Query 009154
Match_columns 542
No_of_seqs 254 out of 1199
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 20:02:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ido_A Atlastin-1; GTPase, GTP 100.0 2.3E-73 7.8E-78 609.2 33.9 336 1-346 68-439 (457)
2 3q5d_A Atlastin-1; G protein, 100.0 2.1E-66 7.3E-71 557.4 28.8 337 1-347 68-440 (447)
3 1f5n_A Interferon-induced guan 100.0 3.4E-65 1.2E-69 564.3 37.3 391 1-401 39-462 (592)
4 3lxw_A GTPase IMAP family memb 97.9 3.6E-05 1.2E-09 75.6 10.3 59 2-73 23-85 (247)
5 2xtp_A GTPase IMAP family memb 97.8 0.00014 4.7E-09 71.2 11.9 59 2-73 24-86 (260)
6 3lxx_A GTPase IMAP family memb 97.7 0.0001 3.5E-09 71.2 10.2 60 2-74 31-94 (239)
7 3iev_A GTP-binding protein ERA 97.7 0.00019 6.3E-09 72.9 11.4 58 2-72 12-73 (308)
8 3pqc_A Probable GTP-binding pr 97.6 0.00029 1E-08 64.4 10.2 57 2-71 25-81 (195)
9 4dhe_A Probable GTP-binding pr 97.5 0.0002 7E-09 67.5 8.6 63 2-72 31-93 (223)
10 1wf3_A GTP-binding protein; GT 97.5 0.00051 1.7E-08 69.6 11.9 56 2-71 9-68 (301)
11 2qu8_A Putative nucleolar GTP- 97.4 0.00065 2.2E-08 64.9 11.0 58 2-70 31-88 (228)
12 1svi_A GTP-binding protein YSX 97.4 0.00049 1.7E-08 63.2 9.6 59 2-74 25-85 (195)
13 1ega_A Protein (GTP-binding pr 97.4 0.00022 7.7E-09 72.1 7.3 54 2-69 10-67 (301)
14 3t5d_A Septin-7; GTP-binding p 97.4 0.00016 5.5E-09 71.8 5.5 64 3-71 11-78 (274)
15 2dyk_A GTP-binding protein; GT 97.4 0.0004 1.4E-08 61.4 7.6 60 2-71 3-62 (161)
16 1h65_A Chloroplast outer envel 97.3 0.0002 7E-09 70.8 5.3 61 2-72 41-101 (270)
17 3def_A T7I23.11 protein; chlor 97.1 0.00053 1.8E-08 67.6 6.1 61 2-72 38-98 (262)
18 1z0j_A RAB-22, RAS-related pro 97.1 0.00071 2.4E-08 60.2 6.3 60 2-70 8-67 (170)
19 1ek0_A Protein (GTP-binding pr 97.1 0.00073 2.5E-08 60.0 6.2 60 2-70 5-64 (170)
20 3k53_A Ferrous iron transport 97.1 0.0009 3.1E-08 66.1 7.4 59 2-71 5-63 (271)
21 3iby_A Ferrous iron transport 97.1 0.001 3.5E-08 65.7 7.7 60 2-72 3-62 (256)
22 3i8s_A Ferrous iron transport 97.0 0.0032 1.1E-07 62.6 11.0 60 2-72 5-64 (274)
23 3tw8_B RAS-related protein RAB 97.0 0.00085 2.9E-08 60.3 6.2 59 3-70 12-70 (181)
24 1wms_A RAB-9, RAB9, RAS-relate 97.0 0.00068 2.3E-08 61.0 5.6 59 2-69 9-67 (177)
25 2erx_A GTP-binding protein DI- 97.0 0.00084 2.9E-08 59.7 6.1 57 2-70 5-63 (172)
26 3clv_A RAB5 protein, putative; 97.0 0.00094 3.2E-08 61.0 6.5 23 2-24 9-31 (208)
27 1puj_A YLQF, conserved hypothe 97.0 0.00078 2.7E-08 67.7 6.5 60 2-74 122-181 (282)
28 1z2a_A RAS-related protein RAB 97.0 0.001 3.5E-08 59.1 6.4 60 2-70 7-66 (168)
29 2wji_A Ferrous iron transport 97.0 0.0014 4.6E-08 59.2 7.3 55 2-71 5-63 (165)
30 1r2q_A RAS-related protein RAB 97.0 0.00094 3.2E-08 59.3 6.1 60 2-70 8-67 (170)
31 2g6b_A RAS-related protein RAB 97.0 0.00073 2.5E-08 61.0 5.4 61 2-70 12-72 (180)
32 2y8e_A RAB-protein 6, GH09086P 97.0 0.00084 2.9E-08 60.3 5.7 60 2-70 16-75 (179)
33 1vg8_A RAS-related protein RAB 97.0 0.0012 4.1E-08 61.2 6.9 60 2-70 10-69 (207)
34 1z08_A RAS-related protein RAB 96.9 0.001 3.6E-08 59.2 6.1 60 2-70 8-67 (170)
35 3a1s_A Iron(II) transport prot 96.9 0.0015 5.1E-08 64.5 7.7 60 2-72 7-66 (258)
36 1z0f_A RAB14, member RAS oncog 96.9 0.00091 3.1E-08 60.0 5.6 59 2-69 17-75 (179)
37 2nzj_A GTP-binding protein REM 96.9 0.0011 3.8E-08 59.3 6.1 59 2-70 6-64 (175)
38 3q85_A GTP-binding protein REM 96.9 0.00088 3E-08 59.8 5.3 59 3-70 5-63 (169)
39 1kao_A RAP2A; GTP-binding prot 96.9 0.0013 4.5E-08 58.0 6.1 58 2-69 5-62 (167)
40 2gj8_A MNME, tRNA modification 96.9 0.0013 4.4E-08 60.1 6.2 58 2-70 6-64 (172)
41 2oil_A CATX-8, RAS-related pro 96.9 0.0012 4.1E-08 60.7 6.0 60 2-70 27-86 (193)
42 1g16_A RAS-related protein SEC 96.9 0.00092 3.1E-08 59.5 5.0 60 2-70 5-64 (170)
43 3bc1_A RAS-related protein RAB 96.8 0.0012 4E-08 60.1 5.7 61 2-69 13-81 (195)
44 1c1y_A RAS-related protein RAP 96.8 0.0023 7.8E-08 56.7 7.0 58 3-70 6-63 (167)
45 3t34_A Dynamin-related protein 96.8 0.00088 3E-08 69.1 4.8 22 2-23 36-57 (360)
46 2j69_A Bacterial dynamin-like 96.8 0.0016 5.5E-08 73.5 7.1 22 2-23 71-92 (695)
47 1u8z_A RAS-related protein RAL 96.8 0.0017 5.8E-08 57.3 5.9 57 3-69 7-63 (168)
48 1x3s_A RAS-related protein RAB 96.7 0.0019 6.7E-08 58.9 6.4 60 2-70 17-76 (195)
49 2fg5_A RAB-22B, RAS-related pr 96.7 0.0019 6.6E-08 59.6 6.3 60 2-70 25-84 (192)
50 2x2e_A Dynamin-1; nitration, h 96.7 0.0007 2.4E-08 69.8 3.7 23 2-24 33-55 (353)
51 1jwy_B Dynamin A GTPase domain 96.7 0.0018 6.1E-08 64.8 6.5 23 2-24 26-48 (315)
52 1zbd_A Rabphilin-3A; G protein 96.7 0.0017 5.9E-08 60.1 5.9 59 3-70 11-69 (203)
53 2bme_A RAB4A, RAS-related prot 96.7 0.0014 4.9E-08 59.5 5.3 59 2-69 12-70 (186)
54 2lkc_A Translation initiation 96.7 0.0032 1.1E-07 56.5 7.5 58 2-70 10-67 (178)
55 1ky3_A GTP-binding protein YPT 96.7 0.0019 6.4E-08 58.1 5.9 59 2-69 10-69 (182)
56 2wjg_A FEOB, ferrous iron tran 96.7 0.0035 1.2E-07 57.1 7.7 59 2-71 9-67 (188)
57 3oes_A GTPase rhebl1; small GT 96.7 0.0023 8E-08 59.4 6.5 58 3-70 27-84 (201)
58 1z06_A RAS-related protein RAB 96.7 0.0016 5.4E-08 59.8 5.2 60 2-70 22-81 (189)
59 3cph_A RAS-related protein SEC 96.7 0.0017 5.8E-08 60.4 5.5 60 2-70 22-81 (213)
60 2efe_B Small GTP-binding prote 96.7 0.0016 5.4E-08 58.8 5.0 59 3-70 15-73 (181)
61 2gf9_A RAS-related protein RAB 96.7 0.0021 7.2E-08 59.0 5.9 60 2-70 24-83 (189)
62 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0093 3.2E-07 62.0 11.4 54 2-70 181-238 (364)
63 2ce2_X GTPase HRAS; signaling 96.6 0.0026 9E-08 55.8 6.2 58 3-70 6-63 (166)
64 2cxx_A Probable GTP-binding pr 96.6 0.0018 6.2E-08 58.9 5.2 54 2-70 3-56 (190)
65 2aka_B Dynamin-1; fusion prote 96.6 0.0012 4.1E-08 65.4 4.2 23 2-24 28-50 (299)
66 3tkl_A RAS-related protein RAB 96.6 0.0021 7.1E-08 58.9 5.5 60 2-70 18-77 (196)
67 2qag_A Septin-2, protein NEDD5 96.6 0.0014 4.9E-08 68.0 4.8 64 3-71 40-108 (361)
68 2e87_A Hypothetical protein PH 96.6 0.011 3.9E-07 60.7 11.6 58 2-70 169-226 (357)
69 2il1_A RAB12; G-protein, GDP, 96.6 0.0018 6.1E-08 59.9 4.9 58 3-69 29-86 (192)
70 2bov_A RAla, RAS-related prote 96.6 0.0027 9.3E-08 58.6 6.1 59 2-70 16-74 (206)
71 1r8s_A ADP-ribosylation factor 96.6 0.0021 7.1E-08 57.0 5.1 55 2-70 2-56 (164)
72 2fn4_A P23, RAS-related protei 96.6 0.003 1E-07 56.6 6.2 59 2-70 11-69 (181)
73 2bcg_Y Protein YP2, GTP-bindin 96.6 0.0027 9.3E-08 59.0 6.1 60 2-70 10-69 (206)
74 4a9a_A Ribosome-interacting GT 96.6 0.0016 5.5E-08 68.3 4.9 53 3-69 75-130 (376)
75 1upt_A ARL1, ADP-ribosylation 96.5 0.0036 1.2E-07 55.7 6.5 55 2-70 9-63 (171)
76 1zj6_A ADP-ribosylation factor 96.5 0.0037 1.3E-07 57.2 6.6 54 2-70 18-72 (187)
77 4dsu_A GTPase KRAS, isoform 2B 96.5 0.0037 1.3E-07 56.6 6.5 59 2-70 6-64 (189)
78 2f9l_A RAB11B, member RAS onco 96.5 0.0023 8E-08 59.4 5.2 60 2-70 7-66 (199)
79 3q72_A GTP-binding protein RAD 96.5 0.0018 6E-08 57.6 4.1 58 2-70 4-61 (166)
80 2a9k_A RAS-related protein RAL 96.5 0.0034 1.2E-07 56.6 6.1 59 2-70 20-78 (187)
81 2qpt_A EH domain-containing pr 96.5 0.0064 2.2E-07 66.8 9.1 23 2-24 67-89 (550)
82 4dcu_A GTP-binding protein ENG 96.5 0.004 1.4E-07 66.5 7.3 58 2-70 25-83 (456)
83 3t1o_A Gliding protein MGLA; G 96.5 0.0039 1.3E-07 56.8 6.2 62 3-70 17-86 (198)
84 2h17_A ADP-ribosylation factor 96.5 0.0047 1.6E-07 56.2 6.8 54 2-70 23-77 (181)
85 2gf0_A GTP-binding protein DI- 96.4 0.0028 9.5E-08 58.2 5.2 59 2-70 10-68 (199)
86 2a5j_A RAS-related protein RAB 96.4 0.0042 1.4E-07 57.1 6.4 59 3-70 24-82 (191)
87 3t5g_A GTP-binding protein RHE 96.4 0.0036 1.2E-07 56.6 5.8 59 2-70 8-66 (181)
88 2p5s_A RAS and EF-hand domain 96.4 0.0026 9E-08 59.0 5.0 60 2-70 30-89 (199)
89 1oix_A RAS-related protein RAB 96.4 0.0034 1.2E-07 58.2 5.7 60 2-70 31-90 (191)
90 4bas_A ADP-ribosylation factor 96.4 0.0033 1.1E-07 57.6 5.5 57 2-70 19-75 (199)
91 2ew1_A RAS-related protein RAB 96.4 0.0033 1.1E-07 59.2 5.5 59 2-69 28-86 (201)
92 3dz8_A RAS-related protein RAB 96.4 0.0031 1.1E-07 58.0 5.3 57 3-68 26-82 (191)
93 2f7s_A C25KG, RAS-related prot 96.4 0.0032 1.1E-07 59.0 5.3 60 2-68 27-94 (217)
94 2zej_A Dardarin, leucine-rich 96.3 0.0035 1.2E-07 57.5 5.3 64 2-70 4-68 (184)
95 2o52_A RAS-related protein RAB 96.3 0.0022 7.7E-08 59.7 4.0 59 3-70 28-86 (200)
96 2ged_A SR-beta, signal recogni 96.3 0.002 6.7E-08 59.1 3.6 54 2-71 50-104 (193)
97 1mky_A Probable GTP-binding pr 96.3 0.0026 8.8E-08 67.6 4.8 54 2-69 182-239 (439)
98 3zvr_A Dynamin-1; hydrolase, D 96.3 0.002 6.8E-08 73.4 3.9 23 2-24 53-75 (772)
99 4djt_A GTP-binding nuclear pro 96.3 0.0045 1.5E-07 58.1 5.8 58 3-70 14-73 (218)
100 2atv_A RERG, RAS-like estrogen 96.3 0.0053 1.8E-07 56.7 6.2 58 3-70 31-88 (196)
101 1m2o_B GTP-binding protein SAR 96.3 0.0065 2.2E-07 56.1 6.8 54 2-70 25-79 (190)
102 3ec1_A YQEH GTPase; atnos1, at 96.3 0.0049 1.7E-07 64.2 6.5 60 2-71 164-225 (369)
103 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0046 1.6E-07 55.8 5.5 59 2-70 7-65 (186)
104 2fv8_A H6, RHO-related GTP-bin 96.2 0.0042 1.4E-07 58.0 5.3 59 2-70 27-85 (207)
105 2yc2_C IFT27, small RAB-relate 96.2 0.0017 5.7E-08 60.0 2.5 61 2-69 22-84 (208)
106 3cpj_B GTP-binding protein YPT 96.2 0.005 1.7E-07 58.3 5.9 59 3-70 16-74 (223)
107 3cnl_A YLQF, putative uncharac 96.2 0.0023 7.9E-08 63.5 3.5 58 2-72 101-158 (262)
108 1ksh_A ARF-like protein 2; sma 96.2 0.0058 2E-07 55.6 6.0 54 2-69 20-73 (186)
109 2hxs_A RAB-26, RAS-related pro 96.2 0.0017 5.7E-08 58.5 2.3 61 2-70 8-68 (178)
110 1pui_A ENGB, probable GTP-bind 96.2 0.0099 3.4E-07 55.2 7.7 22 2-23 28-49 (210)
111 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0073 2.5E-07 55.1 6.6 58 3-70 10-67 (184)
112 2hjg_A GTP-binding protein ENG 96.2 0.0071 2.4E-07 64.1 7.4 58 2-70 5-63 (436)
113 3b1v_A Ferrous iron uptake tra 96.2 0.004 1.4E-07 62.1 5.2 58 2-71 5-62 (272)
114 3kkq_A RAS-related protein M-R 96.2 0.0072 2.5E-07 54.7 6.5 59 2-70 20-78 (183)
115 2qm8_A GTPase/ATPase; G protei 96.2 0.0028 9.5E-08 65.2 4.1 22 2-23 57-78 (337)
116 2fu5_C RAS-related protein RAB 96.2 0.0021 7E-08 58.4 2.8 59 3-70 11-69 (183)
117 1wxq_A GTP-binding protein; st 96.2 0.0043 1.5E-07 65.3 5.6 65 2-70 2-83 (397)
118 1mky_A Probable GTP-binding pr 96.2 0.015 5E-07 61.7 9.7 54 2-70 3-61 (439)
119 3con_A GTPase NRAS; structural 96.2 0.0055 1.9E-07 55.9 5.6 58 2-69 23-80 (190)
120 3reg_A RHO-like small GTPase; 96.2 0.0068 2.3E-07 55.7 6.3 59 2-70 25-83 (194)
121 1zd9_A ADP-ribosylation factor 96.2 0.0061 2.1E-07 55.9 5.9 55 2-69 24-78 (188)
122 3ihw_A Centg3; RAS, centaurin, 96.2 0.0073 2.5E-07 55.6 6.4 58 2-70 22-79 (184)
123 2www_A Methylmalonic aciduria 96.2 0.0025 8.6E-08 65.8 3.6 22 2-23 76-97 (349)
124 3gee_A MNME, tRNA modification 96.2 0.0025 8.5E-08 68.8 3.6 59 2-70 235-293 (476)
125 1f6b_A SAR1; gtpases, N-termin 96.2 0.0052 1.8E-07 57.3 5.4 54 2-70 27-81 (198)
126 4dcu_A GTP-binding protein ENG 96.1 0.013 4.3E-07 62.5 9.0 100 2-111 197-302 (456)
127 2x77_A ADP-ribosylation factor 96.1 0.0078 2.7E-07 55.0 6.4 55 2-70 24-78 (189)
128 3qq5_A Small GTP-binding prote 96.1 0.0062 2.1E-07 64.8 6.4 62 2-72 36-97 (423)
129 1moz_A ARL1, ADP-ribosylation 96.1 0.0064 2.2E-07 54.9 5.6 55 2-70 20-74 (183)
130 2hjg_A GTP-binding protein ENG 96.1 0.0098 3.3E-07 63.0 7.8 94 2-106 177-277 (436)
131 1nrj_B SR-beta, signal recogni 96.1 0.0031 1.1E-07 59.2 3.5 54 2-70 14-67 (218)
132 2h57_A ADP-ribosylation factor 96.1 0.0054 1.9E-07 56.2 5.1 57 2-70 23-79 (190)
133 3h2y_A GTPase family protein; 96.1 0.0057 2E-07 63.7 5.8 60 2-71 162-224 (368)
134 2hup_A RAS-related protein RAB 96.1 0.0043 1.5E-07 57.9 4.4 59 2-69 31-89 (201)
135 3c5c_A RAS-like protein 12; GD 96.0 0.0081 2.8E-07 55.2 5.9 58 3-70 24-81 (187)
136 2gco_A H9, RHO-related GTP-bin 95.9 0.0065 2.2E-07 56.5 5.0 58 3-70 28-85 (201)
137 1gwn_A RHO-related GTP-binding 95.9 0.011 3.9E-07 55.5 6.5 58 3-70 31-88 (205)
138 3geh_A MNME, tRNA modification 95.9 0.0019 6.5E-08 69.4 1.3 59 2-70 226-284 (462)
139 2atx_A Small GTP binding prote 95.9 0.009 3.1E-07 54.8 5.6 59 2-70 20-78 (194)
140 1jal_A YCHF protein; nucleotid 95.9 0.0072 2.5E-07 63.1 5.4 64 2-70 4-78 (363)
141 2fh5_B SR-beta, signal recogni 95.8 0.014 4.8E-07 54.4 6.9 57 2-70 9-66 (214)
142 1xzp_A Probable tRNA modificat 95.8 0.008 2.8E-07 64.9 5.8 58 2-69 245-302 (482)
143 2iwr_A Centaurin gamma 1; ANK 95.8 0.0072 2.5E-07 54.4 4.6 56 3-69 10-65 (178)
144 1fzq_A ADP-ribosylation factor 95.8 0.013 4.5E-07 53.5 6.4 55 2-70 18-72 (181)
145 2q3h_A RAS homolog gene family 95.8 0.011 3.8E-07 54.5 5.9 59 2-70 22-80 (201)
146 3q3j_B RHO-related GTP-binding 95.8 0.012 4.2E-07 55.5 6.2 58 3-70 30-87 (214)
147 2cjw_A GTP-binding protein GEM 95.7 0.0056 1.9E-07 56.9 3.5 60 3-70 9-68 (192)
148 2j0v_A RAC-like GTP-binding pr 95.7 0.012 4E-07 54.9 5.6 58 3-70 12-69 (212)
149 3cbq_A GTP-binding protein REM 95.7 0.0051 1.7E-07 57.3 3.1 60 2-70 25-84 (195)
150 3bwd_D RAC-like GTP-binding pr 95.6 0.0081 2.8E-07 54.1 4.2 59 2-70 10-68 (182)
151 2qag_C Septin-7; cell cycle, c 95.6 0.015 5.2E-07 61.7 6.8 66 3-71 34-101 (418)
152 1tq4_A IIGP1, interferon-induc 95.6 0.013 4.5E-07 62.1 6.3 22 2-23 71-92 (413)
153 2b6h_A ADP-ribosylation factor 95.6 0.016 5.5E-07 53.5 6.1 55 2-70 31-85 (192)
154 2j1l_A RHO-related GTP-binding 95.5 0.011 3.9E-07 55.5 5.0 59 2-70 36-94 (214)
155 2g3y_A GTP-binding protein GEM 95.5 0.0079 2.7E-07 57.5 3.8 60 3-70 40-99 (211)
156 4gzl_A RAS-related C3 botulinu 95.5 0.015 5.1E-07 54.3 5.6 59 2-70 32-90 (204)
157 3a00_A Guanylate kinase, GMP k 95.5 0.0043 1.5E-07 57.6 1.8 23 2-24 3-25 (186)
158 3llu_A RAS-related GTP-binding 95.5 0.013 4.3E-07 54.3 5.0 58 2-70 22-81 (196)
159 3l0i_B RAS-related protein RAB 95.5 0.0029 1E-07 58.7 0.6 60 2-70 35-94 (199)
160 2qag_B Septin-6, protein NEDD5 95.4 0.012 4.1E-07 62.7 5.2 62 3-70 45-107 (427)
161 3gj0_A GTP-binding nuclear pro 95.4 0.007 2.4E-07 57.0 3.0 60 2-70 17-76 (221)
162 1kgd_A CASK, peripheral plasma 95.4 0.0069 2.3E-07 56.0 2.9 22 2-23 7-28 (180)
163 2qnr_A Septin-2, protein NEDD5 95.4 0.0098 3.4E-07 60.0 4.1 66 3-70 21-88 (301)
164 1lvg_A Guanylate kinase, GMP k 95.3 0.0049 1.7E-07 58.1 1.7 22 2-23 6-27 (198)
165 3r7w_A Gtpase1, GTP-binding pr 95.3 0.019 6.4E-07 57.9 6.1 59 3-70 6-64 (307)
166 2p67_A LAO/AO transport system 95.2 0.0072 2.5E-07 62.0 2.7 22 2-23 58-79 (341)
167 3sop_A Neuronal-specific septi 95.2 0.009 3.1E-07 59.5 3.2 22 2-23 4-25 (270)
168 1ni3_A YCHF GTPase, YCHF GTP-b 95.1 0.026 8.9E-07 59.4 6.6 65 2-70 22-97 (392)
169 3dpu_A RAB family protein; roc 95.1 0.017 5.9E-07 62.7 5.4 61 3-70 44-110 (535)
170 3p32_A Probable GTPase RV1496/ 95.1 0.012 4.2E-07 60.6 3.9 22 2-23 81-102 (355)
171 2ohf_A Protein OLA1, GTP-bindi 94.9 0.023 8E-07 59.8 5.5 64 2-70 24-98 (396)
172 1lnz_A SPO0B-associated GTP-bi 94.7 0.019 6.7E-07 59.2 4.1 55 3-70 161-218 (342)
173 3c8u_A Fructokinase; YP_612366 94.7 0.015 5.1E-07 54.9 2.9 22 2-23 24-45 (208)
174 2h5e_A Peptide chain release f 94.6 0.045 1.5E-06 59.7 6.8 65 2-70 15-94 (529)
175 3ney_A 55 kDa erythrocyte memb 94.5 0.017 5.7E-07 55.2 2.9 22 2-23 21-42 (197)
176 3tr0_A Guanylate kinase, GMP k 94.5 0.018 6.2E-07 53.4 3.2 22 2-23 9-30 (205)
177 2c78_A Elongation factor TU-A; 94.5 0.02 6.7E-07 60.0 3.7 22 2-23 13-34 (405)
178 3tau_A Guanylate kinase, GMP k 94.5 0.024 8.1E-07 53.6 4.0 23 2-24 10-32 (208)
179 1u0l_A Probable GTPase ENGC; p 94.5 0.027 9.1E-07 56.7 4.5 23 2-24 171-193 (301)
180 4dkx_A RAS-related protein RAB 94.5 0.033 1.1E-06 53.3 5.0 59 3-70 16-74 (216)
181 1ye8_A Protein THEP1, hypothet 94.5 0.02 6.9E-07 53.3 3.3 23 1-23 1-23 (178)
182 1znw_A Guanylate kinase, GMP k 94.4 0.019 6.6E-07 54.0 3.1 23 2-24 22-44 (207)
183 3tif_A Uncharacterized ABC tra 94.4 0.019 6.6E-07 55.8 3.1 23 2-24 33-55 (235)
184 2xex_A Elongation factor G; GT 94.3 0.078 2.7E-06 59.7 8.3 21 2-22 12-32 (693)
185 3sjy_A Translation initiation 94.3 0.1 3.6E-06 54.5 8.7 22 2-23 10-31 (403)
186 2wkq_A NPH1-1, RAS-related C3 94.3 0.049 1.7E-06 54.1 5.9 59 2-70 157-215 (332)
187 3th5_A RAS-related C3 botulinu 93.3 0.0081 2.8E-07 55.8 0.0 59 2-70 32-90 (204)
188 2pcj_A ABC transporter, lipopr 94.2 0.021 7.3E-07 55.0 2.9 23 2-24 32-54 (224)
189 3asz_A Uridine kinase; cytidin 94.1 0.022 7.5E-07 53.3 2.8 22 2-23 8-29 (211)
190 3j2k_7 ERF3, eukaryotic polype 94.0 0.1 3.5E-06 55.4 8.0 22 2-23 19-40 (439)
191 2onk_A Molybdate/tungstate ABC 94.0 0.028 9.7E-07 54.9 3.3 23 2-24 26-48 (240)
192 3o47_A ADP-ribosylation factor 94.0 0.055 1.9E-06 55.1 5.6 54 2-69 167-220 (329)
193 1s96_A Guanylate kinase, GMP k 94.0 0.025 8.6E-07 54.5 2.9 23 2-24 18-40 (219)
194 1g6h_A High-affinity branched- 94.0 0.026 8.9E-07 55.6 3.1 23 2-24 35-57 (257)
195 3lvq_E ARF-GAP with SH3 domain 94.0 0.064 2.2E-06 57.4 6.3 55 2-70 324-378 (497)
196 1t9h_A YLOQ, probable GTPase E 93.9 0.016 5.4E-07 59.0 1.5 23 2-24 175-197 (307)
197 3p26_A Elongation factor 1 alp 93.9 0.062 2.1E-06 57.7 6.2 22 2-23 35-56 (483)
198 2dby_A GTP-binding protein; GD 93.9 0.043 1.5E-06 57.2 4.8 22 2-23 3-24 (368)
199 2pze_A Cystic fibrosis transme 93.9 0.028 9.7E-07 54.4 3.1 22 2-23 36-57 (229)
200 3tr5_A RF-3, peptide chain rel 93.9 0.098 3.3E-06 57.0 7.7 22 2-23 15-36 (528)
201 4g1u_C Hemin import ATP-bindin 93.9 0.029 9.8E-07 55.7 3.2 23 2-24 39-61 (266)
202 2cbz_A Multidrug resistance-as 93.8 0.029 9.8E-07 54.6 3.1 22 2-23 33-54 (237)
203 1b0u_A Histidine permease; ABC 93.8 0.029 1E-06 55.5 3.1 23 2-24 34-56 (262)
204 3b85_A Phosphate starvation-in 93.8 0.026 9E-07 54.0 2.7 22 2-23 24-45 (208)
205 3lnc_A Guanylate kinase, GMP k 93.8 0.021 7.2E-07 54.6 1.9 22 2-23 29-51 (231)
206 1mv5_A LMRA, multidrug resista 93.8 0.031 1E-06 54.6 3.1 23 2-24 30-52 (243)
207 1sgw_A Putative ABC transporte 93.7 0.026 8.9E-07 54.3 2.5 23 2-24 37-59 (214)
208 3gfo_A Cobalt import ATP-bindi 93.7 0.03 1E-06 55.9 3.1 23 2-24 36-58 (275)
209 1z6g_A Guanylate kinase; struc 93.7 0.026 8.8E-07 54.0 2.5 22 2-23 25-46 (218)
210 1ji0_A ABC transporter; ATP bi 93.7 0.031 1E-06 54.5 3.1 23 2-24 34-56 (240)
211 1dar_A EF-G, elongation factor 93.7 0.15 5E-06 57.5 8.8 100 2-108 14-122 (691)
212 1vpl_A ABC transporter, ATP-bi 93.7 0.033 1.1E-06 55.1 3.1 23 2-24 43-65 (256)
213 4gp7_A Metallophosphoesterase; 93.6 0.034 1.2E-06 50.9 3.0 21 2-22 11-31 (171)
214 2d2e_A SUFC protein; ABC-ATPas 93.6 0.035 1.2E-06 54.4 3.3 22 2-23 31-52 (250)
215 2ff7_A Alpha-hemolysin translo 93.6 0.033 1.1E-06 54.6 3.1 23 2-24 37-59 (247)
216 1udx_A The GTP-binding protein 93.5 0.074 2.5E-06 56.3 5.8 56 2-70 159-217 (416)
217 2qi9_C Vitamin B12 import ATP- 93.5 0.035 1.2E-06 54.6 3.1 23 2-24 28-50 (249)
218 1zp6_A Hypothetical protein AT 93.5 0.038 1.3E-06 50.7 3.1 22 2-23 11-32 (191)
219 2olj_A Amino acid ABC transpor 93.5 0.036 1.2E-06 55.1 3.1 23 2-24 52-74 (263)
