Query 009161
Match_columns 541
No_of_seqs 396 out of 1710
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 21:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1718 Dual specificity phosp 100.0 3.7E-32 7.9E-37 251.1 15.0 144 121-265 15-158 (198)
2 smart00195 DSPc Dual specifici 100.0 2.1E-30 4.5E-35 236.2 17.2 138 123-261 1-138 (138)
3 KOG1716 Dual specificity phosp 100.0 8.6E-30 1.9E-34 260.6 18.3 146 121-266 73-220 (285)
4 KOG1717 Dual specificity phosp 100.0 1.9E-29 4.1E-34 247.5 12.3 143 121-264 170-314 (343)
5 cd00127 DSPc Dual specificity 100.0 5.5E-28 1.2E-32 219.3 16.6 138 122-259 1-139 (139)
6 PF00782 DSPc: Dual specificit 100.0 2.3E-28 5E-33 220.9 12.9 131 130-261 1-133 (133)
7 PRK12361 hypothetical protein; 99.9 1.4E-23 3.1E-28 232.6 16.8 141 121-262 93-237 (547)
8 KOG0443 Actin regulatory prote 99.9 1.3E-23 2.8E-28 231.0 12.2 143 269-420 513-656 (827)
9 PTZ00242 protein tyrosine phos 99.8 1.7E-19 3.6E-24 171.0 15.1 143 121-265 9-161 (166)
10 KOG1719 Dual specificity phosp 99.8 7.5E-19 1.6E-23 161.0 11.9 140 125-264 27-172 (183)
11 PTZ00393 protein tyrosine phos 99.8 4.7E-18 1E-22 168.0 15.0 123 139-264 107-231 (241)
12 KOG0443 Actin regulatory prote 99.7 2.3E-17 5.1E-22 182.1 8.1 143 273-421 139-294 (827)
13 COG2453 CDC14 Predicted protei 99.6 9.9E-15 2.1E-19 140.1 12.1 96 164-262 69-165 (180)
14 KOG1720 Protein tyrosine phosp 99.6 1.9E-14 4.2E-19 138.4 13.5 117 142-260 88-206 (225)
15 smart00262 GEL Gelsolin homolo 99.6 1.1E-14 2.3E-19 123.8 8.9 74 294-367 15-89 (90)
16 PF05706 CDKN3: Cyclin-depende 99.4 1.3E-12 2.8E-17 122.8 9.2 120 110-235 26-168 (168)
17 PF03162 Y_phosphatase2: Tyros 99.3 7.2E-12 1.6E-16 118.7 8.8 118 121-241 5-130 (164)
18 TIGR01244 conserved hypothetic 99.3 6.9E-11 1.5E-15 108.4 13.5 117 123-246 2-129 (135)
19 PF00626 Gelsolin: Gelsolin re 99.3 6.6E-12 1.4E-16 102.8 5.6 69 294-362 7-76 (76)
20 KOG0444 Cytoskeletal regulator 99.2 8.9E-12 1.9E-16 135.6 5.3 145 269-418 618-773 (1255)
21 KOG0444 Cytoskeletal regulator 99.2 6.1E-12 1.3E-16 136.8 1.3 141 270-421 1038-1188(1255)
22 KOG0445 Actin regulatory prote 99.1 3.3E-10 7.1E-15 123.5 9.5 151 270-449 642-797 (919)
23 KOG2836 Protein tyrosine phosp 99.0 7.2E-09 1.6E-13 93.7 12.7 115 141-258 34-152 (173)
24 smart00012 PTPc_DSPc Protein t 99.0 4.8E-09 1E-13 89.6 10.7 88 169-256 4-100 (105)
25 smart00404 PTPc_motif Protein 99.0 4.8E-09 1E-13 89.6 10.7 88 169-256 4-100 (105)
26 PF04273 DUF442: Putative phos 98.9 5.3E-09 1.2E-13 92.9 8.5 92 123-220 2-104 (110)
27 PLN02727 NAD kinase 98.7 8.7E-08 1.9E-12 109.7 11.1 98 129-229 262-369 (986)
28 COG5350 Predicted protein tyro 98.7 1.2E-07 2.6E-12 87.7 9.5 113 141-254 25-147 (172)
29 cd00047 PTPc Protein tyrosine 98.6 2.6E-07 5.5E-12 91.4 9.9 82 175-256 138-226 (231)
30 smart00194 PTPc Protein tyrosi 98.5 5E-07 1.1E-11 91.0 9.7 83 174-256 165-253 (258)
31 COG3453 Uncharacterized protei 98.4 4.4E-06 9.6E-11 74.5 11.7 113 122-241 2-125 (130)
32 PF13350 Y_phosphatase3: Tyros 98.3 1.8E-06 3.8E-11 81.5 8.8 110 126-236 16-158 (164)
33 KOG0445 Actin regulatory prote 98.2 1.4E-06 3.1E-11 95.7 6.4 100 269-374 220-326 (919)
34 KOG1572 Predicted protein tyro 98.2 7.7E-06 1.7E-10 80.9 10.9 118 121-241 58-187 (249)
35 PRK15375 pathogenicity island 98.2 6.5E-06 1.4E-10 89.5 10.4 89 174-262 430-529 (535)
36 PF04179 Init_tRNA_PT: Initiat 98.1 1.7E-05 3.7E-10 86.4 12.0 134 125-258 291-449 (451)
37 KOG2283 Clathrin coat dissocia 98.1 9.4E-06 2E-10 87.9 9.7 142 120-263 12-175 (434)
38 PF00102 Y_phosphatase: Protei 98.0 3.5E-05 7.7E-10 75.3 9.6 70 188-257 153-231 (235)
39 PF14566 PTPlike_phytase: Inos 97.8 4.4E-05 9.5E-10 71.4 6.3 59 165-225 90-148 (149)
40 PHA02742 protein tyrosine phos 97.8 0.00013 2.7E-09 75.9 10.4 52 201-252 229-285 (303)
41 PHA02747 protein tyrosine phos 97.7 0.00018 3.8E-09 75.2 10.3 54 202-255 230-288 (312)
42 PHA02746 protein tyrosine phos 97.7 0.00018 4E-09 75.4 10.2 54 202-255 248-306 (323)
43 PHA02740 protein tyrosine phos 97.6 0.00031 6.7E-09 73.0 10.5 51 201-251 221-276 (298)
44 PHA02738 hypothetical protein; 97.5 0.00045 9.9E-09 72.4 10.2 54 201-254 227-285 (320)
45 COG2365 Protein tyrosine/serin 97.5 0.00015 3.3E-09 73.4 5.8 121 129-249 54-184 (249)
46 KOG2386 mRNA capping enzyme, g 97.3 0.00041 8.9E-09 73.9 6.2 114 148-261 63-184 (393)
47 KOG0792 Protein tyrosine phosp 97.1 0.0014 3.1E-08 76.2 9.1 80 175-254 1036-1121(1144)
48 COG5599 PTP2 Protein tyrosine 97.0 0.0015 3.2E-08 66.0 6.9 79 174-256 192-287 (302)
49 KOG0790 Protein tyrosine phosp 96.7 0.0024 5.3E-08 68.3 5.5 109 141-250 373-508 (600)
50 KOG0789 Protein tyrosine phosp 96.5 0.0092 2E-07 63.9 8.8 55 200-254 298-358 (415)
51 KOG0791 Protein tyrosine phosp 95.6 0.044 9.6E-07 57.8 8.2 86 173-258 258-349 (374)
52 PF14671 DSPn: Dual specificit 94.1 0.21 4.5E-06 46.5 7.8 101 126-242 4-111 (141)
53 KOG1984 Vesicle coat complex C 92.8 0.35 7.6E-06 56.1 8.2 34 294-327 880-913 (1007)
54 KOG0793 Protein tyrosine phosp 92.5 0.28 6E-06 55.6 6.8 89 173-261 898-994 (1004)
55 KOG4471 Phosphatidylinositol 3 89.5 0.6 1.3E-05 52.2 5.8 39 187-225 360-399 (717)
56 KOG4228 Protein tyrosine phosp 89.1 0.46 1E-05 56.5 4.8 56 189-244 714-778 (1087)
57 COG5028 Vesicle coat complex C 86.3 1.3 2.8E-05 51.0 6.0 30 297-326 738-767 (861)
58 PTZ00395 Sec24-related protein 85.5 3.3 7.2E-05 50.7 9.1 33 295-327 1434-1466(1560)
59 KOG4228 Protein tyrosine phosp 82.2 1.8 3.9E-05 51.7 5.1 45 201-245 1018-1067(1087)
60 PF06602 Myotub-related: Myotu 74.0 7 0.00015 41.8 6.3 21 199-219 229-249 (353)
61 KOG1985 Vesicle coat complex C 72.8 3.7 8.1E-05 47.7 4.0 31 296-326 764-794 (887)
62 KOG1089 Myotubularin-related p 71.0 8.2 0.00018 43.6 6.0 35 191-225 333-369 (573)
63 cd01518 RHOD_YceA Member of th 68.9 18 0.00038 30.7 6.6 29 199-230 59-87 (101)
64 COG0607 PspE Rhodanese-related 64.5 14 0.0003 31.3 5.1 70 142-226 13-84 (110)
65 PLN02160 thiosulfate sulfurtra 58.0 16 0.00035 33.4 4.5 30 198-230 78-107 (136)
66 cd01533 4RHOD_Repeat_2 Member 55.2 25 0.00054 30.3 5.1 27 200-229 65-91 (109)
67 PLN00162 transport protein sec 48.9 37 0.00081 40.1 6.6 70 295-364 635-720 (761)
68 PF03861 ANTAR: ANTAR domain; 46.0 34 0.00074 26.4 4.0 26 216-241 15-40 (56)
69 PF03668 ATP_bind_2: P-loop AT 45.0 30 0.00064 36.0 4.5 18 203-220 244-261 (284)
70 PF00581 Rhodanese: Rhodanese- 44.9 76 0.0017 26.5 6.5 81 146-230 10-98 (113)
71 cd01448 TST_Repeat_1 Thiosulfa 44.6 34 0.00073 29.9 4.3 31 198-230 76-106 (122)
72 cd01528 RHOD_2 Member of the R 44.5 49 0.0011 27.9 5.2 28 200-230 57-84 (101)
73 smart00400 ZnF_CHCC zinc finge 43.0 26 0.00057 26.8 2.9 32 205-238 23-54 (55)
74 cd01523 RHOD_Lact_B Member of 42.6 31 0.00068 29.0 3.7 29 199-230 59-87 (100)
75 PRK01415 hypothetical protein; 41.6 65 0.0014 32.9 6.3 29 199-230 169-197 (247)
76 PRK10886 DnaA initiator-associ 39.3 67 0.0014 31.5 5.8 39 183-224 23-61 (196)
77 TIGR03865 PQQ_CXXCW PQQ-depend 39.1 36 0.00078 32.1 3.8 30 199-230 114-143 (162)
78 cd01520 RHOD_YbbB Member of th 38.1 58 0.0013 29.0 4.8 30 198-229 83-112 (128)
79 PRK05416 glmZ(sRNA)-inactivati 37.9 38 0.00082 35.2 4.0 36 185-220 222-264 (288)
80 cd01522 RHOD_1 Member of the R 35.2 56 0.0012 28.7 4.2 28 199-229 62-89 (117)
81 PRK00142 putative rhodanese-re 34.6 63 0.0014 34.0 5.1 28 200-230 170-197 (314)
82 PHA02540 61 DNA primase; Provi 34.4 65 0.0014 34.4 5.1 39 202-243 52-91 (337)
83 PRK05320 rhodanese superfamily 32.7 65 0.0014 32.9 4.7 27 200-229 174-200 (257)
84 COG2927 HolC DNA polymerase II 32.3 46 0.001 31.2 3.2 22 188-209 16-37 (144)
85 cd01534 4RHOD_Repeat_3 Member 31.7 61 0.0013 27.0 3.7 27 200-229 55-81 (95)
86 PRK05728 DNA polymerase III su 30.7 64 0.0014 29.9 3.9 25 186-210 14-38 (142)
87 PF01807 zf-CHC2: CHC2 zinc fi 28.8 63 0.0014 27.9 3.3 37 205-243 54-90 (97)
88 cd01529 4RHOD_Repeats Member o 28.3 67 0.0015 26.8 3.4 28 199-229 54-81 (96)
89 PRK13938 phosphoheptose isomer 28.3 1.4E+02 0.003 29.3 5.9 41 181-224 25-65 (196)
90 cd01447 Polysulfide_ST Polysul 28.0 65 0.0014 26.8 3.3 29 198-229 58-86 (103)
91 KOG0235 Phosphoglycerate mutas 27.9 2.3E+02 0.0051 28.3 7.5 52 179-236 130-185 (214)
92 PRK14116 gpmA phosphoglyceromu 26.5 1.4E+02 0.0031 29.5 5.9 50 179-234 148-201 (228)
93 PF04364 DNA_pol3_chi: DNA pol 26.3 71 0.0015 29.3 3.4 23 187-209 15-37 (137)
94 cd01532 4RHOD_Repeat_1 Member 25.8 95 0.0021 25.8 3.8 29 200-229 49-77 (92)
95 PRK06646 DNA polymerase III su 25.4 89 0.0019 29.5 3.9 25 186-210 14-38 (154)
96 cd01519 RHOD_HSP67B2 Member of 25.2 93 0.002 26.1 3.7 29 199-230 64-92 (106)
97 cd01525 RHOD_Kc Member of the 25.0 95 0.0021 26.1 3.8 26 201-229 65-90 (105)
98 cd01526 RHOD_ThiF Member of th 24.6 87 0.0019 27.5 3.5 28 199-229 70-97 (122)
99 TIGR00853 pts-lac PTS system, 24.5 63 0.0014 27.8 2.5 13 201-213 3-15 (95)
100 COG4738 Predicted transcriptio 24.0 55 0.0012 29.6 2.0 32 210-242 23-54 (124)
101 COG0279 GmhA Phosphoheptose is 23.9 1.1E+02 0.0024 29.6 4.1 32 183-217 23-54 (176)
102 PF10302 DUF2407: DUF2407 ubiq 23.4 41 0.00089 29.3 1.1 11 201-211 85-95 (97)
103 cd05567 PTS_IIB_mannitol PTS_I 23.3 80 0.0017 26.3 2.9 14 202-215 1-14 (87)
104 TIGR02981 phageshock_pspE phag 23.1 1.7E+02 0.0036 25.3 4.9 27 200-229 57-83 (101)
105 PRK14118 gpmA phosphoglyceromu 23.0 1.7E+02 0.0037 28.9 5.7 50 179-234 147-200 (227)
