Query 009157
Match_columns 542
No_of_seqs 215 out of 1120
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 20:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 9.7E-45 3.3E-49 372.9 21.2 223 302-536 19-313 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 3.4E-44 1.2E-48 353.5 23.5 221 285-538 2-225 (226)
3 2xph_A Sentrin-specific protea 100.0 1E-43 3.5E-48 352.8 23.9 222 283-538 12-237 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 1.9E-42 6.6E-47 340.0 22.1 208 285-538 4-220 (221)
5 2bkr_A Sentrin-specific protea 100.0 1.4E-37 4.7E-42 303.3 16.7 183 314-536 9-209 (212)
6 2oix_A Xanthomonas outer prote 100.0 1.2E-32 4.2E-37 263.8 12.7 173 328-536 1-181 (186)
7 4ekf_A Adenain; alpha and beta 94.9 0.17 5.7E-06 47.8 10.5 81 409-512 52-136 (204)
8 3v1a_A Computational design, M 28.7 57 0.0019 24.0 3.6 43 64-106 2-45 (48)
9 3j21_W 50S ribosomal protein L 22.0 34 0.0012 27.1 1.5 51 60-110 6-64 (72)
10 3iv1_A Tumor susceptibility ge 22.0 44 0.0015 27.0 2.1 41 66-106 14-57 (78)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.7e-45 Score=372.87 Aligned_cols=223 Identities=26% Similarity=0.529 Sum_probs=179.9
Q ss_pred CCeeecCCCCCCCceEEecccccccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHHhhhc--CCCC
Q 009157 302 DAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH--KGGD 379 (542)
Q Consensus 302 ~~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfyl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~--kg~d 379 (542)
...|+||+++++++++|+.+||.||.+++||||+|||||++||..+... .....++|+||||||++|...... .+..
T Consensus 19 ~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~-~~~~~r~h~FnSFFy~kL~~~~~~~~~~~~ 97 (323)
T 3eay_A 19 QKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKAS-DELVERSHIFSSFFYKCLTRKENNLTEDNP 97 (323)
T ss_dssp CEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSC-HHHHHTEEECCTHHHHHHSCC--------C
T ss_pred ceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhcc-ccccCcEEEEchHHHHHHHhcccccccccc
Confidence 3679999999999999999999999999999999999999999754332 123468999999999999863210 0000
Q ss_pred ----chhhhHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCC-------------------------------
Q 009157 380 ----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED------------------------------- 424 (542)
Q Consensus 380 ----~~~~f~~vkrWtk~vdIf~kd~IfIPIn~~~HWsLvVId~~~k~~------------------------------- 424 (542)
....|.+|+||++++|||++|+||||||.+.||+|+|||+|..+.
T Consensus 98 ~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 177 (323)
T 3eay_A 98 NLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDNDLR 177 (323)
T ss_dssp CSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC---------------------------
T ss_pred cchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCcccccccccccccccccccccccccccccccccc
Confidence 124689999999999999999999999999999999999997420
Q ss_pred -------------------------CCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCC
Q 009157 425 -------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLP 479 (542)
Q Consensus 425 -------------------------~~~~~I~~yDSL~~~~~k~v~~~L~~~L~~e~~~~~~~~~~~Dl~~~~~~Wk~lp 479 (542)
.++|+|+|||||++++...++..|+.||..||+.+.+.. ..++...|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~~-- 251 (323)
T 3eay_A 178 TTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMVD-- 251 (323)
T ss_dssp ----------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSCE--
T ss_pred cccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHcee--
Confidence 135799999999998778899999999999998865432 1233334432
Q ss_pred ccccccCCCcCCCCCCCChHHHHHHHHHHHhhhCCCC----------CCHHhHHHHHHHHHHHHHhc
Q 009157 480 RRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPER----------LKKKDLAMVLPAITNRTCYV 536 (542)
Q Consensus 480 ~~i~~~~~~vPqQ~Ng~DCGVFVL~yae~~~~~~p~~----------ftq~dm~~fR~~i~~~ll~~ 536 (542)
....+|||.|++|||||||+||++|+.+.+.. |+..+|...|..|..-|+..
