Query 009156
Match_columns 542
No_of_seqs 344 out of 1413
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 21:06:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1043 Ca2+-binding transmemb 100.0 1.7E-74 3.6E-79 613.7 17.9 330 1-331 130-463 (499)
2 PF07766 LETM1: LETM1-like pro 100.0 1.9E-68 4E-73 540.6 12.9 256 1-260 12-268 (268)
3 KOG4263 Putative receptor CCR1 100.0 8.6E-32 1.9E-36 262.2 15.0 215 4-263 64-289 (299)
4 COG5126 FRQ1 Ca2+-binding prot 99.3 6.2E-11 1.4E-15 111.8 15.2 143 365-531 14-157 (160)
5 KOG0027 Calmodulin and related 99.2 1.7E-10 3.8E-15 107.3 15.0 90 441-530 57-149 (151)
6 KOG0030 Myosin essential light 99.2 1.1E-10 2.4E-15 106.7 8.8 86 442-529 62-150 (152)
7 cd05022 S-100A13 S-100A13: S-1 99.1 1.2E-10 2.7E-15 99.9 6.8 64 467-530 9-75 (89)
8 cd05027 S-100B S-100B: S-100B 99.0 9.6E-10 2.1E-14 94.1 8.2 64 467-530 9-79 (88)
9 PF13499 EF-hand_7: EF-hand do 99.0 9.3E-10 2E-14 87.7 7.3 62 467-528 1-66 (66)
10 cd05029 S-100A6 S-100A6: S-100 98.9 2.2E-09 4.7E-14 91.9 6.3 65 467-531 11-80 (88)
11 cd05025 S-100A1 S-100A1: S-100 98.9 3.7E-09 8E-14 90.5 7.7 71 461-531 4-81 (92)
12 KOG0027 Calmodulin and related 98.9 4.3E-09 9.4E-14 97.9 8.4 70 466-535 8-77 (151)
13 KOG0028 Ca2+-binding protein ( 98.9 8.9E-09 1.9E-13 96.3 9.4 88 442-530 83-170 (172)
14 cd05031 S-100A10_like S-100A10 98.9 7.4E-09 1.6E-13 89.1 7.8 65 466-530 8-79 (94)
15 cd05026 S-100Z S-100Z: S-100Z 98.8 1.3E-08 2.7E-13 87.9 8.0 65 467-531 11-82 (93)
16 KOG0031 Myosin regulatory ligh 98.8 1.7E-07 3.7E-12 87.4 14.7 88 444-532 80-167 (171)
17 cd00052 EH Eps15 homology doma 98.7 2.7E-08 5.8E-13 78.8 7.1 60 469-530 2-61 (67)
18 cd00213 S-100 S-100: S-100 dom 98.7 4.2E-08 9.1E-13 83.0 7.4 66 466-531 8-80 (88)
19 smart00027 EH Eps15 homology d 98.7 5.9E-08 1.3E-12 83.7 8.1 63 466-530 10-72 (96)
20 PF13833 EF-hand_8: EF-hand do 98.6 1.3E-07 2.8E-12 72.7 6.2 52 479-530 1-53 (54)
21 cd05023 S-100A11 S-100A11: S-1 98.6 1.9E-07 4.1E-12 80.2 7.8 65 467-531 10-81 (89)
22 PTZ00183 centrin; Provisional 98.5 5.1E-07 1.1E-11 82.8 10.5 84 446-530 71-154 (158)
23 PF14658 EF-hand_9: EF-hand do 98.5 2E-07 4.4E-12 75.6 6.3 60 471-530 3-64 (66)
24 PTZ00184 calmodulin; Provision 98.5 5.6E-07 1.2E-11 81.2 9.9 83 446-529 65-147 (149)
25 cd00051 EFh EF-hand, calcium b 98.5 3.8E-07 8.1E-12 69.0 7.2 61 468-528 2-62 (63)
26 COG5126 FRQ1 Ca2+-binding prot 98.5 3.7E-07 7.9E-12 86.4 7.9 73 466-539 20-93 (160)
27 KOG0028 Ca2+-binding protein ( 98.5 3E-07 6.5E-12 86.2 6.9 75 465-539 32-107 (172)
28 KOG0034 Ca2+/calmodulin-depend 98.4 1.4E-06 3E-11 84.7 9.9 85 447-532 86-177 (187)
29 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.3E-06 2.8E-11 78.8 7.8 62 465-530 47-108 (116)
30 cd05030 calgranulins Calgranul 98.3 2.1E-06 4.6E-11 73.3 6.9 64 467-530 9-79 (88)
31 PTZ00183 centrin; Provisional 98.3 3.3E-06 7.2E-11 77.4 8.4 63 467-529 18-80 (158)
32 PTZ00184 calmodulin; Provision 98.2 4.2E-06 9E-11 75.5 8.0 64 467-530 12-75 (149)
33 KOG0030 Myosin essential light 98.0 1E-05 2.2E-10 74.6 5.4 70 461-531 7-78 (152)
34 KOG0037 Ca2+-binding protein, 98.0 3.1E-05 6.7E-10 76.3 9.0 76 446-529 112-187 (221)
35 KOG0044 Ca2+ sensor (EF-Hand s 97.9 3.6E-05 7.7E-10 75.2 7.7 87 441-529 77-174 (193)
36 PLN02964 phosphatidylserine de 97.8 4.2E-05 9E-10 86.6 7.9 66 467-532 180-245 (644)
37 KOG0031 Myosin regulatory ligh 97.8 7.1E-05 1.5E-09 70.1 7.1 59 467-529 33-91 (171)
38 KOG0041 Predicted Ca2+-binding 97.7 6.5E-05 1.4E-09 73.1 5.9 62 468-529 101-162 (244)
39 KOG0038 Ca2+-binding kinase in 97.6 0.00014 3E-09 67.7 6.9 88 445-533 88-180 (189)
40 PF00036 EF-hand_1: EF hand; 97.6 7E-05 1.5E-09 51.2 3.5 28 468-495 2-29 (29)
41 PF13405 EF-hand_6: EF-hand do 97.6 7.2E-05 1.6E-09 51.5 3.5 30 467-496 1-31 (31)
42 PLN02964 phosphatidylserine de 97.6 0.00017 3.6E-09 81.8 8.2 49 445-495 196-244 (644)
43 cd05024 S-100A10 S-100A10: A s 97.6 0.00035 7.6E-09 60.4 8.1 63 467-530 9-76 (91)
44 KOG0044 Ca2+ sensor (EF-Hand s 97.5 0.00074 1.6E-08 66.1 10.3 90 441-531 39-129 (193)
45 PRK12309 transaldolase/EF-hand 97.3 0.00077 1.7E-08 72.6 8.6 54 464-530 332-385 (391)
46 PF00036 EF-hand_1: EF hand; 97.2 0.00036 7.8E-09 47.8 3.5 28 503-530 1-28 (29)
47 KOG0036 Predicted mitochondria 97.2 0.0011 2.3E-08 70.9 8.6 67 466-532 82-148 (463)
48 KOG0377 Protein serine/threoni 97.2 0.00099 2.1E-08 71.5 7.7 63 468-530 549-615 (631)
49 PF12763 EF-hand_4: Cytoskelet 97.1 0.0021 4.5E-08 57.0 7.8 62 466-530 10-71 (104)
50 KOG0036 Predicted mitochondria 96.8 0.003 6.5E-08 67.5 7.4 67 464-530 12-79 (463)
51 PF13202 EF-hand_5: EF hand; P 96.5 0.0026 5.7E-08 42.0 3.0 23 469-491 2-24 (25)
52 KOG0037 Ca2+-binding protein, 96.4 0.0097 2.1E-07 59.0 7.3 62 467-528 58-120 (221)
53 PF02037 SAP: SAP domain; Int 96.2 0.0084 1.8E-07 42.8 4.2 34 211-244 2-35 (35)
54 KOG0046 Ca2+-binding actin-bun 96.2 0.011 2.4E-07 64.9 6.9 63 467-530 20-85 (627)
55 KOG0040 Ca2+-binding actin-bun 96.1 0.016 3.6E-07 69.6 8.5 84 447-530 2225-2324(2399)
56 PF10591 SPARC_Ca_bdg: Secrete 96.1 0.0057 1.2E-07 54.9 3.6 60 465-526 53-112 (113)
57 PF13202 EF-hand_5: EF hand; P 96.0 0.0081 1.8E-07 39.6 3.3 25 504-528 1-25 (25)
58 KOG4065 Uncharacterized conser 95.7 0.019 4.1E-07 51.8 5.4 57 471-527 72-142 (144)
59 smart00513 SAP Putative DNA-bi 95.6 0.025 5.4E-07 40.2 4.5 35 210-244 1-35 (35)
60 KOG4223 Reticulocalbin, calume 95.1 0.031 6.8E-07 58.3 5.3 63 470-532 167-230 (325)
61 PF14788 EF-hand_10: EF hand; 94.7 0.08 1.7E-06 41.1 5.4 48 482-529 1-48 (51)
62 PF13405 EF-hand_6: EF-hand do 94.7 0.042 9.1E-07 37.6 3.5 27 503-529 1-27 (31)
63 KOG4223 Reticulocalbin, calume 94.6 0.028 6.1E-07 58.6 3.5 57 470-526 245-301 (325)
64 smart00054 EFh EF-hand, calciu 94.3 0.05 1.1E-06 34.2 3.0 27 468-494 2-28 (29)
65 PF13833 EF-hand_8: EF-hand do 93.8 0.16 3.4E-06 38.7 5.3 46 447-494 7-53 (54)
66 KOG0042 Glycerol-3-phosphate d 93.3 0.11 2.5E-06 57.8 5.1 72 467-538 594-665 (680)
67 KOG1043 Ca2+-binding transmemb 93.2 1.6 3.5E-05 48.5 13.8 262 241-529 44-325 (499)
68 PF13499 EF-hand_7: EF-hand do 92.8 0.23 5.1E-06 39.1 5.1 46 447-492 19-66 (66)
69 smart00054 EFh EF-hand, calciu 92.8 0.13 2.9E-06 32.1 3.0 28 503-530 1-28 (29)
70 KOG4251 Calcium binding protei 91.7 0.1 2.2E-06 52.8 2.1 61 465-525 100-163 (362)
71 KOG1029 Endocytic adaptor prot 91.4 0.22 4.8E-06 57.1 4.6 61 467-529 196-256 (1118)
72 KOG0034 Ca2+/calmodulin-depend 91.0 0.47 1E-05 46.4 5.9 79 447-531 53-133 (187)
73 KOG2243 Ca2+ release channel ( 90.9 1.4 3.1E-05 53.3 10.3 58 470-528 4061-4118(5019)
74 PF09279 EF-hand_like: Phospho 90.0 0.75 1.6E-05 38.3 5.6 64 467-531 1-70 (83)
75 KOG1955 Ral-GTPase effector RA 88.6 0.83 1.8E-05 50.3 6.0 62 466-529 231-292 (737)
76 KOG2643 Ca2+ binding protein, 86.2 0.47 1E-05 51.6 2.4 64 467-530 234-314 (489)
77 PF02037 SAP: SAP domain; Int 84.7 1.5 3.3E-05 31.1 3.8 35 161-195 1-35 (35)
78 cd05022 S-100A13 S-100A13: S-1 84.7 2.5 5.5E-05 36.4 5.8 49 446-495 27-76 (89)
79 KOG2643 Ca2+ binding protein, 84.5 0.76 1.6E-05 50.0 3.0 75 447-530 378-453 (489)
80 KOG2562 Protein phosphatase 2 84.4 1.3 2.9E-05 48.5 4.8 62 471-535 283-348 (493)
81 KOG0035 Ca2+-binding actin-bun 84.2 2.3 5.1E-05 50.2 7.0 83 448-530 728-816 (890)
82 PF14788 EF-hand_10: EF hand; 83.9 2.7 5.9E-05 32.7 5.0 47 447-495 4-50 (51)
83 smart00513 SAP Putative DNA-bi 83.5 1.8 3.9E-05 30.6 3.7 33 162-194 2-34 (35)
84 KOG4666 Predicted phosphate ac 83.2 1.3 2.7E-05 46.8 3.9 64 466-530 296-359 (412)
85 KOG0377 Protein serine/threoni 82.7 6.5 0.00014 43.2 9.0 64 466-529 464-574 (631)
86 cd05029 S-100A6 S-100A6: S-100 81.0 4.2 9.1E-05 34.7 5.7 47 447-495 31-80 (88)
87 PF08726 EFhand_Ca_insen: Ca2+ 78.7 0.93 2E-05 37.4 0.9 52 467-526 7-65 (69)
88 cd05026 S-100Z S-100Z: S-100Z 78.5 5.6 0.00012 34.1 5.8 49 447-495 31-82 (93)
89 KOG3866 DNA-binding protein of 78.2 3.1 6.8E-05 43.6 4.7 68 470-537 248-331 (442)
90 KOG3555 Ca2+-binding proteogly 77.8 3.1 6.8E-05 44.2 4.7 61 467-531 251-311 (434)
91 cd00051 EFh EF-hand, calcium b 77.3 2.8 6E-05 30.7 3.2 29 504-532 2-30 (63)
92 KOG1029 Endocytic adaptor prot 75.7 6.1 0.00013 46.0 6.5 55 471-528 21-75 (1118)
93 KOG4251 Calcium binding protei 75.6 5.1 0.00011 40.9 5.3 63 465-527 280-342 (362)
94 cd05030 calgranulins Calgranul 73.7 8.1 0.00018 32.8 5.4 49 447-495 29-80 (88)
95 cd05027 S-100B S-100B: S-100B 70.7 11 0.00023 32.2 5.5 49 445-495 27-80 (88)
96 cd05023 S-100A11 S-100A11: S-1 69.8 6.3 0.00014 33.8 3.9 47 447-495 30-81 (89)
97 PRK12309 transaldolase/EF-hand 69.4 29 0.00063 37.8 9.8 26 469-494 360-385 (391)
98 PF05042 Caleosin: Caleosin re 69.0 17 0.00037 35.2 7.0 65 469-533 10-127 (174)
99 cd00252 SPARC_EC SPARC_EC; ext 67.7 5.8 0.00013 35.9 3.4 30 499-528 45-74 (116)
100 cd00052 EH Eps15 homology doma 66.3 9 0.0002 29.5 3.9 45 447-495 18-62 (67)
101 cd05031 S-100A10_like S-100A10 65.4 7.6 0.00016 33.1 3.5 31 466-496 51-81 (94)
102 cd00213 S-100 S-100: S-100 dom 64.8 17 0.00037 30.2 5.6 49 447-495 29-80 (88)
103 cd05025 S-100A1 S-100A1: S-100 64.0 9.6 0.00021 32.3 3.9 49 447-495 30-81 (92)
104 KOG0169 Phosphoinositide-speci 63.1 13 0.00028 43.3 5.7 66 465-530 135-200 (746)
105 KOG2562 Protein phosphatase 2 61.3 12 0.00026 41.3 4.9 78 447-526 334-420 (493)
106 smart00027 EH Eps15 homology d 60.7 13 0.00028 31.7 4.2 45 447-495 29-73 (96)
107 KOG3449 60S acidic ribosomal p 57.9 36 0.00078 30.7 6.4 55 468-527 3-57 (112)
108 KOG4578 Uncharacterized conser 57.8 8 0.00017 41.0 2.7 64 467-530 334-398 (421)
109 PF05517 p25-alpha: p25-alpha 54.9 42 0.00091 31.7 6.9 62 470-531 6-70 (154)
110 PF07766 LETM1: LETM1-like pro 51.1 15 0.00033 37.8 3.5 40 160-199 216-256 (268)
111 cd05024 S-100A10 S-100A10: A s 46.9 55 0.0012 28.5 5.7 29 467-495 49-77 (91)
112 KOG0041 Predicted Ca2+-binding 46.1 23 0.00049 35.4 3.6 32 503-534 100-131 (244)
113 PF12763 EF-hand_4: Cytoskelet 45.8 24 0.00051 31.3 3.4 30 466-495 43-72 (104)
114 TIGR00578 ku70 ATP-dependent D 45.1 32 0.0007 39.4 5.2 37 209-245 548-584 (584)
115 PF09069 EF-hand_3: EF-hand; 43.4 1.4E+02 0.0031 26.0 7.7 63 465-530 2-75 (90)