106 COG1660 Predicted P-loop-conta 23.0 1.1E+02 0.0025 31.6 4.3 21 199-219 238-261 (286)
107 PF02673 BacA: Bacitracin resi 22.8 76 0.0017 32.5 3.1 26 210-237 160-185 (259)
108 PRK10287 thiosulfate:cyanide s 22.4 1.7E+02 0.0037 25.5 4.9 18 200-218 59-76 (104)
109 PRK05772 translation initiatio 21.9 1.4E+02 0.003 32.3 4.9 14 198-211 164-177 (363)
110 PRK12554 undecaprenyl pyrophos 21.8 77 0.0017 32.9 2.9 25 211-237 167-191 (276)
111 TIGR00753 undec_PP_bacA undeca 21.1 82 0.0018 32.3 2.9 25 211-237 161-185 (255)
112 cd01443 Cdc25_Acr2p Cdc25 enzy 20.9 2.1E+02 0.0045 24.7 5.1 19 200-218 65-83 (113)
113 cd01444 GlpE_ST GlpE sulfurtra 20.6 1.7E+02 0.0036 24.0 4.3 29 198-229 53-81 (96)
No 1
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.98 E-value=3.7e-32 Score=251.13 Aligned_cols=144 Identities=32% Similarity=0.513 Sum_probs=136.3
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhc
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~ 200 (541)
..+++|++.|||++-.+|.+..+|+++|||+|||.+.+. |+..-.++.|..+|+.|.+...+..+|+.+.|.|+....+
T Consensus 15 ~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~~ 93 (198)
T KOG1718|consen 15 GGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNTSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIMR 93 (198)
T ss_pred cchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCC-CCccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHhc
Confidence 468999999999988888999999999999999987665 5566789999999999999999999999999999999999
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhccC
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~~ 265 (541)
||++||||.+|+|||+++|+||||++.+|++.+|+.+||++||+|.||.|||+||..||+++++.
T Consensus 94 gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~ 158 (198)
T KOG1718|consen 94 GGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGN 158 (198)
T ss_pred CCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=2.1e-30 Score=236.15 Aligned_cols=138 Identities=38% Similarity=0.626 Sum_probs=129.1
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCC
Q 009161 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGG 202 (541)
Q Consensus 123 ~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg 202 (541)
+++|.|+||+|+.+++.+.+.|+++||++||||+.+.. .....++.|+++|+.|....++...+.++++||+.++++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~-~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVP-NLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCC-CCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999986543 34467899999999998788888999999999999999999
Q ss_pred eEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhh
Q 009161 203 RVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (541)
Q Consensus 203 ~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~ 261 (541)
+|||||.+|+|||+++++||||+..||++++|+++|+.+||.+.||.+|+.||..||++
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999874
No 3
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.97 E-value=8.6e-30 Score=260.64 Aligned_cols=146 Identities=42% Similarity=0.674 Sum_probs=135.9
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCC-ccCC-CcEEEeeeCCCCCCCchHHHHHHHHHHHHHHH
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE-YFKG-DLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~-~~~~-~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~ 198 (541)
..+.+|.|+||+|+..++.+.+.|+++||++|||+....... +... ++.|+++++.|.+..+|..+|+++++||+.++
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999987654332 2333 89999999999999999999999999999999
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhccCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAMP 266 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~~~ 266 (541)
.+|++|||||.+|+|||+|++|||||++++|++++|+++|+.+||++.||.+|+.||++||+.+....
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~~ 220 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKKS 220 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999987754
No 4
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.9e-29 Score=247.47 Aligned_cols=143 Identities=29% Similarity=0.559 Sum_probs=133.6
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccC--CCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHH
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFK--GDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~~~--~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~ 198 (541)
..+.+|+|+||||+..++.+.+.|++.||++|||++... |+.|+ +++.|+.||+.|.-.+++.++|++|+.||++++
T Consensus 170 ~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnl-pn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeAr 248 (343)
T KOG1717|consen 170 SFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL-PNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEAR 248 (343)
T ss_pred CcchhhccchhcccccccccHHHHHhcCceEEEecCCCC-cchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhh
Confidence 346799999999999999999999999999999987654 55554 478999999999999999999999999999999
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhcc
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~ 264 (541)
.++..|||||-+|||||+||++||||.+..+++++||++|+.++..|.||.+||.||.+||+.+-.
T Consensus 249 sk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl 314 (343)
T KOG1717|consen 249 SKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGL 314 (343)
T ss_pred ccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999998743
No 5
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=5.5e-28 Score=219.32 Aligned_cols=138 Identities=42% Similarity=0.676 Sum_probs=128.2
Q ss_pred ccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC-CccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhc
Q 009161 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ 200 (541)
Q Consensus 122 ~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p-~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~ 200 (541)
++++|.|+||+|+.+++.+.+.|+++||++||||+..... .....++.|+++|+.|.+..++...+..+++||+...++
T Consensus 1 ~~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~ 80 (139)
T cd00127 1 PLSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREK 80 (139)
T ss_pred CcCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999999999999865443 344578999999999998888888899999999999999
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHH
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQ 259 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e 259 (541)
+++|||||.+|+|||+++++||||...++++++|+++||++||.+.||.+|+.||.+||
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999996
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=2.3e-28 Score=220.91 Aligned_cols=131 Identities=37% Similarity=0.584 Sum_probs=122.0
Q ss_pred eEECChhhhcCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEE
Q 009161 130 IYLGSDAVAKNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVH 207 (541)
Q Consensus 130 LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~--~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVH 207 (541)
||||+.+.+. ...|+++||++||||+.+.... ....++.|+++|+.|....++...++.+++||+++..+|++||||
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVH 79 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVH 79 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEE
Confidence 7999999999 9999999999999998754331 345689999999999888888899999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhh
Q 009161 208 CCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (541)
Q Consensus 208 C~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~ 261 (541)
|.+|+|||+++++||||++.+|++++|+++|+.+||.+.||.+|+.||.+||++
T Consensus 80 C~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 80 CKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp ESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred eCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999999999999975
No 7
>PRK12361 hypothetical protein; Provisional
Probab=99.90 E-value=1.4e-23 Score=232.58 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=126.4
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCC---CccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHH
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP---EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDV 197 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p---~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~ 197 (541)
+.+++|.|+||||+.+.+.+.+.|+++||++||||+.+... .....++.|+++|+.|...+.+ ++|+++++||+++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~-~~l~~a~~~i~~~ 171 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTL-AQLNQAINWIHRQ 171 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcH-HHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999865332 2345678999999999877654 6799999999999
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHh-cCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhh
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRV 262 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~-~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l 262 (541)
+++|++|||||.+|+|||+++++||||.+ .++++++|+++||++||.+.||.+++++|.+|.+..
