BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009160
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 24/208 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE C A + + G + +A+ ++ ++F+ + G V V
Sbjct: 85 ITYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYN 144
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L SL+ ++ T V C + L+K++ + +L ++ ++ +D S + G+
Sbjct: 145 ERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILD-------SREDYMGKQS 197
Query: 227 ITSFADVQILGRENPVDADY-PVSAD----VAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+ SF + + N + DY P S D A+IM +SGSTGLPKGV +TH N+ S
Sbjct: 198 MYSFIESHLPAGFN--EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSH 255
Query: 282 VM------TIVPDLGSKDVYLAYLPLAH 303
I+PD L +P H
Sbjct: 256 CRDPVFGNQIIPDTA----ILTVIPFHH 279
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEV-DDSSVGRVGAPLPCSF 482
I SGGAPL+ + + P I QGYGLTET + + D G G +P
Sbjct: 346 IASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRGRDDKPGACGKVVPFFS 405
Query: 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++D G L + RGE+ + GP + GY N E T
Sbjct: 406 AKIVDLDTGKTLGVNQ---RGELCVKGPMIMKGYVNNPEAT 443
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYN 115
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 168
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 169 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHA 227
Query: 273 -----GNVLATVSAVMTIVP 287
GN +A +A++++VP
Sbjct: 228 RDPIFGNQIAPDTAILSVVP 247
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++D G L + RGE+ + GP + GY N E T
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELSVRGPMIMSGYVNNPEAT 413
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 37/262 (14%)
Query: 45 RFTSLVSTSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEY 104
R + ST + L + E++ L G ++++SR LH GE
Sbjct: 5 RMNAFPSTMMDEELNLWDFLERAAA------LFGRKEVVSR-------------LHTGEV 45
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
TY + ++ GL LG +RVA A + T
Sbjct: 46 HRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPR 105
Query: 165 LGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR 224
L + + Y LN E ++ L + + G+L TV+H + MD P + E++
Sbjct: 106 LSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEA-- 163
Query: 225 WKITSFADVQILGRE-NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTH-GNVLATVSAV 282
LG E +PV + +A YT+G+TGLPKGV+ +H VL +++A
Sbjct: 164 -----------LGEEADPVRVPERAACGMA---YTTGTTGLPKGVVYSHRALVLHSLAAS 209
Query: 283 MTIVPDLGSKDVYLAYLPLAHV 304
+ L KDV L +P+ HV
Sbjct: 210 LVDGTALSEKDVVLPVVPMFHV 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 25/118 (21%)
Query: 423 RFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG----------GTFSEVDDSSV- 471
R ++ G A + RF +G + QGYGLTET + SE + ++
Sbjct: 297 RLVVGGSAAPRSLIARFER--MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 472 GRVGAPLPCSFIKLIDWPEGGYLTSDSPMPR-----GEIVIAGPNVTVGYFKNEEKTK 524
+ G P+P +++ D P+P+ GE+ + GP +T GY+ NEE T+
Sbjct: 355 AKTGLPIPLVRLRVAD-------EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATR 405
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 56 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 115
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 116 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 168
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 169 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 227
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 228 RDPIFGNQIIPDTAILSVVP 247
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 317 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 376
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++D G L + RGE+ + GP + GY N E T
Sbjct: 377 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEAT 413
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 164 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 222
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 223 RDPIFGNQIIPDTAILSVVP 242
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++D G L + RGE+ + GP + GY N E T
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEAT 408
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 27/200 (13%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY + FE A + + G R+ + ++ ++F+ + G V V
Sbjct: 51 ITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYN 110
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E L S+N ++ T V K L+K++++ +L ++ +I MD S + G
Sbjct: 111 ERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMD-------SKTDYQGFQS 163
Query: 227 ITSFADVQILGRENPVDADYPVSAD----VAVIMYTSGSTGLPKGVMMTH---------- 272
+ +F + N D P S D +A+IM +SGSTGLPKGV + H
Sbjct: 164 MYTFVTSHLPPGFNEYDF-VPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHA 222
Query: 273 -----GNVLATVSAVMTIVP 287
GN + +A++++VP
Sbjct: 223 RDPIFGNQIIPDTAILSVVP 242
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P I QGYGLTET + + D G VG +P
Sbjct: 312 IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEA 371
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
K++D G L + RGE+ + GP + GY N E T
Sbjct: 372 KVVDLDTGKTLGVNQ---RGELCVRGPMIMSGYVNNPEAT 408
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 166/420 (39%), Gaps = 77/420 (18%)
Query: 114 ETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYS 173
