>CHL00189 infB translation initiation factor 2; Provisional
Probab=95.11 E-value=0.079 Score=61.53 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=54.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhH
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR 80 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~ 80 (542)
.+|+|+|...+|||+|+|+|.+.. |..+. ....|..+-....++. .++.+..+.|+||+|..+. ...+
T Consensus 245 p~V~IvGhvdvGKTSLld~L~~~~----~~~~e-~~GiTq~i~~~~v~~~--~~~~~~kItfiDTPGhe~F-----~~mr 312 (742)
T CHL00189 245 PIVTILGHVDHGKTTLLDKIRKTQ----IAQKE-AGGITQKIGAYEVEFE--YKDENQKIVFLDTPGHEAF-----SSMR 312 (742)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc----Ccccc-CCccccccceEEEEEE--ecCCceEEEEEECCcHHHH-----HHHH
Confidence 379999999999999999998753 32211 1112222222221211 1245688999999996432 1223
Q ss_pred HHHHHHhhhccEEEcCCCCcchHhhhhHH
Q 009154 81 IFALATVMSSVLIYNLPETIREADISRLS 109 (542)
Q Consensus 81 IFaLa~LLSS~lIYN~~g~I~e~al~~L~ 109 (542)
.-++...=.-++|+.....+..+..+.+.
T Consensus 313 ~rg~~~aDiaILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 313 SRGANVTDIAILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred HHHHHHCCEEEEEEECcCCCChhhHHHHH
Confidence 22333322245677766555555555554
No 175
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.10 E-value=0.033 Score=50.97 Aligned_cols=58 Identities=33% Similarity=0.424 Sum_probs=41.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|++++.+.. |.- ....|.|+=....++.. ++..+.+-+.||.|..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~----~~~---~~~~t~~~~~~~~~~~~--~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE----FPE---NYIPTIGIDSYSKEVSI--DGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS----TTS---SSETTSSEEEEEEEEEE--TTEEEEEEEEEETTSG
T ss_pred EEEECCCCCCHHHHHHHHHhhc----ccc---ccccccccccccccccc--cccccccccccccccc
Confidence 6899999999999999999753 531 12335566555444443 3677889999999853
No 176
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=94.96 E-value=0.04 Score=61.18 Aligned_cols=52 Identities=19% Similarity=0.183 Sum_probs=35.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|..++|||+|+|.|.+.. ..+++ |..| ..|+..+ .+..+.+.||+|+.
T Consensus 162 V~LVG~PNAGKSTLln~Ls~ak----pkIadypfTTl~P-~lGvv~~----------~~~~f~laDtPGli 217 (500)
T PRK12296 162 VGLVGFPSAGKSSLISALSAAK----PKIADYPFTTLVP-NLGVVQA----------GDTRFTVADVPGLI 217 (500)
T ss_pred EEEEEcCCCCHHHHHHHHhcCC----ccccccCcccccc-eEEEEEE----------CCeEEEEEECCCCc
Confidence 8999999999999999999753 23322 2222 2333322 34678999999984
No 177
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=94.94 E-value=0.045 Score=57.67 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=35.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|...+|||+|+|+|.+.. ..+++ |+..-+-|+.-+ +....+.+.||+|+.
T Consensus 160 V~lvG~pnaGKSTLl~~lt~~~----~~va~y~fTT~~p~ig~v~~---------~~~~~~~i~D~PGli 216 (329)
T TIGR02729 160 VGLVGLPNAGKSTLISAVSAAK----PKIADYPFTTLVPNLGVVRV---------DDGRSFVIADIPGLI 216 (329)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----ccccCCCCCccCCEEEEEEe---------CCceEEEEEeCCCcc
Confidence 7899999999999999999753 12221 112223444321 123678999999984
No 178
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=94.92 E-value=0.051 Score=52.91 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|+++|+.++|||+|+|+++... |. .....|.|+-.....+.. ++..+.+-+.||.|..
T Consensus 11 kv~liG~~g~GKTtLi~~~~~~~----~~---~~~~~t~~~~~~~~~~~~--~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 11 KLILVGDGGVGKTTFVKRHLTGE----FE---KKYIPTLGVEVHPLKFYT--NCGPICFNVWDTAGQE 69 (215)
T ss_pred eEEEECCCCCCHHHHHHHHHhCC----CC---CCCCCccceEEEEEEEEE--CCeEEEEEEEECCCch
Confidence 37999999999999998665421 32 112345666554433322 3567889999999853
No 179
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.89 E-value=0.06 Score=49.35 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.++|+.++|||+|+|+|.... |. . + ..|.|.=... .++.+..+-+.||+|..+
T Consensus 2 v~lvG~~~~GKTsl~~~l~~~~----~~-~-~--~~t~~~~~~~------~~~~~~~~~i~Dt~G~~~ 55 (158)
T cd04151 2 ILILGLDNAGKTTILYRLQLGE----VV-T-T--IPTIGFNVET------VTYKNLKFQVWDLGGQTS 55 (158)
T ss_pred EEEECCCCCCHHHHHHHHccCC----Cc-C-c--CCccCcCeEE------EEECCEEEEEEECCCCHH
Confidence 6899999999999999996532 32 1 1 1133321110 123567889999999753
No 180
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.83 E-value=0.049 Score=50.79 Aligned_cols=54 Identities=28% Similarity=0.220 Sum_probs=36.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|++++.+.. |.-. ...|.|.-. . ..+++++.+-+.||+|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~----~~~~---~~pt~g~~~----~--~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSER----SLES---VVPTTGFNS----V--AIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----Cccc---ccccCCcce----E--EEeeCCeEEEEEECCCCc
Confidence 6899999999999999999752 4211 123445321 1 123467889999999954
No 181
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=94.82 E-value=0.049 Score=51.26 Aligned_cols=58 Identities=28% Similarity=0.196 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|++++.+.. |.- ....|.|--.- ..+ ..++..+.+-++||+|...
T Consensus 5 i~vvG~~~vGKTsL~~~~~~~~----f~~---~~~~t~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 5 IVMLGAGGVGKSAVTMQFISHS----FPD---YHDPTIEDAYK-QQA--RIDNEPALLDILDTAGQAE 62 (172)
T ss_pred EEEECCCCCcHHHHHHHHHhCC----CCC---CcCCcccceEE-EEE--EECCEEEEEEEEeCCCchh
Confidence 7899999999999999998743 531 11223332111 112 2246678889999999643
No 182
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=94.78 E-value=0.065 Score=50.03 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=36.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+|++.+.. |. + ...|.|.-... .+..+..+.+.||+|..
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~~----~~--~--~~~T~~~~~~~------~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQDE----FM--Q--PIPTIGFNVET------VEYKNLKFTIWDVGGKH 54 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CC--C--cCCcCceeEEE------EEECCEEEEEEECCCCh
Confidence 5699999999999999998742 42 1 12355543321 12356889999999964
No 183
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.75 E-value=0.047 Score=53.91 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|+|++.+.. |.... ...|.|.-..... ...++....+.++||+|..
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~----~~~~~--~~~t~~~~~~~~~--i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGE----YDDHA--YDASGDDDTYERT--VSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC----cCccC--cCCCccccceEEE--EEECCEEEEEEEEeCCCcc
Confidence 37899999999999999997542 42111 1112210000111 1123567889999999976
No 184
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=94.75 E-value=0.058 Score=49.46 Aligned_cols=58 Identities=31% Similarity=0.374 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|..++|||+|++++++.. |.- ...+.+..... ..+ ..++....+-+.||+|..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~----~~~--~~~~t~~~~~~--~~~--~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGT----FIE--KYDPTIEDFYR--KEI--EVDSSPSVLEILDTAGTE 60 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCC--CCCCchhheEE--EEE--EECCEEEEEEEEECCCcc
Confidence 37899999999999999998643 431 11222211221 111 224556678899999964
No 185
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=94.74 E-value=0.053 Score=59.16 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|...+|||+|||.|.+.. ..+++ |..| +-|+..+ ..+..+.+.||+|+.
T Consensus 161 VglVG~pNaGKSTLLn~Lt~ak----~kIa~ypfTTl~P-nlG~v~~---------~~~~~~~laD~PGli 217 (424)
T PRK12297 161 VGLVGFPNVGKSTLLSVVSNAK----PKIANYHFTTLVP-NLGVVET---------DDGRSFVMADIPGLI 217 (424)
T ss_pred EEEEcCCCCCHHHHHHHHHcCC----CccccCCcceece-EEEEEEE---------eCCceEEEEECCCCc
Confidence 8999999999999999999753 22322 2212 3343322 125678999999985
No 186
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=94.74 E-value=0.07 Score=50.02 Aligned_cols=53 Identities=23% Similarity=0.135 Sum_probs=35.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|+++|.... |. . . ..|.|+-... + +++++.+.+.||+|..
T Consensus 12 v~i~G~~~~GKTsli~~l~~~~----~~--~-~-~~t~g~~~~~--~----~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 12 ILMLGLDAAGKTTILYKLKLGQ----SV--T-T-IPTVGFNVET--V----TYKNVKFNVWDVGGQD 64 (168)
T ss_pred EEEECcCCCCHHHHHHHHccCC----Cc--c-c-cCCcccceEE--E----EECCEEEEEEECCCCH
Confidence 7899999999999999997532 42 1 1 2244543321 1 1346889999999964
No 187
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.73 E-value=0.05 Score=52.38 Aligned_cols=58 Identities=22% Similarity=0.264 Sum_probs=35.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.++|..++|||+|+|++++.. |.- ...+.+...... -+ ..++..+.+-++||+|...
T Consensus 2 v~vvG~~~vGKTsll~~~~~~~----~~~--~~~~t~~~~~~~--~~--~~~~~~~~l~i~D~~G~~~ 59 (198)
T cd04147 2 LVFMGAAGVGKTALIQRFLYDT----FEP--KYRRTVEEMHRK--EY--EVGGVSLTLDILDTSGSYS 59 (198)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCc--cCCCchhhheeE--EE--EECCEEEEEEEEECCCchh
Confidence 6899999999999999999753 321 111222111110 01 1124457788999999643
No 188
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=94.72 E-value=0.13 Score=51.17 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=53.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----CCC-eeeee-cCcCccceEEeeecccccc--------cCCCceeEEEeecC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC-----DEG-FGVGH-MRDTKTKGIWVWGNPVEME--------IDGSRTSVFYLDTE 66 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~-----~~g-F~vg~-~~~~~TkGIWmW~~p~~~~--------~~g~~~~vlllDTE 66 (542)
-|+|+|...+|||+|++.|+.... ..| ..... ...-..+||=+-+.+.... .++.+..+.++||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 489999999999999999996521 001 00000 0111223443333322211 13457889999999
Q ss_pred CcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchHh
Q 009154 67 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREAD 104 (542)
Q Consensus 67 G~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~a 104 (542)
|..+.. ....-++...=.-++||.....+..+.
