Query 009158
Match_columns 542
No_of_seqs 120 out of 138
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 20:07:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 78.2 1.1 3.7E-05 43.6 2.8 93 242-341 34-136 (276)
2 1g9r_A Glycosyl transferase; a 77.4 1.9 6.4E-05 42.3 4.3 109 292-432 84-198 (311)
3 2bn5_B U1 small nuclear ribonu 41.6 18 0.0006 24.4 2.4 13 100-112 8-20 (26)
4 3u2u_A Glycogenin-1, GN-1, GN1 27.0 94 0.0032 30.3 6.0 53 272-325 56-117 (263)
5 1ll2_A Glycogenin-1; protein-s 13.0 78 0.0027 31.6 1.9 52 273-325 56-116 (333)
6 2lxi_A RNA-binding protein 10; 10.1 3E+02 0.01 21.5 4.1 53 188-255 3-57 (91)
7 2ope_A PILX; type IV pilin, mi 8.5 1.3E+02 0.0044 27.4 1.4 11 303-313 85-95 (128)
8 1o7q_A N-acetyllactosaminide a 8.2 27 0.00093 35.5 -3.3 128 199-342 32-170 (289)
9 3mx7_A FAS apoptotic inhibitor 7.7 1.1E+02 0.0036 26.3 0.5 14 301-314 72-85 (90)
10 2lkw_A Membrane fusion protein 7.0 1.5E+02 0.0051 20.0 0.9 12 75-86 4-15 (26)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=78.15 E-value=1.1 Score=43.64 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCeeEEEEechhhHHH---HhhccCCCCCcccc-ceEEEEcCCCCCCCccccCC-----cceecccccCC-CCCEEEEEe
Q 009158 242 KTVCFVMFVDEETEAY---LKANSGLDRTKKIG-IWRIVVIHNPPYSDARRTGK-----IPKLLAHRLFP-NARFSLWID 311 (542)
Q Consensus 242 ~~VcFicFTDe~tl~~---l~~~~~~~~~~k~G-~WrIV~V~~lpy~D~rRngR-----ipKiLpHrLFP-nyrYSIWID 311 (542)
..++|++++|+.+... |+.-. . ..| .-+++.++...+.....+.+ +.|++...||| +++--||+|
T Consensus 34 ~~~~~~il~~~is~~~~~~L~~~~--~---~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD 108 (276)
T 3tzt_A 34 RIFDVYLIHSRISEDKLKDLGEDL--K---KFSYTLYPIRATDDLFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLD 108 (276)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHH--H---TTTCEEEEEECC-------------CHHHHHHHTHHHHSCTTCCEEEEEC
T ss_pred CceEEEEEeCCCCHHHHHHHHHHH--H---HcCCEEEEEEeCHHHHhcCccccccCHHHHHHHHHHHHcccccCeEEEEe
Confidence 4789999998755432 22110 0 011 22333333322222111222 56888899999 699999999
Q ss_pred CceEEecCHHHHHHHHhhccCCeEEEecCC
Q 009158 312 GKLELVVDPYQILERHLWRKNATFAISRHY 341 (542)
Q Consensus 312 gkIqL~~DP~~LLe~~Lwr~n~~~AIskHp 341 (542)
+-+.+.+|+..|.+.-+ ++..+|+..+.
T Consensus 109 ~D~iv~~di~~L~~~dl--~~~~~aav~d~ 136 (276)
T 3tzt_A 109 PDMLVINPLDDLLRTDI--SDYILAAASHT 136 (276)
T ss_dssp SSEEECSCSHHHHTCCC--TTSSEEEEEC-
T ss_pred CCeeecCCHHHHhhcCC--CCCeEEEEEec
Confidence 99999999999987434 45678887654
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=77.39 E-value=1.9 Score=42.25 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=67.0
Q ss_pred cceecccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCeEEEecCCCCCCHHHHHHHHHHhccCChHHHHHHHHHH
Q 009158 292 IPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYKRFDVLVEAEANKAAKKYDNASIDFQIEFY 371 (542)
Q Consensus 292 ipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~~AIskHp~R~cVYEEAeac~r~~K~d~~~I~~Qme~Y 371 (542)
+.|++...+||+++-.||||+-+.+.+|+..|.+.=+ ++..+|+..+ | +.+ ..+ ...
T Consensus 84 y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l--~~~~~aav~d----~-~~~------~~~----------~~~ 140 (311)
T 1g9r_A 84 YARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDL--GDNWLGASID----L-FVE------RQE----------GYK 140 (311)
T ss_dssp GGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCC--TTCSEEEEEC----H-HHH------TST----------THH
T ss_pred HHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCC--CCcEEEEEec----c-chh------hhH----------HHH
Confidence 4577778889999999999999999999999887434 4566777553 2 111 010 112
Q ss_pred HHcCCCCcccCCCCCCCCCCcceEEEcccC-----CchhHHHHHHHHHHh-cCCCCCCchHHHHHhh
Q 009158 372 KNEGLTPYSEAKLPITSDVPEGCVIIREHV-----PISNLFVCLWFNEVD-RFTSRDQISFSTVRDK 432 (542)
Q Consensus 372 r~eGLp~~s~~klP~~sgLpE~~VIIR~Ht-----p~snlFmclWFnEv~-rfS~RDQLSF~YVl~K 432 (542)
...|+++ ..+.+-++|++=+-. ...+. .-.|.++.. ++.--||=-++.++..