E ASG+++ G +K E V + ++ + +R T V I L +
Sbjct: 60 EVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHI 119
Query: 174 LNETEVTTVICGS---KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSF 230
LN++E TT++ S + K +++ +G V+ V + + +++S V SG F
Sbjct: 120 LNDSEATTLVVHSXLYENFKPVLEKTG----VERVFVVGGEV-NSLSEVXDSGS---EDF 171
Query: 231 ADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290
+V++ NP DVA+I YT G+TG PKGV +TH N LA + + + L
Sbjct: 172 ENVKV----NP-------EEDVALIPYTGGTTGXPKGVXLTHFN-LAANALQLAVATGLS 219
Query: 291 SKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTV 350
D + P H E NL VG+ + I+K + T
Sbjct: 220 HXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEK--------YKGTF 271
Query: 351 MASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLV 410
+VP L+ + + + S K +D +Y + + GAW + L L+
Sbjct: 272 SWAVPPALNVLVNTLES--------SNKTYDWSYLKVFAT------GAWPVAPALVEKLL 317
Query: 411 FSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFS---EVD 467
R+R Q +G TE C T + +D
Sbjct: 318 KLAAEKCNNPRLRH------------------------NQIWGXTEACPXVTTNPPLRLD 353
Query: 468 DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
S+ G P +K+I +G L GEIVI GPN+ GY+K E++ +E +
Sbjct: 354 KSTTQ--GVPXSDIELKVISLEDGRELGVGE---SGEIVIRGPNIFKGYWKREKENQECW 408
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/425 (22%), Positives = 143/425 (33%), Gaps = 76/425 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TYG+ E FAS L LG EER+ + VA G V V L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
Y L + VI ++ +++ L++ +H C + S + ++
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQ---NVTQALESAEHDGC------QLIVSQPRESEPRL 160
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ I A D+A +Y+SGSTG PKG + TH N+ T +
Sbjct: 161 APLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL 220
Query: 288 DLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVL- 346
+ DV + A L G G PL++ T+ + + DA
Sbjct: 221 GIAENDVVFS-----------AAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR 269
Query: 347 ----RPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLE 402
RPTV VP + YA
Sbjct: 270 LVEHRPTVFYGVPTL--------------------------YA----------------- 286
Query: 403 KLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGT 462
N+LV + A IR S G L + G I G G TE
Sbjct: 287 ----NMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFL 342
Query: 463 FSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEK 522
+ G G P+P I+L D E G+ D + G++ I GP+ V Y+ N EK
Sbjct: 343 SNRAGAVEYGTTGRPVPGYEIELRD--EAGHAVPDGEV--GDLYIKGPSAAVMYWNNREK 398
Query: 523 TKEVY 527
++ +
Sbjct: 399 SRATF 403
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 108/283 (38%), Gaps = 70/283 (24%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G +R +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
PE G +PRG+ I + GPNV GY++ E T ++
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 108/283 (38%), Gaps = 70/283 (24%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G +R +SG
Sbjct: 264 XETTG-----------------------------------------------HMRLFISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
PE G +PRG+ I + GPNV GY++ E T ++
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 48/279 (17%)
Query: 37 PGHALRNCRFTS-LVSTSWEGISTL---AELFEQSCKEHGDKYLLGTRQLISRETEVADN 92
P ++N F VS W TL A ++ +E+GD+ + + +
Sbjct: 51 PYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAI-----------IWEG 99
Query: 93 GRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCF 152
+ + H+ +Y + +C FA+ L LG KK + VAI+ E VA+ C
Sbjct: 100 DDTSQSKHI------SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACA 153
Query: 153 RRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVD---LSGQLDT 201
R I+ EA+ + ++ VI + LKK VD + + +
Sbjct: 154 RIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTS 213
Query: 202 VKHVICMDANIPSAVSSVE-QSGR---WKITSFADVQILGRENPVDADYPVSA-DVAVIM 256
V+HVI + S ++ Q GR W+ ++ + +P ++A D I+
Sbjct: 214 VEHVIVLK----RTGSDIDWQEGRDLWWR-------DLIEKASPEHQPEAMNAEDPLFIL 262
Query: 257 YTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295
YTSGSTG PKGV+ T G L + V D D+Y
Sbjct: 263 YTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E C L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-YQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
K+ID L P RGE+ + GP + GY N E TKE+
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E C L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-FQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
K+ID L P RGE+ + GP + GY N E TKE+
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 158/434 (36%), Gaps = 87/434 (20%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
TY A+ +LG + + V + E+ ++ R T
Sbjct: 90 TYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKI 227
+ + +I ++ + K+ L V ++C+D N + G +
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVV--IVCIDDNESVPIPE----GCLRF 203
Query: 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMTIV 286
T E +D+ DV + Y+SG+TGLPKGVM+TH ++ +V+ V
Sbjct: 204 TELTQSTTEASEV-IDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGEN 262
Query: 287 PDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQGDA 343
P+L S DV L LP+ H+ L + L VG+AI + I++ A
Sbjct: 263 PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVA 322
