Query 009160
Match_columns 541
No_of_seqs 246 out of 2029
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:10:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rix_A Luciferase, luciferin 4 100.0 2.3E-60 7.8E-65 509.2 34.9 393 57-540 19-423 (550)
2 3g7s_A Long-chain-fatty-acid-- 100.0 2.5E-59 8.5E-64 501.1 37.3 393 57-540 18-423 (549)
3 1v25_A Long-chain-fatty-acid-C 100.0 3.5E-59 1.2E-63 498.9 37.6 386 57-540 17-419 (541)
4 3ni2_A 4-coumarate:COA ligase; 100.0 2E-59 6.7E-64 500.4 35.0 388 54-540 18-418 (536)
5 3o83_A Peptide arylation enzym 100.0 5.6E-59 1.9E-63 497.6 36.2 386 54-540 26-423 (544)
6 2d1s_A Luciferase, luciferin 4 100.0 1.3E-58 4.6E-63 494.9 34.8 389 55-540 22-425 (548)
7 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.6E-58 8.8E-63 492.0 34.5 379 57-540 24-414 (539)
8 3etc_A AMP-binding protein; ad 100.0 8.5E-58 2.9E-62 491.3 37.3 388 57-540 55-459 (580)
9 3t5a_A Long-chain-fatty-acid-- 100.0 2.9E-58 9.8E-63 485.3 32.4 386 57-540 23-467 (480)
10 3r44_A Fatty acyl COA syntheta 100.0 7.7E-58 2.6E-62 485.8 35.3 380 55-540 13-397 (517)
11 4fuq_A Malonyl COA synthetase; 100.0 3.4E-58 1.2E-62 486.9 32.2 376 62-540 4-383 (503)
12 3ivr_A Putative long-chain-fat 100.0 1.7E-57 6E-62 482.6 35.3 374 57-540 5-382 (509)
13 1t5h_X 4-chlorobenzoyl COA lig 100.0 4.7E-57 1.6E-61 478.5 34.9 372 57-540 1-386 (504)
14 3c5e_A Acyl-coenzyme A synthet 100.0 1.3E-56 4.6E-61 481.3 37.1 385 57-540 37-440 (570)
15 1amu_A GRSA, gramicidin synthe 100.0 1.1E-57 3.9E-62 488.8 28.4 368 53-540 34-414 (563)
16 2v7b_A Benzoate-coenzyme A lig 100.0 4.2E-57 1.4E-61 481.9 32.6 384 57-540 23-413 (529)
17 4gr5_A Non-ribosomal peptide s 100.0 3.3E-57 1.1E-61 486.7 31.2 365 56-540 73-453 (570)
18 1pg4_A Acetyl-COA synthetase; 100.0 2.3E-56 8E-61 486.6 38.0 399 58-540 76-501 (652)
19 3e7w_A D-alanine--poly(phospho 100.0 8.1E-57 2.8E-61 477.6 32.1 367 59-540 2-383 (511)
20 3tsy_A Fusion protein 4-coumar 100.0 8.5E-57 2.9E-61 512.3 33.1 395 53-540 56-465 (979)
21 3fce_A D-alanine--poly(phospho 100.0 3.6E-57 1.2E-61 480.6 27.7 369 59-540 2-384 (512)
22 4dg8_A PA1221; ANL superfamily 100.0 1.1E-56 3.6E-61 485.6 31.7 363 55-540 24-403 (620)
23 1ry2_A Acetyl-coenzyme A synth 100.0 4.1E-56 1.4E-60 485.0 35.8 402 57-540 81-510 (663)
24 3rg2_A Enterobactin synthase c 100.0 4.2E-56 1.5E-60 482.3 34.8 384 54-540 23-418 (617)
25 3l8c_A D-alanine--poly(phospho 100.0 4.1E-56 1.4E-60 473.5 30.9 368 57-540 3-387 (521)
26 3kxw_A Saframycin MX1 syntheta 100.0 3.9E-55 1.3E-59 473.2 31.4 383 55-540 8-443 (590)
27 3nyq_A Malonyl-COA ligase; A/B 100.0 7.3E-56 2.5E-60 469.0 21.4 365 56-540 20-389 (505)
28 3gqw_A Fatty acid AMP ligase; 100.0 7E-54 2.4E-58 462.2 35.1 381 53-540 16-446 (576)
29 3ipl_A 2-succinylbenzoate--COA 100.0 7.8E-55 2.7E-59 461.4 24.9 375 59-540 2-382 (501)
30 2vsq_A Surfactin synthetase su 100.0 5E-54 1.7E-58 501.6 31.5 367 58-540 464-845 (1304)
31 3ite_A SIDN siderophore synthe 100.0 1.1E-53 3.9E-58 458.8 28.8 390 52-540 14-411 (562)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.5E-33 1.2E-37 281.6 15.0 213 249-541 36-249 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.9E-30 1.3E-34 267.1 17.3 204 245-510 80-291 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1E-29 3.4E-34 264.1 19.3 218 228-510 71-296 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 1.8E-29 6.2E-34 262.6 18.4 219 227-510 72-298 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.9E-30 1E-34 262.0 11.3 223 247-538 88-349 (369)
37 2y4o_A Phenylacetate-coenzyme 92.6 1.5 5.1E-05 44.2 13.9 107 104-211 109-223 (443)
38 4eql_A 4-substituted benzoates 92.3 0.17 5.8E-06 52.8 6.2 54 225-278 66-122 (581)
39 2y27_A Phenylacetate-coenzyme 92.2 1.7 5.7E-05 43.8 13.6 107 104-211 107-221 (437)
40 3qov_A Phenylacetate-coenzyme 91.8 1.5 5.2E-05 44.1 12.8 107 104-211 103-217 (436)
41 2d1s_A Luciferase, luciferin 4 82.1 12 0.0004 38.8 12.7 106 104-211 209-320 (548)
42 3ipl_A 2-succinylbenzoate--COA 81.5 23 0.0008 35.9 14.6 103 104-210 180-284 (501)
43 1mdb_A 2,3-dihydroxybenzoate-A 80.3 27 0.00092 35.9 14.7 105 103-211 198-309 (539)
44 3hgu_A EHPF; phenazine, antibi 77.3 10 0.00036 36.8 9.9 86 105-192 109-219 (369)
45 3o83_A Peptide arylation enzym 76.3 24 0.00083 36.3 12.8 105 103-211 207-318 (544)
46 3r44_A Fatty acyl COA syntheta 73.7 33 0.0011 34.9 13.0 103 104-211 187-295 (517)
47 3rg2_A Enterobactin synthase c 72.1 48 0.0016 34.6 14.1 105 103-211 200-313 (617)
48 3rix_A Luciferase, luciferin 4 71.6 29 0.00098 35.8 12.0 107 104-211 207-318 (550)
49 1t5h_X 4-chlorobenzoyl COA lig 70.9 23 0.00077 36.1 10.9 104 104-211 170-283 (504)
50 4gs5_A Acyl-COA synthetase (AM 70.6 21 0.00072 34.5 10.1 125 64-210 28-158 (358)
51 3e7w_A D-alanine--poly(phospho 69.8 33 0.0011 34.9 11.9 105 104-211 160-271 (511)
52 3fce_A D-alanine--poly(phospho 67.9 25 0.00085 35.8 10.5 105 104-211 161-272 (512)
53 1v25_A Long-chain-fatty-acid-C 67.4 27 0.00093 35.9 10.7 106 104-210 193-303 (541)
54 3ivr_A Putative long-chain-fat 67.3 69 0.0024 32.4 13.7 100 105-209 178-281 (509)
55 1pg4_A Acetyl-COA synthetase; 65.9 38 0.0013 35.8 11.6 105 105-211 274-389 (652)
56 3c5e_A Acyl-coenzyme A synthet 65.5 48 0.0016 34.3 12.2 105 104-211 223-333 (570)
57 3kxw_A Saframycin MX1 syntheta 65.1 38 0.0013 35.1 11.4 106 103-211 183-300 (590)
58 3ni2_A 4-coumarate:COA ligase; 62.5 34 0.0012 35.0 10.3 107 104-211 195-308 (536)
59 4dg8_A PA1221; ANL superfamily 61.2 57 0.0019 34.2 11.9 122 71-212 162-288 (620)
60 1ry2_A Acetyl-coenzyme A synth 60.9 41 0.0014 35.6 10.8 105 105-211 280-395 (663)
61 3ite_A SIDN siderophore synthe 55.7 42 0.0014 34.6 9.6 108 104-211 192-305 (562)
62 3tbh_A O-acetyl serine sulfhyd 54.2 52 0.0018 31.4 9.3 67 121-187 60-127 (334)
63 4gr5_A Non-ribosomal peptide s 54.1 57 0.002 33.6 10.4 104 104-211 231-337 (570)
64 3g7s_A Long-chain-fatty-acid-- 54.0 99 0.0034 31.6 12.1 104 104-211 197-307 (549)
65 3etc_A AMP-binding protein; ad 52.6 58 0.002 33.8 10.1 86 126-211 261-352 (580)
66 3nyq_A Malonyl-COA ligase; A/B 51.3 75 0.0026 32.1 10.5 86 104-194 172-259 (505)
67 4epl_A Jasmonic acid-amido syn 50.5 4.6 0.00016 42.0 1.1 53 225-277 71-126 (581)
68 1amu_A GRSA, gramicidin synthe 50.4 56 0.0019 33.7 9.5 103 104-211 199-304 (563)
69 3t5a_A Long-chain-fatty-acid-- 48.7 75 0.0026 31.6 10.0 104 103-210 199-321 (480)
70 4b2g_A GH3-1 auxin conjugating 46.2 7.3 0.00025 40.8 1.8 32 247-278 96-128 (609)
71 3tsy_A Fusion protein 4-coumar 43.9 82 0.0028 35.0 10.1 108 103-211 241-355 (979)
72 3vc3_A Beta-cyanoalnine syntha 43.7 1E+02 0.0034 29.5 9.4 65 123-187 77-142 (344)
73 3gqw_A Fatty acid AMP ligase; 42.4 1.2E+02 0.0042 30.9 10.7 106 104-211 193-310 (576)
74 2v7b_A Benzoate-coenzyme A lig 39.0 46 0.0016 33.9 6.6 88 104-194 200-290 (529)
75 3l8c_A D-alanine--poly(phospho 37.6 2.2E+02 0.0075 28.6 11.6 107 103-210 161-274 (521)
76 4fuq_A Malonyl COA synthetase; 34.5 1.8E+02 0.0063 29.1 10.3 102 103-210 171-278 (503)
77 4aec_A Cysteine synthase, mito 32.2 1.8E+02 0.0061 28.8 9.3 64 123-186 165-229 (430)
78 1z7w_A Cysteine synthase; tran 31.9 1.9E+02 0.0067 27.0 9.3 65 123-187 57-122 (322)
79 2vsq_A Surfactin synthetase su 31.1 1.1E+02 0.0039 35.2 8.8 121 71-211 605-731 (1304)
80 3tqh_A Quinone oxidoreductase; 30.5 1.3E+02 0.0045 28.1 7.9 76 107-186 126-204 (321)
81 2q3b_A Cysteine synthase A; py 30.1 2.3E+02 0.0078 26.4 9.5 66 121-187 56-122 (313)
82 4eez_A Alcohol dehydrogenase 1 28.8 2.9E+02 0.0099 25.9 10.2 77 107-186 137-216 (348)
83 2egu_A Cysteine synthase; O-ac 28.0 2.4E+02 0.0084 26.1 9.2 65 122-187 55-120 (308)
84 4h1h_A LMO1638 protein; MCCF-l 27.4 1.8E+02 0.0063 27.5 8.2 60 127-186 8-86 (327)
85 2pqm_A Cysteine synthase; OASS 26.7 2.2E+02 0.0076 27.0 8.8 64 123-187 69-133 (343)
86 3sr3_A Microcin immunity prote 26.3 2E+02 0.0067 27.4 8.2 60 127-186 9-87 (336)
87 3ju7_A Putative PLP-dependent 26.1 1.7E+02 0.0056 28.2 7.9 59 123-184 70-135 (377)
88 1zsy_A Mitochondrial 2-enoyl t 25.9 1.8E+02 0.006 27.7 8.0 64 122-185 158-223 (357)
89 3ezx_A MMCP 1, monomethylamine 24.9 1E+02 0.0036 27.1 5.6 75 303-440 105-195 (215)
90 3tla_A MCCF; serine protease, 24.3 2.1E+02 0.0072 27.6 8.0 60 127-186 39-117 (371)
91 3dwg_A Cysteine synthase B; su 24.1 3E+02 0.01 25.8 9.1 64 123-187 64-128 (325)
92 3l6b_A Serine racemase; pyrido 24.0 1.7E+02 0.0059 27.8 7.4 57 131-188 76-132 (346)
93 2ayi_A Aminopeptidase T; metal 23.6 2.4E+02 0.0081 27.7 8.3 49 113-161 5-57 (408)
94 1y80_A Predicted cobalamin bin 21.8 3.7E+02 0.013 23.1 8.7 56 132-187 89-148 (210)
95 4e5s_A MCCFLIKE protein (BA_56 20.8 2.3E+02 0.0078 26.9 7.4 60 127-186 8-86 (331)
96 3qwb_A Probable quinone oxidor 20.7 4.7E+02 0.016 24.2 9.8 56 127-185 145-200 (334)
97 3goh_A Alcohol dehydrogenase, 20.6 1.7E+02 0.0059 27.1 6.6 73 106-183 115-190 (315)
98 4b7c_A Probable oxidoreductase 20.6 3E+02 0.01 25.7 8.4 60 124-185 143-202 (336)
99 3two_A Mannitol dehydrogenase; 20.2 3E+02 0.01 25.9 8.3 73 107-183 150-225 (348)
100 2hcy_A Alcohol dehydrogenase 1 20.1 5.3E+02 0.018 24.0 10.3 61 121-184 160-220 (347)
No 1
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=2.3e-60 Score=509.23 Aligned_cols=393 Identities=22% Similarity=0.285 Sum_probs=325.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|.++++++|+++|++... ++. ..+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 19 ~~tl~~~l~~~a~~~p~~~a~~a~~----------~~~--------~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 80 (550)
T 3rix_A 19 DGTAGEQLHKAMKRYALVPGTIAFT----------DAH--------IEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVV 80 (550)
T ss_dssp CSCHHHHHHHHHHHHHTSTTCEEEE----------ETT--------TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHhCCCCceEEEee----------ecC--------CCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 4799999999999999999986311 110 1147999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.+..++.++......
T Consensus 81 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 159 (550)
T 3rix_A 81 CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQ- 159 (550)
T ss_dssp ECSSCTTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBT-
T ss_pred EcCCcccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCcccc-
Confidence 9999999999999999999999999999999999999999999999999998888887777778888888876543211
Q ss_pred ccccccCCeEEeeHHHHHhcccCC-----CC-CCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CC
Q 009160 217 SSVEQSGRWKITSFADVQILGREN-----PV-DADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PD 288 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~ 288 (541)
...++.++....... .. +.....++++++|+|||||||.||||+++|+++++.+......+ ..
T Consensus 160 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~ 230 (550)
T 3rix_A 160 ---------GFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ 230 (550)
T ss_dssp ---------TBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCC
T ss_pred ---------CcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhcccc
Confidence 123455555433221 11 11223468899999999999999999999999999887766542 26
Q ss_pred CCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGV 365 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 365 (541)
+.++|++++.+|++|++++...+.++..|+++++ +++..+++. ++++++|+++++|+++..+.+..
T Consensus 231 ~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~ 299 (550)
T 3rix_A 231 IIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRS-----------LQDYKIQSALLVPTLFSFFAKST 299 (550)
T ss_dssp CCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCSEEEECHHHHHHHHHCC
T ss_pred CCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHcCCeEEEeCcHHHHHHHhCc
Confidence 7889999999999999999888889999999999 566667776 99999999999999999887632
Q ss_pred HHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhC
Q 009160 366 RKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLG 445 (541)
Q Consensus 366 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g 445 (541)
.... ...++||.+++||+++++++.+++++.++
T Consensus 300 ~~~~-----------------------------------------------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~ 332 (550)
T 3rix_A 300 LIDK-----------------------------------------------YDLSNLHEIASGGAPLSKEVGEAVAKRFH 332 (550)
T ss_dssp GGGG-----------------------------------------------SCCTTCCEEEECSSCCCHHHHHHHHHHTT
T ss_pred cccc-----------------------------------------------cCcccccEEEEecCCCCHHHHHHHHHHcC
Confidence 1100 01148999999999999999999999998
Q ss_pred Cc-ceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 446 AP-IGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 446 ~~-v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
.. ++|.||+||+++.++.......+.+++|+|+|+++++|+|+++++.+ +.|+.|||+|+|+++++|||++|+.|+
T Consensus 333 ~~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 409 (550)
T 3rix_A 333 LPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTL---GVNQRGELCVRGPMIMSGYVNNPEATN 409 (550)
T ss_dssp CSCCEEEEECGGGSSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCHHHHH
T ss_pred CCccccccCcCccccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCC---CCCCCeEEEEeCCCcchhhcCChhhhh
Confidence 75 89999999999888777766677899999999999999996667665 478999999999999999999999999
Q ss_pred hhhccCCCceEEcccc
Q 009160 525 EVYKVMLDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~dGw~~~~~~ 540 (541)
+.| +.||||+|+|+
T Consensus 410 ~~~--~~~g~~~TGDl 423 (550)
T 3rix_A 410 ALI--DKDGWLHSGDI 423 (550)
T ss_dssp HHB--CTTSCEEEEEE
T ss_pred hhc--CCCCCeecCcE
Confidence 999 89999999885
No 2
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.5e-59 Score=501.08 Aligned_cols=393 Identities=23% Similarity=0.303 Sum_probs=328.2
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+. ++. + ..+..+++||+||.++++++|++|.+.|+++||+|+|
T Consensus 18 ~~~l~~~l~~~a~~~p~~~A~~~~-----------~~~-~---~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 82 (549)
T 3g7s_A 18 KISLADRIDAAAEKFGEKTAIISA-----------EPK-F---PSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGV 82 (549)
T ss_dssp CCCTTHHHHHHHHHHTTSEEEEEE-----------SSC-C---CCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEeC-----------CCc-c---cccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 478999999999999999999874 210 0 0122358999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+........ +..++..+..
T Consensus 83 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~----- 156 (549)
T 3g7s_A 83 CIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG-VERVFVVGGE----- 156 (549)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC-CCEEEEETCS-----
T ss_pred ECCCCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC-CcEEEEeCCC-----
Confidence 9999999999999999999999999999999999999999999999999988877777665544 4556655431
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
..+++++...+...........++|+++|+|||||||.||||+++|+++++.+......+ ++.++|+++
T Consensus 157 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~ 225 (549)
T 3g7s_A 157 ----------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-GLSHMDTIV 225 (549)
T ss_dssp ----------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-CCCTTCEEE
T ss_pred ----------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-CCCCCCEEE
Confidence 123556655443322222223348999999999999999999999999999999888888 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|.+++...+.++..|+++++ +++..+.+. ++++++|+++++|+++..+.+........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-- 292 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAEN-----------IEKYKGTFSWAVPPALNVLVNTLESSNKT-- 292 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHSCCC--
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHH-----------HHHhCCeEEEeCCHHHHHHHhhhhhhccc--
Confidence 99999999998888888999999988 677777777 99999999999999999998764332100
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH----hC---C
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC----LG---A 446 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~----~g---~ 446 (541)
...+++|.+++||+++++++.+.+++. ++ +
T Consensus 293 -------------------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~ 329 (549)
T 3g7s_A 293 -------------------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRL 329 (549)
T ss_dssp -------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTC
T ss_pred -------------------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccc
Confidence 001389999999999999999999887 56 8
Q ss_pred cceeccCcccccccccccCCCC-CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 447 PIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
+++|.||+||++.+++...... ...+++|+|+++++++|+|+++++.++ .|+.|||+|+|+++++|||++|+.|++
T Consensus 330 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~ 406 (549)
T 3g7s_A 330 RHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELG---VGESGEIVIRGPNIFKGYWKREKENQE 406 (549)
T ss_dssp EEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEEC---TTCCEEEEEESTTSCSEETTCTTGGGT
T ss_pred cccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCC---CCCceEEEEECcchhhhhCCChhhhhh
Confidence 9999999999998777655443 456899999999999999977887754 889999999999999999999999999
Q ss_pred hhccCCCc--eEEcccc
Q 009160 526 VYKVMLDR--FMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dG--w~~~~~~ 540 (541)
.|..|.|| ||+|+|+
T Consensus 407 ~f~~~~~g~~~~~TGDl 423 (549)
T 3g7s_A 407 CWWYDEKGRKFFRTGDV 423 (549)
T ss_dssp SEEECTTCCEEEEEEEE
T ss_pred hhhccCCCCceEccCcE
Confidence 98656788 9999885
No 3
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.5e-59 Score=498.85 Aligned_cols=386 Identities=24% Similarity=0.325 Sum_probs=318.9
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+.+ + +..+.+||+||.++++++|++|+++|+++||+|++
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~~----------~---------~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 77 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRLH----------T---------GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVAT 77 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEECT----------T---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHhCCCceEEEEec----------C---------CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998521 1 12357999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.++.++.+++....
T Consensus 78 ~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (541)
T 1v25_A 78 LGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPE-- 155 (541)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCT--
T ss_pred EcCCcHHHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCc--
Confidence 999999999999999999999999999999999999999999999999998877777766666777777776643210
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHH--HhhCCCCCCCcE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAV--MTIVPDLGSKDV 294 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~ 294 (541)
...+++++...... .....++++++|+|||||||.||||+++|+++++..... ...+ .++++|+
T Consensus 156 ---------~~~~~~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~d~ 221 (541)
T 1v25_A 156 ---------GYLAYEEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-ALSEKDV 221 (541)
T ss_dssp ---------TCEEHHHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-CCCTTCE
T ss_pred ---------ccccHHHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-cCCCCCE
Confidence 11345555432211 134567899999999999999999999999998776653 2344 6889999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|++++...+.+++.|+++++. ++..+++. ++++++|+++++|+++..+.+.......
T Consensus 222 ~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 290 (541)
T 1v25_A 222 VLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVEL-----------FDGEGVTFTAGVPTVWLALADYLESTGH 290 (541)
T ss_dssp EEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHHHHHHTC
T ss_pred EEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHH-----------HHhcCeeEEecchHHHHHHHhhhhccCC
Confidence 99999999999987778889999999983 55566666 9999999999999999999875432111
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
..+++|.+++||+++++++.+++ +.+|++++|
T Consensus 291 -----------------------------------------------~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~ 322 (541)
T 1v25_A 291 -----------------------------------------------RLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQ 322 (541)
T ss_dssp -----------------------------------------------CCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEE
T ss_pred -----------------------------------------------cchhccEEEECCCCCCHHHHHHH-HHhCCceee
Confidence 11389999999999999999999 667999999
Q ss_pred ccCcccccccccccCCCC-----------CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 451 GYGLTETCAGGTFSEVDD-----------SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~-----------~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
.||+||++..++...... ...+++|+|+|+++++|+| ++++.++ .+.++.|||+|+||+++.|||++
T Consensus 323 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~-~~~~~~GEl~v~g~~v~~GY~~~ 400 (541)
T 1v25_A 323 GYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVP-KDGKALGEVQLKGPWITGGYYGN 400 (541)
T ss_dssp EEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCC-SSSCCCEEEEEESTTSBSSCBTC
T ss_pred cccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEEC-CCCCCCC-CCCCcceEEEEeCcchhccccCC
Confidence 999999988766553321 1247899999999999999 7777654 22246899999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| +.||||+|+|+
T Consensus 401 p~~t~~~f--~~~g~~~TGDl 419 (541)
T 1v25_A 401 EEATRSAL--TPDGFFRTGDI 419 (541)
T ss_dssp HHHHHTTB--CTTSCEEEEEE
T ss_pred hhhhhhhc--cCCCCeEcCCE
Confidence 99999999 77999999985
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2e-59 Score=500.44 Aligned_cols=388 Identities=23% Similarity=0.309 Sum_probs=319.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
.+...|+.++|.++++++|+++|+++.+ +|+ .+||+||.++++++|++|.+.|+++||+
T Consensus 18 ~p~~~~l~~~l~~~a~~~p~~~a~~~~~----------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 76 (536)
T 3ni2_A 18 IPKNLPLHSYVLENLSNHSSKPCLINGA----------NGD-----------VYTYADVELTARRVASGLNKIGIQQGDV 76 (536)
T ss_dssp CCSSCCHHHHHTTTGGGSTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCcHHHHHHHHhhcCCCceEEEECC----------CCC-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 3455789999999999999999998621 233 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+.+..... .. .++.++....
T Consensus 77 V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 154 (536)
T 3ni2_A 77 IMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DV-KVMCVDSAPD 154 (536)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TC-EEEESSCCCT
T ss_pred EEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-Cc-eEEEecCCCC
Confidence 999999999999999999999999999999999999999999999999999998877766654322 12 3555543221
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC---CCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---PDLG 290 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~ 290 (541)
...+++++...... ..+.....++|+++|+|||||||.||||+++|+++++.+....... ..+.
T Consensus 155 ------------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~ 221 (536)
T 3ni2_A 155 ------------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFH 221 (536)
T ss_dssp ------------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCC
T ss_pred ------------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCC
Confidence 12345555543222 2233456789999999999999999999999999999877765421 1578
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
++|++++.+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|++.++|+++..+.+...