T Consensus 141 ~~~~~~~--------~~~yfNsGv~linl~~~r~~~~~~~-~~~~~~~~~~~~~~~DQd~lN~~f~~ 198 (311)
T 1g9r_A 141 QKIGMAD--------GEYYFNAGVLLINLKKWRRHDIFKM-SSEWVEQYKDVMQYQDQDILNGLFKG 198 (311)
T ss_dssp HHTTCCT--------TSCCEEEEEEEECHHHHTTSCHHHH-HHHHHHHHTTTCSSHHHHHHHHHHTT
T ss_pred HhcCCCC--------CCceEeeeeeeeeHHHHHhcchHHH-HHHHHHhccCcCccCCcCHHHHHHcC
Confidence 3446643 234566788763221 22222 223444432 3555799888888764
No 3
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=41.58 E-value=18 Score=24.39 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=9.6
Q ss_pred CCccCCCCCCCCC
Q 009158 100 NSFTLPPPPADKK 112 (542)
Q Consensus 100 ~~f~~~~~~~~~~ 112 (542)
+-|++||||.-.+
T Consensus 8 nmfsvppppi~gr 20 (26)
T 2bn5_B 8 NMFSVPPPPILGR 20 (26)
T ss_dssp CCCSCCCCSCCCC
T ss_pred ceecCCCCCcccC
Confidence 5799999886543
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=26.96 E-value=94 Score=30.30 Aligned_cols=53 Identities=9% Similarity=0.145 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCCCC---------ccccCCcceecccccCCCCCEEEEEeCceEEecCHHHHHH
Q 009158 272 IWRIVVIHNPPYSD---------ARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 325 (542)
Q Consensus 272 ~WrIV~V~~lpy~D---------~rRngRipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe 325 (542)
.++++.|+.+...+ ++...-+.|++..+|. +|+--||+|+-+.+..|+..|.+
T Consensus 56 ~~~vi~V~~l~~~~~~~~~~~~rp~~~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~ 117 (263)
T 3u2u_A 56 FDEVIMVDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFD 117 (263)
T ss_dssp SSEEEECCCCCCCCHHHHHHTTCTTGGGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGG
T ss_pred CCeEEEeeecCCcchhhhhhhcCcchhHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhC
Confidence 36778886554322 2334457799999876 69999999999999999776653
No 5
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=12.96 E-value=78 Score=31.61 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=37.5
Q ss_pred eEEEEcCCCCCCCc---------cccCCcceecccccCCCCCEEEEEeCceEEecCHHHHHH
Q 009158 273 WRIVVIHNPPYSDA---------RRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILE 325 (542)
Q Consensus 273 WrIV~V~~lpy~D~---------rRngRipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe 325 (542)
++|+.|+.+...++ ....-+.|++...| ++|+-.||||+-+.+..|+..|.+
T Consensus 56 ~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~ 116 (333)
T 1ll2_A 56 DEVITVDILDSGDSAHLTLMKRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFE 116 (333)
T ss_dssp SEEEECCTTSTTSTTHHHHHHCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGG
T ss_pred CEEEEEeecCCcchhhcccccccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhC
Confidence 46777765543221 11233678888875 899999999999999999877764
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=10.05 E-value=3e+02 Score=21.54 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=29.8
Q ss_pred cccccCCCCCCCCccCChhhHHHH-hccCcEEEEEeeeC-CCcccCCCCCCCcccCCCeeEEEEechhhH
Q 009158 188 CGFVKGKPGRGTGYDLDEEDILDM-EQCHGIVVVSAIFG-AFDDINQPSNISEYSRKTVCFVMFVDEETE 255 (542)
Q Consensus 188 CGF~~g~pg~~~Gf~i~e~D~~~m-~~CkkVVVYTAIFG-nYD~L~qP~~Is~~s~~~VcFicFTDe~tl 255 (542)
+=|++| .-++++|+|+..+ +++ | .-..++-+..-..-...+++||-|.+.+..
T Consensus 3 ~i~v~n-----Lp~~~te~~l~~~F~~~----------G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A 57 (91)
T 2lxi_A 3 IVMLRM-----LPQAATEDDIRGQLQSH----------GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDA 57 (91)
T ss_dssp EEEEET-----CCSSCCHHHHHHHHHHH----------TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHH
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHHh----------CCEeEEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 346664 3478888888754 443 3 223333222111112368999999987654
No 7
>2ope_A PILX; type IV pilin, minor pilin, bacterial pathogenesis, adhesion, aggregation, filament, cell adhesion; 2.40A {Neisseria meningitidis} PDB: 2opd_A
Probab=8.48 E-value=1.3e+02 Score=27.40 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=9.7
Q ss_pred CCCEEEEEeCc
Q 009158 303 NARFSLWIDGK 313 (542)
Q Consensus 303 nyrYSIWIDgk 313 (542)
.|.||+|||+.