Query: 344 SVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEK 403
++ P V+A AK ++K +DL+ R
Sbjct: 323 PMVPPIVLAI-----------------AKSSETEK-YDLSSIR----------------- 347
Query: 404 LLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGT 462
+ SG APL + + +N A +GQGYG+TE AG
Sbjct: 348 --------------------VVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTE--AGPV 385
Query: 463 FSEVDDSSVGRVGAPLPC-----------SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPN 511
+ S+G P P + +K++D G L+ + P GEI I G
Sbjct: 386 LA----MSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP---GEICIRGHQ 438
Query: 512 VTVGYFKNEEKTKE 525
+ GY N T E
Sbjct: 439 IMKGYLNNPAATAE 452
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 110/283 (38%), Gaps = 70/283 (24%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG G M++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSXGAMLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKK 368
N+ + GS I L D + + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSMIF----LPXFDPDXILDL-------MARATVLMGVPTFYTRLLQSPRLT 263
Query: 369 VDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSG 428
+ G + +LF +SG
Sbjct: 264 XETTGHM--RLF---------------------------------------------ISG 276
Query: 429 GAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDW 488
APL ADT R + G + + YG+TET + D G VG LP ++ D
Sbjct: 277 SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTD- 335
Query: 489 PEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
PE G +PRG+ I + GPNV GY++ E T ++
Sbjct: 336 PETG-----XELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFR 373
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 111/285 (38%), Gaps = 74/285 (25%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLEL-VA 309
D+A I+YTSG+TG KG ++H N LA+ S + DV + LP+ H L VA
Sbjct: 156 DLAAILYTSGTTGRSKGAXLSHDN-LASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVA 214
Query: 310 ENL-IAGVGSAIGYGT--PLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366
N+ + GS I P + D + R TV+ VP R+ R
Sbjct: 215 SNVTLFARGSXIFLPKFDPDKILDLXA-------------RATVLXGVPTFYTRLLQSPR 261
Query: 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFIL 426
+ G +LF I+GS
Sbjct: 262 LTKETTG--HXRLF----------ISGS-------------------------------- 277
Query: 427 SGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLI 486
APL ADT R + G + + YG TET + D G VG LP ++
Sbjct: 278 ---APLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVT 334
Query: 487 DWPEGGYLTSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
D PE G +PRG+ I + GPNV GY++ EKTK ++
Sbjct: 335 D-PETG-----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFR 373
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 132/314 (42%), Gaps = 25/314 (7%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRN--VTVVTIYASL 165
TY T ASGL ++G ++ + + +F + E+ +A G R +T +++
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 166 GEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRW 225
E L + +I + +K+ D + + D V+C+D S+ + +
Sbjct: 111 AE--LAKHAKASRAKLLITQACYYEKVKDFARESDV--KVMCVD-------SAPDGCLHF 159
Query: 226 KITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVS-AVMT 284
+ AD EN DV + Y+SG+TGLPKGVM+TH ++ +V+ V
Sbjct: 160 SELTQAD------ENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDG 213
Query: 285 IVPDL--GSKDVYLAYLPLAHVLELVAENLIA-GVGSAIGYGTPLTLTDTSSKIKKGTQG 341
P+L S+DV L LP+ H+ L + L VG+ I + I+K
Sbjct: 214 DNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVS 273
Query: 342 DASVLRPTVM--ASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAW 399
A V+ P +M A P + +R L K+L D A+ A G +G
Sbjct: 274 IAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMT 333
Query: 400 GLEKLLWNLLVFSK 413
+L L F+K
Sbjct: 334 EAGPVLAMCLAFAK 347
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 422 IRFILSGGAPLSADTQRFINICL-GAPIGQGYGLTETCAGGTFS-------EVDDSSVGR 473
+R I SGGAPL + + + A +GQGYG+TE AG + E D G
Sbjct: 299 LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE--AGPVLAMCLAFAKEPFDIKPGA 356
Query: 474 VGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
G + + +K++D G L + P GEI I G + GY + E T
Sbjct: 357 CGTVVRNAEMKIVDPETGASLPRNQP---GEICIRGDQIMKGYLNDPEAT 403
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 35/203 (17%)
Query: 108 TYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGE 167
+Y + E L G + R+A+ ++ E+F+ + V V
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 168 EALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP--------SAVSSV 219
L +SL ++ T V K L K++ + + T+K ++ +D+ + + +
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRN 173
Query: 220 EQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATV 279
G ++ +SF V++ +E VA+IM +SGSTGLPKGV +TH N++
Sbjct: 174 TPPG-FQASSFKTVEVDRKEQ-----------VALIMNSSGSTGLPKGVQLTHENIVTRF 221
Query: 280 S---------------AVMTIVP 287
S AV+T+VP
Sbjct: 222 SHARDPIYGNQVSPGTAVLTVVP 244
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 425 ILSGGAPLSADTQRFINICLGAP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFI 483
I SGGAPLS + + P + QGYGLTET + + D G G +P
Sbjct: 314 IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKA 373
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526
K+ID L P RGE+ + GP + GY N E TKE+