116 PF14658 EF-hand_9: EF-hand do 41.4 63 0.0014 26.6 5.0 47 447-494 17-64 (66)
117 PRK10219 DNA-binding transcrip 41.3 2.3E+02 0.005 24.3 10.2 80 140-247 19-99 (107)
118 smart00540 LEM in nuclear memb 41.0 51 0.0011 25.0 4.0 33 210-242 3-39 (44)
119 KOG2871 Uncharacterized conser 40.9 19 0.0004 38.9 2.3 62 465-526 308-370 (449)
120 KOG0998 Synaptic vesicle prote 36.8 15 0.00033 43.9 1.0 62 467-530 284-345 (847)
121 PRK11511 DNA-binding transcrip 36.0 3.2E+02 0.007 24.5 10.6 80 140-247 23-103 (127)
122 KOG4666 Predicted phosphate ac 35.7 71 0.0015 34.2 5.5 62 467-528 260-322 (412)
123 PF07499 RuvA_C: RuvA, C-termi 35.1 86 0.0019 23.5 4.6 40 485-528 3-42 (47)
124 KOG0751 Mitochondrial aspartat 34.5 84 0.0018 35.4 6.0 72 447-524 166-238 (694)
125 KOG0751 Mitochondrial aspartat 33.0 46 0.001 37.3 3.8 45 447-495 93-137 (694)
126 TIGR01848 PHA_reg_PhaR polyhyd 32.8 99 0.0022 27.8 5.2 59 473-531 10-78 (107)
127 PF00404 Dockerin_1: Dockerin 32.6 40 0.00087 21.6 2.0 16 512-527 1-16 (21)
128 PF07498 Rho_N: Rho terminatio 32.3 54 0.0012 24.3 3.0 30 211-240 3-34 (43)
129 PF08349 DUF1722: Protein of u 32.0 1.1E+02 0.0024 27.4 5.6 82 446-530 11-97 (117)
130 cd07313 terB_like_2 tellurium 31.9 58 0.0013 27.8 3.6 51 479-529 12-64 (104)
131 PTZ00373 60S Acidic ribosomal 31.0 1.7E+02 0.0038 26.5 6.5 53 469-526 6-58 (112)
132 KOG0038 Ca2+-binding kinase in 30.2 55 0.0012 31.2 3.3 65 463-530 71-136 (189)
133 PF03672 UPF0154: Uncharacteri 27.7 1.1E+02 0.0023 25.2 4.1 33 479-511 28-60 (64)
134 COG3763 Uncharacterized protei 26.5 1.1E+02 0.0024 25.5 4.1 34 479-512 35-68 (71)
135 PRK12768 CysZ-like protein; Re 26.4 1.1E+02 0.0023 31.3 4.9 39 32-70 177-217 (240)
136 PF08976 DUF1880: Domain of un 26.2 46 0.001 30.4 2.0 32 498-529 3-34 (118)
137 KOG3555 Ca2+-binding proteogly 26.1 61 0.0013 34.9 3.2 65 463-527 208-275 (434)
138 PRK00523 hypothetical protein; 25.8 1.2E+02 0.0025 25.5 4.1 33 479-511 36-68 (72)
139 cd05833 Ribosomal_P2 Ribosomal 24.5 2.6E+02 0.0057 25.1 6.5 54 470-528 5-58 (109)
140 PHA02325 hypothetical protein 24.3 24 0.00052 28.8 -0.1 11 2-12 17-27 (72)
141 COG2058 RPP1A Ribosomal protei 24.1 2.4E+02 0.0053 25.5 6.1 51 472-528 7-57 (109)
142 PF03683 UPF0175: Uncharacteri 23.6 1.3E+02 0.0028 25.0 4.1 32 210-241 43-74 (76)
143 KOG1707 Predicted Ras related/ 23.2 79 0.0017 36.3 3.5 55 467-527 316-374 (625)
144 PF07631 PSD4: Protein of unkn 22.4 1.3E+02 0.0028 27.7 4.2 66 189-254 8-73 (128)
145 KOG4004 Matricellular protein 21.8 38 0.00082 33.8 0.7 57 471-529 192-249 (259)
146 PRK15340 transcriptional regul 21.7 2.7E+02 0.0058 28.1 6.6 58 127-196 99-168 (216)
147 PRK15066 inner membrane transp 21.3 49 0.0011 33.2 1.4 18 66-83 58-75 (257)
148 PF07879 PHB_acc_N: PHB/PHA ac 21.0 1.5E+02 0.0031 24.4 3.7 40 473-512 10-59 (64)
149 PRK01844 hypothetical protein; 20.6 1.7E+02 0.0036 24.6 4.0 33 479-511 35-67 (72)
150 KOG4347 GTPase-activating prot 20.5 98 0.0021 35.8 3.6 57 467-524 556-612 (671)
No 1
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=100.00 E-value=1.7e-74 Score=613.71 Aligned_cols=330 Identities=52% Similarity=0.850 Sum_probs=311.0
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHcCCCcchhh
Q 009156 1 MQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTF 80 (542)
Q Consensus 1 ~~hY~~G~KlL~~d~Kis~~l~~k~~~G~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPf~E~lLPv~lklFPnmLPSTF 80 (542)
++|||+|||+||.|+|++.+++|+++.|+.|||||++||+||+.|+||||||++|++|||+|+++|+++++|||||||||
T Consensus 130 lqhy~~gtkll~~e~kisaklLlkll~g~~ltrrE~~qL~rt~~d~frLvPfs~flivPf~El~Lp~~lKlfp~~lpstf 209 (499)
T KOG1043|consen 130 LQHYVDGTKLLGKEIKISAKLLLKLLKGYELTRRERGQLKRTCSDIFRLVPFSKFLIVPFMELLLPIFLKLFPNDLPSTF 209 (499)
T ss_pred hHHHhhhhhhhhhhhhhhHHHHHHHHccCeeeHHHhhhHHhhccchheeccceeeeeeehHHHHhHHHHhhccccchhhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHhc-CCCCCCHHHHHHHHhhcCCcc
Q 009156 81 QDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVR-TGAGVSNDEILAFAKLFNDEL 159 (542)
Q Consensus 81 ~~~~q~~~~lkk~l~~R~~~akfLq~t~~e~~~~~~~~~~~~~~~~~~~~~~f~~kvr-~G~~ps~eeil~~aklF~d~l 159 (542)
++..+++++..+++..|.++++|||+|+.+|....+.++++.+.+.. +|..|+.++| .|..+|+++|+.||++|+|+.
T Consensus 210 q~~kk~~~k~~k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~fd~f~~kvr~~~~~~S~eeii~~aklf~de~ 288 (499)
T KOG1043|consen 210 QESKKEEEKLSKKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-EFDRFLGKVRFIGLGVSTEEIIAFAKLFSDEI 288 (499)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-HHHHHHHHhcccCCCccHHHHHHHHHHhccch
Confidence 99999888888888899999999999999999888776666665555 8999999999 699999999999999999999
Q ss_pred ccCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHHhhHhHHHhc-cCCCCHHHHHHHHHhcCCCCC-CCHHHHH
Q 009156 160 TLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEG-VESLSEAELRQACRDRGLLGL-LSVEEMR 237 (542)
Q Consensus 160 ~LdnLsr~~L~alcr~~~l~p~g~~~~LR~rLr~rl~~L~~DD~lI~~EG-v~sLs~~EL~~AC~~RGi~~~-~s~e~lr 237 (542)
+||||+|+||++||+||+++|||||.+|||+|+++|++|+.||..|.+|| |++|+..||+.||++|||++. +++++|+
T Consensus 289 ~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik~ik~dD~~I~~eg~v~~ls~~el~~aC~~rgmra~gv~~e~l~ 368 (499)
T KOG1043|consen 289 TLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIKEIKKDDKHIATEGAVESLSLLELQIACRERGMRALGVSEERLR 368 (499)
T ss_pred hhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHHHhcccccchhhhhhhhHhhHHHHHHHHHhhhcchhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999 999999999999999999985 7889999
Q ss_pred HHHHHHHhcccCCCCChhHHHhHhhhccCCCCChHHHHHHHhcc-CChhhhhhhcccccCCCcchhhhhhhHHHhHHHHH
Q 009156 238 QQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSS-LPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEE 316 (542)
Q Consensus 238 ~~L~~WL~ls~~~~vp~sLLl~s~a~~~~~~~~~~~~l~~~l~~-lp~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~e~ 316 (542)
.+|..|+++|++++||++||+|||+|++++.....+++..+|+. +|+.+......++.+++.+.++++.|++.|++||+
T Consensus 369 ~ql~~wldlsl~~~vps~lL~Lsr~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~e~ 448 (499)
T KOG1043|consen 369 EQLRVWLDLSLDKKVPSVLLLLSRTFSLGQNSKAPSSSSGKLQIAAPDDLEKLEKLKKEESELGAVDRKKKLELLREGEE 448 (499)
T ss_pred HHHHHHHhhhccccCchHHHHHhhhhhhhhcccCCchhhhHhhhhccccHHHhcccccccccccccchHHHHHhhhcccc
Confidence 99999999999999999999999999999887788888888885 99999999999998888888999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 009156 317 LIKEEEEEEEEEQAK 331 (542)
Q Consensus 317 ~i~~e~~~~~~~~~~ 331 (542)
.|.+|.+++.+....
T Consensus 449 ~~~~e~eee~~~~~~ 463 (499)
T KOG1043|consen 449 IISEEEEEEEKQYGR 463 (499)
T ss_pred ccchhhhcccccccc
Confidence 999999866554433
No 2
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=100.00 E-value=1.9e-68 Score=540.62 Aligned_cols=256 Identities=54% Similarity=0.915 Sum_probs=132.1
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHcCCCcchhh
Q 009156 1 MQHYWLGTKLLWADIRISSRLLLKLVNGKGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNMLPSTF 80 (542)
Q Consensus 1 ~~hY~~G~KlL~~d~Kis~~l~~k~~~G~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPf~E~lLPv~lklFPnmLPSTF 80 (542)
.+|||+|+|+||.|+|++.++.+|+..|+.|||||+++++||++|++|++||++|++|||+||++|+++++||+||||||
T Consensus 12 ~~~~~~G~kll~~d~k~~~~l~~~~~~g~~LtrrE~~~l~~~~~D~~kliP~~i~~~iPf~~~llp~~~~~fP~lLPstF 91 (268)
T PF07766_consen 12 YKHFWDGFKLLWADIKISRRLKKRVKQGHQLTRRERKQLRRTRRDLLKLIPFLIFLIIPFAEYLLPLLVKYFPNLLPSTF 91 (268)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcChHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHhhcCCccc
Q 009156 81 QDKMREEEALKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKLFNDELT 160 (542)
Q Consensus 81 ~~~~q~~~~lkk~l~~R~~~akfLq~t~~e~~~~~~~~~~~~~~~~~~~~~~f~~kvr~G~~ps~eeil~~aklF~d~l~ 160 (542)
|++.|+.+++++++++|.++++|||+++++++........ ....+|.+|++++++|.+||++||++++++|+|+++
T Consensus 92 ~~~~q~~~~~~~~~~~r~~~~~~Lq~~l~~~~~~~~~~~~----~~~~~~~~~~~kv~~~~~~s~~eil~~~~lF~d~~~ 167 (268)
T PF07766_consen 92 WSPSQREEFLKKRLKARKELAKFLQETLEEISKSSKNSNK----QERKKLSEFFKKVRSGGHPSNEEILKVAKLFKDELT 167 (268)
T ss_dssp ------------HHHHHHHHHHHHHHHHTT-----GGG-S----SHHHHHHHHHHHHHT-BTB-HHHHHHHHTTS-HHHH
T ss_pred cccchHHHHHHHHHHHhHhhHHHHHHHHHHhccccccchh----hhHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCCcc
Confidence 9999999999999999999999999999988765444221 123489999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHHhhHhHHHhccCCCCHHHHHHHHHhcCCCC-CCCHHHHHHH
Q 009156 161 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLG-LLSVEEMRQQ 239 (542)
Q Consensus 161 LdnLsr~~L~alcr~~~l~p~g~~~~LR~rLr~rl~~L~~DD~lI~~EGv~sLs~~EL~~AC~~RGi~~-~~s~e~lr~~ 239 (542)
|++|+|+||++||++||++||||++++|+||++|+.+|++||++|.+|||++||.+||+.||++|||++ ++|+++||.|
T Consensus 168 Ld~Lsr~~L~~L~r~~~l~~~~~~~~lr~rL~~~~~~l~~dD~~i~~eGv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~ 247 (268)
T PF07766_consen 168 LDNLSRPHLRALCRLLGLTPFGPSSLLRRRLRKRLRYLKQDDRLIKREGVDSLSEEELQDACYERGLRSTGLSEEELREW 247 (268)
T ss_dssp HHHS-HHHHHHHHHHTT----SSHHHHHHHHHHHHHHHHHHHHHHHHH-GGGS-HHHHHHHHHHTT---TT--HHHHHHH
T ss_pred cccCCHHHHHHHHHHhccCcCCchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhCCCcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 5899999999
Q ss_pred HHHHHhcccCCCCChhHHHhH
Q 009156 240 LRDWLDLSLNHSVPSSLLILS 260 (542)
Q Consensus 240 L~~WL~ls~~~~vp~sLLl~s 260 (542)
|.+||++|.+.++|+++||||
T Consensus 248 L~~WL~ls~~~~~p~~lLlL~ 268 (268)
T PF07766_consen 248 LKQWLQLSSNKKVPSSLLLLH 268 (268)
T ss_dssp HHHHHHHHHTS---HHHHHHH
T ss_pred HHHHHHHHccCCCCchhhccC
Confidence 999999999999999999986
No 3
>KOG4263 consensus Putative receptor CCR1 [Signal transduction mechanisms]
Probab=99.97 E-value=8.6e-32 Score=262.15 Aligned_cols=215 Identities=24% Similarity=0.416 Sum_probs=175.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhhhhHHHHHHHHcCCC-cch
Q 009156 4 YWLGTKLLWADIRISSRLLLKLVNG----KGLSRRERQQLTRTTADIFRLVPVAVFIIVPFMEFLLPVFLKLFPNM-LPS 78 (542)
Q Consensus 4 Y~~G~KlL~~d~Kis~~l~~k~~~G----~~LTRrE~~~L~Rt~~Dl~RLvPF~vfiiVPf~E~lLPv~lklFPnm-LPS 78 (542)
|..|.+++|+|+|.+.++..-++.| +.|+++|.+.|++++.|+.|+.|..+|+++||+.|+.+++++|||+. |..