220 2kjq_A DNAA-related protein; s 93.5 0.064 2.2E-06 48.3 4.5 23 2-24 38-60 (149)
221 2zu0_C Probable ATP-dependent 93.5 0.039 1.3E-06 54.8 3.3 22 2-23 48-69 (267)
222 2eyu_A Twitching motility prot 93.4 0.037 1.3E-06 54.7 3.1 22 2-23 27-48 (261)
223 2nq2_C Hypothetical ABC transp 93.4 0.037 1.3E-06 54.5 3.1 23 2-24 33-55 (253)
224 2yv5_A YJEQ protein; hydrolase 93.4 0.12 3.9E-06 52.1 6.8 22 2-24 167-188 (302)
225 3aez_A Pantothenate kinase; tr 93.3 0.039 1.3E-06 56.1 3.2 22 2-23 92-113 (312)
226 2ixe_A Antigen peptide transpo 93.3 0.039 1.3E-06 54.9 3.1 23 2-24 47-69 (271)
227 2yz2_A Putative ABC transporte 93.3 0.039 1.3E-06 54.7 3.1 23 2-24 35-57 (266)
228 2ghi_A Transport protein; mult 93.3 0.04 1.4E-06 54.4 3.1 22 2-23 48-69 (260)
229 3izq_1 HBS1P, elongation facto 93.2 0.064 2.2E-06 59.5 5.0 22 2-23 169-190 (611)
230 2jeo_A Uridine-cytidine kinase 93.2 0.041 1.4E-06 53.2 3.1 22 2-23 27-48 (245)
231 2ihy_A ABC transporter, ATP-bi 93.2 0.041 1.4E-06 55.0 3.1 23 2-24 49-71 (279)
232 2j41_A Guanylate kinase; GMP, 93.2 0.048 1.6E-06 50.4 3.4 23 1-23 7-29 (207)
233 2qor_A Guanylate kinase; phosp 93.2 0.039 1.3E-06 51.7 2.7 23 1-23 13-35 (204)
234 1d2e_A Elongation factor TU (E 93.0 0.05 1.7E-06 56.8 3.5 67 2-70 5-78 (397)
235 3cb4_D GTP-binding protein LEP 93.0 0.13 4.5E-06 56.9 6.9 104 2-110 6-118 (599)
236 1np6_A Molybdopterin-guanine d 92.9 0.034 1.2E-06 51.8 1.8 31 2-32 8-38 (174)
237 1kag_A SKI, shikimate kinase I 92.8 0.051 1.7E-06 48.9 2.7 22 2-23 6-27 (173)
238 1htw_A HI0065; nucleotide-bind 92.7 0.058 2E-06 49.3 3.1 22 2-23 35-56 (158)
239 2ywe_A GTP-binding protein LEP 92.7 0.16 5.4E-06 56.3 7.0 104 2-110 8-120 (600)
240 1zun_B Sulfate adenylate trans 92.6 0.2 6.7E-06 52.9 7.4 22 2-23 26-47 (434)
241 2elf_A Protein translation elo 92.6 0.21 7.2E-06 51.8 7.4 20 2-21 23-42 (370)
242 2v9p_A Replication protein E1; 92.6 0.056 1.9E-06 54.9 3.0 22 2-23 128-149 (305)
243 2pjz_A Hypothetical protein ST 92.5 0.06 2.1E-06 53.4 3.1 22 2-23 32-53 (263)
244 4a74_A DNA repair and recombin 92.5 0.057 1.9E-06 50.7 2.8 22 2-23 27-48 (231)
245 1wb1_A Translation elongation 92.4 0.14 4.6E-06 55.2 6.0 22 2-23 21-42 (482)
246 2j37_W Signal recognition part 92.4 0.099 3.4E-06 56.8 4.9 21 2-22 103-123 (504)
247 3lw7_A Adenylate kinase relate 92.4 0.077 2.6E-06 47.0 3.3 20 1-20 2-21 (179)
248 2v3c_C SRP54, signal recogniti 92.3 0.022 7.7E-07 60.6 -0.4 22 2-23 101-122 (432)
249 1cke_A CK, MSSA, protein (cyti 92.3 0.074 2.5E-06 50.1 3.3 23 1-23 6-28 (227)
250 2rcn_A Probable GTPase ENGC; Y 92.2 0.072 2.4E-06 55.4 3.3 23 2-24 217-239 (358)
251 2bbs_A Cystic fibrosis transme 92.2 0.062 2.1E-06 54.1 2.8 22 2-23 66-87 (290)
252 4eun_A Thermoresistant glucoki 92.2 0.079 2.7E-06 49.4 3.3 22 2-23 31-52 (200)
253 3nh6_A ATP-binding cassette SU 92.2 0.045 1.5E-06 55.6 1.7 22 2-23 82-103 (306)
254 1sq5_A Pantothenate kinase; P- 92.1 0.066 2.2E-06 54.0 2.8 22 2-23 82-103 (308)
255 2ehv_A Hypothetical protein PH 92.1 0.076 2.6E-06 50.5 3.1 21 2-22 32-52 (251)
256 2f1r_A Molybdopterin-guanine d 92.1 0.023 7.7E-07 52.8 -0.6 22 2-23 4-25 (171)
257 3jvv_A Twitching mobility prot 92.0 0.073 2.5E-06 55.1 3.1 22 2-23 125-146 (356)
258 2bdt_A BH3686; alpha-beta prot 92.0 0.079 2.7E-06 48.6 3.1 22 2-23 4-25 (189)
259 1ex7_A Guanylate kinase; subst 92.0 0.065 2.2E-06 50.5 2.5 34 2-36 3-38 (186)
260 2bbw_A Adenylate kinase 4, AK4 92.0 0.089 3E-06 50.7 3.5 20 2-21 29-48 (246)
261 1xjc_A MOBB protein homolog; s 91.9 0.054 1.8E-06 50.4 1.8 33 1-33 5-37 (169)
262 1g7s_A Translation initiation 91.9 0.15 5.3E-06 56.3 5.7 101 1-110 6-117 (594)
263 4e22_A Cytidylate kinase; P-lo 91.9 0.095 3.2E-06 51.1 3.6 21 1-21 28-48 (252)
264 1z47_A CYSA, putative ABC-tran 91.8 0.085 2.9E-06 54.7 3.3 23 2-24 43-65 (355)
265 2i3b_A HCR-ntpase, human cance 91.8 0.074 2.5E-06 50.0 2.6 22 2-23 3-24 (189)
266 3tui_C Methionine import ATP-b 91.8 0.086 3E-06 54.9 3.3 23 2-24 56-78 (366)
267 3izy_P Translation initiation 91.7 0.038 1.3E-06 60.5 0.5 22 2-23 6-27 (537)
268 1kk1_A EIF2gamma; initiation o 91.6 1.1 3.7E-05 46.7 11.7 22 2-23 12-33 (410)
269 2if2_A Dephospho-COA kinase; a 91.6 0.09 3.1E-06 48.8 3.0 29 1-33 2-30 (204)
270 2yyz_A Sugar ABC transporter, 91.6 0.092 3.2E-06 54.5 3.3 23 2-24 31-53 (359)
271 3fvq_A Fe(3+) IONS import ATP- 91.5 0.085 2.9E-06 54.8 3.0 23 2-24 32-54 (359)
272 3rlf_A Maltose/maltodextrin im 91.5 0.095 3.2E-06 54.9 3.3 23 2-24 31-53 (381)
273 3dm5_A SRP54, signal recogniti 91.5 0.26 9E-06 52.6 6.8 30 2-31 102-131 (443)
274 1rj9_A FTSY, signal recognitio 91.5 0.067 2.3E-06 54.2 2.1 22 2-23 104-125 (304)
275 2it1_A 362AA long hypothetical 91.5 0.096 3.3E-06 54.5 3.3 23 2-24 31-53 (362)
276 1g29_1 MALK, maltose transport 91.5 0.095 3.2E-06 54.7 3.3 23 2-24 31-53 (372)
277 2rdo_7 EF-G, elongation factor 91.5 0.66 2.2E-05 52.3 10.4 22 2-23 12-33 (704)
278 1gtv_A TMK, thymidylate kinase 91.4 0.023 8E-07 53.0 -1.4 32 1-32 1-32 (214)
279 1v43_A Sugar-binding transport 91.4 0.1 3.5E-06 54.5 3.3 23 2-24 39-61 (372)
280 2pt7_A CAG-ALFA; ATPase, prote 91.3 0.074 2.5E-06 54.4 2.3 22 2-23 173-194 (330)
281 1p9r_A General secretion pathw 91.3 0.094 3.2E-06 55.6 3.1 22 2-23 169-190 (418)
282 3uie_A Adenylyl-sulfate kinase 91.3 0.1 3.5E-06 48.6 3.1 22 2-23 27-48 (200)
283 1zo1_I IF2, translation initia 91.3 0.074 2.5E-06 57.7 2.4 22 2-23 6-27 (501)
284 2gza_A Type IV secretion syste 91.3 0.078 2.7E-06 54.8 2.4 22 2-23 177-198 (361)
285 2dy1_A Elongation factor G; tr 91.3 0.26 8.8E-06 55.2 6.8 22 2-23 11-32 (665)
286 1knq_A Gluconate kinase; ALFA/ 91.2 0.11 3.8E-06 46.9 3.1 22 2-23 10-31 (175)
287 3tqc_A Pantothenate kinase; bi 91.2 0.1 3.5E-06 53.4 3.1 22 2-23 94-115 (321)
288 1jjv_A Dephospho-COA kinase; P 91.2 0.1 3.6E-06 48.5 3.0 21 2-22 4-24 (206)
289 1rz3_A Hypothetical protein rb 91.1 0.1 3.6E-06 48.7 2.8 22 2-23 24-45 (201)
290 3kb2_A SPBC2 prophage-derived 91.0 0.13 4.4E-06 45.9 3.3 23 1-23 2-24 (173)
291 3b9q_A Chloroplast SRP recepto 90.9 0.11 3.9E-06 52.4 3.2 22 2-23 102-123 (302)
292 1jny_A EF-1-alpha, elongation 90.9 0.077 2.6E-06 56.1 2.0 22 2-23 8-29 (435)
293 2ewv_A Twitching motility prot 90.9 0.11 3.6E-06 54.1 3.0 22 2-23 138-159 (372)
294 2z0h_A DTMP kinase, thymidylat 90.7 0.086 2.9E-06 48.3 1.9 23 1-23 1-23 (197)
295 1n0u_A EF-2, elongation factor 90.7 0.28 9.6E-06 56.4 6.5 100 2-107 21-142 (842)
296 3d31_A Sulfate/molybdate ABC t 90.6 0.087 3E-06 54.5 2.0 23 2-24 28-50 (348)
297 3ec2_A DNA replication protein 90.6 0.12 4E-06 47.1 2.7 22 2-23 40-61 (180)
298 2qt1_A Nicotinamide riboside k 90.5 0.13 4.5E-06 47.9 3.0 22 2-23 23-44 (207)
299 1f60_A Elongation factor EEF1A 90.5 0.075 2.5E-06 56.8 1.4 22 2-23 9-30 (458)
300 3szr_A Interferon-induced GTP- 90.4 0.097 3.3E-06 58.0 2.2 23 2-24 47-69 (608)
301 2vp4_A Deoxynucleoside kinase; 90.3 0.12 4.2E-06 49.4 2.7 22 2-23 22-43 (230)
302 2oap_1 GSPE-2, type II secreti 90.3 0.21 7.2E-06 54.2 4.8 22 2-23 262-283 (511)
303 1odf_A YGR205W, hypothetical 3 90.3 0.14 4.7E-06 51.4 3.1 22 2-23 33-54 (290)
304 3c5h_A Glucocorticoid receptor 90.3 0.14 4.8E-06 49.9 3.1 20 3-22 22-50 (255)
305 2jaq_A Deoxyguanosine kinase; 90.3 0.16 5.5E-06 46.6 3.3 23 1-23 1-23 (205)
306 3gd7_A Fusion complex of cysti 90.2 0.13 4.6E-06 53.9 3.0 22 2-23 49-70 (390)
307 3e70_C DPA, signal recognition 90.2 0.14 4.8E-06 52.4 3.1 22 2-23 131-152 (328)
308 3mca_A HBS1, elongation factor 90.1 0.089 3E-06 58.2 1.6 21 2-22 179-199 (592)
309 3ozx_A RNAse L inhibitor; ATP 90.1 0.14 4.7E-06 56.0 3.1 23 2-24 27-49 (538)
310 1oxx_K GLCV, glucose, ABC tran 90.1 0.082 2.8E-06 54.7 1.2 23 2-24 33-55 (353)
311 3t61_A Gluconokinase; PSI-biol 90.0 0.14 4.8E-06 47.5 2.6 22 2-23 20-41 (202)
312 1nks_A Adenylate kinase; therm 89.6 0.12 4E-06 47.0 1.7 23 1-23 2-24 (194)
313 1yqt_A RNAse L inhibitor; ATP- 89.6 0.17 5.9E-06 55.2 3.3 23 2-24 49-71 (538)
314 2og2_A Putative signal recogni 89.5 0.18 6E-06 52.4 3.2 22 2-23 159-180 (359)
315 2wsm_A Hydrogenase expression/ 89.5 0.17 5.9E-06 47.2 2.9 22 2-23 32-53 (221)
316 1lw7_A Transcriptional regulat 89.4 0.14 4.9E-06 52.6 2.4 22 2-23 172-193 (365)
317 3j16_B RLI1P; ribosome recycli 89.4 0.18 6.1E-06 56.0 3.3 23 2-24 105-127 (608)
318 2w0m_A SSO2452; RECA, SSPF, un 89.3 0.19 6.5E-06 46.8 3.1 22 2-23 25-46 (235)
319 1nij_A Hypothetical protein YJ 89.1 0.15 5.2E-06 51.6 2.3 23 2-24 6-28 (318)
320 1kht_A Adenylate kinase; phosp 89.0 0.24 8.4E-06 44.8 3.5 23 1-23 4-26 (192)
321 1s0u_A EIF-2-gamma, translatio 89.0 0.6 2E-05 48.7 6.9 22 2-23 10-31 (408)
322 1uf9_A TT1252 protein; P-loop, 88.7 0.19 6.4E-06 46.2 2.5 23 1-23 9-31 (203)
323 1vht_A Dephospho-COA kinase; s 88.7 0.21 7E-06 47.0 2.8 22 1-22 5-26 (218)
324 3bk7_A ABC transporter ATP-bin 88.6 0.2 7E-06 55.5 3.1 23 2-24 119-141 (607)
325 1ly1_A Polynucleotide kinase; 88.6 0.22 7.7E-06 44.6 2.9 21 2-22 4-24 (181)
326 2pbr_A DTMP kinase, thymidylat 88.5 0.27 9.3E-06 44.6 3.4 23 1-23 1-23 (195)
327 2yhs_A FTSY, cell division pro 88.4 0.22 7.5E-06 54.0 3.1 22 2-23 295-316 (503)
328 2npi_A Protein CLP1; CLP1-PCF1 88.4 0.17 6E-06 54.1 2.3 23 2-24 140-162 (460)
329 3b5x_A Lipid A export ATP-bind 88.4 0.23 7.7E-06 54.6 3.2 22 2-23 371-392 (582)
330 3euj_A Chromosome partition pr 88.3 0.23 7.7E-06 53.7 3.1 22 2-23 31-52 (483)
331 3ozx_A RNAse L inhibitor; ATP 88.1 0.24 8.1E-06 54.1 3.1 23 2-24 296-318 (538)
332 1yqt_A RNAse L inhibitor; ATP- 88.1 0.25 8.6E-06 53.9 3.3 23 2-24 314-336 (538)
333 3b60_A Lipid A export ATP-bind 88.0 0.22 7.4E-06 54.7 2.8 22 2-23 371-392 (582)
334 3bk7_A ABC transporter ATP-bin 88.0 0.25 8.7E-06 54.7 3.3 23 2-24 384-406 (607)
335 2pt5_A Shikimate kinase, SK; a 87.9 0.33 1.1E-05 43.2 3.5 23 1-23 1-23 (168)
336 2xxa_A Signal recognition part 87.7 0.17 5.8E-06 53.8 1.7 22 2-23 102-123 (433)
337 2yl4_A ATP-binding cassette SU 87.7 0.21 7.3E-06 54.9 2.5 22 2-23 372-393 (595)
338 3qf4_B Uncharacterized ABC tra 87.7 0.22 7.7E-06 54.8 2.7 22 2-23 383-404 (598)
339 4a82_A Cystic fibrosis transme 87.4 0.21 7.1E-06 54.8 2.2 22 2-23 369-390 (578)
340 1qhx_A CPT, protein (chloramph 87.3 0.36 1.2E-05 43.4 3.4 23 1-23 4-26 (178)
341 3j16_B RLI1P; ribosome recycli 87.3 0.3 1E-05 54.2 3.4 23 2-24 380-402 (608)
342 3kta_A Chromosome segregation 87.3 0.29 1E-05 44.3 2.8 22 2-23 28-49 (182)
343 4eaq_A DTMP kinase, thymidylat 87.2 0.29 9.8E-06 47.1 2.9 23 2-24 28-50 (229)
344 3fb4_A Adenylate kinase; psych 87.2 0.35 1.2E-05 45.1 3.4 23 1-23 1-23 (216)
345 3avx_A Elongation factor TS, e 87.2 0.23 8E-06 59.0 2.5 67 2-70 298-371 (1289)
346 3vaa_A Shikimate kinase, SK; s 87.2 0.35 1.2E-05 44.9 3.3 22 2-23 27-48 (199)
347 2ze6_A Isopentenyl transferase 87.1 0.31 1.1E-05 47.5 3.1 22 2-23 3-24 (253)
348 1cr0_A DNA primase/helicase; R 87.1 0.28 9.6E-06 48.4 2.8 22 2-23 37-58 (296)
349 2hf9_A Probable hydrogenase ni 87.0 0.3 1E-05 45.7 2.8 22 2-23 40-61 (226)
350 2cvh_A DNA repair and recombin 87.0 0.33 1.1E-05 45.0 3.1 21 2-22 22-42 (220)
351 3cm0_A Adenylate kinase; ATP-b 86.9 0.34 1.1E-05 44.0 3.0 22 2-23 6-27 (186)
352 3qf4_A ABC transporter, ATP-bi 86.8 0.25 8.5E-06 54.4 2.4 22 2-23 371-392 (587)
353 1n0w_A DNA repair protein RAD5 86.7 0.35 1.2E-05 45.6 3.1 22 2-23 26-47 (243)
354 2v54_A DTMP kinase, thymidylat 86.5 0.41 1.4E-05 43.9 3.4 23 1-23 5-27 (204)
355 2pez_A Bifunctional 3'-phospho 86.5 0.38 1.3E-05 43.6 3.1 22 2-23 7-28 (179)
356 3ake_A Cytidylate kinase; CMP 86.4 0.37 1.3E-05 44.3 3.1 22 2-23 4-25 (208)
357 2plr_A DTMP kinase, probable t 86.4 0.35 1.2E-05 44.5 2.9 22 2-23 6-27 (213)
358 1tev_A UMP-CMP kinase; ploop, 86.4 0.36 1.2E-05 43.7 2.9 22 2-23 5-26 (196)
359 2bwj_A Adenylate kinase 5; pho 86.3 0.39 1.3E-05 43.8 3.1 23 1-23 13-35 (199)
360 2c95_A Adenylate kinase 1; tra 85.9 0.42 1.4E-05 43.5 3.1 23 1-23 10-32 (196)
361 1e6c_A Shikimate kinase; phosp 85.9 0.39 1.3E-05 42.9 2.9 23 1-23 3-25 (173)
362 1r5b_A Eukaryotic peptide chai 85.9 0.41 1.4E-05 51.1 3.5 22 2-23 45-66 (467)
363 1via_A Shikimate kinase; struc 85.9 0.38 1.3E-05 43.5 2.7 22 2-23 6-27 (175)
364 3r20_A Cytidylate kinase; stru 85.8 0.45 1.5E-05 46.3 3.4 23 1-23 10-32 (233)
365 3dl0_A Adenylate kinase; phosp 85.8 0.46 1.6E-05 44.4 3.4 23 1-23 1-23 (216)
366 2wwf_A Thymidilate kinase, put 85.8 0.42 1.4E-05 44.2 3.1 23 1-23 11-33 (212)
367 2rhm_A Putative kinase; P-loop 85.8 0.36 1.2E-05 43.9 2.6 22 2-23 7-28 (193)
368 1z8u_A Alpha-hemoglobin stabil 85.5 7.7 0.00026 32.2 10.0 73 269-341 7-83 (102)
369 2obl_A ESCN; ATPase, hydrolase 85.4 0.38 1.3E-05 49.5 2.8 22 2-23 73-94 (347)
370 1nn5_A Similar to deoxythymidy 85.4 0.45 1.5E-05 44.0 3.1 23 1-23 10-32 (215)
371 1nlf_A Regulatory protein REPA 85.4 0.39 1.3E-05 47.1 2.8 22 2-23 32-53 (279)
372 2dpy_A FLII, flagellum-specifi 85.2 0.39 1.3E-05 51.1 2.8 22 2-23 159-180 (438)
373 1ixz_A ATP-dependent metallopr 85.1 0.43 1.5E-05 45.9 2.9 21 3-23 52-72 (254)
374 2cdn_A Adenylate kinase; phosp 85.0 0.54 1.8E-05 43.4 3.4 23 1-23 21-43 (201)
375 4edh_A DTMP kinase, thymidylat 85.0 0.33 1.1E-05 46.4 2.0 34 1-34 7-40 (213)
376 1uj2_A Uridine-cytidine kinase 84.9 0.44 1.5E-05 46.0 2.9 23 1-23 23-45 (252)
377 2yvu_A Probable adenylyl-sulfa 84.8 0.45 1.5E-05 43.4 2.7 22 2-23 15-36 (186)
378 2x8a_A Nuclear valosin-contain 84.5 0.47 1.6E-05 46.9 2.9 21 3-23 47-67 (274)
379 1qf9_A UMP/CMP kinase, protein 84.4 0.46 1.6E-05 42.9 2.6 22 2-23 8-29 (194)
380 2iyv_A Shikimate kinase, SK; t 84.3 0.46 1.6E-05 43.1 2.6 23 1-23 3-25 (184)
381 3trf_A Shikimate kinase, SK; a 84.2 0.62 2.1E-05 42.2 3.4 22 2-23 7-28 (185)
382 1zd8_A GTP:AMP phosphotransfer 84.1 0.56 1.9E-05 44.3 3.1 23 1-23 8-30 (227)
383 2vli_A Antibiotic resistance p 84.0 0.49 1.7E-05 42.6 2.6 23 1-23 6-28 (183)
384 1y63_A LMAJ004144AAA protein; 83.9 0.64 2.2E-05 42.5 3.4 23 1-23 11-33 (184)
385 2grj_A Dephospho-COA kinase; T 83.9 0.54 1.8E-05 44.1 2.9 23 1-23 13-35 (192)
386 1ukz_A Uridylate kinase; trans 83.8 0.54 1.9E-05 43.3 2.9 22 2-23 17-38 (203)
387 1svm_A Large T antigen; AAA+ f 83.3 0.58 2E-05 48.8 3.1 22 2-23 171-192 (377)
388 1q3t_A Cytidylate kinase; nucl 83.2 0.65 2.2E-05 44.3 3.2 23 1-23 17-39 (236)
389 1iy2_A ATP-dependent metallopr 83.2 0.57 2E-05 45.8 2.9 21 3-23 76-96 (278)
390 2xb4_A Adenylate kinase; ATP-b 83.1 0.72 2.5E-05 43.7 3.5 23 1-23 1-23 (223)
391 2px0_A Flagellar biosynthesis 83.1 0.56 1.9E-05 47.1 2.8 30 2-31 107-137 (296)
392 3iij_A Coilin-interacting nucl 82.9 0.62 2.1E-05 42.1 2.8 22 2-23 13-34 (180)
393 1a7j_A Phosphoribulokinase; tr 82.8 0.43 1.5E-05 47.7 1.8 23 1-23 6-28 (290)
394 1pzn_A RAD51, DNA repair and r 82.6 0.58 2E-05 48.0 2.8 22 2-23 133-154 (349)
395 1e4v_A Adenylate kinase; trans 82.6 0.69 2.4E-05 43.3 3.1 23 1-23 1-23 (214)
396 1aky_A Adenylate kinase; ATP:A 82.4 0.79 2.7E-05 43.0 3.4 23 1-23 5-27 (220)
397 2iw3_A Elongation factor 3A; a 82.4 0.39 1.3E-05 56.1 1.5 23 2-24 701-723 (986)
398 1vma_A Cell division protein F 82.2 0.69 2.4E-05 46.7 3.1 22 2-23 106-127 (306)
399 1f2t_A RAD50 ABC-ATPase; DNA d 82.1 0.83 2.8E-05 40.8 3.3 20 2-21 25-44 (149)
400 1m7g_A Adenylylsulfate kinase; 82.0 0.66 2.3E-05 43.4 2.7 22 2-23 27-48 (211)
401 3ux8_A Excinuclease ABC, A sub 81.9 0.54 1.9E-05 52.4 2.4 20 2-21 350-369 (670)
402 1zuh_A Shikimate kinase; alpha 81.7 0.88 3E-05 40.6 3.3 22 2-23 9-30 (168)
403 3hjn_A DTMP kinase, thymidylat 81.5 0.53 1.8E-05 44.2 1.8 34 1-34 1-34 (197)
404 2f6r_A COA synthase, bifunctio 81.5 0.68 2.3E-05 45.8 2.7 21 2-22 77-97 (281)
405 1qhl_A Protein (cell division 81.2 0.12 4.2E-06 50.1 -2.8 21 3-23 30-50 (227)
406 2iw3_A Elongation factor 3A; a 81.1 0.72 2.4E-05 53.9 3.1 22 2-23 463-484 (986)
407 1in4_A RUVB, holliday junction 80.9 0.75 2.6E-05 46.5 2.8 22 2-23 53-74 (334)
408 1jbk_A CLPB protein; beta barr 80.7 0.88 3E-05 40.3 2.9 22 2-23 45-66 (195)
409 3a4m_A L-seryl-tRNA(SEC) kinas 80.6 0.82 2.8E-05 44.5 2.9 22 2-23 6-27 (260)
410 1zak_A Adenylate kinase; ATP:A 80.3 0.77 2.6E-05 43.1 2.5 23 1-23 6-28 (222)
411 3nwj_A ATSK2; P loop, shikimat 80.3 0.76 2.6E-05 45.0 2.5 22 2-23 50-71 (250)
412 3be4_A Adenylate kinase; malar 79.7 1 3.5E-05 42.3 3.1 23 1-23 6-28 (217)
413 3qf7_A RAD50; ABC-ATPase, ATPa 79.6 1 3.4E-05 46.5 3.3 21 2-22 25-45 (365)
414 2w58_A DNAI, primosome compone 79.5 0.79 2.7E-05 42.2 2.3 22 2-23 56-77 (202)
415 2dr3_A UPF0273 protein PH0284; 79.5 0.99 3.4E-05 42.4 3.0 21 2-22 25-45 (247)
416 3g5u_A MCG1178, multidrug resi 79.4 0.79 2.7E-05 55.1 2.7 22 2-23 418-439 (1284)
417 4f4c_A Multidrug resistance pr 79.3 0.81 2.8E-05 55.2 2.8 22 2-23 446-467 (1321)
418 3d3q_A TRNA delta(2)-isopenten 79.1 1.1 3.6E-05 46.3 3.2 22 2-23 9-30 (340)
419 2h92_A Cytidylate kinase; ross 78.8 0.97 3.3E-05 42.1 2.7 23 1-23 4-26 (219)
420 4f4c_A Multidrug resistance pr 78.6 0.65 2.2E-05 56.0 1.7 22 2-23 1107-1128(1321)
421 2p5t_B PEZT; postsegregational 78.6 0.7 2.4E-05 44.7 1.7 22 2-23 34-55 (253)
422 4tmk_A Protein (thymidylate ki 78.6 0.7 2.4E-05 44.1 1.6 29 1-29 4-32 (213)
423 3tlx_A Adenylate kinase 2; str 78.3 1.1 3.7E-05 43.2 2.9 23 1-23 30-52 (243)
424 4ag6_A VIRB4 ATPase, type IV s 78.2 1 3.5E-05 46.4 2.9 21 3-23 38-58 (392)
425 3lv8_A DTMP kinase, thymidylat 78.1 0.72 2.5E-05 44.9 1.6 30 1-30 28-57 (236)
426 3kl4_A SRP54, signal recogniti 77.9 0.66 2.3E-05 49.3 1.3 30 2-31 99-128 (433)
427 1tf7_A KAIC; homohexamer, hexa 77.9 1 3.4E-05 48.7 2.8 22 2-23 41-64 (525)
428 1gvn_B Zeta; postsegregational 77.6 1.1 3.7E-05 44.6 2.7 22 2-23 35-56 (287)
429 1w1w_A Structural maintenance 77.4 1.2 4E-05 46.7 3.1 22 2-23 28-49 (430)
430 1wb9_A DNA mismatch repair pro 77.4 1.1 3.9E-05 51.2 3.1 22 2-23 609-630 (800)
431 1ak2_A Adenylate kinase isoenz 77.3 1.4 4.9E-05 41.7 3.4 23 1-23 17-39 (233)
432 1ewq_A DNA mismatch repair pro 77.2 1.1 3.9E-05 50.9 3.1 22 2-23 578-599 (765)
433 3r7w_B Gtpase2, GTP-binding pr 77.2 2.2 7.5E-05 43.7 4.9 57 3-71 2-59 (331)
434 1lv7_A FTSH; alpha/beta domain 77.1 1.2 4.2E-05 42.6 2.9 21 3-23 48-68 (257)
435 3exa_A TRNA delta(2)-isopenten 77.1 1.4 4.7E-05 45.1 3.3 22 2-23 5-26 (322)
436 3v9p_A DTMP kinase, thymidylat 77.0 0.57 1.9E-05 45.3 0.5 23 1-23 26-48 (227)
437 1tf7_A KAIC; homohexamer, hexa 76.9 1.1 3.9E-05 48.3 2.8 22 2-23 283-304 (525)
438 3qks_A DNA double-strand break 76.8 1.4 4.8E-05 41.3 3.1 20 2-21 25-44 (203)
439 3g5u_A MCG1178, multidrug resi 76.6 1.2 4E-05 53.7 3.1 22 2-23 1061-1082(1284)
440 1ltq_A Polynucleotide kinase; 76.3 1.3 4.5E-05 43.4 2.9 21 2-22 4-24 (301)
441 1njg_A DNA polymerase III subu 75.9 1.5 5.3E-05 40.1 3.1 22 2-23 47-68 (250)
442 3bos_A Putative DNA replicatio 75.9 1.5 5.1E-05 40.7 3.1 22 2-23 54-75 (242)
443 1p5z_B DCK, deoxycytidine kina 75.8 1 3.6E-05 43.6 2.0 23 1-23 25-47 (263)
444 3foz_A TRNA delta(2)-isopenten 75.8 1.6 5.3E-05 44.6 3.3 22 2-23 12-33 (316)