T Consensus 252 -----~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~~~~~~~wf~~~~i~~kR~ei~~LI~~L 313 (323)
T 3eay_A 252 -----LCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFELPIHLEKWFPRHVIKTKREDIRELILKL 313 (323)
T ss_dssp -----ECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCSSCBCTTSSCHHHHHTHHHHHHHHHHHH
T ss_pred -----ccCCCCCcCCCCcHHHHHHHHHHHHHhCCccccccccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999987543 56789999999999877654
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=3.4e-44 Score=353.50 Aligned_cols=221 Identities=27% Similarity=0.467 Sum_probs=185.9
Q ss_pred CCccchHHHHHHHHhhcC---CeeecCCCCCCCceEEecccccccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEE
Q 009157 285 LHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (542)
Q Consensus 285 ~~~~~~e~~~e~~~~~~~---~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfyl~~L~~~~~~~~~~~~~v~~f 361 (542)
++|.+.|+..++...+.. ..+.. ...++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEE
Confidence 577888888888888742 22322 2468999999999999999999999999999998765321 24689999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCc
Q 009157 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 441 (542)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~f~~vkrWtk~vdIf~kd~IfIPIn~~~HWsLvVId~~~k~~~~~~~I~~yDSL~~~~~ 441 (542)
|||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+++.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999998762 3678999999999999999999999999999999999987 999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChHHHHHHHHHHHhhhCCCCCCHHh
Q 009157 442 LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 521 (542)
Q Consensus 442 k~v~~~L~~~L~~e~~~~~~~~~~~Dl~~~~~~Wk~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~yae~~~~~~p~~ftq~d 521 (542)
..++..|..||..++..+.+ .+ +....|+.. .+...++|||.||+|||||||+||++|+.+.|..|+++|
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~----~~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~d 208 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRN----SD--LNLLEWTHH----SMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ 208 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CC--CCGGGCEEE----ECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcC----CC--CCcccceec----cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhh
Confidence 46888999999998765432 22 234568642 123568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCc
Q 009157 522 LAMVLPAITNRTCYVSY 538 (542)
Q Consensus 522 m~~fR~~i~~~ll~~~~ 538 (542)
|++||++|+.+|+...+
T Consensus 209 m~~~R~~~~~ei~~~~l 225 (226)
T 1th0_A 209 MPLFRKKMVWEILHQQL 225 (226)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999998754
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=1e-43 Score=352.81 Aligned_cols=222 Identities=24% Similarity=0.415 Sum_probs=187.6
Q ss_pred CCCCccchHHHHHHHHhhcC----CeeecCCCCCCCceEEecccccccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCce
Q 009157 283 GSLHIETTEQADEFAECMID----AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 358 (542)
Q Consensus 283 ~~~~~~~~e~~~e~~~~~~~----~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfyl~~L~~~~~~~~~~~~~v 358 (542)
..+|+.+.|...+|..++.. ..+. .+.++.|+.+|+.+|.+++||||+|||||++||.++.... ...++
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~-----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~ 84 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLS-----EAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSV 84 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCE-----EETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCE
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheee-----cCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCce
Confidence 34788888888988888752 1222 2468999999999999999999999999999998876432 25689
Q ss_pred EEEchhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCCEEEEEeecCCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 009157 359 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 438 (542)
Q Consensus 359 ~~fnTfFy~kL~~~~~~kg~d~~~~f~~vkrWtk~vdIf~kd~IfIPIn~~~HWsLvVId~~~k~~~~~~~I~~yDSL~~ 438 (542)
|+||||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+++.+ +|+|||||++
T Consensus 85 ~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~~ 148 (238)
T 2xph_A 85 HAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMGG 148 (238)
T ss_dssp EECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCC
T ss_pred eeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeecccC
Confidence 99999999998752 3789999999999999999999999999999999999987 9999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChHHHHHHHHHHHhhhCCCCCC
Q 009157 439 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK 518 (542)
Q Consensus 439 ~~~k~v~~~L~~~L~~e~~~~~~~~~~~Dl~~~~~~Wk~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~yae~~~~~~p~~ft 518 (542)
.+ ...+..|..||..++..+.+. + +....|+.. .....++|||.||+|||||||+||++|+.+.|..|+
T Consensus 149 ~~-~~~~~~l~~~L~~e~~~k~~~----~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~ 217 (238)