T Consensus 64 f~~G~~~~faD~K~~~kikr~~~~~~~k~~~L~~~ElE~l~Qmp~d~~K~a~~~i~~~~P~~~Y~ff~li~~fPR~~Ltr 143 (299)
T KOG4263|consen 64 FLEGSRWCFADVKMYFKIKRAVATGQKKLTDLSVEELETLVQMPVDGPKMAIVTIFLPVPLSVYVFFFLIIFFPRLVLTR 143 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCccchhhCCHHHHHHHHhccccccceeeeeeccCcchHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988866 48999999999999999999999999999999999999999999996 799
Q ss_pred hhcccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhhhHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Q 009156 79 TFQDKMREEEA----LKRRLIARIEYAKFLQDTVKEMAKEVQNSRGGDIKKTAEDLDEFMNKVRTGAGVSNDEILAFAKL 154 (542)
Q Consensus 79 TF~~~~q~~~~----lkk~l~~R~~~akfLq~t~~e~~~~~~~~~~~~~~~~~~~~~~f~~kvr~G~~ps~eeil~~akl 154 (542)
|||+|+|+.+. .++++....++.++|++ +.+ .++ .....|.+++.++..|.|
T Consensus 144 HFWTpqQr~ef~~~y~~~rl~s~~~~~~~l~~---------p~~-td~--~k~~~l~dl~~~~~~gtH------------ 199 (299)
T KOG4263|consen 144 HFWTPQQRREFFQLYVTKRLISGEQLLKTLGN---------PSS-TDE--NKMKPLDDLDSSEMLGTH------------ 199 (299)
T ss_pred HhCChHhHhHHHHHHHHHHhcccHHHHHHhcC---------ccc-cCc--cccccHHHHHhHhhhhhH------------
Confidence 99999998764 44444444444444443 111 111 123345555555544443
Q ss_pred cCCccccCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHHHHHHHhhHhHHHhccCCCCHHHHHHHHHhcCCCCC-CCH
Q 009156 155 FNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGL-LSV 233 (542)
Q Consensus 155 F~d~l~LdnLsr~~L~alcr~~~l~p~g~~~~LR~rLr~rl~~L~~DD~lI~~EGv~sLs~~EL~~AC~~RGi~~~-~s~ 233 (542)
|.++.|.++.++|.||..|+.-|++.|++|.++||++||.+||+.|||-||++.. .+.
T Consensus 200 ---------------------~~l~~yp~p~~~rHRl~~h~~~ih~lD~al~~~gi~~lt~~~l~~~CYlRgln~~~~~~ 258 (299)
T KOG4263|consen 200 ---------------------MLLTSYPPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQELKSACYLRGLNSTHIGE 258 (299)
T ss_pred ---------------------hhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhhhccCCCCccCh
Confidence 5567788888999999999999999999999999999999999999999999975 899
Q ss_pred HHHHHHHHHHHhcccCCC-CChhHHHhHhhh
Q 009156 234 EEMRQQLRDWLDLSLNHS-VPSSLLILSRAF 263 (542)
Q Consensus 234 e~lr~~L~~WL~ls~~~~-vp~sLLl~s~a~ 263 (542)
++||.||++|+++|..-+ ---|||++++.+
T Consensus 259 ~~mr~wLr~wvkiS~Slk~~~~slllh~pvl 289 (299)
T KOG4263|consen 259 DRMRTWLREWVKISCSLKEAELSLLLHNPVL 289 (299)
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhhHH
Confidence 999999999999998633 345677777766
No 4
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=6.2e-11 Score=111.80 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=107.3
Q ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHhhhcCc-cchHHHHHHHHHhhhhcccccCcccccchh
Q 009156 365 EKHEQLCELSRALAVLASASSVSHEREEFLRLVNKEIELYNSMVEKDGK-VGEEEAKKAYRAAREETDQDAGEDVDEKVS 443 (542)
Q Consensus 365 ~~~e~~~~l~~a~~~l~~~~s~~~e~~e~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s 443 (542)
.+.+|+.++.+|-..+-..++=.-=|.+|-..++ - .+- ..+.++.+-.. +... .+.
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr-~----------lg~~~s~~ei~~l~~-----------~~d~-~~~ 70 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILR-S----------LGFNPSEAEINKLFE-----------EIDA-GNE 70 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHH-H----------cCCCCcHHHHHHHHH-----------hccC-CCC
Confidence 4688999999999999876544444555544433 1 111 11222222111 0111 233
Q ss_pred hHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHH
Q 009156 444 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVED 523 (542)
Q Consensus 444 ~rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~de 523 (542)
..-+..|..+|+...+..+. ++++.+||++||+|++|+|+..+|+.+++.+|+.+++++|+.|+..+|.|+||.|+|++
T Consensus 71 ~idf~~Fl~~ms~~~~~~~~-~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 71 TVDFPEFLTVMSVKLKRGDK-EEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred ccCHHHHHHHHHHHhccCCc-HHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 44599999999998876665 44899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 009156 524 IVKLASQT 531 (542)
Q Consensus 524 Fvkl~~~~ 531 (542)
|++++...
T Consensus 150 F~~~~~~~ 157 (160)
T COG5126 150 FKKLIKDS 157 (160)
T ss_pred HHHHHhcc
Confidence 99987643
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.24 E-value=1.7e-10 Score=107.29 Aligned_cols=90 Identities=26% Similarity=0.416 Sum_probs=79.9
Q ss_pred chhhHHHHHHHHHHHHHhhcccc---HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCC
Q 009156 441 KVSSALINRVDAMLQKLEKEIDD---VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREG 517 (542)
Q Consensus 441 k~s~rL~~rv~~Mi~~iek~id~---~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG 517 (542)
..+..-+..|..|+......... -.+.+.++|++||+|++|+||.+||+++|+.+|.+.+.++++.++...|.|+||
T Consensus 57 g~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg 136 (151)
T KOG0027|consen 57 GDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDG 136 (151)
T ss_pred CCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCC
Confidence 44455699999999988765443 245899999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhc
Q 009156 518 KILVEDIVKLASQ 530 (542)
Q Consensus 518 ~I~~deFvkl~~~ 530 (542)
.|+|++|+++|..
T Consensus 137 ~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 137 KVNFEEFVKMMSG 149 (151)
T ss_pred eEeHHHHHHHHhc
Confidence 9999999999864
No 6
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.16 E-value=1.1e-10 Score=106.67 Aligned_cols=86 Identities=24% Similarity=0.356 Sum_probs=77.9
Q ss_pred hhhHH-HHHHHHHHHHHhhcccc--HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCc
Q 009156 442 VSSAL-INRVDAMLQKLEKEIDD--VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGK 518 (542)
Q Consensus 442 ~s~rL-~~rv~~Mi~~iek~id~--~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~ 518 (542)
+.+|+ |..|.+|++++-++.++ ++ ++.+.+++||++++|+|...||+++|.++|+.+++++++.++.... |++|.
T Consensus 62 ~~~rl~FE~fLpm~q~vaknk~q~t~e-dfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~ 139 (152)
T KOG0030|consen 62 NVKRLDFEEFLPMYQQVAKNKDQGTYE-DFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGC 139 (152)
T ss_pred hhhhhhHHHHHHHHHHHHhccccCcHH-HHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCc
Confidence 34677 99999999999988774 45 6778999999999999999999999999999999999999999985 99999
Q ss_pred ccHHHHHHHHh
Q 009156 519 ILVEDIVKLAS 529 (542)
Q Consensus 519 I~~deFvkl~~ 529 (542)
|+|++|++.+.
T Consensus 140 i~YE~fVk~i~ 150 (152)
T KOG0030|consen 140 INYEAFVKHIM 150 (152)
T ss_pred CcHHHHHHHHh
Confidence 99999999764
No 7
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.12 E-value=1.2e-10 Score=99.91 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=60.5
Q ss_pred HHHHHHHhhCC-CCCCcccHHHHHHHHHh-cCCCCCH-HHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDR-DYDGKVTAEEVASAAMY-LKDTLDK-EGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDk-D~dG~Is~~EL~~aL~~-lG~~lte-eeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+..+|+.||+ +++|+|+.+||+.+|+. +|..++. +++++|+..+|.|+||.|+|+||+.+|..
T Consensus 9 ~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 9 TLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGE 75 (89)
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 57899999999 99999999999999999 9988888 99999999999999999999999999864
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.02 E-value=9.6e-10 Score=94.12 Aligned_cols=64 Identities=16% Similarity=0.301 Sum_probs=60.1
Q ss_pred HHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----cCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLD-RDYDG-KVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfD-kD~dG-~Is~~EL~~aL~~-----lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+.++|+.|| +||+| +|+.+||+.+|+. +|..+++++++++++.+|.|+||.|+|++|+.++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 5789999998 89999 5999999999999 899999999999999999999999999999998864
No 9
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.01 E-value=9.3e-10 Score=87.73 Aligned_cols=62 Identities=21% Similarity=0.487 Sum_probs=54.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHH----HHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEG----IQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteee----I~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
++.++|+.||+|++|+|+.+||..+++.+|...+... +..++..+|.|+||.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4678999999999999999999999999997766554 4555999999999999999999875
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.91 E-value=2.2e-09 Score=91.94 Aligned_cols=65 Identities=9% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHhhCC-CC-CCcccHHHHHHHHH---hcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 467 KIGDRWRLLDR-DY-DGKVTAEEVASAAM---YLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 467 ~i~~aF~lfDk-D~-dG~Is~~EL~~aL~---~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
.+...|+.||. || +|+|+.+||+.+|+ .+|.+++++++++++..+|.|+||.|+|++|+.++...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 46789999998 77 89999999999997 37999999999999999999999999999999988653
No 11
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.91 E-value=3.7e-09 Score=90.52 Aligned_cols=71 Identities=13% Similarity=0.296 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHhhC-CCCCCc-ccHHHHHHHHHh-cCC----CCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 461 IDDVDAKIGDRWRLLD-RDYDGK-VTAEEVASAAMY-LKD----TLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 461 id~~de~i~~aF~lfD-kD~dG~-Is~~EL~~aL~~-lG~----~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
++...+.+.++|++|| +|++|+ |+..||+.+|+. +|. .++++++++|+..+|.|++|.|+|++|+.++...
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3444557899999997 999994 999999999986 553 5688999999999999999999999999988643
No 12
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=4.3e-09 Score=97.93 Aligned_cols=70 Identities=24% Similarity=0.479 Sum_probs=65.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCCCCc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTE 535 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~d~~ 535 (542)
..+.++|+.||+|++|+|+..+|..+|+.+|..+++.++..++..+|.|+||.|++++|+.++.......
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~ 77 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEK 77 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccc
Confidence 4688999999999999999999999999999999999999999999999999999999999997654433
No 13
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=8.9e-09 Score=96.35 Aligned_cols=88 Identities=20% Similarity=0.378 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccH
Q 009156 442 VSSALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILV 521 (542)
Q Consensus 442 ~s~rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~ 521 (542)
+++.-|..|..+++....+.+. .+++..+|+.||-|++|+||..+|+.+++.||.+++++++.+||.++|.|+||.|+-
T Consensus 83 ~g~i~fe~f~~~mt~k~~e~dt-~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevne 161 (172)
T KOG0028|consen 83 SGKITFEDFRRVMTVKLGERDT-KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNE 161 (172)
T ss_pred CceechHHHHHHHHHHHhccCc-HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccH
Confidence 3455599999999988887774 458999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 009156 522 EDIVKLASQ 530 (542)
Q Consensus 522 deFvkl~~~ 530 (542)
++|+.+|..
T Consensus 162 eEF~~imk~ 170 (172)
T KOG0028|consen 162 EEFIRIMKK 170 (172)
T ss_pred HHHHHHHhc
Confidence 999998864
No 14
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.86 E-value=7.4e-09 Score=89.10 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=59.1
Q ss_pred HHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 466 AKIGDRWRLLDR-DY-DGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 466 e~i~~aF~lfDk-D~-dG~Is~~EL~~aL~~-----lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
..+..+|+.||. |+ +|+|+.+||+.+|+. +|..+++++++.++..+|.|+||.|+|++|+.++..
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468899999997 97 699999999999987 577889999999999999999999999999998753
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.82 E-value=1.3e-08 Score=87.90 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHHHHHHhhC-CCCCC-cccHHHHHHHHHh-c----CCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 467 KIGDRWRLLD-RDYDG-KVTAEEVASAAMY-L----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 467 ~i~~aF~lfD-kD~dG-~Is~~EL~~aL~~-l----G~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
.+.++|+.|| +||+| +||.+||+.+|+. + +...++.+|++|+..+|.|+||.|+|++|+.++..+
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4678899999 89999 5999999999977 3 344578899999999999999999999999998643
No 16
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=1.7e-07 Score=87.38 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHH
Q 009156 444 SALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVED 523 (542)
Q Consensus 444 ~rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~de 523 (542)
-..|..|..|++....-.+. ++.|..||++||.+++|+|..+.|+.+|+.+|+++++++|++|+...-.|..|.|+|..
T Consensus 80 PINft~FLTmfGekL~gtdp-e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~ 158 (171)
T KOG0031|consen 80 PINFTVFLTMFGEKLNGTDP-EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKA 158 (171)
T ss_pred CeeHHHHHHHHHHHhcCCCH-HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHH
Confidence 45699999999988776666 55899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q 009156 524 IVKLASQTE 532 (542)
Q Consensus 524 Fvkl~~~~~ 532 (542)
|+.++.++.