445 3cr8_A Sulfate adenylyltranfer 75.6 0.85 2.9E-05 50.0 1.4 22 2-23 371-392 (552)
446 3sr0_A Adenylate kinase; phosp 75.6 1.7 5.8E-05 41.2 3.4 23 1-23 1-23 (206)
447 1yrb_A ATP(GTP)binding protein 75.2 1.3 4.4E-05 42.3 2.5 21 2-22 16-36 (262)
448 3lda_A DNA repair protein RAD5 75.2 1.4 4.8E-05 46.2 2.9 20 2-21 180-199 (400)
449 1zu4_A FTSY; GTPase, signal re 75.1 1.5 5.2E-05 44.4 3.1 22 2-23 107-128 (320)
450 3ld9_A DTMP kinase, thymidylat 75.0 0.63 2.2E-05 44.9 0.2 23 1-23 22-44 (223)
451 2ocp_A DGK, deoxyguanosine kin 74.9 1.4 4.8E-05 42.0 2.6 23 1-23 3-25 (241)
452 4aby_A DNA repair protein RECN 74.8 0.52 1.8E-05 48.7 -0.5 22 2-23 62-83 (415)
453 1fnn_A CDC6P, cell division co 74.3 1.7 5.9E-05 43.7 3.3 22 2-23 46-67 (389)
454 2p65_A Hypothetical protein PF 73.7 1.4 4.9E-05 39.0 2.2 22 2-23 45-66 (187)
455 3qkt_A DNA double-strand break 73.6 1.8 6.3E-05 43.8 3.3 20 2-21 25-44 (339)
456 2qby_A CDC6 homolog 1, cell di 73.6 1.5 5.1E-05 43.8 2.6 22 2-23 47-68 (386)
457 3a8t_A Adenylate isopentenyltr 73.5 1.8 6.3E-05 44.4 3.2 22 2-23 42-63 (339)
458 1e69_A Chromosome segregation 73.0 1.7 5.8E-05 43.7 2.8 22 2-23 26-47 (322)
459 1j8m_F SRP54, signal recogniti 72.6 1.7 5.7E-05 43.6 2.6 22 2-23 100-121 (297)
460 3eph_A TRNA isopentenyltransfe 72.5 1.8 6.2E-05 45.6 2.9 22 2-23 4-25 (409)
461 3crm_A TRNA delta(2)-isopenten 72.5 2.1 7.2E-05 43.7 3.3 22 2-23 7-28 (323)
462 3ux8_A Excinuclease ABC, A sub 72.3 1.6 5.5E-05 48.6 2.6 16 2-17 46-61 (670)
463 1ls1_A Signal recognition part 72.3 2 7E-05 42.8 3.2 22 2-23 100-121 (295)
464 2o5v_A DNA replication and rep 72.2 2 6.7E-05 44.4 3.1 22 2-23 28-49 (359)
465 2chg_A Replication factor C sm 71.8 2.2 7.4E-05 38.7 3.0 21 3-23 41-61 (226)
466 4hlc_A DTMP kinase, thymidylat 71.7 2.1 7.3E-05 40.4 3.0 31 2-33 4-34 (205)
467 2qen_A Walker-type ATPase; unk 71.4 2.3 7.8E-05 41.9 3.3 22 2-23 33-54 (350)
468 1w5s_A Origin recognition comp 71.3 1.3 4.5E-05 45.0 1.5 21 3-23 55-75 (412)
469 2fna_A Conserved hypothetical 71.2 2.1 7.1E-05 42.3 2.9 22 2-23 32-53 (357)
470 1dek_A Deoxynucleoside monopho 71.0 2.6 8.8E-05 41.1 3.5 28 1-31 2-29 (241)
471 3fdi_A Uncharacterized protein 70.4 2.5 8.5E-05 39.6 3.1 23 1-23 7-29 (201)
472 2qmh_A HPR kinase/phosphorylas 70.4 2.3 8E-05 40.6 2.9 22 2-23 36-57 (205)
473 2qgz_A Helicase loader, putati 70.3 1.3 4.4E-05 44.5 1.2 22 2-23 154-175 (308)
474 2ius_A DNA translocase FTSK; n 69.8 2.3 7.8E-05 46.2 3.0 20 3-22 170-189 (512)
475 3hr8_A Protein RECA; alpha and 69.6 2.2 7.5E-05 44.1 2.8 22 2-23 63-84 (356)
476 3zvl_A Bifunctional polynucleo 69.6 2.6 8.7E-05 44.2 3.3 23 1-23 259-281 (416)
477 2ffh_A Protein (FFH); SRP54, s 69.5 1.8 6.3E-05 45.8 2.2 30 2-31 100-129 (425)
478 1sxj_E Activator 1 40 kDa subu 67.9 2.3 8E-05 42.5 2.5 20 3-22 39-58 (354)
479 1e2k_A Thymidine kinase; trans 67.8 3.1 0.00011 42.6 3.4 23 1-23 5-27 (331)
480 3vqt_A RF-3, peptide chain rel 67.3 5.2 0.00018 43.5 5.3 97 3-106 34-143 (548)
481 2o8b_B DNA mismatch repair pro 67.2 2.6 8.8E-05 49.5 3.0 21 2-23 791-811 (1022)
482 4i1u_A Dephospho-COA kinase; s 67.0 3.6 0.00012 39.3 3.5 26 2-31 11-36 (210)
483 1l8q_A Chromosomal replication 67.0 2.7 9.3E-05 41.7 2.8 21 3-23 40-60 (324)
484 3b9p_A CG5977-PA, isoform A; A 66.8 2.9 9.8E-05 40.8 2.8 22 2-23 56-77 (297)
485 4fcw_A Chaperone protein CLPB; 66.1 3.2 0.00011 40.5 3.1 22 2-23 49-70 (311)
486 3thx_B DNA mismatch repair pro 66.0 2.1 7E-05 49.8 1.8 21 2-22 675-695 (918)
487 2v1u_A Cell division control p 64.9 2.9 9.8E-05 41.8 2.5 22 2-23 46-67 (387)
488 2orw_A Thymidine kinase; TMTK, 64.9 3.7 0.00013 37.8 3.1 21 2-22 5-25 (184)
489 2ygr_A Uvrabc system protein A 64.7 2.6 9E-05 49.2 2.4 20 2-21 670-689 (993)
490 3umf_A Adenylate kinase; rossm 64.3 3.7 0.00013 39.3 3.0 22 2-23 31-52 (217)
491 3thx_A DNA mismatch repair pro 64.1 3.4 0.00012 48.1 3.1 20 2-21 664-683 (934)
492 1of1_A Thymidine kinase; trans 63.9 4.3 0.00015 42.3 3.6 22 2-23 51-72 (376)
493 3cf0_A Transitional endoplasmi 63.9 3.4 0.00012 40.9 2.8 22 2-23 51-72 (301)
494 3n70_A Transport activator; si 63.2 5.2 0.00018 34.9 3.6 21 3-23 27-47 (145)
495 3h4m_A Proteasome-activating n 63.1 3.7 0.00012 39.7 2.8 21 3-23 54-74 (285)
496 2vf7_A UVRA2, excinuclease ABC 63.1 1.9 6.6E-05 49.5 0.9 21 2-22 525-546 (842)
497 2qz4_A Paraplegin; AAA+, SPG7, 63.1 3.8 0.00013 38.8 2.9 21 3-23 42-62 (262)
498 1c9k_A COBU, adenosylcobinamid 62.3 3.6 0.00012 38.4 2.4 20 3-22 2-21 (180)
499 3tmk_A Thymidylate kinase; pho 62.2 4.4 0.00015 38.7 3.1 23 1-23 6-28 (216)
500 1e9r_A Conjugal transfer prote 62.2 3.7 0.00012 42.7 2.7 20 3-22 56-75 (437)
No 1
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=2.3e-73 Score=609.20 Aligned_cols=336 Identities=24% Similarity=0.383 Sum_probs=296.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCC--------------CCCCeeeeecCcCccceEEeeecccccc-cCCCceeEEEeec
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLS--------------CDEGFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYLDT 65 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~--------------~~~gF~vg~~~~~~TkGIWmW~~p~~~~-~~g~~~~vlllDT 65 (542)
+||||+|++|||||||||+|++.. ..+||+||+++++||+|||||+.|+..+ .+|++++|+||||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 489999999999999999887421 1479999999999999999999999765 3788999999999
Q ss_pred CCcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeecccc-
Q 009154 66 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ- 144 (542)
Q Consensus 66 EG~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~~- 144 (542)
||++|.+++..+|++||||++||||++|||++|+|++++|++|++|+++++.+.. .....++| .|+|+| |||+.
T Consensus 148 EG~~d~~~~~~~d~~ifaLa~LLSS~~IyN~~~~i~~~~L~~L~~~tel~~~i~~---~~~~~~Fp-~f~wlv-RDf~l~ 222 (457)
T 4ido_A 148 QGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAME---ETFLKPFQ-SLIFLV-RDWSFP 222 (457)
T ss_dssp CCBTCTTCCHHHHHHHHHHHHHHCSEEEEEEESSCCHHHHHHHHHHHHHHHHHSC---CCSSCSEE-EEEEEE-ETCCCT
T ss_pred cCCCCcccCccccHHHHHHHHHHhhheeecccccCCHHHHHHHHHHHHHHHHHhh---hcccccCC-ceEEEE-ecCCcc
Confidence 9999999988899999999999999999999999999999999999999998742 22456778 599997 99973
Q ss_pred ----c--cchHHHHHHHhhcCCCCCCCcchhhhhhHHHHHhccCCCcceeccCCccccccccC--CCCCCCCChHHHHHH
Q 009154 145 ----G--KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC--DMKDEELDPIYVKRR 216 (542)
Q Consensus 145 ----g--~t~~eyLe~~L~~~~~~~~~~~~~e~N~iR~~I~~~F~~~~cF~Lp~P~~~~~~L~--~l~~~~L~p~F~e~~ 216 (542)
| .|+++|||++|+..+|. .++.|++|++|++||++++||+||||+.+++.+. +.+.++|+|+|++++
T Consensus 223 l~~~~g~~t~~eyLe~~L~~~~g~-----~~~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~peF~~ql 297 (457)
T 4ido_A 223 YEFSYGADGGAKFLEKRLKVSGNQ-----HEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNL 297 (457)
T ss_dssp TTSCSBHHHHHHHHHHHHCCCTTS-----CHHHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHhccCCCC-----CHHHHHHHHHHHHhCCCCcEEEcCCCchhhhhchhhhcChhhCCHHHHHHH
Confidence 2 38899999999987653 3578899999999999999999999998764332 345688999999999
Q ss_pred HHHHHHhhh--ccCCcccCCeecchhHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHHHHHHHHHHHHhhcc--
Q 009154 217 EQLKKLVAS--VTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLV----EVFNKGILERCLKLYNERMAKVR-- 288 (542)
Q Consensus 217 ~~L~~~i~~--~~~pK~l~G~~ltG~~L~~lv~~yveaIn~g~vP~~~sl~----e~~n~~ave~A~~~Y~~~M~~~~-- 288 (542)
++|+++|++ .++||+++|.++||++|++|+++||+|||+|++|+++++| +++|.+|+++|+++|++.|++..
T Consensus 298 ~~l~~~I~~~~~l~~K~i~G~~vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~ 377 (457)
T 4ido_A 298 KILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGG 377 (457)
T ss_dssp HHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhccccccccccCCEeecHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999997 4569999999999999999999999999999999999866 57899999999999999999753
Q ss_pred -CC-CCHhHHHHHHHHHHHHHHHHHHHhc-cCch-hHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009154 289 -LP-LPEQSLQDAHERSKKEAMDVFDVQH-FGRQ-HAKKSVMQLDEEIQEAYKNVIMANEYQ 346 (542)
Q Consensus 289 -lP-~~~eeL~~~H~~~~~eAl~~F~~~s-fgd~-~~~~~~~~L~~~i~~~~~~~~~~Ne~~ 346 (542)
+| +++++|++.|++|+++|+++|++.+ +|.. ..++|+++|+++|++++++|+++|+.+
T Consensus 378 ~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~~~~~~~Ne~k 439 (457)
T 4ido_A 378 DKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK 439 (457)
T ss_dssp TSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68 5799999999999999999999874 4443 468899999999999999999999975
No 2
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=100.00 E-value=2.1e-66 Score=557.43 Aligned_cols=337 Identities=25% Similarity=0.396 Sum_probs=293.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCC--------------CCCCeeeeecCcCccceEEeeecccccc-cCCCceeEEEeec
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLS--------------CDEGFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYLDT 65 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~--------------~~~gF~vg~~~~~~TkGIWmW~~p~~~~-~~g~~~~vlllDT 65 (542)
.||||+|++|||||||||+|+|.. ...||++++|+++||+|||||+.|+..+ .+|+++.|+||||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 389999999999999999999851 2479999999999999999999998765 3677899999999
Q ss_pred CCcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccccCCCCCCCCcceEEEEeecccc-
Q 009154 66 EGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQDVAFEPAKLVWLIQRDFLQ- 144 (542)
Q Consensus 66 EG~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~~~~~~~~P~~flw~vvRDf~~- 144 (542)
||+++.+++..+|++||||++||||++|||++|+|+++++++|++|+++++.+..+ ....++| .|+|+| |||+.
T Consensus 148 eG~~~~~~~~~~d~~ifal~~lLSs~~IyN~~~~i~~~~l~~L~~~~e~~~~~~~~---~~~~~fp-~l~wvv-RD~~~~ 222 (447)
T 3q5d_A 148 QGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEE---TFLKPFQ-SLIFLV-RDWSFP 222 (447)
T ss_dssp ECCCSSHHHHHHHHHHHHHHHHHCSEEEEEESSSCCHHHHHHHHHHHHHHHHTSCC---CSSCSEE-EEEEEE-EEECCT
T ss_pred CcccccccchhhhHHHHHHHHHHhhHHHHhhcccccHHHHHHHHHHHHHHHHHHHh---hcccCCC-ceEEEE-eecccc
Confidence 99999888778999999999999999999999999999999999999999975322 2345677 599997 99973
Q ss_pred -----c-cchHHHHHHHhhcCCCCCCCcchhhhhhHHHHHhccCCCcceeccCCccccccccC--CCCCCCCChHHHHHH
Q 009154 145 -----G-KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLRTKLC--DMKDEELDPIYVKRR 216 (542)
Q Consensus 145 -----g-~t~~eyLe~~L~~~~~~~~~~~~~e~N~iR~~I~~~F~~~~cF~Lp~P~~~~~~L~--~l~~~~L~p~F~e~~ 216 (542)
| .|+++||+++|+..++ ..++.|.+|++|++||++++||+||||+.+..... +.+.++|+|+|++++
T Consensus 223 l~~~~g~~t~~eyLe~~L~~~~~-----~~~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L~~~F~~~l 297 (447)
T 3q5d_A 223 YEFSYGADGGAKFLEKRLKVSGN-----QHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNL 297 (447)
T ss_dssp TTSCSBHHHHHHHHHHHHHSSTT-----CSSSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhhccC-----ccHHHHHHHHHHHHhCCCceEEeccCcccchhhhhhhhcchhhccHHHHHHH
Confidence 3 5899999999997653 23567889999999999999999999997653322 345688999999999
Q ss_pred HHHHHHhhh--ccCCcccCCeecchhHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHHHHHHHHHHHHhhc---
Q 009154 217 EQLKKLVAS--VTRPKIVQGKFLNGNEFVAFMEQILEALNKGEIPSTGSLV----EVFNKGILERCLKLYNERMAKV--- 287 (542)
Q Consensus 217 ~~L~~~i~~--~~~pK~l~G~~ltG~~L~~lv~~yveaIn~g~vP~~~sl~----e~~n~~ave~A~~~Y~~~M~~~--- 287 (542)
++|+++|++ .++||.++|.++||++|+.|++.||++||+|++|+++|++ +++|.+|+++|++.|++.|++.
T Consensus 298 ~~l~~~i~~~~~~~~K~~~G~~vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~ 377 (447)
T 3q5d_A 298 KILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGG 377 (447)
T ss_dssp HHHHHHHHSTTTCCCCEETTEECBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhcCcccccccccCCEeecHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999985 5778999999999999999999999999999999998765 5779999999999999999974
Q ss_pred cCC-CCHhHHHHHHHHHHHHHHHHHHHhc-cCch-hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009154 288 RLP-LPEQSLQDAHERSKKEAMDVFDVQH-FGRQ-HAKKSVMQLDEEIQEAYKNVIMANEYQS 347 (542)
Q Consensus 288 ~lP-~~~eeL~~~H~~~~~eAl~~F~~~s-fgd~-~~~~~~~~L~~~i~~~~~~~~~~Ne~~S 347 (542)
..| +++++|.+.|+.++++|++.|++.+ +|.. ..++|+++|+++|++++++|+++|+.+.
T Consensus 378 ~~p~~~~~~L~~~h~~~~~~al~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~Ne~k~ 440 (447)
T 3q5d_A 378 DKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKN 440 (447)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 367 4789999999999999999999985 7654 3678999999999999999999999764
No 3
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=100.00 E-value=3.4e-65 Score=564.29 Aligned_cols=391 Identities=26% Similarity=0.450 Sum_probs=336.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccC-cchhhh
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK-SNVYDD 79 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~-~~~~D~ 79 (542)
.+|+|+|++++|||||+|.|+|. ..+|.+++++.+||+|+|+|+.|++.. .+..++|+||||+++..+ +..+|.
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~--~~~~~~~~tt~~~T~gi~~~~~~~~~~---~~~~i~LiDTpGi~~~~~~~~~~~~ 113 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGK--KKGFSLGSTVQSHTKGIWMWCVPHPKK---PGHILVLLDTEGLGDVEKGDNQNDS 113 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC--SSCSCCCCSSSCCCCSEEEEEEECSSS---TTCEEEEEEECCBCCGGGCCCTTHH
T ss_pred cEEEEECCCCCCHHHHHHhHcCC--CCccccCCCCCCceeEEEEeecccccC---CCceEEEecCCCcCcccccchhHHH
Confidence 37999999999999999999996 468999999999999999999988643 567899999999999877 456789
Q ss_pred HHHHHHHhhhccEEEcCCCCcchHhhhhHHHHHHHHHHHhccccCC-----------CCCCCCcceEEEEeecccc----
Q 009154 80 RIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRVKGQ-----------DVAFEPAKLVWLIQRDFLQ---- 144 (542)
Q Consensus 80 ~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~v~el~~~i~~r~~~~-----------~~~~~P~~flw~vvRDf~~---- 144 (542)
.+|+|++++||++|||+.|.|++++++.|+++.++++.+..+++.. ...++| .|+|+| |||+.
T Consensus 114 ~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP-~~~wvv-RD~~l~~~~ 191 (592)
T 1f5n_A 114 WIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFP-DFVWTL-RDFSLDLEA 191 (592)
T ss_dssp HHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCC-EEEEEE-ETCCCCCCC
T ss_pred HHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHhhhhhcccCcccccccccchhhhhccCC-ceEEEE-ecccchhcc
Confidence 9999999999999999999999999999999999999888765321 134688 499997 99972
Q ss_pred -c--cchHHHHHHHhhcCCCCCCCcchhhhhhHHHHHhccCCCcceeccCCccccc--cccCCCCCCCCChHHHHHHHHH
Q 009154 145 -G--KSVQEMVHDALQRVPNDKGDKNIDMVNQIRNSLAIMGDNSTAFSLPQPHLLR--TKLCDMKDEELDPIYVKRREQL 219 (542)
Q Consensus 145 -g--~t~~eyLe~~L~~~~~~~~~~~~~e~N~iR~~I~~~F~~~~cF~Lp~P~~~~--~~L~~l~~~~L~p~F~e~~~~L 219 (542)
| .|+++||+++|+..+|. ++.+++.|.+|++|++||++++||+||||+.+. .+|++++.++|+|+|+++++.|
T Consensus 192 ~g~~~t~~eyLe~~L~~~~~~--~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~~l~~L~~~~~~~L~peF~~~l~~l 269 (592)
T 1f5n_A 192 DGQPLTPDEYLTYSLKLKKGT--SQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQVADF 269 (592)
T ss_dssp SSSCCCHHHHHHHHTCCCCCC--SHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGGGGGGGGGSCGGGSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhccCC--ChhhHhhhhHHHHHHHhCCCCcEEEeCCCCcHHHHhhhccCChhhCCHHHHHHHHHH
Confidence 3 38999999999988653 577888999999999999999999999999876 4566788899999999999999
Q ss_pred HHHhhhccCCcccC-CeecchhHHHHHHHHHHHHHhcCCCCChhhHH----HHHHHHHHHHHHHHHHHHHhh-ccCCCCH
Q 009154 220 KKLVASVTRPKIVQ-GKFLNGNEFVAFMEQILEALNKGEIPSTGSLV----EVFNKGILERCLKLYNERMAK-VRLPLPE 293 (542)
Q Consensus 220 ~~~i~~~~~pK~l~-G~~ltG~~L~~lv~~yveaIn~g~vP~~~sl~----e~~n~~ave~A~~~Y~~~M~~-~~lP~~~ 293 (542)
|++|++.++||+++ |.++||++|+.|++.||+|||+|.+|+++|+| +++|.+|+++|+++|.+.|++ +.+|++.
T Consensus 270 ~~~i~~~~~~K~~~gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~ 349 (592)
T 1f5n_A 270 CSYIFSNSKTKTLSGGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTES 349 (592)
T ss_dssp HHHHHHHCCCCEETTTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSS
T ss_pred HHHHHccccceeecCCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999999999987 57999999999999999999999999999855 667999999999999999985 6789885
Q ss_pred -hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-hHh--hc
Q 009154 294 -QSLQDAHERSKKEAMDVFDVQHFGRQHAKKSVMQLDEEIQEAYKNVIMANEYQSSKICESLYTRCEDKMDQ-LQV--LR 369 (542)
Q Consensus 294 -eeL~~~H~~~~~eAl~~F~~~sfgd~~~~~~~~~L~~~i~~~~~~~~~~Ne~~S~~~C~~l~~~~e~kL~~-l~~--~~ 369 (542)
++|.+.|+.|.++|+++|++++|||. .++|+++|++.|++++++|+++|+++|..+|+++++.+.++|.+ +.. .+
T Consensus 350 ~~eL~~~H~~~~~~Al~~F~~~~~~d~-~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~ 428 (592)
T 1f5n_A 350 LQELLDLHRDSEREAIEVFIRSSFKDV-DHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYS 428 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 99999999999999999999999986 47899999999999999999999999999999998777766654 321 11
Q ss_pred chh-HHHHhhhhhcccccccccc-cCCcchhHHH
Q 009154 370 LPS-MAKFNAGFLQCNQSFAHEC-VGPSKANYEQ 401 (542)
Q Consensus 370 ~~~-~~~~~~g~~~~~~~f~~~~-~GP~~~~~~~ 401 (542)
.|- ...|.+....+...|.+.. .||.+++..+
T Consensus 429 ~p~g~~~~~~~~~~~~~~Y~~~~~kg~~~~~vl~ 462 (592)
T 1f5n_A 429 KPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQ 462 (592)
T ss_dssp STTHHHHHHHHHHHHHHHHHHSSCCCTTHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 111 2334555555666787777 6998874333
No 4
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.92 E-value=3.6e-05 Score=75.57 Aligned_cols=59 Identities=24% Similarity=0.238 Sum_probs=40.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcccccC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK 73 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~ 73 (542)
-|+++|..++|||+|+|.|+|.. .|..+. ++..|..+...| .+..+.++||+|+.+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~---~~~~~~~~~~~T~~~~~~~~~~----------~~~~i~liDTPG~~~~~~ 85 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR---RFFSRLGATSVTRACTTGSRRW----------DKCHVEVVDTPDIFSSQV 85 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC---CC---------CCSCEEEEEEE----------TTEEEEEEECCSCSSTTH
T ss_pred EEEEECCCCCcHHHHHHHHhCCC---CccccCCCCCccccEEEEEEEE----------CCcEEEEEECCCCCCCCC
Confidence 38999999999999999999863 344332 333444555443 356789999999976543
No 5
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.79 E-value=0.00014 Score=71.16 Aligned_cols=59 Identities=24% Similarity=0.275 Sum_probs=41.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecC----cCccceEEeeecccccccCCCceeEEEeecCCcccccC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMR----DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGK 73 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~----~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~ 73 (542)
-|+|+|..++|||+|+|+|++. .+|..+... ..+..++..| .+..+.++||+|+.+...