Sbjct: 374 KVIDLDTKKSL---GPNRRGEVCVKGPMLMKGYVNNPEATKEL 413
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 96 FEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRAEWFVALQGCFRR 154
FE G+ +TY + E +C A L +G +K + VA++ E + L R
Sbjct: 103 FEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162
Query: 155 NVTVVTIYASLGEEALCYSLNETEVTTVICGSK--------ELKKLVDLS-GQLDTVKHV 205
++A +L +N+ + VI + E K++VD + + V+HV
Sbjct: 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHV 222
Query: 206 ICM-DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGL 264
+ N PS + W T + PVD++ P+ ++YTSGSTG
Sbjct: 223 LVYRKTNNPSVAFHAPRDLDWA-TEKKKYKTYYPCTPVDSEDPL-----FLLYTSGSTGA 276
Query: 265 PKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
PKGV + L M D +DV+
Sbjct: 277 PKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF 308
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 24/204 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY Q A L LG K +RVA+ E+ G + V I L
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
+ + L+++ VI G+ + + Q D TV I D S+ +
Sbjct: 90 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 141
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
R V+ G +N IMYTSG+TG PKGV+ TH +V + S+
Sbjct: 142 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 189
Query: 284 TIVPDLGSKDVYLAYLPLAHVLEL 307
+ + D+ +D L LP+ HV L
Sbjct: 190 STI-DVRYRDRLLLPLPMFHVAAL 212
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 8/108 (7%)
Query: 422 IRFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGGTFSEVDDSSVGRVGAPLP 479
R+ ++GGAP+ + I I I QGY LTE+C GGT +D+ A
Sbjct: 272 FRYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRA 328
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
F + + G + GE+VI + Y+ E T++ +
Sbjct: 329 TMFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAF 373
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 24/204 (11%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
+TY Q A L LG K +RVA+ E+ G + V I L
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLD---TVKHVICMDANIPSAVSSVEQSG 223
+ + L+++ VI G+ + + Q D TV I D S+ +
Sbjct: 104 APEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD--------SLAERL 155
Query: 224 RWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM 283
R V+ G +N IMYTSG+TG PKGV+ TH +V + S+
Sbjct: 156 RSAAADEPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203
Query: 284 TIVPDLGSKDVYLAYLPLAHVLEL 307
+ + D+ +D L LP+ HV L
Sbjct: 204 STI-DVRYRDRLLLPLPMFHVAAL 226
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 423 RFILSGGAPLSADTQRFINICLGAPIG--QGYGLTETCAGGTFSEVDDSSVGRVGAPLPC 480
R+ ++GGAP+ + I I I QGY LTE+C GGT +D+ A
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 481 SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
F + + G + GE+VI + Y+ E T++ +
Sbjct: 344 MFTDVAVRGDDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAF 387
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 21/191 (10%)
Query: 120 ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179
A L L KK +RVA+ A+T +E+ A C + V + G
Sbjct: 62 AKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXG------------- 108
Query: 180 TTVICGSKELKKLVDLSGQLDTVK--HVICMDANIPSAVSSVEQSGRWKITSFADVQILG 237
G ++ L G L + + +I D +P ++ + + S A + L
Sbjct: 109 ----VGQRD-SWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWFKALP 163
Query: 238 RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297
E V PV D+A + YTSGST P+GV++TH V A + A+ L D ++
Sbjct: 164 -EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVS 222
Query: 298 YLPLAHVLELV 308
+LP H LV
Sbjct: 223 WLPFYHDXGLV 233
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 97/249 (38%), Gaps = 41/249 (16%)
Query: 103 EYEW------LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
E +W LT+ Q + N A L++ G +RV I A E+ VA G +
Sbjct: 49 EQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGR 107
Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
V + G + + +V+ S + L S D V+HV P ++
Sbjct: 108 IAVPLSVPQG------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI 161
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
V+ D+ + +YP +A + YTSGST P GV+M+H NV
Sbjct: 162 IEVD---------LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVMSHQNVR 209
Query: 277 ATVSAVMT--------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
+M+ I P +++LP H + L+ G+ + I G P L
Sbjct: 210 VNFEQLMSGYFADTDGIPP---PNSALVSWLPFYHDM-----GLVIGICAPILGGYPAVL 261
Query: 329 TDTSSKIKK 337
T S +++
Sbjct: 262 TSPVSFLQR 270
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 133/349 (38%), Gaps = 77/349 (22%)
Query: 184 CGSKELKKLVDLSGQLDTVKHVICM--DANIPSAVSSVEQSGRWKITSFADVQILGRENP 241
G KEL ++ D+ ++ DA +P A+ ++E+ DV + R
Sbjct: 102 SGDKELAHILS-----DSAPSLVLAPPDAELPPALGALER---------VDVDVRAR-GA 146
Query: 242 VDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301
V D D A+++YTSG+TG PKG ++ LAT + +DV + LPL
Sbjct: 147 VPEDGADDGDPALVVYTSGTTGPPKGAVIPR-RALATTLDALADAWQWTGEDVLVQGLPL 205
Query: 302 AHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKK-GTQGDASVLR--PTVMASVPAIL 358
HV LV +G PL + + + T+G A L T++ VP +
Sbjct: 206 FHVHGLV-----------LGILGPLRRGGSVRHLGRFSTEGAARELNDGATMLFGVPTMY 254
Query: 359 DRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAIL 418
R+ + + A L+K LA AR
Sbjct: 255 HRIAE----TLPADPELAKA---LAGAR-------------------------------- 275