T Consensus 159 ~~~~ithG~ 167 (171)
T KOG0031|consen 159 FTYIITHGE 167 (171)
T ss_pred HHHHHHccc
Confidence 999998654
No 17
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.75 E-value=2.7e-08 Score=78.80 Aligned_cols=60 Identities=18% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 469 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 469 ~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
..+|..||+|++|.|+.+|+..+++.+|. +++++..++..+|.|++|.|+|++|+.++..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 46899999999999999999999999874 8899999999999999999999999988753
No 18
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.70 E-value=4.2e-08 Score=82.97 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCC--CCCCcccHHHHHHHHHh-cCCCC----CHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 466 AKIGDRWRLLDR--DYDGKVTAEEVASAAMY-LKDTL----DKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 466 e~i~~aF~lfDk--D~dG~Is~~EL~~aL~~-lG~~l----teeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
+.+..+|..||+ |++|+|+.++|..+++. +|..+ +++++..|+..+|.|++|.|+|++|+.++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 357889999999 89999999999999986 56544 58999999999999999999999999988643
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.69 E-value=5.9e-08 Score=83.71 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=58.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
..+..+|..||+|++|.|+.++++.+|+.+| ++++++..|+..+|.+++|.|+|++|+.++..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 3678999999999999999999999999976 78999999999999999999999999998753
No 20
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.58 E-value=1.3e-07 Score=72.69 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=48.9
Q ss_pred CCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 479 YDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG~~-lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
++|.|+.++|+.+|..+|.. ++++++..|+..+|.|+||.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999889999 99999999999999999999999999998853
No 21
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.57 E-value=1.9e-07 Score=80.17 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=57.1
Q ss_pred HHHHHHHh-hCCCCCC-cccHHHHHHHHHhc-----CCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 467 KIGDRWRL-LDRDYDG-KVTAEEVASAAMYL-----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 467 ~i~~aF~l-fDkD~dG-~Is~~EL~~aL~~l-----G~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
.+..+|+. +|+||+| +||.+||+.++... +...++.++++++..+|.|+||.|+|++|+.+|...
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 46789999 7898986 99999999999875 445678899999999999999999999999988643
No 22
>PTZ00183 centrin; Provisional
Probab=98.55 E-value=5.1e-07 Score=82.77 Aligned_cols=84 Identities=24% Similarity=0.380 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHH
Q 009156 446 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 525 (542)
Q Consensus 446 L~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFv 525 (542)
-+.+|..++......... ...+..+|+.||.+++|+|+..|+..++..+|.+++..++..++..+|.|++|.|++++|+
T Consensus 71 ~~~eF~~~~~~~~~~~~~-~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 71 DFEEFLDIMTKKLGERDP-REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149 (158)
T ss_pred eHHHHHHHHHHHhcCCCc-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 367777776654332222 3468899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 009156 526 KLASQ 530 (542)
Q Consensus 526 kl~~~ 530 (542)
.++..
T Consensus 150 ~~~~~ 154 (158)
T PTZ00183 150 RIMKK 154 (158)
T ss_pred HHHhc
Confidence 99865
No 23
>PF14658 EF-hand_9: EF-hand domain
Probab=98.52 E-value=2e-07 Score=75.61 Aligned_cols=60 Identities=13% Similarity=0.334 Sum_probs=57.1
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCC-CcccHHHHHHHHhc
Q 009156 471 RWRLLDRDYDGKVTAEEVASAAMYLKD-TLDKEGIQELIANLSKDRE-GKILVEDIVKLASQ 530 (542)
Q Consensus 471 aF~lfDkD~dG~Is~~EL~~aL~~lG~-~lteeeI~eLi~~lD~D~D-G~I~~deFvkl~~~ 530 (542)
+|.+||+++.|.|.+..|...|+.+|. .+++.+++.+.+.+|.++. |.|++++|+.+|..
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 799999999999999999999999998 8999999999999999887 99999999999864
No 24
>PTZ00184 calmodulin; Provisional
Probab=98.52 E-value=5.6e-07 Score=81.23 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHH
Q 009156 446 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 525 (542)
Q Consensus 446 L~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFv 525 (542)
-+..|..++........ ....+..+|+.||.+++|+|+.+++..++..+|..++.+++..++..+|.|++|.|+|++|+
T Consensus 65 ~~~ef~~~l~~~~~~~~-~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 65 DFPEFLTLMARKMKDTD-SEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
T ss_pred cHHHHHHHHHHhccCCc-HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 37788888776533222 23467899999999999999999999999999988999999999999999999999999999
Q ss_pred HHHh
Q 009156 526 KLAS 529 (542)
Q Consensus 526 kl~~ 529 (542)
.++.
T Consensus 144 ~~~~ 147 (149)
T PTZ00184 144 KMMM 147 (149)
T ss_pred HHHh
Confidence 8874
No 25
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.51 E-value=3.8e-07 Score=68.97 Aligned_cols=61 Identities=36% Similarity=0.631 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
+..+|..+|.+++|.|+..++..+++.+|..++.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999999999999998765
No 26
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.49 E-value=3.7e-07 Score=86.44 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=65.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCC-CCchhhc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE-DTETAET 539 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~-d~~~~e~ 539 (542)
+++.++|.+||+|++|.|+..+|..+++.+|..+++.++..|+..+|. +.|.|+|.+|+.+|.... ..++.|+
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 468899999999999999999999999999999999999999999998 899999999999997643 4444443
No 27
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=3e-07 Score=86.25 Aligned_cols=75 Identities=31% Similarity=0.460 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh-cCCCCchhhc
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS-QTEDTETAET 539 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~-~~~d~~~~e~ 539 (542)
.+++..+|..||.+++|+|.++||..+|+.+|..+..++|..|+...|.++.|.|+|++|..+|. .+...+|.||
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999975 3466667765
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.40 E-value=1.4e-06 Score=84.72 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCC--HHH----HHHHHHHHcCCCCCcc
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--KEG----IQELIANLSKDREGKI 519 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l-G~~lt--eee----I~eLi~~lD~D~DG~I 519 (542)
+..|...++-...... .++++.-||++||.+++|+|+.+||..++..+ |...+ ++. ++.++.++|.|+||+|
T Consensus 86 F~~Fv~~ls~f~~~~~-~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I 164 (187)
T KOG0034|consen 86 FEEFVRLLSVFSPKAS-KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI 164 (187)
T ss_pred HHHHHHHHhhhcCCcc-HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC
Confidence 6666666665544222 24589999999999999999999999999986 44455 444 4557788999999999
Q ss_pred cHHHHHHHHhcCC
Q 009156 520 LVEDIVKLASQTE 532 (542)
Q Consensus 520 ~~deFvkl~~~~~ 532 (542)
+|+||.+++....
T Consensus 165 sfeEf~~~v~~~P 177 (187)
T KOG0034|consen 165 SFEEFCKVVEKQP 177 (187)
T ss_pred cHHHHHHHHHcCc
Confidence 9999999997653
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.36 E-value=1.3e-06 Score=78.78 Aligned_cols=62 Identities=23% Similarity=0.398 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
...++.+|..||.|+||+||.+||..+. + ...+..+..++..+|.|+||.|+++||...+..
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR--L--DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 3468899999999999999999999876 3 345778899999999999999999999998843
No 30
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.27 E-value=2.1e-06 Score=73.31 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=56.2
Q ss_pred HHHHHHHhhCCC--CCCcccHHHHHHHHH-hcCCCCC----HHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRD--YDGKVTAEEVASAAM-YLKDTLD----KEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD--~dG~Is~~EL~~aL~-~lG~~lt----eeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+...|+.|+.+ ++|+|+.+||+.+|. .+|..++ +++++.++..+|.|+||.|+|++|+.++..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 466788899865 489999999999997 5677777 899999999999999999999999998864
No 31
>PTZ00183 centrin; Provisional
Probab=98.26 E-value=3.3e-06 Score=77.35 Aligned_cols=63 Identities=30% Similarity=0.468 Sum_probs=44.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
++..+|..+|.+++|+|+..|+..+++.+|..++...+..++..+|.|++|.|++++|+.++.
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 456677777777777777777777777776666666777777777777777777777766554
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.22 E-value=4.2e-06 Score=75.53 Aligned_cols=64 Identities=22% Similarity=0.444 Sum_probs=52.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+...|..+|.+++|.|+..++..++..+|..++.+.+..++..+|.|++|.|+|++|+.++..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 5667888888888888888888888888887777888888888888888888888888877653
No 33
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.98 E-value=1e-05 Score=74.57 Aligned_cols=70 Identities=16% Similarity=0.302 Sum_probs=61.3
Q ss_pred cccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCC--CCCcccHHHHHHHHhcC
Q 009156 461 IDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKD--REGKILVEDIVKLASQT 531 (542)
Q Consensus 461 id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D--~DG~I~~deFvkl~~~~ 531 (542)
.++. ++++++|.+||+.+||+|+...+..+|+.+|.+||+.+|.+.+.+.+.+ +-..|+|++|+-+...+
T Consensus 7 ~d~~-~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 7 PDQM-EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred cchH-HHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH
Confidence 3444 4789999999999999999999999999999999999999999998766 44789999999887654
No 34
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.97 E-value=3.1e-05 Score=76.25 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHH
Q 009156 446 LINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIV 525 (542)
Q Consensus 446 L~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFv 525 (542)
-+++|..+-..|. .-+..|+.||+|++|.|+..||+.+|..+|..++++-++-|+++.|.-++|.|.||+|+
T Consensus 112 ~f~EF~~Lw~~i~--------~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI 183 (221)
T KOG0037|consen 112 GFKEFKALWKYIN--------QWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFI 183 (221)
T ss_pred CHHHHHHHHHHHH--------HHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHH
Confidence 3555555554432 24678999999999999999999999999999999999999999997779999999999
Q ss_pred HHHh
Q 009156 526 KLAS 529 (542)
Q Consensus 526 kl~~ 529 (542)
..+.
T Consensus 184 ~ccv 187 (221)
T KOG0037|consen 184 QCCV 187 (221)
T ss_pred HHHH
Confidence 8753
No 35
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.88 E-value=3.6e-05 Score=75.22 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=65.5
Q ss_pred chhhHHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc----CC-------CCCHHHHHHHHH
Q 009156 441 KVSSALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL----KD-------TLDKEGIQELIA 509 (542)
Q Consensus 441 k~s~rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l----G~-------~lteeeI~eLi~ 509 (542)
+.+..-|..|..-++.... -.+++++..+|++||.||+|+||..|+-.+++.+ |. .-+++-+..+++
T Consensus 77 ~dg~i~F~Efi~als~~~r--Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~ 154 (193)
T KOG0044|consen 77 KDGTIDFLEFICALSLTSR--GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFS 154 (193)
T ss_pred CCCCcCHHHHHHHHHHHcC--CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHH
Confidence 3334445555444444433 3556788999999999999999999999998764 32 113566889999
Q ss_pred HHcCCCCCcccHHHHHHHHh
Q 009156 510 NLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 510 ~lD~D~DG~I~~deFvkl~~ 529 (542)
++|.|+||.|+++||+....
T Consensus 155 k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 155 KMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HcCCCCCCcccHHHHHHHhh
Confidence 99999999999999988764
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=97.81 E-value=4.2e-05 Score=86.65 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCC
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 532 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~ 532 (542)
.+..+|+.+|.|++|.|+.+|+..+|..+|...+++++..++..+|.|+||.|+++||..++....
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~ 245 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQQ 245 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcc
Confidence 378899999999999999999999999998888899999999999999999999999999887653
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=7.1e-05 Score=70.15 Aligned_cols=59 Identities=15% Similarity=0.317 Sum_probs=52.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
++.+||.++|.|+||+|..++|+..+..+|..+++++|+.|+.+. .|.|||--|+.++.
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfG 91 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFG 91 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHH
Confidence 467999999999999999999999999999999999999999875 36777777777764
No 38
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.68 E-value=6.5e-05 Score=73.13 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=56.6
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
+..+|+.||.|.||+|+..||+.+|.++|.+-|-=-+..||.+.|.|.||+|+|-+|+=+..
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 34799999999999999999999999999877777899999999999999999999986654
No 39
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.62 E-value=0.00014 Score=67.67 Aligned_cols=88 Identities=17% Similarity=0.270 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCCHHHH----HHHHHHHcCCCCCcc
Q 009156 445 ALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGI----QELIANLSKDREGKI 519 (542)
Q Consensus 445 rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l-G~~lteeeI----~eLi~~lD~D~DG~I 519 (542)
--++-|.-|.+-.... ...+-+..-||++||-|+||+|-.++|...++++ ...++++++ +.++.+.|.|+||++
T Consensus 88 lsfddFlDmfSV~sE~-APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl 166 (189)
T KOG0038|consen 88 LSFDDFLDMFSVFSEM-APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKL 166 (189)
T ss_pred ccHHHHHHHHHHHHhh-ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcc
Confidence 3377788887755432 2224456779999999999999999999999987 345787764 567889999999999
Q ss_pred cHHHHHHHHhcCCC
Q 009156 520 LVEDIVKLASQTED 533 (542)
Q Consensus 520 ~~deFvkl~~~~~d 533 (542)
+|.+|-.++.+..|
T Consensus 167 ~~~eFe~~i~raPD 180 (189)
T KOG0038|consen 167 SFAEFEHVILRAPD 180 (189)
T ss_pred cHHHHHHHHHhCcc
Confidence 99999999876544
No 40
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.60 E-value=7e-05 Score=51.25 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
+..+|+.||+|++|+|+.+|+..+|++|
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 4567777777777777777777777653
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.59 E-value=7.2e-05 Score=51.45 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-hcC
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAM-YLK 496 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~-~lG 496 (542)
++..+|+.||+|++|+|+.+||..+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 467899999999999999999999999 576
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=97.57 E-value=0.00017 Score=81.84 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 445 ALINRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 445 rL~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.-+++|..|+..+.. ... ++++.++|+.||+|++|+|+.+||..+|...
T Consensus 196 IdfdEFl~lL~~lg~-~~s-eEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 196 LSFSEFSDLIKAFGN-LVA-ANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred EcHHHHHHHHHHhcc-CCC-HHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 336666666665432 112 3356667777777777777777777666553
No 43
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.56 E-value=0.00035 Score=60.44 Aligned_cols=63 Identities=14% Similarity=0.248 Sum_probs=52.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh-----cCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMY-----LKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~-----lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+...|+.|- .+.|.++..||+..|.+ ++..-+++.|++++..+|.|+||.|+|.||+.+|..
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4667888887 45679999999999865 244456788999999999999999999999998864
No 44
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.49 E-value=0.00074 Score=66.11 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=72.0
Q ss_pred chhhHH-HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcc
Q 009156 441 KVSSAL-INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKI 519 (542)
Q Consensus 441 k~s~rL-~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I 519 (542)
-+++.+ ...|..++++.-...+. +.-..-+|+.||.|++|.|+..|+..++..+-..-.++.+...+.-+|.|+||.|
T Consensus 39 cP~G~~~~~~F~~i~~~~fp~gd~-~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 39 CPSGRLTLEEFREIYASFFPDGDA-SKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCCCccCHHHHHHHHHHHCCCCCH-HHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceE
Confidence 445555 66788898888653332 2234578999999999999999999998876555678889999999999999999
Q ss_pred cHHHHHHHHhcC
Q 009156 520 LVEDIVKLASQT 531 (542)
Q Consensus 520 ~~deFvkl~~~~ 531 (542)
+.+++++++..+
T Consensus 118 t~~Eml~iv~~i 129 (193)
T KOG0044|consen 118 TKEEMLKIVQAI 129 (193)
T ss_pred cHHHHHHHHHHH
Confidence 999999998643
No 45
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.29 E-value=0.00077 Score=72.61 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 464 VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 464 ~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
+...+..+|+.||.|++|+|+.+|+.. +..++..+|.|+||.|+++||...+..