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~---~~~~~~~~~~~~t~~~~~~~~~~----------~~~~i~iiDTpG~~~~~~ 86 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK---QAFESKLGSQTLTKTCSKSQGSW----------GNREIVIIDTPDMFSWKD 86 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS---CCSCCCTTSCCCCCSCEEEEEEE----------TTEEEEEEECCGGGGSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC---CCcccCCCCCceeeeeEEEEEEe----------CCCEEEEEECcCCCCCCC
Confidence 4899999999999999999986 356544322 2233334433 246799999999887543
No 6
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.75 E-value=0.0001 Score=71.24 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|+++|+.++|||+|+|.|+|.. .+..+. +...+..+..-| .+..+.++||+|+.+...+
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~---~~~~~~~~~~~t~~~~~~~~~~----------~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK---VFHSGTAAKSITKKCEKRSSSW----------KETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC---CSCC-------CCSCEEEEEEE----------TTEEEEEEECCSCC-----
T ss_pred EEEEECCCCCCHHHHHHHHcCCC---cCccCCCCCceeeeEEEEEEEe----------CCceEEEEECCCccCCCCC
Confidence 48999999999999999999964 132221 111222222222 3467899999999875443
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.69 E-value=0.00019 Score=72.89 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=40.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee-ee---cCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV-GH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v-g~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|+|+|..++|||+|+|+|+|.. |.. ++ ++.....|+..+ +.+..+.++||+|..+..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~----~~i~s~~~~tT~~~~~~~~~~---------~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK----VSIISPKAGTTRMRVLGVKNI---------PNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC----CSCCCSSSCCCCSCEEEEEEE---------TTTEEEEEEECCCCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC----ccccCCCCCceeeEEEEEEec---------CCCCeEEEEECcCCCccc
Confidence 58999999999999999999964 432 22 112223344432 126789999999997644
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.59 E-value=0.00029 Score=64.39 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=38.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|.|+|+.++|||+|+|+|++.. +...+....+|..+-.... +..+.++||+|++..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~t~~~~~~~~---------~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK----IAFVSKTPGKTRSINFYLV---------NSKYYFVDLPGYGYA 81 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC----CSCCCSSCCCCCCEEEEEE---------TTTEEEEECCCBSSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCc----cccccCCCCCccCeEEEEE---------CCcEEEEECCCCccc
Confidence 48899999999999999999863 3322222334554443221 234779999998764
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.54 E-value=0.0002 Score=67.54 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=41.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|.|+|..++|||+|+|+|++.. .+...+....+|..+-..... ...+..+.++||+|+++..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~~~~~~-----~~~~~~~~l~DtpG~~~~~ 93 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHINYFSVG-----PAAEPVAHLVDLPGYGYAE 93 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEEEEEES-----CTTSCSEEEEECCCCCSSC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceEEEEec-----CCCCCcEEEEcCCCCCccc
Confidence 58999999999999999999853 111222223445554332221 1245679999999987643
No 10
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.52 E-value=0.00051 Score=69.64 Aligned_cols=56 Identities=27% Similarity=0.500 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eee---cCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+|+|..++|||+|+|+|+|.. |. +.+ ++.....|+..| .+..+.++||+|+.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~----~~ivs~~~~tTr~~i~~i~~~----------~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK----VAPISPRPQTTRKRLRGILTE----------GRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC----CSCCCSSSCCCCSCEEEEEEE----------TTEEEEEEECCCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----eeeecCCCCceeEEEEEEEEe----------CCcEEEEecCccccch
Confidence 48999999999999999999864 43 222 112223444432 3678999999998763
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.45 E-value=0.00065 Score=64.86 Aligned_cols=58 Identities=22% Similarity=0.201 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.+.+ ....|+.+-..... ..+..+.++||+|..+
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~----~~~~~-~~~~t~~~~~~~~~------~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN----VDVQS-YSFTTKNLYVGHFD------HKLNKYQIIDTPGLLD 88 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC----EEEEC-C-----CEEEEEEE------ETTEEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CccCC-CCCcceeeeeeeee------cCCCeEEEEECCCCcC
Confidence 48899999999999999999853 66443 23456655543221 1346789999999865
No 12
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.44 E-value=0.00049 Score=63.24 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee--eeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG--VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~--vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
-|.|+|+.++|||+|+|+|++.. |. +.++ ..+|..+-.+.. +..+.++||+|+++....
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~----~~~~~~~~-~~~t~~~~~~~~---------~~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK----NLARTSSK-PGKTQTLNFYII---------NDELHFVDVPGYGFAKVS 85 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC------------------CCEEEEEE---------TTTEEEEECCCBCCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CccccCCC-CCceeeEEEEEE---------CCcEEEEECCCCCccccC
Confidence 48999999999999999999853 22 2222 233444333211 125889999998775443
No 13
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.40 E-value=0.00022 Score=72.11 Aligned_cols=54 Identities=30% Similarity=0.467 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee-eec---CcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV-GHM---RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v-g~~---~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
.|+|+|+.++|||+|+|+|+|.. +.. ++. +.....|+..| .+..+.++||+|..
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~----~~i~s~~~~tTr~~~~gi~~~----------~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQK----ISITSRKAQTTRHRIVGIHTE----------GAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS----EEECCCCSSCCSSCEEEEEEE----------TTEEEEEESSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ccccCCCCCcceeeEEEEEEE----------CCeeEEEEECcCCC
Confidence 68999999999999999999863 443 221 11122455433 35678899999975
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.35 E-value=0.00016 Score=71.76 Aligned_cols=64 Identities=25% Similarity=0.240 Sum_probs=37.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|+|+|..++|||+|+|.|++.. .|.... +....|.++-.....+ ..+|....+.++||+|+++.
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~---~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD---LYSPEYPGPSHRIKKTVQVEQSKVLI--KEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC---C---------------CCCEEEEEEE--CC--CCEEEEEEECCCCSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC---ccccCCCCcccccCCceEEEEEEEEE--ecCCeEEEEEEEECCCcccc
Confidence 8899999999999999999863 343321 0012233333222211 22355678999999999874
No 15
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.35 E-value=0.0004 Score=61.42 Aligned_cols=60 Identities=25% Similarity=0.185 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|.|+|+.++|||+|+|+|.+.. +.......+.|......... ..+..+.++||+|....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR----SAVVADVPGVTRDLKEGVVE------TDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC----C-----------CCEEEEEE------ETTEEEEEEECGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----eeeccCCCCceecceEEEEE------eCCceEEEEECCCCCCc
Confidence 37899999999999999999853 33222222333333222211 12457889999998653
No 16
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.28 E-value=0.0002 Score=70.79 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|.|+|..++|||+|+|.|++.. -+.+++. .++|...... ..+..+..+.++||+|+++..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~---~~~~~~~-~~~t~~~~~~------~~~~~~~~l~iiDTpG~~~~~ 101 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER---VVSISPF-QSEGPRPVMV------SRSRAGFTLNIIDTPGLIEGG 101 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC---CSCCCSS-SCCCSSCEEE------EEEETTEEEEEEECCCSEETT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---cccccCC-CCcceeeEEE------EEeeCCeEEEEEECCCCCCCc
Confidence 48899999999999999999863 1223322 2333221111 112346789999999997743
No 17
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.10 E-value=0.00053 Score=67.57 Aligned_cols=61 Identities=20% Similarity=0.155 Sum_probs=39.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|.|+|..++|||+|+|.|++.. ...+++ ..++|...-.-. ....+..+.++||+|+++..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~---~~~~~~-~~~~t~~~~~~~------~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ---VVRVSP-FQAEGLRPVMVS------RTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC---CSCCCS-SCC-CCCCEEEE------EEETTEEEEEEECCCSEETT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CcccCC-CCCcceeeEEEE------EEECCeeEEEEECCCCCCcc
Confidence 48999999999999999999863 222322 123332221111 01245689999999997743
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.08 E-value=0.00071 Score=60.21 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=38.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.. ....|.|.-........ ++....+.++||+|...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dt~G~~~ 67 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS----FDP---NINPTIGASFMTKTVQY--QNELHKFLIWDTAGLER 67 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC----CCT---TCCCCCSEEEEEEEEEE--TTEEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCC---CCCCceeEEEEEEEEEE--CCeEEEEEEEcCCCchh
Confidence 37899999999999999999863 321 11223343322222221 34567899999999754
No 19
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.07 E-value=0.00073 Score=60.02 Aligned_cols=60 Identities=22% Similarity=0.264 Sum_probs=38.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.. ....|.|.-.-...+.. ++....+.++||+|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~ 64 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND----FAE---NKEPTIGAAFLTQRVTI--NEHTVKFEIWDTAGQER 64 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCT---TCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCC---CCCCccceeEEEEEEEE--CCEEEEEEEEECCCChh
Confidence 37899999999999999999863 321 11223343322222221 35567899999999543
No 20
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.06 E-value=0.0009 Score=66.13 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=40.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+++|+.++|||+|+|.|.|.. |.+++.. ..|....... +. ..+..+.++||+|..+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~----~~~~~~~-~~t~~~~~~~--~~----~~~~~~~l~DtpG~~~~ 63 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR----QHVGNWP-GVTVEKKEGI--ME----YREKEFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC----EEEEECT-TSSCEEEEEE--EE----ETTEEEEEEECCCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----cccCCCC-CeEEEeeEEE--EE----ECCceEEEEeCCCcccc
Confidence 58999999999999999999864 6666532 2333322211 11 12456899999998764
No 21
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.06 E-value=0.001 Score=65.72 Aligned_cols=60 Identities=23% Similarity=0.120 Sum_probs=41.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|+++|..++|||+|+|.|.|.. +.+++.. +.|...-..... ..+..+.++||+|..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~----~~v~~~p-g~Tv~~~~~~~~------~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN----QRVGNWP-GVTVEKKTGEFL------LGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----EEEEECT-TSSSEEEEEEEE------ETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----CCccCCC-CceEEEEEEEEE------ECCeEEEEEeCCCccccc
Confidence 58999999999999999999863 6666542 333322221111 124588999999987643
No 22
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.02 E-value=0.0032 Score=62.56 Aligned_cols=60 Identities=28% Similarity=0.216 Sum_probs=40.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|+++|..++|||+|+|+|.|.. +.+++.. ..|...-.-. + ...+..+.++||+|..+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~----~~v~~~~-g~t~~~~~~~--~----~~~~~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR----QRVGNWA-GVTVERKEGQ--F----STTDHQVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC----EEEEECT-TSSSEEEEEE--E----ECSSCEEEEEECCCCSCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----cccCCCC-CeeEEEEEEE--E----EeCCCceEEEECcCCCccc
Confidence 58999999999999999999863 7776532 2232211110 1 1134578899999987754
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.02 E-value=0.00085 Score=60.34 Aligned_cols=59 Identities=31% Similarity=0.342 Sum_probs=37.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |.... ..|.|+-.-...+. .++....+.++||+|...
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~----~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT----FSGSY---ITTIGVDFKIRTVE--INGEKVKLQIWDTAGQER 70 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC-------CC---TTTBSEEEEEEEEE--ETTEEEEEEEEEETTGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCcc---CCCceeEEEEEEEE--ECCEEEEEEEEcCCCchh
Confidence 7899999999999999999853 43211 22333322222222 235568899999999654
No 24
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.01 E-value=0.00068 Score=61.01 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=38.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++....+.++||+|..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK----FDTQ---LFHTIGVEFLNKDLE--VDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC----CCC-------CCSEEEEEEEEE--ETTEEEEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCC---CCCceeeeEEEEEEE--ECCEEEEEEEEeCCCch
Confidence 37899999999999999999853 4321 123444333222222 23556789999999953
No 25
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.01 E-value=0.00084 Score=59.73 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee--eecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV--GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v--g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.. .++....+... . ..++....+.++||+|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~----~~~~~~~t~~~~~~~~------~--~~~~~~~~~~~~Dt~G~~~ 63 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT----FRESYIPTVEDTYRQV------I--SCDKSICTLQITDTTGSHQ 63 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC----CCSSCCCCSCEEEEEE------E--EETTEEEEEEEEECCSCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCCCCCCccccEEEE------E--EECCEEEEEEEEECCCchh
Confidence 37899999999999999999853 321 12221111111 1 1234567899999999653
No 26
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.01 E-value=0.00094 Score=60.96 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|.|+|+.++|||+|+|+|++..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999863
No 27
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.01 E-value=0.00078 Score=67.71 Aligned_cols=60 Identities=27% Similarity=0.245 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKS 74 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~ 74 (542)
.|+++|..++|||+|+|.|.|.. ...+++.. .+|+..- | +.. +..+.++||+|+......
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~---~~~~~~~~-g~T~~~~-~---~~~-----~~~~~l~DtpG~~~~~~~ 181 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKN---IAKTGDRP-GITTSQQ-W---VKV-----GKELELLDTPGILWPKFE 181 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC---CC-------------C-C---EEE-----TTTEEEEECCCCCCSCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCc---eeecCCCC-CeeeeeE-E---EEe-----CCCEEEEECcCcCCCCCC
Confidence 48999999999999999999863 34555432 3454431 1 111 125889999999875433
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.99 E-value=0.001 Score=59.06 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=37.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++....+.++||+|...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI----FTKD---YKKTIGVDFLERQIQ--VNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC----CCCC---SSCCCSSSEEEEEEE--ETTEEEEEEEECCTTGGG
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCCC---CCCceEEEEEEEEEE--ECCEEEEEEEEcCCCcHh
Confidence 37899999999999999999853 3211 122222211111111 134567899999999644
No 29
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.98 E-value=0.0014 Score=59.19 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=36.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+++|+.++|||+|+|+|.|.. |.++. +++.. .|...+ .+..+-++||+|....
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~----~~~~~~~~~t~~~~-~~~~~~----------~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN----VYIGNWPGVTVEKK-EGEFEY----------NGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS----SSCC-----CCCCC-EEEEEE----------TTEEEEEEECCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----eeccCCCCcceeee-EEEEEE----------CCcEEEEEECCCcccC
Confidence 58999999999999999999853 33322 11111 111111 2467889999997653
No 30
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.98 E-value=0.00094 Score=59.28 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=38.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- ....|.|.=.....+.. ++....+.++||+|...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~----~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~G~~~ 67 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ----FHE---FQESTIGAAFLTQTVCL--DDTTVKFEIWDTAGQER 67 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCT---TCCCCSSEEEEEEEEEE--TTEEEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCC---CCCCccceEEEEEEEEE--CCEEEEEEEEeCCCcHH
Confidence 37899999999999999999753 321 11223333222222221 34577899999999643
No 31
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.98 E-value=0.00073 Score=60.99 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ...|.|+-.....+. .++....+.++||+|...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~----~~~~~--~~~t~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA----FLAGT--FISTVGIDFRNKVLD--VDGVKVKLQMWDTAGQER 72 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCCCC--CCCCCSCEEEEEEEE--ETTEEEEEEEEECCCC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CCCCC--cCCceeeEEEEEEEE--ECCEEEEEEEEeCCCcHH
Confidence 37899999999999999999863 42211 123344333222222 235667899999999543
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.96 E-value=0.00084 Score=60.26 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=38.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |... ...|.|+-.....+. .++....+.++||+|...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~Dt~G~~~ 75 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS----FDNT---YQATIGIDFLSKTMY--LEDRTVRLQLWDTAGQER 75 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC----CCSS---CCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCC---CCCceeeEEEEEEEE--ECCeEEEEEEEECCCcHH
Confidence 37899999999999999999753 4321 122334322222222 235567899999999543
No 33
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.96 E-value=0.0012 Score=61.18 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=39.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |... ...|.|.-.....+. .++....+.++||+|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK----FSNQ---YKATIGADFLTKEVM--VDDRLVTMQIWDTAGQER 69 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC----CCSS---CCCCCSEEEEEEEEE--SSSCEEEEEEEEECSSGG
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCCC---CCCcccceEEEEEEE--ECCEEEEEEEEeCCCcHH
Confidence 47899999999999999999863 3311 122334332222222 235667899999999644
No 34
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.95 E-value=0.001 Score=59.24 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |... ...|.|.-.-...+ ..++....+.++||+|...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~----~~~~---~~~t~~~~~~~~~~--~~~~~~~~l~i~Dt~G~~~ 67 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK----FNDK---HITTLGASFLTKKL--NIGGKRVNLAIWDTAGQER 67 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC----CCSS---CCCCCSCEEEEEEE--ESSSCEEEEEEEECCCC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCcC---CCCccceEEEEEEE--EECCEEEEEEEEECCCcHh
Confidence 37899999999999999999753 3211 11233322111111 1245677899999999543
No 35
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.94 E-value=0.0015 Score=64.52 Aligned_cols=60 Identities=20% Similarity=0.079 Sum_probs=41.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|+++|..++|||+|+|+|.|.. |.++... ..|...-.... ...+..+.++||+|..+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~----~~~~~~p-g~tv~~~~~~~------~~~~~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK----QYVANWP-GVTVEKKEGVF------TYKGYTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC----EEEEECT-TSCCEEEEEEE------EETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----CcccCCC-CceEEEEEEEE------EECCeEEEEEECCCcCccC
Confidence 48999999999999999999863 6666532 33333222111 1235789999999987643
No 36
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.93 E-value=0.00091 Score=60.04 Aligned_cols=59 Identities=29% Similarity=0.352 Sum_probs=37.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|..++|||+|+|+|.+.. |.. ..+.|.|.-.-...+. .++....+.++||+|..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~----~~~---~~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK----FMA---DCPHTIGVEFGTRIIE--VSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCS---SCTTSCCCCEEEEEEE--ETTEEEEEEEEECTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCC---CCCCccceEEEEEEEE--ECCeEEEEEEEECCCCh
Confidence 37899999999999999999863 321 1122333211111111 23456789999999954
No 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.92 E-value=0.0011 Score=59.32 Aligned_cols=59 Identities=22% Similarity=0.223 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |..... |.|.=.....+ ..++....+.++||+|...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~----~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ----ERDLHE----QLGEDVYERTL--TVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC---------CC----CSSSSEEEEEE--EETTEEEEEEEECCC----
T ss_pred EEEEECCCCccHHHHHHHHhcCC----CccccC----ccccceeEEEE--EECCEEEEEEEEecCCCCc
Confidence 38999999999999999999853 332111 12211111111 1235567899999999755
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.91 E-value=0.00088 Score=59.80 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=33.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. +...+.. +.|.... ...+ ..++....+.+.||+|...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~----~~~~~~~-~~~~~~~--~~~~--~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ----GDHAHEM-ENSEDTY--ERRI--MVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-----------------CEE--EEEE--EETTEEEEEEEECCCCC--
T ss_pred EEEECCCCCCHHHHHHHHHhcc----CcccccC-CCcCCee--eEEE--EECCeEEEEEEEECCCccc
Confidence 7899999999999999999753 2211110 1111111 1111 1245678899999999765
No 39
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.88 E-value=0.0013 Score=58.00 Aligned_cols=58 Identities=31% Similarity=0.329 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |.- ...+ |.|... ... ...++....+.++||+|..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~----~~~--~~~~-~~~~~~-~~~--~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT----FIE--KYDP-TIEDFY-RKE--IEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC----CCS--CCCT-TCCEEE-EEE--EEETTEEEEEEEEECCCTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----Ccc--cCCC-CcceeE-EEE--EEECCEEEEEEEEECCCch
Confidence 38999999999999999999753 321 1112 222221 111 1223556779999999954
No 40
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.87 E-value=0.0013 Score=60.08 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|+|.+.. +. +.+ ..+.|.+... ..+ .. .+..+.++||+|...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~~----~~~~~~-~~~~t~~~~~--~~~--~~--~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGRE----AAIVTD-IAGTTRDVLR--EHI--HI--DGMPLHIIDTAGLRE 64 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC----CSCCCS-STTCCCSCEE--EEE--EE--TTEEEEEEECCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----cceeeC-CCCceeceee--EEE--EE--CCeEEEEEECCCccc
Confidence 48899999999999999999853 22 221 1122322111 001 11 234578999999854
No 41
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.87 E-value=0.0012 Score=60.69 Aligned_cols=60 Identities=23% Similarity=0.298 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.-...+. .++....+.++||+|...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE----FSHD---SRTTIGVEFSTRTVM--LGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC----CCSS---CCCCSSEEEEEEEEE--ETTEEEEEEEEEESCCCT
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCCC---CCCccceeEEEEEEE--ECCEEEEEEEEeCCCchh
Confidence 37899999999999999999863 3311 122333322222111 134567899999999754
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.86 E-value=0.00092 Score=59.48 Aligned_cols=60 Identities=30% Similarity=0.368 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|.=.-... ...++....+.++||+|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~----~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK----FNPSF---ITTIGIDFKIKT--VDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC----CCC----------CCEEEEE--EESSSCEEEEEEECCTTGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CCCCC---CCccceeEEEEE--EEECCEEEEEEEEeCCCChh
Confidence 37899999999999999999863 32111 112221100001 11235567899999999654
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.85 E-value=0.0012 Score=60.08 Aligned_cols=61 Identities=26% Similarity=0.224 Sum_probs=36.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEee-ecccccc-------cCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVW-GNPVEME-------IDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW-~~p~~~~-------~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.- ...+... ..+....+.++||+|..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK----FNSK---FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCCS---CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcC---cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 37899999999999999999853 3211 1223333211 0011110 01226789999999974
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.79 E-value=0.0023 Score=56.67 Aligned_cols=58 Identities=28% Similarity=0.199 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |.-. ...|.|.-.- .. ...++....+.++||+|...
T Consensus 6 i~v~G~~~~GKssli~~l~~~~----~~~~---~~~t~~~~~~-~~--~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI----FVEK---YDPTIEDSYR-KQ--VEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC----CCCS---CCCCSEEEEE-EE--EESSSCEEEEEEEEECSSCS
T ss_pred EEEECCCCCCHHHHHHHHHcCC----CCCC---CCCCccceEE-EE--EEECCEEEEEEEEECCChHH
Confidence 7899999999999999999753 3211 1223332221 11 12245678899999999654
No 45
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.78 E-value=0.00088 Score=69.14 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|++++|||+|+|.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999995
No 46
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.76 E-value=0.0016 Score=73.46 Aligned_cols=22 Identities=36% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|.+++|||+|+|.|+|.
T Consensus 71 ~V~VvG~~naGKSSLlNaLlg~ 92 (695)
T 2j69_A 71 RLLVLGDMKRGKSTFLNALIGE 92 (695)
T ss_dssp EEEEECCTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.76 E-value=0.0017 Score=57.34 Aligned_cols=57 Identities=30% Similarity=0.254 Sum_probs=35.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|+|++.. |.- . .+.|.|.-.- ..+ ..++....+.++||+|..
T Consensus 7 i~v~G~~~~GKssl~~~l~~~~----~~~--~-~~~t~~~~~~-~~~--~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYDE----FVE--D-YEPTKADSYR-KKV--VLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC----CCS--C-CCTTCCEEEE-EEE--EETTEEEEEEEEECCC--
T ss_pred EEEECCCCCCHHHHHHHHHhCc----cCC--C-CCCCcceEEE-EEE--EECCEEEEEEEEECCCcc
Confidence 7899999999999999999853 321 1 1122232211 111 123556789999999954
No 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.0019 Score=58.92 Aligned_cols=60 Identities=28% Similarity=0.348 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.. ....|.|+-.....+. .++....+.++||+|...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~----~~~---~~~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT----FDP---ELAATIGVDFKVKTIS--VDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCT---TCCCCCSEEEEEEEEE--ETTEEEEEEEEEECSSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCc---cCCCccceEEEEEEEE--ECCeEEEEEEEeCCCchh
Confidence 37899999999999999999863 331 1122333332222222 235568899999999654
No 49
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.74 E-value=0.0019 Score=59.58 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.- ....|.|.-.....+. .++....+.++||+|...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~----~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH----FDH---NISPTIGASFMTKTVP--CGNELHKFLIWDTAGQER 84 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC----CCT---TCCCCSSEEEEEEEEE--CSSSEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCC---CcCCCcceeEEEEEEE--eCCEEEEEEEEcCCCchh
Confidence 37899999999999999999863 321 1122333322222222 235677899999999643
No 50
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.74 E-value=0.0007 Score=69.84 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|+|+|.+++|||+|+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
No 51
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.74 E-value=0.0018 Score=64.83 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.|+|+|.+++|||+|+|.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 52
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.73 E-value=0.0017 Score=60.15 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=38.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.-...+. .++....+.++||+|...
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 69 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS----FTPA---FVSTVGIDFKVKTIY--RNDKRIKLQIWDTAGLER 69 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC----CCSC---CCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---cCCccceeEEEEEEE--ECCeEEEEEEEECCCchh
Confidence 7899999999999999999863 3211 122334322211111 235567899999999743
No 53
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.73 E-value=0.0014 Score=59.46 Aligned_cols=59 Identities=29% Similarity=0.383 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|.-.....+. .++....+.++||+|..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK----FKDD---SNHTIGVEFGSKIIN--VGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS----CCTT---CCCCSEEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCC---CCCccceEEEEEEEE--ECCEEEEEEEEeCCCcH
Confidence 37899999999999999999853 3321 122333222111111 23456789999999954
No 54
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.72 E-value=0.0032 Score=56.54 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|.|+|+.++|||+|+|+|.+.. |..... ...|..+-.+ .+ .. .+..+.++||+|...
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~----~~~~~~-~~~~~~~~~~--~~--~~--~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSK----VTEQEA-GGITQHIGAY--QV--TV--NDKKITFLDTPGHEA 67 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTC----SSCSSC-CSSSTTCCCC--EE--EE--TTEEEEESCCCSSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc----cccCCC-CceeEeeeEE--EE--Ee--CCceEEEEECCCCHH
Confidence 58999999999999999999853 432211 0111111111 01 11 235678999999754
No 55
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.71 E-value=0.0019 Score=58.11 Aligned_cols=59 Identities=20% Similarity=0.281 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccC-CCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEID-GSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~-g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|.-.....+ ..+ +....+.++||+|..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK----YSQQ---YKATIGADFLTKEV--TVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC----CCTT---C---CCCSCEEEEE--CCSSSCCEEEEEECCC---
T ss_pred EEEEECCCCCCHHHHHHHHHhCc----CCcc---cCCccceEEEEEEE--EEcCCcEEEEEEEECCCCh
Confidence 37899999999999999999863 3211 11122211111111 112 456789999999954
No 56
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.69 E-value=0.0035 Score=57.05 Aligned_cols=59 Identities=24% Similarity=0.175 Sum_probs=38.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+++|+.++|||+|+|+|.+.. |.++... ..|...-.. .+ . ..+..+.++||+|....
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~~----~~~~~~~-~~t~~~~~~--~~--~--~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGEN----VYIGNWP-GVTVEKKEG--EF--E--YNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTC----EEEEECT-TSCCEEEEE--EE--E--ETTEEEEEEECCCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----ccccCCC-CeeccceEE--EE--E--eCCcEEEEEECCCcCcc
Confidence 58999999999999999999852 5554321 122211110 01 1 13477889999997654
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.69 E-value=0.0023 Score=59.44 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=37.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|+|.+.. |... ...|.|.-. ... ...++....+.++||+|...
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE----FSEG---YDPTVENTY-SKI--VTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC----CCSC---CCCCSEEEE-EEE--EC----CEEEEEEEECCCCT
T ss_pred EEEECCCCcCHHHHHHHHHhCC----CCCC---CCCccceEE-EEE--EEECCEEEEEEEEECCCccc
Confidence 7899999999999999999864 4311 123444322 111 12235678899999999654
No 58
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.68 E-value=0.0016 Score=59.78 Aligned_cols=60 Identities=32% Similarity=0.380 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |... ...|.|+-.....+. .++....+.++||+|...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 81 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR----FPDR---TEATIGVDFRERAVD--IDGERIKIQLWDTAGQER 81 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS----CCSS---CCCCCSCCEEEEEEE--ETTEEEEEEEEECCCSHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCC---CCCCcceEEEEEEEE--ECCEEEEEEEEECCCchh
Confidence 37899999999999999999753 3211 122333221111111 235567899999999543
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.67 E-value=0.0017 Score=60.41 Aligned_cols=60 Identities=32% Similarity=0.382 Sum_probs=37.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|.-.....+ ..++....+.++||+|...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~----~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK----FNPSF---ITTIGIDFKIKTV--DINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC----CCCSS---SCCCSCCEEEEEE--EETTEEEEEEEECCTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCccc---CCcccceEEEEEE--EECCEEEEEEEEeCCCcHH
Confidence 37899999999999999999753 43211 1122211111111 1234567899999999654
No 60
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.67 E-value=0.0016 Score=58.82 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=36.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|++.. |... ...|.|.-.....+. .++....+.++||+|...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 73 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKDQ----FVEF---QESTIGAAFFSQTLA--VNDATVKFEIWDTAGQER 73 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC----CTTT---SCCCSCCSEEEEEEE--ETTEEEEEEEEECCCSGG
T ss_pred EEEECcCCCCHHHHHHHHHcCC----CCCc---CCCCceeEEEEEEEE--ECCEEEEEEEEeCCCChh
Confidence 7899999999999999999863 3211 112222211111111 134567899999999543
No 61
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.66 E-value=0.0021 Score=58.96 Aligned_cols=60 Identities=27% Similarity=0.206 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+. .++....+.++||+|...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS----FTPA---FVSTVGIDFKVKTVY--RHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCCS---CCCCCCCEEEEEEEE--ETTEEEEEEEEECCSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCC---cCCceeEEEEEEEEE--ECCeEEEEEEEeCCCcHH
Confidence 37899999999999999999863 3211 111223222111111 134567899999999654
No 62
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.65 E-value=0.0093 Score=62.04 Aligned_cols=54 Identities=30% Similarity=0.370 Sum_probs=34.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee----eecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV----GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v----g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
+|+|+|+.++|||+|+|.|.|.. +.+ +.|.++.+.-+.+ ++..+.++||.|+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~----~~~~~~~~~T~d~~~~~i~~-----------~g~~v~l~DT~G~i~ 238 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT----QKVDTKLFTTMSPKRYAIPI-----------NNRKIMLVDTVGFIR 238 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC---------------CCSCEEEEEE-----------TTEEEEEEECCCBCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ccccCCcccccCCEEEEEEE-----------CCEEEEEEeCCCchh
Confidence 58999999999999999999863 332 2333333222221 125678999999743
No 63
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.64 E-value=0.0026 Score=55.83 Aligned_cols=58 Identities=34% Similarity=0.272 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|++.. |.- ...+ |.|.-. ...+ ..++....+.++||+|...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~----~~~--~~~~-~~~~~~-~~~~--~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH----FVD--ECDP-TIEDSY-RKQV--VIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS----CCS--CCCT-TCCEEE-EEEE--EETTEEEEEEEEECCCCSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc----Ccc--ccCC-ccceEE-EEEE--EECCEEEEEEEEECCCchh
Confidence 8899999999999999999853 321 1111 222111 1111 1235567889999999643
No 64
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.62 E-value=0.0018 Score=58.87 Aligned_cols=54 Identities=24% Similarity=0.201 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |..+... ..|.....+. . . .+.++||+|+++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~----~~~~~~~-~~t~~~~~~~------~--~--~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK----VRRGKRP-GVTRKIIEIE------W--K--NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC----CSSSSST-TCTTSCEEEE------E--T--TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC----CccCCCC-CccceeEEEe------c--C--CEEEEECCCccc
Confidence 47899999999999999999863 5543321 2222211111 0 1 577899999765
No 65
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.61 E-value=0.0012 Score=65.36 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|+|+|.+++|||+|+|+|+|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 66
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.61 E-value=0.0021 Score=58.91 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|.-.-...+. .++....+.++||+|...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~----~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 77 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT----YTESY---ISTIGVDFKIRTIE--LDGKTIKLQIWDTAGQER 77 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCSCC---CCCSSEEEEEEEEE--ETTEEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCCCC---CCcccceEEEEEEE--ECCEEEEEEEEECCCcHh
Confidence 37899999999999999999853 33211 12223222111111 234567899999999543
No 67
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.60 E-value=0.0014 Score=68.01 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=31.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeec-----CcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM-----RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~-----~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|+|+|+.++|||+|+|.|++.. -|..+.. ....|.|+-.....+ ..++....+-++||+|+++.