Query: 419 GGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPL 478
++SG A L I G + + YG+TET + + G VG PL
Sbjct: 276 -----LLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPL 330
Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
P ++L++ +G + + GEI + GPN+ Y + T +
Sbjct: 331 PGVELRLVEE-DGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF 378
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 30/205 (14%)
Query: 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYAS 164
E TY Q + A+ L G K +RV + A GC V IY
Sbjct: 39 ETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPP 98
Query: 165 LGEEALCYS---LNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS-AVSSVE 220
E+ L + + ++ V+ + +KK + +L+T + IP+ A+ S+E
Sbjct: 99 AQEKLLDKAQRIVTNSKPVIVLXIADHIKKFT--ADELNTNPKFL----KIPAIALESIE 152
Query: 221 --QSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLAT 278
+S W+ TS S D+A + YTSGST PKGV ++H N+L
Sbjct: 153 LNRSSSWQPTSIK-----------------SNDIAFLQYTSGSTXHPKGVXVSHHNLLDN 195
Query: 279 VSAVMTIVPDLGSKDVYLAYLPLAH 303
++ + T + + ++LP H
Sbjct: 196 LNKIFTSF-HXNDETIIFSWLPPHH 219
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ ASGL + G +RVAI + +E + ++ + L
Sbjct: 32 LTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLN 91
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
+ + + L + + V+ G+ D V V+ + A + + SG
Sbjct: 92 ADEIAFVLGDGAPSVVVAGTD----------YRDIVAGVLPSLGGVKKAYAIGDGSG--- 138
Query: 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV 286
FA + L + P A +AD VI++T+ G P+G +++ GN+L S+++
Sbjct: 139 --PFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW 196
Query: 287 PDLGSKDVYLAYLPLAHVLEL 307
L DV L LPL HV L
Sbjct: 197 -RLTEADVNLGMLPLFHVTGL 216
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 437 QRFINICLGAPIGQGYGLTETCAGGTFSEVDD--SSVGRVGAPLPCSFIKLIDWPEGGYL 494
+RF C A +G +ET TF+ D S GR PL + ++D
Sbjct: 287 ERFEATCPNATFWATFGQSETSGLSTFAPYRDRPKSAGR---PLFWRTVAVVD------- 336
Query: 495 TSDSPMPRGE---IVIAGPNVTVGYFKNEEKTKEVYK 528
D P+P GE IV+ GP V GY+ N T+ ++
Sbjct: 337 AEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR 373
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 94/249 (37%), Gaps = 41/249 (16%)
Query: 103 EYEW------LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNV 156
E +W LT+ Q + N A L++ G + RV I A E+ VA G +
Sbjct: 49 EQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGD-RVVISAPQGLEYVVAFLGALQAGR 107
Query: 157 TVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216
V + G + + +V+ S + L S D V+HV P ++
Sbjct: 108 IAVPLSVPQG------GVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSI 161
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
V+ D+ + +YP +A + YTSGST P GV+ +H NV
Sbjct: 162 IEVD---------LLDLDAPNGYTFKEDEYPSTA---YLQYTSGSTRTPAGVVXSHQNVR 209
Query: 277 ATVSAVMT--------IVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTL 328
+ + I P +++LP H L+ G+ + I G P L
Sbjct: 210 VNFEQLXSGYFADTDGIPP---PNSALVSWLPFYH-----DXGLVIGICAPILGGYPAVL 261
Query: 329 TDTSSKIKK 337
T S +++
Sbjct: 262 TSPVSFLQR 270
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLA 302
P + D+A ++YTSG+TG PKGV + H NVLA ++ ++ D D +L + L+
Sbjct: 172 PGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVF-DFSGDDRWLLFHSLS 226
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 36/195 (18%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
L+Y + E A L + G K VA++ E + + G + + + L
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWK 226
E+ + Y L ++ ++ +E+K+ A +P +++
Sbjct: 550 EDRISYMLADSAAACLLT-HQEMKEQA----------------AELPYTGTTL------- 585
Query: 227 ITSFADVQILGRENPVDADYPVSA----DVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV 282
F D Q E D P +A D A IMYTSG+TG PKG + TH N+ V V
Sbjct: 586 ---FIDDQTRFEEQASD---PATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLVKHV 639
Query: 283 MTIVPDLGSKDVYLA 297
+ +D +L+
Sbjct: 640 DYMA--FSDQDTFLS 652
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 115/299 (38%), Gaps = 29/299 (9%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G W +Y + A+G +LG ++++RV + E+F + FR V
Sbjct: 47 GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 162 YASLGEEALCYSLNETEVTTVICGSK----ELKKLV-DLSGQLDTVKHVICMDANIPSAV 216
S + Y E I + + L + +L T+K++I
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG------- 158
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
+ F ++ L E PV S+DVA + + GSTGL K + TH + +
Sbjct: 159 ---------EAEEFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208
Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGV--GSAIGYGTPLTLTDTSSK 334
++ + + L VYLA LP+AH L + ++ + G + + D
Sbjct: 209 YSLKRSVEVCW-LDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL 267
Query: 335 IKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAING 393
I++ +++ P M + A R D +V GG F ARR+ A+ G
Sbjct: 268 IEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK---FSAEAARRVKAVFG 323
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 10/100 (10%)
Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSS---VGRVGAPL-PCSFI 483
GGA SA+ R + G + Q +G+ E ++ +DD V G P+ P
Sbjct: 306 GGAKFSAEAARRVKAVFGCTLQQVFGMAEGLV--NYTRLDDPEEIIVNTQGKPMSPYDES 363
Query: 484 KLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
++ D + P G ++ GP GY+K EE