T Consensus 172 ~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~ 237 (547)
T PRK12361 172 VRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQG 237 (547)
T ss_pred HHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Confidence 99999999999999999999999999977 589999999999999999999999999999987654
No 8
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.90 E-value=1.3e-23 Score=230.99 Aligned_cols=143 Identities=24% Similarity=0.354 Sum_probs=124.9
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHHHHhhcCCc
Q 009161 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQGQ 348 (541)
Q Consensus 269 pss~~RLYRV~g~S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~~~~~ 348 (541)
+....+||||+|..+.+.+++ ||+..++||||+|||||++++.+|+|+|++|+. .++++|..+...+. .++
T Consensus 513 ~~~~t~LFqV~Gt~~~n~kAv----eV~~~A~SLNSsd~fvL~t~s~~ylW~G~gss~----~e~e~A~~v~~~l~-~~~ 583 (827)
T KOG0443|consen 513 PAPSTRLFQVQGTGPSNTKAV----EVPAVASSLNSSDCFVLKTGSSVYLWCGKGSSG----DEREMAKRVLDLLK-RCQ 583 (827)
T ss_pred CCCceEEEEEeccCcccceeE----eeccccccccccceEEEecCCeEEEEeCCCCCH----HHHHHHHHHHHHHh-cCC
Confidence 445689999999999999988 999999999999999999999999999999999 77888877777665 567
Q ss_pred eEEecCCCChhHHHHHcCCCccCCCCC-cccccCCCcceEEeecCCccEEEeceecccCCCCChhhHHhhhcC
Q 009161 349 ITSIKEGEEPLEFWDALVRGQFFADGC-NKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDG 420 (541)
Q Consensus 349 i~vv~EG~E~~eFW~~LGgk~~~~~~~-~~~~~~~~~rLf~~Sd~sG~~~~e~~~~~~q~DLd~~~~~~a~~g 420 (541)
.+.+.||+||++||++|||+.+|+... ...+....||||.||+.+|.++.+++.+|+|+||+.++||-.++|
T Consensus 584 ~~~v~EG~Ep~~FWe~LGGk~~Y~~sk~~~~~~~~~PrLF~Cs~~~g~f~~~EI~~F~QdDL~tdDi~lLDt~ 656 (827)
T KOG0443|consen 584 STAVKEGSEPDEFWELLGGKAEYPSSKRLEEKPERDPRLFSCSNKTGSFVVEEIYNFTQDDLMTDDIMLLDTW 656 (827)
T ss_pred hhhhhcCCCchhhHHHcCCCCCCCcCccccccCCCCCcEEEEEecCCcEEEEEecCcchhhccccceEEEecC
Confidence 778999999999999999999999874 444467788999999999998887778999999999987644443
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=1.7e-19 Score=171.00 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=114.1
Q ss_pred cccccccCCeEECChhhh----cCHHHHHHCCCcEEEEcccCCCC-Ccc-CCCcEEEeeeCCCCCCCchHHHHHHHHHHH
Q 009161 121 KECSRIADHIYLGSDAVA----KNRGILRQNGITHVLNCVGFVCP-EYF-KGDLVYKTLWLQDSPSEDITSILYDVFDYF 194 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A----~d~~~L~~~gIt~VVnl~~~~~p-~~~-~~~i~yl~ipl~D~~~~~l~~~l~~av~fI 194 (541)
..++-|..++..-..|.. .+.+.|+++||++||+++....+ ..+ ..++.++++|+.|...+.. ..+.+.++++
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~-~~i~~~~~~i 87 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPK-AVIDNWLRLL 87 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCH-HHHHHHHHHH
Confidence 445666676666655544 34589999999999998754322 122 3589999999988765543 4567778888
Q ss_pred HHHHhc----CCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhccC
Q 009161 195 EDVREQ----GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHAM 265 (541)
Q Consensus 195 ~~~~~~----gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~~ 265 (541)
++.+.. |++|+|||.+|+|||+++++||||...++++++|+++||.+||.+ .+..++.+|.+|++.++..
T Consensus 88 ~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~-i~~~Q~~~l~~~~~~~~~~ 161 (166)
T PTZ00242 88 DQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGA-INQTQLQFLKKYKPRKKAA 161 (166)
T ss_pred HHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCC-chHHHHHHHHHHHHHhccC
Confidence 877654 999999999999999999999999998999999999999999986 5889999999999877654
No 10
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.79 E-value=7.5e-19 Score=160.99 Aligned_cols=140 Identities=18% Similarity=0.204 Sum_probs=120.8
Q ss_pred cccCCeEECChhh-hcCHHHHHHCCCcEEEEcccCCCC-----CccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHH
Q 009161 125 RIADHIYLGSDAV-AKNRGILRQNGITHVLNCVGFVCP-----EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (541)
Q Consensus 125 ~I~p~LyLGs~~~-A~d~~~L~~~gIt~VVnl~~~~~p-----~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~ 198 (541)
+|.+++.+|-.+- .++.+.+++.|+..||.|..+..- .+-..+++++.+|..|.-..+-...+.++++||++..
T Consensus 27 ~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~a 106 (183)
T KOG1719|consen 27 RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNA 106 (183)
T ss_pred eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhcc
Confidence 6777778877554 367789999999999998753221 1223589999999999987766677999999999999
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhcc
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~ 264 (541)
..|+.|+|||.+|++||+|+|+||||...+|+.++|+++||++||.|-..++++..|.+|-+..-.
T Consensus 107 sLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~ef~~~~~~ 172 (183)
T KOG1719|consen 107 SLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKEFYKQIVA 172 (183)
T ss_pred ccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999876543
No 11
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.77 E-value=4.7e-18 Score=167.97 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=106.1
Q ss_pred cCHHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhH
Q 009161 139 KNRGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRST 216 (541)
Q Consensus 139 ~d~~~L~~~gIt~VVnl~~~~~p~--~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSa 216 (541)
..++.|++.||++||++++...+. ....++.++++|+.|...+.. ..+.+.+++|++.++.|++|+|||.+|+|||+
T Consensus 107 ~yl~eLk~~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~-~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTG 185 (241)
T PTZ00393 107 LYIKEMKNYNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTV-DIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAP 185 (241)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 455889999999999987644321 234589999999999877664 56788899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhhhcc
Q 009161 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKRVHA 264 (541)
Q Consensus 217 tvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~l~~ 264 (541)
++++||||. .|+++++|+++||.+||.+ +|..++..|.+|+++..+
T Consensus 186 tl~AayLI~-~GmspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~k 231 (241)
T PTZ00393 186 VLASIVLIE-FGMDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKKK 231 (241)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccc
Confidence 999999997 6999999999999999988 689999999999987643
No 12
>KOG0443 consensus Actin regulatory proteins (gelsolin/villin family) [Cytoskeleton]
Probab=99.69 E-value=2.3e-17 Score=182.11 Aligned_cols=143 Identities=18% Similarity=0.198 Sum_probs=116.8
Q ss_pred ceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCceEE
Q 009161 273 LRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITS 351 (541)
Q Consensus 273 ~RLYRV~g~S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~-~~~~i~v 351 (541)
.||||++| .++|+..+|+..++|||++||||||+++.||||+|.+++..||.+|++.|++|.+.++ ++++|.+
T Consensus 139 ~rL~~~KG------kr~vr~~eV~~~~sS~N~gDvFILD~g~~i~qw~G~~Ss~~ER~KAl~~~~~IrD~e~~Gr~~V~v 212 (827)
T KOG0443|consen 139 VRLFHCKG------KRNVRVKEVPFSWSSLNHGDVFILDTGSKIYQWNGPNSSIQERAKALEVVQYIRDNERDGRCEVAV 212 (827)
T ss_pred eEEEEEcc------ceeEEEEEEEeehhhcCCCcEEEEEcCCceEEEcCCcccHHHHHHHHHHHHHhhccCCCCceeEEE
Confidence 49999999 4567788999999999999999999999999999999999999999999999999988 7788989
Q ss_pred ecCCC-----ChhHHHHHcCCCcc-CCCC----CcccccCCCcceEEeecCCccEEEece--ecccCCCCChhhHHhhhc
Q 009161 352 IKEGE-----EPLEFWDALVRGQF-FADG----CNKEEVKNEQVSFSGSNKIATLMQDGA--GEIDEYDLDFELFHKALD 419 (541)
Q Consensus 352 v~EG~-----E~~eFW~~LGgk~~-~~~~----~~~~~~~~~~rLf~~Sd~sG~~~~e~~--~~~~q~DLd~~~~~~a~~ 419 (541)
|++|+ +..+||..+||..+ .+.. .........++||+|||++|...+..+ +++.|+.||.+..+..+.
T Consensus 213 vdd~~~~~d~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~s~~~kLYkVsd~~g~l~v~~va~~~l~qdlLd~~dCYILD~ 292 (827)
T KOG0443|consen 213 VDDGKEAADSDLGEFWGFVLGFAPALPKKSPDDDDEQANSAAAKLYKVSDASGGLKVPVVADGPLTKDLLDTEDCYILDC 292 (827)
T ss_pred ecCcccccCchHHHHHHhhcCcCccCCCCCcchhhhhhhccccEEEEEeccCCCccccccccchhhHHhhccCCeEEEec
Confidence 99876 35799999998655 3322 111125668999999999999444333 459999999987766555
Q ss_pred CC
Q 009161 420 GG 421 (541)
Q Consensus 420 gg 421 (541)
||
T Consensus 293 g~ 294 (827)
T KOG0443|consen 293 GG 294 (827)
T ss_pred CC
Confidence 54
No 13
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.58 E-value=9.9e-15 Score=140.09 Aligned_cols=96 Identities=22% Similarity=0.309 Sum_probs=81.3
Q ss_pred cCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHHHHHHHHc
Q 009161 164 FKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAAR 242 (541)
Q Consensus 164 ~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~-g~Sl~eAl~~Vr~~R 242 (541)
...++.++++|+.|...+++ ..+.+++++|++++++|++|+|||.+|+|||+||++||||.++ .+..++|+.+++.+|
T Consensus 69 ~~~~~~~~~~~~~D~~~p~~-~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 69 ENDGIQVLHLPILDGTVPDL-EDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred ccCCceeeeeeecCCCCCcH-HHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 34678899999999999988 6799999999999999999999999999999999999999995 556667777777777
Q ss_pred CccccCcchHHHHHHHHhhh
Q 009161 243 GVTNPNMGFACQLLLCQKRV 262 (541)
Q Consensus 243 p~i~PN~gF~~QL~~~e~~l 262 (541)
+. ++....+++..++...
T Consensus 148 ~~--~v~~~~q~~~~~e~~~ 165 (180)
T COG2453 148 PG--AVVTEIQHLFELEQEL 165 (180)
T ss_pred Cc--ccccHHHHHHHHHHHH
Confidence 76 6777777777776554
No 14
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.58 E-value=1.9e-14 Score=138.37 Aligned_cols=117 Identities=18% Similarity=0.338 Sum_probs=97.6
Q ss_pred HHHHHCCCcEEEEcccCCCC--CccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHH
Q 009161 142 GILRQNGITHVLNCVGFVCP--EYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (541)
Q Consensus 142 ~~L~~~gIt~VVnl~~~~~p--~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvv 219 (541)
..++.++++.||.+.+...+ .+...++.++++++.|...+++ ..+.+.++.++.+.+ |++|.|||.+|.|||++|+
T Consensus 88 ~~~~~~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~-~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~li 165 (225)
T KOG1720|consen 88 QYFKNNNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTD-AIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLI 165 (225)
T ss_pred HHhhhcccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCH-HHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHH
Confidence 56778999999998764422 2345689999999999888876 446777777777887 9999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHh
Q 009161 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQK 260 (541)
Q Consensus 220 iAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~ 260 (541)
+||||+.+|++..||++.||..||..-..+.+...|.++-.