T 2xph_A 149 IN-NEACRILLQYLKQESIDKKRK----E--FDTNGWQLF----SKKSQEIPQQMNGSDCGMFACKYADCITKDRPINFT 217 (238)
T ss_dssp CC-HHHHHHHHHHHHHHHHHHHCS----C--CCCTTCEEE----ECCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCC
T ss_pred CC-HHHHHHHHHHHHHHHHHhcCC----C--cCcccceec----ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcC
Confidence 76 457788999999988764321 1 233568642 124578999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHhcCc
Q 009157 519 KKDLAMVLPAITNRTCYVSY 538 (542)
Q Consensus 519 q~dm~~fR~~i~~~ll~~~~ 538 (542)
++||+.||++|+.+|+...+
T Consensus 218 q~dm~~~R~~m~~eil~~~l 237 (238)
T 2xph_A 218 QQHMPYFRKRMVWEILHRKL 237 (238)
T ss_dssp GGGHHHHHHHHHHHHHHTCC
T ss_pred hhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999998765
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=1.9e-42 Score=340.04 Aligned_cols=208 Identities=25% Similarity=0.420 Sum_probs=175.9
Q ss_pred CCccchHHHHHHHHhhcC---CeeecCCCCCCCceEEecccccccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEE
Q 009157 285 LHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 361 (542)
Q Consensus 285 ~~~~~~e~~~e~~~~~~~---~~i~yP~~~~~~~i~Lt~~DL~~L~~~~WLND~IInfyl~~L~~~~~~~~~~~~~v~~f 361 (542)
+|+.+.++..+|.+.|.. ..++ .++++.|+.+|+.+|.+++||||+|||||++||.... +++|+|
T Consensus 4 ~~~l~~~~~~~v~~~l~~~~~~~l~-----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f 71 (221)
T 1euv_A 4 VPELNEKDDDQVQKALASRENTQLM-----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAF 71 (221)
T ss_dssp SCCCCHHHHHHHHHHHTCSSCCEEE-----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEEC
T ss_pred CCCCCHHHHHHHHHHhcCCCCeeee-----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEE
Confidence 567888888888888753 1232 3578999999999999999999999999999998752 479999
Q ss_pred chhhHHHHHHhhhcCCCCchhhhHHHHhhhc--cccCCCCCEEEEEeec-CCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 009157 362 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKL 438 (542)
Q Consensus 362 nTfFy~kL~~~~~~kg~d~~~~f~~vkrWtk--~vdIf~kd~IfIPIn~-~~HWsLvVId~~~k~~~~~~~I~~yDSL~~ 438 (542)
|||||++|... .|.+|++|++ ++++|++++||||||. ++||+|+||+++.+ +|+|||||+.
T Consensus 72 ~s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~ 135 (221)
T 1euv_A 72 NSFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSN 135 (221)
T ss_dssp CTHHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCC
T ss_pred EcHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCC
Confidence 99999999762 3778999997 6799999999999998 59999999999987 9999999986
Q ss_pred CCcH---HHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccCCCcCCCCCCCChHHHHHHHHHHHhhhCCC
Q 009157 439 HCSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPE 515 (542)
Q Consensus 439 ~~~k---~v~~~L~~~L~~e~~~~~~~~~~~Dl~~~~~~Wk~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~yae~~~~~~p~ 515 (542)
.++. .+++.|+.||..+++.+. + ..|. +...++|||.||+|||||||+||++++.+.|.
T Consensus 136 ~~~~~~~~i~~~l~~~l~~e~~~~~----~-------~~~~-------~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l 197 (221)
T 1euv_A 136 GPNAMSFAILTDLQKYVMEESKHTI----G-------EDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPL 197 (221)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTSSS----C-------TTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhc----C-------CCce-------EeecCCCCCCCCcCHHHHHHHHHHHHhCCCCC
Confidence 5432 577888899987754321 1 1232 23468999999999999999999999999999
Q ss_pred CCCHHhHHHHHHHHHHHHHhcCc
Q 009157 516 RLKKKDLAMVLPAITNRTCYVSY 538 (542)
Q Consensus 516 ~ftq~dm~~fR~~i~~~ll~~~~ 538 (542)
.|+++||+.||++|+.+|+.++|
T Consensus 198 ~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 198 DFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CcCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999987
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=1.4e-37 Score=303.29 Aligned_cols=183 Identities=17% Similarity=0.253 Sum_probs=147.6
Q ss_pred CceEEecccccccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEc---hhhHHHHHHhhhcCCCCchhhhHHHHhh
Q 009157 314 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 390 (542)
Q Consensus 314 ~~i~Lt~~DL~~L~~~~WLND~IInfyl~~L~~~~~~~~~~~~~v~~fn---TfFy~kL~~~~~~kg~d~~~~f~~vkrW 390 (542)
.++.|+.+|+.+|.+++||||+|||||++||..+...+. ..++|+|| ||||..+. .+..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~--~~~~~~~~p~~s~f~~~~~------------~~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS--SDHVSFISPEVTQFIKCTS------------NPAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG--TTTEEEECHHHHHHHHHCC------------CHHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC--CCcEEEEChHHHHHHHhCC------------CHHHHHHH
Confidence 579999999999999999999999999999999875432 57899999 89985432 15689999
Q ss_pred hccccCCCCCEEEEEeec-------CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Q 009157 391 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 463 (542)
Q Consensus 391 tk~vdIf~kd~IfIPIn~-------~~HWsLvVId~~~k~~~~~~~I~~yDSL~~~~~k~v~~~L~~~L~~e~~~~~~~~ 463 (542)
++++++|++++||||||. ++||+|+||+++++ +|+|||||++.+.. ....+..+|...+. .+.
