BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009157
(542 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 95/205 (46%), Gaps = 41/205 (20%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 32 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 85
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 431
GG + +RW KGVN+F++ +L+PIH VHWSLV+I D +
Sbjct: 86 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVI------DLRKKCLK 129
Query: 432 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPV 489
+LDS+ K H I + +L++E + SDL + E W H + + +
Sbjct: 130 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----I 176
Query: 490 PQQKNDYDCGLFVLFFMERFMEEAP 514
PQQ N DCG+F + + + P
Sbjct: 177 PQQLNGSDCGMFTCKYADYISRDKP 201
>pdb|2IO0|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-2
pdb|2IO1|A Chain A, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|C Chain C, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO1|E Chain E, Crystal Structure Of Human Senp2 In Complex With Presumo-3
pdb|2IO2|A Chain A, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
pdb|2IO3|A Chain A, Crystal Structure Of Human Senp2 In Complex With Rangap1-
Sumo-2
Length = 232
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 95/205 (46%), Gaps = 41/205 (20%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYL----QLQASPTNRAIRDCHFFNTYFYSKLKE 371
+ I DI L +L ++NFY+ L + Q P H F+T+FY KLK
Sbjct: 38 LRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQGYPA------LHVFSTFFYPKLKS 91
Query: 372 AVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIIL 431
GG + +RW KGVN+F++ +L+PIH VHWSLV+I + K +
Sbjct: 92 -----GG-----YQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLK 135
Query: 432 HLDSL--KLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPV 489
+LDS+ K H I + +L++E + SDL + E W H + + +
Sbjct: 136 YLDSMGQKGH---RICEILLQYLQDE----SKTKRNSDLNLLE--WTHHSMKPHE----I 182
Query: 490 PQQKNDYDCGLFVLFFMERFMEEAP 514
PQQ N D G+F + + + P
Sbjct: 183 PQQLNGSDSGMFTCKYADYISRDKP 207
>pdb|3EAY|A Chain A, Crystal Structure Of The Human Senp7 Catalytic Domain
Length = 323
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 300 MIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 359
++ I YP + + D+ L +L I++FY++YL L+ + ++ + H
Sbjct: 17 LVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKA-SDELVERSH 75
Query: 360 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRR------WWKGVNIFQKSYVLIPIHEDVHWS 413
F+++FY L ++ D + + RR W + +NIF K Y+ +P++E HW
Sbjct: 76 IFSSFFYKCLTRKENNLTEDNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWY 135
Query: 414 LVIICIP 420
L +IC P
Sbjct: 136 LAVICFP 142
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 428 PIILHLDSLKLHCSLSIFSNIRSFLKEEWNY-LKQEVSPSDLPIAERIWQHLPRRIDDRI 486
P IL LDSLK + N+R +L+ EW LK S + D
Sbjct: 206 PCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTHRQFSKTNMV------------DLC 253
Query: 487 IPVPQQKNDYDCGLFVLFFMERFMEE 512
VP+Q N DCG+++L ++E F ++
Sbjct: 254 PKVPKQDNSSDCGVYLLQYVESFFKD 279
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 31/187 (16%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 44 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 99
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 100 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 145
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 146 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 193
Query: 495 DYDCGLF 501
DCG+F
Sbjct: 194 GSDCGMF 200
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 31/187 (16%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 36 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 91
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 92 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 137
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 138 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 185
Query: 495 DYDCGLF 501
DCG+F
Sbjct: 186 GSDCGMF 192
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 31/187 (16%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 181
Query: 495 DYDCGLF 501
DCG+F
Sbjct: 182 GSDCGMF 188
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 32/187 (17%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQ-----IPQQMN 180
Query: 495 DYDCGLF 501
DCG+F
Sbjct: 181 GSDCGMF 187
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 31/187 (16%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 32 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 87
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 88 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 133
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 134 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 181
Query: 495 DYDCGLF 501
D G+F
Sbjct: 182 GSDAGMF 188
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 81/187 (43%), Gaps = 31/187 (16%)
Query: 316 VEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH 375
+ I DI L +L I+NFY+ L ++ + + H FNT+F++KLK A
Sbjct: 11 LTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKE--KGLPSVHAFNTFFFTKLKTAG-- 66