T Consensus 222 ~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 290 (536)
T 3ni2_A 222 SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGL-----------IEKYKVSIAPVVPPVMMSIAKSPD 290 (536)
T ss_dssp TTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTCSC
T ss_pred CCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHH-----------HHHhCCeEEEccHHHHHHHHhCcc
Confidence 9999999999999999876 6778999999998 456666666 999999999999999998875321
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-C
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-G 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g 445 (541)
... ...++||.+++||+++++++.+++++.+ +
T Consensus 291 ~~~-----------------------------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 323 (536)
T 3ni2_A 291 LDK-----------------------------------------------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQ 323 (536)
T ss_dssp GGG-----------------------------------------------SCCTTCCEEEEESSCCCHHHHHHHHHHCTT
T ss_pred ccc-----------------------------------------------CCCccceEEEECCCCCCHHHHHHHHHHCCC
Confidence 100 0114899999999999999999999998 8
Q ss_pred CcceeccCccccccccccc-----CCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 446 APIGQGYGLTETCAGGTFS-----EVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~-----~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
++++|.||+||++.+++.. ...+.+.+++|+|+++++++|+|+++++.+ +.|+.|||+|+|+++++|||++|
T Consensus 324 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p 400 (536)
T 3ni2_A 324 ARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL---PRNQPGEICIRGDQIMKGYLNDP 400 (536)
T ss_dssp SEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBC---CTTCCEEEEEESTTSCSEETTCH
T ss_pred CCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCC---CCCCccEEEEeCcccchhhcCCh
Confidence 9999999999998765443 122346689999999999999996667665 48899999999999999999999
Q ss_pred hhhHhhhccCCCceEEcccc
Q 009160 521 EKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~~d~dGw~~~~~~ 540 (541)
+.|++.| +.||||+|+|+
T Consensus 401 ~~t~~~~--~~~g~~~TGDl 418 (536)
T 3ni2_A 401 EATSRTI--DKEGWLHTGDI 418 (536)
T ss_dssp HHHHHHB--CTTSCEEEEEE
T ss_pred hHHHhhc--cCCCceEcccE
Confidence 9999999 89999999985
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=5.6e-59 Score=497.62 Aligned_cols=386 Identities=19% Similarity=0.215 Sum_probs=320.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
+....|+.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|+++|+++||+
T Consensus 26 ~~~~~tl~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~ 82 (544)
T 3o83_A 26 YWIDQPLTRILTVGVQSHPHSLAIIC------------GER-----------QLSYIELDRLSTNLATRLAEKGLGKGDT 82 (544)
T ss_dssp SCCCCCTTHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEc------------CCC-----------ceeHHHHHHHHHHHHHHHHHCCCCCCCE
Confidence 34567999999999999999999986 343 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEe
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 208 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.... ..+..+.........++..
T Consensus 83 V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (544)
T 3o83_A 83 ALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILML 162 (544)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEE
T ss_pred EEEECCCCHHHHHHHHHHHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999987653 3334444445556666666
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
+..... ..+.++.........+.....++|+++|+|||||||.||||+++|+++.+.+......+ +
T Consensus 163 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-~ 228 (544)
T 3o83_A 163 NHQATD-------------FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-G 228 (544)
T ss_dssp TCCTTS-------------EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-T
T ss_pred cCCccc-------------cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-C
Confidence 543211 23444444333333333556789999999999999999999999999999999988888 8
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
++++|++++.+|++|.+++.. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+
T Consensus 229 ~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSI-----------IQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred CCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHHCCCEEEechHHHHHHHh
Confidence 999999999999999999874 7788999999999 556666666 999999999999999999887
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
....... + .++||.+++||+++++++.+++++.
T Consensus 298 ~~~~~~~----------------~-------------------------------~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 298 KAAQYKD----------------Q-------------------------------IQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHTTTHH----------------H-------------------------------HTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred chhhccc----------------c-------------------------------CCcceEEEEcCCCCCHHHHHHHHHH
Confidence 5321110 0 1389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCC-CCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+|++++|.||+||++...+...... ...+++|+|+ ++++++|+| ++++.+ ++|+.|||+|+|+++++|||++|+
T Consensus 331 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~ 406 (544)
T 3o83_A 331 LNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVD-EQYREV---PEGEIGMLATRGPYTFCGYYQSPE 406 (544)
T ss_dssp HCSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSCCTTCHH
T ss_pred hCCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEEC-CCCCCC---CCCCeeEEEEecCCcchhhcCChh
Confidence 9999999999999876544332211 2347899996 899999999 777765 488999999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.|++.| +.||||+|+|+
T Consensus 407 ~t~~~f--~~~g~~~TGDl 423 (544)
T 3o83_A 407 HNSQVF--DEDNYYYSGDL 423 (544)
T ss_dssp HHHHHB--CTTCCEEEEEE
T ss_pred hhhhhC--CCCCCeEcCCE
Confidence 999999 88999999985
No 6
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.3e-58 Score=494.91 Aligned_cols=389 Identities=23% Similarity=0.303 Sum_probs=318.9
Q ss_pred CCCCCHHH-HHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 55 EGISTLAE-LFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 55 ~~~~tl~~-~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
+...|+.+ +|.++++++ +++|+.+.. ++ +.+||+||.++++++|++|++.|+++||+
T Consensus 22 p~~~~l~~~~l~~~~~~~-~~~A~~~~~----------~~-----------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~ 79 (548)
T 2d1s_A 22 EGSAGTQLRKYMERYAKL-GAIAFTNAV----------TG-----------VDYSYAEYLEKSCCLGKALQNYGLVVDGR 79 (548)
T ss_dssp SSCHHHHHHHHHHHHHHH-TCEEEEETT----------TC-----------CEEEHHHHHHHHHHHHHHHHHHTCCTTCE
T ss_pred CCcCcHHHHHHHhhhccc-CCceEEEcC----------CC-----------CEeeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 34458999 899999999 999997520 22 37999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCc
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 213 (541)
|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++....++.++....
T Consensus 80 V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (548)
T 2d1s_A 80 IALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVD 159 (548)
T ss_dssp EEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSC
T ss_pred EEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999887776665545554566776654311
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCCCCC------CCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh--
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDADYP------VSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI-- 285 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-- 285 (541)
. ....+++++.........+.... .++|+++|+|||||||.||||+++|+++++.+......
T Consensus 160 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~ 229 (548)
T 2d1s_A 160 Y----------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIY 229 (548)
T ss_dssp B----------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTT
T ss_pred c----------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhh
Confidence 0 01234666654332110111111 23899999999999999999999999999988887665
Q ss_pred -CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHH
Q 009160 286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDR 360 (541)
Q Consensus 286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 360 (541)
+ +++++|++++.+|++|++++.. ++.++ .|+++++ +++..+++. ++++++|+++++|+++..
T Consensus 230 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~ 296 (548)
T 2d1s_A 230 GN-QVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKT-----------LQDYKCTSVILVPTLFAI 296 (548)
T ss_dssp SC-CCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHH-----------HHHTTEEEEEECHHHHHH
T ss_pred cc-CCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHH-----------HHHcCCcEEEecHHHHHH
Confidence 4 7789999999999999999887 45556 9999988 566667776 999999999999999998
Q ss_pred HHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHH
Q 009160 361 VRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFI 440 (541)
Q Consensus 361 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~ 440 (541)
+.+..... ....+++|.+++||+++++++.+++
T Consensus 297 l~~~~~~~-----------------------------------------------~~~l~~lr~i~~gG~~l~~~~~~~~ 329 (548)
T 2d1s_A 297 LNKSELLN-----------------------------------------------KYDLSNLVEIASGGAPLSKEVGEAV 329 (548)
T ss_dssp HHHCSCGG-----------------------------------------------GSCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhCcccc-----------------------------------------------cccccceeEEEEcCccCCHHHHHHH
Confidence 87521100 0011389999999999999999999
Q ss_pred HHHh-CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCC
Q 009160 441 NICL-GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKN 519 (541)
Q Consensus 441 ~~~~-g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~ 519 (541)
++.+ +++++|.||+||++..++.......+.+++|+|+|+++++|+|+++++.++ +|+.|||+|+|+++++|||++
T Consensus 330 ~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~---~g~~GEl~v~g~~v~~GY~~~ 406 (548)
T 2d1s_A 330 ARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLG---PNRRGEVCVKGPMLMKGYVNN 406 (548)
T ss_dssp HHHTTCSCCEEEEECGGGSSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCSEETTC
T ss_pred HHHcCCCceeeccccccccceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCC---CCCCeEEEECCHHHhhhhcCC
Confidence 9998 688999999999988776654444567899999999999999966777654 789999999999999999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| +.||||+|+|+
T Consensus 407 ~~~t~~~f--~~~g~~~TGDl 425 (548)
T 2d1s_A 407 PEATKELI--DEEGWLHTGDI 425 (548)
T ss_dssp HHHHHHHB--CTTSCEEEEEE
T ss_pred hHHhhhcc--cCCcEEEccCE
Confidence 99999999 88999999985
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.6e-58 Score=491.97 Aligned_cols=379 Identities=22% Similarity=0.291 Sum_probs=311.4
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+ .+ +.+||+||.++++++|++|.++|+++||+|+|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~------------~~-----------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 80 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITC------------GN-----------THWSYRELDTRADRLAAGFQKLGIQQKDRVVV 80 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CCCHHHHHHHHHHHCCCCEEEEe------------CC-----------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 33 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+..+...++.++.++..++.
T Consensus 81 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (539)
T 1mdb_A 81 QLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEA 160 (539)
T ss_dssp CCCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCC
T ss_pred EcCCcHHHHHHHHHHHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCc
Confidence 99999999999999999999999999999999999999999999999987642 2333333445556666654432
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
.. +.++.... ..+.......++|+++|+|||||||.||||+++|+++++.+......+ ++++
T Consensus 161 ~~----------------~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-~~~~ 222 (539)
T 1mdb_A 161 EE----------------FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-WLDH 222 (539)
T ss_dssp TT----------------SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-TCCT
T ss_pred cc----------------hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-CCCC
Confidence 10 11111111 111122445789999999999999999999999999999988887777 8899
Q ss_pred CcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 292 KDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 292 ~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
+|++++.+|++|.+++.. ++.+|+.|+++++ +++..+++. ++++++|+++++|+++..+.+...
T Consensus 223 ~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 291 (539)
T 1mdb_A 223 STVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPL-----------IEREKVTITALVPPLAMVWMDAAS 291 (539)
T ss_dssp TCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHH-----------HHHHTCSEEEECHHHHHHHHHHHH
T ss_pred CCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHH-----------HHHcCCeEEEccHHHHHHHHhCcc
Confidence 999999999999999874 7888999999998 456666666 999999999999999999887543
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
.... ..++||.+++||+++++++.+++++.+|+
T Consensus 292 ~~~~-----------------------------------------------~l~~lr~~~~gG~~l~~~~~~~~~~~~~~ 324 (539)
T 1mdb_A 292 SRRD-----------------------------------------------DLSSLQVLQVGGAKFSAEAARRVKAVFGC 324 (539)
T ss_dssp HCCC-----------------------------------------------CCTTCCEEEEESSCCCHHHHTTHHHHTCS
T ss_pred ccCC-----------------------------------------------CccceeEEEEcCCCCCHHHHHHHHHHhCC
Confidence 2111 11389999999999999999999999999
Q ss_pred cceeccCcccccccccccCCC-CCCCCCcCCCcCC-eEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 447 PIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPC-SFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~-~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
+++|.||+||++...+..... ....+++|+|+++ .+++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|+
T Consensus 325 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~ 400 (539)
T 1mdb_A 325 TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWD-DHDRDV---KPGETGHLLTRGPYTIRGYYKAEEHNA 400 (539)
T ss_dssp EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTSCSSCTTCHHHHH
T ss_pred cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEEC-CCCCCC---cCCCcceEEeeCcccchhhcCChhhhh
Confidence 999999999965433321111 1234789999975 5899999 677664 488999999999999999999999999
Q ss_pred hhhccCCCceEEcccc
Q 009160 525 EVYKVMLDRFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~dGw~~~~~~ 540 (541)
+.| +.||||+|+|+
T Consensus 401 ~~f--~~~g~~~TGDl 414 (539)
T 1mdb_A 401 ASF--TEDGFYRTGDI 414 (539)
T ss_dssp HHB--CTTSCEEEEEE
T ss_pred hhc--cCCCCeecCce
Confidence 999 78999999985
No 8
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.5e-58 Score=491.28 Aligned_cols=388 Identities=15% Similarity=0.168 Sum_probs=319.1
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
.+.++++|+++|+++|+++|+.+.+ ++ ++.+.+||+||.++++++|++|+++|+++||+|+|
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~---------~~---------g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l 116 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCD---------DY---------GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVML 116 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEE---------SS---------SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEc---------CC---------CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3445699999999999999998742 01 23468999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch--hHHHHhhcCCCCc-cEEEEecCCCc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL--KKLVDLSGQLDTV-KHVICMDANIP 213 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~-~~ii~~~~~~~ 213 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+.. +.+.+....++.+ ..++.++....
T Consensus 117 ~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (580)
T 3etc_A 117 TLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVL 196 (580)
T ss_dssp ECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCC
T ss_pred EcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccc
Confidence 99999999999999999999999999999999999999999999999987754 5555554444444 45565553311
Q ss_pred cccccccccCCeEEeeHHHHHhcccCCCCCC---CCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGRENPVDA---DYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
. ...++.+...........+ ....++|+++|+|||||||.||||+++|.++++.+......+ .+.
T Consensus 197 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-~~~ 264 (580)
T 3etc_A 197 E-----------GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-NVE 264 (580)
T ss_dssp T-----------TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-CCC
T ss_pred c-----------ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-CCC
Confidence 1 1244555554333222112 356789999999999999999999999999998877766666 888
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
++|++++.+|++|..+++. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~ 333 (580)
T 3etc_A 265 DDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEK-----------ASKYGVTTFCAPPTIYRFLIKE 333 (580)
T ss_dssp TTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHTS
T ss_pred CCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH-----------HHHHCCeEEEccHHHHHHHHhc
Confidence 9999999999999988886 6778999999987 455566666 9999999999999999988652
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
... ....++||.+++||+++++++.++|++.+
T Consensus 334 ~~~------------------------------------------------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 365 (580)
T 3etc_A 334 DLS------------------------------------------------HYNFSTLKYAVVAGEPLNPEVFNRFLEFT 365 (580)
T ss_dssp CC---------------------------------------------------CCTTCCEEEECSSCCCHHHHHHHHHHH
T ss_pred ccc------------------------------------------------cCCCccceEEEEccCCCCHHHHHHHHHHh
Confidence 100 01124899999999999999999999999
Q ss_pred CCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc-----CCcccccCCC
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG-----PNVTVGYFKN 519 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g-----~~v~~GY~~~ 519 (541)
|++++|+||+||++..++.....+.+.+++|+|+|+++++|+| ++|+.+ ++|+.|||+|+| +++++|||++
T Consensus 366 g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd-~~g~~~---~~g~~GEl~v~~~~g~~~~~~~gY~~~ 441 (580)
T 3etc_A 366 GIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMD-RDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGKD 441 (580)
T ss_dssp SCCCEEEECCTTSSCCEECCTTSCCCTTCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEECTTCCCTTCCCEETTC
T ss_pred CCeEecccccccccceeecCCCCCCCCCccccCCCCCEEEEEC-CCCCCC---CCCCceEEEEecCCCCCCeeeccccCC
Confidence 9999999999999887776665667789999999999999999 677765 488999999997 7899999999
Q ss_pred chhhHhhhccCCCceEEcccc
Q 009160 520 EEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 520 ~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|+.|++.| .||||+|+|+
T Consensus 442 p~~t~~~f---~~gwy~TGDl 459 (580)
T 3etc_A 442 PERTEETW---HDGYYHTGDM 459 (580)
T ss_dssp HHHHHHHE---ETTEEEEEEE
T ss_pred HhHHHhhc---CCCEEecCcE
Confidence 99999999 4788888874
No 9
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.9e-58 Score=485.35 Aligned_cols=386 Identities=19% Similarity=0.188 Sum_probs=299.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++|+++|+.+.+.. ++. .+..+.+||+||.++++++|++|++.|+ +||+|+|
T Consensus 23 ~~tl~~~l~~~a~~~pd~~Al~~~~~~--------~~~------~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i 87 (480)
T 3t5a_A 23 VRSLPAALRACARLQPHDPAFTFMDYE--------QDW------DGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVI 87 (480)
T ss_dssp -CCHHHHHHHHHHHSTTSEEEEEEETT--------TCT------TCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEE
T ss_pred cccHHHHHHHHHHhCCCCceEEEeccc--------CCC------CCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 468999999999999999999875311 111 2334689999999999999999999996 9999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccC---CCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc--cEEEEecCC
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYA---SLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV--KHVICMDAN 211 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~--~~ii~~~~~ 211 (541)
+++|+++|+++++||+++|+++||+++ .++.+++.+++++++++++|++.+..+.+.+.....+.. ..++.++..
T Consensus 88 ~~~n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (480)
T 3t5a_A 88 SAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLL 167 (480)
T ss_dssp ECCSSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGS
T ss_pred EcCCcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEeccc
Confidence 999999999999999999999999999 788999999999999999999998877766654333221 123332211
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCC
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGS 291 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 291 (541)
. . ............++++++|+|||||||.||||++||+++++.+......+ .+..
T Consensus 168 ~----------------------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~ 223 (480)
T 3t5a_A 168 D----------------------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-FADT 223 (480)
T ss_dssp C----------------------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-CTTT
T ss_pred c----------------------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-cccc
Confidence 1 0 00111223456788999999999999999999999999999988887776 6666
Q ss_pred ------CcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 292 ------KDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 292 ------~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+|++++.+|++|++++.. ++.+++.|+++++. ++..+++. ++++++| +.++|++
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t-~~~~p~~ 291 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHL-----------MASDFHA-FSAAPNF 291 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHH-----------TTSSSEE-EEEECHH
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHH-----------HHhhcee-EeeChHH
Confidence 999999999999999765 67889999999984 55555555 9999999 8899998
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+..+.......... .....++||.+++||+++++++.
T Consensus 292 ~~~l~~~~~~~~~~-------------------------------------------~~~~l~~lr~i~~gG~~l~~~~~ 328 (480)
T 3t5a_A 292 AFELAARRTTDDDM-------------------------------------------AGRDLGNILTILSGSERVQAATI 328 (480)
T ss_dssp HHHHHHHHCCTGGG-------------------------------------------TTCCCTTCCEEEECCTTCCHHHH
T ss_pred HHHHHHhhcCcccc-------------------------------------------cccchhhhheeeecCCcCCHHHH
Confidence 88876542111000 00112489999999999999999
Q ss_pred HHHHHHhC------CcceeccCcccccccccccCCCC-------------------------CCCCCcCCCcCCeEEEEE
Q 009160 438 RFINICLG------APIGQGYGLTETCAGGTFSEVDD-------------------------SSVGRVGAPLPCSFIKLI 486 (541)
Q Consensus 438 ~~~~~~~g------~~v~~~YG~TE~~~~~~~~~~~~-------------------------~~~~~vG~p~~~~ev~iv 486 (541)
+++++.++ +.++|.||+||++..++...... .+.+++|+|++ ++++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~iv 407 (480)
T 3t5a_A 329 KRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIV 407 (480)
T ss_dssp HHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEE
T ss_pred HHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEE
Confidence 99999874 47999999999998876654432 12368999999 999999
Q ss_pred ecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhc---------cCCCceEEcccc
Q 009160 487 DWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYK---------VMLDRFMLMVAL 540 (541)
Q Consensus 487 d~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~---------~d~dGw~~~~~~ 540 (541)
|.++++.+ +.|+.|||+|+|+++++|||++|++|+++|. .+.||||+|+|+
T Consensus 408 d~~~g~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl 467 (480)
T 3t5a_A 408 DSDTCIEC---PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467 (480)
T ss_dssp ETTTTEEC---CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred cCCCCcCC---CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence 95446664 4789999999999999999999999999991 016789999985
No 10
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.7e-58 Score=485.81 Aligned_cols=380 Identities=23% Similarity=0.274 Sum_probs=312.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
+...|+.++|+++++++|+++|+.+. + ..+.+||+||.++++++|++|.++|+++||+|
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~------------~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V 71 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP------------S---------TDVRMTYAQMNALANRCADVLTALGIAKGDRV 71 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG------------G---------GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC------------C---------cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEE
Confidence 45679999999999999999999862 1 12479999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++....+.+..+....+....++....
T Consensus 72 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (517)
T 3r44_A 72 ALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG---- 147 (517)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----
T ss_pred EEEcCCCHHHHHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----
Confidence 9999999999999999999999999999999999999999999999999999887777665544333222221110
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
..++.+..... ....+.....++|+++|+|||||||.||||+++|+++.+.+......+ +++++|+
T Consensus 148 ------------~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 213 (517)
T 3r44_A 148 ------------ADSLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-DVRYRDR 213 (517)
T ss_dssp ------------HHHHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-CCCTTCE
T ss_pred ------------cccHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-CCCCCCE
Confidence 01233333222 122233456789999999999999999999999999999999988888 8999999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
+++.+|++|++++...+.++..|+++++ +++..+++. ++++++|++.++|+++..+.+....
T Consensus 214 ~l~~~p~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~---- 278 (517)
T 3r44_A 214 LLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSL-----------IVEERVCIGGAVPAILNFMRQVPEF---- 278 (517)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHHSHHH----
T ss_pred EEEeCchHHHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHH-----------HHHhCCeEEEeHHHHHHHHHhCccc----
Confidence 9999999999999886666669999988 566667776 9999999999999999988764221
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceec
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQG 451 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~ 451 (541)
.....+++|.+++||+++++++.+.+++. +++++|.
T Consensus 279 -------------------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~ 314 (517)
T 3r44_A 279 -------------------------------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQG 314 (517)
T ss_dssp -------------------------------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEE
T ss_pred -------------------------------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEe
Confidence 11122489999999999999999999887 9999999
Q ss_pred cCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 452 YGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 452 YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
||+||+++.++..... ..+.+++|+|+++++++|+| +++...+ .| .|||+|+|+++++|||++|+.|++.|
T Consensus 315 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~~~~~~---~g-~GEl~v~g~~v~~GY~~~p~~t~~~f-- 387 (517)
T 3r44_A 315 YALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRG-DDGVIRE---HG-EGEVVIKSDILLKEYWNRPEATRDAF-- 387 (517)
T ss_dssp EECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEEC-TTSCEES---SE-EEEEEEEETTSCSEETTCHHHHHHTE--
T ss_pred ecccccccceeecCCccccccCCCCCcCCCCeEEEEEC-CCCCCCC---CC-CeEEEEeCcchhhhhCCChhhhHhhh--
Confidence 9999998877655443 34568999999999999999 6766544 55 79999999999999999999999999
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 388 -~~g~~~TGDl 397 (517)
T 3r44_A 388 -DNGWFRTGDI 397 (517)
T ss_dssp -ETTEEEEEEE
T ss_pred -cCCCEeccee
Confidence 5788888874
No 11
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.4e-58 Score=486.90 Aligned_cols=376 Identities=25% Similarity=0.353 Sum_probs=307.4
Q ss_pred HHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc
Q 009160 62 ELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR 141 (541)
Q Consensus 62 ~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns 141 (541)
++|.+.++++|+++|+.... .+|+ ++||+||.++++++|++|.++|+++||+|+|+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~---------~~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 63 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET---------AAGD-----------KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKS 63 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE---------TTCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSC
T ss_pred hHHHHHHHhCCCCceEEEec---------CCCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 57889999999999998532 1344 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccccccc
Q 009160 142 AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSSVEQ 221 (541)
Q Consensus 142 ~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 221 (541)
++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+...... .++.++.....
T Consensus 64 ~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~------- 134 (503)
T 4fuq_A 64 VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGA--TVETLGPDGRG------- 134 (503)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHTC--EEEECCTTSCS-------
T ss_pred HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcCc--eEEEecCCccc-------
Confidence 999999999999999999999999999999999999999999998776555444332221 33433322110
Q ss_pred cCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccCh
Q 009160 222 SGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPL 301 (541)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl 301 (541)
.+.+... ............++|+++|+|||||||.||||+++|+++.+.+......+ +++++|++++.+|+
T Consensus 135 -------~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~~~~~p~ 205 (503)
T 4fuq_A 135 -------SLTDAAA-GASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-RFTPDDVLIHALPI 205 (503)
T ss_dssp -------HHHHHHH-TSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCS
T ss_pred -------ccchhhh-cCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEeCCh
Confidence 1222221 11222233456789999999999999999999999999999999988888 89999999999999
Q ss_pred HHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhH
Q 009160 302 AHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSK 377 (541)
Q Consensus 302 ~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~ 377 (541)
+|.+++.. .+.+++.|+++++ +++..+++. ++ ++|+++++|+++..+.+.....
T Consensus 206 ~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~-----------i~--~~t~~~~~P~~~~~l~~~~~~~--------- 263 (503)
T 4fuq_A 206 YHTHGLFVASNVTLFARGSMIFLPKFDPDKILDL-----------MA--RATVLMGVPTFYTRLLQSPRLT--------- 263 (503)
T ss_dssp SSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHH-----------HT--TCCEEEECHHHHHHHHTCTTCS---------
T ss_pred HHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHH-----------Hh--hcCEEEEHHHHHHHHHhCCCcc---------
Confidence 99999765 6778999999888 566666666 66 8999999999999887532100
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccc
Q 009160 378 KLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTET 457 (541)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~ 457 (541)
....+++|.+++||+++++++.+.+++.+|++++|.||+||+
T Consensus 264 --------------------------------------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~ 305 (503)
T 4fuq_A 264 --------------------------------------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTET 305 (503)
T ss_dssp --------------------------------------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTT
T ss_pred --------------------------------------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEccccc
Confidence 001148999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEc
Q 009160 458 CAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLM 537 (541)
Q Consensus 458 ~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~ 537 (541)
+..++.....+...+++|+|+++++++|+|+++++.++ .|+.|||+|+|+++++|||++|+.|++.| +.||||+|
T Consensus 306 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~~~g~~~T 380 (503)
T 4fuq_A 306 NMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELP---RGDIGMIEVKGPNVFKGYWRMPEKTKSEF--RDDGFFIT 380 (503)
T ss_dssp EECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCC---TTCCEEEEEESTTSCCCBTTCHHHHHHTB--CTTSCEEE
T ss_pred CcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCc---CCCceEEEEECCchhhhhcCChhhhHhhh--CCCCCeEc
Confidence 88765444445567899999999999999977777654 88999999999999999999999999999 78899999
Q ss_pred ccc
Q 009160 538 VAL 540 (541)
Q Consensus 538 ~~~ 540 (541)
+|+
T Consensus 381 GDl 383 (503)
T 4fuq_A 381 GDL 383 (503)
T ss_dssp EEE
T ss_pred cee
Confidence 885
No 12
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.7e-57 Score=482.59 Aligned_cols=374 Identities=24% Similarity=0.311 Sum_probs=312.6
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..|+.++|+++++++||++|+.+ +++ .+||+||.++++++|++|++.|+++||+|+|
T Consensus 5 ~~tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i 61 (509)
T 3ivr_A 5 DFTLADVYRRNAALFPDRTAFMV------------DGV-----------RLTHRDYLARAERLASGLLRDGVHTGDRVAI 61 (509)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred cCCHHHHHHHHHHHCCCceEEEE------------CCc-----------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 444 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+......++.+..++.+++....