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~~-~~~~l~~~l~~~l~---~~~ 144 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNSV-HAKQVAEKLEAFLG---RKG 144 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTHH-HHHHHHHHHHHHHS---CTT
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCHH-HHHHHHHHHHHHhC---Ccc
Confidence 999999999999999995 79999999999987 99999999987643 33334444443221 110
Q ss_pred CCCCCcccccccccCCccccccCCCcCCCCCCCChHHHHHHHHHHHhhhC--------CCCCCHHhHHHHHHHHHHHHHh
Q 009157 464 SPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEA--------PERLKKKDLAMVLPAITNRTCY 535 (542)
Q Consensus 464 ~~~Dl~~~~~~Wk~lp~~i~~~~~~vPqQ~Ng~DCGVFVL~yae~~~~~~--------p~~ftq~dm~~fR~~i~~~ll~ 535 (542)
..|. +...++|||.||+|||||||+||++|+.+. +..|++++|..+|+.|+..|+.
T Consensus 145 ---------~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 145 ---------DKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQQTESLLQLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp ---------CCCC-------EEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSCCCCCHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred ---------ccce-------EeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhcCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 0122 234689999999999999999999999974 2458999999999999988865
Q ss_pred c
Q 009157 536 V 536 (542)
Q Consensus 536 ~ 536 (542)
.
T Consensus 209 L 209 (212)
T 2bkr_A 209 L 209 (212)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.98 E-value=1.2e-32 Score=263.80 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=123.3
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHHhhhcCCCCchhhhHHHHhhhccccCCCCCEEEEEee
Q 009157 328 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 407 (542)
Q Consensus 328 ~~~WLND~IInfyl~~L~~~~~~~~~~~~~v~~fnTfFy~kL~~~~~~kg~d~~~~f~~vkrWtk~vdIf~kd~IfIPIn 407 (542)
+++||||+|||||++||.++..... ...++|||+|+++..+.. . ....+..+.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~-~~~~v~f~~p~~~~~l~~----~---~~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEP-NAHLLHFADSQVVTMLSS----A---DPDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTST-TGGGEEECCHHHHHHTTC----S---SHHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhcc-CcceEEEECHHHHHHHHh----C---CHHHHHHHHHHcccccc--cCEEEEEEe
Confidence 4799999999999999999975432 124599999876554432 1 12346788888877665 999999999
Q ss_pred c-CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccccCCccccccC
Q 009157 408 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 486 (542)
Q Consensus 408 ~-~~HWsLvVId~~~k~~~~~~~I~~yDSL~~~~~k~v~~~L~~~L~~e~~~~~~~~~~~Dl~~~~~~Wk~lp~~i~~~~ 486 (542)
. ++||+|+||+.+++ .-|+|+|||||++.+.. ...+...|.. .+... .. .+..
T Consensus 71 ~~~~HWsLlvi~~~~~---~~~~~~~~DSl~~~~~~--~~~l~~~l~~---~l~~~-----------~~-------~~~~ 124 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNK---DAVAAYHYDSMAQKDPQ--QRYLADMAAY---HLGLD-----------YQ-------QTHE 124 (186)
T ss_dssp ETTTEEEEEEEECSST---TSCEEEEECCCSSCCHH--HHHHHHHHHH---HTTCC-----------GG-------GCEE
T ss_pred CCCCccEEEEEECCCC---eeeeeEEEcCCCCCCHH--HHHHHHHHHH---HhCCC-----------cc-------cccc
Confidence 8 89999999999987 12344999999986532 2222233322 11110 00 1234
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHhhh-------CCCCCCHHhHHHHHHHHHHHHHhc
Q 009157 487 IPVPQQKNDYDCGLFVLFFMERFMEE-------APERLKKKDLAMVLPAITNRTCYV 536 (542)
Q Consensus 487 ~~vPqQ~Ng~DCGVFVL~yae~~~~~-------~p~~ftq~dm~~fR~~i~~~ll~~ 536 (542)
.++|||.||||||||||+||++++.. .+..++.++|..+|+.|...|...