T Consensus 166 Ac~lmy~~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 166 ACYLMYEYGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HHHHHHHhCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 99999999999999999999999988777777777766544
No 15
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.56 E-value=1.1e-14 Score=123.82 Aligned_cols=74 Identities=27% Similarity=0.393 Sum_probs=67.5
Q ss_pred cCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHHHHhh-cCCceEEecCCCChhHHHHHcCC
Q 009161 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQGQITSIKEGEEPLEFWDALVR 367 (541)
Q Consensus 294 eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~-~~~~i~vv~EG~E~~eFW~~LGg 367 (541)
+++...++|+++||||||++..||+|+|++|+..++..|+..|..+.+..+ +..++.+|+||.||.+||..|||
T Consensus 15 ~~~~~~~~L~s~d~fild~~~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 15 EVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred EcCCCHHHCCCCCEEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 568889999999999999999999999999999999988888888877665 56789999999999999999997
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.38 E-value=1.3e-12 Score=122.80 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=72.6
Q ss_pred ccccccccccccccccc--cCCeEECChhh----------hcCHHHHHHCCCcEEEEcccCC------CCC----ccCCC
Q 009161 110 EFKKDKLAFFDKECSRI--ADHIYLGSDAV----------AKNRGILRQNGITHVLNCVGFV------CPE----YFKGD 167 (541)
Q Consensus 110 ~~~~d~~~~~~~~~s~I--~p~LyLGs~~~----------A~d~~~L~~~gIt~VVnl~~~~------~p~----~~~~~ 167 (541)
.++.+|+. .+.+ ...|.+...+- ..|++.|+..|++.||.++... .+. +-..+
T Consensus 26 P~~i~~l~-----~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~G 100 (168)
T PF05706_consen 26 PIQIDWLP-----LSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARG 100 (168)
T ss_dssp ----EEEE------GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT
T ss_pred ceeeeeec-----ccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcC
Confidence 44566664 3444 34566665544 4567899999999999987421 111 12358
Q ss_pred cEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHH
Q 009161 168 LVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAF 235 (541)
Q Consensus 168 i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~-g~Sl~eAl 235 (541)
+.++|+||.|...+++.. +.++++.|...+++|++|+|||.+|+|||++|++++|+.-. .++.++|+
T Consensus 101 i~~~h~PI~D~~aPd~~~-~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 101 IAWHHLPIPDGSAPDFAA-AWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -EEEE----TTS---HHH-HHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CEEEecCccCCCCCCHHH-HHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 999999999999988754 44678888899999999999999999999999999988754 58999886
No 17
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.30 E-value=7.2e-12 Score=118.73 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=76.9
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCc-----cCCCcEEEeeeCCCCCCC--c-hHHHHHHHHH
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY-----FKGDLVYKTLWLQDSPSE--D-ITSILYDVFD 192 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~-----~~~~i~yl~ipl~D~~~~--~-l~~~l~~av~ 192 (541)
.....|.++||-|+.+.+.+..+|+++||+.||+|.++..+.. -..++.++++++...... . ....+.++++
T Consensus 5 ~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL~ 84 (164)
T PF03162_consen 5 LNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEALE 84 (164)
T ss_dssp TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHHH
T ss_pred ccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHHH
Confidence 3457899999999999999999999999999999987643322 146899999999755431 1 1234555555
Q ss_pred HHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 009161 193 YFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (541)
Q Consensus 193 fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~ 241 (541)
.|.+. .+.+|||||..|..|+++|+++|- +.+||++..|++..+.-
T Consensus 85 ~ild~--~n~PvLiHC~~G~~rTG~vvg~lR-k~Q~W~~~~i~~Ey~~f 130 (164)
T PF03162_consen 85 IILDP--RNYPVLIHCNHGKDRTGLVVGCLR-KLQGWSLSSIFDEYRRF 130 (164)
T ss_dssp HHH-G--GG-SEEEE-SSSSSHHHHHHHHHH-HHTTB-HHHHHHHHHHH
T ss_pred HHhCC--CCCCEEEEeCCCCcchhhHHHHHH-HHcCCCHHHHHHHHHHh
Confidence 55433 457999999999999999999998 67899999999998863
No 18
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.27 E-value=6.9e-11 Score=108.44 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=85.7
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEeeeCCCCCCCchHHHHHHHH
Q 009161 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (541)
Q Consensus 123 ~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~----p~~-------~~~~i~yl~ipl~D~~~~~l~~~l~~av 191 (541)
+.+|.+.+|+++.....+.+.|+++||+.|||+..... |.. ...++.|+++|+......+ .......
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~~~~--~~v~~f~ 79 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGDITP--DDVETFR 79 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCCCCH--HHHHHHH
Confidence 46899999999999999999999999999999975321 211 1258999999987533211 1122222
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccc
Q 009161 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTN 246 (541)
Q Consensus 192 ~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~ 246 (541)
++++ ...++||+||++|. |++++.+.++.. .|++.+++++..+..--.+.
T Consensus 80 ~~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~-~g~~~~~i~~~~~~~G~~~~ 129 (135)
T TIGR01244 80 AAIG---AAEGPVLAYCRSGT-RSSLLWGFRQAA-EGVPVEEIVRRAQAAGYDLS 129 (135)
T ss_pred HHHH---hCCCCEEEEcCCCh-HHHHHHHHHHHH-cCCCHHHHHHHHHHcCCCcc
Confidence 2232 34689999999999 998877666654 79999999999988765443
No 19
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.26 E-value=6.6e-12 Score=102.75 Aligned_cols=69 Identities=22% Similarity=0.383 Sum_probs=61.0
Q ss_pred cCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHH-HHhhcCCceEEecCCCChhHHH
Q 009161 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVI-RYEKAQGQITSIKEGEEPLEFW 362 (541)
Q Consensus 294 eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~-~~~~~~~~i~vv~EG~E~~eFW 362 (541)
.+..+..+|+++||||||++..||+|+|++|+..++..+...|.++. ....+.+++.++.||+|+..||
T Consensus 7 ~~~~s~~~L~s~~~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 7 QVPLSQSSLNSDDCYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp EESSSGGGEETTSEEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred cCCCCHHHcCCCCEEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 56888999999999999999999999999999988888888888887 4334667788889999999998
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=8.9e-12 Score=135.56 Aligned_cols=145 Identities=23% Similarity=0.318 Sum_probs=109.8
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHHHHhh-cCC
Q 009161 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEK-AQG 347 (541)
Q Consensus 269 pss~~RLYRV~g~S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~-~~~ 347 (541)
+.-++||||+-+...- .++ .-|+++..|||.+.||+||.|..||+|.|.++.-.-..+|+-.|..|.+.++ +++
T Consensus 618 ~~h~TRlYrv~~~g~~--i~l---EPVpl~~tSLDPRf~FlLD~G~~IyiW~G~~s~~t~~~KARLfAEkinK~eRKgK~ 692 (1255)
T KOG0444|consen 618 PAHLTRLYRVGVNGTA--IEL---EPVPLSVTSLDPRFCFLLDAGETIYIWSGYKSRITVSNKARLFAEKINKRERKGKS 692 (1255)
T ss_pred hHHhhhhheeccccce--eEe---eccCccccccCcceEEEEeCCceEEEEeccchhcccchHHHHHHHHhhhhhccCce
Confidence 3457899998764211 111 1367888999999999999999999999999977777799999999998887 888
Q ss_pred ceEEecCCCChhHHHHHcCCCccCCCC----Ccccc-cCCCcceEEeecCCccEEE----ece-ecccCCCCChhhHHhh
Q 009161 348 QITSIKEGEEPLEFWDALVRGQFFADG----CNKEE-VKNEQVSFSGSNKIATLMQ----DGA-GEIDEYDLDFELFHKA 417 (541)
Q Consensus 348 ~i~vv~EG~E~~eFW~~LGgk~~~~~~----~~~~~-~~~~~rLf~~Sd~sG~~~~----e~~-~~~~q~DLd~~~~~~a 417 (541)
+|+.+.+|+|+.+||++|||.+..+.. ..++. .+..||||++.-.-|.+.. ..+ +...|+-|+...++-.
T Consensus 693 EI~l~rQg~e~pEFWqaLgg~p~e~~~~ikeHVPEdf~p~qpkLYkV~lGmGyLELPQvel~P~~~l~q~lL~sk~VyiL 772 (1255)
T KOG0444|consen 693 EIELCRQGREPPEFWQALGGNPDEPQGAIKEHVPEDFVPEQPKLYKVNLGMGYLELPQVELLPKGILKQDLLGSKGVYIL 772 (1255)
T ss_pred eeehhhhcCCCHHHHHHhCCCCcccccchhhcCCcccCCCCcceEEEccccceeecchhhhchhhHHHHHhhcCCeEEEE
Confidence 999999999999999999997765433 22222 5668999999888888321 212 4566666666655544
Q ss_pred h
Q 009161 418 L 418 (541)
Q Consensus 418 ~ 418 (541)
+
T Consensus 773 D 773 (1255)
T KOG0444|consen 773 D 773 (1255)
T ss_pred e
Confidence 3
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=6.1e-12 Score=136.80 Aligned_cols=141 Identities=18% Similarity=0.304 Sum_probs=111.5
Q ss_pred CccceeeeecCC-CCCCCccccccccCCCcccccCCCCeEEEeeC-------CeeEEEecCCCChhhhHHHHHHHHHHHH
Q 009161 270 NSMLRIYRIAPH-SSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVP-------SAIYVWIGKNCSVMMSNRAREAANQVIR 341 (541)
Q Consensus 270 ss~~RLYRV~g~-S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~-------~~IyvW~Gk~ss~~e~~~e~~~A~~i~~ 341 (541)
.+...+|+++.+ +....+.+ ++.+.+..|||..||||..| ..+|+|.|+.|+. .|+..|..+..