T Consensus 62 ~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 139 (509)
T 3ivr_A 62 LSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGP-- 139 (509)
T ss_dssp ECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCCSS--
T ss_pred EcCCCHHHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCCcC--
Confidence 999999999999999999999999999999999999999999999999998877756655667777788877653211
Q ss_pred ccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEE
Q 009160 217 SSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYL 296 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 296 (541)
+.++.......+.......++|+++|+|||||||.||||+++|+++++.+.+....+ +++++|+++
T Consensus 140 -------------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l 205 (509)
T 3ivr_A 140 -------------FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-RLTEADVNL 205 (509)
T ss_dssp -------------CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEE
T ss_pred -------------hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-CCCCCcEEE
Confidence 111222112223334566789999999999999999999999999999999988888 899999999
Q ss_pred EccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccC
Q 009160 297 AYLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKG 373 (541)
Q Consensus 297 ~~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~ 373 (541)
+.+|++|++++...+.++..|+..++ +++..+.+. ++++++|+++++|+++..+++....
T Consensus 206 ~~~p~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~~~~~~------ 268 (509)
T 3ivr_A 206 GMLPLFHVTGLGLMLTLQQAGGASVIAAKFDPAQAARD-----------IEAHKVTVMAEFAPMLGNILDQAAP------ 268 (509)
T ss_dssp ECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEEETTHHHHHHHHCCG------
T ss_pred EeCCCcchhHHHHHHHHHHhCCcEEEecccCHHHHHHH-----------HHHHCCcEEEecHHHHHHHHhcccc------
Confidence 99999999999887765555555544 566677777 9999999999999999998874310
Q ss_pred chhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcceecc
Q 009160 374 GLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQGY 452 (541)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~~Y 452 (541)
.. .+++|.++.||++ ++.+.+++.+ +++++|.|
T Consensus 269 ---------------~~----------------------------l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~Y 302 (509)
T 3ivr_A 269 ---------------AQ----------------------------LASLRAVTGLDTP---ETIERFEATCPNATFWATF 302 (509)
T ss_dssp ---------------GG----------------------------GTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEE
T ss_pred ---------------cc----------------------------hhhhheecccCCh---HHHHHHHHhcCCCeEEccc
Confidence 00 1389999999998 8888888888 99999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCC
Q 009160 453 GLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLD 532 (541)
Q Consensus 453 G~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~d 532 (541)
|+||++++++.....+ ...++|+|+++++++|+| ++++.+ ++|+.|||+|+|+++++|||++|+.|++.| .|
T Consensus 303 G~TE~~~~~~~~~~~~-~~~~~G~p~~~~~~~i~d-~~~~~~---~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f---~~ 374 (509)
T 3ivr_A 303 GQSETSGLSTFAPYRD-RPKSAGRPLFWRTVAVVD-AEDRPL---PPGEVGEIVLRGPTVFKGYWNNAAATQHAF---RN 374 (509)
T ss_dssp EEGGGTEEEEEEEGGG-STTSCCEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCEETTCHHHHHHHT---GG
T ss_pred CccccccccccCcccc-CCCcccccCCCcEEEEEC-CCCCCC---CCCCceEEEEecCCccccccCCHHHhHHHh---hc
Confidence 9999998776654432 345699999999999999 667664 488999999999999999999999999999 47
Q ss_pred ceEEcccc
Q 009160 533 RFMLMVAL 540 (541)
Q Consensus 533 Gw~~~~~~ 540 (541)
|||+|+|+
T Consensus 375 g~~~TGDl 382 (509)
T 3ivr_A 375 GWHHTGDM 382 (509)
T ss_dssp GSEEEEEE
T ss_pred CCcccccE
Confidence 88888875
No 13
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4.7e-57 Score=478.54 Aligned_cols=372 Identities=21% Similarity=0.273 Sum_probs=298.8
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
|.|+.++|+++++++|+++|+.+.. .+ +.+||+||.++++++|++|++.|+++||+|+|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~~----------~~-----------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i 59 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVPA----------RG-----------LRLTHAELRARVEAVAARLHADGLRPQQRVAV 59 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEETT----------TT-----------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCcHHHHHHHHHHhCCCceEEEEcC----------CC-----------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999999999998620 13 37999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE--CccchhHH-HHhhcCCCCccEEEEecCCCc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC--GSKELKKL-VDLSGQLDTVKHVICMDANIP 213 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~-~~~~~~~~~~~~ii~~~~~~~ 213 (541)
+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|+ +.+..+.+ ... +.++ ++.
T Consensus 60 ~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~------ 128 (504)
T 1t5h_X 60 VAPNSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF------ 128 (504)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE------
T ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE------
Confidence 999999999999999999999999999999999999999999999999 76654444 221 1222 222
Q ss_pred cccccccccCCeEEeeHHHHHhccc----CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCC
Q 009160 214 SAVSSVEQSGRWKITSFADVQILGR----ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDL 289 (541)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 289 (541)
++++..... ..+.+.....++++++|+|||||||.||||+++|+++.+.+......+ ++
T Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-~~ 191 (504)
T 1t5h_X 129 ----------------LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-GL 191 (504)
T ss_dssp ----------------GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-CC
T ss_pred ----------------ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-CC
Confidence 222211110 111122345689999999999999999999999999999988887777 67
Q ss_pred --CCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 290 --GSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 290 --~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
+++|++++.+|++|++++.. ++.+++.|+++++ +++..+++. ++++++|+++++|+++..+.+
T Consensus 192 ~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 260 (504)
T 1t5h_X 192 RHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQL-----------VQQEQVTSLFATPTHLDALAA 260 (504)
T ss_dssp CSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHH
T ss_pred CCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHhCCeEEEeChHHHHHHHh
Confidence 88999999999999999854 7888999999998 556666666 999999999999999999987
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
........ ...++||.+++||+++++++.+++++.
T Consensus 261 ~~~~~~~~---------------------------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~ 295 (504)
T 1t5h_X 261 AAAHAGSS---------------------------------------------LKLDSLRHVTFAGATMPDAVLETVHQH 295 (504)
T ss_dssp HHCCTTCC---------------------------------------------CCCTTCCEEEECCTTCCHHHHHHHHHH
T ss_pred hhcccccc---------------------------------------------ccCccccEEEEcCCcCCHHHHHHHHHh
Confidence 43110000 001389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEc-cCCcccccCCCchh
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-GPNVTVGYFKNEEK 522 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~-g~~v~~GY~~~~~~ 522 (541)
+++.++|.||+||++. +... . ..+.+++|.|.++++++|+| +++.....++.|+.|||+|+ |+++++|||++|+.
T Consensus 296 ~~~~~~~~YG~TE~~~-~~~~-~-~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~ 371 (504)
T 1t5h_X 296 LPGEKVNIYGTTEAMN-SLYM-R-QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371 (504)
T ss_dssp CCSEEEEEEEETTTEE-EEEE-E-SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHH
T ss_pred cCcceeeeeccccccc-cccc-c-CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchh
Confidence 9999999999999833 2222 1 34568999999999999999 55532233568899999999 99999999999999
Q ss_pred hHhhhccCCCceEEcccc
Q 009160 523 TKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 523 t~~~f~~d~dGw~~~~~~ 540 (541)
|++.| .||||+|+|+
T Consensus 372 t~~~f---~~g~~~TGDl 386 (504)
T 1t5h_X 372 TAEKL---QDGWYRTSDV 386 (504)
T ss_dssp HHHHE---ETTEEEEEEE
T ss_pred hhhhh---cCCccccCcE
Confidence 99999 5789998885
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.3e-56 Score=481.27 Aligned_cols=385 Identities=17% Similarity=0.232 Sum_probs=316.7
Q ss_pred CCCHHHHHHHHHHH-----cCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCC
Q 009160 57 ISTLAELFEQSCKE-----HGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKK 130 (541)
Q Consensus 57 ~~tl~~~~~~~a~~-----~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~ 130 (541)
..++.++|++++++ +|+++|+.+.+ .+| +.+.+||+||.++++++|++|.+. |+++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~---------~~g---------~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~ 98 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVN---------GKG---------KELMWNFRELSENSQQAANVLSGACGLQR 98 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEEC---------SSS---------CEEEEEHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEc---------CCC---------ceeEEeHHHHHHHHHHHHHHHHHccCCCC
Confidence 34578999999999 99999998731 012 235899999999999999999999 9999
Q ss_pred CCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecC
Q 009160 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDA 210 (541)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~ 210 (541)
||+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+..+.+..+...++.++.++.+++
T Consensus 99 gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 99 GDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp TCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESS
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999887777776666777777777664
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHH--HHHHHHhhCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLA--TVSAVMTIVPD 288 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~--~~~~~~~~~~~ 288 (541)
.... ...+++++...... ..+.....++|+++|+|||||||.||||+++|+ ++. ..... ..+ +
T Consensus 179 ~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-~ 243 (570)
T 3c5e_A 179 KSCD-----------GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-G 243 (570)
T ss_dssp SCCT-----------TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-S
T ss_pred cCcc-----------ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-C
Confidence 2110 11346665543322 122345678999999999999999999999999 554 33333 445 7
Q ss_pred CCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe-----CCcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY-----GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~-----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
++++|++++.+|++|++++.. ++.++..|+++++ +++..+++. ++++++|+++++|+++..+.
T Consensus 244 ~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~ 312 (570)
T 3c5e_A 244 LQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-----------LSSYPIKSMMGAPIVYRMLL 312 (570)
T ss_dssp CCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHH
T ss_pred CCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH-----------HHHhCCeEEeccHHHHHHHH
Confidence 889999999999999999885 7788999999988 355556666 99999999999999999887
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
+.. ... ...+++|.+++||+++++++.+++++
T Consensus 313 ~~~---~~~---------------------------------------------~~~~~lr~i~~gGe~l~~~~~~~~~~ 344 (570)
T 3c5e_A 313 QQD---LSS---------------------------------------------YKFPHLQNCVTVGESLLPETLENWRA 344 (570)
T ss_dssp TSC---TTT---------------------------------------------CCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred hcc---ccc---------------------------------------------cccccceEEEEcCCcCCHHHHHHHHH
Confidence 530 000 01148999999999999999999999
Q ss_pred HhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEc-----cCCcccccC
Q 009160 443 CLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIA-----GPNVTVGYF 517 (541)
Q Consensus 443 ~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~-----g~~v~~GY~ 517 (541)
.+|++++|.||+||++..++.......+.+++|+|+++++++|+| ++|+.+ +.|+.|||+|+ |++++.|||
T Consensus 345 ~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~g~~~---~~G~~GEl~v~~~~~~g~~v~~GY~ 420 (570)
T 3c5e_A 345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIID-DKGNVL---PPGTEGDIGIRVKPIRPIGIFSGYV 420 (570)
T ss_dssp HHSCCCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCCEEEEC-TTSCBC---CTTCCEEEEEECSSBCCTTCCCEET
T ss_pred HhCCchhhccchhhcccceecCcccccCCCcccccCCCceEEEEC-CCCCCC---CCCCCCeeEEeccCCCCchhhcccc
Confidence 899999999999999876665544455678999999999999999 777765 48899999999 999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++|+.|++.| .+|||+|+|+
T Consensus 421 ~~~~~t~~~f---~~~~~~TGDl 440 (570)
T 3c5e_A 421 DNPDKTAANI---RGDFWLLGDR 440 (570)
T ss_dssp TCHHHHHHTE---ETTEEEEEEE
T ss_pred CChhHhhhhh---cCCcccccee
Confidence 9999999998 4788888774
No 15
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.1e-57 Score=488.85 Aligned_cols=368 Identities=18% Similarity=0.214 Sum_probs=297.8
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
+++...++.++|+++++++|+++|+.+ +++ .+||+||.++++++|++|.+.|+++||
T Consensus 34 ~~~~~~~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd 90 (563)
T 1amu_A 34 EYPRDKTIHQLFEEQVSKRPNNVAIVC------------ENE-----------QLTYHELNVKANQLARIFIEKGIGKDT 90 (563)
T ss_dssp CCCTTCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCcHHHHHHHHHHHCCCCeEEEe------------CCc-----------eecHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 345557999999999999999999986 333 799999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
+|+|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+..+ .....++.++...
T Consensus 91 ~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~----~~~~~~~~~~~~~ 166 (563)
T 1amu_A 91 LVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNI----QFNGQVEIFEEDT 166 (563)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTS----CCCSEEEECCCST
T ss_pred EEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhc----cccCceeeecchh
Confidence 999999999999999999999999999999999999999999999999999998765433222 1112233322210
Q ss_pred ccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCC
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSK 292 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~ 292 (541)
+. . ...........++|+++|+|||||||.||||++||+++.+.+......+ +++++
T Consensus 167 --------------------~~-~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~ 223 (563)
T 1amu_A 167 --------------------IK-I-REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-NVTEK 223 (563)
T ss_dssp --------------------TT-T-SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-CCCTT
T ss_pred --------------------hc-c-ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-CCCCC
Confidence 00 0 0111112345678999999999999999999999999999888887777 88999
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
|++++++|++|..+++.++.+++.|+++++. ++..+.+. ++++++|+++++|+++..+...
T Consensus 224 d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~-- 290 (563)
T 1amu_A 224 DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQY-----------INQKEITVITLPPTYVVHLDPE-- 290 (563)
T ss_dssp CEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHH-----------HHHTTCCEEEECHHHHTTSCTT--
T ss_pred CEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHH-----------HHHcCCcEEEeCHHHHHHHHhc--
Confidence 9999999999999998888899999999983 44455555 8999999999999988765321
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCC
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGA 446 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~ 446 (541)
..+++|.+++||+++++++.+++++ .+
T Consensus 291 ---------------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~ 317 (563)
T 1amu_A 291 ---------------------------------------------------RILSIQTLITAGSATSPSLVNKWKE--KV 317 (563)
T ss_dssp ---------------------------------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TS
T ss_pred ---------------------------------------------------ccccccEEEEEEecCCHHHHHHHHh--CC
Confidence 0138999999999999999999887 47
Q ss_pred cceeccCcccccccccccCCCC---CCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 447 PIGQGYGLTETCAGGTFSEVDD---SSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 447 ~v~~~YG~TE~~~~~~~~~~~~---~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+++|.||+||++..++...... ...+++|+|+++++++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d-~~~~~~---~~g~~GEl~v~g~~v~~GY~~~pe~t 393 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVD-ENLQLK---SVGEAGELCIGGEGLARGYWKRPELT 393 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHH
T ss_pred eEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEEC-CCcCCC---CCCCcEEEEEechhhChhhCCCchhh
Confidence 9999999999987766543322 2457899999999999999 777665 47899999999999999999999999
Q ss_pred Hhhhcc----CCCceEEcccc
Q 009160 524 KEVYKV----MLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~----d~dGw~~~~~~ 540 (541)
+++|.. +.+|||+|+|+
T Consensus 394 ~~~f~~~~~~~g~~w~~TGDl 414 (563)
T 1amu_A 394 SQKFVDNPFVPGEKLYKTGDQ 414 (563)
T ss_dssp HHHEEECSSSTTSEEEEEEEE
T ss_pred hhhcccCCCCCCCEEEecCCE
Confidence 999821 23579999885
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.2e-57 Score=481.95 Aligned_cols=384 Identities=23% Similarity=0.253 Sum_probs=305.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
..++.++|+++++ +|+++|+.+ +++ .+||+||.++++++|++|++.|+++||+|+|
T Consensus 23 ~~~~~~~l~~~~~-~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i 78 (529)
T 2v7b_A 23 FNFAAYLFRLNET-RAGKTAYID------------DTG-----------STTYGELEERARRFASALRTLGVHPEERILL 78 (529)
T ss_dssp CCHHHHHHHHTGG-GTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred eeHHHHHHHhhhc-cCCceEEEe------------CCC-----------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 3458999999999 999999985 333 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCc-cEEEEecCCCccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTV-KHVICMDANIPSA 215 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~ 215 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+..+.+.......+.. ..++.++.....
T Consensus 79 ~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (529)
T 2v7b_A 79 VMLDTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESE- 157 (529)
T ss_dssp ECCSSTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC-----
T ss_pred EcCCcHHHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccc-
Confidence 999999999999999999999999999999999999999999999999988776666554444444 455554432110
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHH-HHHHHHHHhhCCCCCCCcE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNV-LATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~~d~ 294 (541)
......++++..... .........++|+++|+|||||||.||||+++|+++ .+........+ ++.++|+
T Consensus 158 --------~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-~~~~~d~ 227 (529)
T 2v7b_A 158 --------PRLAPLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-GIAENDV 227 (529)
T ss_dssp ----------CCCBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-CCCTTCE
T ss_pred --------cccccchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-CCCCCcE
Confidence 011124666654322 122234567899999999999999999999999999 55544444445 7889999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEeC----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGYG----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|.+++.. ++.++..|+++++. ++..+++. ++++++|+++++|+++..+.+....
T Consensus 228 ~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~-- 294 (529)
T 2v7b_A 228 VFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFAR-----------LVEHRPTVFYGVPTLYANMLVSPNL-- 294 (529)
T ss_dssp EEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTCTTC--
T ss_pred EEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHH-----------HHHhCCEEEEecHHHHHHHHhCccc--
Confidence 999999999999876 56789999999873 55556666 9999999999999999888652100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcce
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIG 449 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~ 449 (541)
.. ....++|.+++||+++++++.+++++.+|++++
T Consensus 295 ---~~------------------------------------------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~ 329 (529)
T 2v7b_A 295 ---PA------------------------------------------RADVAIRICTSAGEALPREIGERFTAHFGCEIL 329 (529)
T ss_dssp ---CC------------------------------------------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred ---cc------------------------------------------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCcee
Confidence 00 000279999999999999999999999999999
Q ss_pred eccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhcc
Q 009160 450 QGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKV 529 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~ 529 (541)
+.||+||++.+.+.........+++|+|+++++++|+| ++|+.++ +|+.|||+|+|++++.|||++|+.|++.|
T Consensus 330 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-- 403 (529)
T 2v7b_A 330 DGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRD-EAGHAVP---DGEVGDLYIKGPSAAVMYWNNREKSRATF-- 403 (529)
T ss_dssp EEEECTTTSSEEEECCTTCCCTTSCCEECTTCEEEEEC-TTSCBCC---TTSCEEEEEECTTCCCCBTTCHHHHHHHE--
T ss_pred eeEchhhcCceeeccccCCCccCCcccCCCCCEEEEEC-CCCCCCC---CCCccEEEEecCCcccccCCChHHHHHhh--
Confidence 99999999776655544456678999999999999999 7777654 78999999999999999999999999999
Q ss_pred CCCceEEcccc
Q 009160 530 MLDRFMLMVAL 540 (541)
Q Consensus 530 d~dGw~~~~~~ 540 (541)
.+|||+|+|+
T Consensus 404 -~~~~~~TGDl 413 (529)
T 2v7b_A 404 -LGEWIRSGDK 413 (529)
T ss_dssp -ETTEEEEEEE
T ss_pred -hcCCcccCce
Confidence 4788888874
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.3e-57 Score=486.68 Aligned_cols=365 Identities=22% Similarity=0.238 Sum_probs=298.4
Q ss_pred CCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEE
Q 009160 56 GISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVA 135 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~ 135 (541)
...+++++|+++++++|+++|+.+ .++ .+||+||.++++++|++|+++|+++||+|+
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~ 129 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLH------------EAD-----------ELTYGALNERANRLAHRLVGLGVAPGTLVG 129 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEEC------------CCC-----------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEE
Confidence 457899999999999999999986 333 799999999999999999999999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccc
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSA 215 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~ 215 (541)
|+++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+.... +.....++..+...
T Consensus 130 i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~~--- 199 (570)
T 4gr5_A 130 VHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEAA--- 199 (570)
T ss_dssp EECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC------
T ss_pred EEeCCCHHHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeecccc---
Confidence 99999999999999999999999999999999999999999999999999765332 22222222211100
Q ss_pred cccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEE
Q 009160 216 VSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVY 295 (541)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~ 295 (541)
.............++|+++|+|||||||.||||+++|+++.+.+.. ...+ .++++|++
T Consensus 200 --------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~~ 257 (570)
T 4gr5_A 200 --------------------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYA-GFGPDEVF 257 (570)
T ss_dssp ------------------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSS-CCSTTCEE
T ss_pred --------------------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhc-CCCCCCEE
Confidence 0001111234567899999999999999999999999999876544 2334 78899999
Q ss_pred EEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 296 LAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 296 l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
++.+|++|..+...++.+++.|+++++. ++..+.+. ++++++|++.++|+++..+.+.....
T Consensus 258 l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~~~~l~~~~~~~-- 324 (570)
T 4gr5_A 258 LQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGEL-----------VARHGVTMLQLSASLFNFLVDEVPEA-- 324 (570)
T ss_dssp EECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCGGG--
T ss_pred EEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhchhh--
Confidence 9999999988777788899999999883 44455555 99999999999999999987642111
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcce
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIG 449 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~ 449 (541)
.++||.+++||+++++++.+.+.+.+ +++++
T Consensus 325 ------------------------------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~ 356 (570)
T 4gr5_A 325 ------------------------------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRLG 356 (570)
T ss_dssp ------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEE
T ss_pred ------------------------------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEE
Confidence 13899999999999999988888876 89999
Q ss_pred eccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 450 QGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 450 ~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
|+||+||+++.++..... .....++|+|+++++++|+| ++++.+ +.|+.|||+|+|+++++|||++|+.|++
T Consensus 357 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~---~~G~~GEl~v~g~~v~~GY~~~~~~t~~ 432 (570)
T 4gr5_A 357 NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLD-DDLKPA---ANGALGELYVAGAGLAHGYVSRPALTAE 432 (570)
T ss_dssp EEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEEC-TTSCBC---CTTCEEEEEEEETTCCCEETTCHHHHHH
T ss_pred EeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEEC-CCCCCC---CCCCcEEEEEeecccchhcCCCchhhhc
Confidence 999999998876654322 23447799999999999999 777665 4789999999999999999999999999
Q ss_pred hhccC------CCceEEcccc
Q 009160 526 VYKVM------LDRFMLMVAL 540 (541)
Q Consensus 526 ~f~~d------~dGw~~~~~~ 540 (541)
+|..| .+|||+|+|+
T Consensus 433 ~f~~~~~~~~~~~~w~~TGDl 453 (570)
T 4gr5_A 433 RFVADPFAGPGGERMYRTGDL 453 (570)
T ss_dssp HEEECTTCCSSCCEEEEEEEE
T ss_pred ccccCCCCCCCCCEEEeCCCe
Confidence 99221 2489999885
No 18
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.3e-56 Score=486.60 Aligned_cols=399 Identities=20% Similarity=0.252 Sum_probs=317.9
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|+++++++|+++|+++.. .. .++.+.+||+||.++++++|++|+++|+++||+|+|+
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~ 138 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEG-----------DD------TSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 138 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEEC-----------SS------TTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred hHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 468899999999999999998731 10 1234689999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCC--CccEEE
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLD--TVKHVI 206 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~~~~ii 206 (541)
++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+.....+ .+..++
T Consensus 139 ~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 218 (652)
T 1pg4_A 139 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI 218 (652)
T ss_dssp CCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEE
T ss_pred eCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEE
Confidence 9999999999999999999999999999999999999999999999987643 23333333332 456777
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH-HHhh
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~ 285 (541)
+++....... . .......|+++...... ..++....++|+++|+|||||||.||||+++|++++..+.. ....
T Consensus 219 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 292 (652)
T 1pg4_A 219 VLKRTGSDID-W----QEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV 292 (652)
T ss_dssp EECSSCCCCC-C----CBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH
T ss_pred EEeCCCCccc-c----cCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHh
Confidence 7654321100 0 00113457777653322 12334556899999999999999999999999999877643 4445
Q ss_pred CCCCCCCcEEEEccChHHHHHHH-HHHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+ +++++|++++++|++|++++. .++.+|+.|+++++. ++..+++. ++++++|+++++|++
T Consensus 293 ~-~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~P~~ 360 (652)
T 1pg4_A 293 F-DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQV-----------VDKHQVNILYTAPTA 360 (652)
T ss_dssp T-TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHH-----------HHHHTCSEEEECHHH
T ss_pred c-CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHH-----------HHHhCCeEEEeCHHH
Confidence 6 889999999999999999985 478899999999982 44555555 999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
+..+.+....... ....++||.+++||+++++++.