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 355788999999999999999999831 678999999999999999999998764
No 46
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.24 E-value=0.00036 Score=47.75 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 503 GIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 503 eI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
+++++++.+|.|+||.|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 5789999999999999999999998864
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0011 Score=70.86 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=62.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCC
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 532 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~ 532 (542)
.++.+.|+.+|.++||.|.++|+...++.+|.+++++++..++..+|.|+++.|++++|-..+....
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p 148 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP 148 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC
Confidence 3678899999999999999999999999999999999999999999999999999999988766544
No 48
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.17 E-value=0.00099 Score=71.46 Aligned_cols=63 Identities=19% Similarity=0.405 Sum_probs=55.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhc----CCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYL----KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~l----G~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
+.-.|+.+|.|++|.||.+|++.+.+-+ ..++++++|-++...+|.|+||+|++.||++....
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 4468999999999999999999997655 44688999999999999999999999999987654
No 49
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.09 E-value=0.0021 Score=56.97 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=54.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.++...|...|. ++|+|+.++.+.+++.-| ++.+.+..|..-.|.|+||+++++||+-.|..
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 467889999986 689999999999999876 78999999999999999999999999776543
No 50
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.003 Score=67.55 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC-CCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 464 VDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDT-LDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 464 ~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~-lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
-+.+++..|+-||.+++|.|+.++|...+.+++++ ++.+-...+++..|.|.||.++|.+|.+-+..
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 35678999999999999999999999999999876 77788899999999999999999999887653
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.53 E-value=0.0026 Score=41.97 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=15.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHH
Q 009156 469 GDRWRLLDRDYDGKVTAEEVASA 491 (542)
Q Consensus 469 ~~aF~lfDkD~dG~Is~~EL~~a 491 (542)
..+|+.+|.|++|.||.+|+..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 35677777777777777777654
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=96.39 E-value=0.0097 Score=58.96 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLK-DTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG-~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
.+...|...|+|+.|+|+.+||..+|...+ .+++.+.|.-||.-+|.|++|+|++.||..+=
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw 120 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALW 120 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 567788999999999999999999998544 67899999999999999999999999998874
No 53
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=96.18 E-value=0.0084 Score=42.76 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 009156 211 ESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 244 (542)
Q Consensus 211 ~sLs~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL 244 (542)
.+|+..||+..|..||+++.++.++|.+.|.+|+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 5789999999999999999999999999999986
No 54
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.16 E-value=0.011 Score=64.93 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCC---CCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDT---LDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~---lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+.+.|...| |++|+|+..++..++...+.. ...+++++++...+.|.+|.|+|++|+.+...
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 5788999999 999999999999999987654 35899999999999999999999999997643
No 55
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.11 E-value=0.016 Score=69.65 Aligned_cols=84 Identities=15% Similarity=0.298 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhccccH------H---HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCC--H-----HHHHHHHHH
Q 009156 447 INRVDAMLQKLEKEIDDV------D---AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLD--K-----EGIQELIAN 510 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~------d---e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lt--e-----eeI~eLi~~ 510 (542)
..=..+|.++++++|..- + .++.-+|+.||++.+|.++-.+++.+|+.+|..+| + .+.+++++-
T Consensus 2225 ~qL~~rMqhnlEQqIqarn~~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~ 2304 (2399)
T KOG0040|consen 2225 DQLMMRMQHNLEQQIQARNHNGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDL 2304 (2399)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHh
Confidence 445567888888877632 2 23566999999999999999999999999998763 3 389999999
Q ss_pred HcCCCCCcccHHHHHHHHhc
Q 009156 511 LSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 511 lD~D~DG~I~~deFvkl~~~ 530 (542)
+|.+.+|.|+..+|+..|-.
T Consensus 2305 vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2305 VDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred cCCCCcCcccHHHHHHHHHh
Confidence 99999999999999998753
No 56
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.07 E-value=0.0057 Score=54.93 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHH
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 526 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvk 526 (542)
...+..-|..+|.|+||+++..||..+...+ ...+.=+..++...|.|+||.|++.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3457788999999999999999999775544 34555588899999999999999999975
No 57
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=96.03 E-value=0.0081 Score=39.62 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 504 IQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 504 I~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
|+.++..+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998864
No 58
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.019 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=45.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhc------CC-C---CCHHHHHHHHH----HHcCCCCCcccHHHHHHH
Q 009156 471 RWRLLDRDYDGKVTAEEVASAAMYL------KD-T---LDKEGIQELIA----NLSKDREGKILVEDIVKL 527 (542)
Q Consensus 471 aF~lfDkD~dG~Is~~EL~~aL~~l------G~-~---lteeeI~eLi~----~lD~D~DG~I~~deFvkl 527 (542)
-|++.|-|++|++..-||..+++-. |+ + +++.+++.||+ ..|.|+||.|+|.+|.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 6889999999999999999998754 33 1 35667666554 567899999999999874
No 59
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=95.59 E-value=0.025 Score=40.16 Aligned_cols=35 Identities=26% Similarity=0.337 Sum_probs=31.8
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 009156 210 VESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWL 244 (542)
Q Consensus 210 v~sLs~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL 244 (542)
+.+|+..||+..|.++|+++.++..+|.+.|.+|+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 35799999999999999998888999999999885
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.031 Score=58.28 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=50.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcC-CCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCC
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMYLK-DTLDKEGIQELIANLSKDREGKILVEDIVKLASQTE 532 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~lG-~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~ 532 (542)
..|+.=|.|++|..|.+|+...|.-=- .++..--|.+-+..+|.|+||+|+++||+.=|....
T Consensus 167 ~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 167 ERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred HHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 578899999999999999998865321 224455688899999999999999999998775543
No 61
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=94.74 E-value=0.08 Score=41.13 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 482 KVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 482 ~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
++|..|+...|+.+...+++.-+..++.+.|.+++|.++.+||.....
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 367889999999999999999999999999999999999999887653
No 62
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=94.74 E-value=0.042 Score=37.56 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 503 GIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 503 eI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
++..++..+|.|+||.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 63
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.028 Score=58.60 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=50.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHH
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 526 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvk 526 (542)
..|...|+|+||+++.+||++.+.--+....+.+...|+.+.|.|+||+++++|++.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 345567999999999999999887777778899999999999999999999999875
No 64
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.34 E-value=0.05 Score=34.19 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=17.8
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMY 494 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~ 494 (542)
+..+|+.+|.+++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 345666777777777777777666654
No 65
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=93.80 E-value=0.16 Score=38.69 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhhc-cccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 009156 447 INRVDAMLQKLEKE-IDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY 494 (542)
Q Consensus 447 ~~rv~~Mi~~iek~-id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~ 494 (542)
.+.|..++..+... +.. +++...|..+|.|++|+|+.+|+..+|..
T Consensus 7 ~~~~~~~l~~~g~~~~s~--~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 7 REEFRRALSKLGIKDLSE--EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSCH--HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 45677777555333 443 35889999999999999999999998864
No 66
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.27 E-value=0.11 Score=57.81 Aligned_cols=72 Identities=15% Similarity=0.217 Sum_probs=64.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCCCCchhh
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQTEDTETAE 538 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~d~~~~e 538 (542)
.....|..+|.|+.|+++++++.++|+..+..++++.+.+++.+.|.+.+|++.+.+|..++.....+.++.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~~~ 665 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCTEG 665 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCChHH
Confidence 345678999999999999999999999998889999999999999999999999999999998776666543
No 67
>KOG1043 consensus Ca2+-binding transmembrane protein LETM1/MRS7 [Function unknown]
Probab=93.20 E-value=1.6 Score=48.51 Aligned_cols=262 Identities=16% Similarity=0.109 Sum_probs=143.0
Q ss_pred HHHHhcccCCCCChhHHHhHhhhccCCCCChHHHHHHHhccCChhhhhhhcccccCCCcchhhhhhhHHHhHHHHHHHHH
Q 009156 241 RDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLSSLPDEVVDTVGVTALPSEDSISERRRKLEFLEMQEELIKE 320 (542)
Q Consensus 241 ~~WL~ls~~~~vp~sLLl~s~a~~~~~~~~~~~~l~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~e~~i~~ 320 (542)
.+|+.......+|.++..+.++.+.......+..+..+...+++-+-.++.+.....+...+.+..+. +....+
T Consensus 44 ~d~~~~~~~~s~~~s~~~~~~~~~~~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~lss~~a~~~------~~~~a~ 117 (499)
T KOG1043|consen 44 VDKLAWVKTESYKASLYSLLQAVNLISARGNASDLDSSVKVLRELVQQAAPLALKIKELLSSKHAKKT------EAFWAK 117 (499)
T ss_pred HHHHHHHhhhccchhhhhhhhhccccccccchhhhhhhHHHhHHHhhhccchhhhchhhccccchhhc------cccccc
Confidence 67888888888999999999999887655555556655555555433333322111110000000000 000111
Q ss_pred HHHHHHHHHHHHHHHhhhh-hhhccccCC-CCChHHHHHHhhhhhhhhHHHHHHHHHHHH---HHhh-cccchHHHHHHH
Q 009156 321 EEEEEEEEQAKMKEAVRSR-KDVALEEMT-DPTAKEAQEQAKAKTLEKHEQLCELSRALA---VLAS-ASSVSHEREEFL 394 (542)
Q Consensus 321 e~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~~~~l~~a~~---~l~~-~~s~~~e~~e~~ 394 (542)
+.. --..+..+...-. ....+=..+ ..+++-+-..+.....+ ..+...|.++|+ .|-- +..+.+.-.||
T Consensus 118 ~k~---s~~~~~~~~lqhy~~gtkll~~e~kisaklLlkll~g~~lt-rrE~~qL~rt~~d~frLvPfs~flivPf~El- 192 (499)
T KOG1043|consen 118 EKP---SLKTKFVKGLQHYVDGTKLLGKEIKISAKLLLKLLKGYELT-RRERGQLKRTCSDIFRLVPFSKFLIVPFMEL- 192 (499)
T ss_pred cCc---cHHHHHHHhhHHHhhhhhhhhhhhhhhHHHHHHHHccCeee-HHHhhhHHhhccchheeccceeeeeeehHHH-
Confidence 100 0000000000000 000000000 11333333445555554 677888999999 4443 56888999884
Q ss_pred HH---HHHHHHHHHHHhhhcCccchHHHHHHHHHhhhhcccccCcccccchhhHHHHHHHHHHHHHhh----ccccHHHH
Q 009156 395 RL---VNKEIELYNSMVEKDGKVGEEEAKKAYRAAREETDQDAGEDVDEKVSSALINRVDAMLQKLEK----EIDDVDAK 467 (542)
Q Consensus 395 ~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~rL~~rv~~Mi~~iek----~id~~de~ 467 (542)
.| +|....++-+..+.. +++..+. + ...+..+++++.|-+++.+|+..+.. ++.+.- .
T Consensus 193 ~Lp~~lKlfp~~lpstfq~~--------kk~~~k~-----~-k~~~~r~~~sk~Lq~tl~~~~~~~k~~~~~e~~qs~-~ 257 (499)
T KOG1043|consen 193 LLPIFLKLFPNDLPSTFQES--------KKEEEKL-----S-KKYVERSEASKFLQKTLQQMIDRIKTWSNLETSQSI-E 257 (499)
T ss_pred HhHHHHhhccccchhhHHHH--------HHHHHHh-----h-hhHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHH-H
Confidence 45 777777777776663 2222221 1 12345678999999999999988766 333210 2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcC-----CCCCHHHHHHHHHHHcCCCCCc--ccHHHHHHHHh
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYLK-----DTLDKEGIQELIANLSKDREGK--ILVEDIVKLAS 529 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~lG-----~~lteeeI~eLi~~lD~D~DG~--I~~deFvkl~~ 529 (542)
+..-|..+-. ..+..+.+++..+-+-.. ++++...+..|..-++.+..|. +.-......|.
T Consensus 258 fd~f~~kvr~-~~~~~S~eeii~~aklf~de~~LdnLsR~qL~al~k~m~l~~~Gt~~~lr~~lr~kik 325 (499)
T KOG1043|consen 258 FDRFLGKVRF-IGLGVSTEEIIAFAKLFSDEITLDNLSRPQLVALCKYMDLNSFGTDKLLRYQLRKKIK 325 (499)
T ss_pred HHHHHHHhcc-cCCCccHHHHHHHHHHhccchhhhccCHHHHHHHHHhhcccccCchHHHHHHHHHHHH
Confidence 2223333322 456678888888855443 4688899999999999999995 44444444443
No 68
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.79 E-value=0.23 Score=39.06 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhcc--ccHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 009156 447 INRVDAMLQKLEKEI--DDVDAKIGDRWRLLDRDYDGKVTAEEVASAA 492 (542)
Q Consensus 447 ~~rv~~Mi~~iek~i--d~~de~i~~aF~lfDkD~dG~Is~~EL~~aL 492 (542)
..++..++..+.... ...++.+...|+.+|+|++|.|+.+|+..++
T Consensus 19 ~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 19 KEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 667777777775443 2345567788999999999999999998764
No 69
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=92.77 E-value=0.13 Score=32.12 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 503 GIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 503 eI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
++..++..+|.|++|.|++++|..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678899999999999999999998753
No 70
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=91.66 E-value=0.1 Score=52.76 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-cCCCCCH--HHHHHHHHHHcCCCCCcccHHHHH
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMY-LKDTLDK--EGIQELIANLSKDREGKILVEDIV 525 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~-lG~~lte--eeI~eLi~~lD~D~DG~I~~deFv 525 (542)
-+++...|...|.+.||+||+.|+..-++. +.+++.+ ++-+..+...|.|+||.|.+++|.
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 346788999999999999999999987764 4344432 344557788999999999999994
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.39 E-value=0.22 Score=57.11 Aligned_cols=61 Identities=16% Similarity=0.245 Sum_probs=55.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
++...|+.+|+...|++|...-+.+|..-| ++...+-.|..--|+|+||+++.|+|+-.|.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 578899999999999999999999998766 7889999999999999999999999976543
No 72
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=90.96 E-value=0.47 Score=46.42 Aligned_cols=79 Identities=16% Similarity=0.160 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCc-ccHHHHHHHHHhcCCCCCH-HHHHHHHHHHcCCCCCcccHHHH
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGK-VTAEEVASAAMYLKDTLDK-EGIQELIANLSKDREGKILVEDI 524 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~-Is~~EL~~aL~~lG~~lte-eeI~eLi~~lD~D~DG~I~~deF 524 (542)
.++|..+. .....-+. ...++.||.+++|. |+..++.+++...-.+-+. +++.=.++-+|.|++|.|+-+++
T Consensus 53 ~eef~~i~---~~~~Np~~---~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel 126 (187)
T KOG0034|consen 53 KEEFLSIP---ELALNPLA---DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREEL 126 (187)
T ss_pred HHHHHHHH---HHhcCcHH---HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 55665555 22222333 35667888888888 9999999999876544444 48888999999999999999999
Q ss_pred HHHHhcC
Q 009156 525 VKLASQT 531 (542)
Q Consensus 525 vkl~~~~ 531 (542)
..++...