T Consensus 1038 ~~~pelfq~R~NGsalctR~I----Qin~da~~LnS~FC~iL~vPFe~~~~~gvvy~w~gk~sdp----~e~~~a~d~~~ 1109 (1255)
T KOG0444|consen 1038 GKWPELFQMRANGSALCTRTI----QINCDANQLNSAFCHMLRIPFEEDGHRGVVYVWMGKDSDP----REHEFASDLVV 1109 (1255)
T ss_pred CCCchheeeecCCccceeeeE----EecCcHHHHhhhhHheEecccccCCCceEEEEEeccCCCh----HHHHHHHHhcC
Confidence 345668888754 34555666 88999999999999999875 4589999999999 77888766543
Q ss_pred Hhh-cCCceEEecCCCChhHHHHHcCCCccCCCCCcccccCCCcceEEeecCCcc-EEEeceecccCCCCChhhHHhhhc
Q 009161 342 YEK-AQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIAT-LMQDGAGEIDEYDLDFELFHKALD 419 (541)
Q Consensus 342 ~~~-~~~~i~vv~EG~E~~eFW~~LGgk~~~~~~~~~~~~~~~~rLf~~Sd~sG~-~~~e~~~~~~q~DLd~~~~~~a~~ 419 (541)
... ....+++++||+|+.+||..+||+++|+.+... ....|||+|++.+|. -+.+....|+|+||++++++-..+
T Consensus 1110 ~~~d~~~~~~~~~egee~e~fw~~~g~~k~ye~d~~~---~khtrlfrc~nekgyfa~sek~~DfcqDDl~dddim~ldn 1186 (1255)
T KOG0444|consen 1110 RDDDNDFRIVEVQEGEENEEFWKVLGGKKKYETDSSF---VKHTRLFRCTNEKGYFAISEKTVDFCQDDLDDDDIMILDN 1186 (1255)
T ss_pred ccccchhhhhccCCccchHHHhcccCCCCccchhHHH---HHHHHHHhccchhhhhhHhHhhhhhhhccchhhhhhhhcc
Confidence 322 344577899999999999999999999877432 336799999999999 556677899999999999987666
Q ss_pred CC
Q 009161 420 GG 421 (541)
Q Consensus 420 gg 421 (541)
|-
T Consensus 1187 g~ 1188 (1255)
T KOG0444|consen 1187 GD 1188 (1255)
T ss_pred cc
Confidence 54
No 22
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=99.08 E-value=3.3e-10 Score=123.55 Aligned_cols=151 Identities=23% Similarity=0.297 Sum_probs=117.7
Q ss_pred CccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEeeC--CeeEEEecCCCChhhhHHHHHHHHHHHHHhh---
Q 009161 270 NSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVP--SAIYVWIGKNCSVMMSNRAREAANQVIRYEK--- 344 (541)
Q Consensus 270 ss~~RLYRV~g~S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~--~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~--- 344 (541)
....|+|+|.|+.+...... +|.+..++|.|+..+|+..+ ..+|+|+|.++-...+..+..+|+.+.+.-.
T Consensus 642 ~~~erlY~v~G~vs~Et~l~----Ev~c~~S~LRSr~smv~~~~~~~~~~~whg~k~~~ht~~v~v~aa~~~~~q~pgs~ 717 (919)
T KOG0445|consen 642 EEEERLYCVRGEVSVETNLL----EVACHCSSLRSRTSMVVLNVNKALIYLWHGCKAQAHTKEVGVTAANKIKEQCPGSS 717 (919)
T ss_pred hchhheeeEecccccchhhh----HhhhccccccccceEEEEeccccceEEEecccCCcchhhHhHHHHHHHHHhCCCcc
Confidence 34567999999876665544 88999999999999999887 4599999999998778888888888776543
Q ss_pred cCCceEEecCCCChhHHHHHcCCCccCCCCCcccccCCCcceEEeecCCccEEEeceecccCCCCChhhHHhhhcCCCCC
Q 009161 345 AQGQITSIKEGEEPLEFWDALVRGQFFADGCNKEEVKNEQVSFSGSNKIATLMQDGAGEIDEYDLDFELFHKALDGGVVP 424 (541)
Q Consensus 345 ~~~~i~vv~EG~E~~eFW~~LGgk~~~~~~~~~~~~~~~~rLf~~Sd~sG~~~~e~~~~~~q~DLd~~~~~~a~~gg~~p 424 (541)
+...+++|+||.++..||++||.|. ..+.+|||..|...-. +..+ .....++|.|..+|.+
T Consensus 718 ~~~~~~Eveegs~~~~~~~alGrkd----------f~~~~RlF~~sS~qa~---els~---p~rc~~pFsQ~~Ly~a--- 778 (919)
T KOG0445|consen 718 SKVTIHEVEEGSEPLGFWDALGRKD----------FNFAPRLFILSSSQAT---ELSY---PARCPMPFSQEDLYSA--- 778 (919)
T ss_pred ccceeEeecCCCCchhhhhhccccc----------ccccceeeeccchhhh---hccC---cccCCCcccHHHHhhh---
Confidence 4456889999999999999999875 4568999999866522 1111 1112277777777777
Q ss_pred CeeecCCCCceeecCcccchhhhhh
Q 009161 425 PFSVSNAGSETCVPARESGWCRLRR 449 (541)
Q Consensus 425 ~~~~~~~~~e~~l~~~~~~~~~~~~ 449 (541)
|+.|+|+|+||=- |..-|+
T Consensus 779 --fLvD~gdelwLW~----w~s~r~ 797 (919)
T KOG0445|consen 779 --FLVDNGDELWLWQ----WASDRK 797 (919)
T ss_pred --eeeccCCeeEeeh----hhhHHH
Confidence 8999999999965 888877
No 23
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.98 E-value=7.2e-09 Score=93.71 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=81.3
Q ss_pred HHHHHHCCCcEEEEcccCCCCC--ccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHH--HHhcCCeEEEEcCCCCchhH
Q 009161 141 RGILRQNGITHVLNCVGFVCPE--YFKGDLVYKTLWLQDSPSEDITSILYDVFDYFED--VREQGGRVFVHCCQGVSRST 216 (541)
Q Consensus 141 ~~~L~~~gIt~VVnl~~~~~p~--~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~--~~~~gg~VLVHC~aGvsRSa 216 (541)
.+.|+++|++.||.+|+..... .-.++|..+-.+..|...+. .+..++=+..+.. ...-|..|.|||.+|+||.+
T Consensus 34 ieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp-~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrap 112 (173)
T KOG2836|consen 34 IEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPP-NQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAP 112 (173)
T ss_pred HHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCc-hHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcch
Confidence 4889999999999998644321 23468888877776654432 2222222222221 12357899999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHH
Q 009161 217 SLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLC 258 (541)
Q Consensus 217 tvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~ 258 (541)
.+|+.-|+. .||.+++|++++|++|..+ .|..++..|..|
T Consensus 113 vlvalalie-~gmkyedave~ir~krrga-~n~kql~~leky 152 (173)
T KOG2836|consen 113 VLVALALIE-AGMKYEDAVEMIRQKRRGA-INSKQLLYLEKY 152 (173)
T ss_pred HHHHHHHHH-ccccHHHHHHHHHHHhhcc-ccHHHHHHHHHh
Confidence 998888875 4999999999999999886 676655555444
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.97 E-value=4.8e-09 Score=89.56 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred EEEeeeCCCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHH
Q 009161 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (541)
Q Consensus 169 ~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~---~gg~VLVHC~aGvsRSatvviAYLM~~~------g~Sl~eAl~~Vr 239 (541)
.|+...+.|...++....+.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444455556666655543 3689999999999999999999999763 268889999999
Q ss_pred HHcCccccCcchHHHHH
Q 009161 240 AARGVTNPNMGFACQLL 256 (541)
Q Consensus 240 ~~Rp~i~PN~gF~~QL~ 256 (541)
..|+..-.+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00012 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99998877766555443
No 25
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.97 E-value=4.8e-09 Score=89.56 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred EEEeeeCCCCCCCchHHHHHHHHHHHHHHHh---cCCeEEEEcCCCCchhHHHHHHHHHHhc------CCCHHHHHHHHH
Q 009161 169 VYKTLWLQDSPSEDITSILYDVFDYFEDVRE---QGGRVFVHCCQGVSRSTSLVIAYLMWRE------GQSFEDAFQYVK 239 (541)
Q Consensus 169 ~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~---~gg~VLVHC~aGvsRSatvviAYLM~~~------g~Sl~eAl~~Vr 239 (541)
.|+...+.|...++....+.+.++.+++... .+++|+|||.+|+|||++++++|+|... ..++.+++..+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455566666555444455556666655543 3689999999999999999999999763 268889999999
Q ss_pred HHcCccccCcchHHHHH
Q 009161 240 AARGVTNPNMGFACQLL 256 (541)
Q Consensus 240 ~~Rp~i~PN~gF~~QL~ 256 (541)
..|+..-.+..+...+.
T Consensus 84 ~~r~~~~~~~~q~~~~~ 100 (105)
T smart00404 84 KQRPGMVQTFEQYLFLY 100 (105)
T ss_pred hhhhhhCCcHHHHHHHH
Confidence 99998877766555443
No 26
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=98.90 E-value=5.3e-09 Score=92.87 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=55.1
Q ss_pred cccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC-C---Cc-------cCCCcEEEeeeCCCCCCCchHHHHHHHH
Q 009161 123 CSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC-P---EY-------FKGDLVYKTLWLQDSPSEDITSILYDVF 191 (541)
Q Consensus 123 ~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~-p---~~-------~~~~i~yl~ipl~D~~~~~l~~~l~~av 191 (541)
+.+|.+.+|+++.+...+++.|++.||++|||+..... + .. ...++.|+++|+.-.. +. ...+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~---~~--~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA---IT--EEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC---CC--HHHHH
Confidence 57899999999999999999999999999999974321 1 11 1358999999996422 22 13334
Q ss_pred HHHHHHHhcCCeEEEEcCCCCchhHHHHH
Q 009161 192 DYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (541)
Q Consensus 192 ~fI~~~~~~gg~VLVHC~aGvsRSatvvi 220 (541)
.|.+......++||+||+.|. ||.++.+
T Consensus 77 ~f~~~l~~~~~Pvl~hC~sG~-Ra~~l~~ 104 (110)
T PF04273_consen 77 AFADALESLPKPVLAHCRSGT-RASALWA 104 (110)
T ss_dssp HHHHHHHTTTTSEEEE-SCSH-HHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCh-hHHHHHH
Confidence 444333345689999999997 9876544
No 27
>PLN02727 NAD kinase
Probab=98.67 E-value=8.7e-08 Score=109.66 Aligned_cols=98 Identities=11% Similarity=0.211 Sum_probs=75.5
Q ss_pred CeEECChhhhcCHHHHHHCCCcEEEEcccCCCC--Ccc--------CCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHH
Q 009161 129 HIYLGSDAVAKNRGILRQNGITHVLNCVGFVCP--EYF--------KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVR 198 (541)
Q Consensus 129 ~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p--~~~--------~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~ 198 (541)
.+|.++++...+.+.|.++||+.|||+.++... .+. ..++.|+++|+.+...... +.+.++.+++++
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~-EqVe~fa~~l~~-- 338 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSA-EQVEKFASLVSD-- 338 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCH-HHHHHHHHHHHh--
Confidence 589999999999999999999999999764431 111 2579999999976554432 234445555533
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
...++||+||+.|..|+++++++||.+.-+.