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~---~~~~~~~~~~~~~~~~ti~~~~~~~~~--~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD---LYPERVIPGAAEKIERTVQIEASTVEI--EERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC---C---------------CEEEEEEEEC------CEEEEEEEEC-------
T ss_pred EEEEcCCCCCHHHHHHHHhCCC---CCCCCcccCCCcccCCceeEEEEEEEe--ecCCcccceEEEEecccccc
Confidence 7899999999999999999853 2432210 011345543322222 12344567899999999764
No 68
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.60 E-value=0.011 Score=60.74 Aligned_cols=58 Identities=24% Similarity=0.216 Sum_probs=40.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+++|+.++|||+|+|.|.+.. +.+++. ...|+++-.-..+ ..+..+.++||+|..+
T Consensus 169 ~v~lvG~~gvGKSTLin~L~~~~----~~~~~~-~~~t~~~~~~~~~------~~~~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 169 TVVIAGHPNVGKSTLLKALTTAK----PEIASY-PFTTRGINVGQFE------DGYFRYQIIDTPGLLD 226 (357)
T ss_dssp EEEEECSTTSSHHHHHHHHCSSC----CEEECC-TTCSSCEEEEEEE------ETTEEEEEEECTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CccCCC-CCeeeceeEEEEE------ecCceEEEEeCCCccc
Confidence 68999999999999999999863 444432 2345554432211 1356789999999865
No 69
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=96.58 E-value=0.0018 Score=59.89 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|..++|||+|+|+|.+.. |.... ..|.|+-.....+. .++....+.++||+|..
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~----~~~~~---~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT----FCEAC---KSTVGVDFKIKTVE--LRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC---------------CCTTEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCcCC---CCccceeEEEEEEE--ECCeEEEEEEEeCCCcH
Confidence 7899999999999999999753 43211 22333322222222 23556789999999954
No 70
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.57 E-value=0.0027 Score=58.58 Aligned_cols=59 Identities=29% Similarity=0.257 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.- .. +.|.|.-.- ..+ ..++....+.++||+|...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~----~~~--~~-~~t~~~~~~-~~~--~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE----FVE--DY-EPTKADSYR-KKV--VLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCT--TC-CTTCCEEEE-EEE--EETTEEEEEEEEECCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCC--CC-CCccceEEE-EEE--EECCEEEEEEEEcCCChhh
Confidence 37899999999999999999853 321 11 222232211 111 1235567899999999643
No 71
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.57 E-value=0.0021 Score=57.02 Aligned_cols=55 Identities=22% Similarity=0.180 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|.|+|+.++|||+|+|+|.+.. |.- ..| |.|.-.. . .+..+..+.++||+|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~----~~~---~~~-t~~~~~~--~----~~~~~~~~~i~Dt~G~~~ 56 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE----IVT---TIP-TIGFNVE--T----VEYKNISFTVWDVGGQDK 56 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC----SSC---CCC-CSSCCEE--E----EECSSCEEEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----cCc---ccC-cCceeEE--E----EEECCEEEEEEEcCCChh
Confidence 37899999999999999999753 421 112 4452111 1 123467899999999743
No 72
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.57 E-value=0.003 Score=56.64 Aligned_cols=59 Identities=27% Similarity=0.172 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|++.. |.- . ...|.|.-.- .. ...++....+.++||+|...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~----~~~--~-~~~t~~~~~~-~~--~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY----FVS--D-YDPTIEDSYT-KI--CSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS----CCS--S-CCTTCCEEEE-EE--EEETTEEEEEEEEECCCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHhCc----Ccc--c-cCCCcCceEE-EE--EEECCEEEEEEEEECCCchh
Confidence 37899999999999999999853 321 1 1223333221 11 11235567889999999654
No 73
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.57 E-value=0.0027 Score=59.02 Aligned_cols=60 Identities=28% Similarity=0.310 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|+=.....+. .++....+.++||+|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 69 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT----YTNDY---ISTIGVDFKIKTVE--LDGKTVKLQIWDTAGQER 69 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC----CCTTC---CCSSCCCEEEEEEE--ETTEEEEEEEECCTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCCC---CCcccceeEEEEEE--ECCEEEEEEEEeCCChHH
Confidence 37899999999999999999863 32111 11222211111111 235567899999999654
No 74
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0016 Score=68.31 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=37.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+++|.+.+|||+|+|.|.|.. -.+++ ++.....|+.-+ ++..+.++||+|+-
T Consensus 75 V~ivG~PNvGKSTL~n~Lt~~~----~~v~~~pftT~~~~~g~~~~----------~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 75 VGFVGFPSVGKSTLLSKLTGTE----SEAAEYEFTTLVTVPGVIRY----------KGAKIQMLDLPGII 130 (376)
T ss_dssp EEEECCCCHHHHHHHHHHHSBC----CCGGGTCSSCCCEEEEEEEE----------TTEEEEEEECGGGC
T ss_pred EEEECCCCCCHHHHHHHHhCCC----CcccCCCCceeeeeeEEEEe----------CCcEEEEEeCCCcc
Confidence 8999999999999999999863 12222 111223454432 45779999999984
No 75
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.55 E-value=0.0036 Score=55.74 Aligned_cols=55 Identities=24% Similarity=0.175 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |. . ...|.|+-.-. +. ..+..+.++||+|...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~----~~---~-~~~t~~~~~~~--~~----~~~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE----VV---T-TIPTIGFNVET--VT----YKNLKFQVWDLGGLTS 63 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CC---C-CCCCSSEEEEE--EE----ETTEEEEEEEECCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CC---C-cCCcCccceEE--EE----ECCEEEEEEECCCChh
Confidence 37899999999999999998753 32 1 12244533211 11 1257889999999754
No 76
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.53 E-value=0.0037 Score=57.17 Aligned_cols=54 Identities=20% Similarity=0.219 Sum_probs=34.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |. ..+|.....+-+ . ..+..+.++||+|...
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~----~~~~~~t~~~~~~~~-------~----~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNE----VVHTSPTIGSNVEEI-------V----INNTRFLMWDIGGQES 72 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS----CEEEECCSCSSCEEE-------E----ETTEEEEEEECCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcCcCCCccceEEE-------E----ECCEEEEEEECCCCHh
Confidence 48999999999999999999753 32 333322111111 1 1357899999999753
No 77
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.52 E-value=0.0037 Score=56.64 Aligned_cols=59 Identities=31% Similarity=0.261 Sum_probs=35.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.- ...+.+ +.-.- .. ...++....+.++||+|...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~----~~~--~~~~t~-~~~~~-~~--~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH----FVD--EYDPTI-EDSYR-KQ--VVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS----CCC--CCCTTC-CEEEE-EE--EEETTEEEEEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCC--CCCCCc-hheEE-EE--EEECCcEEEEEEEECCCcHH
Confidence 37899999999999999999853 321 111222 21111 01 11235567788999999654
No 78
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.51 E-value=0.0023 Score=59.44 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=37.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|.|.|.. |.... ..|.|+-.....+ ..+|..+.+.+.||+|...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~----~~~~~---~~t~~~~~~~~~i--~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE----FNLES---KSTIGVEFATRSI--QVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC----CCC------CCCSCEEEEEEE--EETTEEEEEEEEECSSGGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCCCC---CCccceeEEEEEE--EECCEEEEEEEEECCCchh
Confidence 48999999999999999999864 43211 1122221111111 1235667788999999654
No 79
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.50 E-value=0.0018 Score=57.62 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|.++|+.++|||+|+|+|.+.. +...+ .|.|.-.- . ....++....+.+.||+|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~----~~~~~----~~~~~~~~-~--~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE----DGPEA----EAAGHTYD-R--SIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC------------------CEEE-E--EEEETTEEEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHcCcc----ccCCC----CccccceE-E--EEEECCEEEEEEEEECCCCcc
Confidence 37899999999999999998753 22111 11221110 0 111245678899999999654
No 80
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.50 E-value=0.0034 Score=56.61 Aligned_cols=59 Identities=27% Similarity=0.250 Sum_probs=37.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.- .. ..|.|.-. ... ...++....+.++||+|...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~----~~~--~~-~~t~~~~~-~~~--~~~~~~~~~~~l~Dt~G~~~ 78 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE----FVE--DY-EPTKADSY-RKK--VVLDGEEVQIDILDTAGQED 78 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCC--SC-CTTCCEEE-EEE--EEETTEEEEEEEEECCCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC----CCC--cC-CCccceEE-EEE--EEECCEEEEEEEEECCCCcc
Confidence 37899999999999999999853 421 11 22323221 111 11235567899999999643
No 81
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.46 E-value=0.0064 Score=66.75 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.|+|+|..++|||+|+|+|+|..
T Consensus 67 ~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 67 MVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999964
No 82
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.46 E-value=0.004 Score=66.45 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=33.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.|.. +. +..+ ...|... .....+..+..+.++||+|++.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~----~~~v~~~-~g~t~~~------~~~~~~~~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER----ISIVEDT-PGVTRDR------IYSSAEWLNYDFNLIDTGGIDI 83 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE----EC------------C------EEEECTTCSSCCEEECCCC---
T ss_pred EEEEECCCCCcHHHHHHHHhCCC----CcccCCC-CCcceeE------EEEEEEECCceEEEEECCCCCC
Confidence 69999999999999999999863 33 2221 1122111 1111123456788999999874
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.45 E-value=0.0039 Score=56.81 Aligned_cols=62 Identities=24% Similarity=0.183 Sum_probs=41.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeee--------ecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVG--------HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg--------~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|.|.|. |.-. .+....|.|+-.....+. ..++..+.+.++||+|...
T Consensus 17 i~vvG~~~~GKssL~~~l~~~-----~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSK-----VPEGRKGEMVSLATEDERTLFFDFLPLDIG-EVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHT-----SCGGGBCCCEEEECSSCEEEEEEECCSSCC-CSSSCEEEEEEEECCSCCS
T ss_pred EEEECCCCCCHHHHHHHHHhh-----ccccccccccccccccccceeeeecccccc-cccCCceEEEEEeCCChHH
Confidence 789999999999999998875 3211 011234666655443321 2246678899999999643
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.45 E-value=0.0047 Score=56.22 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |. ..++ .|.-.. .+.. .+..+.++||+|...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~----~~~~~~t-----~~~~~~--~~~~----~~~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE----VVHTSPT-----IGSNVE--EIVI----NNTRFLMWDIGGQES 77 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS----CEEEECC-----SSSSCE--EEEE----TTEEEEEEEESSSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCccCCc-----CceeeE--EEEE----CCEEEEEEECCCCHh
Confidence 37899999999999999999863 42 2232 232111 1111 347899999999754
No 85
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.44 E-value=0.0028 Score=58.18 Aligned_cols=59 Identities=22% Similarity=0.130 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |... ..+ |.|.-. ... ...++....+.++||+|...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~----~~~~--~~~-t~~~~~-~~~--~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT----FRDT--YIP-TIEDTY-RQV--ISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC----CCCT--TSC-CCCEEE-EEE--EEETTEEEEEEEEECCGGGS
T ss_pred EEEEECCCCCcHHHHHHHHHcCC----CCCc--ccC-ccccce-eEE--EEECCEEEEEEEEeCCChHH
Confidence 37899999999999999999853 3211 111 211111 000 11235567899999999643
No 86
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.44 E-value=0.0042 Score=57.13 Aligned_cols=59 Identities=36% Similarity=0.368 Sum_probs=35.9
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |.... ..|.|+-.-...+ ..++....+.++||+|...
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~ 82 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR----FQPVH---DLTIGVEFGARMV--NIDGKQIKLQIWDTAGQES 82 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC----CCC--------CCSSEEEEEE--EETTEEEEEEEECCTTGGG
T ss_pred EEEECcCCCCHHHHHHHHhcCC----CCCCC---CCcccceeEEEEE--EECCEEEEEEEEECCCchh
Confidence 7899999999999999999853 33211 1122211100111 1235567899999999654
No 87
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.43 E-value=0.0036 Score=56.62 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=38.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- . .+.|.|.-. ...+ ..++....+.++||+|...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~----~~~--~-~~~t~~~~~-~~~~--~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ----FVD--S-YDPTIENTF-TKLI--TVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS----CCS--C-CCTTCCEEE-EEEE--EETTEEEEEEEEECCCCCT
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCC--C-CCCCccccE-EEEE--EECCEEEEEEEEeCCCchh
Confidence 47899999999999999999642 321 1 122333322 1111 1235667889999999765
No 88
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.42 E-value=0.0026 Score=58.98 Aligned_cols=60 Identities=30% Similarity=0.307 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|++.. |.-. ...|.|+=.....+. .++....+.++||+|...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE----FREN---ISATLGVDFQMKTLI--VDGERTVLQLWDTAGQER 89 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC----CC-------------CEEEEEE--ETTEEEEEEEEECTTCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CCcc---CCCCccceeEEEEEE--ECCEEEEEEEEECCCCcc
Confidence 37899999999999999999853 3211 112333221111111 235667899999999643
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.41 E-value=0.0034 Score=58.20 Aligned_cols=60 Identities=27% Similarity=0.401 Sum_probs=38.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|+.++|||+|+|.|.|.. |... ...|.|+-.....+. .+|..+.+.+.||.|...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~----~~~~---~~~t~~~~~~~~~i~--~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE----FNLE---SKSTIGVEFATRSIQ--VDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC----CCCS---CCCCCSEEEEEEEEE--ETTEEEEEEEEEECSCCS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCCC---CCCccceEEEEEEEE--ECCEEEEEEEEECCCCcc
Confidence 58999999999999999999864 3321 122333322111111 235566777899999753
No 90
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.41 E-value=0.0033 Score=57.65 Aligned_cols=57 Identities=25% Similarity=0.241 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |.... ...|.|.-.... ++....+.++||+|...
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~----~~~~~--~~~t~~~~~~~~------~~~~~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ----SSSKH--ITATVGYNVETF------EKGRVAFTVFDMGGAKK 75 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC--------C--CCCCSSEEEEEE------EETTEEEEEEEECCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----Ccccc--cccccceeEEEE------EeCCEEEEEEECCCCHh
Confidence 48899999999999999999863 54311 123445332211 24678899999999754
No 91
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0033 Score=59.15 Aligned_cols=59 Identities=31% Similarity=0.387 Sum_probs=38.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+=.....+. .++....+.++||+|..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL----FPPG---QGATIGVDFMIKTVE--INGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS----CCTT---CCCCCSEEEEEEEEE--ETTEEEEEEEEEECCSG
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CCCC---CCCccceeEEEEEEE--ECCEEEEEEEEECCCcH
Confidence 37899999999999999999753 4321 122444322222221 23566789999999953
No 92
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.40 E-value=0.0031 Score=57.99 Aligned_cols=57 Identities=25% Similarity=0.221 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGF 68 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~ 68 (542)
|.|+|+.++|||+|+|+|.+.. |.... ..|.|+-.....+ ..++....+.++||+|.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT----FTPAF---VSTVGIDFKVKTV--YRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT----TCCCE---EEEETTTEEEEEE--EETTTTEEEEEECHHHH
T ss_pred EEEECCCCcCHHHHHHHHhcCC----CCccc---CCCeeeEEEEEEE--EECCEEEEEEEEeCCCh
Confidence 7899999999999999999853 32110 0111111111111 12356788999999994
No 93
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.37 E-value=0.0032 Score=59.02 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=37.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeeccccccc--------CCCceeEEEeecCCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEI--------DGSRTSVFYLDTEGF 68 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~--------~g~~~~vlllDTEG~ 68 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+.... +.....+.++||+|.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~----~~~~---~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK----FNPK---FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC----CCCE---EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCcC---CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 37899999999999999999853 4221 122444322222222110 011578999999994
No 94
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.35 E-value=0.0035 Score=57.46 Aligned_cols=64 Identities=25% Similarity=0.249 Sum_probs=35.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccc-cCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEME-IDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~-~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|+|.+.. ..|. +....|.|+-.-...+... .++....+-+.||.|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~--~~~~---~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK--KSDL---GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--CccC---CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 48999999999999999999841 1232 1123455655433222211 123567888999999643
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=59.71 Aligned_cols=59 Identities=31% Similarity=0.397 Sum_probs=33.6
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|++.. |.... ..|.|+-.-...+ ..++....+.++||+|...
T Consensus 28 i~v~G~~~~GKSsLi~~l~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~l~l~Dt~G~~~ 86 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIENK----FKQDS---NHTIGVEFGSRVV--NVGGKTVKLQIWDTAGQER 86 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC-------------------CCEEEEEE--EETTEEEEEEEECCTTHHH
T ss_pred EEEECcCCCCHHHHHHHHHhCC----CCccC---CCcccceeEEEEE--EECCeeeEEEEEcCCCcHh
Confidence 7899999999999999999753 43211 1122211111111 1234567899999999643
No 96
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.002 Score=59.13 Aligned_cols=54 Identities=26% Similarity=0.293 Sum_probs=33.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeee-ecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG-HMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg-~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|.|+|+.++|||+|+|+|.+.. |... .+..+ |.+. +.....+.++||+|....
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~----~~~~~~~~~~-~~~~-----------~~~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS----VRPTVVSQEP-LSAA-----------DYDGSGVTLVDFPGHVKL 104 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS----CC------------------------CCCCTTCSEEEETTCCBS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcccccCCC-ceee-----------eecCCeEEEEECCCCchH
Confidence 58999999999999999999863 3211 11111 1111 013456778899998653
No 97
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.32 E-value=0.0026 Score=67.59 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=34.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eee---cCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|+|+|+.++|||+|+|.|+|.. +. +++ ++...+.|.+.+. +..+.++||+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~----~~~v~~~~gtT~d~~~~~i~~~----------g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKE----RALVSPIPGTTRDPVDDEVFID----------GRKYVFVDTAGLR 239 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST----TEEECCCC------CCEEEEET----------TEEEEESSCSCC-
T ss_pred eEEEECCCCCCHHHHHHHHhCCc----ccccCCCCCCcCCceEEEEEEC----------CEEEEEEECCCCc
Confidence 48999999999999999999863 22 222 1112233444332 3467889999974
No 98
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.29 E-value=0.002 Score=73.37 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
-|+|+|.+++|||+|+|.|+|..
T Consensus 53 ~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 53 QIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp EEEEEECTTTCHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58999999999999999999963
No 99
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=96.29 E-value=0.0045 Score=58.07 Aligned_cols=58 Identities=22% Similarity=0.220 Sum_probs=36.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeee--eecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGV--GHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~v--g~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|..++|||+|+|+|++.. |.- .++....+..+.. . ..++....+.++||+|...
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~----~~~~~~~t~~~~~~~~~~-----~-~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR----FEKNYNATVGAVNHPVTF-----L-DDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS----TTCEEETTTTEEEEEEEE-----E-BTTSCEEEEEEEEECSGGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCCCCCccceeeEEEEE-----E-eCCCcEEEEEEEecCCchh
Confidence 7899999999999999999753 321 2222111111111 1 1123347899999999754
No 100
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.29 E-value=0.0053 Score=56.67 Aligned_cols=58 Identities=28% Similarity=0.242 Sum_probs=38.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.-. ... ...++....+.++||+|...
T Consensus 31 i~v~G~~~vGKSsli~~l~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 31 LAIFGRAGVGKSALVVRFLTKR----FIWE---YDPTLESTY-RHQ--ATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC----CCSC---CCTTCCEEE-EEE--EEETTEEEEEEEEECCCCCC
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCcc---cCCCCCceE-EEE--EEECCEEEEEEEEECCCCCc
Confidence 7899999999999999999853 4211 122333221 111 12245677899999999765
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.28 E-value=0.0065 Score=56.14 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|+.++|||+|+|+|.+.. |. ..+ |.|.-.. .+.. .+..+.++||+|...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~~----~~~~~~-----t~~~~~~--~~~~----~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKNDR----LATLQP-----TWHPTSE--ELAI----GNIKFTTFDLGGHIQ 79 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC----CCCCCC-----CCSCEEE--EEEE----TTEEEEEEECCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCcccc-----CCCCCeE--EEEE----CCEEEEEEECCCCHH
Confidence 47899999999999999999853 42 122 3232111 1111 237889999999754
No 102
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.26 E-value=0.0049 Score=64.17 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=38.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC--CCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS--CDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~--~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|+++|..++|||+|+|.|++.. ......+++.. .+|++.-... . +. .+.++||||+.+.
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-gtT~~~~~~~----~---~~--~~~liDtPG~~~~ 225 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP-GTTLDMIEIP----L---ES--GATLYDTPGIINH 225 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT-TSSCEEEEEE----C---ST--TCEEEECCSCCCC
T ss_pred cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC-CeEEeeEEEE----e---CC--CeEEEeCCCcCcH
Confidence 37899999999999999999851 00123444432 3455543211 1 11 2789999999764
No 103
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.25 E-value=0.0046 Score=55.83 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- .. ..|.|.-. ...+ ..++....+.++||+|...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~----~~~--~~-~~t~~~~~-~~~~--~~~~~~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA----FPG--EY-IPTVFDNY-SANV--MVDGKPVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CCS--SC-CCCSCCEE-EEEE--EETTEEEEEEEECCCCSGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCC--Cc-CCccccee-EEEE--EECCEEEEEEEEECCCCHh
Confidence 37899999999999999999753 321 11 11222111 1111 1245677888999999754
No 104
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0042 Score=58.04 Aligned_cols=59 Identities=25% Similarity=0.237 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|.-.... ...++....+.++||+|...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~~---~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE----FPEV---YVPTVFENYVAD---IEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS----CC----------CCEEEEE---EEETTEEEEEEEEECTTCTT
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CCCc---CCCcccceEEEE---EEECCEEEEEEEEECCCcHH
Confidence 37899999999999999999853 3311 112222221111 11235567899999999754
No 105
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=96.24 E-value=0.0017 Score=60.01 Aligned_cols=61 Identities=30% Similarity=0.397 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCC--ceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGS--RTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~--~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. ..|.- ....|.|+-.....+.. ++. ...+.++||+|..
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~~--~~~~~---~~~~t~~~~~~~~~~~~--~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSKG--SKFLK---DYAMTSGVEVVVAPVTI--PDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEC---------------------------------------CEEEEC--TTSSEEEEEEEEETTTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CcccC---CCCCccceEEEEEEEEE--CCcccEEEEEEEECCCcH
Confidence 37899999999999999999751 12421 11334443222222222 244 6789999999974
No 106
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.005 Score=58.30 Aligned_cols=59 Identities=32% Similarity=0.408 Sum_probs=36.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |.... ..|.|+=.....+ ..++....+.++||+|...
T Consensus 16 i~v~G~~~vGKSsli~~l~~~~----~~~~~---~~t~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~ 74 (223)
T 3cpj_B 16 IVLIGDSGVGKSNLLSRFTKNE----FNMDS---KSTIGVEFATRTL--EIEGKRIKAQIWDTAGQER 74 (223)
T ss_dssp EEEESCTTSSHHHHHHHHHHCC----CCC---------CCSEEEEEE--EETTEEEEEEEECCTTTTT
T ss_pred EEEECcCCCCHHHHHHHHhcCC----CCCCC---CCcccceeEEEEE--EECCEEEEEEEEECCCccc
Confidence 7899999999999999999863 43211 1122211111111 1234567899999999654
No 107
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.22 E-value=0.0023 Score=63.54 Aligned_cols=58 Identities=29% Similarity=0.354 Sum_probs=34.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|.++|..++|||+|+|.|.|.. ...++++. ..|++.-. +.. +..+.++||+|+.+..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~---~~~~~~~~-g~T~~~~~----~~~-----~~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR---ASSVGAQP-GITKGIQW----FSL-----ENGVKILDTPGILYKN 158 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC---C-----------CCSCE----EEC-----TTSCEEESSCEECCCC
T ss_pred heEEeCCCCCCHHHHHHHHhccc---ccccCCCC-CCccceEE----EEe-----CCCEEEEECCCcccCc
Confidence 47899999999999999999863 12344432 33443311 111 2357789999998754
No 108
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.22 E-value=0.0058 Score=55.57 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. +. ....|.|.-.-. +.. ++..+.++||+|..
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~----~~----~~~~t~~~~~~~--~~~----~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED----VD----TISPTLGFNIKT--LEH----RGFKLNIWDVGGQK 73 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC----CS----SCCCCSSEEEEE--EEE----TTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CC----cccccCccceEE--EEE----CCEEEEEEECCCCH
Confidence 37899999999999999999752 11 112244432211 111 35788999999974
No 109
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.21 E-value=0.0017 Score=58.46 Aligned_cols=61 Identities=21% Similarity=0.240 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.....+... ++....+.+.||+|...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~----~~~~---~~~t~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET----FGKQ---YKQTIGLDFFLRRITLP-GNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG----TTHH---HHHTTTSSEEEEEEEET-TTEEEEEEEEECTTCCT
T ss_pred EEEEECcCCCCHHHHHHHHHhCc----CCCC---CCCceeEEEEEEEEEeC-CCCEEEEEEEECCCCcc
Confidence 37899999999999999999853 4211 11233321111111111 12357899999999643
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.21 E-value=0.0099 Score=55.23 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+++|+.++|||+|+|.|.|.
T Consensus 28 ~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 28 EVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 111
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.20 E-value=0.0073 Score=55.10 Aligned_cols=58 Identities=28% Similarity=0.234 Sum_probs=38.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.-. ... ...++....+.+.||+|...
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC----FPEN---YVPTVFENY-TAS--FEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC----CCSS---CCCCSEEEE-EEE--EECSSCEEEEEEEEECCSGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---CCCccceeE-EEE--EEECCEEEEEEEEECCCChh
Confidence 7899999999999999999853 4311 122333221 111 12245678899999999654
No 112
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.20 E-value=0.0071 Score=64.09 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=29.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..++|||+|+|+|.|.. +. +.++ ...|...-.. .....+..+.++||+|...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~----~~~v~~~-~g~T~d~~~~------~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER----ISIVEDT-PGVTRDRIYS------SAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE----CC------------CEEE------ECTTCSSCCEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----ceeecCC-CCCccceEEE------EEEECCceEEEEECCCCCC
Confidence 69999999999999999999863 33 2221 1223221111 1112345788999999863
No 113
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.20 E-value=0.004 Score=62.10 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=36.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
.|+++|+.++|||+|+|+|.|.. +.+++.. ..|.. +.....+. +..+.++||+|..+.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~----~~v~~~p-g~tv~------~~~~~~~~-~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN----QRVGNWP-GVTVE------RKSGLVKK-NKDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC----CCCCSSS-CCCCS------CEEEECTT-CTTEEEEECCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----CcccCCC-CCcEE------EEEEEEec-CCeEEEEECCCcCcc
Confidence 48999999999999999999853 3333221 11111 00001123 567889999998764
No 114
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.19 E-value=0.0072 Score=54.69 Aligned_cols=59 Identities=29% Similarity=0.177 Sum_probs=36.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|.-. .... ..++....+-++||+|...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~----~~~~~---~~t~~~~~-~~~~--~~~~~~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI----FVDDY---DPTIEDSY-LKHT--EIDNQWAILDVLDTAGQEE 78 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCSCC---CTTCCEEE-EEEE--EETTEEEEEEEEECCSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCCC---CCCcccee-EEEE--EeCCcEEEEEEEECCCchh
Confidence 37899999999999999999753 32111 12233222 1111 1234556677899999643
No 115
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.19 E-value=0.0028 Score=65.23 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|+|.|.|.
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999964
No 116
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=96.19 E-value=0.0021 Score=58.37 Aligned_cols=59 Identities=29% Similarity=0.324 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.-...+. .++....+.++||+|...
T Consensus 11 i~v~G~~~~GKssl~~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 11 LLLIGDSGVGKTCVLFRFSEDA----FNST---FISTIGIDFKIRTIE--LDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEECCCCC--------------------C---HHHHHCEEEEEEEEE--ETTEEEEEEEEEC-----
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCCC---CCCcccceeEEEEEE--ECCEEEEEEEEcCCCChh
Confidence 7899999999999999999753 4321 122333322111111 235568899999999643
No 117
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.19 E-value=0.0043 Score=65.34 Aligned_cols=65 Identities=17% Similarity=0.183 Sum_probs=35.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccc-------------cCC-CceeEEEee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEME-------------IDG-SRTSVFYLD 64 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~-------------~~g-~~~~vlllD 64 (542)
-|+|+|..++|||+|+|+|.+.. ..+++ ++...+.|+..+..+.+.+ .++ ..+.+.++|
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~----~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvD 77 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD----VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVD 77 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEE
Confidence 48999999999999999999852 33332 2223456775543222211 011 136799999
Q ss_pred cCCccc
Q 009154 65 TEGFES 70 (542)
Q Consensus 65 TEG~~~ 70 (542)
|+|+..