T Consensus 361 ~~~l~~~~~~~~~---------------------------------------------~~~l~sLr~i~~gGe~l~~~~~ 395 (652)
T 1pg4_A 361 IRALMAEGDKAIE---------------------------------------------GTDRSSLRILGSVGEPINPEAW 395 (652)
T ss_dssp HHHHHTTGGGGTT---------------------------------------------TCCCTTCCEEEEESSCCCHHHH
T ss_pred HHHHHhcCccccc---------------------------------------------cCCcCceEEEEEecCCCCHHHH
Confidence 9988763211100 0112489999999999999999
Q ss_pred HHHHHHhC---CcceeccCcccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEcc--C
Q 009160 438 RFINICLG---APIGQGYGLTETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAG--P 510 (541)
Q Consensus 438 ~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g--~ 510 (541)
+++++.+| +++++.||+||+++.++...+. ..+.+++|+|++|++++|+| ++|+.++ .|+.|||+|+| |
T Consensus 396 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~---~g~~GEl~i~g~~p 471 (652)
T 1pg4_A 396 EWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQE---GATEGNLVITDSWP 471 (652)
T ss_dssp HHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCC---SSEEEEEEECSCCT
T ss_pred HHHHHHhCCCCCcEEccccCcccccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcC---CCceEEEEEccCCC
Confidence 99999888 9999999999998876655432 34669999999999999999 6777654 68899999999 7
Q ss_pred CcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 511 NVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 511 ~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++++|||++|+.|.+.|+...+|||+|+|+
T Consensus 472 ~~~~gY~~~~e~~~~~~~~~~~g~y~TGDl 501 (652)
T 1pg4_A 472 GQARTLFGDHERFEQTYFSTFKNMYFSGDG 501 (652)
T ss_dssp TCCCEETTCHHHHHHHHHSSSTTSEEEEEE
T ss_pred chhhhhcCCHHHHHhhhhhcCCCEEECCcE
Confidence 999999999999998874445788888774
No 19
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=8.1e-57 Score=477.59 Aligned_cols=367 Identities=19% Similarity=0.217 Sum_probs=306.9
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhc-CCCCCCEEEEE
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQL-GHKKEERVAIF 137 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~-gv~~g~~V~i~ 137 (541)
|+.++|+++|+++|+++|+.+ +++ ++||+||.++++++|++|.+. |.++|++|+++
T Consensus 2 ~l~~~l~~~a~~~p~~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~ 58 (511)
T 3e7w_A 2 KLLHAIQTHAETYPQTDAFRS------------QGQ-----------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVY 58 (511)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEE
T ss_pred cHHHHHHHHHHHCCCCeEEEc------------CCc-----------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 789999999999999999986 444 799999999999999999885 88899999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++...... ...
T Consensus 59 ~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~----------------- 115 (511)
T 3e7w_A 59 GHMEPHMIVSFLGSVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVG----------------- 115 (511)
T ss_dssp ESSCHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCC-----------------
T ss_pred ecCCHHHHHHHHHHHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccch------hcc-----------------
Confidence 999999999999999999999999999999999999999999999997643210 000
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
......+++++...............++++++|+|||||||.||||+++|+++.+.+.+....+ .++++|++++
T Consensus 116 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~~l~ 189 (511)
T 3e7w_A 116 -----QQIQTVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-PVSGGKIFLN 189 (511)
T ss_dssp -----CSSCEEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-TTTTTCEEEE
T ss_pred -----cccceecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-CCCccceEEE
Confidence 1123445666655433333333456789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
.+|++|.+++..++.++..|+++++. ++..+++. ++++++|+++++|+++..+.......
T Consensus 190 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--- 255 (511)
T 3e7w_A 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEE-----------LKKSGLNVWTSTPSFVQMCLMDPGFS--- 255 (511)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCSEEEECHHHHHHHHTSTTCS---
T ss_pred eCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhccccc---
Confidence 99999999998889999999999883 45556666 99999999999999998886531100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
....+++|.+++||+++++++.+.+++.+ +++++|
T Consensus 256 --------------------------------------------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 291 (511)
T 3e7w_A 256 --------------------------------------------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFN 291 (511)
T ss_dssp --------------------------------------------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred --------------------------------------------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEe
Confidence 00114899999999999999999999998 899999
Q ss_pred ccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.||+||+++.++..... .....++|+|+++++++|+| ++|+.+ ++|+.|||+|+|+++++|||++|+.|++
T Consensus 292 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~---~~g~~GEl~v~g~~v~~GY~~~~~~t~~ 367 (511)
T 3e7w_A 292 TYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMD-EEGQPL---PEGEKGEIVIAGPSVSRGYLGEPELTEK 367 (511)
T ss_dssp CCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEEC-TTSCBC---CTTCCEEEEEESTTSCCCBTTCHHHHHH
T ss_pred CcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEEC-CCCCCC---CCCCceEEEEecCccChhhCCCcccchh
Confidence 99999998876654322 23457899999999999999 677765 4889999999999999999999999999
Q ss_pred hhccCCCc--eEEcccc
Q 009160 526 VYKVMLDR--FMLMVAL 540 (541)
Q Consensus 526 ~f~~d~dG--w~~~~~~ 540 (541)
.| .+.+| ||+|+|+
T Consensus 368 ~f-~~~~g~~~~~TGDl 383 (511)
T 3e7w_A 368 AF-FSHEGQWAYRTGDA 383 (511)
T ss_dssp HE-EESSSSEEEEEEEE
T ss_pred hh-cCCCCCEEEeCCCe
Confidence 98 33344 7888875
No 20
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=8.5e-57 Score=512.31 Aligned_cols=395 Identities=23% Similarity=0.283 Sum_probs=322.1
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
+++...|++++|.++++++|+++|+++.+ +|+ .+||+||.++++++|++|+++|+++||
T Consensus 56 ~~p~~~tl~~~l~~~a~~~pd~~Al~~~~----------~~~-----------~~TY~eL~~~~~~lA~~L~~~Gv~~gd 114 (979)
T 3tsy_A 56 YIPNHLSLHDYIFQNISEFATKPCLINGP----------TGH-----------VYTYSDVHVISRQIAANFHKLGVNQND 114 (979)
T ss_dssp CCCTTSCHHHHHTTTGGGTTTSEEEEETT----------TCC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEECC----------CCc-----------EEEHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 44566899999999999999999998621 233 799999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCC
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANI 212 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 212 (541)
+|+|+++|+++|+++++||+++|++++|++|.++++++.+++++++++++|++.+..+.+..+.... . ..++.+++..
T Consensus 115 ~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 192 (979)
T 3tsy_A 115 VVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-G-VVIVCIDDNE 192 (979)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-C-CEEEECCCCT
T ss_pred EEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-C-ceEEEeCCcc
Confidence 9999999999999999999999999999999999999999999999999999988776666554332 1 2355555432
Q ss_pred ccccccccccCCeEEeeHHHHHhcccC--CCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC---C
Q 009160 213 PSAVSSVEQSGRWKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV---P 287 (541)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~ 287 (541)
... ......+++++...... ...+.....++|+++|+|||||||.||||+++|+++++.+....... .
T Consensus 193 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~ 265 (979)
T 3tsy_A 193 SVP-------IPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNL 265 (979)
T ss_dssp TSC-------CCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSS
T ss_pred ccc-------CCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccc
Confidence 111 01122345554432221 12233456789999999999999999999999999999887765422 1
Q ss_pred CCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 288 DLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 288 ~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
.+.++|++++.+|++|++++.. ++.++..|+++++ +++..+++. ++++++|++.++|+++..+.+
T Consensus 266 ~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 334 (979)
T 3tsy_A 266 YFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLEL-----------IQRCKVTVAPMVPPIVLAIAK 334 (979)
T ss_dssp CCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHHTCCEEEECHHHHHHHHH
T ss_pred cCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHH-----------HHHhCCeEEEcHHHHHHHHHh
Confidence 5788999999999999999976 6778999999999 456666666 999999999999999998876
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
...... ...++||.+++||+++++++.+++++.
T Consensus 335 ~~~~~~-----------------------------------------------~~l~~lr~~~~gg~~l~~~~~~~~~~~ 367 (979)
T 3tsy_A 335 SSETEK-----------------------------------------------YDLSSIRVVKSGAAPLGKELEDAVNAK 367 (979)
T ss_dssp CGGGGT-----------------------------------------------SCCTTCCEEEESSCCCCSSHHHHHHHH
T ss_pred CccccC-----------------------------------------------CCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 421110 011489999999999999999999999
Q ss_pred h-CCcceeccCcccccccccccC-----CCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccC
Q 009160 444 L-GAPIGQGYGLTETCAGGTFSE-----VDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYF 517 (541)
Q Consensus 444 ~-g~~v~~~YG~TE~~~~~~~~~-----~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~ 517 (541)
+ +++++|.||+||++.+++... ....+.+++|+|+++++++|+|+++++.++ +|+.|||+|+|+++++|||
T Consensus 368 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~---~g~~GEl~i~g~~v~~GY~ 444 (979)
T 3tsy_A 368 FPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS---RNQPGEICIRGHQIMKGYL 444 (979)
T ss_dssp CTTCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC---TTCCEEEEEESTTSCSEET
T ss_pred CCCCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC---CCCccEEEEECCCcccccc
Confidence 8 899999999999987665431 223456899999999999999966677654 7889999999999999999
Q ss_pred CCchhhHhhhccCCCceEEcccc
Q 009160 518 KNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 518 ~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++|+.|++.| +.||||+|+|+
T Consensus 445 ~~p~~t~~~f--~~~g~~~TGDl 465 (979)
T 3tsy_A 445 NNPAATAETI--DKDGWLHTGDI 465 (979)
T ss_dssp TCHHHHHHHB--CTTSCEEEEEE
T ss_pred CChhhhhhhc--cCCCcEEcCCE
Confidence 9999999999 89999999985
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=3.6e-57 Score=480.55 Aligned_cols=369 Identities=19% Similarity=0.211 Sum_probs=301.7
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
|+.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|.+.|+++|++|++++
T Consensus 2 ~l~~~l~~~a~~~p~~~A~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~ 58 (512)
T 3fce_A 2 KLLEQIEKWAAETPDQTAFVW------------RDA-----------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYG 58 (512)
T ss_dssp CHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred cHHHHHHHHHHHCCCceEEEe------------CCc-----------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEe
Confidence 789999999999999999986 333 799999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++..... ...+ ..++.
T Consensus 59 ~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~--~~~~~----------- 119 (512)
T 3fce_A 59 HMQPEMIINFLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTV------TDLP--VRIVS----------- 119 (512)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCS------SCCS--SEEEE-----------
T ss_pred CCCHHHHHHHHHHHHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccc------cccc--cceec-----------
Confidence 9999999999999999999999999999999999999999999999854321 0000 01111
Q ss_pred ccccCCeEEeeHHHHHhccc-CCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 219 VEQSGRWKITSFADVQILGR-ENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
...+.++..... ..+.+.....++|+++|+|||||||.||||+++|+++++.+.+....+ +++++|++++
T Consensus 120 --------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~~~~d~~l~ 190 (512)
T 3fce_A 120 --------EDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-NLQTGQVFLN 190 (512)
T ss_dssp --------THHHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-TCCSSCEEEE
T ss_pred --------hhhhhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-CCCCCCEEEE
Confidence 011222222111 122223456789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
.+|++|.+++..++.+++.|+++++. ++..+++. ++++++|+++++|+++..++......
T Consensus 191 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~--- 256 (512)
T 3fce_A 191 QAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFAS-----------LEQSDIQVWTSTPSFAEMCLMEASFS--- 256 (512)
T ss_dssp CSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHH-----------HHHHCCCEEEECHHHHHHHTTSTTCS---
T ss_pred eCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHH-----------HHHcCCcEEEecHHHHHHHHhhcccc---
Confidence 99999999998889999999999984 44556666 99999999999999998876421100
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
....+++|.+++||+++++++.+.+++.+ +++++|
T Consensus 257 --------------------------------------------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~ 292 (512)
T 3fce_A 257 --------------------------------------------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMN 292 (512)
T ss_dssp --------------------------------------------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEE
T ss_pred --------------------------------------------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEe
Confidence 00124899999999999999999999998 899999
Q ss_pred ccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHh
Q 009160 451 GYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKE 525 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~ 525 (541)
.||+||+++.++..... .....++|+|+++++++|+| ++|+.++ +|+.|||+|+||+++.|||++|+.|++
T Consensus 293 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~~~t~~ 368 (512)
T 3fce_A 293 TYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMK-EDGTIAP---DGEKGEIVIVGPSVSVGYLGSPELTEK 368 (512)
T ss_dssp EECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEEC-SSSCBCC---TTSCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred CcccChhhhheeeEEeccccccccCCCccccccCCcEEEEEC-CCCCCCC---CCCeEEEEEeccccChhhcCCchhhhh
Confidence 99999998877654332 23568899999999999999 7777654 789999999999999999999999999
Q ss_pred hhc-cCCCceEEcccc
Q 009160 526 VYK-VMLDRFMLMVAL 540 (541)
Q Consensus 526 ~f~-~d~dGw~~~~~~ 540 (541)
.|. .|.+|||+|+|+
T Consensus 369 ~f~~~~~~~~~~TGDl 384 (512)
T 3fce_A 369 AFTMIDGERAYKTGDA 384 (512)
T ss_dssp HEEEETTEEEEEEEEE
T ss_pred ccccCCCCEEEeCCce
Confidence 982 356789999985
No 22
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.1e-56 Score=485.56 Aligned_cols=363 Identities=15% Similarity=0.144 Sum_probs=295.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....|++++|+++++++|+++|+.+ .+ +.+||+||.++++++|++|++.|+++|++|
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~------------~~-----------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V 80 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRD------------RF-----------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCL 80 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEE------------TT-----------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEc------------CC-----------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 3457999999999999999999986 33 379999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+|+++|+++|+++++||+++|++++|++|.++.+++.++++++++++++++....... ..... +.
T Consensus 81 ~i~~~~s~~~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~-~~------- 145 (620)
T 4dg8_A 81 GVYGEYSRESITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPC-VP------- 145 (620)
T ss_dssp EEESSSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCE-EE-------
T ss_pred EEEeCCCHHHHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCce-ee-------
Confidence 9999999999999999999999999999999999999999999999999765432110 00100 00
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
+... .............++|++||+|||||||.||||+++|+++.+.+.. ...+ .+.++|+
T Consensus 146 ---------------~~~~--~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-~~~~~d~ 206 (620)
T 4dg8_A 146 ---------------VRHL--PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-AFAPQMR 206 (620)
T ss_dssp ---------------GGGC--CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-TTCTTCE
T ss_pred ---------------eccC--CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-CCCCCCE
Confidence 0000 0001111223456899999999999999999999999999887655 3445 7889999
Q ss_pred EEEccChHHHHHHHHHHHHhhcCceEEeC-----CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhh
Q 009160 295 YLAYLPLAHVLELVAENLIAGVGSAIGYG-----TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKV 369 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~~~~~l~~G~~v~~~-----~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~ 369 (541)
+++.+|++|+.+++.++.+|+.|+++++. ++..+.+. ++++++|+++++|+++..+.+.....
T Consensus 207 ~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~~~~l~~~~~~~- 274 (620)
T 4dg8_A 207 FLVNSPLSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQL-----------IGERGADSAWLTASLFNTLVDLDPDC- 274 (620)
T ss_dssp EEECSCTTSTHHHHHHHHHHTTTCEEEECCSSSCCHHHHHHH-----------HHTTCCCEEEEEHHHHHHHHHHCGGG-
T ss_pred EEEECccCHHHHHHHHHHHHhcCCEEEeCccccCCHHHHHHH-----------HHHhCCcEEEccHHHHHHHHhcChhh-
Confidence 99999999999999999999999999883 44455555 99999999999999999887531100
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCcc
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPI 448 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v 448 (541)
.++||.+++||+++++++.+.+.+.+ ++++
T Consensus 275 -------------------------------------------------l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l 305 (620)
T 4dg8_A 275 -------------------------------------------------LGGLRQLLTGGDILSVPHVRRALLRHPRLHL 305 (620)
T ss_dssp -------------------------------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred -------------------------------------------------CCCccEEEEEeCcCCHHHHHHHHHhCCCeEE
Confidence 13899999999999999888776665 8999
Q ss_pred eeccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhH
Q 009160 449 GQGYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTK 524 (541)
Q Consensus 449 ~~~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~ 524 (541)
+|.||+||++..++..... .....++|+|++|++++|+| ++++.. ++.|+.|||||+|+++++||||+|+.|+
T Consensus 306 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~--~~~g~~GEl~i~G~~v~~GY~~~p~~t~ 382 (620)
T 4dg8_A 306 VNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLD-EHGQEI--AEPDRAGEIVAFGAGLAQGYRNDAARTR 382 (620)
T ss_dssp EEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEEC-TTSCBC--CSSSCCEEEEEEETTCCSEETTCHHHHH
T ss_pred EeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEEC-ccCCCC--CCCCCceEEEEeccccccccCCChhhhh
Confidence 9999999999877654322 23457999999999999999 666653 3478899999999999999999999999
Q ss_pred hhhccCCC-------ceEEcccc
Q 009160 525 EVYKVMLD-------RFMLMVAL 540 (541)
Q Consensus 525 ~~f~~d~d-------Gw~~~~~~ 540 (541)
++| ..+ +||+|+|+
T Consensus 383 ~~f--~~~p~~~~~~~~yrTGDl 403 (620)
T 4dg8_A 383 ASF--VELPYRGRLLRAYRTGDR 403 (620)
T ss_dssp HHE--EEEEETTEEEEEEEEEEE
T ss_pred hhh--ccCCCCCCCceEEeCCCE
Confidence 999 332 67888774
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.1e-56 Score=484.95 Aligned_cols=402 Identities=17% Similarity=0.169 Sum_probs=319.6
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLA-QLGHKKEERVA 135 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~ 135 (541)
..++.++|+++++++|+++|+++.. .. .+..+.+||+||.++++++|+.|+ ++|+++||+|+
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~~-----------~~------~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~ 143 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFEG-----------DE------PGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVA 143 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEEC-----------SS------TTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred ccHHHHHHHHHhccCCCceEEEEEc-----------CC------CCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 3578999999999999999998731 10 123468999999999999999999 99999999999
Q ss_pred EEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch---------hHHHHhhcCCCCccEEE
Q 009160 136 IFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL---------KKLVDLSGQLDTVKHVI 206 (541)
Q Consensus 136 i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~ii 206 (541)
|+++|++|++++++||+++|++++|+++.++++++.+++++++++++|+++... +.+.+....++.+++++
T Consensus 144 i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 223 (663)
T 1ry2_A 144 VYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVL 223 (663)
T ss_dssp ECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEE
T ss_pred EEcCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEE
Confidence 999999999999999999999999999999999999999999999999987643 23444455556677788
Q ss_pred EecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHH-HHhh
Q 009160 207 CMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSA-VMTI 285 (541)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~ 285 (541)
+++......... .......|+++..... ...++....++|+++|+|||||||.||||+++|++++..+.. ....
T Consensus 224 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~ 298 (663)
T 1ry2_A 224 VYRKTNNPSVAF----HAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYT 298 (663)
T ss_dssp EECSSCCSSCCC----CSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHH
T ss_pred EEecCCCCcccc----CCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHh
Confidence 776432100000 0112345777765332 222334567899999999999999999999999998876654 3445
Q ss_pred CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHH
Q 009160 286 VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAI 357 (541)
Q Consensus 286 ~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~ 357 (541)
+ +++++|++++.+|++|+.+... ++.+|+.|+++++. ++..+++. ++++++|+++++|++
T Consensus 299 ~-~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~-----------i~~~~vt~~~~~Ps~ 366 (663)
T 1ry2_A 299 F-DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDI-----------IDEHKVTQFYVAPTA 366 (663)
T ss_dssp S-CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHH-----------HHHTTCSEEEECHHH
T ss_pred c-CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHH-----------HHHcCCCEEEecHHH
Confidence 6 8899999999999999999854 78899999999882 34455555 999999999999999
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHH
Q 009160 358 LDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQ 437 (541)
Q Consensus 358 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~ 437 (541)
++.+.+....... ....++||.+++||+++++++.
T Consensus 367 ~~~l~~~~~~~~~---------------------------------------------~~~l~sLr~i~~gGe~l~~~~~ 401 (663)
T 1ry2_A 367 LRLLKRAGDSYIE---------------------------------------------NHSLKSLRCLGSVGEPIAAEVW 401 (663)
T ss_dssp HHHHTTSCTTSSS---------------------------------------------SCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCccccc---------------------------------------------cCCcCceEEEEEEcCCCCHHHH
Confidence 9888652110000 0012489999999999999999
Q ss_pred HHHHHHhC---CcceeccCcccccccccccCC---CCCCCCCcCCCcCCeEEEEEecCCCCccCCCCC-CCccEEEEcc-
Q 009160 438 RFINICLG---APIGQGYGLTETCAGGTFSEV---DDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSP-MPRGEIVIAG- 509 (541)
Q Consensus 438 ~~~~~~~g---~~v~~~YG~TE~~~~~~~~~~---~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~-g~~GEi~v~g- 509 (541)
+++++.+| +++++.||+||+++.++...+ ...+++++|+|++|++++|+|.++|+.++ . |+.|||+|+|
T Consensus 402 ~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~---~~g~~Gel~i~g~ 478 (663)
T 1ry2_A 402 EWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELN---TSHAEGVLAVKAA 478 (663)
T ss_dssp HHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEE---CSSCEEEEEESSC
T ss_pred HHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCC---CCCcceEEEEecC
Confidence 99999888 899999999999876665543 23467999999999999999943777664 4 7899999999
Q ss_pred -CCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 510 -PNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 510 -~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
|++++|||++|+.|.+.|+.+.+|||+|+|+
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDl 510 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDG 510 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEE
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCE
Confidence 5899999999999999984445788888874
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.2e-56 Score=482.27 Aligned_cols=384 Identities=19% Similarity=0.218 Sum_probs=314.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCE
Q 009160 54 WEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEER 133 (541)
Q Consensus 54 ~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~ 133 (541)
++...|+.++|+++++ ||++|+.+ .++ .+||+||.++++++|++|++.|+++|++
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~ 77 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVID------------GER-----------QLSYRELNQAADNLACSLRRQGIKPGET 77 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCE
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEec------------CCc-----------eEeHHHHHHHHHHHHHHHHHcCCCCCCE
Confidence 4556799999999888 99999986 333 7999999999999999999999999999
Q ss_pred EEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccch-----hHHHHhhcCCCCccEEEEe
Q 009160 134 VAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKEL-----KKLVDLSGQLDTVKHVICM 208 (541)
Q Consensus 134 V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~ii~~ 208 (541)
|+++++|+++++++++||+++|+++||+++.++.+++.++++++++++++++.... ..+.......+..+.+...
T Consensus 78 V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (617)
T 3rg2_A 78 ALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLL 157 (617)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeec
Confidence 99999999999999999999999999999999999999999999999999987653 2233333344555555555
Q ss_pred cCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCC
Q 009160 209 DANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPD 288 (541)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~ 288 (541)
++.... .+.+....... ........+++++||+|||||||.||||+++|+++++.+......+ +
T Consensus 158 ~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-~ 221 (617)
T 3rg2_A 158 NDSGEH--------------NLQDAINHPAE-DFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-Q 221 (617)
T ss_dssp TCCSTT--------------BHHHHHHSCCS-SCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-T
T ss_pred cccccc--------------chhhhhccccc-ccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-C
Confidence 443211 13333332211 2223456689999999999999999999999999999999988888 8
Q ss_pred CCCCcEEEEccChHHHHHHHH--HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHH
Q 009160 289 LGSKDVYLAYLPLAHVLELVA--ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRD 363 (541)
Q Consensus 289 ~~~~d~~l~~~pl~h~~~~~~--~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 363 (541)
+.++|++++.+|++|.+++.. ++.+++.|+++++ .++..+.+. ++++++|++.++|+++..+.+
T Consensus 222 ~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 222 FTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPL-----------IEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp CCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHTTCCEEEECHHHHHHHHH
T ss_pred CCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHH-----------HHHhCCcEEEcchHHHHHHHH
Confidence 999999999999999998875 7888999999999 344445555 999999999999999999887
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHH
Q 009160 364 GVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINIC 443 (541)
Q Consensus 364 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~ 443 (541)
......... ..+++|.+++||+++++++.+++.+.
T Consensus 291 ~~~~~~~~~---------------------------------------------~l~~lr~i~~gGe~l~~~~~~~~~~~ 325 (617)
T 3rg2_A 291 ALIEGESRA---------------------------------------------QLASLKLLQVGGARLSATLAARIPAE 325 (617)
T ss_dssp HHHTTCCTT---------------------------------------------TTTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred hhhcccccc---------------------------------------------cCCCccEEEEcCCcCCHHHHHHHHHH
Confidence 543321100 01389999999999999999999999
Q ss_pred hCCcceeccCcccccccccccCCCC-CCCCCcCCCc-CCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCch
Q 009160 444 LGAPIGQGYGLTETCAGGTFSEVDD-SSVGRVGAPL-PCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEE 521 (541)
Q Consensus 444 ~g~~v~~~YG~TE~~~~~~~~~~~~-~~~~~vG~p~-~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~ 521 (541)
+|++++|.||+||++...+...... ....++|+|+ ++.+++|+| ++++.+ +.|+.|||+|+|+++++||||+|+
T Consensus 326 ~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~ 401 (617)
T 3rg2_A 326 IGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVAD-AEGNPL---PQGEVGRLMTRGPYTFRGYYKSPQ 401 (617)
T ss_dssp TCSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEEC-TTSCBC---CTTCCEEEEEECSSSCSCCTTCHH
T ss_pred hCCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEEC-CCCCCC---CCCCceEEEecCccccchhcCChh
Confidence 9999999999999986554332211 1236799997 788999999 777665 488999999999999999999999
Q ss_pred hhHhhhccCCCceEEcccc
Q 009160 522 KTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 522 ~t~~~f~~d~dGw~~~~~~ 540 (541)
.|+++| +.||||+|+|+
T Consensus 402 ~t~~~f--~~~~~yrTGDl 418 (617)
T 3rg2_A 402 HNASAF--DANGFYCSGDL 418 (617)
T ss_dssp HHHHHB--CTTSCEEEEEE
T ss_pred hhhhcc--CCCCceecCce
Confidence 999999 88999999985
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=4.1e-56 Score=473.51 Aligned_cols=368 Identities=20% Similarity=0.211 Sum_probs=301.5
Q ss_pred CCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Q 009160 57 ISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAI 136 (541)
Q Consensus 57 ~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i 136 (541)
+.++.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|.+.|+++||+|++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~------------~~~-----------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i 59 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDC------------LGE-----------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLV 59 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEE------------TTE-----------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCCcceec------------CCC-----------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 46899999999999999999986 444 7999999999999999999999999999999
Q ss_pred EeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccc
Q 009160 137 FADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAV 216 (541)
Q Consensus 137 ~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~ 216 (541)
+++|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+....+ .