T Consensus 339 slpkPVLvHCKSGarRAGamvA~yl~~~~~~ 369 (986)
T PLN02727 339 SSKKPIYLHSKEGVWRTSAMVSRWKQYMTRS 369 (986)
T ss_pred hcCCCEEEECCCCCchHHHHHHHHHHHHccc
Confidence 3468999999999999999999999977664
No 28
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.66 E-value=1.2e-07 Score=87.66 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=80.7
Q ss_pred HHHHHHCCCcEEEEcccCCCCCccCCCc---EEEeeeCCCCCC------CchHHHHHHHHHHHHHHHhcCCeEEEEcCCC
Q 009161 141 RGILRQNGITHVLNCVGFVCPEYFKGDL---VYKTLWLQDSPS------EDITSILYDVFDYFEDVREQGGRVFVHCCQG 211 (541)
Q Consensus 141 ~~~L~~~gIt~VVnl~~~~~p~~~~~~i---~yl~ipl~D~~~------~~l~~~l~~av~fI~~~~~~gg~VLVHC~aG 211 (541)
.++..+.|-+++|++.........+.++ .++.+-+.|... ..-..+...+++|++++-+. .++||||.+|
T Consensus 25 ae~~~rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aG 103 (172)
T COG5350 25 AETAARHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAG 103 (172)
T ss_pred HHHHhhcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccc
Confidence 3667788999999987532221112211 234444444322 12236789999999988765 8999999999
Q ss_pred CchhHHHH-HHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHH
Q 009161 212 VSRSTSLV-IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (541)
Q Consensus 212 vsRSatvv-iAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~Q 254 (541)
+|||.+++ +|-|.....+.-.++.+.+|..+|.+.||+..+.-
T Consensus 104 ISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI 147 (172)
T COG5350 104 ISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAI 147 (172)
T ss_pred cccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHH
Confidence 99997655 44566677999999999999999999999986543
No 29
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.57 E-value=2.6e-07 Score=91.43 Aligned_cols=82 Identities=15% Similarity=0.228 Sum_probs=59.0
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHh--cCCeEEEEcCCCCchhHHHHHHHHHHhc-----CCCHHHHHHHHHHHcCcccc
Q 009161 175 LQDSPSEDITSILYDVFDYFEDVRE--QGGRVFVHCCQGVSRSTSLVIAYLMWRE-----GQSFEDAFQYVKAARGVTNP 247 (541)
Q Consensus 175 l~D~~~~~l~~~l~~av~fI~~~~~--~gg~VLVHC~aGvsRSatvviAYLM~~~-----g~Sl~eAl~~Vr~~Rp~i~P 247 (541)
+.|...++-...+.+.++.++.... .+++|+|||.+|+|||+++++++++... ..++.+|+..||..|+.+-.
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 4454444333334444444444432 3689999999999999999999987553 68999999999999998877
Q ss_pred CcchHHHHH
Q 009161 248 NMGFACQLL 256 (541)
Q Consensus 248 N~gF~~QL~ 256 (541)
+..+...+.
T Consensus 218 ~~~Qy~f~~ 226 (231)
T cd00047 218 TEEQYIFLY 226 (231)
T ss_pred CHHHHHHHH
Confidence 766555544
No 30
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.49 E-value=5e-07 Score=91.02 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=58.7
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCcccc
Q 009161 174 WLQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNP 247 (541)
Q Consensus 174 pl~D~~~~~l~~~l~~av~fI~~~~~~-gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~P 247 (541)
.+.|...+.-...+.+.+..++..... +++|+|||.+|+|||+++++++++.. ...++.+++..||..|+.+-.
T Consensus 165 ~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~ 244 (258)
T smart00194 165 NWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQ 244 (258)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccC
Confidence 344554442223333344444433332 78999999999999999999988743 368999999999999999888
Q ss_pred CcchHHHHH
Q 009161 248 NMGFACQLL 256 (541)
Q Consensus 248 N~gF~~QL~ 256 (541)
+..+...+.
T Consensus 245 ~~~Qy~f~~ 253 (258)
T smart00194 245 TEEQYIFLY 253 (258)
T ss_pred CHHHHHHHH
Confidence 877665554
No 31
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=4.4e-06 Score=74.50 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=77.9
Q ss_pred ccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCC----CCc-------cCCCcEEEeeeCCCCCCCchHHHHHHH
Q 009161 122 ECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVC----PEY-------FKGDLVYKTLWLQDSPSEDITSILYDV 190 (541)
Q Consensus 122 ~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~----p~~-------~~~~i~yl~ipl~D~~~~~l~~~l~~a 190 (541)
.+.+|.+.|+|++.....|...++.+|++.|||....-. |.. -..++.|.++|+.-..... .++
T Consensus 2 ~i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~iT~-----~dV 76 (130)
T COG3453 2 DIRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGGITE-----ADV 76 (130)
T ss_pred CceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCCCCH-----HHH
Confidence 357899999999999999999999999999999764211 111 1247899999996433221 112
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 009161 191 FDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (541)
Q Consensus 191 v~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~ 241 (541)
-.|-+..-+.+++||.||+.|- ||.++-.--. ...||+.+++.++-+.+
T Consensus 77 ~~f~~Al~eaegPVlayCrsGt-Rs~~ly~~~~-~~~gm~~de~~a~g~a~ 125 (130)
T COG3453 77 EAFQRALDEAEGPVLAYCRSGT-RSLNLYGLGE-LDGGMSRDEIEALGQAA 125 (130)
T ss_pred HHHHHHHHHhCCCEEeeecCCc-hHHHHHHHHH-HhcCCCHHHHHHHHHhh
Confidence 2233333346799999999994 8855433323 45699999887776543
No 32
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.34 E-value=1.8e-06 Score=81.51 Aligned_cols=110 Identities=19% Similarity=0.282 Sum_probs=55.0
Q ss_pred ccC-CeEECChhh---hcCHHHHHHCCCcEEEEcccCC----CCCccCCCcEEEeeeCCCCCCCc---hH----------
Q 009161 126 IAD-HIYLGSDAV---AKNRGILRQNGITHVLNCVGFV----CPEYFKGDLVYKTLWLQDSPSED---IT---------- 184 (541)
Q Consensus 126 I~p-~LyLGs~~~---A~d~~~L~~~gIt~VVnl~~~~----~p~~~~~~i~yl~ipl~D~~~~~---l~---------- 184 (541)
|-+ .||-++... ..+.+.|.++||+.||++.... .|.....++.++++|+.+..... +.
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 444 478877554 3567899999999999997422 24445568999999997554431 11
Q ss_pred HHH------------HHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009161 185 SIL------------YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (541)
Q Consensus 185 ~~l------------~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~ 236 (541)
..+ ....++++......++|||||.+|..|++.+ +|.|+...|.+.++.++
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~-~alll~~lGV~~~~I~~ 158 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVV-AALLLSLLGVPDEDIIA 158 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHH-HHHHHHHTT--HHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHH-HHHHHHHcCCCHHHHHH
Confidence 001 1111122223334579999999999999665 45555667998877653
No 33
>KOG0445 consensus Actin regulatory protein supervillin (gelsolin/villin family) [Cytoskeleton]
Probab=98.24 E-value=1.4e-06 Score=95.75 Aligned_cols=100 Identities=16% Similarity=0.340 Sum_probs=80.0
Q ss_pred CCccceeeeecCCCCCCCccccccccCCCcccccCCCCeEEEeeCCeeEEEecCCCChhhhHHHHHHHHHHHHHhhcCC-
Q 009161 269 PNSMLRIYRIAPHSSYDPLHLVPKLLNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVMMSNRAREAANQVIRYEKAQG- 347 (541)
Q Consensus 269 pss~~RLYRV~g~S~~~~~~lVpk~eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~e~~~e~~~A~~i~~~~~~~~- 347 (541)
|-....|.+|+|....+.+ .|+|..++||++|||||..++.+|.|.|.-+|..|+.++.+++..|+..-...|
T Consensus 220 Pyk~vMLlqVkGr~hVqtR------LVeP~~ssln~gdCF~lv~~~~lf~yvG~faNviEk~kas~lc~~I~~k~dLgCt 293 (919)
T KOG0445|consen 220 PYKRVMLLQVKGRRHVQTR------LVEPRASSLNSGDCFLLVSPHCLFLYVGEFANVIEKAKASELCTLIQTKRDLGCT 293 (919)
T ss_pred CCCceEEEEEcccccceeE------EechhhcccccCceEEEechhHHhhhhhHHHHHHHHhHHHHHHHHHhhcccCCce
Confidence 4445778999997766666 678999999999999999999999999999999999999999988876543333
Q ss_pred --ceEEecCCC----ChhHHHHHcCCCccCCCC
Q 009161 348 --QITSIKEGE----EPLEFWDALVRGQFFADG 374 (541)
Q Consensus 348 --~i~vv~EG~----E~~eFW~~LGgk~~~~~~ 374 (541)
.|+.|.+-. ....||..|||...|.+.
T Consensus 294 At~ivtit~~~~~t~~~~~Fw~llg~qs~~~~~ 326 (919)
T KOG0445|consen 294 ATYIVTITEINTHTHAAKDFWKLLGGQSSYQSA 326 (919)
T ss_pred eEEEEEEeccchhHHHHHHHHHHhCCccchhhc
Confidence 344555532 257999999998888765
No 34
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.24 E-value=7.7e-06 Score=80.92 Aligned_cols=118 Identities=12% Similarity=0.147 Sum_probs=88.9
Q ss_pred cccccccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCc----c-CCCcEEEeeeCCCCC------CCch-HHHHH
Q 009161 121 KECSRIADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEY----F-KGDLVYKTLWLQDSP------SEDI-TSILY 188 (541)
Q Consensus 121 ~~~s~I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~----~-~~~i~yl~ipl~D~~------~~~l-~~~l~ 188 (541)
...+.+.+.||-++++...+..+|+.++++.||.++.+..|+. + ..+|.+.++.++... ..++ ...+.
T Consensus 58 lnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i~ 137 (249)
T KOG1572|consen 58 LNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSIR 137 (249)
T ss_pred ccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHHH
Confidence 3457788899999999999999999999999999987754431 2 358899999886433 2333 33355
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 009161 189 DVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAA 241 (541)
Q Consensus 189 ~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~ 241 (541)
.+++++- .+.+.++||||..|..|+++||.+.- +.++|++.-.++.-+..