T Consensus 82 G~~~f~-----~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 82 GHVDFS-----SEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred CccccH-----HHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 975422 223334444334467888766555444
No 189
>PRK04004 translation initiation factor IF-2; Validated
Probab=94.70 E-value=0.14 Score=58.21 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|...+|||+|+|+|.+.
T Consensus 7 p~V~i~Gh~~~GKTSLl~~l~~~ 29 (586)
T PRK04004 7 PIVVVLGHVDHGKTTLLDKIRGT 29 (586)
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 37999999999999999999875
No 190
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=94.66 E-value=0.078 Score=50.35 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|+|++.+.. |. ++ ..|.|+=....-+.. .++..+.+-+.||+|.
T Consensus 6 v~~vG~~~~GKTsli~~~~~~~----~~--~~--~~t~~~~~~~~~~~~-~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 6 IVMLGLDSAGKTTVLYRLKFNE----FV--NT--VPTKGFNTEKIKVSL-GNSKGITFHFWDVGGQ 62 (183)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----cC--Cc--CCccccceeEEEeec-cCCCceEEEEEECCCc
Confidence 7899999999999999998642 42 11 223442221111111 1345688999999995
No 191
>PRK12735 elongation factor Tu; Reviewed
Probab=94.61 E-value=0.084 Score=56.96 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=53.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC------Ceeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDE------GFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~------gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+|+|...+|||+|+|+|++..... ++.... +.+...+|+=+-....... .++..+.++||+|..+
T Consensus 14 ~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~--~~~~~i~~iDtPGh~~---- 87 (396)
T PRK12735 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE--TANRHYAHVDCPGHAD---- 87 (396)
T ss_pred EEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc--CCCcEEEEEECCCHHH----
Confidence 48999999999999999999732111 111111 1112234443322222221 2345788999999632
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~ 110 (542)
-..+.+.+++..=.-++|+.....+..+..+++.+
T Consensus 88 -f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~ 122 (396)
T PRK12735 88 -YVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122 (396)
T ss_pred -HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHH
Confidence 11233344433222346666665555555555443
No 192
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.59 E-value=0.072 Score=49.74 Aligned_cols=52 Identities=19% Similarity=0.148 Sum_probs=35.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|+|++.+. |.-. ...|.|.=.- .+. .++..+.+.||+|.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~-----~~~~---~~~t~g~~~~--~~~----~~~~~~~i~D~~G~ 53 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE-----IPKK---VAPTVGFTPT--KLR----LDKYEVCIFDLGGG 53 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC-----CCcc---ccCcccceEE--EEE----ECCEEEEEEECCCc
Confidence 789999999999999999864 3211 1234453211 111 24678899999995
No 193
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=94.57 E-value=0.051 Score=59.48 Aligned_cols=57 Identities=26% Similarity=0.217 Sum_probs=38.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+|+|+...|||+|||.|.... -.+-+.+...|+..-= .++ +-.+..|.|.||-|+-
T Consensus 271 iaIvGrPNvGKSSLlNaL~~~d----rsIVSpv~GTTRDaie--a~v----~~~G~~v~L~DTAGiR 327 (531)
T KOG1191|consen 271 IAIVGRPNVGKSSLLNALSRED----RSIVSPVPGTTRDAIE--AQV----TVNGVPVRLSDTAGIR 327 (531)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----ceEeCCCCCcchhhhe--eEe----ecCCeEEEEEeccccc
Confidence 7999999999999999999753 3332223344443321 111 1246889999999974
No 194
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=94.54 E-value=0.048 Score=52.06 Aligned_cols=57 Identities=28% Similarity=0.183 Sum_probs=36.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|..++|||+|+|++.+.. |.-. .+.|.|.-... ....++..+.+-++||+|..
T Consensus 2 i~ivG~~~vGKTsli~~l~~~~----f~~~---~~~t~~~~~~~---~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 2 LVVLGDGGVGKTALTIQLCLNH----FVET---YDPTIEDSYRK---QVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCcc---CCCchHhhEEE---EEEECCEEEEEEEEECCCch
Confidence 7899999999999999998642 5311 12222311111 11124566778899999953
No 195
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=94.51 E-value=0.08 Score=51.61 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|+.++|||+|+++|.+.. |.-..+......+.+. .+. ++.+..+.++||+|...
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~----~~~t~~s~~~~~~~~~--~~~----~~~~~~~~l~D~pG~~~ 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGK----YRSTVTSIEPNVATFI--LNS----EGKGKKFRLVDVPGHPK 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC----CCCccCcEeecceEEE--eec----CCCCceEEEEECCCCHH
Confidence 47899999999999999999753 3211111011122221 111 13456788999999654
No 196
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=94.46 E-value=0.12 Score=54.04 Aligned_cols=97 Identities=22% Similarity=0.187 Sum_probs=57.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC---CCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS---CDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~---~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D 78 (542)
||||+|=+.+|||+|+|+|-+.. .+.-|. |-+|+++-.-| ..+..+++.||=||-+- =..+=
T Consensus 180 viavVGYTNaGKsTLikaLT~Aal~p~drLFA---TLDpT~h~a~L----------psg~~vlltDTvGFisd--LP~~L 244 (410)
T KOG0410|consen 180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFA---TLDPTLHSAHL----------PSGNFVLLTDTVGFISD--LPIQL 244 (410)
T ss_pred eEEEEeecCccHHHHHHHHHhhhcCccchhhe---eccchhhhccC----------CCCcEEEEeechhhhhh--CcHHH
Confidence 89999999999999999998642 123454 44555554443 24678999999998651 11111
Q ss_pred hHH--HHHHHhhhccEEEcCCCCcchHhhhhHHHHHH
Q 009154 79 DRI--FALATVMSSVLIYNLPETIREADISRLSFAVE 113 (542)
Q Consensus 79 ~~I--FaLa~LLSS~lIYN~~g~I~e~al~~L~~v~e 113 (542)
..- -+|.=.-+|-+|..+...=..++-++-..|..
T Consensus 245 vaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~ 281 (410)
T KOG0410|consen 245 VAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLH 281 (410)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHH
Confidence 111 23444456667776655433333333333433
No 197
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.46 E-value=0.042 Score=51.85 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|.|+||.+||||+|++.|.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 37899999999999999999986
No 198
>PRK09866 hypothetical protein; Provisional
Probab=94.40 E-value=0.06 Score=61.18 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=36.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCcc--ceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT--KGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~T--kGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
++|+|+|+.++|||+|+|.|+|.. -.+.++ .++| .++-.+. | |.+..++..||-|+-+
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~---Vlpt~~--~~~t~lpT~i~~~-p------g~re~~L~~dtvgfI~ 129 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTE---VLPNRN--RPMTALPTLIRHT-P------GQKEPVLHFSHVAPID 129 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCc---cccCCC--cccccccEEEEec-C------CcCceeeecCCccchH
Confidence 479999999999999999999852 233321 2222 1121221 2 3455677788888654
No 199
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.38 E-value=0.042 Score=53.05 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.+||||+|++.|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999986
No 200
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=94.36 E-value=0.08 Score=55.61 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=39.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccc-------------cCC-CceeEEEee
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEME-------------IDG-SRTSVFYLD 64 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~-------------~~g-~~~~vlllD 64 (542)
|+++|..++|||+|+|+|.+.. +.+++ |.+| +.|+=-...+.+.+ .++ ..+.+-++|
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~----~~~~~~pftT~~p-~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D 75 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD----VEIANYPFTTIDP-NVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELID 75 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC----CcccCCCCccccc-eeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEE
Confidence 6899999999999999999863 33322 2233 44554443211110 122 346799999
Q ss_pred cCCcc
Q 009154 65 TEGFE 69 (542)
Q Consensus 65 TEG~~ 69 (542)
|+|+-
T Consensus 76 ~aGlv 80 (318)
T cd01899 76 VAGLV 80 (318)
T ss_pred CCCCC
Confidence 99983
No 201
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.33 E-value=0.065 Score=51.80 Aligned_cols=59 Identities=31% Similarity=0.288 Sum_probs=37.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |.-+ .+.|.|.-....-.. ..+.+..+.++||.|...
T Consensus 8 ivv~G~~g~GKTtl~~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~gq~~ 66 (219)
T COG1100 8 IVVLGDGGVGKTTLLNRLVGDE----FPEG---YPPTIGNLDPAKTIE--PYRRNIKLQLWDTAGQEE 66 (219)
T ss_pred EEEEcCCCccHHHHHHHHhcCc----Cccc---CCCceeeeeEEEEEE--eCCCEEEEEeecCCCHHH
Confidence 7899999999999999999864 4311 122333322221111 112266788999999755
No 202
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.30 E-value=0.035 Score=48.72 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||.|+|+.+|||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999974
No 203
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.18 Score=57.31 Aligned_cols=94 Identities=26% Similarity=0.346 Sum_probs=59.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVY 77 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~ 77 (542)
.|+++|...+|||+|.|+|.|.. ..||+ |++.. .|.- ...+..+-++|.||.-|..-. +.
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~----q~VgNwpGvTVEkk-eg~~----------~~~~~~i~ivDLPG~YSL~~~-S~ 68 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGAN----QKVGNWPGVTVEKK-EGKL----------KYKGHEIEIVDLPGTYSLTAY-SE 68 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccC----ceecCCCCeeEEEE-EEEE----------EecCceEEEEeCCCcCCCCCC-Cc
Confidence 58999999999999999999974 45543 33222 1111 123456889999998775432 33
Q ss_pred h---hHHHHHHHhhhccEEEcCCCCcchHhhhh-HHHHHHHHH
Q 009154 78 D---DRIFALATVMSSVLIYNLPETIREADISR-LSFAVELAE 116 (542)
Q Consensus 78 D---~~IFaLa~LLSS~lIYN~~g~I~e~al~~-L~~v~el~~ 116 (542)
| ++=|.+-- .==+|.|+ +|..+++. |.+..|+.|
T Consensus 69 DE~Var~~ll~~--~~D~ivnV---vDAtnLeRnLyltlQLlE 106 (653)
T COG0370 69 DEKVARDFLLEG--KPDLIVNV---VDATNLERNLYLTLQLLE 106 (653)
T ss_pred hHHHHHHHHhcC--CCCEEEEE---cccchHHHHHHHHHHHHH
Confidence 4 33343311 11256665 57778874 888878755
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=94.27 E-value=0.12 Score=55.84 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=57.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC---Ce---eeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDE---GF---GVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~---gF---~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+|+|...+|||+|+++|++..... .| .+.. ..+...+|+=+-....... .++..+.++||+|..+.