T Consensus 78 tpG~~~ 83 (397)
T 1wxq_A 78 VAGLVP 83 (397)
T ss_dssp CC----
T ss_pred CCCccc
Confidence 999853
No 118
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.18 E-value=0.015 Score=61.74 Aligned_cols=54 Identities=26% Similarity=0.352 Sum_probs=34.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eee----cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGH----MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~----~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+|+|..+.|||+|+|+|.|.. +. +.+ |+++ ..|...|. +..+.++||+|+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~----~~~v~~~~g~T~d~-~~~~~~~~----------~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK----KAIVEDEEGVTRDP-VQDTVEWY----------GKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC------------------CC-SEEEEEET----------TEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CceecCCCCCccce-eeEEEEEC----------CeEEEEEECCCccc
Confidence 58999999999999999999863 22 222 2211 23344342 34678899999864
No 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.18 E-value=0.0055 Score=55.95 Aligned_cols=58 Identities=33% Similarity=0.263 Sum_probs=36.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|..++|||+|+|+|++.. |.- ...+ |.|.-.. .. ...++....+.++||+|..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~----~~~--~~~~-t~~~~~~-~~--~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH----FVD--EYDP-TIEDSYR-KQ--VVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CCS--CCCT-TCCEEEE-EE--EEETTEEEEEEEEECCC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----Ccc--ccCC-ccceEEE-EE--EEECCEEEEEEEEECCChH
Confidence 37899999999999999999753 321 1112 2222211 11 1123556789999999954
No 120
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.18 E-value=0.0068 Score=55.71 Aligned_cols=59 Identities=22% Similarity=0.098 Sum_probs=38.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |. .....|.|.-... . ...++....+.++||+|...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~----~~---~~~~~t~~~~~~~-~--~~~~~~~~~~~i~Dt~G~~~ 83 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE----IP---TAYVPTVFENFSH-V--MKYKNEEFILHLWDTAGQEE 83 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CC---SSCCCCSEEEEEE-E--EEETTEEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHhcCC----CC---CccCCeeeeeeEE-E--EEECCEEEEEEEEECCCcHH
Confidence 37899999999999999999863 42 1112233433321 1 12245677889999999543
No 121
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.17 E-value=0.0061 Score=55.94 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|.-... + +..+..+.++||+|..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~--~----~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ----FNED---MIPTVGFNMRK--I----TKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCCS---CCCCCSEEEEE--E----EETTEEEEEEEECCSH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCc---cCCCCceeEEE--E----EeCCEEEEEEECCCCH
Confidence 37899999999999999999753 4311 12244433221 1 1346789999999964
No 122
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.0073 Score=55.56 Aligned_cols=58 Identities=21% Similarity=0.355 Sum_probs=39.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|++++.. |.... ..|.|... .. ...++..+.+-+.||.|...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~----~~~~~---~~t~~~~~--~~--~~~~~~~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT----YVQEE---SPEGGRFK--KE--IVVDGQSYLLLIRDEGGPPE 79 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS----CCCCC---CTTCEEEE--EE--EEETTEEEEEEEEECSSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCCc---CCCcceEE--EE--EEECCEEEEEEEEECCCChh
Confidence 37899999999999999999753 43211 22444332 11 22346678888999999644
No 123
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.16 E-value=0.0025 Score=65.82 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|+|.|.|.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999974
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.16 E-value=0.0025 Score=68.82 Aligned_cols=59 Identities=27% Similarity=0.213 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|+|++.. ...+.+ ..+.|.....- .+. -.+..+.++||+|+.+
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~---~a~vs~-~~gtT~d~~~~--~i~----~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQE---RAIVSH-MPGTTRDYIEE--CFI----HDKTMFRLTDTAGLRE 293 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC----------------------CE--EEE----ETTEEEEEEC------
T ss_pred EEEEECCCCCCHHHHHHHHhCCC---CcccCC-CCCceEEEEEE--EEE----ECCeEEEEEECCCCCc
Confidence 48999999999999999999852 111221 12233322111 111 1346799999999854
No 125
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.15 E-value=0.0052 Score=57.29 Aligned_cols=54 Identities=19% Similarity=0.158 Sum_probs=32.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|+.++|||+|+|+|.+.. |. ..+|... +.+...+ .+..+.++||+|...
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~~----~~~~~~t~~~-~~~~~~~----------~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDDR----LGQHVPTLHP-TSEELTI----------AGMTFTTFDLGGHIQ 81 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC----------CCCCC-SCEEEEE----------TTEEEEEEEECC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCccCCCCCc-eeEEEEE----------CCEEEEEEECCCcHh
Confidence 37899999999999999998753 43 2223222 2222211 237889999999654
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.14 E-value=0.013 Score=62.55 Aligned_cols=100 Identities=21% Similarity=0.199 Sum_probs=51.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcc---hhh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN---VYD 78 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~---~~D 78 (542)
-|+++|..++|||+|+|+|++.. .+.+++. .+.|...-. ..+ . ..+..+.++||+|+....+.. ..-
T Consensus 197 ki~ivG~~~vGKSslin~l~~~~---~~~~~~~-~gtt~~~~~--~~~--~--~~~~~~~l~DT~G~~~~~~~~~~~e~~ 266 (456)
T 4dcu_A 197 QFCLIGRPNVGKSSLVNAMLGEE---RVIVSNV-AGTTRDAVD--TSF--T--YNQQEFVIVDTAGMRKKGKVYETTEKY 266 (456)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST---TEEECC-------CTTS--EEE--E--ETTEEEEETTGGGTTTBTTBCCCCSHH
T ss_pred eeEEecCCCCCHHHHHHHHhCCC---ccccCCC-CCeEEEEEE--EEE--E--ECCceEEEEECCCCCcCcccchHHHHH
Confidence 37899999999999999999852 3444332 112211100 001 1 124578999999986533221 111
Q ss_pred hHH---HHHHHhhhccEEEcCCCCcchHhhhhHHHH
Q 009154 79 DRI---FALATVMSSVLIYNLPETIREADISRLSFA 111 (542)
Q Consensus 79 ~~I---FaLa~LLSS~lIYN~~g~I~e~al~~L~~v 111 (542)
..+ .++.-.=.-++++.....+.+++...+..+
T Consensus 267 ~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~ 302 (456)
T 4dcu_A 267 SVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYA 302 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHH
Confidence 111 122221123456676666666665444433
No 127
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=96.12 E-value=0.0078 Score=54.96 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- . ..|.|.-... +. .++..+.++||+|...
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~----~~~---~-~~t~~~~~~~--~~----~~~~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGD----VVT---T-VPTVGVNLET--LQ----YKNISFEVWDLGGQTG 78 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSC----CEE---E-CSSTTCCEEE--EE----ETTEEEEEEEECCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCC---c-CCCCceEEEE--EE----ECCEEEEEEECCCCHh
Confidence 38899999999999999998642 431 1 1244421111 11 1367899999999754
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.11 E-value=0.0062 Score=64.77 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=33.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
-|+|+|..++|||+|+|+|++.. |...+...+.|...-. .+... .....+.++||+|..+..
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~----~~~~~~~~gtT~d~~~--~~~~~---~~~~~l~liDTpG~~d~~ 97 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQN----VSIVSDYAGTTTDPVY--KSMEL---HPIGPVTLVDTPGLDDVG 97 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC-----------------CCCCE--EEEEE---TTTEEEEEEECSSTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCccCCCCCeeeeeEE--EEEEE---CCCCeEEEEECcCCCccc
Confidence 48999999999999999999863 4221111122211110 11111 122378999999987643
No 129
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.0064 Score=54.93 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- ...|.|+-.. .+. -.+..+.++||+|...
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~----~~~----~~~t~~~~~~--~~~----~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGE----VVT----TKPTIGFNVE--TLS----YKNLKLNVWDLGGQTS 74 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSE----EEE----ECSSTTCCEE--EEE----ETTEEEEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----cCc----cCCcCccceE--EEE----ECCEEEEEEECCCCHh
Confidence 48899999999999999999642 421 1223342211 111 1247889999999765
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.09 E-value=0.0098 Score=63.03 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=49.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCee-eeecCcCccceEEeeecccccccCCCceeEEEeecCCcccccCcc---hh
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFG-VGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIGKSN---VY 77 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~-vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e~~~---~~ 77 (542)
-|+++|..++|||+|+|+|+|.. +. +++ ..+.|...-. .++.. .+..+.++||+|..+..+.. +.
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~----~~~~~~-~~gtT~d~~~--~~~~~----~~~~~~l~DT~G~~~~~~~~~~~e~ 245 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE----RVIVSN-VAGTTRDAVD--TSFTY----NQQEFVIVDTAGMRKKGKVYETTEK 245 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST----TEEEC----------CC--EEEEE----TTEEEEETTHHHHTCBTTBCCCCSH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC----ceeecC-CCCceeeeeE--EEEEE----CCeEEEEEECCCcCcCccccchHHH
Confidence 37899999999999999999863 33 332 2233333211 11111 23468899999986533321 11
Q ss_pred hhHH---HHHHHhhhccEEEcCCCCcchHhhh
Q 009154 78 DDRI---FALATVMSSVLIYNLPETIREADIS 106 (542)
Q Consensus 78 D~~I---FaLa~LLSS~lIYN~~g~I~e~al~ 106 (542)
-..+ -++.-.=.-+++|.......++++.
T Consensus 246 ~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~ 277 (436)
T 2hjg_A 246 YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKR 277 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHH
Confidence 1111 1222211234677776666666653
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.09 E-value=0.0031 Score=59.18 Aligned_cols=54 Identities=24% Similarity=0.207 Sum_probs=35.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |....+....|.|.- .....+.++||+|...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~----~~~~~~~~~~~~~~~-----------~~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS----VRPTVVSQEPLSAAD-----------YDGSGVTLVDFPGHVK 67 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CCCBCCCSSCEEETT-----------GGGSSCEEEECCCCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCeeeecCceEEEE-----------eeCceEEEEECCCcHH
Confidence 47899999999999999999863 432111111122111 1345788999999854
No 132
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=96.08 E-value=0.0054 Score=56.17 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=37.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. .|... ...|.|+-.... . -.+..+.++||+|...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~---~~~~~---~~~t~~~~~~~~--~----~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN---AQSQN---ILPTIGFSIEKF--K----SSSLSFTVFDMSGQGR 79 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG---GCCSS---CCCCSSEEEEEE--E----CSSCEEEEEEECCSTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC---CCCCC---cCCccceeEEEE--E----ECCEEEEEEECCCCHH
Confidence 37899999999999999999752 12211 123555433221 1 1247899999999654
No 133
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.07 E-value=0.0057 Score=63.66 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=36.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC---CCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD---EGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~---~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
-|+++|..++|||+|+|.|++.... ....+++. ..+|+..-... .. . .+.++||||+.+.
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-~gtT~~~~~~~----~~---~--~~~liDtPG~~~~ 224 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF-PGTTLDLIDIP----LD---E--ESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC-C----CEEEEE----SS---S--SCEEEECCCBCCT
T ss_pred eEEEecCCCCChhHHHHHHHhhhccccccceecCCC-CCeecceEEEE----ec---C--CeEEEeCCCcCcH
Confidence 3789999999999999999986211 11223332 23454443221 11 1 2789999999774
No 134
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.07 E-value=0.0043 Score=57.91 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=35.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|+.++|||+|+|+|.+.. |... ...|.|+-.-...+. .++....+.++||+|..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~----~~~~---~~~t~~~~~~~~~~~--~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA----FSER---QGSTIGVDFTMKTLE--IQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC----C-------------CEEEEEEE--ETTEEEEEEEECCTTCG
T ss_pred EEEEECcCCCCHHHHHHHHhhCC----CCCC---CCCCcceEEEEEEEE--ECCEEEEEEEEECCCcH
Confidence 37899999999999999999753 4321 122333221111111 23456789999999964
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.00 E-value=0.0081 Score=55.24 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|+|.+.. |. ... ..|.|.-.. .. ...++..+.+-++||+|...
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~----~~--~~~-~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR----FI--SEY-DPNLEDTYS-SE--ETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS----CC--SCC-CTTCCEEEE-EE--EEETTEEEEEEEEECCC---
T ss_pred EEEECCCCCcHHHHHHHHHhCC----CC--ccc-CCCccceee-EE--EEECCEEEEEEEEECCCCCc
Confidence 7899999999999999999853 43 111 223332221 11 12245678889999999654
No 136
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.95 E-value=0.0065 Score=56.47 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=36.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|+|.+.. |... ...|.|.-... . ...++....+.++||+|...
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~~~-~--~~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ----FPEV---YVPTVFENYIA-D--IEVDGKQVELALWDTAGQED 85 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS----CCSS---CCCSSCCCCEE-E--EEETTEEEEEEEECCCCSGG
T ss_pred EEEECCCCCCHHHHHHHHHhCc----CCcc---cCCcccceEEE-E--EEECCEEEEEEEEECCCchh
Confidence 7899999999999999999853 3211 01121211110 0 11235567899999999654
No 137
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.90 E-value=0.011 Score=55.51 Aligned_cols=58 Identities=28% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|+.++|||+|+|+|.+.. |... ...|.|.-. ... ...++....+.+.||+|...
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDC----FPEN---YVPTVFENY-TAS--FEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC----CCSS---CCCCSEEEE-EEE--EESSSSEEEEEEEEECCSGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCCC---cCCccceeE-EEE--EEECCEEEEEEEEeCCCcHh
Confidence 7899999999999999999863 4311 122333322 111 12245678899999999644
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.90 E-value=0.0019 Score=69.45 Aligned_cols=59 Identities=22% Similarity=0.220 Sum_probs=31.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|.|++.. +...+...+.|..+.. .. .. -.+..+.++||+|+.+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~----~a~v~~~~gtT~d~~~--~~--i~--~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD----RAIVTDLPGTTRDVVE--SQ--LV--VGGIPVQVLDTAGIRE 284 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH----BSCCSCCTTCCHHHHH--HE--EE--ETTEEEEECC------
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC----cccccCCCCeeEEEEE--EE--EE--ECCEEEEEEECCcccc
Confidence 48999999999999999999853 3211111222322110 00 01 1346789999999854
No 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.88 E-value=0.009 Score=54.78 Aligned_cols=59 Identities=22% Similarity=0.152 Sum_probs=37.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- .. ..|.|.-. ... ...++....+.++||+|...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~----~~~--~~-~~t~~~~~-~~~--~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA----FPE--EY-VPTVFDHY-AVS--VTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS----CCC--SC-CCSSCCCE-EEE--EESSSCEEEEEEECCCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCC--CC-CCccccee-EEE--EEECCEEEEEEEEECCCCcc
Confidence 37899999999999999999753 321 11 12222211 111 12245668899999999754
No 140
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.86 E-value=0.0072 Score=63.05 Aligned_cols=64 Identities=22% Similarity=0.317 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecccc--c-cc-C---CCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNPVE--M-EI-D---GSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p~~--~-~~-~---g~~~~vlllDTEG~~~ 70 (542)
-|+|+|..++|||+|+|.|.+.. +.+++ |..+ +.|..-+..... + .. . .....+.++||+|+..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~----~~v~~~p~tTi~p-~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 78 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG----IEAANYPFCTIEP-NTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVA 78 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC----------CCCCCCC-CSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----CcccCCCCceECc-eEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcc
Confidence 58999999999999999999852 44432 3333 346544321100 0 00 0 0125789999999853
No 141
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.84 E-value=0.014 Score=54.43 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCC-ceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGS-RTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~-~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.-.. .+.+..... + ..++. ...+.++||+|...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~----~~~~~--~~~~~~~~~----~--~~~~~~~~~~~i~Dt~G~~~ 66 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ----YRDTQ--TSITDSSAI----Y--KVNNNRGNSLTLIDLPGHES 66 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CCCBC--CCCSCEEEE----E--ECSSTTCCEEEEEECCCCHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----ccccc--CCcceeeEE----E--EecCCCccEEEEEECCCChh
Confidence 58899999999999999999853 43111 122222221 1 11222 67899999999753
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=95.84 E-value=0.008 Score=64.94 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=36.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|+|+|..++|||+|+|+|.+.. +..-+.....|...-.- .+ .. .+..+.++||+|+.
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~----~a~vs~~~gTT~d~~~~--~i--~~--~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNED----RAIVTDIPGTTRDVISE--EI--VI--RGILFRIVDTAGVR 302 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT----BCCCCCSSCCSSCSCCE--EE--EE--TTEEEEEEESSCCC
T ss_pred EEEEECcCCCcHHHHHHHHHCCC----CCccCCCCCeeeeeEEE--EE--ec--CCeEEEEEECCCcc
Confidence 48999999999999999999863 32111112223221100 01 11 24678999999986
No 143
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.81 E-value=0.0072 Score=54.44 Aligned_cols=56 Identities=30% Similarity=0.403 Sum_probs=37.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|.|+|+.++|||+|+|++.+.. |.- . ..|.|.-. ...+ ..++..+.+.+.||+|..
T Consensus 10 i~~vG~~~vGKTsli~~l~~~~----~~~---~-~~t~~~~~-~~~~--~~~~~~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTGS----YQV---L-EKTESEQY-KKEM--LVDGQTHLVLIREEAGAP 65 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHSC----CCC---C-SSCSSSEE-EEEE--EETTEEEEEEEEECSSSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC----CCC---c-CCCcceeE-EEEE--EECCEEEEEEEEECCCCc
Confidence 7899999999999999999853 432 1 12333211 1111 124566788999999964
No 144
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.80 E-value=0.013 Score=53.48 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.++|+.++|||+|+|+|.+.. |.. ...|.|+-... +.. .+..+.+.||+|...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~----~~~----~~~t~g~~~~~--~~~----~~~~l~i~Dt~G~~~ 72 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED----ISH----ITPTQGFNIKS--VQS----QGFKLNVWDIGGQRK 72 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC----CEE----EEEETTEEEEE--EEE----TTEEEEEEECSSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCc----ccCcCCeEEEE--EEE----CCEEEEEEECCCCHH
Confidence 48899999999999999999752 321 12244533211 111 257788999999643
No 145
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.79 E-value=0.011 Score=54.49 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=35.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.-. ..+ |.|.-. ... ...++..+.+-++||+|...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~----~~~~--~~~-t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG----YPTE--YIP-TAFDNF-SAV--VSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--------------C-CSSEEE-EEE--EEETTEEEEEEEEECCCSTT
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----CCCC--CCC-ccccee-EEE--EEECCEEEEEEEEECCCCHH
Confidence 37899999999999999999753 4311 112 223221 111 11235567788999999754
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.75 E-value=0.012 Score=55.45 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=38.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|+|.+.. |.. ....|.|.-.- .. ...++..+.+.+.||+|...
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~----~~~---~~~~t~~~~~~-~~--~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC----YPE---TYVPTVFENYT-AC--LETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC----CCS---SCCCCSEEEEE-EE--EEC--CEEEEEEEEECCSGG
T ss_pred EEEECcCCCCHHHHHHHHhcCC----CCC---CcCCeeeeeEE-EE--EEECCEEEEEEEEECCCCHh
Confidence 7899999999999999999853 431 11234454431 11 12345678899999999654
No 147
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.73 E-value=0.0056 Score=56.87 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=35.0
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|..++|||+|+|++.|.. ..|. +.. .|.|.-.....+ ..+|..+.+.++||.|..+
T Consensus 9 v~lvG~~~vGKSsL~~~~~~~~--~~~~--~~~--~~~~~~~~~~~~--~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 9 VVLIGEQGVGKSTLANIFAGVH--DSMD--SDX--EVLGEDTYERTL--MVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS--CCC--------GGGCTTEEEEEE--EETTEEEEEEEECCCCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCc--CCcC--ccc--cccceeEEEEEE--EECCeEEEEEEEEeccCcc
Confidence 7899999999999999999742 1232 111 111211111111 1246677888999998654
No 148
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.68 E-value=0.012 Score=54.93 Aligned_cols=58 Identities=22% Similarity=0.138 Sum_probs=37.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||+|+|+|.+.. |.- .. ..|.|.-. ... ...++....+-++||+|...
T Consensus 12 i~i~G~~~~GKTsli~~l~~~~----~~~--~~-~~t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 12 CVTVGDGAVGKTCMLICYTSNK----FPT--DY-IPTVFDNF-SAN--VAVDGQIVNLGLWDTAGQED 69 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC----CCS--SC-CCSSCCCE-EEE--EECSSCEEEEEEECCCCCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CCc--cC-CCccceeE-EEE--EEECCEEEEEEEEECCCcHH
Confidence 7899999999999999999753 421 11 12323211 111 12245678899999999754
No 149
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.68 E-value=0.0051 Score=57.29 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=37.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|+|.+.. ..|.-.+ |.|.-.....+ ..++..+.+.+.||.|...
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~--~~~~~~~-----~~~~~~~~~~~--~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ--GDSAHEP-----ENPEDTYERRI--MVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE--CCGGGTT-----TSCTTEEEEEE--EETTEEEEEEEECCCCCSG
T ss_pred EEEEECCCCCCHHHHHHHHHhcc--CCccCCC-----CcccceEEEEE--EECCEEEEEEEEecCCCcc
Confidence 47999999999999999998642 1132111 11111111111 1245677889999999754
No 150
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.63 E-value=0.0081 Score=54.06 Aligned_cols=59 Identities=22% Similarity=0.177 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|++.+.. |.-. ...|.|.-. ... ...++....+-++||+|...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT----FPTD---YVPTVFDNF-SAN--VVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC----CC-------------C-BCC--CC-------CEEECCCC-CT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCC---CCCeeeeeE-EEE--EEECCEEEEEEEEECCCChh
Confidence 37899999999999999999753 4211 112223211 111 11235567788999999654
No 151
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.62 E-value=0.015 Score=61.67 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=32.5
Q ss_pred EEEECCCCCCHHHHHHHHHcCCC-CCCeeeeecC-cCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSC-DEGFGVGHMR-DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~-~~gF~vg~~~-~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|+|+|+.++|||+|+|.|+|... ..|.. +... .+.|.++-.-+..+ ..++....+-+.||.|++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~~~~~~-~~~~~~~~t~~~~~i~~v~--q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLYSPEYP-GPSHRIKKTVQVEQSKVLI--KEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCCCCCCC-SCC-----CCEEEEEECC--------CEEEEEEECC-----
T ss_pred EEEECCCCCcHHHHHHHHhCCCCCCCCCC-CcccCCccceeeeeEEEEE--ecCCcccceeeeechhhhhh
Confidence 68999999999999999999742 12210 0000 12233322111111 11233457889999999763
No 152
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.61 E-value=0.013 Score=62.11 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||||+|.|.|.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999995
No 153
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.59 E-value=0.016 Score=53.51 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=34.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.- . ..|.|.-.- .+ +..+..+.++||+|...
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~----~~~-~---~~t~~~~~~--~~----~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGE----IVT-T---IPTIGFNVE--TV----EYKNICFTVWDVGGQDK 85 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSC----CEE-E---EEETTEEEE--EE----EETTEEEEEEECC----
T ss_pred EEEEECCCCCCHHHHHHHHHhCC----ccc-c---CCcCceeEE--EE----EECCEEEEEEECCCCHh
Confidence 38899999999999999998753 431 1 124452211 11 12467899999999754
No 154
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.53 E-value=0.011 Score=55.51 Aligned_cols=59 Identities=19% Similarity=0.189 Sum_probs=31.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.-. ..+ |.|.-. ... ...++....+.++||+|...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~----~~~~--~~~-t~~~~~-~~~--~~~~~~~~~l~l~Dt~G~~~ 94 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA----FPES--YTP-TVFERY-MVN--LQVKGKPVHLHIWDTAGQDD 94 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-------------CC-CCCEEE-EEE--EEETTEEEEEEEEEC-----
T ss_pred EEEEECcCCCCHHHHHHHHHcCC----CCCC--CCC-ccceeE-EEE--EEECCEEEEEEEEECCCchh
Confidence 37899999999999999999753 4211 112 222111 111 12245667899999999654
No 155
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0079 Score=57.48 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=36.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|..++|||+|+|++.+.. ..|. +.. .|.|.-.....+ ..+|..+.+.++||.|..+
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~~--~~~~--~~~--~~~g~d~~~~~i--~~~~~~~~l~~~Dt~g~~~ 99 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGVH--DSMD--SDC--EVLGEDTYERTL--MVDGESATIILLDMWENKG 99 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC--CTTC--CC-----CCTTEEEEEE--EETTEEEEEEEECCTTTTH
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCCC--CcC--CccceeeEEEEE--EECCeeeEEEEeecCCCcc
Confidence 7899999999999999999742 1232 111 111211111111 1246677889999998543
No 156
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.50 E-value=0.015 Score=54.30 Aligned_cols=59 Identities=25% Similarity=0.229 Sum_probs=36.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|++.+.. |. +. ..+ |.|--.. . ....++..+.+.++||+|...
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~----~~-~~-~~~-t~~~~~~-~--~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA----FP-GE-YIP-TVFDNYS-A--NVMVDGKPVNLGLWDTAGLED 90 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC----CC-C--CCC-CSEEEEE-E--EEECC-CEEEEEEEEECCSGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCC----CC-CC-cCC-eecceeE-E--EEEECCEEEEEEEEECCCchh
Confidence 37899999999999999999753 32 11 112 2222111 1 112245677888999999754
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.49 E-value=0.0043 Score=57.59 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++|||||++.|.|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999863
No 158
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.49 E-value=0.013 Score=54.25 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=36.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec--CcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM--RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~--~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
=|.++|..++|||+|+|++.+. |...++ ....++ ...+. . .++....+-+.||+|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~-----~~~~~~~~~~~~~~-~~~~~----~-~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK-----MSPNETLFLESTNK-IYKDD----I-SNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC-----CCGGGGGGCCCCCS-CEEEE----E-CCTTSCCEEEEECCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc-----CCCcceeeeccccc-eeeee----c-cCCCeeEEEEEECCCCHH
Confidence 3789999999999999999884 332221 111111 11110 0 124668899999999654
No 159
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=95.47 E-value=0.0029 Score=58.67 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=36.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|+.++|||+|+|+|.+.. |.... ..|.|.-.....+ ..++....+.++||+|...
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~----~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT----YTESY---ISTIGVDFKIRTI--ELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC----CCCHH---HHHHCCSEEEEEE--EETTEEEEEEEECCTTCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcCC----CCCCc---CCcccceEEEEEE--EECCEEEEEEEEECCCcHh
Confidence 37899999999999999999753 43211 1122211111111 1134567899999999544
No 160
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.43 E-value=0.012 Score=62.68 Aligned_cols=62 Identities=23% Similarity=0.207 Sum_probs=34.3
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCcc-ceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKT-KGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~T-kGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|+.++|||||+|.|+|.. -.|-.+.+.....+ ++|-+- + ...+-...+-++|+.|++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~-l~g~~~~~~~~~~~~~~i~~v--~---Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK-FEGEPATHTQPGVQLQSNTYD--L---QESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC-C-------CCSSCEEEEEEEE--E---EC--CEEEEEEEEEECCCC
T ss_pred EEEECCCCCCHHHHHHHHhCcc-ccCCcCCCCCccceEeeEEEE--e---ecCccccccchhhhhhhhh
Confidence 8999999999999999999973 12222221111111 122111 1 1011223678899999976
No 161
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.41 E-value=0.007 Score=57.03 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+++... |.-.. ..|.|+=.-..... .++....+.++||+|...
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~----~~~~~---~~t~~~~~~~~~~~--~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE----FEKKY---VATLGVEVHPLVFH--TNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH----HTCEE---ETTTTEEEEEEEEE--ETTEEEEEEEEEECSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHcCC----CCCCC---CCccceeEEEEEEE--ECCEEEEEEEEeCCChHH
Confidence 37899999999999999965421 32111 11223222211111 235567899999999654
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.40 E-value=0.0069 Score=55.96 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||+|.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 7899999999999999999986
No 163
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.36 E-value=0.0098 Score=60.04 Aligned_cols=66 Identities=26% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC-C-CCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL-S-CDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~-~-~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+|+|+.++|||+|+|.|+|. . ..+|..+.+..-..|.++-. ..+....++....+-+.||.|+++
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~--~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEA--STVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEee--EEEEecCCCcccCcchhhhhhhhh
Confidence 689999999999999999985 1 11221110000011222100 001111134456788999999865
No 164
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.35 E-value=0.0049 Score=58.05 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|.|.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 165
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.34 E-value=0.019 Score=57.93 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=38.1
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|..++|||+|+|++++.. ..|. +. ....|.|+-.....+ + .+..+.++||+|...