Sbjct: 364 RVWD----DHDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 445 GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP 499
A I YG TE + E VD+ + +G P P S +ID +G L+S
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDE-DGKELSSGE- 347
Query: 500 MPRGEIVIAGPNVTVGYFKNEEKTKEVY 527
+GEI++ GP V+ GY N EKT E +
Sbjct: 348 --QGEIIVTGPAVSKGYLNNPEKTAEAF 373
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 251 DVAVIMYTSGSTGLPKGVMMTHGNVLA 277
D I++TSG+TG PKGV ++H N+L+
Sbjct: 146 DNYYIIFTSGTTGQPKGVQISHDNLLS 172
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 102 GEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTI 161
G W +Y + A+G +LG ++++RV + E+F + FR V
Sbjct: 47 GNTHW-SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105
Query: 162 YASLGEEALCYSLNETEVTTVICGSK----ELKKLV-DLSGQLDTVKHVICMDANIPSAV 216
S + Y E I + + L + +L T+K++I
Sbjct: 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAG------- 158
Query: 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVL 276
+ F ++ L E PV S+DVA + + GSTGL K + TH + +
Sbjct: 159 ---------EAEEFLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYI 208
Query: 277 ATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLI 313
++ + + L VYLA LP AH L + ++
Sbjct: 209 YSLKRSVEVCW-LDHSTVYLAALPXAHNYPLSSPGVL 244
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 428 GGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDD------SSVGRVGAPLPCS 481
GGA SA+ R + G + Q +G E ++ +DD ++ G+ +P S
Sbjct: 306 GGAKFSAEAARRVKAVFGCTLQQVFGXAEGLV--NYTRLDDPEEIIVNTQGKPXSPYDES 363
Query: 482 FIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ W + + P G ++ GP GY+K EE
Sbjct: 364 RV----WDD--HDRDVKPGETGHLLTRGPYTIRGYYKAEEHN 399
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIY 162
E E LTY + A + G K+ V I + + F+ + + V I
Sbjct: 61 ENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPID 120
Query: 163 ASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQS 222
+E + Y L++++ ++ T KH++ + + +++ +
Sbjct: 121 IEYPKERIQYILDDSQARMLL-----------------TQKHLVHL-------IHNIQFN 156
Query: 223 GRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV 275
G+ +I F + I RE S D+A ++YTSG+TG PKG M+ H +
Sbjct: 157 GQVEI--FEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGI 207
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 446 APIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSD---SPMP- 501
A I YG TE T E+ + + R + LP F K P+ D P+P
Sbjct: 287 AKIFNTYGPTEATVAVTSVEITNDVISRSES-LPVGFAK----PDMNIFIMDEEGQPLPE 341
Query: 502 --RGEIVIAGPNVTVGYFKNEEKTKEVY 527
+GEIVIAGP+V+ GY E T++ +
Sbjct: 342 GEKGEIVIAGPSVSRGYLGEPELTEKAF 369
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 255 IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELV 308
I+YTSGSTG PKGV ++ N+ + + P G K ++L P + L ++
Sbjct: 148 IIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGK-IFLNQAPFSFDLSVM 200
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPV--------SADVAVIMYTSG 260
D P V+S SGR T+ L E+ +D P DVA +M+TSG
Sbjct: 170 DTGAPLLVTSRPLSGRLTGTT-----TLYVEDEAASDAPAGNLATGVGPEDVACVMFTSG 224
Query: 261 STGLPKGVMMTH 272
STG PKGVM H
Sbjct: 225 STGRPKGVMSPH 236
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVS--------ADVAVIMYTSG 260
D P V+S SGR T+ L E+ +D P DVA +M+TSG
Sbjct: 170 DTGAPLLVTSRPLSGRLTGTT-----TLYVEDEAASDAPAGNLATGVGPEDVACVMFTSG 224
Query: 261 STGLPKGVMMTH 272
STG PKGVM H
Sbjct: 225 STGRPKGVMSPH 236
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 102 GEYEWLTYGQAFETICNF---ASGLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVT 157
G + +T GQ T N AS LA+ L ++ RV ++ D + + + C+ N+
Sbjct: 15 GHHIAITDGQESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSIILIHACWLANIE 74
Query: 158 VVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217
+ I L + + +V + C ++L G ++ +D +I A
Sbjct: 75 IAMINTRLTPNEMTNQMRSIDVQLIFCTLP-----LELRG-----FQIVSLD-DIEFAGR 123
Query: 218 SVEQSGRWKIT-----SFADVQILGRENP---VDADYPVSADVAVIMYTSGSTGLPKGVM 269
+ +G T ++ ++ +E+P ++ + + D+A IM+TSG+TG K V
Sbjct: 124 DITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLD-DIASIMFTSGTTGPQKAVP 182
Query: 270 MTHGNVLATVSAVMTIVPDLG-SKDV-YLAYLPLAHV 304
T N A+ LG +D +L+ LP+ H+
Sbjct: 183 QTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHI 216
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 421 RIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG--GTFSEVDDSSVGRVGAPL 478
++ IL GGA LSA T + PI +G+TETC+ E+ + VG P
Sbjct: 275 NLQKILLGGAKLSA-TMIETALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPS 333
Query: 479 PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517
+K+ + + G+ GE++I G NV GY
Sbjct: 334 ANVDVKIKNPNKEGH---------GELMIKGANVMNGYL 363
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
L+ S ++L F+ G + ++ I A I YG TE T V
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ + + + LP + K L+ E G + D +GEIVI GP+V+VGY + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVMLD 532
++ + M+D
Sbjct: 367 EKAF-TMID 374
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 229 SFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ D+ + N + ++ V D I+YTSGSTG PKGV +T+ N L + +
Sbjct: 122 NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITY-NCLVSFTKWAVEDF 180
Query: 288 DLGSKDVYLAYLPLAHVLELV 308
+L + V+L P + L ++
Sbjct: 181 NLQTGQVFLNQAPFSFDLSVM 201