T Consensus 14 ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~--~~~~~i~~iDtPGh~~f--- 88 (394)
T PRK12736 14 NIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE--TEKRHYAHVDCPGHADY--- 88 (394)
T ss_pred EEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec--CCCcEEEEEECCCHHHH---
Confidence 48999999999999999999752111 11 1000 0111123332222211111 24567889999995321
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
....+.+++..=.-++|......+..++.+++.++
T Consensus 89 --~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~ 123 (394)
T PRK12736 89 --VKNMITGAAQMDGAILVVAATDGPMPQTREHILLA 123 (394)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHH
Confidence 12335555443344577777766777777776654
No 205
>PTZ00369 Ras-like protein; Provisional
Probab=94.26 E-value=0.076 Score=50.62 Aligned_cols=58 Identities=28% Similarity=0.143 Sum_probs=36.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|++++.+.. |.- . ...|.|--.. ..+ ..++....+-+.||+|...
T Consensus 8 i~iiG~~~~GKTsLi~~~~~~~----~~~--~-~~~t~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 8 LVVVGGGGVGKSALTIQFIQNH----FID--E-YDPTIEDSYR-KQC--VIDEETCLLDILDTAGQEE 65 (189)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCc--C-cCCchhhEEE-EEE--EECCEEEEEEEEeCCCCcc
Confidence 6799999999999999999753 421 1 1122222111 111 1235566777899999654
No 206
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=94.25 E-value=0.089 Score=50.22 Aligned_cols=59 Identities=25% Similarity=0.184 Sum_probs=37.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|.|+|+.++|||+|++++.+.. |.-. . ..|.|.-.-. ....++....+.+.||.|...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~----~~~~--~-~~t~~~~~~~---~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGY----FPQV--Y-EPTVFENYVH---DIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCc--c-CCcceeeeEE---EEEECCEEEEEEEEECCCChh
Confidence 37899999999999999999753 4311 1 1222221111 112245668899999999643
No 207
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.24 E-value=0.034 Score=49.93 Aligned_cols=22 Identities=45% Similarity=0.705 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999999996
No 208
>COG2262 HflX GTPases [General function prediction only]
Probab=94.24 E-value=0.3 Score=52.61 Aligned_cols=100 Identities=21% Similarity=0.255 Sum_probs=65.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D 78 (542)
.||++|=+..|||+|+|.|.+... +.-| .|-+|+|+-|-+++ +..++|-||=||-+ +--|+
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF---ATLdpttR~~~l~~----------g~~vlLtDTVGFI~---~LP~~ 257 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALTGADVYVADQLF---ATLDPTTRRIELGD----------GRKVLLTDTVGFIR---DLPHP 257 (411)
T ss_pred eEEEEeeccccHHHHHHHHhccCeecccccc---ccccCceeEEEeCC----------CceEEEecCccCcc---cCChH
Confidence 699999999999999999997532 2345 46778888887742 46789999999854 11222
Q ss_pred hHHHHHHHhhhc----cEEEcCCCCcchHhhhhHHHHHHHHHHH
Q 009154 79 DRIFALATVMSS----VLIYNLPETIREADISRLSFAVELAEEF 118 (542)
Q Consensus 79 ~~IFaLa~LLSS----~lIYN~~g~I~e~al~~L~~v~el~~~i 118 (542)
-+-|+-+-|.. =++..+...=+....++++.+.++-+.+
T Consensus 258 -LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el 300 (411)
T COG2262 258 -LVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI 300 (411)
T ss_pred -HHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc
Confidence 11122222222 2455555555566677787777765554
No 209
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=94.14 E-value=0.098 Score=51.56 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=38.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+++++... |.-. ...|.|+=.....+ ..++..+.+-+.||.|...
T Consensus 16 i~vvG~~gvGKTsli~~~~~~~----f~~~---~~~tig~~~~~~~~--~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 16 LVIVGDGGTGKTTFVKRHLTGE----FEKK---YEPTIGVEVHPLDF--FTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred EEEECcCCCCHHHHHHHHhhCC----CCCc---cCCccceeEEEEEE--EECCeEEEEEEEECCCchh
Confidence 7899999999999999987542 4311 12344443322111 2234568899999999654
No 210
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.03 E-value=0.052 Score=49.72 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.++|||+|++.|.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999986
No 211
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=94.01 E-value=0.1 Score=48.90 Aligned_cols=59 Identities=29% Similarity=0.265 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|..++|||+|+|++++.. |.+... ..|.|.-.-...+. .+|....+.+.||.|-.
T Consensus 7 v~~vG~~~vGKTsli~~~~~~~----f~~~~~--~~T~~~~~~~~~~~--~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 7 CFVLGAKGSGKSALLRAFLGRS----FSLNAY--SPTIKPRYAVNTVE--VYGQEKYLILREVGEDE 65 (169)
T ss_pred EEEECCCCCcHHHHHHHHhCCC----CCcccC--CCccCcceEEEEEE--ECCeEEEEEEEecCCcc
Confidence 6899999999999999999753 652211 22332211111111 23566778888988753
No 212
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=93.99 E-value=0.12 Score=49.44 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|..++|||+|++++.+.. |.- ....|.|+-.....+. .++..+.+-+.||.|..
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~----f~~---~~~~T~g~~~~~~~i~--~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE----FDE---DYIQTLGVNFMEKTIS--IRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCC---CCCCccceEEEEEEEE--ECCEEEEEEEEeCCCch
Confidence 37899999999999999998753 531 1234666544333332 24667889999999864
No 213
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=93.96 E-value=0.083 Score=49.93 Aligned_cols=40 Identities=25% Similarity=0.464 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeeccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPV 49 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~ 49 (542)
||++.||.++|||+|+..+.|.. ...| +||--+|+=.+.+
T Consensus 30 ivtlMGPSGcGKSTLls~~~G~L-a~~F-------~~~G~~~l~~~~l 69 (213)
T COG4136 30 IVTLMGPSGCGKSTLLSWMIGAL-AGQF-------SCTGELWLNEQRL 69 (213)
T ss_pred EEEEECCCCccHHHHHHHHHhhc-ccCc-------ceeeEEEECCeec
Confidence 79999999999999999999864 3445 6777788755443
No 214
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=93.94 E-value=0.12 Score=48.36 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=37.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.++|+.++|||+|++++.+. +|... ..+.+...+ ..... .++..+.+-+.||+|...
T Consensus 3 ~~i~G~~~~GKtsl~~~~~~~----~~~~~--~~~t~~~~~--~~~~~--~~~~~~~~~i~Dt~G~~~ 60 (173)
T cd04130 3 CVLVGDGAVGKTSLIVSYTTN----GYPTE--YVPTAFDNF--SVVVL--VDGKPVRLQLCDTAGQDE 60 (173)
T ss_pred EEEECCCCCCHHHHHHHHHhC----CCCCC--CCCceeeee--eEEEE--ECCEEEEEEEEECCCChh
Confidence 789999999999999999864 35321 112222222 22222 235667889999999643
No 215
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.92 E-value=0.048 Score=54.18 Aligned_cols=22 Identities=50% Similarity=0.626 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+|+||.+|||||||..|.+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999986
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=93.92 E-value=0.26 Score=56.20 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=56.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee---------cCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---------MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---------~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|+|+|...+|||+|+++|+... ..|.-.. ...-.+.||-+-....... ..+..+-++||+|..+..
T Consensus 7 nIaIiGh~d~GKTTLv~~Ll~~~--g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~--~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQS--GTFDSRAETQERVMDSNDLEKERGITILAKNTAIK--WNDYRINIVDTPGHADFG 82 (607)
T ss_pred EEEEECCCCCcHHHHHHHHHHhc--CCcccccccceeeeccccccccCceEEEEEEEEEe--cCCEEEEEEECCCcchhH
Confidence 48999999999999999999742 2343111 1123467777655443333 457889999999975532
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHh
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREAD 104 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~a 104 (542)
.....++...=.-++|++....+..+.
T Consensus 83 -----~~v~~~l~~aDg~ILVVDa~~G~~~qt 109 (607)
T PRK10218 83 -----GEVERVMSMVDSVLLVVDAFDGPMPQT 109 (607)
T ss_pred -----HHHHHHHHhCCEEEEEEecccCccHHH
Confidence 122333444223346677655444433
No 217
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.90 E-value=0.044 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.+.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 218
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.89 E-value=0.12 Score=50.61 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|..++|||+|++++.... |.- ....|-|+-.....+. .++..+.+-+.||.|..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~----f~~---~~~~Ti~~~~~~~~i~--~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT----FCE---ACKSGVGVDFKIKTVE--LRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CCC---cCCCcceeEEEEEEEE--ECCEEEEEEEEeCCCch
Confidence 37899999999999999998643 642 1234555443333222 24667889999999953
No 219
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=93.89 E-value=0.11 Score=49.35 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|++.... |.- ...+ |.+...- .++. .++....+-++||.|...
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~----~~~--~~~~-t~~~~~~-~~~~--~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGE----FPE--EYHP-TVFENYV-TDCR--VDGKPVQLALWDTAGQEE 61 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCc--ccCC-cccceEE-EEEE--ECCEEEEEEEEECCCChh
Confidence 47899999999999999998432 421 1111 2222211 1222 234567788999999654
No 220
>PLN03127 Elongation factor Tu; Provisional
Probab=93.88 E-value=0.16 Score=55.90 Aligned_cols=103 Identities=18% Similarity=0.246 Sum_probs=54.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC--C--ee--eee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDE--G--FG--VGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~--g--F~--vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+++|-..+|||+|+|+|.+..... + +. ... ..+-..+|+=+=......+ .++..+.++||||..+
T Consensus 63 ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~--~~~~~i~~iDtPGh~~---- 136 (447)
T PLN03127 63 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE--TAKRHYAHVDCPGHAD---- 136 (447)
T ss_pred EEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc--CCCeEEEEEECCCccc----
Confidence 48999999999999999998542111 1 11 100 0011123332222211121 3456789999999743
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
-....+.+++..=.-++|......+..++.+++.++
T Consensus 137 -f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~ 172 (447)
T PLN03127 137 -YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLA 172 (447)
T ss_pred -hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHH
Confidence 123344444432223455565555666666655544
No 221
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.81 E-value=0.041 Score=60.01 Aligned_cols=31 Identities=26% Similarity=0.244 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG 32 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg 32 (542)
||.++|++++||||++..|+......|+.|.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~ 132 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPC 132 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEE
Confidence 7999999999999999999854334466653
No 222
>PRK09602 translation-associated GTPase; Reviewed
Probab=93.77 E-value=0.13 Score=55.79 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|+|+|..++|||+|+|+|.+..