T Consensus 127 ~~iv~~~ 133 (187)
T KOG0034|consen 127 KQILRMM 133 (187)
T ss_pred HHHHHHH
Confidence 8887643
No 73
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=90.87 E-value=1.4 Score=53.31 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=52.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
+.|+-||+||.|.||..++..+|... .+.+..+++-+++-...|.+..++|++|++-.
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 57889999999999999999998765 46899999999999999999999999998754
No 74
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=90.02 E-value=0.75 Score=38.31 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=52.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh-cCC-CCCHHHHHHHHHHHcCC----CCCcccHHHHHHHHhcC
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMY-LKD-TLDKEGIQELIANLSKD----REGKILVEDIVKLASQT 531 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~-lG~-~lteeeI~eLi~~lD~D----~DG~I~~deFvkl~~~~ 531 (542)
+|...|..+-. +.+.||.+++...|+. .|. ..+.+++..+|..+..+ ..|.++++.|...+..-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36678999944 7899999999999975 565 57899999999998654 47999999999988543
No 75
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.63 E-value=0.83 Score=50.34 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=55.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
+-+.+-|+.+..|-+|+|+..--+..+.+- +++-.++..|+.-.|.|.||.++++||+..+-
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 346789999999999999999888888765 47778999999999999999999999998764
No 76
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=86.19 E-value=0.47 Score=51.62 Aligned_cols=64 Identities=16% Similarity=0.340 Sum_probs=42.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH---hc---CC----CCCHH-----HHHH-HHH-HHcCCCCCcccHHHHHHHHh
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAM---YL---KD----TLDKE-----GIQE-LIA-NLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~---~l---G~----~ltee-----eI~e-Li~-~lD~D~DG~I~~deFvkl~~ 529 (542)
.+.=||++||.||||-|+.+|+..+.. +. |. +++.. ++.. +.. -+..|++|++++++|.+.++
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 455699999999999999999988752 21 21 11111 1111 222 24568899999999998876
Q ss_pred c
Q 009156 530 Q 530 (542)
Q Consensus 530 ~ 530 (542)
.
T Consensus 314 ~ 314 (489)
T KOG2643|consen 314 N 314 (489)
T ss_pred H
Confidence 4
No 77
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=84.74 E-value=1.5 Score=31.13 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=29.6
Q ss_pred cCCCChHHHHHHHhhhCCCCCCccHHHHHHHHHHH
Q 009156 161 LDNISRPRLVNMCKYMGISPFGTDAYLRYMLRRRL 195 (542)
Q Consensus 161 LdnLsr~~L~alcr~~~l~p~g~~~~LR~rLr~rl 195 (542)
+++|+.++|...|+-+|+++-|+..-|.-||..++
T Consensus 1 l~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 45788999999999999999999888888887764
No 78
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=84.68 E-value=2.5 Score=36.35 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHHHH-HhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 446 LINRVDAMLQK-LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 446 L~~rv~~Mi~~-iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
-.+.+..++.+ +...+... +.+.+.|+.+|.|+||.|+.+|+..+|..+
T Consensus 27 ~~~ELk~ll~~elg~~ls~~-~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 27 TASEFQELLTQQLPHLLKDV-EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred CHHHHHHHHHHHhhhhccCH-HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 36777788877 53333331 467889999999999999999999887765
No 79
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=84.46 E-value=0.76 Score=50.04 Aligned_cols=75 Identities=11% Similarity=0.199 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-cCCCCCHHHHHHHHHHHcCCCCCcccHHHHH
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY-LKDTLDKEGIQELIANLSKDREGKILVEDIV 525 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~-lG~~lteeeI~eLi~~lD~D~DG~I~~deFv 525 (542)
++.|...+++ +.+++ .|...| ....+.|+..+++++... .|..+++.-++-++.-+|.|+||.++.+||+
T Consensus 378 f~~Ff~Fl~~----l~dfd----~Al~fy-~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl 448 (489)
T KOG2643|consen 378 FKAFFRFLNN----LNDFD----IALRFY-HMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFL 448 (489)
T ss_pred HHHHHHHHhh----hhHHH----HHHHHH-HHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHH
Confidence 5666666553 34444 333333 236789999999999886 6889998888999999999999999999999
Q ss_pred HHHhc
Q 009156 526 KLASQ 530 (542)
Q Consensus 526 kl~~~ 530 (542)
.+|..
T Consensus 449 ~Vmk~ 453 (489)
T KOG2643|consen 449 AVMKR 453 (489)
T ss_pred HHHHH
Confidence 99864
No 80
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=84.44 E-value=1.3 Score=48.50 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=46.9
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH----HHcCCCCCcccHHHHHHHHhcCCCCc
Q 009156 471 RWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIA----NLSKDREGKILVEDIVKLASQTEDTE 535 (542)
Q Consensus 471 aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~----~lD~D~DG~I~~deFvkl~~~~~d~~ 535 (542)
-|--+|+|++|.|+.++|..- -.+.++.--|+.|++ ..-.-.+|+++|++|+..+....+.+
T Consensus 283 kFweLD~Dhd~lidk~~L~ry---~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~ 348 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRY---GDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKD 348 (493)
T ss_pred HHhhhccccccccCHHHHHHH---hccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCC
Confidence 356679999999999998753 224467777899999 34456899999999999886554433
No 81
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=84.20 E-value=2.3 Score=50.18 Aligned_cols=83 Identities=12% Similarity=0.096 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhccccH-HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCH-----HHHHHHHHHHcCCCCCcccH
Q 009156 448 NRVDAMLQKLEKEIDDV-DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDK-----EGIQELIANLSKDREGKILV 521 (542)
Q Consensus 448 ~rv~~Mi~~iek~id~~-de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lte-----eeI~eLi~~lD~D~DG~I~~ 521 (542)
.-.+.++.+.-+.++++ ..++...|+.||+...|..+++++..+++.+|.+..+ .++..++...|.+..|.++|
T Consensus 728 ~~en~il~R~sk~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~ 807 (890)
T KOG0035|consen 728 ESENEILERDSKGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQL 807 (890)
T ss_pred cHHHHHHHhcccchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeH
Confidence 34455566666666655 5689999999999999999999999999999988775 24555777777778899999
Q ss_pred HHHHHHHhc
Q 009156 522 EDIVKLASQ 530 (542)
Q Consensus 522 deFvkl~~~ 530 (542)
.+|...+.+
T Consensus 808 ~e~~ddl~R 816 (890)
T KOG0035|consen 808 LEFEDDLER 816 (890)
T ss_pred HHHHhHhhh
Confidence 999998864
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=83.89 E-value=2.7 Score=32.75 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
++++..++..+--++++. -....|+..|++++|.+..+|+....+.+
T Consensus 4 f~Evk~lLk~~NI~~~~~--yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 4 FKEVKKLLKMMNIEMDDE--YARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHTT----HH--HHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcCHH--HHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 677777887776655543 45679999999999999999999887654
No 83
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=83.53 E-value=1.8 Score=30.61 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=29.3
Q ss_pred CCCChHHHHHHHhhhCCCCCCccHHHHHHHHHH
Q 009156 162 DNISRPRLVNMCKYMGISPFGTDAYLRYMLRRR 194 (542)
Q Consensus 162 dnLsr~~L~alcr~~~l~p~g~~~~LR~rLr~r 194 (542)
.+|+..+|.+.|+-.|+++.|+..-|..||..+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 468889999999999999999998888888765
No 84
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=83.19 E-value=1.3 Score=46.80 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.-|+-+|++|+.+.||++..++|..+++.. .++..=.+--++..++...||+|.+.+|-+++..
T Consensus 296 ~iiq~afk~f~v~eDg~~ge~~ls~ilq~~-lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 296 VIIQYAFKRFSVAEDGISGEHILSLILQVV-LGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHh-cCcceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 357789999999999999999999998863 2244456778899999999999999999998764
No 85
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=82.66 E-value=6.5 Score=43.17 Aligned_cols=64 Identities=16% Similarity=0.286 Sum_probs=47.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCC--------------------------------H-----------
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLD--------------------------------K----------- 501 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~l-G~~lt--------------------------------e----------- 501 (542)
.++.+.|+.+|.++.|+|+...-..+|..+ |.+++ +
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 357789999999999999998877776542 22221 0
Q ss_pred ---HHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 502 ---EGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 502 ---eeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
..++.|+..+|.|+.|.|+++||..+..
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~ 574 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWK 574 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHH
Confidence 1235578889999999999999987654
No 86
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=80.97 E-value=4.2 Score=34.73 Aligned_cols=47 Identities=26% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHHHHHH---hhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKL---EKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~i---ek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.+++..++.+. ..... ++++.+.|+.+|.|++|.|+.+|+...+..+
T Consensus 31 ~~EL~~~l~~~~~lg~k~t--~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 31 KKELKELIQKELTIGSKLQ--DAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 66777787642 22222 3468889999999999999999999888765
No 87
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=78.74 E-value=0.93 Score=37.42 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCC--C-----CcccHHHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDR--E-----GKILVEDIVK 526 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~--D-----G~I~~deFvk 526 (542)
.+.++|+.+ .++.++||..||++.| +.++++-+++.+..-. + |..+|..|++
T Consensus 7 qv~~aFr~l-A~~KpyVT~~dLr~~l-------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 7 QVEEAFRAL-AGGKPYVTEEDLRRSL-------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp HHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHH-HcCCCcccHHHHHHHc-------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 678999999 8889999999999874 3334466666554322 2 6788988875
No 88
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=78.45 E-value=5.6 Score=34.12 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhh-c--cccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEK-E--IDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek-~--id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
..++..++..... . ...-+..+...++.+|.|++|.|+.+|+..++..+
T Consensus 31 ~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 31 KGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 5666667655311 0 01123467789999999999999999999988765
No 89
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=78.25 E-value=3.1 Score=43.62 Aligned_cols=68 Identities=12% Similarity=0.242 Sum_probs=50.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHh-c----CCCCCHHHHH-----------HHHHHHcCCCCCcccHHHHHHHHhcCCC
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMY-L----KDTLDKEGIQ-----------ELIANLSKDREGKILVEDIVKLASQTED 533 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~-l----G~~lteeeI~-----------eLi~~lD~D~DG~I~~deFvkl~~~~~d 533 (542)
-.|.+.|-|+||+....||...+.. + ...-.+++.. .+++.+|+|.|..|++++|++--....-
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~kef 327 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDNKEF 327 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhhccc
Confidence 5788999999999999999998764 2 2222333333 3677899999999999999988765544
Q ss_pred Cchh
Q 009156 534 TETA 537 (542)
Q Consensus 534 ~~~~ 537 (542)
.+++
T Consensus 328 ~~p~ 331 (442)
T KOG3866|consen 328 NPPK 331 (442)
T ss_pred CCcc
Confidence 4444
No 90
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.77 E-value=3.1 Score=44.19 Aligned_cols=61 Identities=16% Similarity=0.274 Sum_probs=51.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
.++..|+.+|.+.||.++..||+.+- ++ -.+.=|..+|+..|...||.|+-+|++......
T Consensus 251 s~gWMFnklD~N~Dl~Ld~sEl~~I~--ld--knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 251 SLGWMFNKLDTNYDLLLDQSELRAIE--LD--KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhccccccccccCHHHhhhhh--cc--CchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 68999999999999999999998763 22 245568899999999999999999999877543
No 91
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=77.35 E-value=2.8 Score=30.74 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHhcCC
Q 009156 504 IQELIANLSKDREGKILVEDIVKLASQTE 532 (542)
Q Consensus 504 I~eLi~~lD~D~DG~I~~deFvkl~~~~~ 532 (542)
+..++..+|.|++|.|++++|..++....
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 56788899999999999999999987653
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.67 E-value=6.1 Score=45.97 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=45.9
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 471 RWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 471 aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
-|+.+ +-+.|+||.+.-+.++..-| ++..-+-+|..-.|.|+||++++.+|--.|
T Consensus 21 qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAm 75 (1118)
T KOG1029|consen 21 QFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAM 75 (1118)
T ss_pred HHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHH
Confidence 34444 46899999999999998877 677789999999999999999999995444
No 93
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=75.59 E-value=5.1 Score=40.91 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 527 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl 527 (542)
..+.++.-..+|.++||.+|.+||...+--+.....-.++..++.--|.++|-+++.+++.+-
T Consensus 280 kdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 280 KDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred HHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 334555556789999999999999999777777778889999999999999999999998764
No 94
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=73.74 E-value=8.1 Score=32.77 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhh-ccc--cHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEK-EID--DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek-~id--~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.+.+..++..... .+. .-++.+...|+.+|.|++|.|+.+++..++..+
T Consensus 29 ~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 29 KKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 5666666653222 111 113467889999999999999999999988765
No 95
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=70.73 E-value=11 Score=32.24 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH-----HhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 445 ALINRVDAMLQK-----LEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 445 rL~~rv~~Mi~~-----iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.-.+.+..++.. +....+ ++.+.+.++.+|.|++|.|+.+++..++..+
T Consensus 27 I~~~eL~~ll~~~~~~~lg~~~~--~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 27 LKKSELKELINNELSHFLEEIKE--QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred ECHHHHHHHHHHHhHHHhcCCCC--HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 346777777776 433222 2357788999999999999999998887654
No 96
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=69.78 E-value=6.3 Score=33.75 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhh-----ccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEK-----EIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek-----~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
..++..+++.... .++ +..+.+.|+.+|.|+||.|+.+|+..++..+
T Consensus 30 ~~Elk~ll~~e~~~~~~~~~~--~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 30 KTEFLSFMNTELASFTKNQKD--PGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhhhHhhcCCCC--HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4566666655421 122 2357788999999999999999999888765
No 97
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.44 E-value=29 Score=37.84 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=23.5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHh
Q 009156 469 GDRWRLLDRDYDGKVTAEEVASAAMY 494 (542)
Q Consensus 469 ~~aF~lfDkD~dG~Is~~EL~~aL~~ 494 (542)
...|+.+|.|++|.|+.+|+.+++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 56899999999999999999998764
No 98
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=69.00 E-value=17 Score=35.25 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=48.3
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCC--------------------------------------------------
Q 009156 469 GDRWRLLDRDYDGKVTAEEVASAAMYLKDT-------------------------------------------------- 498 (542)
Q Consensus 469 ~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~-------------------------------------------------- 498 (542)
+.-..-||+|+||.|.+-|--..++++|..