T Consensus 60 ~~~n~~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~---------------- 116 (521)
T 3l8c_A 60 FGAQTYDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------E---------------- 116 (521)
T ss_dssp EECSSHHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------T----------------
T ss_pred EeCCCHHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc-------c----------------
Confidence 99999999999999999999999999999999999999999999999987643211 0
Q ss_pred ccccccCCeEEeeHHHHHhcc--cCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh--CCCCCCC
Q 009160 217 SSVEQSGRWKITSFADVQILG--RENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI--VPDLGSK 292 (541)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~~ 292 (541)
......+.++.... ...........++|+++|+|||||||.||||+++|+++++.+.+.... + .+.++
T Consensus 117 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-~~~~~ 188 (521)
T 3l8c_A 117 -------GISLVSLSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-DVPKQ 188 (521)
T ss_dssp -------TSEEEEHHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-CCCSS
T ss_pred -------cCcccchhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-CCCCC
Confidence 12233344433221 111222345678999999999999999999999999999988877665 5 77899
Q ss_pred cEEEEccChHHHHHHHHHHHHhhcCceEEeC------CcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHH
Q 009160 293 DVYLAYLPLAHVLELVAENLIAGVGSAIGYG------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVR 366 (541)
Q Consensus 293 d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 366 (541)
|++++.+|++|..++..++.++..|+++++. ++..+.+. ++++++|++.++|+++..+.....
T Consensus 189 ~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~ 257 (521)
T 3l8c_A 189 PQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTT-----------IAQLPVGIWTSTPSFADMAMLSDD 257 (521)
T ss_dssp CEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHH-----------HHHSCCSEEEECHHHHHHHHTSTT
T ss_pred CeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHH-----------HHHcCCcEEEeCCCHHHHHhhhhc
Confidence 9999999999999988888899999999884 34445555 899999999999999987764211
Q ss_pred HhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-C
Q 009160 367 KKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-G 445 (541)
Q Consensus 367 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g 445 (541)
... ...+++|.+++||+++++++.+.+.+.+ +
T Consensus 258 ~~~-----------------------------------------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~ 290 (521)
T 3l8c_A 258 FCQ-----------------------------------------------AKMPALTHFYFDGEELTVSTARKLFERFPS 290 (521)
T ss_dssp CST-----------------------------------------------TTCTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred ccc-----------------------------------------------ccCccceEEEEecccCCHHHHHHHHHHCCC
Confidence 000 0113899999999999999999999888 8
Q ss_pred CcceeccCcccccccccccCCC-----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCc
Q 009160 446 APIGQGYGLTETCAGGTFSEVD-----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNE 520 (541)
Q Consensus 446 ~~v~~~YG~TE~~~~~~~~~~~-----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~ 520 (541)
++++|.||+||+++.++..... ....+++|+|+++++++|+| ++|+.++ .|+.|||+|+||+++.|||++|
T Consensus 291 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~---~g~~GEl~v~g~~v~~GY~~~~ 366 (521)
T 3l8c_A 291 AKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIID-EDGKELS---SGEQGEIIVTGPAVSKGYLNNP 366 (521)
T ss_dssp CEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEEC-TTSCBCC---TTCCEEEEEESTTSCSCBTTCH
T ss_pred ceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEEC-CCcCCCC---CCCceEEEecccccChhhcCCc
Confidence 9999999999998876654322 23557899999999999999 7777654 7899999999999999999999
Q ss_pred hhhHhhhc-cCCCceEEcccc
Q 009160 521 EKTKEVYK-VMLDRFMLMVAL 540 (541)
Q Consensus 521 ~~t~~~f~-~d~dGw~~~~~~ 540 (541)
+.|++.|. .+.+|||+|+|+
T Consensus 367 ~~t~~~f~~~~~~~~~~TGDl 387 (521)
T 3l8c_A 367 EKTAEAFFTFKGQPAYHTGDI 387 (521)
T ss_dssp HHHHHHEEEETTEEEEEEEEE
T ss_pred hHhhccCcCCCCceeeeCCCE
Confidence 99999982 256789998875
No 26
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3.9e-55 Score=473.24 Aligned_cols=383 Identities=19% Similarity=0.209 Sum_probs=304.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 55 EGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 55 ~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
....|+.++|+++++++|+++|+.+.+ + +..+++||+||.++++++|++|.+.|+++||+|
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~-----------~--------~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V 68 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLN-----------K--------ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRV 68 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEE-----------T--------TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEE
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEc-----------C--------CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEE
Confidence 356799999999999999999998742 1 122589999999999999999999999999999
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCC---CHHHHHHHHhhcCceEEEECccchhHHHHhh-cCCCCccEEEEecC
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASL---GEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDA 210 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~ 210 (541)
+++++|+++++++++||+++|++++|+++.+ +.+++.++++.+++++++++.+....+.... ...+....
T Consensus 69 ~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~------ 142 (590)
T 3kxw_A 69 LLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLK------ 142 (590)
T ss_dssp EEECCSSHHHHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETT------
T ss_pred EEEcCCchhHHHHHHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccc------
Confidence 9999999999999999999999999999988 4578999999999999999987655443221 11111111
Q ss_pred CCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCC
Q 009160 211 NIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLG 290 (541)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 290 (541)
+.....+++... ......+....++|+++|+|||||||.||||++||+++++.+.+....+ +++
T Consensus 143 --------------~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~ 206 (590)
T 3kxw_A 143 --------------IPAIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-HMN 206 (590)
T ss_dssp --------------EEEEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-TCC
T ss_pred --------------cceeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-CCC
Confidence 111112221111 1112233456789999999999999999999999999999999988888 899
Q ss_pred CCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHHHHHHHH
Q 009160 291 SKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVR 362 (541)
Q Consensus 291 ~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 362 (541)
++|++++++|++|++++.. ++.+++.|+++++. +|..+++. ++++++|++.++|.++..+.
T Consensus 207 ~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKH-----------ITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp TTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHH-----------HHHHTCSEEEECTHHHHHHH
T ss_pred CcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHH-----------HHHhCCeeecCChhHHHHHH
Confidence 9999999999999999987 78889999999984 45556666 99999999999999999887
Q ss_pred HHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHH
Q 009160 363 DGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINI 442 (541)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~ 442 (541)
+........ ....+++|.+++||+++++++.+.+++
T Consensus 276 ~~~~~~~~~--------------------------------------------~~~l~~lr~~~~gg~~l~~~~~~~~~~ 311 (590)
T 3kxw_A 276 KRIREEKKE--------------------------------------------GLDLSSWVTAFNGAEPVREETMEHFYQ 311 (590)
T ss_dssp HHCCGGGGT--------------------------------------------TCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHhhhhhcc--------------------------------------------CCCchhhHHHhhCCCCCCHHHHHHHHH
Confidence 753221110 001148999999999999999999999
Q ss_pred HhC------CcceeccCcccccccccccCCC---------------------------CCCCCCcCCCcCCeEEEEEecC
Q 009160 443 CLG------APIGQGYGLTETCAGGTFSEVD---------------------------DSSVGRVGAPLPCSFIKLIDWP 489 (541)
Q Consensus 443 ~~g------~~v~~~YG~TE~~~~~~~~~~~---------------------------~~~~~~vG~p~~~~ev~ivd~~ 489 (541)
.++ ++++|.||+||+++.++..... ....+++|+|+++ ++|+|.+
T Consensus 312 ~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d~~ 389 (590)
T 3kxw_A 312 AFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIIDPD 389 (590)
T ss_dssp HHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEECTT
T ss_pred HHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEcCC
Confidence 873 4799999999998877654321 1123789999998 8899954
Q ss_pred CCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCC------Cc--eEEcccc
Q 009160 490 EGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVML------DR--FMLMVAL 540 (541)
Q Consensus 490 ~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~------dG--w~~~~~~ 540 (541)
++..+ +.|+.|||+|+||++++|||++|+.|+++| .. +| ||+|+|+
T Consensus 390 ~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f--~~~~~~~~~g~~~~~TGDl 443 (590)
T 3kxw_A 390 TLIPC---DFDQVGEIWVQSNSVAKGYWNQPEETRHAF--AGKIKDDERSAIYLRTGDL 443 (590)
T ss_dssp TCCBC---CTTBCEEEEEESTTSCCCBTTCHHHHHHHH--CBCCTTC---CCBEEEEEE
T ss_pred CCcCC---CCCCEEEEEEeCCcccccccCChhHHHHHH--hccccCCCCCCcEEecCcE
Confidence 46554 488999999999999999999999999999 32 35 9999985
No 27
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.3e-56 Score=469.03 Aligned_cols=365 Identities=23% Similarity=0.316 Sum_probs=292.9
Q ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEE
Q 009160 56 GISTLAELFEQSCKEHGD-KYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERV 134 (541)
Q Consensus 56 ~~~tl~~~~~~~a~~~p~-~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V 134 (541)
++.++.++|.++++++|+ ++|+.+ +++ .+||+||.++++++|.+|. .|++|
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~------------~~~-----------~~Ty~eL~~~~~~~A~~L~-----~~~~V 71 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRF------------GER-----------SLTYAELAAAAGATAGRIG-----GAGRV 71 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEE------------TTE-----------EEEHHHHHHHHHHHHTTCC--------CE
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEE------------CCe-----------eeeHHHHHHHHHHHHhhcc-----CCCEE
Confidence 467899999999999988 999986 443 7999999999999998874 38899
Q ss_pred EEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcc
Q 009160 135 AIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPS 214 (541)
Q Consensus 135 ~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 214 (541)
+++++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++.+... ......+.. +.++..
T Consensus 72 ~i~~~~~~~~~~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~-~~~~~~--- 142 (505)
T 3nyq_A 72 AVWATPAMETGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALER-VDVDVR--- 142 (505)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEE-EECCTT---
T ss_pred EEEcCCCHHHHHHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccc-cccccc---
Confidence 99999999999999999999999999999999999999999999999999865210 001111111 111100
Q ss_pred ccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcE
Q 009160 215 AVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDV 294 (541)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~ 294 (541)
.....+.....++|+++|+|||||||.||||+++|+++.+.+......+ +++++|+
T Consensus 143 -----------------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~d~ 198 (505)
T 3nyq_A 143 -----------------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-QWTGEDV 198 (505)
T ss_dssp -----------------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-TCCTTCE
T ss_pred -----------------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-CCCCCcE
Confidence 0111223456789999999999999999999999999999999888888 8999999
Q ss_pred EEEccChHHHHHHHH-HHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhh
Q 009160 295 YLAYLPLAHVLELVA-ENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVD 370 (541)
Q Consensus 295 ~l~~~pl~h~~~~~~-~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~ 370 (541)
+++.+|++|..++.. ++.++..|+++++ +++..+.+. + ++++|+++++|+++..+.+.......
T Consensus 199 ~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i-~~~~t~~~~~P~~~~~l~~~~~~~~~ 266 (505)
T 3nyq_A 199 LVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARE-----------L-NDGATMLFGVPTMYHRIAETLPADPE 266 (505)
T ss_dssp EEECCCTTSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHH-----------H-TTTCCEEEECHHHHHHHHHHGGGCHH
T ss_pred EEEeccHHHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHH-----------H-hhCCeEEEehHHHHHHHHHhhhcCch
Confidence 999999999999875 7889999999998 455555555 6 78999999999999998874321110
Q ss_pred ccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCccee
Q 009160 371 AKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQ 450 (541)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~ 450 (541)
. ...+ +++|.+++||+++++++.+++++.+|++++|
T Consensus 267 ~-------------~~~l-------------------------------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~ 302 (505)
T 3nyq_A 267 L-------------AKAL-------------------------------AGARLLVSGSAALPVHDHERIAAATGRRVIE 302 (505)
T ss_dssp H-------------HHHH-------------------------------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEE
T ss_pred h-------------hccc-------------------------------ccceEEEECCCCCCHHHHHHHHHhcCCeeec
Confidence 0 0001 2899999999999999999999999999999
Q ss_pred ccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccC
Q 009160 451 GYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVM 530 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d 530 (541)
.||+||++..++.........+++|+|+++++++|+| ++++.++..+.|+.|||+|+|++++.|||++|+.|++.| +
T Consensus 303 ~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f--~ 379 (505)
T 3nyq_A 303 RYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF--T 379 (505)
T ss_dssp EEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB--C
T ss_pred ccchhhcccccccCCCCCCCCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh--c
Confidence 9999999887776655566779999999999999999 778776654558899999999999999999999999999 8
Q ss_pred CCceEEcccc
Q 009160 531 LDRFMLMVAL 540 (541)
Q Consensus 531 ~dGw~~~~~~ 540 (541)
.||||+|+|+
T Consensus 380 ~~g~y~TGDl 389 (505)
T 3nyq_A 380 EDGFFRTGDM 389 (505)
T ss_dssp TTSCEEEEEE
T ss_pred CCCCCccCCe
Confidence 8999999885
No 28
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=7e-54 Score=462.15 Aligned_cols=381 Identities=24% Similarity=0.312 Sum_probs=307.9
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCC
Q 009160 53 SWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEE 132 (541)
Q Consensus 53 ~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~ 132 (541)
.+++..|+.++|+++++++|+.+++... .+..+++||+||.++++++|++|+++|+++||
T Consensus 16 ~~~~~~tl~~~l~~~a~~~p~~~~~~~~--------------------~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd 75 (576)
T 3gqw_A 16 RYADFPTLVDALDYAALSSAGMNFYDRR--------------------CQLEDQLEYQTLKARAEAGAKRLLSLNLKKGD 75 (576)
T ss_dssp CCSCCSSHHHHHHHHTTSSCEEEEECTT--------------------SCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTC
T ss_pred ccCCCCcHHHHHHHHhhCCCCeEEeCCC--------------------CCceeEEcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3456789999999999999997776421 11225899999999999999999999999999
Q ss_pred EEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCC-------HHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEE
Q 009160 133 RVAIFADTRAEWFVALQGCFRRNVTVVTIYASLG-------EEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHV 205 (541)
Q Consensus 133 ~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~i 205 (541)
+|+++++|+++|+++++||+++|++++|+++.++ .+++.++++.++++++|++.+..+.+.......+..
T Consensus 76 ~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~--- 152 (576)
T 3gqw_A 76 RVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPEL--- 152 (576)
T ss_dssp EEEEECCSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTC---
T ss_pred EEEEEcCCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcc---
Confidence 9999999999999999999999999999999999 899999999999999999998877766654433222
Q ss_pred EEecCCCccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhh
Q 009160 206 ICMDANIPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTI 285 (541)
Q Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~ 285 (541)
.......... ............++++++|+|||||||.||||+++|+++++.+......
T Consensus 153 --------------------~~~~~~~~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~ 211 (576)
T 3gqw_A 153 --------------------HVLSHAWFKA-LPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD 211 (576)
T ss_dssp --------------------EEEEHHHHHT-SCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT
T ss_pred --------------------eecchhhhhc-ccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc
Confidence 1112222211 1122223345678999999999999999999999999999988887655
Q ss_pred -CCCCCCCcEEEEccChHHHHHHHH-HHHHhhcCceEEeC-------CcccccccchhhhcCcccccccccceEEeecHH
Q 009160 286 -VPDLGSKDVYLAYLPLAHVLELVA-ENLIAGVGSAIGYG-------TPLTLTDTSSKIKKGTQGDASVLRPTVMASVPA 356 (541)
Q Consensus 286 -~~~~~~~d~~l~~~pl~h~~~~~~-~~~~l~~G~~v~~~-------~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 356 (541)
+ +++++|++++++|++|++++.. ++.++..|+++++. ++..+++. ++++++|+++++|.
T Consensus 212 ~~-~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~p~ 279 (576)
T 3gqw_A 212 GI-KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKL-----------ISKNRGTVSVAPPF 279 (576)
T ss_dssp TS-CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHH-----------HHHTTCCEEEECHH
T ss_pred cc-CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHH-----------HHHhCCeEEEcCHH
Confidence 5 8899999999999999999877 56678899988873 55566666 99999999999999
Q ss_pred HHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHH
Q 009160 357 ILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADT 436 (541)
Q Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~ 436 (541)
++..+.+..... .......+++|.+++||+++++++
T Consensus 280 ~~~~l~~~~~~~--------------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~ 315 (576)
T 3gqw_A 280 GYELCQRRVNEK--------------------------------------------DLAELDLSCWRVAGIGAEPISAEQ 315 (576)
T ss_dssp HHHHHHHSCCHH--------------------------------------------HHTTCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHhccc--------------------------------------------ccccCChhhhHhhhccCccCCHHH
Confidence 998776532111 001111248999999999999999
Q ss_pred HHHHHHHh------CCcceeccCcccccccccccCCCCC----------------------------CCCCcCCCcCCeE
Q 009160 437 QRFINICL------GAPIGQGYGLTETCAGGTFSEVDDS----------------------------SVGRVGAPLPCSF 482 (541)
Q Consensus 437 ~~~~~~~~------g~~v~~~YG~TE~~~~~~~~~~~~~----------------------------~~~~vG~p~~~~e 482 (541)
.+++.+.+ +++++|.||+||++..++....... ...++|+|+++++
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~ 395 (576)
T 3gqw_A 316 LHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHG 395 (576)
T ss_dssp HHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCE
T ss_pred HHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCe
Confidence 99999988 7889999999999887765432211 0137999999999
Q ss_pred EEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEcccc
Q 009160 483 IKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 483 v~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~ 540 (541)
++|+| ++|+.++ .|+.|||+|+|+++++|||++|+.|++.+ .||||+|+|+
T Consensus 396 ~~i~d-~~g~~~~---~g~~GEl~v~g~~~~~gY~~~~~~~~~~~---~~g~~~TGDl 446 (576)
T 3gqw_A 396 IEIRN-EAGMPVA---ERVVGHICISGPSLMSGYFGDQVSQDEIA---ATGWLDTGDL 446 (576)
T ss_dssp EEEEC-TTSCBCC---TTBCEEEEEESTTSCCCBTTCHHHHHHHH---HHSCEEEEEE
T ss_pred EEEEC-CCCCCCC---CCCeEEEEEeCccccccccCCcccccccc---CCCeeeccce
Confidence 99999 7777654 78999999999999999999999988765 7889998875
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7.8e-55 Score=461.42 Aligned_cols=375 Identities=19% Similarity=0.229 Sum_probs=289.9
Q ss_pred CHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Q 009160 59 TLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFA 138 (541)
Q Consensus 59 tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~ 138 (541)
|+.++|+++++++|+++|+.+ .++ .+||+||.++++++|++|++. +||+|+|++
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~------------~~~-----------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~ 55 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITD------------GQE-----------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYI 55 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEEC------------SSC-----------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEe------------CCc-----------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEc
Confidence 567899999999999999985 333 799999999999999999986 899999999
Q ss_pred CCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCcccccc
Q 009160 139 DTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVSS 218 (541)
Q Consensus 139 ~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 218 (541)
+|+++|+++++||+++|++++|+++.++++++.+++++++++++|++.+.......... ...+..+..........
T Consensus 56 ~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 131 (501)
T 3ipl_A 56 DNSIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDDIEFAGRDITTNGLL--- 131 (501)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC-----------------
T ss_pred CCCHHHHHHHHHHHHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cccceeeeeeccccccc---
Confidence 99999999999999999999999999999999999999999999999775433211110 11111111100000000
Q ss_pred ccccCCeEEe-eHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 219 VEQSGRWKIT-SFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
......... ..+.+...............++|+++|+|||||||.||||+++|+++.+.+......+ +++++|++++
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-~~~~~d~~l~ 209 (501)
T 3ipl_A 132 -DNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-GFDRDTNWLS 209 (501)
T ss_dssp -------------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-CCCTTCEEEE
T ss_pred -ccccccccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-CCCccCEEEE
Confidence 000000000 0011110000001122345789999999999999999999999999999999888888 8999999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGG 374 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~ 374 (541)
.+|++|++++..++.++..|+++++ +++..+++. ++++++|+++++|+++..+.+.....
T Consensus 210 ~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~------ 272 (501)
T 3ipl_A 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTM-----------IKNERITHISLVPQTLNWLMQQGLHE------ 272 (501)
T ss_dssp CSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHH-----------HHHSCCCEEEECHHHHHHHHHHTCCS------
T ss_pred eCcHHHHHHHHHHHHHHHcCceEEeCCCCCHHHHHHH-----------HHHcCCcEEEchHHHHHHHHhcCCCC------
Confidence 9999999999988889999999999 566667776 99999999999999999887642110
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCc
Q 009160 375 LSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGL 454 (541)
Q Consensus 375 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~ 454 (541)
..++|.+++||+++++++.+.+++ ++++++|.||+
T Consensus 273 --------------------------------------------~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~ 307 (501)
T 3ipl_A 273 --------------------------------------------PYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGM 307 (501)
T ss_dssp --------------------------------------------CTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEE
T ss_pred --------------------------------------------cCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccc
Confidence 017999999999999999999987 49999999999
Q ss_pred ccccccccccCCC--CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCC
Q 009160 455 TETCAGGTFSEVD--DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLD 532 (541)
Q Consensus 455 TE~~~~~~~~~~~--~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~d 532 (541)
||+++.++..... ..+.+++|+|+++++++|+|. + +++.|||+|+|+++++|||++++.|++ | .|
T Consensus 308 TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~-~--------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~---~~ 374 (501)
T 3ipl_A 308 TETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNP-N--------KEGHGELMIKGANVMNGYLYPTDLTGT-F---EN 374 (501)
T ss_dssp GGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESC-C--------SSCCEEEEEESTTSCSCCSBSTTCCCS-E---ET
T ss_pred cccccceeecCccccccCCCCCCCCCCCcEEEEecC-C--------CCCccEEEEeccchhhhhCcChhhcch-h---cC
Confidence 9998765544332 235689999999999999993 2 345799999999999999999999987 6 57
Q ss_pred ceEEcccc
Q 009160 533 RFMLMVAL 540 (541)
Q Consensus 533 Gw~~~~~~ 540 (541)
|||+|+|+
T Consensus 375 g~~~TGDl 382 (501)
T 3ipl_A 375 GYFNTGDI 382 (501)
T ss_dssp TEEEEEEE
T ss_pred CceecCCE
Confidence 88888774
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5e-54 Score=501.57 Aligned_cols=367 Identities=21% Similarity=0.241 Sum_probs=300.8
Q ss_pred CCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Q 009160 58 STLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKEERVAIF 137 (541)
Q Consensus 58 ~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~ 137 (541)
.+++++|+++++++|+++|+.+ .++ .+||+||+++++++|+.|.+.|+++|++|+|+
T Consensus 464 ~~l~~~~~~~~~~~p~~~Av~~------------~~~-----------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 464 KPLTYWFKEAVNANPDAPALTY------------SGQ-----------TLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp CCHHHHHHHHHHHCTTSEEEES------------SSC-----------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred CCHHHHHHHHHHhCCCCeEEEE------------CCe-----------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 6899999999999999999985 333 79999999999999999999999999999999
Q ss_pred eCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCCCccccc
Q 009160 138 ADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDANIPSAVS 217 (541)
Q Consensus 138 ~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~ 217 (541)
++|+++++++++||+++|+++||++|.++.+++.+++++++++++|++.+....+. .++....++.+++..
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~~~~~~~~~~~~~----- 591 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELPYTGTTLFIDDQT----- 591 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCCCCSEEEESSCGG-----
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccCCCCcEEEecccc-----
Confidence 99999999999999999999999999999999999999999999999976543221 122223334333210
Q ss_pred cccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEE
Q 009160 218 SVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLA 297 (541)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~ 297 (541)
.. ......+.....++++|||+|||||||.||||+++|+++.+. .+....+ .++++|++++
T Consensus 592 --------------~~---~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-~~~~~d~~l~ 652 (1304)
T 2vsq_A 592 --------------RF---EEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-AFSDQDTFLS 652 (1304)
T ss_dssp --------------GG---GSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-CCCTTCEEEE
T ss_pred --------------cc---ccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-CCCCCCEEEE
Confidence 00 001111233567899999999999999999999999999875 3333445 7889999999
Q ss_pred ccChHHHHHHHHHHHHhhcCceEEeCCc------ccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhc
Q 009160 298 YLPLAHVLELVAENLIAGVGSAIGYGTP------LTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDA 371 (541)
Q Consensus 298 ~~pl~h~~~~~~~~~~l~~G~~v~~~~~------~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~ 371 (541)
..|++|+.+.+.++.+|+.|+++++.+. ..+.+. ++++++|+++++|+++..+.+.....