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~ 25 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLAD 25 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
No 223
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.76 E-value=0.047 Score=52.45 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=25.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG 32 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg 32 (542)
.|++|+|+.+||||+|++.|.+.....|+.||
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg 38 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRPG 38 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeEE
Confidence 37999999999999999999976433455553
No 224
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.051 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.644 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 225
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=93.73 E-value=0.25 Score=56.28 Aligned_cols=68 Identities=22% Similarity=0.317 Sum_probs=41.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC---CCCeeee--ecC-cCccceEEeeecccccc---cCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC---DEGFGVG--HMR-DTKTKGIWVWGNPVEME---IDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~---~~gF~vg--~~~-~~~TkGIWmW~~p~~~~---~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|...+|||+|+++|+.... ..+|.-. .+. .-.++||=+-...+... .++....+-++||+|..+
T Consensus 6 i~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 79999999999999999997421 1122210 000 01235665544433321 135668899999999765
No 226
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=93.71 E-value=0.17 Score=46.84 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
=|.++|..++|||+|++++... .|. + . ..|.|.-.- . . ..++..+.+.||+|.+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~----~~~--~-~-~pt~g~~~~--~--~--~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLG----EIV--T-T-IPTIGFNVE--T--V--EYKNISFTVWDVGGQD 55 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcC----CCc--c-c-CCCCCcceE--E--E--EECCEEEEEEECCCCH
Confidence 3789999999999999999643 253 1 1 223443221 0 1 1346789999999964
No 227
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.66 E-value=0.04 Score=51.80 Aligned_cols=32 Identities=31% Similarity=0.592 Sum_probs=26.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH 33 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~ 33 (542)
||+|+|+.+||||+|++.|.......|+.|+-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~v 32 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVAT 32 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 68999999999999999999864445776653
No 228
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.65 E-value=0.053 Score=55.25 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~l 52 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGLL 52 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999963
No 229
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=93.61 E-value=0.051 Score=51.63 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|+|+-+||||+|.|+|...
T Consensus 9 K~VailG~ESsGKStLv~kLA~~ 31 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANI 31 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHH
Confidence 47999999999999999999975
No 230
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=93.59 E-value=0.11 Score=54.31 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=35.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|+.+|+.+.|||+|||.|-+... .+++ |+-.+--|+- .-++..+=++|+||+
T Consensus 66 v~lVGfPsvGKStLL~~LTnt~s----eva~y~FTTl~~VPG~l----------~Y~ga~IQild~Pgi 120 (365)
T COG1163 66 VALVGFPSVGKSTLLNKLTNTKS----EVADYPFTTLEPVPGML----------EYKGAQIQLLDLPGI 120 (365)
T ss_pred EEEEcCCCccHHHHHHHHhCCCc----cccccCceecccccceE----------eecCceEEEEcCccc
Confidence 78999999999999999998741 1221 1111222222 235677889999995
No 231
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.51 E-value=0.06 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 232
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.48 E-value=0.062 Score=52.19 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 233
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.47 E-value=0.062 Score=51.41 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 234
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=93.46 E-value=0.27 Score=55.96 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.+|+|+|...+|||+|+|+|.+..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~ 28 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSA 28 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 379999999999999999999863
No 235
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.39 E-value=0.086 Score=54.60 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++||.++|||+||+.|.|.
T Consensus 30 i~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 30 IVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 236
>COG0218 Predicted GTPase [General function prediction only]
Probab=93.38 E-value=0.76 Score=45.16 Aligned_cols=98 Identities=19% Similarity=0.226 Sum_probs=60.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCe-eeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchh-h--
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGF-GVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVY-D-- 78 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF-~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~-D-- 78 (542)
|+.+|....|||+|+|.|.|.. +. .++.| -..|+=|=.... +-.+.++|.||.|=..-+... +
T Consensus 27 IaF~GRSNVGKSSlIN~l~~~k---~LArtSkt-PGrTq~iNff~~---------~~~~~lVDlPGYGyAkv~k~~~e~w 93 (200)
T COG0218 27 IAFAGRSNVGKSSLINALTNQK---NLARTSKT-PGRTQLINFFEV---------DDELRLVDLPGYGYAKVPKEVKEKW 93 (200)
T ss_pred EEEEccCcccHHHHHHHHhCCc---ceeecCCC-CCccceeEEEEe---------cCcEEEEeCCCcccccCCHHHHHHH
Confidence 7899999999999999999952 22 23322 233444433211 112789999998754333221 1
Q ss_pred -hHHH----HHHHhhhccEEEcCCCCcchHhhhhHHHHHH
Q 009154 79 -DRIF----ALATVMSSVLIYNLPETIREADISRLSFAVE 113 (542)
Q Consensus 79 -~~IF----aLa~LLSS~lIYN~~g~I~e~al~~L~~v~e 113 (542)
..|. .=+.|---+++.-+...+++.|.+.++++.+
T Consensus 94 ~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~ 133 (200)
T COG0218 94 KKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE 133 (200)
T ss_pred HHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH
Confidence 1111 1123445567888888888888887777765
No 237
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.36 E-value=0.066 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 238
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.35 E-value=0.054 Score=52.22 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+|+|+.+||||||++.|.+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 239
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=93.34 E-value=0.16 Score=47.95 Aligned_cols=58 Identities=26% Similarity=0.143 Sum_probs=37.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|++++.... |. +.. ..|.|.-.. ..+ ..++..+.+-+.||.|...
T Consensus 4 i~vvG~~~vGKTsl~~~~~~~~----f~--~~~-~pt~~~~~~-~~~--~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 4 CVVVGDGAVGKTCLLISYTTNK----FP--SEY-VPTVFDNYA-VTV--MIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CC--CCC-CCceeeeeE-EEE--EECCEEEEEEEEECCCccc
Confidence 7899999999999999999643 63 111 223332221 111 2235668899999999754
No 240
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.34 E-value=0.068 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 241
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=93.33 E-value=0.24 Score=56.17 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+++|...+|||+|+|.|.|.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~ 23 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGI 23 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999999974
No 242
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.31 E-value=0.068 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 243
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.31 E-value=0.067 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 244
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.30 E-value=0.37 Score=46.24 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+.|+|+.+||||+|++.|++.
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999986
No 245
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.27 E-value=0.067 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 246
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.23 E-value=0.071 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 247
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.20 E-value=0.072 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 248
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.20 E-value=0.068 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||||++.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6899999999999999999996
No 249
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.19 E-value=0.072 Score=51.99 Aligned_cols=22 Identities=50% Similarity=0.700 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 250
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.18 E-value=0.073 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 251
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.18 E-value=0.18 Score=48.00 Aligned_cols=58 Identities=26% Similarity=0.229 Sum_probs=38.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|..++|||.|++++.+.. |.-. . ..|.|.-. ...+ ..++..+.+-+.||.|..
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~----f~~~--~-~~t~~~~~-~~~~--~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC----YPET--Y-VPTVFENY-TASF--EIDEQRIELSLWDTSGSP 60 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc----CCCC--c-CCceEEEE-EEEE--EECCEEEEEEEEECCCch
Confidence 37899999999999999998753 6421 1 22333221 2222 234677899999999953
No 252
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=93.17 E-value=0.21 Score=47.59 Aligned_cols=53 Identities=23% Similarity=0.164 Sum_probs=35.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+|++++.... |. . ..| |.|.-.. ++ +..++.+.+.||+|..
T Consensus 20 v~lvG~~~vGKTsli~~~~~~~----~~--~-~~~-T~~~~~~--~~----~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 20 ILMVGLDAAGKTTILYKLKLGE----VV--T-TIP-TIGFNVE--TV----EYKNLKFTMWDVGGQD 72 (182)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC----cc--c-cCC-ccccceE--EE----EECCEEEEEEECCCCH
Confidence 7899999999999999996432 42 1 122 5554322 11 2356889999999963
No 253
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.16 E-value=0.072 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 254
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.067 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999996
No 255
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=93.13 E-value=0.2 Score=48.44 Aligned_cols=59 Identities=24% Similarity=0.209 Sum_probs=39.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..+.|||+|++++.+.. |. .....|.|+-+....+. .++..+.+-+.||.|...
T Consensus 9 ivviG~~~vGKTsll~~~~~~~----~~---~~~~~t~~~~~~~~~i~--~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 9 FLLVGDSDVGKGEILASLQDGS----TE---SPYGYNMGIDYKTTTIL--LDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CC---CCCCCcceeEEEEEEEE--ECCEEEEEEEEeCCCcHH
Confidence 6799999999999999998642 53 11123455543332222 346678899999999643
No 256
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.13 E-value=0.074 Score=52.82 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 257
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=93.04 E-value=0.076 Score=53.47 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 258
>PRK00049 elongation factor Tu; Reviewed
Probab=93.04 E-value=0.2 Score=54.02 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------CCeeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD------EGFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~------~gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+|+|...+|||+|+++|++.... .++.+.. ..+...+|+=+-....... .++..+.++||||..+
T Consensus 14 ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~--~~~~~i~~iDtPG~~~---- 87 (396)
T PRK00049 14 NVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE--TEKRHYAHVDCPGHAD---- 87 (396)
T ss_pred EEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc--CCCeEEEEEECCCHHH----
Confidence 4899999999999999999974211 1111100 0011123333222211111 2356788999999632
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
-....+.+++..=.-+++......++.++.+.+.++
T Consensus 88 -f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~ 123 (396)
T PRK00049 88 -YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLA 123 (396)
T ss_pred -HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHH
Confidence 112233333332222355555555665555555443
No 259
>PRK01889 GTPase RsgA; Reviewed
Probab=93.03 E-value=0.093 Score=55.93 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.++++|+.++|||+|+|.|+|..
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhc
Confidence 68999999999999999999863
No 260
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.03 E-value=0.079 Score=50.88 Aligned_cols=21 Identities=43% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|+|+||.++|||+|||.+++
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 689999999999999999875
No 261
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.03 E-value=0.083 Score=49.61 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 262
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.01 E-value=0.081 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 263
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=93.01 E-value=0.47 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+-|+|+|..++|||+|+..|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999876
No 264
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.00 E-value=0.081 Score=51.39 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|+|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 265
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=93.00 E-value=0.19 Score=47.29 Aligned_cols=54 Identities=24% Similarity=0.141 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.++|+.++|||+|++++... -|. +. ..|.|.-... +. .+++.+.+.||+|..
