BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009158
         (542 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8ZW25|PRMA_DESOH Ribosomal protein L11 methyltransferase OS=Desulfococcus oleovorans
           (strain DSM 6200 / Hxd3) GN=prmA PE=3 SV=1
          Length = 302

 Score = 38.1 bits (87), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 10/109 (9%)

Query: 417 RFTSRDQISFSTVRDKLWAKTNWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPP 476
           R   R  + F+   D+ WA   W  + F+    RN VV+   RDH+ P P  V +DL+ P
Sbjct: 80  RHPVRCTLEFTPCDDQDWANA-WKDHFFVQKIGRNIVVRPTWRDHV-PEPGEVVIDLD-P 136

Query: 477 PLSLAVEAPPPPALVSDLPKK-------FPLETTGERVVRVPTRKVSPR 518
            ++      P  A+  ++ +K       F    TG  ++ +  +K+  +
Sbjct: 137 GMAFGTGTHPTTAMCLEMVEKHLAPGTAFLDVGTGSGILMIAAQKLGAK 185


>sp|A5UKU6|SYA_METS3 Alanine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
           ATCC 35061 / DSM 861) GN=alaS PE=3 SV=1
          Length = 897

 Score = 34.7 bits (78), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 316 LVVDPYQILERHLWRKNATFAISR------HYKRFDVLVEAEANKAAKKYDNASIDFQIE 369
           +V    +IL  H+W+  A   +SR      HYKR       E  K A +Y   +I+  I+
Sbjct: 597 IVAAARKILGEHIWQAGAQKGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIK 656

Query: 370 FY 371
           FY
Sbjct: 657 FY 658


>sp|Q24UT2|SYA_DESHY Alanine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
           GN=alaS PE=3 SV=1
          Length = 875

 Score = 34.3 bits (77), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 438 NWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPPPLSLAVEAPPPPALVSDLPKK 497
           N   +MFL     NF   K HR  ILP+   +P D     L++A   P  P  +  +   
Sbjct: 5   NQLRDMFL-----NFFASKGHR--ILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPP 57

Query: 498 FPLETTGERVVRVPTRKV 515
           FP  TT ++ VR P  +V
Sbjct: 58  FPRATTSQKCVRTPDLEV 75


>sp|Q10327|YD72_SCHPO Uncharacterized protein C32A11.02c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC32A11.02c PE=4 SV=1
          Length = 851

 Score = 33.9 bits (76), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 17/95 (17%)

Query: 137 PSFSPVLKNLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYDIRESM------SVHCG- 189
           P F  VL+NL   T  VL + AEF  ++F  + P A   N    RE+M      ++ C  
Sbjct: 444 PDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYA---NITSFRENMINVHLSNIQCDL 500

Query: 190 -----FVKGKPGRGTGYDLDEEDILDMEQCHGIVV 219
                ++K K G  T  DL   D+L  +Q  G+VV
Sbjct: 501 KDVNYYIKRKQGFPTFTDLGVVDLLIGKQ--GMVV 533


>sp|Q9Y2G9|SBNO2_HUMAN Protein strawberry notch homolog 2 OS=Homo sapiens GN=SBNO2 PE=2
           SV=3
          Length = 1366

 Score = 33.5 bits (75), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 20/92 (21%)

Query: 69  MVSVRPIESTVFPP--PPPSYFLGYTLPPGHPC-------NSFTLPPPPADKKRT----- 114
           M++V P     +P   PPP+  L Y+ PP           N+F+LPP PA    +     
Sbjct: 1   MLAVGPAMDRDYPQHEPPPAGSLLYSPPPLQSAMLHCPYWNTFSLPPYPAFSSDSRPFMS 60

Query: 115 -----GPRPCP-VCYLPVEEVIALMPKVPSFS 140
                G +PCP   Y PV    +L PK   F+
Sbjct: 61  SASFLGSQPCPDTSYAPVATASSLPPKTCDFA 92


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 221,917,846
Number of Sequences: 539616
Number of extensions: 10532219
Number of successful extensions: 42433
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 187
Number of HSP's that attempted gapping in prelim test: 38327
Number of HSP's gapped (non-prelim): 3897
length of query: 542
length of database: 191,569,459
effective HSP length: 122
effective length of query: 420
effective length of database: 125,736,307
effective search space: 52809248940
effective search space used: 52809248940
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)