Query: 376 KGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDS 435
+ +RW K V++F +L+PIH VHW L ++ K I + DS
Sbjct: 67 --------YQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKN------ITYYDS 112
Query: 436 LKLHCSLSIFSNIRSFLKEEWNYLKQE-VSPSDLPIAERIWQHLPRRIDDRIIPVPQQKN 494
+ I + L + YLKQE + WQ ++ + +PQQ N
Sbjct: 113 MG-----GINNEACRILLQ---YLKQESIDKKRKEFDTNGWQLFSKKSQE----IPQQMN 160
Query: 495 DYDCGLF 501
D G+F
Sbjct: 161 GSDSGMF 167
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 47/217 (21%)
Query: 311 VDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLK 370
++ +++EI D LAP +L I+ F+++Y++ +++P A FN++FY+ L
Sbjct: 28 MNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-KSTPNTVA------FNSFFYTNLS 80
Query: 371 EAVSHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIH-EDVHWSLVIICIPDKEDESG 427
E ++G RRW K I + + PI+ HW+L II + K
Sbjct: 81 ER-GYQG---------VRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT---- 126
Query: 428 PIILHLDSLKLH---CSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDD 484
I ++DSL S +I ++++ ++ EE + D +
Sbjct: 127 --IGYVDSLSNGPNAMSFAILTDLQKYVMEE----SKHTIGEDFDLIH------------ 168
Query: 485 RIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 521
+ PQQ N YDCG++V +AP KD
Sbjct: 169 --LDCPQQPNGYDCGIYVCMNTLYGSADAPLDFDYKD 203
>pdb|2HKP|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfenic Acid
pdb|2HL8|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfinic Acid
pdb|2HL9|A Chain A, Sumo Protease Ulp1 With The Catalytic Cysteine Oxidized To
A Sulfonic Acid
Length = 221
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 47/214 (21%)
Query: 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAV 373
+++EI D LAP +L I+ F+++Y++ +++P A FN++FY+ L E
Sbjct: 31 DNIEITVRDFKTLAPRRWLNDTIIEFFMKYIE-KSTPNTVA------FNSFFYTNLSER- 82
Query: 374 SHKGGDKDSFFIKFRRWW--KGVNIFQKSYVLIPIH-EDVHWSLVIICIPDKEDESGPII 430
++G RRW K I + + PI+ HW+L II + K I
Sbjct: 83 GYQG---------VRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKKT------I 127
Query: 431 LHLDSLKLH---CSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRII 487
++DSL S +I ++++ ++ EE + D + +
Sbjct: 128 GYVDSLSNGPNAMSFAILTDLQKYVMEE----SKHTIGEDFDLIH--------------L 169
Query: 488 PVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 521
PQQ N YD G++V +AP KD
Sbjct: 170 DCPQQPNGYDXGIYVCMNTLYGSADAPLDFDYKD 203
>pdb|1XT9|A Chain A, Crystal Structure Of Den1 In Complex With Nedd8
Length = 212
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 470 IAERIWQHLPRRIDDRII---PVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMVL 526
+AE++ L R+ D P Q+N YDCG++V+ E + + + L ++
Sbjct: 132 VAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLT 191
Query: 527 PAITNR 532
PA +
Sbjct: 192 PAYITK 197
>pdb|2BKQ|A Chain A, Nedd8 Protease
pdb|2BKQ|B Chain B, Nedd8 Protease
pdb|2BKQ|C Chain C, Nedd8 Protease
pdb|2BKQ|D Chain D, Nedd8 Protease
pdb|2BKR|A Chain A, Nedd8 Nedp1 Complex
Length = 212
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 470 IAERIWQHLPRRIDDRII---PVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMVL 526
+AE++ L R+ D P Q+N YDCG++V+ E + + + L ++
Sbjct: 132 VAEKLEAFLGRKGDKLAFVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLT 191
Query: 527 PAITNR 532
PA +
Sbjct: 192 PAYITK 197
>pdb|3MT0|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Pa17 Pseudomonas Aeruginosa Pao1
Length = 290
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 22/115 (19%)
Query: 32 LIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCLPDKGK 91
LI+K+ P P +K++ DD +L R P L + AR P G
Sbjct: 92 LIIKQHFPDNPLKKAILTPDD----WKLLRFAPCPVLXTKTAR------------PWTGG 135
Query: 92 KILATVTRLEKECERRRL-AGAVPVCLDIDGCDKLTQSPSSDCFTQRTPSPQIQS 145
KILA V + E R L AG + DI G K T S PSP + S
Sbjct: 136 KILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVIS-----AHPSPXLSS 185
>pdb|2IZP|A Chain A, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IZP|B Chain B, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IXR|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|B Chain B, Bipd Of Burkholderia Pseudomallei
pdb|3NFT|A Chain A, Near-Atomic Resolution Analysis Of Bipd- A Component Of
The Type-Iii Secretion System Of Burkholderia
Pseudomallei
Length = 303
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 27 DVPAELIVKKSGPPTPAQKSVPMSDDPGSGEELDRQIPDQELGVRIARMKDTYSKVRHCL 86
D PA + K+ P ++ M+DD +DR++P+Q+LG I D ++ +R L
Sbjct: 8 DWPALEALAKTMPADAGARA--MTDDDLRAAGVDRRVPEQKLGAAI----DEFASLR--L 59
Query: 87 PDK 89
PD+
Sbjct: 60 PDR 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,756,683
Number of Sequences: 62578
Number of extensions: 740014
Number of successful extensions: 1382
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1350
Number of HSP's gapped (non-prelim): 17
length of query: 542
length of database: 14,973,337
effective HSP length: 104
effective length of query: 438
effective length of database: 8,465,225
effective search space: 3707768550
effective search space used: 3707768550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)