T Consensus 15 ki~l~G~~~~GKTsL~~~~~~~----~~~--~~--~~t~~~~~~~--~~----~~~~~l~l~D~~G~~ 68 (175)
T smart00177 15 RILMVGLDAAGKTTILYKLKLG----ESV--TT--IPTIGFNVET--VT----YKNISFTVWDVGGQD 68 (175)
T ss_pred EEEEEcCCCCCHHHHHHHHhcC----CCC--Cc--CCccccceEE--EE----ECCEEEEEEECCCCh
Confidence 3789999999999999999642 142 11 2355543321 11 246889999999964
No 266
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.00 E-value=0.075 Score=51.73 Aligned_cols=22 Identities=41% Similarity=0.776 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 267
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.99 E-value=0.08 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 268
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.98 E-value=0.08 Score=52.40 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 269
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.98 E-value=0.079 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 270
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=92.97 E-value=0.071 Score=50.46 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=27.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM 34 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~ 34 (542)
++|+|.|+.++||||+++.|.+.....|+.+-..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 6899999999999999999987643456665443
No 271
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.97 E-value=0.081 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.667 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 68999999999999999999973
No 272
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=92.97 E-value=0.083 Score=51.02 Aligned_cols=23 Identities=43% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 273
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.96 E-value=0.081 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 274
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.94 E-value=0.11 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.++||.++|||+|++.|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999975
No 275
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.084 Score=51.74 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 276
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.92 E-value=0.085 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 277
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.88 E-value=0.084 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 278
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.86 E-value=0.086 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 279
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.86 E-value=0.086 Score=51.97 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 280
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.86 E-value=0.089 Score=50.75 Aligned_cols=22 Identities=45% Similarity=0.610 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 281
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=92.85 E-value=0.16 Score=52.97 Aligned_cols=95 Identities=23% Similarity=0.321 Sum_probs=55.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC--CCCeeeee--cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhh
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC--DEGFGVGH--MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYD 78 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~--~~gF~vg~--~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D 78 (542)
|=|+|-.+.|||.|+|.+....- .+.-.||+ ++-.-++++ +.. .....+.++||+|...+.-.+..|
T Consensus 146 vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~------iri---~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 146 VMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER------IRI---SHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred EEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh------eEe---ccCCceEEecCCCcCCCCCCCHHH
Confidence 55899999999999998875321 11223333 221222221 111 134569999999988776566666
Q ss_pred hHHHHHHHhhhccEEEcCCCCcchHh-hhhHHHHHH
Q 009154 79 DRIFALATVMSSVLIYNLPETIREAD-ISRLSFAVE 113 (542)
Q Consensus 79 ~~IFaLa~LLSS~lIYN~~g~I~e~a-l~~L~~v~e 113 (542)
..=.||+.++++.+ .++.. .++|.+.++
T Consensus 217 ~lKLAL~g~Vkd~~-------V~~~~~adylL~~lN 245 (335)
T KOG2485|consen 217 GLKLALCGLVKDHL-------VGEETIADYLLYLLN 245 (335)
T ss_pred hhhhhhcccccccc-------cCHHHHHHHHHHHHh
Confidence 54456766555443 34333 355655555
No 282
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.84 E-value=0.066 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 6899999999999999999986
No 283
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.79 E-value=0.084 Score=52.18 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++||||||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 284
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.79 E-value=0.11 Score=41.65 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+..|.|+.+||||+||+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998875
No 285
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.78 E-value=0.091 Score=50.96 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 286
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.78 E-value=0.088 Score=52.21 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 287
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.76 E-value=0.088 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 288
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.76 E-value=0.088 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 289
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.76 E-value=0.091 Score=51.71 Aligned_cols=22 Identities=50% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999996
No 290
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=0.25 Score=52.64 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=33.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeec
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGN 47 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~ 47 (542)
.|-++|+|+||||+++|.|+... -.|-.+|+.-.+.---+-||+.
T Consensus 60 mill~GqyStGKTtfi~yLle~d-ypg~riGpEPTtd~Fi~vM~G~ 104 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQD-YPGLRIGPEPTTDRFIAVMHGD 104 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCC-CCccccCCCCCcceeEEEEecC
Confidence 46789999999999999999874 3577777753333356677763
No 291
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.72 E-value=0.09 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 292
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.71 E-value=0.13 Score=48.56 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||+|++.|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 293
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.70 E-value=0.093 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 25 ~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 294
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=92.70 E-value=0.082 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+|.|+.+||||||.+.|...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 295
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=92.68 E-value=0.15 Score=54.37 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=42.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccce-EEeeeccccc-ccCCCceeEEEeecCCcccccCcchhhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKG-IWVWGNPVEM-EIDGSRTSVFYLDTEGFESIGKSNVYDD 79 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkG-IWmW~~p~~~-~~~g~~~~vlllDTEG~~~~e~~~~~D~ 79 (542)
+++++||.++||||||..|+|. ++.|.| |++-++++.. .....++.+|+=|--=|-. -+..|+
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGf------------e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPH---ltV~~N 97 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGF------------EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPH---MTVEEN 97 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC------------CCCCCceEEECCEECCCCChhhcccceeecCcccCCC---CcHHHH
Confidence 5899999999999999999985 245555 6666655432 2223445555544333322 123455
Q ss_pred HHHHHH
Q 009154 80 RIFALA 85 (542)
Q Consensus 80 ~IFaLa 85 (542)
--|.|-
T Consensus 98 VafGLk 103 (352)
T COG3842 98 VAFGLK 103 (352)
T ss_pred hhhhhh
Confidence 566664
No 296
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=92.68 E-value=0.24 Score=46.94 Aligned_cols=52 Identities=29% Similarity=0.217 Sum_probs=37.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|+.++|||+++++|.... +. +.| |.|.=+....+ .+..+-+.|..|-.
T Consensus 17 ililGl~~sGKTtll~~l~~~~----~~~~~p-----T~g~~~~~i~~------~~~~~~~~d~gG~~ 69 (175)
T PF00025_consen 17 ILILGLDGSGKTTLLNRLKNGE----ISETIP-----TIGFNIEEIKY------KGYSLTIWDLGGQE 69 (175)
T ss_dssp EEEEESTTSSHHHHHHHHHSSS----EEEEEE-----ESSEEEEEEEE------TTEEEEEEEESSSG
T ss_pred EEEECCCccchHHHHHHhhhcc----ccccCc-----ccccccceeee------CcEEEEEEeccccc
Confidence 7899999999999999998632 32 222 56666654333 46788899998853
No 297
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.67 E-value=0.092 Score=52.49 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 298
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=92.67 E-value=0.24 Score=46.72 Aligned_cols=58 Identities=24% Similarity=0.217 Sum_probs=36.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+.++.+.. |.- ...|.+.... ...+ ..++....+.+.||.|...
T Consensus 4 i~iiG~~~vGKSsli~~~~~~~----f~~--~~~~t~~~~~--~~~~--~~~~~~~~l~i~Dt~G~~~ 61 (174)
T cd01871 4 CVVVGDGAVGKTCLLISYTTNA----FPG--EYIPTVFDNY--SANV--MVDGKPVNLGLWDTAGQED 61 (174)
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCC--cCCCcceeee--EEEE--EECCEEEEEEEEECCCchh
Confidence 7899999999999999998642 531 1112221111 1111 2246678899999999643
No 299
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.66 E-value=0.085 Score=51.32 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|+.+||||||++.|.+.
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999985
No 300
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.66 E-value=0.097 Score=50.62 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 301
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.65 E-value=0.13 Score=54.10 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
||.++||.++||||++-.|++.....|.+|
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V 145 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQGKKV 145 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCeE
Confidence 789999999999999999987644455555
No 302
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.64 E-value=0.094 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.538 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999986
No 303
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.63 E-value=0.1 Score=49.62 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 304
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.63 E-value=0.095 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 305
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.63 E-value=0.098 Score=50.85 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 306
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.62 E-value=0.1 Score=49.37 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 307
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.62 E-value=0.099 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 308
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.59 E-value=0.098 Score=51.89 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 309
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.57 E-value=0.22 Score=46.39 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
=|.++|+.++|||+|++++.... |.-. .+.|.|-.. ..+ ..+|..+.+.+.||.|..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~----f~~~---~~~~~~~~~--~~i--~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGS----YVQL---ESPEGGRFK--KEV--LVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCC----CCCC---CCCCccceE--EEE--EECCEEEEEEEEECCCCC
Confidence 37899999999999999887542 5311 122333321 122 234667788999999974
No 310
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.099 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 311
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.56 E-value=0.095 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhcc
Confidence 6899999999999999999997
No 312
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.53 E-value=0.1 Score=51.32 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 313
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.53 E-value=0.31 Score=52.48 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=55.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---C---Ceeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD---E---GFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~---~---gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
.|+|+|...+|||+|+++|++.... . ++.+.. ..+-..+|+=+=...... +.++..+.++||+|..+.
T Consensus 14 ~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~--~~~~~~~~liDtpGh~~f--- 88 (394)
T TIGR00485 14 NIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEY--ETENRHYAHVDCPGHADY--- 88 (394)
T ss_pred EEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEE--cCCCEEEEEEECCchHHH---
Confidence 5899999999999999999853110 0 111100 000011222221111111 234567889999996431
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
..+.+.+++..=.-++++.....+..+..+++.++
T Consensus 89 --~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~ 123 (394)
T TIGR00485 89 --VKNMITGAAQMDGAILVVSATDGPMPQTREHILLA 123 (394)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHH
Confidence 12334444433334577777666666666666554
No 314
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.52 E-value=0.055 Score=50.00 Aligned_cols=30 Identities=33% Similarity=0.567 Sum_probs=22.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFG 30 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~ 30 (542)
.||+|+|+.+||||+|+..|.....+.|..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~ 30 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYR 30 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCc
Confidence 489999999999999999998753223443
No 315
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.52 E-value=0.099 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 316
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.52 E-value=0.1 Score=51.01 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 317
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.51 E-value=0.14 Score=50.08 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|.|+||.++|||+|++.|...
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhc
Confidence 36889999999999999999854
No 318
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.50 E-value=0.1 Score=50.90 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=92.45 E-value=0.11 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|++++|||++||.|.|.
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCC
Confidence 4899999999999999999996
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.14 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
|-+|.||.+||||||.+.|.|..
T Consensus 32 vhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 32 VHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999963
No 321
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.1 Score=51.88 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 322
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=92.44 E-value=0.11 Score=51.38 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 323
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.41 E-value=0.11 Score=51.48 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 324
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.40 E-value=0.11 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999996
No 325
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.39 E-value=0.16 Score=56.74 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|+.|+|||+++..|...