T Consensus 10 QqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~ 89 (174)
T PF05042_consen 10 QQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDT 89 (174)
T ss_pred hhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccccc
Confidence 334456899999999998887776666542
Q ss_pred ---CCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcCCC
Q 009156 499 ---LDKEGIQELIANLSKDREGKILVEDIVKLASQTED 533 (542)
Q Consensus 499 ---lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~~d 533 (542)
+..+..++|+++++..+.+.+++.|+..|+..+.+
T Consensus 90 eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 90 EGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred CCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 22445678888888777788999999888876544
No 99
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=67.72 E-value=5.8 Score=35.87 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 499 LDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 499 lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
.-..++..++..+|.|+||.|+.+|+..+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 345779999999999999999999998774
No 100
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=66.26 E-value=9 Score=29.54 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.+.+..++..+. .. ++.+...|+.+|.+++|.|+.+++..++..+
T Consensus 18 ~~el~~~l~~~g--~~--~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 18 GDEARPFLGKSG--LP--RSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHHHHHHcC--CC--HHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 455666665542 12 3357788999999999999999999887654
No 101
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=65.36 E-value=7.6 Score=33.09 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=27.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhcC
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYLK 496 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG 496 (542)
+.+...|+.+|.+++|.|+.+++..++..++
T Consensus 51 ~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 51 MAVDKIMKDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4677889999999999999999999887765
No 102
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=64.77 E-value=17 Score=30.21 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhccc---cHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEKEID---DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id---~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
...+..++.......- .-++.+...|..+|.+++|.|+.+++..++..+
T Consensus 29 ~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 29 KKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5566666654222110 113467788999999999999999999988765
No 103
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=64.04 E-value=9.6 Score=32.28 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=34.1
Q ss_pred HHHHHHHHHH-Hhhcc--ccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQK-LEKEI--DDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~-iek~i--d~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
...+..++.. +...+ ..-++.+...|+.+|.|++|.|+.+++..++..+
T Consensus 30 ~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 30 KKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4566666653 32111 1113367889999999999999999999988765
No 104
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=63.08 E-value=13 Score=43.34 Aligned_cols=66 Identities=20% Similarity=0.309 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
+.-+...|+..|++++|.++..+...+++.+...+....+..++.+.+...+|++...+|.+.-..
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 445777888888888888888888888888887788888888888888788888888888776543
No 105
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=61.27 E-value=12 Score=41.32 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------cCC-CCC-HHHHHHHHHHHcCCCCC
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMY-------LKD-TLD-KEGIQELIANLSKDREG 517 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~-------lG~-~lt-eeeI~eLi~~lD~D~DG 517 (542)
++.|.-.|-..+..-+. .-+.-.|+++|-+++|.++..||+..... +|. .++ ++-+.+|++-+.....|
T Consensus 334 ykdFv~FilA~e~k~t~--~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~ 411 (493)
T KOG2562|consen 334 YKDFVDFILAEEDKDTP--ASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDEN 411 (493)
T ss_pred HHHHHHHHHHhccCCCc--cchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCC
Confidence 77776666555432221 23557899999999999999999887443 342 223 45566777777766788
Q ss_pred cccHHHHHH
Q 009156 518 KILVEDIVK 526 (542)
Q Consensus 518 ~I~~deFvk 526 (542)
+|++.+|.+
T Consensus 412 kItLqDlk~ 420 (493)
T KOG2562|consen 412 KITLQDLKG 420 (493)
T ss_pred ceeHHHHhh
Confidence 999999976
No 106
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=60.75 E-value=13 Score=31.69 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
...|..++.... .. ++.+...|..+|.+++|+|+.+++..++..+
T Consensus 29 ~~el~~~l~~~~--~~--~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 29 GAQAKPILLKSG--LP--QTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHcC--CC--HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 555666655431 22 2357788999999999999999999887653
No 107
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=57.90 E-value=36 Score=30.70 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=46.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 009156 468 IGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKL 527 (542)
Q Consensus 468 i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl 527 (542)
+.-+|=+++.-++-..+..++..+|...|..++.+.+..+++.+. |+ +++|++.-
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHH
Confidence 445666778888889999999999999999999999999999984 44 78888754
No 108
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=57.76 E-value=8 Score=41.00 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKD-TLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~-~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
-+...|..+|+|++|.|...|.+-.=+.+.. .-+..=...++.-.|.|+|.+|+++|++..+..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 3567899999999999999987765433322 123334577889999999999999999998754
No 109
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=54.94 E-value=42 Score=31.68 Aligned_cols=62 Identities=8% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcC---CCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMYLK---DTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~lG---~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
.+|..|-+.+...++...+..+++..| ..++...++-++..+-..+...|+|++|...+..+
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 456666666667899999999999864 45899999999999866666789999999987643
No 110
>PF07766 LETM1: LETM1-like protein; InterPro: IPR011685 This is a group of mainly hypothetical eukaryotic proteins. Putative features found in LETM1, such as a transmembrane domain and a CK2 and PKC phosphorylation site [], are relatively conserved throughout the family. Deletion of LETM1 is thought to be involved in the development of Wolf-Hirschhorn syndrome in humans []. A member of this family, P91927 from SWISSPROT, is known to be expressed in the mitochondria of Drosophila melanogaster [], suggesting that this may be a group of mitochondrial proteins.; PDB: 3SKQ_A.
Probab=51.07 E-value=15 Score=37.81 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=28.2
Q ss_pred ccCCCChHHHHHHHhhhCCCCCC-ccHHHHHHHHHHHHHHH
Q 009156 160 TLDNISRPRLVNMCKYMGISPFG-TDAYLRYMLRRRLQEIK 199 (542)
Q Consensus 160 ~LdnLsr~~L~alcr~~~l~p~g-~~~~LR~rLr~rl~~L~ 199 (542)
.+++||...|...|..=|+.+.| +..-+|.+|..|+.-=.
T Consensus 216 Gv~~Ls~~EL~~Ac~~RGl~~~~~s~~~lr~~L~~WL~ls~ 256 (268)
T PF07766_consen 216 GVDSLSEEELQDACYERGLRSTGLSEEELREWLKQWLQLSS 256 (268)
T ss_dssp -GGGS-HHHHHHHHHHTT---TT--HHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHc
Confidence 67899999999999999998877 45678888888876543
No 111
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=46.95 E-value=55 Score=28.53 Aligned_cols=29 Identities=28% Similarity=0.182 Sum_probs=25.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
.+.+.|+.+|.|+||.|+..|+-..+-.+
T Consensus 49 ~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 49 AVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57789999999999999999998887654
No 112
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=46.14 E-value=23 Score=35.39 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHhcCCCC
Q 009156 503 GIQELIANLSKDREGKILVEDIVKLASQTEDT 534 (542)
Q Consensus 503 eI~eLi~~lD~D~DG~I~~deFvkl~~~~~d~ 534 (542)
....++..+|.|.||+|++.++..+|+..+..
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap 131 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAP 131 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCc
Confidence 45679999999999999999999999876543
No 113
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=45.78 E-value=24 Score=31.34 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=25.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 466 AKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 466 e~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
+.+...|.+-|.|++|+++.+|+..+|+-+
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 368899999999999999999999987643
No 114
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=45.09 E-value=32 Score=39.38 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=33.5
Q ss_pred ccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Q 009156 209 GVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLD 245 (542)
Q Consensus 209 Gv~sLs~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL~ 245 (542)
++..||..+|+..|...|+.+.+..++|.+.+..|++
T Consensus 548 ~l~kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~~ 584 (584)
T TIGR00578 548 TLGKLTVSVLKDFCRAYGLRSGSKKQELLDALTKHFK 584 (584)
T ss_pred ChhhccHHHHHHHHHHcCCCccccHHHHHHHHHHHhC
Confidence 3899999999999999999977778899999999984
No 115
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=43.37 E-value=1.4e+02 Score=25.96 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH-------hcCCCC----CHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAM-------YLKDTL----DKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~-------~lG~~l----teeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.++++-.|+.+ .|++|.++..-|...|+ .+|+.. .+.-+...+... .....|+.++|+..+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHh
Confidence 45888999999 88999999876666554 345532 466777788775 34567999999998864
No 116
>PF14658 EF-hand_9: EF-hand domain
Probab=41.44 E-value=63 Score=26.57 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCC-CcccHHHHHHHHHh
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYD-GKVTAEEVASAAMY 494 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~d-G~Is~~EL~~aL~~ 494 (542)
.+++...+...-.+-. .|.++...-+.+|++|. |.|+.+++..+|+.
T Consensus 17 v~~l~~~Lra~~~~~p-~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 17 VSDLITYLRAVTGRSP-EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHHHHHHHHHcCCCC-cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5556566665544222 24478888899999999 99999999999874
No 117
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=41.28 E-value=2.3e+02 Score=24.27 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHHHHHHHHhhHhHHHhccCCCCHHHH
Q 009156 140 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAEL 218 (542)
Q Consensus 140 G~~ps~eeil~~aklF~d~l~LdnLsr~~L~alcr-~~~l~p~g~~~~LR~rLr~rl~~L~~DD~lI~~EGv~sLs~~EL 218 (542)
..+++.+++.+.+ ++|+.+|..+++ +.|++|. ..+.+.|+.+=...|...| ++..++
T Consensus 19 ~~~~~~~~lA~~~----------~~S~~~l~r~f~~~~g~s~~--~~i~~~Rl~~a~~~L~~~~----------~~i~~i 76 (107)
T PRK10219 19 DQPLNIDVVAKKS----------GYSKWYLQRMFRTVTHQTLG--DYIRQRRLLLAAVELRTTE----------RPIFDI 76 (107)
T ss_pred CCCCCHHHHHHHH----------CCCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHHHHccC----------CCHHHH
Confidence 4567888777654 689999987775 6688773 2233334433333333322 344444
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcc
Q 009156 219 RQACRDRGLLGLLSVEEMRQQLRDWLDLS 247 (542)
Q Consensus 219 ~~AC~~RGi~~~~s~e~lr~~L~~WL~ls 247 (542)
. ..-|. .+...+....+.|..++
T Consensus 77 A---~~~Gf---~~~s~f~~~Fk~~~G~t 99 (107)
T PRK10219 77 A---MDLGY---VSQQTFSRVFRRQFDRT 99 (107)
T ss_pred H---HHHCC---CCHHHHHHHHHHHHCcC
Confidence 3 33355 34455555666665544
No 118
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=41.00 E-value=51 Score=24.95 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=24.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCC-C---CHHHHHHHHHH
Q 009156 210 VESLSEAELRQACRDRGLLGL-L---SVEEMRQQLRD 242 (542)
Q Consensus 210 v~sLs~~EL~~AC~~RGi~~~-~---s~e~lr~~L~~ 242 (542)
++.||..||+.-|.+-|++.+ + +..-+.+.|..
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~ 39 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRK 39 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHH
Confidence 678999999999999999853 3 33444455543
No 119
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.95 E-value=19 Score=38.94 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHH-HHcCCCCCcccHHHHHH
Q 009156 465 DAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIA-NLSKDREGKILVEDIVK 526 (542)
Q Consensus 465 de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~-~lD~D~DG~I~~deFvk 526 (542)
.+.+++.|+.+|+.++|+|+..=++.+|..+...+++.....++. .+|..+-|.|-.++|+.
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 457889999999999999999999999998875666655555444 46666667776666654
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.76 E-value=15 Score=43.87 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=53.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+.+.|...|.+.+|+|+..+....++.-| ++...+..+..-.|.+++|.+++++|+-.+..
T Consensus 284 ~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 284 KYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 345688999999999999999999998854 78889999999999999999999988766543
No 121
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=36.01 E-value=3.2e+02 Score=24.47 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHHHHHHHHhhHhHHHhccCCCCHHHH
Q 009156 140 GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAEL 218 (542)
Q Consensus 140 G~~ps~eeil~~aklF~d~l~LdnLsr~~L~alcr-~~~l~p~g~~~~LR~rLr~rl~~L~~DD~lI~~EGv~sLs~~EL 218 (542)
..+++.+++.+.. ++|+.+|..+.+ .+|++|. ..+.+.|+..-...|.. .+++..|+
T Consensus 23 ~~~~sl~~lA~~~----------g~S~~~l~r~Fk~~~G~s~~--~~l~~~Rl~~A~~~L~~----------t~~~i~eI 80 (127)
T PRK11511 23 ESPLSLEKVSERS----------GYSKWHLQRMFKKETGHSLG--QYIRSRKMTEIAQKLKE----------SNEPILYL 80 (127)
T ss_pred CCCCCHHHHHHHH----------CcCHHHHHHHHHHHHCcCHH--HHHHHHHHHHHHHHHHc----------CCCCHHHH
Confidence 4567888777543 689999998886 6798883 22333444333333321 13555555
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcc
Q 009156 219 RQACRDRGLLGLLSVEEMRQQLRDWLDLS 247 (542)
Q Consensus 219 ~~AC~~RGi~~~~s~e~lr~~L~~WL~ls 247 (542)
...| |. .++..+....++|..++
T Consensus 81 A~~~---Gf---~s~s~F~r~Fkk~~G~t 103 (127)
T PRK11511 81 AERY---GF---ESQQTLTRTFKNYFDVP 103 (127)
T ss_pred HHHh---CC---CCHHHHHHHHHHHHCcC
Confidence 5555 44 45667777777777765
No 122
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=35.67 E-value=71 Score=34.19 Aligned_cols=62 Identities=16% Similarity=0.115 Sum_probs=50.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhc-CCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYL-KDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~l-G~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
.+...|.+||.+++|.+.-.|....+.-+ |-..+.+-|+--++.++.+-||.+.-.+|--++
T Consensus 260 ~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~il 322 (412)
T KOG4666|consen 260 KLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLIL 322 (412)
T ss_pred hhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHH
Confidence 56788999999999999988877776654 666788888889999999999998876665444
No 123
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.15 E-value=86 Score=23.54 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 485 AEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 485 ~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
.+|+..+|..+| ++..++...+..+.. ...++.++.++..
T Consensus 3 ~~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~a 42 (47)
T PF07499_consen 3 LEDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQA 42 (47)
T ss_dssp HHHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHH
Confidence 367888999998 689999999999864 4447789988765
No 124
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=34.47 E-value=84 Score=35.42 Aligned_cols=72 Identities=8% Similarity=0.171 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCC-cccHHHH
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREG-KILVEDI 524 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG-~I~~deF 524 (542)
+..|+++++.+.. +.-..+|+..|+.++|+||+=++..+|-....++....|...+...--.++| ++++..|
T Consensus 166 y~~f~Q~lh~~~~------E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf 238 (694)
T KOG0751|consen 166 YAEFTQFLHEFQL------EHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYF 238 (694)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHH
Confidence 7888888886643 2345799999999999999999999998877666666666655544322222 4555444
No 125
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=33.05 E-value=46 Score=37.34 Aligned_cols=45 Identities=27% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhc
Q 009156 447 INRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYL 495 (542)
Q Consensus 447 ~~rv~~Mi~~iek~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~l 495 (542)
+.+|+..=.-++. -|.....+|+.||+.++|.+|.+++..++...