T Consensus 138 ~~l~~ll--d~~N~P~Lihc~rGkhRtg~lVgclR-klq~W~lssil~Ey~~f 187 (249)
T KOG1572|consen 138 KALKVLL--DKRNYPILIHCKRGKHRTGCLVGCLR-KLQNWSLSSILDEYLRF 187 (249)
T ss_pred HHHHHHh--cccCCceEEecCCCCcchhhhHHHHH-HHhccchhHHHHHHHHh
Confidence 5555532 23568999999999999999887765 77799988877765544
No 35
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.20 E-value=6.5e-06 Score=89.54 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=64.5
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHHhcC---------CeEEEEcCCCCchhHHHHHHHHHHhc-CCCHHHHHHHHHHHcC
Q 009161 174 WLQDSPSEDITSILYDVFDYFEDVREQG---------GRVFVHCCQGVSRSTSLVIAYLMWRE-GQSFEDAFQYVKAARG 243 (541)
Q Consensus 174 pl~D~~~~~l~~~l~~av~fI~~~~~~g---------g~VLVHC~aGvsRSatvviAYLM~~~-g~Sl~eAl~~Vr~~Rp 243 (541)
.+.|+..++-...+...++.+......+ ..++|||.+|+|||++++++|+|... ..++++.+..+|..|+
T Consensus 430 nWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRn 509 (535)
T PRK15375 430 NWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRN 509 (535)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCC
Confidence 4556655433333555555555442221 23479999999999999999999754 4689999999999999
Q ss_pred c-cccCcchHHHHHHHHhhh
Q 009161 244 V-TNPNMGFACQLLLCQKRV 262 (541)
Q Consensus 244 ~-i~PN~gF~~QL~~~e~~l 262 (541)
. +--...++.+|.+.+..+
T Consensus 510 g~MVQt~eQy~~l~~~~~~~ 529 (535)
T PRK15375 510 NRMLEDASQFVQLKAMQAQL 529 (535)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 7 667888888888887665
No 36
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.14 E-value=1.7e-05 Score=86.36 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=99.8
Q ss_pred cccCCeEECChhhhcC----HHHHHHCCCcEEEEcccCCCC-CccCCCcEEEeeeCCCCC--CCchHHHHHHHHHHHHHH
Q 009161 125 RIADHIYLGSDAVAKN----RGILRQNGITHVLNCVGFVCP-EYFKGDLVYKTLWLQDSP--SEDITSILYDVFDYFEDV 197 (541)
Q Consensus 125 ~I~p~LyLGs~~~A~d----~~~L~~~gIt~VVnl~~~~~p-~~~~~~i~yl~ipl~D~~--~~~l~~~l~~av~fI~~~ 197 (541)
.+..+||+|....... ...-....+..||+|...... ........++++++.... ..++...|++++.|+...
T Consensus 291 ~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~ 370 (451)
T PF04179_consen 291 PGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSH 370 (451)
T ss_pred cCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3567999998766211 111234578999998754322 334556788999987543 356888999999999999
Q ss_pred Hhc--CCeEEEEcCCCCchhHHHHHHHHHHhcCCC----------------HHHHHHHHHHHcCccccCcchHHHHHHH
Q 009161 198 REQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS----------------FEDAFQYVKAARGVTNPNMGFACQLLLC 258 (541)
Q Consensus 198 ~~~--gg~VLVHC~aGvsRSatvviAYLM~~~g~S----------------l~eAl~~Vr~~Rp~i~PN~gF~~QL~~~ 258 (541)
+.+ +++|||||..|...|++|++|.|++.++.. ..+-+.+|-+.+|.++|..+.++++..|
T Consensus 371 L~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 371 LSSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred hcccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 887 899999999999999999999999986532 2345666777788888888888877655
No 37
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.13 E-value=9.4e-06 Score=87.88 Aligned_cols=142 Identities=17% Similarity=0.146 Sum_probs=93.6
Q ss_pred ccccccccCCeEECChhhhcCHHHHHHCC--------------CcEEEEcccCCCCCccCCCcEEEeeeCCCCCCCchHH
Q 009161 120 DKECSRIADHIYLGSDAVAKNRGILRQNG--------------ITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITS 185 (541)
Q Consensus 120 ~~~~s~I~p~LyLGs~~~A~d~~~L~~~g--------------It~VVnl~~~~~p~~~~~~i~yl~ipl~D~~~~~l~~ 185 (541)
+..++-|+++|..-++++..... +.++. ==.|.||+.+.......-.-....+++.|...+.+ +
T Consensus 12 DLDltYIT~rIIamsfPa~~~es-~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L-~ 89 (434)
T KOG2283|consen 12 DLDLTYITSRIIAMSFPAEGIES-LYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPL-E 89 (434)
T ss_pred cccceeeeeeEEEEeCCCCcchh-hhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcH-H
Confidence 44556666666666655543322 22332 23466776432211111111344578888888876 4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEcCCCCchhHHHHHHHHHHhcCCC-HHHHHHHHHHHc---C--ccccCcchHHHHHH
Q 009161 186 ILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQS-FEDAFQYVKAAR---G--VTNPNMGFACQLLL 257 (541)
Q Consensus 186 ~l~~av~fI~~~~~~--gg~VLVHC~aGvsRSatvviAYLM~~~g~S-l~eAl~~Vr~~R---p--~i~PN~gF~~QL~~ 257 (541)
.+..+++-++.++.+ ..-|.|||++|.+|++++++||||+..-.. .++|+.+.-.+| . ...--+.+.+.+.-
T Consensus 90 ~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y 169 (434)
T KOG2283|consen 90 LLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGY 169 (434)
T ss_pred HHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHH
Confidence 577788888888764 578999999999999999999999986554 999999999999 3 12334557777777
Q ss_pred HHhhhc
Q 009161 258 CQKRVH 263 (541)
Q Consensus 258 ~e~~l~ 263 (541)
|+..+.
T Consensus 170 ~~~~l~ 175 (434)
T KOG2283|consen 170 FSRVLL 175 (434)
T ss_pred HHHHhh
Confidence 777443
No 38
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.97 E-value=3.5e-05 Score=75.29 Aligned_cols=70 Identities=16% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHh----cCCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcchHHHHHH
Q 009161 188 YDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQLLL 257 (541)
Q Consensus 188 ~~av~fI~~~~~----~gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~ 257 (541)
..++++++...+ ..++|+|||..|+|||++++++.+|.. ...++.+++..+|+.|+.+-.+..+...+..
T Consensus 153 ~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~ 231 (235)
T PF00102_consen 153 ESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYM 231 (235)
T ss_dssp HHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHH
T ss_pred chhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHH
Confidence 334455544433 459999999999999999999988764 2479999999999999998888776655543
No 39
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.78 E-value=4.4e-05 Score=71.35 Aligned_cols=59 Identities=17% Similarity=0.376 Sum_probs=43.8
Q ss_pred CCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHHH
Q 009161 165 KGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLMW 225 (541)
Q Consensus 165 ~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM~ 225 (541)
..++.|++||+.|...+. ...+++.++|+... .++..+.+||.+|.||+.+.++.|.|.
T Consensus 90 ~~g~~Y~Ripitd~~~P~-~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 90 GNGLRYYRIPITDHQAPD-PEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HTT-EEEEEEE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCcCCCC-HHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999986664 46688888898888 668999999999999999988888774
No 40
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=97.78 E-value=0.00013 Score=75.94 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=41.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcchH
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFA 252 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF~ 252 (541)
.++|+|||.+|+||||++++...+.. ...++.+++..+|..|+..-.+..+.
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY 285 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQY 285 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHH
Confidence 37999999999999999988776543 24578899999999999876665533
No 41
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=97.72 E-value=0.00018 Score=75.20 Aligned_cols=54 Identities=13% Similarity=0.214 Sum_probs=44.0
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcchHHHH
Q 009161 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (541)
Q Consensus 202 g~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL 255 (541)
++|+|||.+|+||||++++.-++.. ...+..+++..+|..|+..-.+..+...+
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~ 288 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHH
Confidence 6999999999999999998875432 36789999999999999887776544444
No 42
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=97.70 E-value=0.00018 Score=75.44 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred CeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcchHHHH
Q 009161 202 GRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQL 255 (541)
Q Consensus 202 g~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL 255 (541)
++|+|||.+|+||||++++...+.. ...++.+++..+|..|+..-.+..+...+
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~ 306 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFC 306 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHH
Confidence 7999999999999999998655432 35789999999999999877776544433
No 43
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=97.63 E-value=0.00031 Score=72.98 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcch
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGF 251 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF 251 (541)
.++|+|||.+|+||||++++...+.. ...++.+++..+|..|+..-.+..+
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~Q 276 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDD 276 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHH
Confidence 47999999999999999987765542 3568999999999999987666543
No 44
>PHA02738 hypothetical protein; Provisional
Probab=97.53 E-value=0.00045 Score=72.39 Aligned_cols=54 Identities=13% Similarity=0.078 Sum_probs=42.3
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccCcchHHH
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPNMGFACQ 254 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~Q 254 (541)
.++|+|||.+|+|||+++++.-.+.. ...++.+++..+|..|+..-.+..+...
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F 285 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFF 285 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHH
Confidence 36899999999999999876664332 3568899999999999987666654443
No 45
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=97.49 E-value=0.00015 Score=73.36 Aligned_cols=121 Identities=15% Similarity=0.162 Sum_probs=73.5
Q ss_pred CeEECChhhhcCHH--HHHHCCCcEEEEcccCCC--CCccCCCc----EEEeeeCCCCCCCch-HHHHHHHHHHHHHHHh
Q 009161 129 HIYLGSDAVAKNRG--ILRQNGITHVLNCVGFVC--PEYFKGDL----VYKTLWLQDSPSEDI-TSILYDVFDYFEDVRE 199 (541)
Q Consensus 129 ~LyLGs~~~A~d~~--~L~~~gIt~VVnl~~~~~--p~~~~~~i----~yl~ipl~D~~~~~l-~~~l~~av~fI~~~~~ 199 (541)
.+|.++.+...+.. .....+|..++++.++.. -....... ....+...+...... ....+....++.-.+.
T Consensus 54 ~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~ 133 (249)
T COG2365 54 IDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLAD 133 (249)
T ss_pred eEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHhh
Confidence 46777777665554 777888888888764111 00111110 111111111111111 1123444455555555
Q ss_pred cC-CeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcCccccCc
Q 009161 200 QG-GRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNM 249 (541)
Q Consensus 200 ~g-g~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~ 249 (541)
.+ ++||+||.+|..|++.+++.|++...++.-..+-++++..++......