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998863
No 326
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.1 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 31 VVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhhh
Confidence 6899999999999999999984
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.39 E-value=0.11 Score=52.80 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999963
No 328
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.11 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.532 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 329
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.38 E-value=0.11 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 330
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.37 E-value=0.11 Score=49.05 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 331
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=92.37 E-value=0.11 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 41 ~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 41 VTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 332
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=92.36 E-value=0.21 Score=46.64 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|-++|+.++|||+|++.|.|.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 3679999999999999999986
No 333
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.36 E-value=0.11 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 334
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.36 E-value=0.087 Score=49.80 Aligned_cols=32 Identities=31% Similarity=0.425 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG 32 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg 32 (542)
.+|+|+|+.+||||+|++.|.......|+.|+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~ 33 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVA 33 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 37999999999999999999976433455443
No 335
>PRK08233 hypothetical protein; Provisional
Probab=92.35 E-value=0.11 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+||+|.|+.+||||||.+.|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 48999999999999999999975
No 336
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=92.35 E-value=0.23 Score=50.59 Aligned_cols=22 Identities=45% Similarity=0.687 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||+..++|.
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 337
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.30 E-value=0.11 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 338
>PRK05433 GTP-binding protein LepA; Provisional
Probab=92.28 E-value=0.53 Score=53.71 Aligned_cols=102 Identities=19% Similarity=0.301 Sum_probs=54.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCee--eeec-CcCccceEEeeecccccc---cCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEGFG--VGHM-RDTKTKGIWVWGNPVEME---IDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~gF~--vg~~-~~~~TkGIWmW~~p~~~~---~~g~~~~vlllDTEG~~~~e 72 (542)
=|+|+|...+|||+|+++|+.... ..++. +..+ ..-.++||=+-....... .++++..+-++||+|..+..
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 379999999999999999986420 11121 0000 011234544433222211 14667889999999976532
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhH
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRL 108 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L 108 (542)
....-+++..=.-++|+.....++.+....+
T Consensus 89 -----~~v~~sl~~aD~aILVVDas~gv~~qt~~~~ 119 (600)
T PRK05433 89 -----YEVSRSLAACEGALLVVDASQGVEAQTLANV 119 (600)
T ss_pred -----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 1111223332233466666555554444443
No 339
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.28 E-value=0.11 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 340
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.27 E-value=0.12 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 341
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=92.25 E-value=0.11 Score=56.54 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.||+|+|+++||||||++.|.+.
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999775
No 342
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.25 E-value=0.12 Score=50.14 Aligned_cols=22 Identities=50% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 343
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.25 E-value=0.11 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 344
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=92.24 E-value=0.51 Score=53.00 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=51.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCe-eeeecCc---------------CccceEEeeecccccccCCCceeEEEeec
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGF-GVGHMRD---------------TKTKGIWVWGNPVEMEIDGSRTSVFYLDT 65 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF-~vg~~~~---------------~~TkGIWmW~~p~~~~~~g~~~~vlllDT 65 (542)
-|+|+|...+|||+|+++|+... |. ...++++ -.++||=+-...... +..+..+.++||
T Consensus 13 niaiiGh~~aGKTTL~e~Ll~~~---g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~--~~~~~~inliDT 87 (527)
T TIGR00503 13 TFAIISHPDAGKTTITEKVLLYG---GAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQF--PYRDCLVNLLDT 87 (527)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC---CCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEE--eeCCeEEEEEEC
Confidence 48999999999999999997532 22 1001111 113344443332222 245678899999
Q ss_pred CCcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchH
Q 009154 66 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREA 103 (542)
Q Consensus 66 EG~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~ 103 (542)
+|..+.. .+ ..-++...=+-++|++....+..+
T Consensus 88 PG~~df~----~~-~~~~l~~aD~aIlVvDa~~gv~~~ 120 (527)
T TIGR00503 88 PGHEDFS----ED-TYRTLTAVDNCLMVIDAAKGVETR 120 (527)
T ss_pred CChhhHH----HH-HHHHHHhCCEEEEEEECCCCCCHH
Confidence 9975421 11 222444433445677766555433
No 345
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=92.24 E-value=0.11 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68999999999999999999963
No 346
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.11 Score=51.96 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 347
>PLN03126 Elongation factor Tu; Provisional
Probab=92.23 E-value=0.53 Score=52.21 Aligned_cols=102 Identities=17% Similarity=0.184 Sum_probs=56.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC------CCCeeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC------DEGFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~------~~gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+++|...+|||+|+|+|++... ..++.... +.+-..+||=+-....... .++..+.++||+|..+.
T Consensus 83 ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~--~~~~~i~liDtPGh~~f--- 157 (478)
T PLN03126 83 NIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE--TENRHYAHVDCPGHADY--- 157 (478)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe--cCCcEEEEEECCCHHHH---
Confidence 489999999999999999996320 01111111 1122345654422222221 24567889999996431
Q ss_pred chhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHH
Q 009154 75 NVYDDRIFALATVMSSVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 75 ~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~ 110 (542)
....+.+++..=.-++|......+..+..+++..
T Consensus 158 --~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~ 191 (478)
T PLN03126 158 --VKNMITGAAQMDGAILVVSGADGPMPQTKEHILL 191 (478)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 1233555554223456777665566665555544
No 348
>PRK10908 cell division protein FtsE; Provisional
Probab=92.22 E-value=0.12 Score=50.76 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 349
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.21 E-value=0.11 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 49 VTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999995
No 350
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.19 E-value=0.12 Score=48.60 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 351
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.15 E-value=0.12 Score=51.91 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 352
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.13 E-value=0.11 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.366 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred EEEEECCCCCCHHHHHHHhccc
Confidence 6899999999999999999996
No 353
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.12 E-value=0.12 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 32 ITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 354
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=92.11 E-value=0.12 Score=51.67 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999995
No 355
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.10 E-value=0.12 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 356
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.09 E-value=0.23 Score=51.09 Aligned_cols=64 Identities=25% Similarity=0.326 Sum_probs=38.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|--+|.++.|||+||+.|++.+ |.--+..+. -.++-+-.....+..++-...+-++||-|+||.
T Consensus 45 ilCvGETg~GKsTLmdtLFNt~----f~~~p~~H~-~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQ 108 (406)
T KOG3859|consen 45 ILCVGETGLGKSTLMDTLFNTK----FESEPSTHT-LPNVKLQANTYELQESNVRLKLTIVDTVGFGDQ 108 (406)
T ss_pred EEEeccCCccHHHHHHHHhccc----cCCCCCccC-CCCceeecchhhhhhcCeeEEEEEEeecccccc
Confidence 3458999999999999999874 543222111 122222222222222344567789999999983
No 357
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.09 E-value=0.12 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 358
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=92.08 E-value=0.12 Score=51.11 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 359
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=92.08 E-value=0.35 Score=52.52 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+|+|++.
T Consensus 8 ~v~iiGh~d~GKSTL~~~Ll~~ 29 (425)
T PRK12317 8 NLAVIGHVDHGKSTLVGRLLYE 29 (425)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4899999999999999999964
No 360
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=92.06 E-value=0.31 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+++|+..
T Consensus 29 ~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 29 RFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred EEEEECCCCCChHHHHHHHHHh
Confidence 4789999999999999999965
No 361
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.12 Score=52.10 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 362
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.12 Score=51.25 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 363
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.04 E-value=0.12 Score=52.50 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 364
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=92.02 E-value=0.12 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 365
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=92.02 E-value=0.67 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+||+++|....|||+|+|.|.|.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~ 23 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGV 23 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999975
No 366
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.01 E-value=0.13 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|+|..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 367
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.99 E-value=0.13 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|+|..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 368
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=91.98 E-value=0.59 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|.|+|+..
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~ 33 (689)
T TIGR00484 12 NIGISAHIDAGKTTTTERILFY 33 (689)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999864
No 369
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=91.98 E-value=0.12 Score=52.37 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 47 ~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 47 VTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 370
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=91.97 E-value=0.13 Score=41.37 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.+||||++++.|...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 371
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.95 E-value=0.13 Score=51.93 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 32 ILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 372
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.12 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|++.|.|.
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999996
No 373
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=91.94 E-value=0.12 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.344 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 374
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.93 E-value=0.13 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 40 ~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 40 VTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 375
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=91.93 E-value=0.13 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 376
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=91.92 E-value=0.14 Score=48.76 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 377
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.92 E-value=0.13 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++||||||+.|.|.
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 378
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.92 E-value=0.13 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 379
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=91.89 E-value=0.13 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 35 VMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999996
No 380
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.88 E-value=0.13 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 32 VTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 381
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.88 E-value=0.14 Score=49.36 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 382
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.87 E-value=0.13 Score=52.18 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 383
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.87 E-value=0.14 Score=49.71 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 384
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.86 E-value=0.13 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.309 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 385
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=91.85 E-value=0.13 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 30 ITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 386
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=91.84 E-value=0.13 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 387
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.84 E-value=0.28 Score=49.17 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|..++|||.|++++.+.. |.- ...| |.|.-. ... ...++..+.+-+.||.|..
T Consensus 16 IvvvGd~~VGKTsLi~r~~~~~----F~~--~y~p-Ti~~~~-~~~--i~~~~~~v~l~iwDTaG~e 72 (232)
T cd04174 16 LVLVGDVQCGKTAMLQVLAKDC----YPE--TYVP-TVFENY-TAG--LETEEQRVELSLWDTSGSP 72 (232)
T ss_pred EEEECCCCCcHHHHHHHHhcCC----CCC--CcCC-ceeeee-EEE--EEECCEEEEEEEEeCCCch
Confidence 6799999999999999998642 642 1122 323221 122 2335778899999999953
No 388
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=91.83 E-value=0.26 Score=49.72 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|++++.. |.-. ..+.+..... +- .+.++....+-++||.|...
T Consensus 3 VvvlG~~gvGKTSLi~r~~~~~----f~~~--y~pTi~d~~~--k~--~~i~~~~~~l~I~Dt~G~~~ 60 (247)
T cd04143 3 MVVLGASKVGKTAIVSRFLGGR----FEEQ--YTPTIEDFHR--KL--YSIRGEVYQLDILDTSGNHP 60 (247)
T ss_pred EEEECcCCCCHHHHHHHHHcCC----CCCC--CCCChhHhEE--EE--EEECCEEEEEEEEECCCChh
Confidence 7899999999999999998653 5321 1121111111 11 11245667888999999643
No 389
>PRK13351 elongation factor G; Reviewed
Probab=91.82 E-value=0.54 Score=54.40 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|..++|||+|+++|+..