T Consensus 653 ~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~-----------i~~~~vt~~~~~p~~~~~l~~~~~~~--- 718 (1304)
T 2vsq_A 653 VSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDL-----------ILQENVNVMFATTALFNLLTDAGEDW--- 718 (1304)
T ss_dssp CSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHH-----------HHHHTCCEEEEEHHHHHHHHHHCSHH---
T ss_pred ECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHH-----------HHHcCCcEEEccHHHHHHHHhhchhc---
Confidence 9999999999889999999999999544 344445 99999999999999999886531000
Q ss_pred cCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh-CCccee
Q 009160 372 KGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL-GAPIGQ 450 (541)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~-g~~v~~ 450 (541)
+ +++|.+++||+++++++.+.+.+.+ +++++|
T Consensus 719 -------------------~----------------------------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n 751 (1304)
T 2vsq_A 719 -------------------M----------------------------KGLRCILFGGERASVPHVRKALRIMGPGKLIN 751 (1304)
T ss_dssp -------------------H----------------------------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEE
T ss_pred -------------------C----------------------------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEE
Confidence 0 1899999999999999999888877 478999
Q ss_pred ccCcccccccccccCCC----CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhh
Q 009160 451 GYGLTETCAGGTFSEVD----DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEV 526 (541)
Q Consensus 451 ~YG~TE~~~~~~~~~~~----~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~ 526 (541)
.||+||++..++..... .....++|+|++|++++|+| ++++.+ +.|..|||||+|+++++||||+|+.|+++
T Consensus 752 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d-~~~~~~---p~G~~GEl~i~G~~v~~GY~~~p~~T~~~ 827 (1304)
T 2vsq_A 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILN-EQSQLQ---PFGAVGELCISGMGVSKGYVNRADLTKEK 827 (1304)
T ss_dssp EECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEEC-TTSCBC---CTTCCEEEEEEETTCCCCBTTCHHHHHHH
T ss_pred eEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEEC-CCcCCC---CCCCceEEEEeccccCccccCCcccchhh
Confidence 99999999877665432 23457899999999999999 666654 58899999999999999999999999999
Q ss_pred hcc----CCCceEEcccc
Q 009160 527 YKV----MLDRFMLMVAL 540 (541)
Q Consensus 527 f~~----d~dGw~~~~~~ 540 (541)
|.. +.++||+|+|+
T Consensus 828 f~~~p~~~g~~~yrTGDl 845 (1304)
T 2vsq_A 828 FIENPFKPGETLYRTGDL 845 (1304)
T ss_dssp EEECTTSTTCEEEEEEEE
T ss_pred hccCCCCCCCeeEecCCe
Confidence 932 23569999885
No 31
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.1e-53 Score=458.82 Aligned_cols=390 Identities=19% Similarity=0.191 Sum_probs=294.1
Q ss_pred ccCCCCCCHHHHHHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCCccEEeeHHHHHHHHHHHHHHHHhcCCCCC
Q 009160 52 TSWEGISTLAELFEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLGEYEWLTYGQAFETICNFASGLAQLGHKKE 131 (541)
Q Consensus 52 ~~~~~~~tl~~~~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ty~el~~~~~~la~~L~~~gv~~g 131 (541)
..+....|+.++|+++|+++|+++|+.+.+-. .+. ..+..+.+||+||.++++++|+.|.+.|+ +|
T Consensus 14 ~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~--------~~~-----~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~g 79 (562)
T 3ite_A 14 AQYTSTVPPSHYIETWAKTHPEWKAVEVATGF--------LGS-----QKIVTEDWTYKKLNETANQVANLIIHASL-HG 79 (562)
T ss_dssp ----CCCCTTHHHHHHHHHCTTSEEEEEEECC------------------CEEEEEEHHHHHHHHHHHHHHHHHTTC-SS
T ss_pred eeecccCCHHHHHHHHHHHCCCchhhhccccc--------ccc-----cccccCCCCHHHHHHHHHHHHHHHHhcCC-CC
Confidence 34456688999999999999999999874200 000 01223689999999999999999999999 79
Q ss_pred CEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhhcCCCCccEEEEecCC
Q 009160 132 ERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 132 ~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
|+|+++++|+++|+++++||+++|++++|+++.++.+++.+++++++++++|++.+....+ .......++..+.
T Consensus 80 d~V~i~~~n~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~- 153 (562)
T 3ite_A 80 RAIAVSLDRSLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----ELPPETKVLDTKN- 153 (562)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CCCTTCEEEETTC-
T ss_pred CEEEEEeCCCHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----ccCccceeecccc-
Confidence 9999999999999999999999999999999999999999999999999999987654321 1111112221110
Q ss_pred CccccccccccCCeEEeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC-----
Q 009160 212 IPSAVSSVEQSGRWKITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV----- 286 (541)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~----- 286 (541)
..+.+...... .........++++++|+|||||||.||||+++|+++.+.+......+
T Consensus 154 ----------------~~~~~~~~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~ 216 (562)
T 3ite_A 154 ----------------QSFIENLSTQD-TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAP 216 (562)
T ss_dssp ----------------HHHHHHHHHSC-CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCG
T ss_pred ----------------hhhhhhccccc-ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccc
Confidence 01222221111 11122345578899999999999999999999999998877654431
Q ss_pred --CCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEeCCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHH
Q 009160 287 --PDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGYGTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDG 364 (541)
Q Consensus 287 --~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 364 (541)
..+...+++++..|++|..++..++.++..|+++++.......+. +...++++++|+++++|++++.+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~-------~~~~i~~~~~t~~~~~P~~l~~~~~~ 289 (562)
T 3ite_A 217 KSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDD-------LPRTFRELGVTHAGIVPSLLDQTGLV 289 (562)
T ss_dssp GGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHS-------HHHHHHHTTCCEEEECHHHHHHHTCC
T ss_pred hhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHH-------HHHHHHHcCCCEEEcCHHHHhhcccC
Confidence 147788999999999999998888899999999988543222111 12228999999999999987654221
Q ss_pred HHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHh
Q 009160 365 VRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICL 444 (541)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~ 444 (541)
. . ..++||.+++||+++++++.+++++.+
T Consensus 290 ~----~-----------------------------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~ 318 (562)
T 3ite_A 290 P----E-----------------------------------------------DAPHLVYLGVGGEKMTPRTQQIWSSSD 318 (562)
T ss_dssp G----G-----------------------------------------------GSTTCCEEEEESSCCCHHHHHHHTTCS
T ss_pred c----c-----------------------------------------------ccCceEEEEEecCCCCHHHHHHHhhCC
Confidence 0 0 113899999999999999999999988
Q ss_pred CCcceeccCcccccccccccCCC-CCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccCCcccccCCCchhh
Q 009160 445 GAPIGQGYGLTETCAGGTFSEVD-DSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKT 523 (541)
Q Consensus 445 g~~v~~~YG~TE~~~~~~~~~~~-~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t 523 (541)
+++++|.||+||++..++..... ....+++|+|+++++++|+|.++++.+ ++|+.|||+|+|+++++|||++|+.|
T Consensus 319 ~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~---~~g~~GEl~v~g~~v~~GY~~~p~~t 395 (562)
T 3ite_A 319 RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHV---KKGMAGELVIEGSLVANGYLNRPDAK 395 (562)
T ss_dssp SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBC---CTTSCEEEEEESTTSCCEESSCTTCC
T ss_pred CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCC---CCCCceEEEEeccccchhhCCCcccc
Confidence 99999999999998776654433 345688999999999999995455554 47899999999999999999999999
Q ss_pred HhhhccCCCceEEcccc
Q 009160 524 KEVYKVMLDRFMLMVAL 540 (541)
Q Consensus 524 ~~~f~~d~dGw~~~~~~ 540 (541)
+..+ .|.+|||+|+|+
T Consensus 396 ~~~~-~~g~~w~~TGDl 411 (562)
T 3ite_A 396 GFCD-INGRKMYRTGDI 411 (562)
T ss_dssp SEEE-ETTEEEEEEEEE
T ss_pred cccc-CCCCEEEecCCE
Confidence 8654 333448888774
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.5e-33 Score=281.63 Aligned_cols=213 Identities=19% Similarity=0.223 Sum_probs=181.9
Q ss_pred CCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhCCCCCCCcEEEEccChHHHHHHHHHHHHhhcCceEEe-CCccc
Q 009160 249 SADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPDLGSKDVYLAYLPLAHVLELVAENLIAGVGSAIGY-GTPLT 327 (541)
Q Consensus 249 ~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~pl~h~~~~~~~~~~l~~G~~v~~-~~~~~ 327 (541)
.||++||+|||||||.||||++||+++++.+......+ +++++|++++++|++|++++..++.++..|+++++ .....
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~ 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc
Confidence 47899999999999999999999999999999988888 89999999999999999999988889999999988 33334
Q ss_pred ccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHH
Q 009160 328 LTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWN 407 (541)
Q Consensus 328 l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (541)
+.+. ++++++|+++++|+++..+++......
T Consensus 115 ~~~~-----------i~~~~~t~~~~~P~~l~~ll~~~~~~~-------------------------------------- 145 (358)
T 4gs5_A 115 PLAG-----------LDHADFDFVAMVPMQLQSILENSATSG-------------------------------------- 145 (358)
T ss_dssp TTTT-----------CSSCCCSEEEECHHHHHHHHHCTTTGG--------------------------------------
T ss_pred HHHH-----------HHHhCCeEEEcChHHHHHhhccccccc--------------------------------------
Confidence 4555 899999999999999999876321110
Q ss_pred HHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCCCcCCeEEEEEe
Q 009160 408 LLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGAPLPCSFIKLID 487 (541)
Q Consensus 408 ~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~ev~ivd 487 (541)
..++||.+++||+++++++.+++++. |++++|.||+||+++.++....+....+++|.|.|++++++.+
T Consensus 146 ----------~l~~lr~v~~gG~~l~~~~~~~~~~~-~~~~~~~YG~TEt~~~~~~~~~~~~~~g~~~~~~pgv~~~~~~ 214 (358)
T 4gs5_A 146 ----------QVDRLGKVLLGGAPVNHALAMQISDL-AMPVYQSYGMTETVSHVALKALNGPEASELYVFLPGIQYGVDE 214 (358)
T ss_dssp ----------GGGGGCSEEECSSCCCHHHHHHHHTC-SSCEEEEEECGGGSSEEEEEECSSTTCCSCEEECTTCEEEECT
T ss_pred ----------cCCcceEEEEcccCCCchheeccccc-CceEEeccccccccceeecccccccccceeeccCCCeEEEecC
Confidence 01389999999999999999999874 9999999999999998888777777789999999999988743
Q ss_pred cCCCCccCCCCCCCccEEEEccCCcccccCCCchhhHhhhccCCCceEEccccC
Q 009160 488 WPEGGYLTSDSPMPRGEIVIAGPNVTVGYFKNEEKTKEVYKVMLDRFMLMVALR 541 (541)
Q Consensus 488 ~~~~~~~~~~~~g~~GEi~v~g~~v~~GY~~~~~~t~~~f~~d~dGw~~~~~~~ 541 (541)
.|||+++|+....|||. |.+..+.|+|||+++ ||+
T Consensus 215 --------------~Gel~~~g~~~~~g~~~----TGDlg~~d~~g~~~~-GR~ 249 (358)
T 4gs5_A 215 --------------RGCLHISGAVTNGQTVQ----TNDLVEIHGNAFQWI-GRA 249 (358)
T ss_dssp --------------TSEEEEESGGGTTCCEE----EEEEEEECSSEEEEE-EEG
T ss_pred --------------cCceEEecccccCccee----cCCccccccCceEEc-ccc
Confidence 49999999998888885 666667799997665 764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=3.9e-30 Score=267.06 Aligned_cols=204 Identities=17% Similarity=0.168 Sum_probs=162.1
Q ss_pred CCCCC-CCeEEEEeccCCCCCccEEEechHHHHHHHHHHH---hhCCCCCCCcEEEEccChHHHHHHH-HHHHHhhcCce
Q 009160 245 DYPVS-ADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVM---TIVPDLGSKDVYLAYLPLAHVLELV-AENLIAGVGSA 319 (541)
Q Consensus 245 ~~~~~-~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~~d~~l~~~pl~h~~~~~-~~~~~l~~G~~ 319 (541)
....+ +++++|+|||||||.||||+++|+++.+.+.... ..+ ++.++|++++.+|+.|..+.+ ..+.++..|++
T Consensus 80 ~~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 80 VAGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV-GIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CCSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT-TCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred ccCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc-CCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 34455 8999999999999999999999999987765553 334 788999999999997666555 46778999999
Q ss_pred EEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHhhhcCCCC
Q 009160 320 IGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLFDLAYARRLSAINGSWF 396 (541)
Q Consensus 320 v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 396 (541)
+++ +++..+++. +++++||+++++|+++..+.+.........
T Consensus 159 ~~~~~~~~~~~~~~~-----------i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~------------------------ 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKF-----------ISDFKTTALHAIPSYAIRLAEVFQEEGIDP------------------------ 203 (436)
T ss_dssp EECCCSCCHHHHHHH-----------HHHHTCCEEECCHHHHHHHHHHHHHTTCCT------------------------
T ss_pred EEeCCCCCHHHHHHH-----------HHHHCCCEEEECHHHHHHHHHHHHHcCCCc------------------------
Confidence 988 455566666 999999999999999999987654321110
Q ss_pred CCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccccccccCCCCCCCCCcCC
Q 009160 397 GAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAGGTFSEVDDSSVGRVGA 476 (541)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~vG~ 476 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++.++..... .....|.
T Consensus 204 ---------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~--~~~g~~~ 260 (436)
T 3qov_A 204 ---------------------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQ--EQNGMHF 260 (436)
T ss_dssp ---------------------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECT--TCSSEEE
T ss_pred ---------------------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecC--CCCeeEE
Confidence 01389999999999999999999999999999999999996653322221 1233677
Q ss_pred CcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 477 PLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 477 p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
|.++++++|+|+++++.++ +|+.|||+|+|.
T Consensus 261 ~~~~~~v~i~d~~~g~~~~---~g~~Gel~v~~~ 291 (436)
T 3qov_A 261 WEDCYLVEIIDPETGEPVP---EGEIGELVLTTL 291 (436)
T ss_dssp CTTTEEEEEECTTTCSBCS---TTCCEEEEEEES
T ss_pred ccCceEEEEEECCCCCCCC---CCCceEEEEecc
Confidence 8889999999977787654 788999999984
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=1e-29 Score=264.05 Aligned_cols=218 Identities=18% Similarity=0.137 Sum_probs=166.5
Q ss_pred eeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-HH
Q 009160 228 TSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-AH 303 (541)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~h 303 (541)
.+.+++.... +.......++++++|+|||||||.||||+++|+++...+..... .+ +++++|++++.+|+ .|
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 146 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA-GARRGDKVHVSYGYGLF 146 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSSS
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEccccccc
Confidence 3455555432 22233456789999999999999999999999999877654432 45 78899999999998 68
Q ss_pred HHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHHH
Q 009160 304 VLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKLF 380 (541)
Q Consensus 304 ~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~ 380 (541)
..++...+.++..|+++++ +++..+++. +++++||+++++|+++..+.+.........
T Consensus 147 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-------- 207 (437)
T 2y27_A 147 TGGLGAHYGAERAGLTVIPFGGGQTEKQVQL-----------IQDFRPDIIMVTPSYMLSIADEIERQGLDP-------- 207 (437)
T ss_dssp HHHHHHHHHHHHTTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG--------
T ss_pred ccchHHHHHHHHcCCEEEeCCCCCHHHHHHH-----------HHHhCCCEEEECHHHHHHHHHHHHHcCCCc--------
Confidence 8887777888999999987 455666666 999999999999999999987543211100
Q ss_pred HHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCccccccc
Q 009160 381 DLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCAG 460 (541)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~ 460 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++.
T Consensus 208 -------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~ 250 (437)
T 2y27_A 208 -------------------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGP 250 (437)
T ss_dssp -------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEE
T ss_pred -------------------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCC
Confidence 0138999999999999999999999899999999999998543
Q ss_pred -ccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 461 -GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 461 -~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
++..... .....|.|.++++++|+|+++|+.++ +|+.|||+|+|.
T Consensus 251 ~~~~~~~~--~~~g~~~~~~~~~~~i~d~~~g~~~~---~g~~Gel~v~~~ 296 (437)
T 2y27_A 251 GVASECVE--TKDGPTIWEDHFYPEIIDPETGEVLP---DGELGELVFTSL 296 (437)
T ss_dssp EEEECCTT--TCSSCEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES
T ss_pred eeEEecCC--CCCceeEccCceEEEEEcCCCCCCCC---CCCccEEEEecC
Confidence 3322221 11125667789999999965676654 788999999983
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.96 E-value=1.8e-29 Score=262.57 Aligned_cols=219 Identities=15% Similarity=0.101 Sum_probs=166.2
Q ss_pred EeeHHHHHhcccCCCCCCCCCCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHh---hCCCCCCCcEEEEccCh-H
Q 009160 227 ITSFADVQILGRENPVDADYPVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMT---IVPDLGSKDVYLAYLPL-A 302 (541)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~pl-~ 302 (541)
+.+.+++.... +.......++++++|+|||||||.||||+++|+++...+..... .+ +++++|++++.+|+ .
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~~ 147 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA-GGRPGDTLHNAFGYGL 147 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT-TCCTTCEEEECSCCSS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc-CCCCCCEEEEeccCcc
Confidence 34455655322 22223456789999999999999999999999998876554433 45 78899999999999 5
Q ss_pred HHHHHHHHHHHhhcCceEEe---CCcccccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHHH
Q 009160 303 HVLELVAENLIAGVGSAIGY---GTPLTLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKKL 379 (541)
Q Consensus 303 h~~~~~~~~~~l~~G~~v~~---~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l 379 (541)
|..++...+.++..|+++++ +++..+++. +++++||+++++|+++..|.+.........
T Consensus 148 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------- 209 (443)
T 2y4o_A 148 FTGGLGIHYGAERLGCMVVPMSGGQTEKQVQL-----------IRDFEPKIILVTPSYMLNLIDEMVRQGMDP------- 209 (443)
T ss_dssp SHHHHHHHHHHHHHTCEEECCCSCCHHHHHHH-----------HHHHCCSEEEECHHHHHHHHHHHHHTTCCG-------
T ss_pred cccHHHHHHHHHHcCCEEEECCCCCHHHHHHH-----------HHHhCCcEEEECHHHHHHHHHHHHHcCCCc-------
Confidence 77777777888999999988 455566666 999999999999999999987543221100
Q ss_pred HHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHHHHhCCcceeccCcccccc
Q 009160 380 FDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFINICLGAPIGQGYGLTETCA 459 (541)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~~~~g~~v~~~YG~TE~~~ 459 (541)
..+++|.+++||+++++++.+++++.+|++++|.||+||+++
T Consensus 210 --------------------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g 251 (443)
T 2y4o_A 210 --------------------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMG 251 (443)
T ss_dssp --------------------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTE
T ss_pred --------------------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcC
Confidence 013899999999999999999999999999999999999855
Q ss_pred c-ccccCCCCCCCCCcCCCcCCeEEEEEecCCCCccCCCCCCCccEEEEccC
Q 009160 460 G-GTFSEVDDSSVGRVGAPLPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP 510 (541)
Q Consensus 460 ~-~~~~~~~~~~~~~vG~p~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~ 510 (541)
. +...... . ....+.|.++++++|+|+++|+.++ +|+.|||+|+|.
T Consensus 252 ~~~~~~~~~-~-~~g~~~~~~~~~~~i~d~~~g~~~~---~G~~Gel~v~~~ 298 (443)
T 2y4o_A 252 PGVACECVE-T-KDGPVIWEDHFYPEIIDPVTGEVLP---DGSQGELVFTSL 298 (443)
T ss_dssp EEEEEECTT-T-CCSEEECTTTEEEEEECTTTCCBCC---TTCCEEEEEEES
T ss_pred CeEEeccCC-C-CCceEEccCCeEEEEEcCCCCCCCC---CCCceEEEEeCC
Confidence 3 3322211 1 1125557789999999965677654 788999999983
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=2.9e-30 Score=261.96 Aligned_cols=223 Identities=15% Similarity=0.125 Sum_probs=173.0
Q ss_pred CCCCCeEEEEeccCCCCCccEEEechHHHHHHHHHHHhhC--CCCCCCcEEEEccCh-HHHHHHHHHHHHhhcCceEEe-
Q 009160 247 PVSADVAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIV--PDLGSKDVYLAYLPL-AHVLELVAENLIAGVGSAIGY- 322 (541)
Q Consensus 247 ~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~pl-~h~~~~~~~~~~l~~G~~v~~- 322 (541)
..++++++|+|||||||.||||+++|+++.+.+.+....+ .++.++|++++.+|+ +|++++...+.++..|+.++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4678999999999999999999999999999888654322 267899999999999 999999888888999994443
Q ss_pred -CCcc-----------------------cccccchhhhcCcccccccccceEEeecHHHHHHHHHHHHHhhhccCchhHH
Q 009160 323 -GTPL-----------------------TLTDTSSKIKKGTQGDASVLRPTVMASVPAILDRVRDGVRKKVDAKGGLSKK 378 (541)
Q Consensus 323 -~~~~-----------------------~l~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~ 378 (541)
++|. .+.+. ++++++|+++++|+++..|++.....
T Consensus 168 ~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------i~~~~~t~l~~~Ps~~~~l~~~~~~~---------- 226 (369)
T 3hgu_A 168 DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNT-----------LMNQDIRFLVTTPPVLRELLKRPEVV---------- 226 (369)
T ss_dssp CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHSCEEEEEECHHHHHHHTTCHHHH----------
T ss_pred cCChHHHHHhhcccchhhhHHHHHHHHHHHHHH-----------HHhCCCCEEEeCHHHHHHHHhhhhhh----------
Confidence 4444 33334 89999999999999999987642100
Q ss_pred HHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCceEEEEEccCCCCHHHHHHHH-HHh-CCcceeccCccc
Q 009160 379 LFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRIRFILSGGAPLSADTQRFIN-ICL-GAPIGQGYGLTE 456 (541)
Q Consensus 379 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lr~i~~gg~~l~~~~~~~~~-~~~-g~~v~~~YG~TE 456 (541)
..++ +++|.+++||+++++++.++++ +.| +++++|.||+||
T Consensus 227 ------~~~~-------------------------------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE 269 (369)
T 3hgu_A 227 ------LQMK-------------------------------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269 (369)
T ss_dssp ------HHHH-------------------------------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred ------cccc-------------------------------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence 0001 2899999999999999999999 888 899999999999
Q ss_pred ccccccccCCCCCCCCCcCCC------cCCeEEEEEecCCCCccCCCCCCCccEEEEccC---CcccccCCCchhhHhhh
Q 009160 457 TCAGGTFSEVDDSSVGRVGAP------LPCSFIKLIDWPEGGYLTSDSPMPRGEIVIAGP---NVTVGYFKNEEKTKEVY 527 (541)
Q Consensus 457 ~~~~~~~~~~~~~~~~~vG~p------~~~~ev~ivd~~~~~~~~~~~~g~~GEi~v~g~---~v~~GY~~~~~~t~~~f 527 (541)
+++++.... ..++|+| +++++++|+|+++++.++ +|+.|||+|++. ..+.+|...+..+...
T Consensus 270 ~~~~~~~~~-----~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp---~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~- 340 (369)
T 3hgu_A 270 ALGVSRSLL-----ITSESQQVIYDSFSPFITYDVVDSITAQTVE---YGERGNVIVTHLSPWAFYPRVAERDTAIRLP- 340 (369)
T ss_dssp GTEEEEECC-----BCTTCSSCEEECCTTTEEEEEECTTTCSBCC---TTCEEEEEEEEEETTEEEEEEEEEEEEEEEC-
T ss_pred hhcceeccc-----cccCCCcccccCCCCCeEEEEECCCCCcCCC---CCCceEEEEEEcCcccccccccCCceEEEec-
Confidence 887653221 1258999 999999999955777654 889999999873 3467898877776654
Q ss_pred ccCCCceEEcc
Q 009160 528 KVMLDRFMLMV 538 (541)
Q Consensus 528 ~~d~dGw~~~~ 538 (541)
+.+||++..
T Consensus 341 --~~~g~~~d~ 349 (369)
T 3hgu_A 341 --GVSGFAGDR 349 (369)
T ss_dssp --CSTTCSSCE
T ss_pred --CCCCCcCcc
Confidence 378887653
No 37
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.61 E-value=1.5 Score=44.24 Aligned_cols=107 Identities=12% Similarity=-0.019 Sum_probs=82.3
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+..++++.. .++++...+++.++++
T Consensus 109 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 187 (443)
T 2y4o_A 109 VVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKI 187 (443)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcE
Confidence 34689999988888888888788999999999988853 44455678888899998887764 7889999999999999
Q ss_pred EEECccchhHHHHhh--cC----CCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS--GQ----LDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~--~~----~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. .. .+.++.+++-.+.
T Consensus 188 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 188 ILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 999988776655432 11 2567777776544
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=92.25 E-value=0.17 Score=52.83 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=34.3
Q ss_pred eEEeeHHHHHhcccCC-CCCC-CCCCCCCeEEEEeccCCC-CCccEEEechHHHHHH
Q 009160 225 WKITSFADVQILGREN-PVDA-DYPVSADVAVIMYTSGST-GLPKGVMMTHGNVLAT 278 (541)
Q Consensus 225 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~a~i~~TSGTT-G~PKgV~~th~~l~~~ 278 (541)
+.+.+|+++...-... .-+. ....++.+.+..-||||| |.+|-+.+|...+-..
T Consensus 66 VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 66 VPIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 4566777764211100 0011 123456677899999999 7799999999987553
No 39
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.18 E-value=1.7 Score=43.77 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=82.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...|+.++|++....+- ....+...++++..|+..++++.. .++++...+++.++++
T Consensus 107 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 185 (437)
T 2y27_A 107 VVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDI 185 (437)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSE
T ss_pred EEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCE
Confidence 3568999998888888887878899999999998885 344455678889999999877654 7889999999999999
Q ss_pred EEECccchhHHHHhhc--C----CCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLSG--Q----LDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~~--~----~~~~~~ii~~~~~ 211 (541)
++..+..+..+.+... . ...++.+++-.+.
T Consensus 186 l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 186 IMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp EEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 9999887766654321 1 2567777775544
No 40
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.80 E-value=1.5 Score=44.05 Aligned_cols=107 Identities=11% Similarity=-0.052 Sum_probs=84.0
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--cHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..++..+...++.++|++..+.+- ....+..+++++..|+..++.++. .++.+...+++.++++
T Consensus 103 ~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~ 181 (436)
T 3qov_A 103 VIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTA 181 (436)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCE
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCE
Confidence 4578999999988888888888899999999998874 345556678889999998877654 6789999999999999
Q ss_pred EEECccchhHHHHhh--c----CCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS--G----QLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~--~----~~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. . .+..++.+++-.+.
T Consensus 182 ~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 182 LHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp EECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred EEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 999988776665432 1 14567777776554
No 41
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=82.10 E-value=12 Score=38.79 Aligned_cols=106 Identities=15% Similarity=0.054 Sum_probs=75.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH--HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+......+...++.+++++..+++-... +...+++++ .|+..+.++ ...++.+...+++.++++
T Consensus 209 gv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 286 (548)
T 2d1s_A 209 GVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTS 286 (548)
T ss_dssp CEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEE
T ss_pred EEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcE
Confidence 3578999988776655544333578899999888876532 333456777 999888775 567899999999999999
Q ss_pred EEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
++.....+..+.+.. ..++.++.+++-.+.