T Consensus 85 gYtlsvwmdS~ 95 (128)
T 2ope_A 85 GYTLSVWMNSV 95 (128)
T ss_dssp SCCCEEEEETT
T ss_pred CeeEEEEEccC
Confidence 69999999984
No 8
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=8.24 E-value=27 Score=35.45 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=73.7
Q ss_pred CCccCChhhHHHHhccCcEEEEEeeeCCCc-ccCCC----C---CCCcccCCCeeEEEEechhhHHHHhhccCCCCCccc
Q 009158 199 TGYDLDEEDILDMEQCHGIVVVSAIFGAFD-DINQP----S---NISEYSRKTVCFVMFVDEETEAYLKANSGLDRTKKI 270 (542)
Q Consensus 199 ~Gf~i~e~D~~~m~~CkkVVVYTAIFGnYD-~L~qP----~---~Is~~s~~~VcFicFTDe~tl~~l~~~~~~~~~~k~ 270 (542)
+-|+.+=-+..|-.+.-+|.+.--.+|.|- ...+. . .+- .-.|-|+.|||+... ++.- .+++..
T Consensus 32 gtf~~~~l~~~~~~~n~tIGl~vfa~GkY~~~fl~~Fl~SAEk~Fm~---g~~v~YYVFTD~~~~--~p~v-~l~~~r-- 103 (289)
T 1o7q_A 32 GTYNRAVLDNYYAKQKITVGLTVFAVGRYIEHYLEEFLTSANKHFMV---GHPVIFYIMVDDVSR--MPLI-ELGPLR-- 103 (289)
T ss_dssp TSBCHHHHHHHHHHHTCCEEEEEEECTTHHHHHHHHHHHHHHHHBST---TSCEEEEEEESCGGG--CCCC-CCCTTE--
T ss_pred CcCCHHHHHHHHHhhCCeEEEEEEEecccHHHHHHHHHHHHHHhccC---CCeEEEEEEeCChhh--CCcc-ccCCCC--
Confidence 347777777788888877877777789995 22111 1 221 258899999998642 2210 111111
Q ss_pred cceEEEEcCCC-CCC--CccccCCcceecccccCCCCCEEEEEeCceEEecCHHHHHHHHhhccCCeEEEecCCC
Q 009158 271 GIWRIVVIHNP-PYS--DARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNATFAISRHYK 342 (542)
Q Consensus 271 G~WrIV~V~~l-py~--D~rRngRipKiLpHrLFPnyrYSIWIDgkIqL~~DP~~LLe~~Lwr~n~~~AIskHp~ 342 (542)
.=+|+.|... -+. ..+|..-+-+...-+++-++||-+.+|+++.+..+.. .+.| +..+|+ -||.
T Consensus 104 -~~~V~~i~~~~~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG---~E~L---g~lv~~-lHp~ 170 (289)
T 1o7q_A 104 -SFKVFKIKPEKRWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFG---VETL---GESVAQ-LQAW 170 (289)
T ss_dssp -EEEEEECCCCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBC---GGGC---SSEEEE-ECTT
T ss_pred -eEEEEEeccccCCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCC---HHHH---HHHHHc-cCHH
Confidence 1234444332 232 3333323333333456899999999999999997653 1234 235665 5654
No 9
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=7.67 E-value=1.1e+02 Score=26.31 Aligned_cols=14 Identities=29% Similarity=0.219 Sum_probs=11.9
Q ss_pred CCCCCEEEEEeCce
Q 009158 301 FPNARFSLWIDGKL 314 (542)
Q Consensus 301 FPnyrYSIWIDgkI 314 (542)
...|.|+++||||.
T Consensus 72 ~~~y~YtL~VngKs 85 (90)
T 3mx7_A 72 GFAYEYTLEINGKS 85 (90)
T ss_dssp TTEEEEEEEETTEE
T ss_pred CccEEEEEEECCEe
Confidence 46799999999984
No 10
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=6.98 E-value=1.5e+02 Score=19.97 Aligned_cols=12 Identities=50% Similarity=0.875 Sum_probs=8.1
Q ss_pred ccceecCCCCCC
Q 009158 75 IESTVFPPPPPS 86 (542)
Q Consensus 75 ~~~~~~~~~~~~ 86 (542)
.++|++||.||.
T Consensus 4 rhsivqppappp 15 (26)
T 2lkw_A 4 RHSIVQPPAPPP 15 (26)
T ss_pred ccccccCCCcCC
Confidence 467788776654
Done!