T Consensus 10 ni~iiG~~~~GKTtL~~~ll~~ 31 (687)
T PRK13351 10 NIGILAHIDAGKTTLTERILFY 31 (687)
T ss_pred EEEEECCCCCcchhHHHHHHHh
Confidence 4899999999999999999964
No 390
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=91.82 E-value=0.49 Score=53.94 Aligned_cols=65 Identities=23% Similarity=0.335 Sum_probs=40.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecC---------cCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR---------DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~---------~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|...+|||+|+++|+... ..|.-...+ .-..+||=+-+...... ..+..+-++||+|..+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~s--g~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~--~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQS--GTFRANEAVAERVMDSNDLERERGITILAKNTAIR--YNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhc--CCCcccccceeecccCchHHHhCCccEEeeeEEEE--ECCEEEEEEECCCHHH
Confidence 48999999999999999999642 223211100 11245555444332222 3467888999999755
No 391
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=91.81 E-value=0.13 Score=52.12 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~ 63 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 392
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.80 E-value=0.13 Score=51.41 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 393
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.78 E-value=0.13 Score=52.25 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 394
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.78 E-value=0.14 Score=51.79 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 395
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.77 E-value=0.14 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 32 LTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999996
No 396
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.77 E-value=0.2 Score=48.62 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=28.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD 36 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~ 36 (542)
.++.+.||.++|||||+..|+... +-.|+|++|+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR 39 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTR 39 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccC
Confidence 368899999999999999999874 45567777654
No 397
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.77 E-value=0.14 Score=51.20 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~ 53 (252)
T PRK14272 32 VNALIGPSGCGKTTFLRAINRM 53 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 398
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.76 E-value=0.14 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 33 ITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999985
No 399
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.75 E-value=0.14 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 400
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=91.74 E-value=0.33 Score=48.19 Aligned_cols=55 Identities=22% Similarity=0.274 Sum_probs=36.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|++++.. |. .+ ..|.|.-+.... .....+.+.||.|...
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~----f~--~~--~~Tig~~~~~~~------~~~~~l~iwDt~G~e~ 56 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR----FK--DT--VSTVGGAFYLKQ------WGPYNISIWDTAGREQ 56 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC----CC--CC--CCccceEEEEEE------eeEEEEEEEeCCCccc
Confidence 47899999999999999999753 63 11 224443322211 1356789999999643
No 401
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.74 E-value=0.14 Score=52.16 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|+|..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 402
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=91.73 E-value=0.14 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|+|..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.72 E-value=0.15 Score=48.38 Aligned_cols=22 Identities=41% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 404
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.71 E-value=0.14 Score=52.10 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 41 ~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 41 VTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 405
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=91.70 E-value=0.14 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 406
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=91.69 E-value=0.14 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 407
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.69 E-value=0.14 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 31 VTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 408
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=91.67 E-value=0.9 Score=53.40 Aligned_cols=92 Identities=20% Similarity=0.272 Sum_probs=48.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcchhhhH
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSNVYDDR 80 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~~~D~~ 80 (542)
.+|+|+|....|||+|+|+|.+.. |..+.. ...|..+=... ... .+..+.|+||+|..+.. ..+
T Consensus 291 pvV~ImGhvd~GKTSLl~~Lr~~~----v~~~e~-~GIT~~iga~~----v~~--~~~~ItfiDTPGhe~F~-----~m~ 354 (787)
T PRK05306 291 PVVTIMGHVDHGKTSLLDAIRKTN----VAAGEA-GGITQHIGAYQ----VET--NGGKITFLDTPGHEAFT-----AMR 354 (787)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC----cccccc-CceeeeccEEE----EEE--CCEEEEEEECCCCccch-----hHH
Confidence 379999999999999999998643 322110 01111111111 111 23568899999975421 111
Q ss_pred HHHHHHhhhccEEEcCCCCcchHhhhhH
Q 009154 81 IFALATVMSSVLIYNLPETIREADISRL 108 (542)
Q Consensus 81 IFaLa~LLSS~lIYN~~g~I~e~al~~L 108 (542)
.-+....=.-++||.....+..+..+.+
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i 382 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAI 382 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHH
Confidence 1111110012567776555555555544
No 409
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=91.66 E-value=0.14 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999984
No 410
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=91.65 E-value=0.14 Score=50.55 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 411
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.64 E-value=0.23 Score=50.11 Aligned_cols=37 Identities=30% Similarity=0.414 Sum_probs=29.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeeccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPV 49 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~ 49 (542)
+++|+|+.+||||+||..++|.. .|..--||+-++.+
T Consensus 36 i~~iiGgSGsGKStlLr~I~Gll-----------~P~~GeI~i~G~~i 72 (263)
T COG1127 36 ILAILGGSGSGKSTLLRLILGLL-----------RPDKGEILIDGEDI 72 (263)
T ss_pred EEEEECCCCcCHHHHHHHHhccC-----------CCCCCeEEEcCcch
Confidence 68999999999999999999974 35555577665543
No 412
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=91.63 E-value=0.36 Score=46.20 Aligned_cols=58 Identities=26% Similarity=0.180 Sum_probs=38.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.++|..++|||+|++++.... |.-. ...|.|--. ..++ ..++..+.+-+.||.|...
T Consensus 6 i~~vG~~~vGKTsli~~~~~~~----f~~~---~~~t~~~~~-~~~~--~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 6 CVVVGDGAVGKTCLLICYTTNA----FPKE---YIPTVFDNY-SAQT--AVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCcC---CCCceEeee-EEEE--EECCEEEEEEEEECCCchh
Confidence 7899999999999999998643 5311 123444322 2222 2356778999999999643
No 413
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.63 E-value=0.15 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 32 ITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999973
No 414
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=91.62 E-value=0.15 Score=50.55 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 415
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=91.62 E-value=0.14 Score=51.02 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 416
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=91.61 E-value=0.15 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.603 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 29 VVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 417
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=91.60 E-value=0.15 Score=51.86 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 48 ~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 48 ITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 418
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.58 E-value=0.15 Score=52.12 Aligned_cols=22 Identities=45% Similarity=0.454 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 419
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=91.58 E-value=0.36 Score=54.85 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|...+|||+|+|+|.+.
T Consensus 88 p~V~I~Ghvd~GKTSLl~~l~~~ 110 (587)
T TIGR00487 88 PVVTIMGHVDHGKTSLLDSIRKT 110 (587)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC
Confidence 37999999999999999999875
No 420
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=91.57 E-value=0.15 Score=51.11 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 421
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=91.57 E-value=0.15 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 35 ITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 422
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=91.57 E-value=0.15 Score=51.06 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 423
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=91.54 E-value=0.3 Score=48.59 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=38.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|..++|||.|++++.+.. |.- ...|+....+ ..++ ..++..+.+-+.||.|..
T Consensus 4 IvvvGd~~vGKTsLi~~~~~~~----f~~--~y~pTi~~~~--~~~~--~~~~~~v~L~iwDt~G~e 60 (222)
T cd04173 4 IVVVGDAECGKTALLQVFAKDA----YPG--SYVPTVFENY--TASF--EIDKRRIELNMWDTSGSS 60 (222)
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCC--ccCCccccce--EEEE--EECCEEEEEEEEeCCCcH
Confidence 6899999999999999999743 542 1123222222 2222 235677889999999954
No 424
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=91.52 E-value=0.17 Score=50.79 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 24 i~~l~G~nGsGKSTLl~~l~Gl 45 (248)
T PRK03695 24 ILHLVGPNGAGKSTLLARMAGL 45 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999986
No 425
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.51 E-value=0.15 Score=52.39 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl 56 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINAL 56 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 426
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=91.50 E-value=0.15 Score=50.31 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 427
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=91.50 E-value=0.15 Score=51.44 Aligned_cols=22 Identities=45% Similarity=0.686 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~ 53 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 428
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.50 E-value=0.15 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~ 57 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALL 57 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999973
No 429
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.49 E-value=0.24 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+++|+.++||||||+.+.|..
T Consensus 31 iv~llG~NGaGKTTlLkti~Gl~ 53 (237)
T COG0410 31 IVALLGRNGAGKTTLLKTIMGLV 53 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999973
No 430
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=91.47 E-value=0.5 Score=51.21 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+++|+..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~ 23 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHD 23 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHH
Confidence 4899999999999999999864
No 431
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.46 E-value=0.17 Score=47.78 Aligned_cols=22 Identities=50% Similarity=0.788 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999996
No 432
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.44 E-value=0.29 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.++++||.++||||||+.|+|..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999973
No 433
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=91.41 E-value=0.49 Score=47.08 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 009154 3 IQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg 22 (542)
|+|+|...+|||+|++.+..
T Consensus 2 v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 2 VAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999985
No 434
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=91.40 E-value=0.16 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 52 ~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 52 VTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 435
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=91.40 E-value=0.16 Score=52.66 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++||.++||||||+.|.|.
T Consensus 21 ~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 21 VFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 436
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.39 E-value=0.16 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||++++.|++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 437
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.38 E-value=0.16 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 8 ~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 8 LLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 438
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=91.37 E-value=0.17 Score=49.57 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 439
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.36 E-value=0.16 Score=50.84 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 33 ~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 33 VTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999986
No 440
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.35 E-value=0.15 Score=52.39 Aligned_cols=22 Identities=45% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|++.|.|.
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl 55 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGL 55 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 441
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=91.35 E-value=0.16 Score=49.81 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 442
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.35 E-value=0.16 Score=50.50 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|++|+||.++||||||..|-|.
T Consensus 29 v~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCc
Confidence 7899999999999999999997
No 443
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=91.33 E-value=0.16 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 29 ~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 29 VTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 444
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.31 E-value=0.16 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 31 VTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 445
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.30 E-value=0.3 Score=47.57 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=27.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVE 50 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~ 50 (542)
||||+|..+||||++|..+--.. .|+.--||.-++-+.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE-----------~P~~G~I~v~geei~ 71 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLE-----------KPSAGSIRVNGEEIR 71 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhc-----------CCCCceEEECCeEEE
Confidence 89999999999999998765331 356666776554433
No 446
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=91.29 E-value=0.17 Score=50.38 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 49 ~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 49 IVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 447
>PLN00223 ADP-ribosylation factor; Provisional
Probab=91.28 E-value=0.43 Score=45.40 Aligned_cols=52 Identities=25% Similarity=0.184 Sum_probs=35.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.++|+.++|||+|++++.... |. . . ..|.|+-.. .+ +.+++.+-+.||+|.
T Consensus 20 i~ivG~~~~GKTsl~~~l~~~~----~~--~-~-~pt~g~~~~--~~----~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 20 ILMVGLDAAGKTTILYKLKLGE----IV--T-T-IPTIGFNVE--TV----EYKNISFTVWDVGGQ 71 (181)
T ss_pred EEEECCCCCCHHHHHHHHccCC----Cc--c-c-cCCcceeEE--EE----EECCEEEEEEECCCC
Confidence 7899999999999999997532 42 1 1 234454332 11 235688999999994
No 448
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=91.28 E-value=0.17 Score=48.92 Aligned_cols=22 Identities=45% Similarity=0.682 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999999996
No 449
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.27 E-value=0.16 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999997
No 450
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=91.25 E-value=0.16 Score=51.47 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~G~ 56 (265)
T PRK10253 35 FTAIIGPNGCGKSTLLRTLSRL 56 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 451
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.22 E-value=0.17 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 452
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=91.20 E-value=0.17 Score=50.22 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 453
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.17 E-value=0.17 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 454
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.17 E-value=0.17 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 48 ~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 48 IIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999986
No 455
>PRK00007 elongation factor G; Reviewed
Probab=91.12 E-value=0.46 Score=55.05 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|.|+|+..