T Consensus 6 I~lvG~~~vGKSSLi~~l~~~~--~~~~-~~-~~~~Ti~~~~~~~~~----~-~~~~l~i~Dt~G~~~ 64 (307)
T 3r7w_A 6 LLLMGRSGSGKSSMRSIIFSNY--SAFD-TR-RLGATIDVEHSHLRF----L-GNMTLNLWDCGGQDV 64 (307)
T ss_dssp EEEECCTTSSHHHHHHHHHSCC--CTGG-GG-GCCCCCSEEEEEEEE----T-TTEEEEEEEECCSHH
T ss_pred EEEECCCCCCHHHHHHHHHhCC--CCcc-cc-CcCCccceEEEEEEe----C-CceEEEEEECCCcHH
Confidence 7899999999999999999852 1232 11 122344443322111 1 267899999999654
No 166
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.25 E-value=0.0072 Score=62.03 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|+.++|||+|+|.|.+.
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 167
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.22 E-value=0.009 Score=59.52 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|+.++|||||+|.|+|.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 168
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.14 E-value=0.026 Score=59.41 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=39.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCe-eeee---cCcCccceEEeeecc-cc--cc-cCCC---ceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGF-GVGH---MRDTKTKGIWVWGNP-VE--ME-IDGS---RTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF-~vg~---~~~~~TkGIWmW~~p-~~--~~-~~g~---~~~vlllDTEG~~~ 70 (542)
.|+++|+.++|||||+|.|.|.. + .+++ +.-..+.|...+..+ +. .. ..+. ...+.++||+|+..
T Consensus 22 ~vgiVG~pnaGKSTL~n~Ltg~~----~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAITKSV----LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp EEEEEECSSSSHHHHHHHHHHST----TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 68999999999999999999953 2 2221 122335666544311 10 00 0111 13578999999753
No 169
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=95.12 E-value=0.017 Score=62.70 Aligned_cols=61 Identities=26% Similarity=0.375 Sum_probs=36.2
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeec------ccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGN------PVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~------p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|..++|||+|+|+|.+.. |. .....|.|+-.-.. .+....++....+.+.||+|...
T Consensus 44 V~lvG~~~vGKSSLl~~l~~~~----~~---~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 44 VHLIGDGMAGKTSLLKQLIGET----FD---PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp EEEESSSCSSHHHHHHHHHC------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT
T ss_pred EEEECCCCCCHHHHHHHHhcCC----CC---CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH
Confidence 7899999999999999999853 43 11233445444322 11112234578999999999543
No 170
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.10 E-value=0.012 Score=60.61 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|+|.|.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
No 171
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.92 E-value=0.023 Score=59.84 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=33.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee----cCcCccceEEeeecc-cc-----cc-cCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH----MRDTKTKGIWVWGNP-VE-----ME-IDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~----~~~~~TkGIWmW~~p-~~-----~~-~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|+.++|||+|+|.|.|.. +.+++ |..+. .|..-+... +. .. .......+.++||+|+..
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~----~~~~~~p~tTi~p~-~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQ----ASAENFPFCTIDPN-ESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-----------------CCS-EEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCC----ccccCCCccccCce-eEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 37999999999999999999863 33332 33333 344433211 00 00 000134589999999853
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=94.70 E-value=0.019 Score=59.15 Aligned_cols=55 Identities=20% Similarity=0.160 Sum_probs=36.4
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|+++|..++|||+|+|+|.+.. +.+.. ++...+.|+.-+ .....+.+.||+|+..
T Consensus 161 V~lvG~~nvGKSTLln~L~~~~----~~i~~~~ftTl~p~~g~v~~---------~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 161 VGLVGFPSVGKSTLLSVVSSAK----PKIADYHFTTLVPNLGMVET---------DDGRSFVMADLPGLIE 218 (342)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC----CEESSTTSSCCCCCEEEEEC---------SSSCEEEEEEHHHHHH
T ss_pred eeeeCCCCCCHHHHHHHHHcCC----CccccCCccccCceEEEEEe---------CCCceEEEecCCCCcc
Confidence 8999999999999999999753 33322 112223343221 1235789999999753
No 173
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.66 E-value=0.015 Score=54.85 Aligned_cols=22 Identities=36% Similarity=0.365 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.|.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=94.55 E-value=0.045 Score=59.71 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=35.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec---------------CcCccceEEeeecccccccCCCceeEEEeecC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM---------------RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTE 66 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~---------------~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTE 66 (542)
-|+|+|..++|||+|+|+|++.. ..+.-.+. ....+.|+=+-...... +..+..+.++||+
T Consensus 15 ~I~IiG~~~aGKTTL~~~Ll~~~--g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~--~~~~~~i~liDTP 90 (529)
T 2h5e_A 15 TFAIISHPDAGKTTITEKVLLFG--QAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF--PYHDCLVNLLDTP 90 (529)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC--C-------------------------------CCTTEEEE--EETTEEEEEECCC
T ss_pred EEEEECCCCChHHHHHHHHHhhc--CCccccceeecCccccceeeccchhcccCCcceeeeEEEE--EECCeEEEEEECC
Confidence 48999999999999999999742 11110000 01124444332221111 2346789999999
Q ss_pred Cccc
Q 009154 67 GFES 70 (542)
Q Consensus 67 G~~~ 70 (542)
|..+
T Consensus 91 G~~d 94 (529)
T 2h5e_A 91 GHED 94 (529)
T ss_dssp CSTT
T ss_pred CChh
Confidence 9755
No 175
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.54 E-value=0.017 Score=55.20 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||+|+|.|++.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 6899999999999999999986
No 176
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.53 E-value=0.018 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||||++.|.|.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 7999999999999999999986
No 177
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.51 E-value=0.02 Score=60.04 Aligned_cols=22 Identities=27% Similarity=0.381 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|.+.
T Consensus 13 ~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 13 NVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhh
Confidence 4899999999999999999973
No 178
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.51 E-value=0.024 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+|+||.++|||+|++.|++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 78999999999999999999863
No 179
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.50 E-value=0.027 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.172 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++|+.++|||+|||.|.|..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 68999999999999999999864
No 180
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.50 E-value=0.033 Score=53.35 Aligned_cols=59 Identities=22% Similarity=0.306 Sum_probs=36.7
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
|.|+|..++|||.|+|++.... |.-. ...|-|+-.....+. .++..+.+-+.||.|...
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~----f~~~---~~~Tig~d~~~k~~~--~~~~~v~l~iwDtaGqe~ 74 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS----FDNT---YQATIGIDFLSKTMY--LEDRTIRLQLWDTAGLER 74 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC----CC-------------CEEEEEE--CSSCEEEEEEECCSCTTT
T ss_pred EEEECcCCcCHHHHHHHHHhCC----CCCC---cCCccceEEEEEEEE--ecceEEEEEEEECCCchh
Confidence 7899999999999999998643 6422 133555443333322 246678899999999643
No 181
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.46 E-value=0.02 Score=53.29 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.++|+||.++|||||++.|.|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999986
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.40 E-value=0.019 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++|||||+|.|.|..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 78999999999999999999974
No 183
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.38 E-value=0.019 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999963
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=94.34 E-value=0.078 Score=59.68 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
.|+|+|..++|||+|+|+|++
T Consensus 12 ~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 12 NIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp EEEEECCGGGTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999995
No 185
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=94.30 E-value=0.1 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.526 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|..++|||+|+|+|.+.
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999985
No 186
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.26 E-value=0.049 Score=54.10 Aligned_cols=59 Identities=25% Similarity=0.191 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|++.+.. |. ....+ |.|.-. ...+ ..++..+.+.++||+|...
T Consensus 157 ~i~i~G~~~~GKssli~~~~~~~----~~--~~~~~-t~~~~~-~~~~--~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 157 KCVVVGDGAVGKTCLLISYTTNA----FP--GEYIP-TVFDNY-SANV--MVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC----CC--CSCCC-CSEEEE-EEEE--EETTEEEEEEEEEECCCGG
T ss_pred EEEEECCCCCChHHHHHHHHhCC----CC--cccCC-ccccee-EEEE--EECCEEEEEEEEeCCCchh
Confidence 37899999999999999999753 32 11122 223221 1111 2245667788999999754
No 187
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.28 E-value=0.0081 Score=55.77 Aligned_cols=59 Identities=24% Similarity=0.160 Sum_probs=36.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|.|+|..++|||+|+|+|.+.. |.-. ...|.|--. ... ...++..+.+-++||+|...
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~----~~~~---~~~t~~~~~-~~~--~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNA----FPGE---YIPTVFDNY-SAN--VMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 37899999999999999998642 3211 111222111 111 12235567778999999654
No 188
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.17 E-value=0.021 Score=55.02 Aligned_cols=23 Identities=43% Similarity=0.479 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 189
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.13 E-value=0.022 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999985
No 190
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=93.99 E-value=0.1 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|++.
T Consensus 19 ~i~iiG~~d~GKSTL~~~Ll~~ 40 (439)
T 3j2k_7 19 NVVFIGHVDAGKSTIGGQIMYL 40 (439)
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 191
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.97 E-value=0.028 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 192
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=93.97 E-value=0.055 Score=55.10 Aligned_cols=54 Identities=22% Similarity=0.165 Sum_probs=35.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
-|.|+|..++|||+|+|+|.+.. |.-. . .|.|+-... .+..+..+.++||+|..
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~----~~~~---~-pT~~~~~~~------~~~~~~~l~i~Dt~G~~ 220 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGE----IVTT---I-PTIGFNVET------VEYKNISFTVWDVGGQD 220 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSC----CEEE---E-EETTEEEEE------EEETTEEEEEEECC---
T ss_pred eEEEECCCCccHHHHHHHHhCCC----CCCc---c-cccceEEEE------EecCcEEEEEEECCCCH
Confidence 48999999999999999998753 4311 1 255544322 12356789999999943
No 193
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.96 E-value=0.025 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++|||||++.|+|..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 78999999999999999999963
No 194
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.95 E-value=0.026 Score=55.57 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 195
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=93.95 E-value=0.064 Score=57.37 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=37.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeeecCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHMRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|..++|||+|+|+|.+.. |.. . ..|.|+=.-. .+..++.+.++||+|...
T Consensus 324 ki~lvG~~nvGKSsLl~~l~~~~----~~~---~-~~T~~~~~~~------~~~~~~~~~l~Dt~G~~~ 378 (497)
T 3lvq_E 324 RILMLGLDAAGKTTILYKLKLGQ----SVT---T-IPTVGFNVET------VTYKNVKFNVWDVGGQDK 378 (497)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----CCC---C-CCCSSEEEEE------EESSSCEEEEEEECCCGG
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC----CCC---c-CCccceeEEE------EEeCCEEEEEEECCCcHH
Confidence 37899999999999999999863 321 1 1144433211 123567899999999654
No 196
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.93 E-value=0.016 Score=59.04 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++|+.++|||+|+|.|.|..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999999863
No 197
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=93.93 E-value=0.062 Score=57.68 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+|+|++.
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999875
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.90 E-value=0.043 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|+.++|||+|+|.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 199
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.89 E-value=0.028 Score=54.36 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|+|.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 200
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=93.87 E-value=0.098 Score=57.05 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|..++|||+|+|+|++.
T Consensus 15 ~IaIiG~~~aGKTTL~~~Ll~~ 36 (528)
T 3tr5_A 15 TFAIISHPDAGKTTLTEKLLLF 36 (528)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHhh
Confidence 5899999999999999999843
No 201
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.87 E-value=0.029 Score=55.75 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++|||||++.|.|..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999963
No 202
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.83 E-value=0.029 Score=54.65 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|+|.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 203
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.80 E-value=0.029 Score=55.46 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 204
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.80 E-value=0.026 Score=53.96 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|.|.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 205
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.77 E-value=0.021 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHH-cC
Q 009154 2 HIQVIGPYRSGKSFLLNQLL-SL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll-g~ 23 (542)
+|+|+||.++|||||++.|. |.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 78999999999999999999 86
No 206
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.76 E-value=0.031 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 207
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.75 E-value=0.026 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999963
No 208
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.74 E-value=0.03 Score=55.94 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++|||||++.|.|..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999999963
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.73 E-value=0.026 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|.|.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999996
No 210
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.73 E-value=0.031 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 211
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=93.67 E-value=0.15 Score=57.45 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=46.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC---CC-----CCeeeeecC-cCccceEEeeecccccccCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS---CD-----EGFGVGHMR-DTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~---~~-----~gF~vg~~~-~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~e 72 (542)
.|+|+|..++|||+|+|+|+... .. .|-.+.... .....|+=+-....... ..+..+.++||+|..+..
T Consensus 14 ~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~--~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF--WKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE--ETTEEEEEECCCSSTTCH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE--ECCeEEEEEECcCccchH
Confidence 48999999999999999999421 00 011110000 00022332222221111 236789999999975421
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhH
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRL 108 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L 108 (542)
....-++...=.-++|+........+....+
T Consensus 92 -----~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~ 122 (691)
T 1dar_A 92 -----IEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122 (691)
T ss_dssp -----HHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred -----HHHHHHHHHCCEEEEEEECCCCcchhhHHHH
Confidence 1222233332233455665555554444433
No 212
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.65 E-value=0.033 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 213
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.63 E-value=0.034 Score=50.88 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+++++|+.++|||||++.+++
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 689999999999999998664
No 214
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.62 E-value=0.035 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|.|.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 215
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.60 E-value=0.033 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 216
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=93.54 E-value=0.074 Score=56.34 Aligned_cols=56 Identities=16% Similarity=0.161 Sum_probs=36.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee---cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH---MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~---~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
.|+++|+.++|||+|||.|.+.. ..+.. +....+.|.-.+ + ....+.+.||+|+..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~~ftTl~p~~G~V~~--------~-~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAH----PKIAPYPFTTLSPNLGVVEV--------S-EEERFTLADIPGIIE 217 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSC----CEECCCTTCSSCCEEEEEEC--------S-SSCEEEEEECCCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC----ccccCcccceecceeeEEEe--------c-CcceEEEEecccccc
Confidence 48999999999999999999863 22322 111223343221 1 135688999999853
No 217
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.53 E-value=0.035 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.51 E-value=0.038 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||||++.|.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999985
No 219
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.51 E-value=0.036 Score=55.05 Aligned_cols=23 Identities=48% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 68999999999999999999963
No 220
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.48 E-value=0.064 Score=48.30 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
++.++|+.++|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999853
No 221
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.48 E-value=0.039 Score=54.75 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|.|.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.43 E-value=0.037 Score=54.74 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.+|||||||+.|+|.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999999985
No 223
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.42 E-value=0.037 Score=54.50 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999973
No 224
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.41 E-value=0.12 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++|+.++|||+|+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 68999999999999999999 63
No 225
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.34 E-value=0.039 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.|.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhh
Confidence 7999999999999999999986
No 226
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.33 E-value=0.039 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 227
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.33 E-value=0.039 Score=54.67 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++||||||+.|.|..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999963
No 228
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.28 E-value=0.04 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|.|.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999996
No 229
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.064 Score=59.53 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+|+|++.
T Consensus 169 kV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 169 SFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp EEEEECCSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHh
Confidence 4889999999999999999975
No 230
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.23 E-value=0.041 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.|.
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999985
No 231
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.23 E-value=0.041 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999963
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.22 E-value=0.048 Score=50.43 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|+.+||||||++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999986
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.17 E-value=0.039 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|.|+|+.++|||+|.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 234
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=93.02 E-value=0.05 Score=56.82 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=37.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC---ee---eee-cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEG---FG---VGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~g---F~---vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+++|...+|||+|+|+|.+.....| |. ... .....+.|+=+-...... +..+..+.++||+|..+
T Consensus 5 ~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~--~~~~~~~~iiDtpG~~~ 78 (397)
T 1d2e_A 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEY--STAARHYAHTDCPGHAD 78 (397)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEE--ECSSCEEEEEECSSHHH
T ss_pred EEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEe--ccCCeEEEEEECCChHH
Confidence 489999999999999999997411111 21 111 001113343221111111 23457788999999754
No 235
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=92.96 E-value=0.13 Score=56.95 Aligned_cols=104 Identities=17% Similarity=0.281 Sum_probs=50.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCee--eeecC-cCccceEEeeecccccc---cCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEGFG--VGHMR-DTKTKGIWVWGNPVEME---IDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~gF~--vg~~~-~~~TkGIWmW~~p~~~~---~~g~~~~vlllDTEG~~~~e 72 (542)
-|+|+|...+|||+|+|+|+.... ..++. +..+. .-.++||=+-....... .+|.+..+-++||+|..+..
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~ 85 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFS 85 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHH
Confidence 379999999999999999997420 01110 11110 01134554432222221 14567889999999975521
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHH
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~ 110 (542)
....-++...=.-++|+.....+..+....+..
T Consensus 86 -----~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~ 118 (599)
T 3cb4_D 86 -----YEVSRSLAACEGALLVVDAGQGVEAQTLANCYT 118 (599)
T ss_dssp -----HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHH
T ss_pred -----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
Confidence 122334455444567787776666666655543
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.92 E-value=0.034 Score=51.77 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=24.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG 32 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg 32 (542)
+++|+|+.++|||+|+|.|++.....|+.++
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~ 38 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPG 38 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCcee
Confidence 7899999999999999999975323455554
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.76 E-value=0.051 Score=48.94 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||||++.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.70 E-value=0.058 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.286 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++||.++|||||++.|.|.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999986
No 239
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=92.69 E-value=0.16 Score=56.34 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=51.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCCee--eeecC-cCccceEEeeeccccc--c-cCCCceeEEEeecCCccccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEGFG--VGHMR-DTKTKGIWVWGNPVEM--E-IDGSRTSVFYLDTEGFESIG 72 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~gF~--vg~~~-~~~TkGIWmW~~p~~~--~-~~g~~~~vlllDTEG~~~~e 72 (542)
-|+|+|...+|||+|+|+|++... ..++. +..+. ...++||=+-...... . .++....+-++||+|..+..
T Consensus 8 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF~ 87 (600)
T 2ywe_A 8 NFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDFS 87 (600)
T ss_dssp EEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGGH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhHH
Confidence 479999999999999999986310 11111 01110 0113444433222221 1 14566889999999986521
Q ss_pred CcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHH
Q 009154 73 KSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 73 ~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~ 110 (542)
....-+++..=.-++|+.....++.+....+..
T Consensus 88 -----~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~ 120 (600)
T 2ywe_A 88 -----YEVSRALAACEGALLLIDASQGIEAQTVANFWK 120 (600)
T ss_dssp -----HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHH
T ss_pred -----HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH
Confidence 122223444334456777766666655555433
No 240
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=92.59 E-value=0.2 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|++.
T Consensus 26 ~i~iiG~~~~GKSTLi~~Ll~~ 47 (434)
T 1zun_B 26 RFLTCGNVDDGKSTLIGRLLHD 47 (434)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHhh
Confidence 4789999999999999999975
No 241
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=92.56 E-value=0.21 Score=51.84 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
.|+++|...+|||+|+|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~ 42 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG 42 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 242
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.55 E-value=0.056 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.712 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||+|++.|+|.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999986
No 243
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.51 E-value=0.06 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|.|.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.48 E-value=0.057 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||+|++.|+|.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 245
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=92.44 E-value=0.14 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+++|...+|||+|+|+|.+.
T Consensus 21 ~I~iiG~~d~GKSTLi~~L~~~ 42 (482)
T 1wb1_A 21 NLGIFGHIDHGKTTLSKVLTEI 42 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHCC
Confidence 5899999999999999999985
No 246
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.42 E-value=0.099 Score=56.76 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|+|+|++++||||+.|.|+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999993
No 247
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.36 E-value=0.077 Score=47.04 Aligned_cols=20 Identities=35% Similarity=0.266 Sum_probs=19.2
Q ss_pred CEEEEECCCCCCHHHHHHHH
Q 009154 1 MHIQVIGPYRSGKSFLLNQL 20 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~L 20 (542)
++|.|+|+.+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999999
No 248
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.28 E-value=0.022 Score=60.59 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|++++||||+.+.|.+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999974
No 249
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.27 E-value=0.074 Score=50.09 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|+|+.+|||||+++.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999874
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.22 E-value=0.072 Score=55.39 Aligned_cols=23 Identities=43% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++|+.++|||+|+|.|+|..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 68999999999999999999964
No 251
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.19 E-value=0.062 Score=54.08 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++||||||+.|.|.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 252
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.18 E-value=0.079 Score=49.41 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.+.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999875
No 253
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.17 E-value=0.045 Score=55.61 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||||++.|+|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999999996
No 254
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.09 E-value=0.066 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.|.
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999985
No 255
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.07 E-value=0.076 Score=50.46 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+++|+||.++|||+|++.|++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999994
No 256
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.05 E-value=0.023 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999986
No 257
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.00 E-value=0.073 Score=55.15 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+|||||||+.|+|.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999985
No 258
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.99 E-value=0.079 Score=48.61 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.++|+.++|||||++.|.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999874
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.98 E-value=0.065 Score=50.50 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=25.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC--eeeeecCc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEG--FGVGHMRD 36 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~g--F~vg~~~~ 36 (542)
.|.|+||.++||++|++.|+... ... |++.+|+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~-~~~~~~svs~TTR 38 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY-PDSFGFSVSSTTR 38 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC-TTTEEECCCEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC-CCCeEEEEEEecc
Confidence 57899999999999999998652 233 45566543
No 260
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.96 E-value=0.089 Score=50.72 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+|+|+|+.+||||||++.|.
T Consensus 29 ~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999999999
No 261
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.92 E-value=0.054 Score=50.40 Aligned_cols=33 Identities=33% Similarity=0.506 Sum_probs=25.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH 33 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~ 33 (542)
.+|+|+|+.+||||+|++.|++.....|+.|+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ 37 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 37 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeE
Confidence 379999999999999999999753334665543
No 262
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=91.88 E-value=0.15 Score=56.31 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=51.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeee-ecCcCccceEEeeeccccc----------ccCCCceeEEEeecCCcc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG-HMRDTKTKGIWVWGNPVEM----------EIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg-~~~~~~TkGIWmW~~p~~~----------~~~g~~~~vlllDTEG~~ 69 (542)
.+|+|+|...+|||+|+|+|++.. +.-. ++.-..|-|...-...... +.+.....+.++||+|..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~----v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA----VASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH----HSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred cEEEEECCCCCcHHHHHHHHhccc----CccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 379999999999999999999752 2110 0000122333221111000 000112258899999976
Q ss_pred cccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhhHHH
Q 009154 70 SIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSF 110 (542)
Q Consensus 70 ~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~L~~ 110 (542)
+....... ++...=.-++||.....+..+..+.+..
T Consensus 82 ~F~~~~~r-----~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 82 AFTTLRKR-----GGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp CCTTSBCS-----SSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHHHHHH-----HHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 53222110 0001012246777776666666666654
No 263
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.86 E-value=0.095 Score=51.09 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHH
Q 009154 1 MHIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Ll 21 (542)
.+|+|+|+.+|||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 379999999999999999999
No 264
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.77 E-value=0.085 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 265
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.77 E-value=0.074 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||||++.|.|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999986
No 266
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.76 E-value=0.086 Score=54.95 Aligned_cols=23 Identities=35% Similarity=0.349 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 68999999999999999999973
No 267
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=91.67 E-value=0.038 Score=60.49 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|...+|||+|+|+|.+.
T Consensus 6 kV~IvG~~~vGKTSLl~~L~~~ 27 (537)
T 3izy_P 6 VVTIMGHVDHGKTTLLDKLRKT 27 (537)
T ss_dssp BCEEEESTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999975
No 268
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=91.64 E-value=1.1 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+++|...+|||+|+|+|.|.
T Consensus 12 ~I~iiG~~~~GKSTLi~~L~g~ 33 (410)
T 1kk1_A 12 NIGMVGHVDHGKTTLTKALTGV 33 (410)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
No 269
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.60 E-value=0.09 Score=48.79 Aligned_cols=29 Identities=28% Similarity=0.246 Sum_probs=24.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH 33 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~ 33 (542)
++|+|+|+.+|||||+++.|.+. |+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~----g~~~i~ 30 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL----GAYVLD 30 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT----TCEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHC----CCEEEE
Confidence 47999999999999999999983 555543
No 270
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.55 E-value=0.092 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 68999999999999999999973
No 271
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.54 E-value=0.085 Score=54.83 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999973
No 272
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.52 E-value=0.095 Score=54.93 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++||.++||||||+.|.|..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 68999999999999999999973
No 273
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.52 E-value=0.26 Score=52.56 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=23.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
||.++|++++||||+++.|+......|..|
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kV 131 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKV 131 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeE
Confidence 799999999999999999986433345554
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.51 E-value=0.067 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||||++.|.|.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999986
No 275
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.49 E-value=0.096 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 68999999999999999999973
No 276
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.47 E-value=0.095 Score=54.67 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 68999999999999999999973
No 277
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=91.47 E-value=0.66 Score=52.26 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|..++|||+|+++|+..
T Consensus 12 ~I~IiG~~~~GKTTL~~~Ll~~ 33 (704)
T 2rdo_7 12 NIGISAHIDAGKTTTTERILFY 33 (704)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999853
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.38 E-value=0.023 Score=53.00 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=24.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVG 32 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg 32 (542)
++|+|+|+.+|||||+++.|.......|+.+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 58999999999999999999865222345544
No 279
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.35 E-value=0.1 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68999999999999999999973
No 280
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.35 E-value=0.074 Score=54.37 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||||.|+|.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999996
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.34 E-value=0.094 Score=55.57 Aligned_cols=22 Identities=45% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+|||||||+.|+|.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 282
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.33 E-value=0.1 Score=48.63 Aligned_cols=22 Identities=41% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||||++.|.+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999985
No 283
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=91.32 E-value=0.074 Score=57.69 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|...+|||+|+|+|.+.
T Consensus 6 ~V~IvGhvd~GKTTLl~~L~~~ 27 (501)
T 1zo1_I 6 VVTIMGHVDHGKTSLLEYIRST 27 (501)
T ss_dssp CEEEEESTTSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 284
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.29 E-value=0.078 Score=54.81 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||+|.|+|.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999996
No 285
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.28 E-value=0.26 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|+.++|||+|+|+|++.
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 5899999999999999999964
No 286
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.24 E-value=0.11 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+++.|.+.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 6899999999999999999874
No 287
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.20 E-value=0.1 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+|+|+.+||||||++.|.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999875
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.17 E-value=0.1 Score=48.47 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|+|+|+.+|||||+.+.|.+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999987
No 289
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.05 E-value=0.1 Score=48.75 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.+.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999874
No 290
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.04 E-value=0.13 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+|||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 291
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.94 E-value=0.11 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++|+.++|||||++.|.|.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999986
No 292
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=90.93 E-value=0.077 Score=56.12 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|++.
T Consensus 8 ~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 8 NLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 293
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.91 E-value=0.11 Score=54.09 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.+|||||||+.|+|.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 294
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.71 E-value=0.086 Score=48.29 Aligned_cols=23 Identities=35% Similarity=0.307 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|++.|+.+|||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 295
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=90.71 E-value=0.28 Score=56.43 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC---CCC---eee----------eecCcCccceEEeeecc------cccccCCCcee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC---DEG---FGV----------GHMRDTKTKGIWVWGNP------VEMEIDGSRTS 59 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~---~~g---F~v----------g~~~~~~TkGIWmW~~p------~~~~~~g~~~~ 59 (542)
-|+|+|...+|||+|+|+|++... ..+ -.+ |.|+.+... -..|... +....++.+..
T Consensus 21 nI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 21 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAI-SLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEE-EEEEECCHHHHHHCSSCCCSSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeecee-EEEecccccccccccccccCCCce
Confidence 489999999999999999997410 000 000 111111111 1122210 00012355788
Q ss_pred EEEeecCCcccccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhhh
Q 009154 60 VFYLDTEGFESIGKSNVYDDRIFALATVMSSVLIYNLPETIREADISR 107 (542)
Q Consensus 60 vlllDTEG~~~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~~ 107 (542)
+-|+||+|..+.. ....-++...=.-++||.....+..+....
T Consensus 100 i~liDTPG~~df~-----~~~~~~l~~aD~ailVvDa~~g~~~qt~~~ 142 (842)
T 1n0u_A 100 INLIDSPGHVDFS-----SEVTAALRVTDGALVVVDTIEGVCVQTETV 142 (842)
T ss_dssp EEEECCCCCCSSC-----HHHHHHHHTCSEEEEEEETTTBSCHHHHHH
T ss_pred EEEEECcCchhhH-----HHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence 9999999976532 123334444334457777776665555443
No 296
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.63 E-value=0.087 Score=54.47 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 68999999999999999999973
No 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.59 E-value=0.12 Score=47.13 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+.+.||.+||||+|++.+.+.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 298
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.54 E-value=0.13 Score=47.92 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+|||||+++.|.+.
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7899999999999999999985
No 299
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=90.50 E-value=0.075 Score=56.76 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|++.
T Consensus 9 ~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 9 NVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999864
No 300
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.39 E-value=0.097 Score=58.00 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
.|+|+|+.++|||+|||.|.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999973
No 301
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.35 E-value=0.12 Score=49.39 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|.|+-++|||||++.|.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999884
No 302
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.32 E-value=0.21 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||||||.|+|.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999986
No 303
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.31 E-value=0.14 Score=51.45 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.+||||||++.|.+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 304
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=90.30 E-value=0.14 Score=49.86 Aligned_cols=20 Identities=40% Similarity=0.549 Sum_probs=19.2
Q ss_pred EEEECCC---------CCCHHHHHHHHHc
Q 009154 3 IQVIGPY---------RSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~---------rtGKSfLLN~Llg 22 (542)
|+|+|.. ++|||+|+|+|.+
T Consensus 22 i~lvG~~~~~~~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 22 ISVVGLSGTEKEKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp EEEEESCCCTTTTTTCCCSHHHHHHHHHC
T ss_pred EEEECCCccccccCCCCcCHHHHHHHHHh
Confidence 7899999 9999999999998
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.28 E-value=0.16 Score=46.57 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|+|+.+|||||+.+.|...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHh
Confidence 57999999999999999999875
No 306
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.20 E-value=0.13 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|+|.