T Consensus 93 f~eF~afe~~lC~----pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 93 FQEFRAFESVLCA----PDALFEVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHHHhhccC----chHHHHHHHHHhcccCCCceehHHHHHHHhcc
Confidence 6666655443333 14566789999999999999999999998765
No 126
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=32.82 E-value=99 Score=27.81 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=44.7
Q ss_pred HhhCCCCCCcccHHHHHHHHHhc----------CCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHhcC
Q 009156 473 RLLDRDYDGKVTAEEVASAAMYL----------KDTLDKEGIQELIANLSKDREGKILVEDIVKLASQT 531 (542)
Q Consensus 473 ~lfDkD~dG~Is~~EL~~aL~~l----------G~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~~~ 531 (542)
++||.+.+-+||-+++...++.- |+.+|..-+-+||-+...++...++.+=...++.-.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~y 78 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFY 78 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 57899999999999999988752 666777788888888776777777766555555443
No 127
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=32.63 E-value=40 Score=21.58 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=10.6
Q ss_pred cCCCCCcccHHHHHHH
Q 009156 512 SKDREGKILVEDIVKL 527 (542)
Q Consensus 512 D~D~DG~I~~deFvkl 527 (542)
|.|+||.|+--+|.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677888877776544
No 128
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=32.34 E-value=54 Score=24.32 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHhcCCCCC--CCHHHHHHHH
Q 009156 211 ESLSEAELRQACRDRGLLGL--LSVEEMRQQL 240 (542)
Q Consensus 211 ~sLs~~EL~~AC~~RGi~~~--~s~e~lr~~L 240 (542)
.++|..||+..|.+.||.+. +..++|...+
T Consensus 3 ~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~I 34 (43)
T PF07498_consen 3 KSMTLSELREIAKELGIEGYSKMRKQELIFAI 34 (43)
T ss_dssp HCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHH
Confidence 47899999999999999753 6777776554
No 129
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=32.04 E-value=1.1e+02 Score=27.36 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhh-----ccccHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCccc
Q 009156 446 LINRVDAMLQKLEK-----EIDDVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKIL 520 (542)
Q Consensus 446 L~~rv~~Mi~~iek-----~id~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~ 520 (542)
..+.+.+++++... ..+++...+..+|..- ....+. +.-+.+++..++..++.+|-..+..-++.-.+|.|+
T Consensus 11 ~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~-~~~~~~--~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~ 87 (117)
T PF08349_consen 11 IYRELGRLVANAGKRPLEEVFEEYEELLMEALSKP-PTRGSH--INVLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIP 87 (117)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcC-CCchhH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCcc
Confidence 35566666666433 2334444555555432 222222 344777777788889999999998888888999999
Q ss_pred HHHHHHHHhc
Q 009156 521 VEDIVKLASQ 530 (542)
Q Consensus 521 ~deFvkl~~~ 530 (542)
+...+.++..
T Consensus 88 l~~~l~~L~~ 97 (117)
T PF08349_consen 88 LSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHH
Confidence 9988887754
No 130
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=31.88 E-value=58 Score=27.84 Aligned_cols=51 Identities=27% Similarity=0.223 Sum_probs=29.3
Q ss_pred CCCcccHHHHHHHHHhcC--CCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 479 YDGKVTAEEVASAAMYLK--DTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG--~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
.||.|+.+|...+-..+. ..++.++...++..+....+...++.+|.+.+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 366777766665543322 135666666666665554445566666666554
No 131
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.96 E-value=1.7e+02 Score=26.47 Aligned_cols=53 Identities=8% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHH
Q 009156 469 GDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVK 526 (542)
Q Consensus 469 ~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvk 526 (542)
.-+|-+.--.|+..||.++|..++...|..+....+.-+++.+.- .++++++.
T Consensus 6 vaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 6 VAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 344555555677789999999999999999999999999999852 67888876
No 132
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=30.16 E-value=55 Score=31.22 Aligned_cols=65 Identities=11% Similarity=0.089 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCC-HHHHHHHHHHHcCCCCCcccHHHHHHHHhc
Q 009156 463 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLD-KEGIQELIANLSKDREGKILVEDIVKLASQ 530 (542)
Q Consensus 463 ~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lt-eeeI~eLi~~lD~D~DG~I~~deFvkl~~~ 530 (542)
.+.++|-++ |-.||+|.+|.+++-.++..+.+..+ +=++.--++-.|-|+|+.|--++..+.+..
T Consensus 71 pfk~ri~e~---FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~ 136 (189)
T KOG0038|consen 71 PFKRRICEV---FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTS 136 (189)
T ss_pred hHHHHHHHH---hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHH
Confidence 345566655 55899999999999998877655433 334555677789999999999999887754
No 133
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=27.66 E-value=1.1e+02 Score=25.20 Aligned_cols=33 Identities=6% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009156 479 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANL 511 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~l 511 (542)
.+-.|+.+-++..++.+|.++++.+|.++...+
T Consensus 28 ~NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 28 ENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355899999999999999999999999998875
No 134
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.55 E-value=1.1e+02 Score=25.50 Aligned_cols=34 Identities=6% Similarity=0.138 Sum_probs=30.1
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHc
Q 009156 479 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANLS 512 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD 512 (542)
.+-.|+.+-++..+..+|.++++.+|.+++..+-
T Consensus 35 ~NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 35 DNPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred hCCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4568999999999999999999999999988763
No 135
>PRK12768 CysZ-like protein; Reviewed
Probab=26.39 E-value=1.1e+02 Score=31.27 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHhhhhh--hhhHHHHHhhhhhhhHHHHHHH
Q 009156 32 SRRERQQLTRTTADIFR--LVPVAVFIIVPFMEFLLPVFLK 70 (542)
Q Consensus 32 TRrE~~~L~Rt~~Dl~R--LvPF~vfiiVPf~E~lLPv~lk 70 (542)
+++|++.+.+..+=... =++..++..||+.+++.|++.-
T Consensus 177 ~~~e~r~~l~~~r~~~~~fG~~~all~~IP~vNL~~Pv~aa 217 (240)
T PRK12768 177 SEAEAKAFRRKHATTVFLAGLVIAAFVAIPIVNLLTPLFAA 217 (240)
T ss_pred CHHHHHHHHHhcccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99998887766553333 2677788899999999998763
No 136
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=26.17 E-value=46 Score=30.36 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 498 TLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 498 ~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
.+++++.+.+..++-.|..|.+.|-||+.-..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 47999999999999999999999999988654
No 137
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=26.06 E-value=61 Score=34.87 Aligned_cols=65 Identities=12% Similarity=0.195 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHhhCCCCCCcccHHHHHHHHHhcCC---CCCHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 009156 463 DVDAKIGDRWRLLDRDYDGKVTAEEVASAAMYLKD---TLDKEGIQELIANLSKDREGKILVEDIVKL 527 (542)
Q Consensus 463 ~~de~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~---~lteeeI~eLi~~lD~D~DG~I~~deFvkl 527 (542)
.+-.++.+.|+.+-.++++......+..+-..+.. ++=.+++--||..+|.|.||.++-.|+-.+
T Consensus 208 ~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I 275 (434)
T KOG3555|consen 208 RLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAI 275 (434)
T ss_pred HHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhh
Confidence 34447788999998888888888777777555433 244689999999999999999998876544
No 138
>PRK00523 hypothetical protein; Provisional
Probab=25.81 E-value=1.2e+02 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009156 479 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANL 511 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~l 511 (542)
.+-.|+.+-++..++.+|.++++.+|.++....
T Consensus 36 ~NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 36 ENPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred HCcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 356899999999999999999999999999876
No 139
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=24.47 E-value=2.6e+02 Score=25.09 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=44.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 470 DRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 470 ~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
-+|-++.-.|+..||.+++..++...|..+....+.-+++.+.- .++++++.-.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 44555556678899999999999999999999999999999852 6788887754
No 140
>PHA02325 hypothetical protein
Probab=24.29 E-value=24 Score=28.83 Aligned_cols=11 Identities=55% Similarity=0.860 Sum_probs=6.2
Q ss_pred cccchhhHHHH
Q 009156 2 QHYWLGTKLLW 12 (542)
Q Consensus 2 ~hY~~G~KlL~ 12 (542)
+|||.||--.+
T Consensus 17 qhYWsgTgk~g 27 (72)
T PHA02325 17 QHYWSGTGKKG 27 (72)
T ss_pred eeeeccCCCcC
Confidence 56776664333
No 141
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=24.07 E-value=2.4e+02 Score=25.45 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=41.2
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 009156 472 WRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLA 528 (542)
Q Consensus 472 F~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~ 528 (542)
+-+|+.-+. .||.+.|..++...|..+.+..+..++..++ | +|+++.+.-.
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~~~ 57 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIKNA 57 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHHHh
Confidence 334444333 9999999999999999999999999999996 3 5899987654
No 142
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=23.60 E-value=1.3e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 009156 210 VESLSEAELRQACRDRGLLGLLSVEEMRQQLR 241 (542)
Q Consensus 210 v~sLs~~EL~~AC~~RGi~~~~s~e~lr~~L~ 241 (542)
+-+||..++...|..|||....+.+++...|.
T Consensus 43 lag~s~~eF~~~L~~~gI~~~~~~eel~~dle 74 (76)
T PF03683_consen 43 LAGMSRWEFLELLKERGIPINYDEEELEEDLE 74 (76)
T ss_pred HhCCCHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 56789999999999999995588888887765
No 143
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=23.16 E-value=79 Score=36.28 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCC----CHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTL----DKEGIQELIANLSKDREGKILVEDIVKL 527 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~l----teeeI~eLi~~lD~D~DG~I~~deFvkl 527 (542)
.+...|..||.|+||-.+.+|+..++...+..+ +..+... .+..|.+++.-|+..
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~ 374 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQ 374 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHH
Confidence 677899999999999999999999999876543 1111111 135788998888653
No 144
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=22.37 E-value=1.3e+02 Score=27.67 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhhHhHHHhccCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCCCh
Q 009156 189 YMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPS 254 (542)
Q Consensus 189 ~rLr~rl~~L~~DD~lI~~EGv~sLs~~EL~~AC~~RGi~~~~s~e~lr~~L~~WL~ls~~~~vp~ 254 (542)
.||..-+..-.=|+.++....-+.|+..|...+-.+|=+....+...+.....+||++..-..++.
T Consensus 8 srLSYfLw~s~PD~~L~~aA~~g~L~~~~~l~~q~~RML~dpr~~~~~~~F~~qWL~l~~~~~~~~ 73 (128)
T PF07631_consen 8 SRLSYFLWGSPPDAELLDAAAAGELRTPEQLRAQAERMLADPRARRFVERFFRQWLDLDRLDSIVK 73 (128)
T ss_pred HHHHHHHhcCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHcCccHHHHHHHHHHHHhCCCcccccCC
Confidence 444444544555677766655557777777777777766666677889999999999986555543
No 145
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=21.79 E-value=38 Score=33.77 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHhhCC-CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Q 009156 471 RWRLLDR-DYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDIVKLAS 529 (542)
Q Consensus 471 aF~lfDk-D~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deFvkl~~ 529 (542)
-|..+|. -.||++|-.||.-+-.-+ .+-+.=+...+...|.|+||.|.+++|-+...
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4556664 469999999988542111 12344567789999999999999999987654
No 146
>PRK15340 transcriptional regulator InvF; Provisional
Probab=21.66 E-value=2.7e+02 Score=28.05 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=35.3
Q ss_pred HHHHHHHHHHh----------cC-CCCCCHHHHHHHHhhcCCccccCCCChHHHHHHHh-hhCCCCCCccHHHHHHHHHH
Q 009156 127 AEDLDEFMNKV----------RT-GAGVSNDEILAFAKLFNDELTLDNISRPRLVNMCK-YMGISPFGTDAYLRYMLRRR 194 (542)
Q Consensus 127 ~~~~~~f~~kv----------r~-G~~ps~eeil~~aklF~d~l~LdnLsr~~L~alcr-~~~l~p~g~~~~LR~rLr~r 194 (542)
.+.+..+++++ .. ....+.+++.+.. ++|+.|+..+|+ ++|.+|. ..+.++|+...
T Consensus 99 ~~~~~~~~r~~e~y~l~~~Ll~~~~~~~sleeLA~~~----------gvS~r~f~RlFk~~~G~tpk--~yl~~~Rl~~a 166 (216)
T PRK15340 99 FNKVLALLRKSESYWLVGYLLAQSTSGNTMRMLGEDY----------GVSYTHFRRLCSRALGGKAK--SELRNWRMAQS 166 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccCCCCHHHHHHHH----------CcCHHHHHHHHHHHHCcCHH--HHHHHHHHHHH
Confidence 34555566555 32 3455666665433 689999999996 7898883 23444555443
Q ss_pred HH
Q 009156 195 LQ 196 (542)
Q Consensus 195 l~ 196 (542)
+.
T Consensus 167 ll 168 (216)
T PRK15340 167 LL 168 (216)
T ss_pred HH
Confidence 33
No 147
>PRK15066 inner membrane transport permease; Provisional
Probab=21.33 E-value=49 Score=33.18 Aligned_cols=18 Identities=6% Similarity=0.172 Sum_probs=13.9
Q ss_pred HHHHHHcCCCcchhhccc
Q 009156 66 PVFLKLFPNMLPSTFQDK 83 (542)
Q Consensus 66 Pv~lklFPnmLPSTF~~~ 83 (542)
|...+++|+++|.++-..
T Consensus 58 ~y~~fl~pGll~~~~~~~ 75 (257)
T PRK15066 58 SYMQFIVPGLIMMSVITN 75 (257)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 677888999888887643
No 148
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=21.00 E-value=1.5e+02 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=30.9
Q ss_pred HhhCCCCCCcccHHHHHHHHHhc----------CCCCCHHHHHHHHHHHc
Q 009156 473 RLLDRDYDGKVTAEEVASAAMYL----------KDTLDKEGIQELIANLS 512 (542)
Q Consensus 473 ~lfDkD~dG~Is~~EL~~aL~~l----------G~~lteeeI~eLi~~lD 512 (542)
++||...+.+||.+++..+++.- |+.+|..-+-+++.+..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e 59 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEE 59 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHH
Confidence 57899999999999999998752 55666666677766544
No 149
>PRK01844 hypothetical protein; Provisional
Probab=20.56 E-value=1.7e+02 Score=24.62 Aligned_cols=33 Identities=6% Similarity=0.206 Sum_probs=29.8
Q ss_pred CCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 009156 479 YDGKVTAEEVASAAMYLKDTLDKEGIQELIANL 511 (542)
Q Consensus 479 ~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~l 511 (542)
.+-.|+.+-++..+..+|.++++.+|.++....
T Consensus 35 ~NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 35 KNPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred HCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 355899999999999999999999999999876
No 150
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=20.53 E-value=98 Score=35.84 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHHHHcCCCCCcccHHHH
Q 009156 467 KIGDRWRLLDRDYDGKVTAEEVASAAMYLKDTLDKEGIQELIANLSKDREGKILVEDI 524 (542)
Q Consensus 467 ~i~~aF~lfDkD~dG~Is~~EL~~aL~~lG~~lteeeI~eLi~~lD~D~DG~I~~deF 524 (542)
-+...|+.+|.+++|.++..++.+.|..+....--+.+.=++.-+|.++| ..+.++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 35678999999999999999999999888665666778888888888888 7776665
Done!