T Consensus 12 ni~iiG~~~~GKsTL~~~ll~~ 33 (693)
T PRK00007 12 NIGIMAHIDAGKTTTTERILFY 33 (693)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999853
No 456
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=91.11 E-value=0.52 Score=54.00 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|...+|||+|+|+|+..
T Consensus 27 i~iiGh~~~GKSTL~~~Ll~~ 47 (632)
T PRK05506 27 FITCGSVDDGKSTLIGRLLYD 47 (632)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999999975
No 457
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=91.11 E-value=0.17 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++|+.++||||||+.|.|.
T Consensus 32 ~~~l~G~NGaGKSTLl~~l~Gl 53 (303)
T TIGR01288 32 CFGLLGPNGAGKSTIARMLLGM 53 (303)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 458
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.11 E-value=0.17 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 35 WTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999996
No 459
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.10 E-value=0.13 Score=47.95 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|+|+.+||||||++.|...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999964
No 460
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.10 E-value=0.16 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|+.+||||||++.|.+.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988765
No 461
>PLN02796 D-glycerate 3-kinase
Probab=91.06 E-value=0.18 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+++||||||++.|.+.
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6999999999999999999986
No 462
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=91.05 E-value=0.83 Score=51.32 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=48.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCc---------------CccceEEeeecccccccCCCceeEEEeecC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRD---------------TKTKGIWVWGNPVEMEIDGSRTSVFYLDTE 66 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~---------------~~TkGIWmW~~p~~~~~~g~~~~vlllDTE 66 (542)
-|+|+|...+|||+|.++|+.... .-+..++++ -.++||=+-....... ..+..+-++||+
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g--~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~--~~~~~inliDTP 87 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGG--AIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFP--YRDCLINLLDTP 87 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--CccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEE--ECCEEEEEEECC
Confidence 489999999999999999985321 011001110 1123443333222222 346788999999
Q ss_pred CcccccCcchhhhHHHHHHHhhhccEEEcCCCCc
Q 009154 67 GFESIGKSNVYDDRIFALATVMSSVLIYNLPETI 100 (542)
Q Consensus 67 G~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I 100 (542)
|..+.. .+ ..-+|...=+-++|+.....+
T Consensus 88 G~~df~----~~-~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 88 GHEDFS----ED-TYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred CchhhH----HH-HHHHHHHCCEEEEEEecCCCC
Confidence 975422 11 122344433334566654444
No 463
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=91.04 E-value=0.18 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+||+.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 464
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=91.02 E-value=0.19 Score=49.28 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 33 ~~~I~G~nGsGKStLl~~l~G~ 54 (220)
T TIGR02982 33 IVILTGPSGSGKTTLLTLIGGL 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 465
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=90.97 E-value=0.18 Score=51.04 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 38 ~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 38 ITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 466
>PTZ00301 uridine kinase; Provisional
Probab=90.96 E-value=0.18 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg 22 (542)
.+|+|.|+.+||||||.+.|..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 4899999999999999988764
No 467
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.94 E-value=0.2 Score=48.02 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.++|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999886
No 468
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=90.94 E-value=0.64 Score=54.14 Aligned_cols=98 Identities=20% Similarity=0.278 Sum_probs=49.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----CCCeee-eec-CcCccceEEeeecccc--cccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC-----DEGFGV-GHM-RDTKTKGIWVWGNPVE--MEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~-----~~gF~v-g~~-~~~~TkGIWmW~~p~~--~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|+|+|...+|||+|.++|+.... ..|=.. ... .+-..+|+=+-..... ...++.+..+.++||+|..+..
T Consensus 21 nI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~ 100 (720)
T TIGR00490 21 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVDFG 100 (720)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccccH
Confidence 489999999999999999985310 000000 000 0000122221111111 0123567889999999986522
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHh
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREAD 104 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~a 104 (542)
+...-++...=.-++|+.....++.+.
T Consensus 101 -----~~~~~al~~aD~~llVvda~~g~~~~t 127 (720)
T TIGR00490 101 -----GDVTRAMRAVDGAIVVVCAVEGVMPQT 127 (720)
T ss_pred -----HHHHHHHHhcCEEEEEEecCCCCCccH
Confidence 222334444223356666655554443
No 469
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.93 E-value=0.17 Score=44.27 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.|.|+++|||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 470
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=90.93 E-value=0.19 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999973
No 471
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.92 E-value=0.18 Score=51.77 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 67 ~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 67 VTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999995
No 472
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.90 E-value=0.19 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 35 WLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 473
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=90.89 E-value=0.19 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.305 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 52 ~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 52 VIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 474
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.89 E-value=0.19 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 49 ~~~I~G~nGsGKSTLl~~l~Gl 70 (276)
T PRK14271 49 VTSLMGPTGSGKTTFLRTLNRM 70 (276)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 475
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.87 E-value=0.19 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 44 ~~~i~G~nGsGKSTLl~~l~Gl 65 (265)
T PRK14252 44 VTALIGPSGCGKSTFLRCFNRM 65 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999986
No 476
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.86 E-value=0.22 Score=42.93 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.+.++||.+||||+++..|++..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 4 VILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhcc
Confidence 57899999999999999999863
No 477
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.86 E-value=0.19 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 54 ~~~I~G~nGsGKSTLl~~L~Gl 75 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGL 75 (320)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 478
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=90.84 E-value=0.28 Score=55.78 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccc----eEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 7 GPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTK----GIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 7 G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~Tk----GIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|..++|||+|+|+|.|.. +.+++.. ..|. |.+.+ ++..+.++||+|..+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~----~~v~n~p-G~Tv~~~~~~i~~----------~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN----QTVGNWP-GVTVEKKEGKLGF----------QGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCC----CeecCCC-CeEEEEEEEEEEE----------CCeEEEEEECCCcccc
Confidence 889999999999999863 5555421 1221 22221 2345789999998764
No 479
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=90.84 E-value=0.2 Score=48.40 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 480
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=90.78 E-value=0.19 Score=50.49 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 29 LTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 6899999999999999999996
No 481
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=90.76 E-value=0.19 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||||++.|.|..
T Consensus 33 i~~iiG~nGsGKSTLlk~L~Gl~ 55 (343)
T PRK11153 33 IFGVIGASGAGKSTLIRCINLLE 55 (343)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 482
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.74 E-value=0.19 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 33 KTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 483
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=90.73 E-value=0.23 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+||||++.+.|...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999864
No 484
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.73 E-value=0.2 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 35 ~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 35 VTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 485
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.70 E-value=0.19 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.|+|+|..++|||+|+|.+.|..
T Consensus 34 FvtViGsNGAGKSTlln~iaG~l 56 (263)
T COG1101 34 FVTVIGSNGAGKSTLLNAIAGDL 56 (263)
T ss_pred eEEEEcCCCccHHHHHHHhhCcc
Confidence 58999999999999999999973
No 486
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.67 E-value=0.21 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 35 ~~~I~G~nGsGKSTLl~~l~Gl~ 57 (261)
T PRK14258 35 VTAIIGPSGCGKSTFLKCLNRMN 57 (261)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999974
No 487
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=90.66 E-value=0.27 Score=40.21 Aligned_cols=46 Identities=24% Similarity=0.140 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
++.+.|..++|||++.+.|.......|+++.--. .++++|++|..+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~-----------------------d~iivD~~~~~~ 46 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID-----------------------DYVLIDTPPGLG 46 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC-----------------------CEEEEeCCCCcc
Confidence 4788999999999999999875333455543321 588899998654
No 488
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=0.37 Score=45.38 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=43.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
+-|+|+.+||||-||.++...+ |. ...++|-||-.-+.-+.. .|+.+.+-+-||-|-
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~k----fk---DdssHTiGveFgSrIinV--GgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENK----FK---DDSSHTIGVEFGSRIVNV--GGKTVKLQIWDTAGQ 68 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhh----hc---ccccceeeeeecceeeee--cCcEEEEEEeecccH
Confidence 5689999999999999998653 54 223778898876654433 467788889999994
No 489
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.63 E-value=0.21 Score=50.56 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~ 60 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLI 60 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 490
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=90.61 E-value=0.24 Score=48.63 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=24.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH 33 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~ 33 (542)
++|+|.|+.+||||++++.|.+. ||.|-+
T Consensus 6 ~~igitG~igsGKSt~~~~l~~~----g~~v~d 34 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAEM----GCELFE 34 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHHC----CCeEEe
Confidence 36999999999999999999874 666543
No 491
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=90.59 E-value=0.21 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 67 ~~~I~G~nGsGKSTLl~~l~Gl 88 (285)
T PRK14254 67 VTAMIGPSGCGKSTFLRCINRM 88 (285)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 492
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=90.56 E-value=0.21 Score=51.41 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||+|++.|.|..
T Consensus 35 ~~~i~G~nGaGKSTLl~~l~Gl~ 57 (287)
T PRK13637 35 FVGLIGHTGSGKSTLIQHLNGLL 57 (287)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999973
No 493
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=90.55 E-value=0.21 Score=50.83 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|.|.
T Consensus 53 ~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 53 VTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999996
No 494
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=90.52 E-value=0.21 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|+|.
T Consensus 65 ~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 495
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=90.48 E-value=0.21 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||||++.|.+.
T Consensus 35 iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 35 IVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=90.48 E-value=0.24 Score=43.99 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+++++||.++|||+|++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999986
No 497
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=90.39 E-value=0.55 Score=44.98 Aligned_cols=57 Identities=28% Similarity=0.240 Sum_probs=37.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.++|..++|||+|++++.+.. |.- .. ..|.|.-. ... ...++..+.+-+.||.|..
T Consensus 8 ivvvGd~~vGKTsli~~~~~~~----f~~--~~-~pT~~~~~-~~~--~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 8 IVVVGDSQCGKTALLHVFAKDC----FPE--NY-VPTVFENY-TAS--FEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC--cc-CCceeeee-EEE--EEECCEEEEEEEEECCCch
Confidence 7899999999999999998753 531 11 12323211 112 2235677899999999853
No 498
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.34 E-value=0.86 Score=42.77 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
++.++|+.++|||++.-.+...-...|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v 31 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKV 31 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 688999999999999877664322235544
No 499
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.32 E-value=0.23 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+|++.|+|.
T Consensus 49 ~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 6899999999999999999996
No 500
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=90.28 E-value=0.22 Score=53.28 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++||||||+.|.|..
T Consensus 31 ~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
Done!