T Consensus 287 ~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 287 VILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp EEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred EEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 999988777665432 235667777765443
No 42
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=81.53 E-value=23 Score=35.88 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=74.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH-HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
...+|.+.+...+..... ..++.+++++...+|-.. -.+..+++++..|+..+..+ ...++.+...+++.+++.+
T Consensus 180 gv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 255 (501)
T 3ipl_A 180 AVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD-KFNAEQILTMIKNERITHI 255 (501)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHSCCCEE
T ss_pred EEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-CCCHHHHHHHHHHcCCcEE
Confidence 356899988877665544 348899999998888652 23344677888899888765 4688999999999999999
Q ss_pred EECccchhHHHHhhc-CCCCccEEEEecC
Q 009160 183 ICGSKELKKLVDLSG-QLDTVKHVICMDA 210 (541)
Q Consensus 183 i~~~~~~~~~~~~~~-~~~~~~~ii~~~~ 210 (541)
+.....+..+.+... ....++.+++-.+
T Consensus 256 ~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 256 SLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp EECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred EchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 999888776655432 2225666665443
No 43
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=80.33 E-value=27 Score=35.88 Aligned_cols=105 Identities=10% Similarity=-0.084 Sum_probs=76.8
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH--HHHH-HHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~--e~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+...... .++.+++++...+|-+. .+.. .+++++..|+..+..+ ...++.+...+++.++
T Consensus 198 KgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~ 273 (539)
T 1mdb_A 198 KLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSP-SPSPDDAFPLIEREKV 273 (539)
T ss_dssp CEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS-SSSHHHHHHHHHHHTC
T ss_pred cEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECC-CCCHHHHHHHHHHcCC
Confidence 34578999887776655443 47889999988888653 3333 5788899999888765 4678999999999999
Q ss_pred eEEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
++++.....+..+.+.. ..++.++.+++-.+.
T Consensus 274 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp SEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred eEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 99999888776654432 345677877775544
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=77.35 E-value=10 Score=36.76 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=63.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCC--cHHHHHHHHHHHhCCcEEEeccCCCCHH--------------
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADT--RAEWFVALQGCFRRNVTVVTIYASLGEE-------------- 168 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~n--s~e~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 168 (541)
..+|.+.+...+...+..+...|+.++|++..+++- ..--+...++++..|+.+++.+ ..+.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhh
Confidence 467888888888777777777799999999999886 2233444555588898655543 3344
Q ss_pred ---------HHHHHHhhcCceEEEECccchhHH
Q 009160 169 ---------ALCYSLNETEVTTVICGSKELKKL 192 (541)
Q Consensus 169 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 192 (541)
++...+++.++.++++....+..+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 677799999999999987766544
No 45
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=76.28 E-value=24 Score=36.30 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=76.4
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH--HH-HHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~--~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+...+.. .++.++|++...+|-+..+ .. .+++++..|+..+..+. ..++.+...+++.++
T Consensus 207 Kgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~ 282 (544)
T 3o83_A 207 KLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQV 282 (544)
T ss_dssp CEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTC
T ss_pred ceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCC
Confidence 34578999988777665543 4889999999988755433 22 47788899998887654 578889999999999
Q ss_pred eEEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
+.+......+..+.+.. ..++.++.+++-.+.
T Consensus 283 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 283 NMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp CEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred CEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 99999987766654432 234677777775544
No 46
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.70 E-value=33 Score=34.94 Aligned_cols=103 Identities=12% Similarity=0.022 Sum_probs=73.9
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH--HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+...+.. .++.++|++...+|-.... ...+++++ .|+..+..+ ...++.+...+++.++.+
T Consensus 187 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~~-~~~~~~~~~~i~~~~~t~ 261 (517)
T 3r44_A 187 GVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISMP-QFDATKVWSLIVEERVCI 261 (517)
T ss_dssp EEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEECS-SCCHHHHHHHHHHTTCCE
T ss_pred eeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEeC-CCCHHHHHHHHHHhCCeE
Confidence 3578999888777665544 3889999999988865333 22344555 788877664 578899999999999999
Q ss_pred EEECccchhHHHHh----hcCCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDL----SGQLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~----~~~~~~~~~ii~~~~~ 211 (541)
+......+..+... ...++.++.+++-.+.
T Consensus 262 ~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 262 GGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp EEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred EEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 99998877665442 2345677777775544
No 47
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.11 E-value=48 Score=34.64 Aligned_cols=105 Identities=11% Similarity=-0.022 Sum_probs=75.9
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc--HHHHH-HHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFV-ALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns--~e~~~-~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+...... .++.+++++...++-+ ..... .+++++..|+..+.... ..+..+...+++.++
T Consensus 200 KgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~ 275 (617)
T 3rg2_A 200 KLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAAD-PSATLCFPLIEKHQV 275 (617)
T ss_dssp CEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTC
T ss_pred CEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCC
Confidence 34578999887776655544 3788999999988844 33333 47788888988887654 567888899999999
Q ss_pred eEEEECccchhHHHHhh------cCCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS------GQLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~------~~~~~~~~ii~~~~~ 211 (541)
+++......+..+.+.. ..++.++.+++-.+.
T Consensus 276 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 276 NVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred cEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 99999987776654422 145677887776554
No 48
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=71.56 E-value=29 Score=35.76 Aligned_cols=107 Identities=11% Similarity=0.037 Sum_probs=76.7
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH-HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
...+|.+.+...+......+...++.+++++..+++-.. -.+...++++..|+..+.+. ...++.+...+++.+++.+
T Consensus 207 gV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 285 (550)
T 3rix_A 207 GVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSA 285 (550)
T ss_dssp EEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEE
T ss_pred hhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEE
Confidence 357899888776655444433357889999988888553 23445667788898888764 5678999999999999999
Q ss_pred EECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 183 ICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 183 i~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
+.....+..+.+.. ..++.++.+++-.+.
T Consensus 286 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 286 LLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp EECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred EeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 99988776665432 235677777775543
No 49
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=70.88 E-value=23 Score=36.05 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=74.6
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCC--CCCCEEEEEeCCcHHH--HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGH--KKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv--~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
...+|.+.+...+..+.. ..++ .+++++...+|-.... ...+++++..|+..+..+. ..++.+...+++.++
T Consensus 170 gV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~ 245 (504)
T 1t5h_X 170 AAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQV 245 (504)
T ss_dssp EEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTC
T ss_pred EEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCC
Confidence 346888888776655443 3466 7788888888765332 3457788899998887764 678899999999999
Q ss_pred eEEEECccchhHHHHhh-c-----CCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS-G-----QLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~-~-----~~~~~~~ii~~~~~ 211 (541)
++++..+..+..+.... . .++.++.+++-.+.
T Consensus 246 t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 246 TSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp CEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTT
T ss_pred eEEEeChHHHHHHHhhhccccccccCccccEEEEcCCc
Confidence 99999988877665543 1 34667777765443
No 50
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=70.62 E-value=21 Score=34.53 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCCcEEEeecccccceeccCCceeeeccCC--ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc
Q 009160 64 FEQSCKEHGDKYLLGTRQLISRETEVADNGRSFEKLHLG--EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR 141 (541)
Q Consensus 64 ~~~~a~~~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns 141 (541)
++...+-+.|.+|++... .|. +| +...+|++.+...+..++.. .+++++|++..++|-+
T Consensus 28 ~~~~~~w~~d~~a~Il~T----------SGT------TG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~ 88 (358)
T 4gs5_A 28 YDFMEKWLGGAREFVLHT----------SGS------TGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVG 88 (358)
T ss_dssp HHHHHHHHHTCSEEEEEE----------ECT------TSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTT
T ss_pred hhHhhccCCCCCEEEEEC----------Ccc------cccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChH
Confidence 333334467889988653 343 22 33478999988776655543 4889999999888855
Q ss_pred -HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccchhHHHHhh---cCCCCccEEEEecC
Q 009160 142 -AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKELKKLVDLS---GQLDTVKHVICMDA 210 (541)
Q Consensus 142 -~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 210 (541)
.-.+..++..+..|+..+..++... ....+++.+++.+...+..+..+.+.. ..++.++.+++-.+
T Consensus 89 h~~gl~~~~~~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~ 158 (358)
T 4gs5_A 89 YIAGLMMLVRGMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGA 158 (358)
T ss_dssp SHHHHHHHHHHHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSS
T ss_pred HHHHHHHHHHHHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEccc
Confidence 2334445566677777776665433 244678889999998887666654422 23455666666544
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=69.84 E-value=33 Score=34.92 Aligned_cols=105 Identities=7% Similarity=-0.053 Sum_probs=75.2
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH-HHHHHHHHHhCCcEEEeccCC--CCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~ 180 (541)
...+|.+.+...+..+.. ..++.+++++..+++-+.. .+..+++++..|+..+.+... ..++.+...+++.+++
T Consensus 160 gV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 236 (511)
T 3e7w_A 160 GVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLN 236 (511)
T ss_dssp EEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCS
T ss_pred EEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCc
Confidence 347899888776665544 3478899999998886532 344577889999988877653 4678899999999999
Q ss_pred EEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
+++.....+..+.... ..++.++.+++-.+.
T Consensus 237 ~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 237 VWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp EEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred EEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 9999887766554321 234566666665443
No 52
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=67.91 E-value=25 Score=35.79 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=75.2
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH-HHHHHHHHHhCCcEEEeccCC--CCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~ 180 (541)
...+|.+.+...+..... ..++.++|++..+++-+.. .+..+++++..|+..+.+++. ..++.+...+++.+++
T Consensus 161 gv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t 237 (512)
T 3fce_A 161 GVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQ 237 (512)
T ss_dssp EEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCC
T ss_pred eEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCc
Confidence 347899888776655443 3488999999998886532 244577888999998887653 5678899999999999
Q ss_pred EEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
+++........+.... ..++.++.+++-.+.
T Consensus 238 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 238 VWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp EEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred EEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 9999887665543321 234567777765443
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=67.45 E-value=27 Score=35.86 Aligned_cols=106 Identities=9% Similarity=-0.076 Sum_probs=73.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH-HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
...+|.+.+...+.... .....++.++|++...+|-.... +...++++..|+..+..++...++.+...+++.+++++
T Consensus 193 gV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~ 271 (541)
T 1v25_A 193 GVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFT 271 (541)
T ss_dssp EEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEE
T ss_pred EeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEE
Confidence 34688888764433210 11234788899998888854222 23456778889988887777789999999999999999
Q ss_pred EECccchhHHHHhh----cCCCCccEEEEecC
Q 009160 183 ICGSKELKKLVDLS----GQLDTVKHVICMDA 210 (541)
Q Consensus 183 i~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 210 (541)
+.....+..+.+.. ..++.++.+++-.+
T Consensus 272 ~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 272 AGVPTVWLALADYLESTGHRLKTLRRLVVGGS 303 (541)
T ss_dssp EECHHHHHHHHHHHHHHTCCCSSCCEEEECSS
T ss_pred ecchHHHHHHHhhhhccCCcchhccEEEECCC
Confidence 99888776654422 34567777777544
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=67.34 E-value=69 Score=32.36 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=68.6
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH--HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
..+|.+.+...+..... ..++.++|++...+|-... +...+.+++..|..+++. ...++.+...+++.+++++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHHHHHHCCcEE
Confidence 47899988877665554 3488999999998886532 233333455555555543 6788999999999999999
Q ss_pred EECccchhHHHHhh--cCCCCccEEEEec
Q 009160 183 ICGSKELKKLVDLS--GQLDTVKHVICMD 209 (541)
Q Consensus 183 i~~~~~~~~~~~~~--~~~~~~~~ii~~~ 209 (541)
+.....+..+.+.. ..++.++.++...
T Consensus 253 ~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 253 AEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp EEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred EecHHHHHHHHhcccccchhhhheecccC
Confidence 98887776665432 3345666666543
No 55
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=65.92 E-value=38 Score=35.83 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=72.9
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH-H-HHHHHHHhCCcEEEeccCC---CCHHHHHHHHhhcCc
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-F-VALQGCFRRNVTVVTIYAS---LGEEALCYSLNETEV 179 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~-~-~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~ 179 (541)
..+|.+.+...+..... ...+++++|++....+-+... . ..+++.+..|++.+..+.. ..++++..++++.++
T Consensus 274 V~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v 351 (652)
T 1pg4_A 274 VLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQV 351 (652)
T ss_dssp EEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTC
T ss_pred EEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCC
Confidence 46787776544322111 225788999998887765332 2 4467899999998877642 467899999999999
Q ss_pred eEEEECccchhHHHHhhc------CCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLSG------QLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~~------~~~~~~~ii~~~~~ 211 (541)
+++++....+..+.+... .++.++.+++-.+.
T Consensus 352 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 352 NILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp SEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred eEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 999999887776654321 35677777776554
No 56
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=65.45 E-value=48 Score=34.28 Aligned_cols=105 Identities=7% Similarity=0.085 Sum_probs=71.9
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH--HHHHHHHHhCCcEEEeccC-CCCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYA-SLGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~ 180 (541)
...+|.+ +........ ....++.++|++..+++-+... ...+++.+..|+..+.... ...++.+...+++.+++
T Consensus 223 gV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t 299 (570)
T 3c5e_A 223 MAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIK 299 (570)
T ss_dssp EEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCC
T ss_pred EEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCe
Confidence 3468888 443111111 2445889999998888865433 3356778888988777654 67899999999999999
Q ss_pred EEEECccchhHHHHhh---cCCCCccEEEEecCC
Q 009160 181 TVICGSKELKKLVDLS---GQLDTVKHVICMDAN 211 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~~---~~~~~~~~ii~~~~~ 211 (541)
+++.....+..+.+.. ..++.++.+++-.+.
T Consensus 300 ~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 300 SMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp EEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred EEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 9999988776665431 134667777776544
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=65.07 E-value=38 Score=35.07 Aligned_cols=106 Identities=4% Similarity=-0.061 Sum_probs=76.0
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH--HHHHHHHHhCCcEEEeccCCC---CHHHHHHHHhhc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASL---GEEALCYSLNET 177 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~v~l~~~~---~~~~l~~~l~~~ 177 (541)
+...+|.+.+...+..... ..++.+++++..++|-.... ...+++++..|+..+.+.+.. .++.+...+++.
T Consensus 183 KgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~ 259 (590)
T 3kxw_A 183 KGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKY 259 (590)
T ss_dssp CEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHH
T ss_pred eEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHh
Confidence 3457899999887766554 34889999999998876443 334778888999888776542 577888999999
Q ss_pred CceEEEECccchhHHHHhh-------cCCCCccEEEEecCC
Q 009160 178 EVTTVICGSKELKKLVDLS-------GQLDTVKHVICMDAN 211 (541)
Q Consensus 178 ~~~~vi~~~~~~~~~~~~~-------~~~~~~~~ii~~~~~ 211 (541)
+++++.+.......+.+.. ..++.++.+++-.+.
T Consensus 260 ~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 260 KATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp TCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred CCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 9999988776665554321 235667777765544
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=62.53 E-value=34 Score=35.01 Aligned_cols=107 Identities=9% Similarity=0.029 Sum_probs=75.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeCCcH--HHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 180 (541)
...+|.+.+...+........ ..++.+++++...+|-.. .+...+++.+..|+..+.++ ...++.+...+++.+++
T Consensus 195 gv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~t 273 (536)
T 3ni2_A 195 GVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMP-KFEIGSLLGLIEKYKVS 273 (536)
T ss_dssp EEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECS-SCCHHHHHHHHHHHTCC
T ss_pred HHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcC-CCCHHHHHHHHHHhCCe
Confidence 347899888766544433222 236788999998888653 33345677888898888765 56788999999999999
Q ss_pred EEEECccchhHHHHh----hcCCCCccEEEEecCC
Q 009160 181 TVICGSKELKKLVDL----SGQLDTVKHVICMDAN 211 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~----~~~~~~~~~ii~~~~~ 211 (541)
++......+..+.+. ...++.++.+++-.+.
T Consensus 274 ~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~ 308 (536)
T 3ni2_A 274 IAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAP 308 (536)
T ss_dssp EEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSC
T ss_pred EEEccHHHHHHHHhCcccccCCCccceEEEECCCC
Confidence 999988776665442 1345677877776554
No 59
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=61.23 E-value=57 Score=34.21 Aligned_cols=122 Identities=13% Similarity=0.066 Sum_probs=84.6
Q ss_pred cCCCCcEEEeecccccceeccCCceeeeccCC--ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH-HHHH
Q 009160 71 HGDKYLLGTRQLISRETEVADNGRSFEKLHLG--EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVA 147 (541)
Q Consensus 71 ~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e-~~~~ 147 (541)
.|+.+|++... .|. +| +...+|.+.+...+.. ....++.+++++..+++-+.. .+..
T Consensus 162 ~~~d~a~iiyT----------SGS------TG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~ 221 (620)
T 4dg8_A 162 AADQIAYINFS----------SGT------TGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLE 221 (620)
T ss_dssp CTTSEEEEEEE----------BSS------SSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHH
T ss_pred CCCCeEEEEEC----------CCc------cccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHH
Confidence 46777877643 343 22 3346888877543322 233488999999998886533 3445
Q ss_pred HHHHHhCCcEEEecc-CCCCHHHHHHHHhhcCceEEEECccchhHHHHh-hcCCCCccEEEEecCCC
Q 009160 148 LQGCFRRNVTVVTIY-ASLGEEALCYSLNETEVTTVICGSKELKKLVDL-SGQLDTVKHVICMDANI 212 (541)
Q Consensus 148 ~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~ii~~~~~~ 212 (541)
+++.+..|+..+..+ ....++.+...+++.+++.++.....+..+.+. ...++.++.+++-.+.-
T Consensus 222 ~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 222 IWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp HHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred HHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 678889999887764 356789999999999999999988877666543 24567788888766553
No 60
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=60.91 E-value=41 Score=35.60 Aligned_cols=105 Identities=9% Similarity=-0.015 Sum_probs=69.8
Q ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH-HH-HHHHHHHhCCcEEEeccCC---CCHHHHHHHHhhcCc
Q 009160 105 EWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WF-VALQGCFRRNVTVVTIYAS---LGEEALCYSLNETEV 179 (541)
Q Consensus 105 ~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e-~~-~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~~ 179 (541)
..+|...+...+.... -...++.++|++....+-+.. +. ..+++.+..|++.+..+.. ..++++..++++.++
T Consensus 280 V~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~v 357 (663)
T 1ry2_A 280 VQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKV 357 (663)
T ss_dssp EEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTC
T ss_pred EEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCC
Confidence 3567776654332211 123588999998887775532 22 4457888999988877642 367899999999999
Q ss_pred eEEEECccchhHHHHhhc------CCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLSG------QLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~~------~~~~~~~ii~~~~~ 211 (541)
+++++.+..+..+.+... .++.++.+++..+.
T Consensus 358 t~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 395 (663)
T 1ry2_A 358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEP 395 (663)
T ss_dssp SEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSC
T ss_pred CEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCC
Confidence 999999877666544321 34567777765543
No 61
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=55.65 E-value=42 Score=34.57 Aligned_cols=108 Identities=9% Similarity=-0.103 Sum_probs=75.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHH-----hcCCCCCCEEEEEeCCcHH-HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhc
Q 009160 104 YEWLTYGQAFETICNFASGLA-----QLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYASLGEEALCYSLNET 177 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~-----~~gv~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~ 177 (541)
...+|.+.+...+..++..+. ...+...+++....+.... .+..++.++..|+..+........+.+...+++.
T Consensus 192 gV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~ 271 (562)
T 3ite_A 192 GVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFREL 271 (562)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHT
T ss_pred EEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHc
Confidence 346899999888877776654 2356777888777776543 3344667888898887665444456788899999
Q ss_pred CceEEEECccchhHHHHhhcCCCCccEEEEecCC
Q 009160 178 EVTTVICGSKELKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 178 ~~~~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
+++.+......+..+......++.++.+++-.+.
T Consensus 272 ~~t~~~~~P~~l~~~~~~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 272 GVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp TCCEEEECHHHHHHHTCCGGGSTTCCEEEEESSC
T ss_pred CCCEEEcCHHHHhhcccCccccCceEEEEEecCC
Confidence 9999999887665544334456778877776544
No 62
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=54.23 E-value=52 Score=31.41 Aligned_cols=67 Identities=6% Similarity=-0.079 Sum_probs=47.9
Q ss_pred HHHHhcC-CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 121 SGLAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 121 ~~L~~~g-v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
....+.| +++|+.|.+....+-.-..+.++|...|..++.+-|.-.+..-...++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344555 488888756666677777888888888987665555544455567788999999999864
No 63
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=54.13 E-value=57 Score=33.62 Aligned_cols=104 Identities=13% Similarity=-0.012 Sum_probs=74.9
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH-HHHHHHHHHHhCCcEEEeccC-CCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA-EWFVALQGCFRRNVTVVTIYA-SLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~-e~~~~~lA~~~~G~~~v~l~~-~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+.. ....++.+++++..+++-+. -....+++++..|+..+.... ...++.+...+++.++++
T Consensus 231 gV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~ 306 (570)
T 4gr5_A 231 GVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTM 306 (570)
T ss_dssp CEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCE
T ss_pred EEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcE
Confidence 347888877543221 22347889999998888653 344567788889998887764 467889999999999999
Q ss_pred EEECccchhHHHHh-hcCCCCccEEEEecCC
Q 009160 182 VICGSKELKKLVDL-SGQLDTVKHVICMDAN 211 (541)
Q Consensus 182 vi~~~~~~~~~~~~-~~~~~~~~~ii~~~~~ 211 (541)
+......+..+.+. ...++.++.+++-.+.
T Consensus 307 ~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 307 LQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp EEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred EEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 99988877666543 3456778888776654
No 64
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=54.01 E-value=99 Score=31.58 Aligned_cols=104 Identities=13% Similarity=-0.051 Sum_probs=75.5
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH-HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
...+|.+.+...+..++.. .++.++|++..++|-.... +..++.++..|+..+.+. ...++.+...+++.+++++
T Consensus 197 gV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~ 272 (549)
T 3g7s_A 197 GVMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFS 272 (549)
T ss_dssp EEEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEE
T ss_pred eEEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEE
Confidence 3578999998877766554 3788999998888754322 233667778888887765 6688999999999999999
Q ss_pred EECccchhHHHHhh------cCCCCccEEEEecCC
Q 009160 183 ICGSKELKKLVDLS------GQLDTVKHVICMDAN 211 (541)
Q Consensus 183 i~~~~~~~~~~~~~------~~~~~~~~ii~~~~~ 211 (541)
+.....+..+.+.. ..++.++.+++-...
T Consensus 273 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~ 307 (549)
T 3g7s_A 273 WAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWP 307 (549)
T ss_dssp EECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSC
T ss_pred EeCCHHHHHHHhhhhhhcccCCccceeEEEeCCcc
Confidence 99988776665432 234567777765543
No 65
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=52.64 E-value=58 Score=33.75 Aligned_cols=86 Identities=13% Similarity=0.063 Sum_probs=62.8
Q ss_pred cCCCCCCEEEEEeCCcHH--HHHHHHHHHhCCcEEEecc-CCCCHHHHHHHHhhcCceEEEECccchhHHHHhh---cCC
Q 009160 126 LGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIY-ASLGEEALCYSLNETEVTTVICGSKELKKLVDLS---GQL 199 (541)
Q Consensus 126 ~gv~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~v~l~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~ 199 (541)
.++.+++++....+.+.. .+..+++.+..|+..+..+ ....++++...+++.+++.+++....+..+.... ..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l 340 (580)
T 3etc_A 261 QNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNF 340 (580)
T ss_dssp SCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CC
T ss_pred hCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCC
Confidence 478889988887776533 3334678889999888775 5678899999999999999999887766654421 134
Q ss_pred CCccEEEEecCC
Q 009160 200 DTVKHVICMDAN 211 (541)
Q Consensus 200 ~~~~~ii~~~~~ 211 (541)
+.++.+++-.+.
T Consensus 341 ~~lr~i~~gGe~ 352 (580)
T 3etc_A 341 STLKYAVVAGEP 352 (580)
T ss_dssp TTCCEEEECSSC
T ss_pred ccceEEEEccCC
Confidence 567777765544
No 66
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=51.28 E-value=75 Score=32.15 Aligned_cols=86 Identities=12% Similarity=0.063 Sum_probs=63.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceE
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTT 181 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 181 (541)
...+|.+.+...+..+...+ ++.++|++...++-. ..++..+++.+..|+..+... ...++.+...+ +.+++.
T Consensus 172 gV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i-~~~~t~ 246 (505)
T 3nyq_A 172 GAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG-RFSTEGAAREL-NDGATM 246 (505)
T ss_dssp EEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS-SCCHHHHHHHH-TTTCCE
T ss_pred eEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC-CCChHHHHHHH-hhCCeE
Confidence 35789999888877666554 788899988877754 233445788889999887664 56677777777 679999
Q ss_pred EEECccchhHHHH
Q 009160 182 VICGSKELKKLVD 194 (541)
Q Consensus 182 vi~~~~~~~~~~~ 194 (541)
++.....+..+.+
T Consensus 247 ~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 247 LFGVPTMYHRIAE 259 (505)
T ss_dssp EEECHHHHHHHHH
T ss_pred EEehHHHHHHHHH
Confidence 9988877665544
No 67
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=50.49 E-value=4.6 Score=41.99 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred eEEeeHHHHHhcccC--CCCCCCCCCCCCeEEEEeccCCC-CCccEEEechHHHHH
Q 009160 225 WKITSFADVQILGRE--NPVDADYPVSADVAVIMYTSGST-GLPKGVMMTHGNVLA 277 (541)
Q Consensus 225 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTT-G~PKgV~~th~~l~~ 277 (541)
+.+.+|+++...-.. .-.......++.+.++.-||||| |.+|-+.+|...+-.