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVD 467
L+ S ++L F+ G + ++ I A I YG TE T V
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVT 309
Query: 468 DSSVGRVGAPLPCSFIK----LIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523
+ + + + LP + K L+ E G + D +GEIVI GP+V+VGY + E T
Sbjct: 310 EEVLDQYKS-LPVGYCKSDCRLLIMKEDGTIAPDGE--KGEIVIVGPSVSVGYLGSPELT 366
Query: 524 KEVYKVMLD 532
++ + M+D
Sbjct: 367 EKAF-TMID 374
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 229 SFADVQILGRENPVDADYPVSADVAV-IMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP 287
+ D+ + N + ++ V D I+YTSGSTG PKGV +T+ N L + +
Sbjct: 122 NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITY-NCLVSFTKWAVEDF 180
Query: 288 DLGSKDVYLAYLPLAHVLELV 308
+L + V+L P + L ++
Sbjct: 181 NLQTGQVFLNQAPFSFDLSVM 201
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 245 DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296
+YP + D A ++YTSGSTG PKGV ++ N+ + A ++ ++ K + L
Sbjct: 171 NYPENLD-AYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLEL 221
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 31/209 (14%)
Query: 107 LTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG 166
LT+ + + A+ L G + ++RVA+ A A+ +A+ R + L
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 167 EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGR-W 225
L + E+T VI + + A+ QSG
Sbjct: 90 SAELAELIKRGEMTAA----------------------VIAVGRQVADAIF---QSGSGA 124
Query: 226 KITSFADVQILGRE----NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA 281
+I D+ G P++ A A I YTSG+TGLPK ++ + V
Sbjct: 125 RIIFLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 282 VMTIVP-DLGSKDVYLAYLPLAHVLELVA 309
+ T V G +V L +PL HV+ A
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFA 213
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Query: 405 LW-NLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTF 463
LW L+ + RA L ++ + GGA LSA I +G + Q +G+ E +
Sbjct: 287 LWLQALIEGESRAQLAS-LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLV--NY 343
Query: 464 SEVDDSS---VGRVGAPLPCSFIKLIDWPEGGYLTSDS---PMPRGEI---VIAGPNVTV 514
+ +DDS+ + G P+ C P+ +D+ P+P+GE+ + GP
Sbjct: 344 TRLDDSAEKIIHTQGYPM-C--------PDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR 394
Query: 515 GYFKNEEKTKEVY 527
GY+K+ + +
Sbjct: 395 GYYKSPQHNASAF 407
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 247 PVSAD-VAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAH 303
P AD VA + G+TG PK + TH + +V + I + YL +P AH
Sbjct: 180 PSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAH 236
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 241 PVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVP-DLGSKDVYLAYL 299
P++ A A I YTSG+TGLPK ++ + V T V G +V L
Sbjct: 144 PIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLX 203
Query: 300 PLAHVLELVA 309
PL HV+ A
Sbjct: 204 PLYHVVGFFA 213
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 127 GHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186
G ++ +RVA+ EW++ + GC R + + + + Y L ++ ++ G
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADY 246
+ ++ ++DTV C I VS G + + + V+
Sbjct: 155 EVIQ-------EVDTVASE-CPSLRIKLLVSEKSCDGWLNFKKLLN-EASTTHHCVETG- 204
Query: 247 PVSADVAVIMYTSGSTGLPK 266
S + + I +TSG++GLPK
Sbjct: 205 --SQEASAIYFTSGTSGLPK 222
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 127 GHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186
G ++ +RVA+ EW++ + GC R + + + + Y L ++ ++ G
Sbjct: 95 GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGD 154
Query: 187 KELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADY 246
+ ++ ++DTV C I VS G + + + V+
Sbjct: 155 EVIQ-------EVDTVASE-CPSLRIKLLVSEKSCDGWLNFKKLLN-EASTTHHCVETG- 204
Query: 247 PVSADVAVIMYTSGSTGLPK 266
S + + I +TSG++GLPK
Sbjct: 205 --SQEASAIYFTSGTSGLPK 222
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 13/103 (12%)
Query: 295 YLAYLPLAHVLELV-AENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMAS 353
Y P+ HVL + EN+ S I G S K+K GT V R
Sbjct: 127 YHEEFPVTHVLSIADPENMAEEAASMIQKGY------QSFKMKVGTNVKEDVKR------ 174
Query: 354 VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396
+ A+ +RV + + +VD G L R L +N W
Sbjct: 175 IEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWI 217
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 422 IRFILSGGAPLSADT-QRFINICLGAPIGQGYGLTETCAG-GTFSEVDDSSVGRVGAPLP 479
+++ + G PL+ + RF+ G + +G+G TET TF + + G +G P P
Sbjct: 343 LKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFPWM-EPKPGSIGKPTP 400
Query: 480 CSFIKLIDWPEGGYLTSDSPMPRGEIVI----AGP-NVTVGYFKNEEKTKEVY 527
I+L+D G L GEIVI P + V Y K+ E+T+E +
Sbjct: 401 GYKIELMD--RDGRLCEVG--EEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449
>pdb|3RHE|A Chain A, The Crystal Structure Of Nad-Dependent Benzaldehyde
Dehydrogenase From Legionella Pneumophila
Length = 148
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 505 IVIAGPNVTVGYFKNEEKTKEVYKVMLD 532
+ ++ PN+ + Y KN K++E YK +LD
Sbjct: 2 VXLSDPNLVLFYVKNPAKSEEFYKNLLD 29
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 239 ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAY 298
E VD + +VA + GSTG PK + TH + +V A I L S L
Sbjct: 180 ETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-GLNSNTRLLCA 238
Query: 299 LPLAH 303