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6899999999999999999996
No 307
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.18 E-value=0.14 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|+.++|||||++.|.|.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 308
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=90.13 E-value=0.089 Score=58.16 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
-|+|+|...+|||+|+|+|++
T Consensus 179 ~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 179 HLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp EEEEECCSSSTHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 309
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.13 E-value=0.14 Score=56.03 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++||.++||||||+.|.|..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 78999999999999999999963
No 310
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.10 E-value=0.082 Score=54.75 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999973
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.96 E-value=0.14 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+|||||+.+.|.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999874
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.61 E-value=0.12 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+|||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999864
No 313
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.57 E-value=0.17 Score=55.18 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++++|+.++||||||+.|.|..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 314
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.47 E-value=0.18 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+++|+.++|||||++.|.|.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 7999999999999999999986
No 315
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.46 E-value=0.17 Score=47.19 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|..++|||+|+|+|++.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999975
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.40 E-value=0.14 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.++|+|+.++|||||++.|.|.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999996
No 317
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.36 E-value=0.18 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|.|..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 78999999999999999999974
No 318
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.33 E-value=0.19 Score=46.83 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|++.|++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999964
No 319
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.09 E-value=0.15 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
|+.|+|+-++|||||||.|+|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 78999999999999999999863
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.02 E-value=0.24 Score=44.79 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+|||||+.+.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 321
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=89.00 E-value=0.6 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+|+|...+|||+|+|+|.|.
T Consensus 10 ~I~iiG~~d~GKSTLi~~L~g~ 31 (408)
T 1s0u_A 10 NIGMVGHVDHGKTSLTKALTGV 31 (408)
T ss_dssp EEEEESCTTSSHHHHHHHHHSC
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 4899999999999999999975
No 322
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.75 E-value=0.19 Score=46.20 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|+|+.+||||++.+.|...
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999873
No 323
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.70 E-value=0.21 Score=46.97 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHc
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg 22 (542)
++|+|.|+.+|||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999986
No 324
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.63 E-value=0.2 Score=55.48 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++||||||+.|.|..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999999963
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.63 E-value=0.22 Score=44.58 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|.|+|+.+|||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
No 326
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.52 E-value=0.27 Score=44.60 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|++.|+.+|||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 327
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.41 E-value=0.22 Score=53.96 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||+|+|+.|+|||||++.|.|.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHH
Confidence 7999999999999999999986
No 328
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.37 E-value=0.17 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+|+|+.++|||||++.|+|..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999973
No 329
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.36 E-value=0.23 Score=54.56 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 330
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.30 E-value=0.23 Score=53.66 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++||||||+.|.|.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 7899999999999999999985
No 331
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.06 E-value=0.24 Score=54.15 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++|||||++.|.|..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 332
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.05 E-value=0.25 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++||||||+.|+|..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 333
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=88.02 E-value=0.22 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|.|.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999999996
No 334
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=87.95 E-value=0.25 Score=54.70 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+||.++||||||+.|+|..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999963
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.87 E-value=0.33 Score=43.22 Aligned_cols=23 Identities=39% Similarity=0.316 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.|.|.|+.+||||++.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999763
No 336
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.71 E-value=0.17 Score=53.79 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|++++||||+...|+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999843
No 337
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=87.70 E-value=0.21 Score=54.90 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|.|.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 338
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.68 E-value=0.22 Score=54.83 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|+|.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999996
No 339
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=87.39 E-value=0.21 Score=54.81 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|+|.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999996
No 340
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.31 E-value=0.36 Score=43.41 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|-++|+.+|||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37899999999999999999875
No 341
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.29 E-value=0.3 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+++|+|+.++||||||+.|.|..
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 68999999999999999999974
No 342
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=87.28 E-value=0.29 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+..|+|+.++|||+|+..|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999764
No 343
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.25 E-value=0.29 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+|.|+.++||||+++.|....
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999763
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.22 E-value=0.35 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.|.|.|+.+|||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999653
No 345
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=87.18 E-value=0.23 Score=58.98 Aligned_cols=67 Identities=21% Similarity=0.293 Sum_probs=32.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCC------CCeeeee-cCcCccceEEeeecccccccCCCceeEEEeecCCccc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCD------EGFGVGH-MRDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFES 70 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~------~gF~vg~-~~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~ 70 (542)
-|+|+|...+|||+|+|+|.+.... .+|.+.. .....+.||=+-...... +..+..+.++||+|..+
T Consensus 298 nIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f--~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 298 NVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEY--DTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEE--ECSSCEEEEEECCCHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEE--cCCCEEEEEEECCChHH
Confidence 4899999999999999999974100 1122111 111234555332211111 23456778888888543
No 346
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=87.18 E-value=0.35 Score=44.90 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+...|.+.
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 347
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.12 E-value=0.31 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||+|.+.|.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 7899999999999999999864
No 348
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.07 E-value=0.28 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.129 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|++.|++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 349
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=87.01 E-value=0.3 Score=45.71 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|..++|||+|+|+|++.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999975
No 350
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.00 E-value=0.33 Score=45.03 Aligned_cols=21 Identities=48% Similarity=0.482 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
++.|+|+.++|||+|++.|++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 351
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.86 E-value=0.34 Score=43.95 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|...
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999853
No 352
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=86.76 E-value=0.25 Score=54.38 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||||++.|+|.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999996
No 353
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.70 E-value=0.35 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|+..|++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999984
No 354
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.53 E-value=0.41 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.+.|+.+|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.52 E-value=0.38 Score=43.63 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+++.|.+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 356
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=86.43 E-value=0.37 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|.|+.+||||++.+.|.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999864
No 357
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=86.43 E-value=0.35 Score=44.48 Aligned_cols=22 Identities=32% Similarity=0.134 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.+|||||+.+.|...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999999864
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=86.41 E-value=0.36 Score=43.71 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|...
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999998753
No 359
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.34 E-value=0.39 Score=43.84 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+|||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.95 E-value=0.42 Score=43.50 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.++|+.+|||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 361
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.95 E-value=0.39 Score=42.86 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+||||++.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 362
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=85.94 E-value=0.41 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|+++|...+|||+|+|+|++.
T Consensus 45 ~i~iiG~vd~GKSTLi~~Ll~~ 66 (467)
T 1r5b_A 45 NIVFIGHVDAGKSTLGGNILFL 66 (467)
T ss_dssp EEEEEECGGGTHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
Confidence 4899999999999999999853
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=85.86 E-value=0.38 Score=43.46 Aligned_cols=22 Identities=41% Similarity=0.353 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||++...|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 364
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.82 E-value=0.45 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|.|+.+||||++.+.|...
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=85.81 E-value=0.46 Score=44.38 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.|.|+|+.+|||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
No 366
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=85.80 E-value=0.42 Score=44.18 Aligned_cols=23 Identities=35% Similarity=0.264 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+|||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 367
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.78 E-value=0.36 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|...
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 368
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=85.49 E-value=7.7 Score=32.16 Aligned_cols=73 Identities=15% Similarity=0.210 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHhhcc---CCCCHhHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHhHHHHHHHHHHHHHH
Q 009154 269 NKGILERCLKLYNERMAKVR---LPLPEQSLQDAHERSKKEAMDVFDVQHFGRQH-AKKSVMQLDEEIQEAYKNVIM 341 (542)
Q Consensus 269 n~~ave~A~~~Y~~~M~~~~---lP~~~eeL~~~H~~~~~eAl~~F~~~sfgd~~-~~~~~~~L~~~i~~~~~~~~~ 341 (542)
|+..+..+++.|+..+.+.. .++++|++...-.....--+..|.++..|+.. .++..++|.++++..-..|+.
T Consensus 7 NkDlIst~ikeFnvLLnQQvF~~~~i~ee~MvtvV~DWvnfYinyy~~~~~GeqqEqdrAlqel~qeL~tl~~pFL~ 83 (102)
T 1z8u_A 7 NKDLISAGLKEFSVLLNQQVFNDALVSEEDMVTVVEDWMNFYINYYRQQVTGEPQERDKALQELRQELNTLANPFLA 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCCCHHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 56667888999998888632 35889999999999999999999999999864 345667777777765544443
No 369
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.44 E-value=0.38 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 370
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=85.43 E-value=0.45 Score=44.00 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+|||||+.+.|...
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999853
No 371
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.36 E-value=0.39 Score=47.08 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|+.++++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999974
No 372
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=85.20 E-value=0.39 Score=51.07 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||+||+.|.|.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999996
No 373
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.14 E-value=0.43 Score=45.86 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.++||.+||||+|++.|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999986
No 374
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=85.02 E-value=0.54 Score=43.42 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+|||||+.+.|...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 375
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.01 E-value=0.33 Score=46.36 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=25.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM 34 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~ 34 (542)
++|.+.|+.++||||+++.|.......|+++-.+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3789999999999999999976533346655433
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=84.86 E-value=0.44 Score=46.01 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|.|+.+|||||+.+.|...
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999763
No 377
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.80 E-value=0.45 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+++.|.+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=84.53 E-value=0.47 Score=46.90 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.+.||.+||||+|++.|.|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999986
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.37 E-value=0.46 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|...
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999753
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=84.29 E-value=0.46 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+||||++...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999763
No 381
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=84.15 E-value=0.62 Score=42.16 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|.++|+.+||||++.+.|...
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999764
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.11 E-value=0.56 Score=44.35 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+|||||+.+.|...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999854
No 383
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.03 E-value=0.49 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=16.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.+.|+.+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999754
No 384
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.92 E-value=0.64 Score=42.54 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.++|+.+||||++.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 385
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.87 E-value=0.54 Score=44.14 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|+|..+|||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999863
No 386
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=83.82 E-value=0.54 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.+|||||+.+.|...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 387
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.26 E-value=0.58 Score=48.81 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+||.++|||+|++.|.+.
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 388
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.21 E-value=0.65 Score=44.29 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|+|+.+||||++.+.|.+.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999863
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=83.18 E-value=0.57 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.++||.+||||+|++.|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 679999999999999999986
No 390
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.12 E-value=0.72 Score=43.68 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|.+.|+.+|||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 391
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.07 E-value=0.56 Score=47.09 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSC-DEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~-~~gF~v 31 (542)
+|+++|+.++||||+++.|.+... ..|..|
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V 137 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKI 137 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEE
Confidence 799999999999999999987532 245443
No 392
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=82.88 E-value=0.62 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+||||++.+.|...
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999853
No 393
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.82 E-value=0.43 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=17.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|+|.|+.+|||||+.+.|...
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999763
No 394
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.63 E-value=0.58 Score=48.00 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|+++|++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=82.59 E-value=0.69 Score=43.26 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|.|.|.|+.+|||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999763
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.42 E-value=0.79 Score=42.98 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|.++|+.+|||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 397
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=82.39 E-value=0.39 Score=56.08 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLS 24 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~ 24 (542)
+|+|+|+.|+||||||+.|.|..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
No 398
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=82.22 E-value=0.69 Score=46.73 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||.|+|+.++||||++..|.+.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH
Confidence 7899999999999999999975
No 399
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.11 E-value=0.83 Score=40.84 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+..|+||.++|||+++..|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999975
No 400
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.04 E-value=0.66 Score=43.38 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.+|||||+++.|.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 401
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.88 E-value=0.54 Score=52.38 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+++|+||.++|||||+|.++
T Consensus 350 ~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEeeCCCCHHHHHHHHH
Confidence 68999999999999999765
No 402
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.68 E-value=0.88 Score=40.60 Aligned_cols=22 Identities=41% Similarity=0.419 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.+|||||+...|...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 403
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.53 E-value=0.53 Score=44.25 Aligned_cols=34 Identities=29% Similarity=0.146 Sum_probs=25.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeeeeec
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM 34 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~ 34 (542)
+.|++-|.-||||||.++.|.......|..+-.+
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 5799999999999999999876532344544333
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=81.47 E-value=0.68 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|+|+|+.+|||||+.+.|..
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 405
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=81.20 E-value=0.12 Score=50.11 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+||.++|||+||+.|.|.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999985
No 406
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.12 E-value=0.72 Score=53.91 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.|+||||||+.|.|.
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999963
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=80.93 E-value=0.75 Score=46.49 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+.+.||.++|||+|++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999985
No 408
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=80.69 E-value=0.88 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.|+.|||||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999864
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.64 E-value=0.82 Score=44.48 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|...
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999863
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=80.28 E-value=0.77 Score=43.12 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|.|+|+.+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=80.26 E-value=0.76 Score=45.02 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+|+.++||||+++.|.+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999874
No 412
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=79.72 E-value=1 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|.++|+.+|||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999764
No 413
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.55 E-value=1 Score=46.47 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+..|+||.++|||+|++.|..
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999863
No 414
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.54 E-value=0.79 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.|+.+||||+|+..+...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999874
No 415
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=79.49 E-value=0.99 Score=42.43 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
++.|+|+.++|||+|+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999877764
No 416
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=79.40 E-value=0.79 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+|+.++|||||++.|+|.
T Consensus 418 ~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 418 TVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp EEEEECCSSSSHHHHHHHTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 417
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.33 E-value=0.81 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|+.+||||+|++.|+|.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTS
T ss_pred EEEEEecCCCcHHHHHHHhccc
Confidence 5899999999999999999986
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.10 E-value=1.1 Score=46.26 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||+|...|...
T Consensus 9 lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHHH
Confidence 7999999999999999999875
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=78.81 E-value=0.97 Score=42.10 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|+|+.+||||++...|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999999864
No 420
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.63 E-value=0.65 Score=56.02 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|+|+.++|||||++.|+|.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999986
No 421
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=78.63 E-value=0.7 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+|||||+.+.|.+.
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999875
No 422
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.62 E-value=0.7 Score=44.15 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=22.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGF 29 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF 29 (542)
++|.+.|+-++||||+++.|.......|+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999865323344
No 423
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=78.25 E-value=1.1 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.|.|+.+|||||+...|...
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 424
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.21 E-value=1 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|+|+.++|||+|++.|+..
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 579999999999999999864
No 425
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=78.07 E-value=0.72 Score=44.85 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=23.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFG 30 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~ 30 (542)
++|.+.|+.++||||+++.|.......|++
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 479999999999999999998653223444
No 426
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=77.93 E-value=0.66 Score=49.30 Aligned_cols=30 Identities=27% Similarity=0.352 Sum_probs=23.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
||.++|++++||||+++.|.+.....|..|
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 789999999999999999985432334443
No 427
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.92 E-value=1 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHH--HcC
Q 009154 2 HIQVIGPYRSGKSFLLNQL--LSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~L--lg~ 23 (542)
+++|+|+.++|||+|++.+ .|.
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl 64 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGI 64 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999994 454
No 428
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=77.57 E-value=1.1 Score=44.56 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|-++|+.+|||||+.+.|+..
T Consensus 35 livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 429
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=77.40 E-value=1.2 Score=46.72 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||+||+.|.+.
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~ 49 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFV 49 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999875
No 430
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=77.35 E-value=1.1 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||+||+.+.|.
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 6899999999999999999874
No 431
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=77.29 E-value=1.4 Score=41.74 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|.++|+.+|||||+.+.|...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 432
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=77.16 E-value=1.1 Score=50.85 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++|+||.++|||+||+.+.|.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhh
Confidence 6899999999999999999874
No 433
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=77.16 E-value=2.2 Score=43.70 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=34.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCCCCeeeeec-CcCccceEEeeecccccccCCCceeEEEeecCCcccc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCDEGFGVGHM-RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFESI 71 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~~-~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~~~ 71 (542)
|.++|..++|||.|++++.+. |.-..+ .-..|-|+-.-. + +..+.+-+.||.|....
T Consensus 2 IvllGdsgvGKTSLl~~~~~~-----~~~~~~~~~~~Tig~~~~~--v-----~~~v~LqIWDTAGQErf 59 (331)
T 3r7w_B 2 VLLMGVRRCGKSSICKVVFHN-----MQPLDTLYLESTSNPSLEH--F-----STLIDLAVMELPGQLNY 59 (331)
T ss_dssp EEEECSTTSSTTHHHHHHHSC-----CCSGGGTTCCCCCSCCCEE--E-----CSSSCEEEEECCSCSSS
T ss_pred EEEECCCCCCHHHHHHHHHcC-----CCCCccceecCeeeeeeEE--E-----ccEEEEEEEECCCchhc
Confidence 568999999999999998864 221100 011233332211 1 13477899999997654
No 434
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=77.08 E-value=1.2 Score=42.61 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|-+.||.+||||+|+..|.+.
T Consensus 48 vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999875
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.08 E-value=1.4 Score=45.09 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||++||||+|...|+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 7899999999999999999865
No 436
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=76.98 E-value=0.57 Score=45.33 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=17.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.+.|+.++||||+.+.|...
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 437
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=76.89 E-value=1.1 Score=48.27 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+|+.++|||+|++++++.
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 438
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.85 E-value=1.4 Score=41.35 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+..|+|+.++|||+++..|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56899999999999999875
No 439
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=76.57 E-value=1.2 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++|||+|++.|+|.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.27 E-value=1.3 Score=43.43 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+|.|+|+.+|||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 441
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=75.89 E-value=1.5 Score=40.07 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++-|.|+.|+|||+|+..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 442
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=75.87 E-value=1.5 Score=40.67 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.||.+||||+|+..+...
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999864
No 443
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=75.82 E-value=1 Score=43.55 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|.|+-+|||||+++.|...
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999875
No 444
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=75.78 E-value=1.6 Score=44.55 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||+|...|+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6889999999999999999865
No 445
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.63 E-value=0.85 Score=49.96 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.++|+.+||||||++.|.+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 6899999999999999999986
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=75.57 E-value=1.7 Score=41.15 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|-++||.+|||+|....|...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999999864
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=75.24 E-value=1.3 Score=42.34 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
++.++|+.++|||+|+|.|+.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHH
Confidence 688999999999999999983
No 448
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.23 E-value=1.4 Score=46.20 Aligned_cols=20 Identities=35% Similarity=0.584 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
++.|+|+.++|||+|+.+|.
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 68999999999999999875
No 449
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.09 E-value=1.5 Score=44.41 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+|+|+.++||||++..|.+.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 450
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=75.03 E-value=0.63 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.+.|+-++|||++.+.|...
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999865
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.95 E-value=1.4 Score=42.00 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|+|.|+-+|||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999875
No 452
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=74.84 E-value=0.52 Score=48.73 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+++++|+.++|||+||+.|.+.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l 83 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLL 83 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999888654
No 453
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.27 E-value=1.7 Score=43.66 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+.|.||.|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999875
No 454
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=73.72 E-value=1.4 Score=38.95 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.|+.++|||+|+..+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999864
No 455
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=73.64 E-value=1.8 Score=43.77 Aligned_cols=20 Identities=45% Similarity=0.546 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+..|+||.++|||+||..+.
T Consensus 25 ~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999874
No 456
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.62 E-value=1.5 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|.|.|+.|+|||+|++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 457
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.50 E-value=1.8 Score=44.43 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||+|...|+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999975
No 458
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.97 E-value=1.7 Score=43.69 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.+|+|+.++|||+||..|...
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred cEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999853
No 459
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.64 E-value=1.7 Score=43.62 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|+.++|||++++.|.+.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999864
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.52 E-value=1.8 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||+|...|+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 7899999999999999999864
No 461
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=72.45 E-value=2.1 Score=43.69 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|+||.+||||+|...|...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999975
No 462
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=72.35 E-value=1.6 Score=48.57 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=15.2
Q ss_pred EEEEECCCCCCHHHHH
Q 009154 2 HIQVIGPYRSGKSFLL 17 (542)
Q Consensus 2 VVsV~G~~rtGKSfLL 17 (542)
+++|+||.++||||||
T Consensus 46 ~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 46 LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHh
Confidence 6899999999999997
No 463
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=72.31 E-value=2 Score=42.82 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|+++|+.++||||++..|.+.
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999875
No 464
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=72.23 E-value=2 Score=44.42 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+||.++|||+||+.|.+.
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHh
Confidence 5789999999999999999864
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=71.80 E-value=2.2 Score=38.66 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|-+.|+.|+|||+|+..+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998864
No 466
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=71.70 E-value=2.1 Score=40.35 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.4
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeeeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGVGH 33 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~vg~ 33 (542)
.|++-|.-||||||+++.|.... ..|..+-.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~~ 34 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL-VKDYDVIM 34 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TTTSCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHH-HCCCCEEE
Confidence 58999999999999999988653 23444433
No 467
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.39 E-value=2.3 Score=41.92 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.|+|||+|++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6889999999999999999864
No 468
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=71.31 E-value=1.3 Score=45.04 Aligned_cols=21 Identities=24% Similarity=0.186 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|+|.|+.|+|||+|++.+...
T Consensus 55 i~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 55 YGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp EECTTCCSSSHHHHHHHHHHH
T ss_pred EeCcCcCCCCHHHHHHHHHHH
Confidence 344999999999999999864
No 469
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=71.16 E-value=2.1 Score=42.25 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+|.|.|+.|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999999864
No 470
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=71.00 E-value=2.6 Score=41.10 Aligned_cols=28 Identities=25% Similarity=0.099 Sum_probs=23.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
++|++.|..+||||+..+.|... -||.+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~---~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN---YSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---SCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCeE
Confidence 48999999999999999999863 26765
No 471
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=70.42 E-value=2.5 Score=39.62 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+||+|.|+++||||++...|...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 48999999999999999999865
No 472
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.41 E-value=2.3 Score=40.61 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|.|+|+.++|||+|...|...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999999999964
No 473
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=70.32 E-value=1.3 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.||.|||||+|+..+...
T Consensus 154 ~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999998864
No 474
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=69.81 E-value=2.3 Score=46.17 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 009154 3 IQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg 22 (542)
+.|+|+.+||||++||.|+.
T Consensus 170 lLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 170 LLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999875
No 475
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=69.58 E-value=2.2 Score=44.06 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|.||.++|||+|+.+++..
T Consensus 63 i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=69.58 E-value=2.6 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.+|-++|+.+|||||+.+.|+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37889999999999999999864
No 477
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=69.47 E-value=1.8 Score=45.76 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
+|+++|+.++||||++..|.+.....|..|
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V 129 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRP 129 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 789999999999999999987533334443
No 478
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.91 E-value=2.3 Score=42.46 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 009154 3 IQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg 22 (542)
+.+.||.|+|||+|++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999988
No 479
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=67.78 E-value=3.1 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
+.|+|-|+-++||||+++.|...
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~ 27 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVAL 27 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 480
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=67.32 E-value=5.2 Score=43.55 Aligned_cols=97 Identities=19% Similarity=0.243 Sum_probs=51.8
Q ss_pred EEEECCCCCCHHHHHHHHHcCCCC------------CCeeeeec-CcCccceEEeeecccccccCCCceeEEEeecCCcc
Q 009154 3 IQVIGPYRSGKSFLLNQLLSLSCD------------EGFGVGHM-RDTKTKGIWVWGNPVEMEIDGSRTSVFYLDTEGFE 69 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~~~~------------~gF~vg~~-~~~~TkGIWmW~~p~~~~~~g~~~~vlllDTEG~~ 69 (542)
|+|+|--.+|||||.-+||-+... .+-.+... ..-.-+||=+-+...... ..+..+=||||||--
T Consensus 34 iaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~--~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 34 FAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP--YRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE--ETTEEEEEECCCCGG
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE--ECCEEEEEEeCCCcH
Confidence 799999999999999999843200 00111111 011245665555444433 346788899999975
Q ss_pred cccCcchhhhHHHHHHHhhhccEEEcCCCCcchHhhh
Q 009154 70 SIGKSNVYDDRIFALATVMSSVLIYNLPETIREADIS 106 (542)
Q Consensus 70 ~~e~~~~~D~~IFaLa~LLSS~lIYN~~g~I~e~al~ 106 (542)
|... .-.=||.++=+-++|.+....+..+...
T Consensus 112 DF~~-----Ev~raL~~~DgAvlVvda~~GV~~qT~~ 143 (548)
T 3vqt_A 112 DFSE-----DTYRVLTAVDSALVVIDAAKGVEAQTRK 143 (548)
T ss_dssp GCSH-----HHHHHHHSCSEEEEEEETTTBSCHHHHH
T ss_pred HHHH-----HHHHHHHhcCceEEEeecCCCcccccHH
Confidence 5321 1222555555666777766665554433
No 481
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=67.20 E-value=2.6 Score=49.54 Aligned_cols=21 Identities=43% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++.|+||.++|||+||+.+ |.
T Consensus 791 i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 791 CVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEECCTTSSHHHHHHHH-HH
T ss_pred EEEEECCCCCChHHHHHHH-HH
Confidence 6899999999999999999 75
No 482
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=67.05 E-value=3.6 Score=39.28 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeee
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSLSCDEGFGV 31 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~~~~~gF~v 31 (542)
.|++.|.-+|||||..+.|... |+.+
T Consensus 11 ~iglTGgigsGKStv~~~l~~~----g~~v 36 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAAR----GASL 36 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT----TCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHC----CCcE
Confidence 4899999999999999998763 5654
No 483
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=66.96 E-value=2.7 Score=41.71 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
+-+.||.|||||+|+..+.+.
T Consensus 40 lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 668999999999999999874
No 484
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.83 E-value=2.9 Score=40.81 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
-|-+.||.|||||+|++.+.+.
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 3678999999999999999975
No 485
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=66.13 E-value=3.2 Score=40.50 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.||.+||||+++..|.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 4789999999999999999875
No 486
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=66.03 E-value=2.1 Score=49.77 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
+++|+||.++||||||+.+.+
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHH
Confidence 689999999999999999865
No 487
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=64.94 E-value=2.9 Score=41.83 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-|.||.|||||+|++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999874
No 488
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=64.89 E-value=3.7 Score=37.81 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHc
Q 009154 2 HIQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg 22 (542)
++-+.|+.++|||+++-+++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999866653
No 489
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=64.70 E-value=2.6 Score=49.19 Aligned_cols=20 Identities=45% Similarity=0.529 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+++|+|+.++|||+|++.|+
T Consensus 670 ivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 670 LTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EEEEECSTTSSHHHHHTTTH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 79999999999999999964
No 490
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=64.25 E-value=3.7 Score=39.25 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
||-|+||.+|||+|....|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999999864
No 491
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=64.06 E-value=3.4 Score=48.06 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q 009154 2 HIQVIGPYRSGKSFLLNQLL 21 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Ll 21 (542)
+++|+||.++|||+||+.+.
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999983
No 492
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=63.86 E-value=4.3 Score=42.31 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|+|-|+-++||||+++.|...
T Consensus 51 fIt~EG~dGsGKTT~~~~Lae~ 72 (376)
T 1of1_A 51 RVYIDGPHGMGKTTTTQLLVAL 72 (376)
T ss_dssp EEEECSSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999875
No 493
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=63.85 E-value=3.4 Score=40.87 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHcC
Q 009154 2 HIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
.|-+.||.|||||+|+..+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 3678999999999999999975
No 494
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=63.20 E-value=5.2 Score=34.89 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|-+.|+.+||||++...+...
T Consensus 27 vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999865
No 495
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=63.13 E-value=3.7 Score=39.69 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|-+.||.+||||+|+..+.+.
T Consensus 54 ~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 668999999999999999875
No 496
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=63.12 E-value=1.9 Score=49.50 Aligned_cols=21 Identities=43% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHH-HHc
Q 009154 2 HIQVIGPYRSGKSFLLNQ-LLS 22 (542)
Q Consensus 2 VVsV~G~~rtGKSfLLN~-Llg 22 (542)
+|+|+|+.++|||+|++. |+|
T Consensus 525 iv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EEEEECCTTSSHHHHCCCCCHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHH
Confidence 799999999999999997 654
No 497
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=63.10 E-value=3.8 Score=38.78 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHcC
Q 009154 3 IQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg~ 23 (542)
|-+.||.+||||+|+..+...
T Consensus 42 vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999864
No 498
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=62.27 E-value=3.6 Score=38.39 Aligned_cols=20 Identities=45% Similarity=0.476 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 009154 3 IQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg 22 (542)
+-|+|+.|||||++.-+|..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 67999999999999998874
No 499
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=62.21 E-value=4.4 Score=38.70 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHcC
Q 009154 1 MHIQVIGPYRSGKSFLLNQLLSL 23 (542)
Q Consensus 1 ~VVsV~G~~rtGKSfLLN~Llg~ 23 (542)
++|.+.|+.++||||+++.|...
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
No 500
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=62.20 E-value=3.7 Score=42.73 Aligned_cols=20 Identities=40% Similarity=0.506 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHc
Q 009154 3 IQVIGPYRSGKSFLLNQLLS 22 (542)
Q Consensus 3 VsV~G~~rtGKSfLLN~Llg 22 (542)
+.|+|+.|||||++++.++.
T Consensus 56 ~~i~G~tGsGKs~~~~~li~ 75 (437)
T 1e9r_A 56 LLVNGATGTGKSVLLRELAY 75 (437)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57999999999999988774
Done!