T Consensus 71 VPi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 71 VPLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp SCCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 556677776432110 00011233556677899999999 779999999998765
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=50.44 E-value=56 Score=33.72 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=70.8
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH-HHHHHHHHHhCCcEEEeccCC--CCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE-WFVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e-~~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~ 180 (541)
...+|.+.+...+.... ...++.++|++..+++-+.. .+..++.++..|+..+.+... ..++.+...+++.+++
T Consensus 199 gV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t 275 (563)
T 1amu_A 199 GTMLEHKGISNLKVFFE---NSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEIT 275 (563)
T ss_dssp EEEEESHHHHHHHHHHH---HTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCC
T ss_pred EEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCc
Confidence 34688888865544333 33488999999988875532 234567788899988776543 4678899999999999
Q ss_pred EEEECccchhHHHHhhcCCCCccEEEEecCC
Q 009160 181 TVICGSKELKKLVDLSGQLDTVKHVICMDAN 211 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 211 (541)
++.........+.. .....++.+++-.+.
T Consensus 276 ~~~~~P~~~~~l~~--~~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 276 VITLPPTYVVHLDP--ERILSIQTLITAGSA 304 (563)
T ss_dssp EEEECHHHHTTSCT--TTCCSCSEEEEESSC
T ss_pred EEEeCHHHHHHHHh--cccccccEEEEEEec
Confidence 99988765443322 234667777765544
No 69
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=48.72 E-value=75 Score=31.64 Aligned_cols=104 Identities=5% Similarity=-0.070 Sum_probs=71.0
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCC------CCEEEEEeCCcH--HHHHHHHHHHhCCcEEEeccCC---CCHHHHH
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKK------EERVAIFADTRA--EWFVALQGCFRRNVTVVTIYAS---LGEEALC 171 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~------g~~V~i~~~ns~--e~~~~~lA~~~~G~~~v~l~~~---~~~~~l~ 171 (541)
+...+|.+.+...+......+ ++.+ ++++...+|-.- .++..+++++..|+..+..++. ..++.+.
T Consensus 199 KgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~ 275 (480)
T 3t5a_A 199 AGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWM 275 (480)
T ss_dssp CCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHH
T ss_pred cEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHH
Confidence 345799999988777766655 3444 888888888653 3455678889999988887654 3678899
Q ss_pred HHHhhcCceEEEECccchhHHHHh--------hcCCCCccEEEEecC
Q 009160 172 YSLNETEVTTVICGSKELKKLVDL--------SGQLDTVKHVICMDA 210 (541)
Q Consensus 172 ~~l~~~~~~~vi~~~~~~~~~~~~--------~~~~~~~~~ii~~~~ 210 (541)
..+++.++. ++........+... ...++.++.+++-.+
T Consensus 276 ~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~ 321 (480)
T 3t5a_A 276 HLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSE 321 (480)
T ss_dssp HHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCT
T ss_pred HHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCC
Confidence 999999999 55545444333221 123566777776543
No 70
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=46.18 E-value=7.3 Score=40.77 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=26.8
Q ss_pred CCCCCeEEEEeccCCC-CCccEEEechHHHHHH
Q 009160 247 PVSADVAVIMYTSGST-GLPKGVMMTHGNVLAT 278 (541)
Q Consensus 247 ~~~~~~a~i~~TSGTT-G~PKgV~~th~~l~~~ 278 (541)
..++.+.++.-||||| |.||-+.+|...+-..
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 3556778999999999 7899999999987653
No 71
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.95 E-value=82 Score=35.04 Aligned_cols=108 Identities=11% Similarity=0.024 Sum_probs=75.7
Q ss_pred ccEEeeHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEeCCc--HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLA-QLGHKKEERVAIFADTR--AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~-~~gv~~g~~V~i~~~ns--~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+........ ..++.+++++...+|-. ..+...++..+..|+..+..+ ...++.+...+++.++
T Consensus 241 KgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~-~~~~~~~~~~i~~~~~ 319 (979)
T 3tsy_A 241 KGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMP-KFEINLLLELIQRCKV 319 (979)
T ss_dssp CBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECS-SCCHHHHHHHHHHHTC
T ss_pred eEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeC-CCCHHHHHHHHHHhCC
Confidence 3457899988776554433222 23678899998888854 334455677888898888664 5678899999999999
Q ss_pred eEEEECccchhHHHHhh----cCCCCccEEEEecCC
Q 009160 180 TTVICGSKELKKLVDLS----GQLDTVKHVICMDAN 211 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~~ 211 (541)
+++......+..+.+.. ..++.++.+++-.+.
T Consensus 320 t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~ 355 (979)
T 3tsy_A 320 TVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP 355 (979)
T ss_dssp CEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred eEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence 99999887766654432 235677777775544
No 72
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=43.67 E-value=1e+02 Score=29.54 Aligned_cols=65 Identities=5% Similarity=-0.088 Sum_probs=48.7
Q ss_pred HHhcC-CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 123 L~~~g-v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
+.+.| +++|.+..+....+-.-+...++|.+.|..++.+=|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444 677877667777788888888999999987655555555555677889999999999754
No 73
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=42.42 E-value=1.2e+02 Score=30.92 Aligned_cols=106 Identities=6% Similarity=-0.081 Sum_probs=72.4
Q ss_pred cEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcH--HHHHHHHHHHhCCcEEEeccCC---CCHHHHHHHHhhcC
Q 009160 104 YEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRA--EWFVALQGCFRRNVTVVTIYAS---LGEEALCYSLNETE 178 (541)
Q Consensus 104 ~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~--e~~~~~lA~~~~G~~~v~l~~~---~~~~~l~~~l~~~~ 178 (541)
...+|.+.+...+..+... ..++.++|++...++-.. .++..+++.+..|+..+.+.+. ..++.+...+++.+
T Consensus 193 gV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~ 270 (576)
T 3gqw_A 193 GVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNR 270 (576)
T ss_dssp CEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTT
T ss_pred eEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhC
Confidence 4578999887665544321 258899999998888654 3444567788888887776542 45678899999999
Q ss_pred ceEEEECccchhHHHHhh-------cCCCCccEEEEecCC
Q 009160 179 VTTVICGSKELKKLVDLS-------GQLDTVKHVICMDAN 211 (541)
Q Consensus 179 ~~~vi~~~~~~~~~~~~~-------~~~~~~~~ii~~~~~ 211 (541)
++++++.......+.... ..++.++.+++-.+.
T Consensus 271 ~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 310 (576)
T 3gqw_A 271 GTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEP 310 (576)
T ss_dssp CCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSC
T ss_pred CeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCcc
Confidence 999998876655443221 235666777665443
No 74
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=38.97 E-value=46 Score=33.94 Aligned_cols=88 Identities=13% Similarity=-0.046 Sum_probs=63.3
Q ss_pred cEEeeHHHH-HHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH--HHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCce
Q 009160 104 YEWLTYGQA-FETICNFASGLAQLGHKKEERVAIFADTRAEW--FVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (541)
Q Consensus 104 ~~~~Ty~el-~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 180 (541)
...+|.+.+ ....... ....++.++|++...++-...+ ...++..+..|+..+.+++...++.+...+++.+++
T Consensus 200 gv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t 276 (529)
T 2v7b_A 200 GTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT 276 (529)
T ss_dssp EEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCS
T ss_pred eEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCE
Confidence 356888887 3322111 1123788999998888865443 334567888999988887778899999999999999
Q ss_pred EEEECccchhHHHH
Q 009160 181 TVICGSKELKKLVD 194 (541)
Q Consensus 181 ~vi~~~~~~~~~~~ 194 (541)
+++.....+..+..
T Consensus 277 ~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 277 VFYGVPTLYANMLV 290 (529)
T ss_dssp EEEECHHHHHHHHT
T ss_pred EEEecHHHHHHHHh
Confidence 99998876655543
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=37.56 E-value=2.2e+02 Score=28.56 Aligned_cols=107 Identities=5% Similarity=-0.056 Sum_probs=72.7
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH-HHHHHHHHhCCcEEEeccCC--CCHHHHHHHHhhcCc
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVALQGCFRRNVTVVTIYAS--LGEEALCYSLNETEV 179 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~ 179 (541)
+...+|.+.+...+..+.... ..++.+++++....+-+... +..+++++..|+..+.++.. ...+++...+++.++
T Consensus 161 KgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~ 239 (521)
T 3l8c_A 161 KGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPV 239 (521)
T ss_dssp CEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCC
T ss_pred CEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCC
Confidence 345789998876655443321 24677888888777755333 44567788899988877654 367889999999999
Q ss_pred eEEEECccchhHHHHhh----cCCCCccEEEEecC
Q 009160 180 TTVICGSKELKKLVDLS----GQLDTVKHVICMDA 210 (541)
Q Consensus 180 ~~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 210 (541)
.++.........+.... ..++.++.+++-.+
T Consensus 240 t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 240 GIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGE 274 (521)
T ss_dssp SEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred cEEEeCCCHHHHHhhhhccccccCccceEEEEecc
Confidence 99999887765544322 23456777666443
No 76
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=34.50 E-value=1.8e+02 Score=29.10 Aligned_cols=102 Identities=8% Similarity=0.017 Sum_probs=68.8
Q ss_pred ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHH--HHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCce
Q 009160 103 EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAE--WFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVT 180 (541)
Q Consensus 103 ~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e--~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 180 (541)
+...+|.+.+...+..+... .++.++|++...+|-... +....+.++..|+..+.+. ...++.+...++ +++
T Consensus 171 KgV~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~-~~~~~~~~~~i~--~~t 244 (503)
T 4fuq_A 171 KGAMLSHDNLASNSLTLVDY---WRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLP-KFDPDKILDLMA--RAT 244 (503)
T ss_dssp CEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECS-SCCHHHHHHHHT--TCC
T ss_pred eEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcC-CCCHHHHHHHHh--hcC
Confidence 34578999888776655543 478999999888875422 2344566777888777665 567888888887 788
Q ss_pred EEEECccchhHHHHhh----cCCCCccEEEEecC
Q 009160 181 TVICGSKELKKLVDLS----GQLDTVKHVICMDA 210 (541)
Q Consensus 181 ~vi~~~~~~~~~~~~~----~~~~~~~~ii~~~~ 210 (541)
+++.....+..+.... ...+.++.+++-.+
T Consensus 245 ~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~ 278 (503)
T 4fuq_A 245 VLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSA 278 (503)
T ss_dssp EEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSS
T ss_pred EEEEHHHHHHHHHhCCCccccchhhcEEEEECCC
Confidence 8888777665554422 12445666666443
No 77
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=32.24 E-value=1.8e+02 Score=28.81 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=46.3
Q ss_pred HHhcC-CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECc
Q 009160 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 123 L~~~g-v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 186 (541)
..+.| +++|....+....+-.-....++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46776555666667777788888999998766555554555667788999999999975
No 78
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=31.86 E-value=1.9e+02 Score=27.03 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=43.9
Q ss_pred HHhcC-CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 123 L~~~g-v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
+.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++.+
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34455 456654444456667777777788899987666554434455566788899999999864
No 79
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=31.05 E-value=1.1e+02 Score=35.24 Aligned_cols=121 Identities=7% Similarity=0.050 Sum_probs=82.1
Q ss_pred cCCCCcEEEeecccccceeccCCceeeeccCC--ccEEeeHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCcHHH-HHH
Q 009160 71 HGDKYLLGTRQLISRETEVADNGRSFEKLHLG--EYEWLTYGQAFETICNFASGLAQLGHKKEERVAIFADTRAEW-FVA 147 (541)
Q Consensus 71 ~p~~~al~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~Ty~el~~~~~~la~~L~~~gv~~g~~V~i~~~ns~e~-~~~ 147 (541)
.|+.+|++... .|. +| +...+|.+.+... .......++.+++++..+.+-+.+. +.-
T Consensus 605 ~~~~~ayiiyT----------SGS------TG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~ 664 (1304)
T 2vsq_A 605 DPNDPAYIMYT----------SGT------TGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFD 664 (1304)
T ss_dssp CTTSEEEEEEE----------CCS------SSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHH
T ss_pred CCCCeEEEEeC----------CCC------CCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHH
Confidence 46778887643 443 23 3346888877532 1222334788999998888766443 345
Q ss_pred HHHHHhCCcEEEeccC--CCCHHHHHHHHhhcCceEEEECccchhHHHHhh-cCCCCccEEEEecCC
Q 009160 148 LQGCFRRNVTVVTIYA--SLGEEALCYSLNETEVTTVICGSKELKKLVDLS-GQLDTVKHVICMDAN 211 (541)
Q Consensus 148 ~lA~~~~G~~~v~l~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~ii~~~~~ 211 (541)
+++.+..|+..+..++ ...++.+...+++.++++++.....+..+.+.. ..++.++.+++-++.
T Consensus 665 ~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 665 FYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp HHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred HHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 6788899998887765 357889999999999999998887776654421 223566777776554
No 80
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=30.53 E-value=1.3e+02 Score=28.08 Aligned_cols=76 Identities=21% Similarity=0.104 Sum_probs=48.3
Q ss_pred eeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEE
Q 009160 107 LTYGQAFETICN---FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (541)
Q Consensus 107 ~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 183 (541)
+++.+....... .-+.|...++++|++|+|....+.--.++...+...|+.++.+. +.++ ...+++.+++.++
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~---~~~~-~~~~~~lGa~~~i 201 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA---SKRN-HAFLKALGAEQCI 201 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---CHHH-HHHHHHHTCSEEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe---ccch-HHHHHHcCCCEEE
Confidence 466665443222 12334455899999999997566555555555567788766554 3455 5667778888777
Q ss_pred ECc
Q 009160 184 CGS 186 (541)
Q Consensus 184 ~~~ 186 (541)
...
T Consensus 202 ~~~ 204 (321)
T 3tqh_A 202 NYH 204 (321)
T ss_dssp ETT
T ss_pred eCC
Confidence 543
No 81
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=30.09 E-value=2.3e+02 Score=26.40 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=43.1
Q ss_pred HHHHhcCC-CCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 121 SGLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 121 ~~L~~~gv-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
..+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 56 ~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 56 QAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 33444553 56665544 55556666667777889987666555443444566778899999999863
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=28.76 E-value=2.9e+02 Score=25.87 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=51.4
Q ss_pred eeHHHHHHHHHHH---HHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEE
Q 009160 107 LTYGQAFETICNF---ASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (541)
Q Consensus 107 ~Ty~el~~~~~~l---a~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 183 (541)
+++.+........ -+.+...++++|++|.|...-+.-.+++.+|....|+.++.++.. +++ ....++.+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEEE
Confidence 5666654433322 233555689999999999887777777777777778777776654 344 4566778888777
Q ss_pred ECc
Q 009160 184 CGS 186 (541)
Q Consensus 184 ~~~ 186 (541)
-..
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 543
No 83
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=27.97 E-value=2.4e+02 Score=26.09 Aligned_cols=65 Identities=8% Similarity=-0.030 Sum_probs=41.7
Q ss_pred HHHhcCC-CCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 122 GLAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 122 ~L~~~gv-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
.+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 55 ~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 55 AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344453 56665544 55555666667778889987655544433344555678899999999864
No 84
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=27.36 E-value=1.8e+02 Score=27.46 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEeCCcH------HHHHHHHH-HHhCCcEEEeccCCC------------CHHHHHHHHhhcCceEEEECc
Q 009160 127 GHKKEERVAIFADTRA------EWFVALQG-CFRRNVTVVTIYASL------------GEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 127 gv~~g~~V~i~~~ns~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 186 (541)
-+++||+|+|++|.+. +-+-.... +-..|..++.-..-. ..+++..++.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999999752 22222222 345677766543211 235677778888999999864
No 85
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=26.73 E-value=2.2e+02 Score=27.00 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=41.3
Q ss_pred HHhcCC-CCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 123 LAQLGH-KKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 123 L~~~gv-~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
+.+.|. ++|+.|.... .+-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334453 6666555544 355555666677788886655544434445566788899999999863
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.31 E-value=2e+02 Score=27.39 Aligned_cols=60 Identities=8% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCCCCCEEEEEeCCcH------HHHHHHHH-HHhCCcEEEeccCC------------CCHHHHHHHHhhcCceEEEECc
Q 009160 127 GHKKEERVAIFADTRA------EWFVALQG-CFRRNVTVVTIYAS------------LGEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 127 gv~~g~~V~i~~~ns~------e~~~~~lA-~~~~G~~~v~l~~~------------~~~~~l~~~l~~~~~~~vi~~~ 186 (541)
-+++||+|+|++|.+. +-+-.... +-..|..++.-... ...+++...+.+-++++|+|..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999883 22222232 33478877653211 1235677777788889999864
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=26.06 E-value=1.7e+02 Score=28.18 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=37.6
Q ss_pred HHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccC-----CCCHHHHHHHHhhcC--ceEEEE
Q 009160 123 LAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYA-----SLGEEALCYSLNETE--VTTVIC 184 (541)
Q Consensus 123 L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~-----~~~~~~l~~~l~~~~--~~~vi~ 184 (541)
|...++++||.|.+-.+..... ..++...|+.++.++. ....+++...+...+ .++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 4445778999988777655443 3455677887655543 246788888774334 666664
No 88
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=25.89 E-value=1.8e+02 Score=27.70 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=41.4
Q ss_pred HHHh-cCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEE-EeccCCCCHHHHHHHHhhcCceEEEEC
Q 009160 122 GLAQ-LGHKKEERVAIFADTRAEWFVALQGCFRRNVTV-VTIYASLGEEALCYSLNETEVTTVICG 185 (541)
Q Consensus 122 ~L~~-~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~-v~l~~~~~~~~l~~~l~~~~~~~vi~~ 185 (541)
.|.+ .++++|++|.|....+.--.++...+-..|+.. +..+..-..++....+++.+++.++..
T Consensus 158 ~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~ 223 (357)
T 1zsy_A 158 MLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITE 223 (357)
T ss_dssp HHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEH
T ss_pred HHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEec
Confidence 3444 389999999999985554444444445568744 444444444555566778898888754
No 89
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=24.93 E-value=1e+02 Score=27.13 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHhhcCceEEe----CCcccccccchhhhcCcccccccccceEEee------cHHH--HHHHHHHHHHhh
Q 009160 303 HVLELVA-ENLIAGVGSAIGY----GTPLTLTDTSSKIKKGTQGDASVLRPTVMAS------VPAI--LDRVRDGVRKKV 369 (541)
Q Consensus 303 h~~~~~~-~~~~l~~G~~v~~----~~~~~l~~~~~~~~~~~~~~i~~~~~t~~~~------~P~~--~~~l~~~~~~~~ 369 (541)
|..|... ....-..|..+.+ .++..+.+. +++++|+++.. ++++ +..+.+.+++.
T Consensus 105 HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~-----------~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~- 172 (215)
T 3ezx_A 105 HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEE-----------AAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE- 172 (215)
T ss_dssp CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHH-----------HHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHH-----------HHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc-
Q ss_pred hccCchhHHHHHHHHHHHHhhhcCCCCCCCchhhHHHHHHhHHHHHHHhCCce---EEEEEccCCCCHHHHHHH
Q 009160 370 DAKGGLSKKLFDLAYARRLSAINGSWFGAWGLEKLLWNLLVFSKVRAILGGRI---RFILSGGAPLSADTQRFI 440 (541)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l---r~i~~gg~~l~~~~~~~~ 440 (541)
.+ -.++.||.+++++..+.+
T Consensus 173 ---------------------------------------------------~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 173 ---------------------------------------------------KLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp ---------------------------------------------------TCGGGSEEEEESSSCCHHHHHHH
T ss_pred ---------------------------------------------------CCCCCCEEEEECCCCCHHHHHHh
No 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=24.34 E-value=2.1e+02 Score=27.65 Aligned_cols=60 Identities=8% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCCCCCEEEEEeCCcH------HHHHHHHH-HHhCCcEEEeccCCC------------CHHHHHHHHhhcCceEEEECc
Q 009160 127 GHKKEERVAIFADTRA------EWFVALQG-CFRRNVTVVTIYASL------------GEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 127 gv~~g~~V~i~~~ns~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 186 (541)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+... ..+++...+.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 6899999999999873 22222232 334788776543211 235677777778889999864
No 91
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=24.12 E-value=3e+02 Score=25.78 Aligned_cols=64 Identities=3% Similarity=-0.072 Sum_probs=43.8
Q ss_pred HHhcC-CCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 123 LAQLG-HKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 123 L~~~g-v~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
..+.| +++++.|.-. ..+-.-..+.++|.+.|..++.+-|.-.+..-...++..++++++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4667766554 4566667777778888987665555544555567888999999999863
No 92
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=24.02 E-value=1.7e+02 Score=27.81 Aligned_cols=57 Identities=5% Similarity=0.066 Sum_probs=39.4
Q ss_pred CCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECccc
Q 009160 131 EERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSKE 188 (541)
Q Consensus 131 g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~ 188 (541)
.+.| +....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++...
T Consensus 76 ~~~v-v~~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~ 132 (346)
T 3l6b_A 76 PKAV-VTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSD 132 (346)
T ss_dssp CSCE-EEECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSH
T ss_pred CCEE-EEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCH
Confidence 3443 33345666677778888999866555555445556778899999999998654
No 93
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=23.61 E-value=2.4e+02 Score=27.71 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhc--CCCCCCEEEEEeCCc-HHHHHHHH-HHHhCCcEEEec
Q 009160 113 FETICNFASGLAQL--GHKKEERVAIFADTR-AEWFVALQ-GCFRRNVTVVTI 161 (541)
Q Consensus 113 ~~~~~~la~~L~~~--gv~~g~~V~i~~~ns-~e~~~~~l-A~~~~G~~~v~l 161 (541)
..+.+++|..+.+. ++++|+.|.|..+-. .+++-++. ++..+|+-++.+
T Consensus 5 ~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v 57 (408)
T 2ayi_A 5 KRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTV 57 (408)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEE
Confidence 45667777777765 789999999999855 55555554 688899977754
No 94
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=21.81 E-value=3.7e+02 Score=23.14 Aligned_cols=56 Identities=5% Similarity=-0.084 Sum_probs=42.9
Q ss_pred CEEEEEeCCc----HHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEECcc
Q 009160 132 ERVAIFADTR----AEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICGSK 187 (541)
Q Consensus 132 ~~V~i~~~ns----~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 187 (541)
.+|.+.+..+ .-..+....+-..|.-++-+....+.+++...+++.++++|..+..
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 3555555442 4445555556688999999999999999999999999999987653
No 95
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=20.82 E-value=2.3e+02 Score=26.85 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=39.1
Q ss_pred CCCCCCEEEEEeCCcH------HHHHHHHH-HHhCCcEEEeccCCC------------CHHHHHHHHhhcCceEEEECc
Q 009160 127 GHKKEERVAIFADTRA------EWFVALQG-CFRRNVTVVTIYASL------------GEEALCYSLNETEVTTVICGS 186 (541)
Q Consensus 127 gv~~g~~V~i~~~ns~------e~~~~~lA-~~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 186 (541)
-+++||+|+|++|.+. +-+-.... +-..|..++.-+... ..+++...+.+-++++|+|..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 5789999999999874 22322233 334788776543211 235677777788889999864
No 96
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=20.74 E-value=4.7e+02 Score=24.24 Aligned_cols=56 Identities=18% Similarity=0.121 Sum_probs=39.7
Q ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEEC
Q 009160 127 GHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG 185 (541)
Q Consensus 127 gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 185 (541)
++++|++|.|....+.--.++...+...|+.++.+.. +++++. .+++.+++.++..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 8899999999996665555555555678987777665 345554 5566788877754
No 97
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=20.58 E-value=1.7e+02 Score=27.15 Aligned_cols=73 Identities=14% Similarity=0.045 Sum_probs=45.8
Q ss_pred EeeHHHHHHHHHHHH---HHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEE
Q 009160 106 WLTYGQAFETICNFA---SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTV 182 (541)
Q Consensus 106 ~~Ty~el~~~~~~la---~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 182 (541)
.+++.+.......++ +.|...++++|++|.|... +.--.++...+...|+.++.+. . ++++ ..+++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-A--SLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-S--SCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-C--hhhH-HHHHHcCCCEE
Confidence 357777643333322 3343448999999999999 6555555555556788777666 2 3333 33466888888
Q ss_pred E
Q 009160 183 I 183 (541)
Q Consensus 183 i 183 (541)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 8
No 98
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=20.56 E-value=3e+02 Score=25.68 Aligned_cols=60 Identities=25% Similarity=0.065 Sum_probs=41.9
Q ss_pred HhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEEC
Q 009160 124 AQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVICG 185 (541)
Q Consensus 124 ~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 185 (541)
...++++|++|.|....+.--..+...+...|+.++.+.. +++++....++.+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 3348999999999998665555555556678987666654 35666655577888776653
No 99
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=20.16 E-value=3e+02 Score=25.86 Aligned_cols=73 Identities=11% Similarity=-0.038 Sum_probs=44.5
Q ss_pred eeHHHHHHHHHH---HHHHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEE
Q 009160 107 LTYGQAFETICN---FASGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVI 183 (541)
Q Consensus 107 ~Ty~el~~~~~~---la~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 183 (541)
+++.+....... .-+.|.+.++++|++|.|... +.--.++...+...|+.++.++..- +++. .+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNE--HKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSS--TTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCH--HHHH-HHHhcCCCeec
Confidence 566665422211 123455668999999999886 5444444444556788777666443 2332 45667888887
No 100
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}
Probab=20.12 E-value=5.3e+02 Score=24.02 Aligned_cols=61 Identities=15% Similarity=-0.066 Sum_probs=39.0
Q ss_pred HHHHhcCCCCCCEEEEEeCCcHHHHHHHHHHHhCCcEEEeccCCCCHHHHHHHHhhcCceEEEE
Q 009160 121 SGLAQLGHKKEERVAIFADTRAEWFVALQGCFRRNVTVVTIYASLGEEALCYSLNETEVTTVIC 184 (541)
Q Consensus 121 ~~L~~~gv~~g~~V~i~~~ns~e~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 184 (541)
+.|.+.++++|++|.|....+.--..+...+...|+.++.++.+. +++ ..+++.++..++.
T Consensus 160 ~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~--~~~-~~~~~~g~~~~~d 220 (347)
T 2hcy_A 160 KALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGE--GKE-ELFRSIGGEVFID 220 (347)
T ss_dssp HHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECST--THH-HHHHHTTCCEEEE
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCH--HHH-HHHHHcCCceEEe
Confidence 345556899999999999866544444455556788766666432 333 3445567776664
Done!