LP H
Sbjct: 239 LPAPH 243
>pdb|1GSZ|A Chain A, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|B Chain B, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1GSZ|C Chain C, Crystal Structure Of A Squalene Cyclase In Complex With
The Potential Anticholesteremic Drug Ro48-8071
pdb|1H35|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H35|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H36|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H37|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H39|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3A|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3B|A Chain A, Squalene-Hopene Cyclase
pdb|1H3B|B Chain B, Squalene-Hopene Cyclase
pdb|1H3B|C Chain C, Squalene-Hopene Cyclase
pdb|1H3C|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1H3C|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6H|A Chain A, Squalene-Hopene Cyclase
pdb|1O6H|B Chain B, Squalene-Hopene Cyclase
pdb|1O6H|C Chain C, Squalene-Hopene Cyclase
pdb|1O6Q|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6Q|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O6R|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|A Chain A, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|B Chain B, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1O79|C Chain C, Structures Of Human Oxidosqualene Cyclase Inhibitors Bound
To A Homolgous Enzyme
pdb|1UMP|A Chain A, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|B Chain B, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1UMP|C Chain C, Geometry Of Triterpene Conversion To Pentacarbocyclic
Hopene
pdb|1SQC|A Chain A, Squalene-Hopene-Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI 417
Y +R +GSWFG WG+ L V S ++A+
Sbjct: 474 YLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAV 507
>pdb|2SQC|A Chain A, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
pdb|2SQC|B Chain B, Squalene-Hopene Cyclase From Alicyclobacillus
Acidocaldarius
Length = 631
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI 417
Y +R +GSWFG WG+ L V S ++A+
Sbjct: 474 YLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAV 507
>pdb|3SQC|A Chain A, Squalene-Hopene Cyclase
pdb|3SQC|B Chain B, Squalene-Hopene Cyclase
pdb|3SQC|C Chain C, Squalene-Hopene Cyclase
Length = 631
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 384 YARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAI 417
Y +R +GSWFG WG+ L V S ++A+
Sbjct: 474 YLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAV 507
>pdb|3P7Z|A Chain A, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
pdb|3P7Z|B Chain B, Crystal Structure Of The Neurofibromin Sec14-Ph Module
Containing The Patient Derived Mutation I1584v
Length = 276
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ 198
D ++WFV G NV+ V IY + Y+ + T + GSK L +D G+
Sbjct: 96 DFLSKWFVVFPGFAYDNVSAVYIY-NCNSWVREYTKYHERLLTGLKGSKRL-VFIDCPGK 153
Query: 199 LDTVKHVICMDANIPSAVSSVEQ 221
L +H+ +P+A ++E+
Sbjct: 154 L--AEHIEHEQQKLPAATLALEE 174
>pdb|3MDO|A Chain A, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
pdb|3MDO|B Chain B, Crystal Structure Of A Putative
Phosphoribosylformylglycinamidine Cyclo-Ligase
(Bdi_2101) From Parabacteroides Distasonis Atcc 8503 At
1.91 A Resolution
Length = 389
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMA 352
DV+ YL + E+ A V + Y L LTD ++ G VL PT
Sbjct: 215 DVFSKYLAKKY-----PESYDAAVPKELVYSGGLKLTDKIEEL--GIDAGKXVLSPTRTY 267
Query: 353 S--VPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAIN 392
+ + +LD++R + V GG K+ +R++ N
Sbjct: 268 APVIKVLLDKLRSQIHGXVHCSGGAQTKVXHFVENKRVTKDN 309
>pdb|2D4Q|A Chain A, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
pdb|2D4Q|B Chain B, Crystal Structure Of The Sec-Ph Domain Of The Human
Neurofibromatosis Type 1 Protein
Length = 257
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ 198
D ++WFV G NV+ V IY + Y+ + T + GSK L +D G+
Sbjct: 77 DFLSKWFVVFPGFAYDNVSAVYIY-NCNSWVREYTKYHERLLTGLKGSKRL-VFIDCPGK 134
Query: 199 LDTVKHVICMDANIPSAVSSVEQ 221
L +H+ +P+A ++E+
Sbjct: 135 L--AEHIEHEQQKLPAATLALEE 155
>pdb|3PG7|A Chain A, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
pdb|3PG7|B Chain B, Crystal Structure Of The H. Sapiens Nf1 Sec-Ph Domain
(Del1750 Mutant)
Length = 256
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ 198
D ++WFV G NV+ V IY + Y+ + T + GSK L +D G+
Sbjct: 77 DFLSKWFVVFPGFAYDNVSAVYIY-NCNSWVREYTKYHERLLTGLKGSKRL-VFIDCPGK 134
Query: 199 LDTVKHVICMDANIPSAVSSVEQ 221
L +H+ +P+A ++E+
Sbjct: 135 L--AEHIEHEQQKLPAATLALEE 155
>pdb|2E2X|A Chain A, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
pdb|2E2X|B Chain B, Sec14 Homology Module Of Neurofibromin In Complex With
Phosphatitylethanolamine
Length = 277
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQ 198
D ++WFV G NV+ V IY + Y+ + T + GSK L +D G+
Sbjct: 97 DFLSKWFVVFPGFAYDNVSAVYIY-NCNSWVREYTKYHERLLTGLKGSKRL-VFIDCPGK 154
Query: 199 LDTVKHVICMDANIPSAVSSVEQ 221
L +H+ +P+A ++E+
Sbjct: 155 L--AEHIEHEQQKLPAATLALEE 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,902,205
Number of Sequences: 62578
Number of extensions: 681238
Number of successful extensions: 1559
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 123
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)