T Consensus 125 ~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 125 MPIAIQSDGYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp ECBCCCC--CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999863 245678899999999999887653
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=94.90 E-value=0.17 Score=47.77 Aligned_cols=81 Identities=20% Similarity=0.277 Sum_probs=50.8
Q ss_pred CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhh-ccCC--CCCCcccccccccCCccccc-
Q 009157 409 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLK-QEVS--PSDLPIAERIWQHLPRRIDD- 484 (542)
Q Consensus 409 ~~HWsLvVId~~~k~~~~~~~I~~yDSL~~~~~k~v~~~L~~~L~~e~~~~~-~~~~--~~Dl~~~~~~Wk~lp~~i~~- 484 (542)
+.||.....+.... ++|.||.+|.+..+ |.++..=++..+- .... ..| +.|+.
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~~-----L~qiY~F~Y~~llkRSAL~sspd------------RCv~Lv 108 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQR-----LKQVYQFEYESLLRRSAIASSPD------------RCITLE 108 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSHH-----HHHHHHHHHHHHHHHHCC--------------------EEE
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHHH-----HHHHhhhhHHHHHHHHhhcCCCC------------ceeEEE
Confidence 69999999999887 99999999998742 2222222222111 1100 111 23332
Q ss_pred cCCCcCCCCCCCChHHHHHHHHHHHhhh
Q 009157 485 RIIPVPQQKNDYDCGLFVLFFMERFMEE 512 (542)
Q Consensus 485 ~~~~vPqQ~Ng~DCGVFVL~yae~~~~~ 512 (542)
+..+.-|=.++--||+|.|.|+.+|..-
T Consensus 109 kstqsVQcp~SaACGLFC~lFL~aF~~~ 136 (204)
T 4ekf_A 109 KSTQSVQGPNSAAAGLFCCMFLHAFANW 136 (204)
T ss_dssp ECCSBCSCTTCCCHHHHHHHHHHHHHHC
T ss_pred eccccccCcCchhHHHHHHHHHHHHHhC
Confidence 2345556677889999999999999873
No 8
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=28.71 E-value=57 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=34.2
Q ss_pred CchHHHHHHHHhhhhhc-ccccCCCcchHhHHHHHHHHHHHHHH
Q 009157 64 PDQELGVRIARMKDTYS-KVRHCLPDKGKKILATVTRLEKECER 106 (542)
Q Consensus 64 ~D~~L~e~i~r~~~~l~-~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (542)
||..|.|+|-=+++++. .-..|==|-=+-|.+.|..|++|++|
T Consensus 2 ~~dPL~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 2 SGSPLAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 57799999999999985 33344446677789999999999986
No 9
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.02 E-value=34 Score=27.09 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=37.2
Q ss_pred cCCCCchHHHHHHHHhhhhhc------cccc--CCCcchHhHHHHHHHHHHHHHHHhhh
Q 009157 60 DRQIPDQELGVRIARMKDTYS------KVRH--CLPDKGKKILATVTRLEKECERRRLA 110 (542)
Q Consensus 60 ~~~~~D~~L~e~i~r~~~~l~------~~~~--~lpD~G~K~~~~i~~~~~E~~rR~~~ 110 (542)
++.+|+.||.+++...+..|- .++. -=|-+=..+|+.|.|+.=.+..|.+.
T Consensus 6 lr~~s~~EL~~~L~elk~ELf~LR~q~atgq~l~n~~~ir~vRr~IARi~Tvl~er~~~ 64 (72)
T 3j21_W 6 IREMSIEEIDAKIRELRLQLAKERGLLTMGTSLENPMVIRNLRRDIARLLTIKKEKLRE 64 (72)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999888873 2322 22555567888999988777666553
No 10
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=21.96 E-value=44 Score=27.04 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=32.5
Q ss_pred hHHHHHHHHhhhhhc---ccccCCCcchHhHHHHHHHHHHHHHH
Q 009157 66 QELGVRIARMKDTYS---KVRHCLPDKGKKILATVTRLEKECER 106 (542)
Q Consensus 66 ~~L~e~i~r~~~~l~---~~~~~lpD~G~K~~~~i~~~~~E~~r 106 (542)
+.|+|.+.+.+..|. .+..-|-.|+.||..-|.+|++|...
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 457777777777764 45566889999999999999999876
Done!