T Consensus 134 ~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 134 AENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred cccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhH
Confidence 44 999999999999999999999999877777788888888777654444
No 46
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=97.28 E-value=0.00041 Score=73.90 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=78.0
Q ss_pred CCcEEEEcccCC----CCCccCCCcEEEeeeCCCC---CCCchHHHH-HHHHHHHHHHHhcCCeEEEEcCCCCchhHHHH
Q 009161 148 GITHVLNCVGFV----CPEYFKGDLVYKTLWLQDS---PSEDITSIL-YDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (541)
Q Consensus 148 gIt~VVnl~~~~----~p~~~~~~i~yl~ipl~D~---~~~~l~~~l-~~av~fI~~~~~~gg~VLVHC~aGvsRSatvv 219 (541)
.|..+|+++... .+.....++.|+.+...-. +.......| ..+-.|+.+....+.=|+|||.+|.+|++-++
T Consensus 63 ~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI 142 (393)
T KOG2386|consen 63 KVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLI 142 (393)
T ss_pred eEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceee
Confidence 356677765421 1223344666766655322 222222333 33445666677778999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHcCccccCcchHHHHHHHHhh
Q 009161 220 IAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLLCQKR 261 (541)
Q Consensus 220 iAYLM~~~g~Sl~eAl~~Vr~~Rp~i~PN~gF~~QL~~~e~~ 261 (541)
++|||...+|+..+|++.+...|+-..-....+..|...+..
T Consensus 143 ~~yL~~~~~~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~ 184 (393)
T KOG2386|consen 143 CAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHD 184 (393)
T ss_pred eeeeeeccCccHHHHHHHHHHhCCCccCchHHHHHHhhcccc
Confidence 999999999999999999999998665555566666554443
No 47
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.14 E-value=0.0014 Score=76.22 Aligned_cols=80 Identities=18% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHHhc-CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCccccC
Q 009161 175 LQDSPSEDITSILYDVFDYFEDVREQ-GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVTNPN 248 (541)
Q Consensus 175 l~D~~~~~l~~~l~~av~fI~~~~~~-gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i~PN 248 (541)
+.|++.++=..+|-+-++.|...++. +-+|+|||.+|+|||++++++-+|.. .....-+.+..+|..|-.+-++
T Consensus 1036 WPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT 1115 (1144)
T KOG0792|consen 1036 WPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQT 1115 (1144)
T ss_pred cccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccc
Confidence 44665555445555555556656655 56999999999999999886655543 3567778899999999888788
Q ss_pred cchHHH
Q 009161 249 MGFACQ 254 (541)
Q Consensus 249 ~gF~~Q 254 (541)
..+...
T Consensus 1116 ~~QYkF 1121 (1144)
T KOG0792|consen 1116 LSQYKF 1121 (1144)
T ss_pred hHHhhH
Confidence 774433
No 48
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.03 E-value=0.0015 Score=66.03 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=50.3
Q ss_pred eCCCCCCCchHHHHHHHHHHHHHHH---hcCCeEEEEcCCCCchhHHHHHHHHHHh-cCCC-------------HHHHHH
Q 009161 174 WLQDSPSEDITSILYDVFDYFEDVR---EQGGRVFVHCCQGVSRSTSLVIAYLMWR-EGQS-------------FEDAFQ 236 (541)
Q Consensus 174 pl~D~~~~~l~~~l~~av~fI~~~~---~~gg~VLVHC~aGvsRSatvviAYLM~~-~g~S-------------l~eAl~ 236 (541)
.+.|...+++. ..+++++... -++++++|||.||+||+||+++.-.+.+ ..-+ ..+...
T Consensus 192 nW~D~~~p~i~----sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~ 267 (302)
T COG5599 192 NWVDFNVPDIR----SLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVL 267 (302)
T ss_pred CccccCCcCHH----HHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHH
Confidence 34577777653 4555555444 2579999999999999999887764443 2221 234566
Q ss_pred HHHHHcCccccCcchHHHHH
Q 009161 237 YVKAARGVTNPNMGFACQLL 256 (541)
Q Consensus 237 ~Vr~~Rp~i~PN~gF~~QL~ 256 (541)
.+|+.|-..--|..+...|.
T Consensus 268 ~LRsQRmkmVQn~~Qf~flY 287 (302)
T COG5599 268 SLRSQRMKMVQNKTQFKFLY 287 (302)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 67777765555555444443
No 49
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=96.67 E-value=0.0024 Score=68.29 Aligned_cols=109 Identities=20% Similarity=0.322 Sum_probs=63.7
Q ss_pred HHHHHHCCCcEEEEcccCCCCCcc---------------CCCcEEEeeeCCCCCCCc----hHHHHHHHHHHHHHHHhcC
Q 009161 141 RGILRQNGITHVLNCVGFVCPEYF---------------KGDLVYKTLWLQDSPSED----ITSILYDVFDYFEDVREQG 201 (541)
Q Consensus 141 ~~~L~~~gIt~VVnl~~~~~p~~~---------------~~~i~yl~ipl~D~~~~~----l~~~l~~av~fI~~~~~~g 201 (541)
...++..|+-.|-|+.+.....+. ..-+.|+.+-+.|++.+. ++.+|+++..- .+.+..-
T Consensus 373 e~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~r-q~~l~~A 451 (600)
T KOG0790|consen 373 EGALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHR-QESLMDA 451 (600)
T ss_pred ccchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhh-hcccccc
Confidence 345677888888776532221111 112345545555655432 22333332222 2223345
Q ss_pred CeEEEEcCCCCchhHHHH-HHHHHHh---c----CCCHHHHHHHHHHHcCccccCcc
Q 009161 202 GRVFVHCCQGVSRSTSLV-IAYLMWR---E----GQSFEDAFQYVKAARGVTNPNMG 250 (541)
Q Consensus 202 g~VLVHC~aGvsRSatvv-iAYLM~~---~----g~Sl~eAl~~Vr~~Rp~i~PN~g 250 (541)
++|.|||.+||||++|++ |-.||-. . .++....+++||+.|...--...
T Consensus 452 gpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEa 508 (600)
T KOG0790|consen 452 GPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEA 508 (600)
T ss_pred CcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHH
Confidence 799999999999999875 4444432 2 46888999999999986544444
No 50
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.50 E-value=0.0092 Score=63.93 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=40.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHH-HHHh--c---CCCHHHHHHHHHHHcCccccCcchHHH
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAY-LMWR--E---GQSFEDAFQYVKAARGVTNPNMGFACQ 254 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAY-LM~~--~---g~Sl~eAl~~Vr~~Rp~i~PN~gF~~Q 254 (541)
+.+++.|||.+|+||++++++.. .|.. . .....+.+..+|..|+.+..+..+...
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f 358 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLF 358 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHH
Confidence 46899999999999999999655 3332 1 234788888899999877666665433
No 51
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=95.56 E-value=0.044 Score=57.79 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=54.3
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHh-cCCeEEEEcCCCCchhHHHHHHHHHHh-cC----CCHHHHHHHHHHHcCccc
Q 009161 173 LWLQDSPSEDITSILYDVFDYFEDVRE-QGGRVFVHCCQGVSRSTSLVIAYLMWR-EG----QSFEDAFQYVKAARGVTN 246 (541)
Q Consensus 173 ipl~D~~~~~l~~~l~~av~fI~~~~~-~gg~VLVHC~aGvsRSatvviAYLM~~-~g----~Sl~eAl~~Vr~~Rp~i~ 246 (541)
..+.|.+...-...+-+.+..+.+... ..++++|||.+|++|++|+++.--+.+ .+ .+.-..+..+|..|+..-
T Consensus 258 ~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mV 337 (374)
T KOG0791|consen 258 TAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMV 337 (374)
T ss_pred eeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhcccccc
Confidence 344555544222222223333333332 368999999999999999887764443 22 234456677788889888
Q ss_pred cCcchHHHHHHH
Q 009161 247 PNMGFACQLLLC 258 (541)
Q Consensus 247 PN~gF~~QL~~~ 258 (541)
++..+.-.|.++
T Consensus 338 qte~Qyvfl~~c 349 (374)
T KOG0791|consen 338 QTEDQYVFLHQC 349 (374)
T ss_pred chHHHHHHHHHH
Confidence 998877777654
No 52
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=94.14 E-value=0.21 Score=46.53 Aligned_cols=101 Identities=21% Similarity=0.280 Sum_probs=54.1
Q ss_pred ccCCeEECChhhhcCHHHHHHCCCcEEEEcccCCCCCccCCCcEEEeeeCCCCCCCchHHHHHHHHHHHHHHHhc---CC
Q 009161 126 IADHIYLGSDAVAKNRGILRQNGITHVLNCVGFVCPEYFKGDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQ---GG 202 (541)
Q Consensus 126 I~p~LyLGs~~~A~d~~~L~~~gIt~VVnl~~~~~p~~~~~~i~yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~---gg 202 (541)
|.++||.+..... .++..=+|-.++-+ .+.|..+ -.|.+.-++. ++..-+..+++.++. .+
T Consensus 4 i~drLyf~~~~~~-----p~~~~~~~yF~iD~---------~l~Y~~F-~~DFGPlnL~-~lyrfc~~l~~~L~~~~~~~ 67 (141)
T PF14671_consen 4 IPDRLYFASLRNK-----PKSTPNTHYFSIDD---------ELVYENF-YADFGPLNLA-QLYRFCCKLNKKLKSPELKK 67 (141)
T ss_dssp SSSSEEEEE-SS---------BTTEEEEE-TT---------TS----S-SS------HH-HHHHHHHHHHHHHH-GGGTT
T ss_pred CCCcEEEEEeCCC-----CCCCCCcEEEEeCC---------eEEEecc-cCcCCCccHH-HHHHHHHHHHHHHcCHHhcC
Confidence 5678888776541 12223344454321 2344433 3466767764 466666666666654 67
Q ss_pred eEEEEcCCCCch----hHHHHHHHHHHhcCCCHHHHHHHHHHHc
Q 009161 203 RVFVHCCQGVSR----STSLVIAYLMWREGQSFEDAFQYVKAAR 242 (541)
Q Consensus 203 ~VLVHC~aGvsR----SatvviAYLM~~~g~Sl~eAl~~Vr~~R 242 (541)
+.+|||...-.+ ++.++.||+|...+|+.++|++.+...-
T Consensus 68 k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~~~ 111 (141)
T PF14671_consen 68 KKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLASIQ 111 (141)
T ss_dssp SEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTTTT
T ss_pred CeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 888998765433 4888999999999999999999998764
No 53
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.35 Score=56.06 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=30.0
Q ss_pred cCCCcccccCCCCeEEEeeCCeeEEEecCCCChh
Q 009161 294 LNYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (541)
Q Consensus 294 eV~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~ 327 (541)
-|..+...|+.++||+|++|.++|+|.|..++..
T Consensus 880 ~VraS~e~l~negiYll~nG~~~ylwvg~sv~~~ 913 (1007)
T KOG1984|consen 880 AVRASSEFLSNEGIYLLDNGQKIYLWVGESVDPD 913 (1007)
T ss_pred ceecchhhccCCceEEEecCcEEEEEecCCCCHH
Confidence 3566777899999999999999999999999874
No 54
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=92.53 E-value=0.28 Score=55.63 Aligned_cols=89 Identities=13% Similarity=0.224 Sum_probs=53.4
Q ss_pred eeCCCCCCCchHHHHHHHHHHHHHHHh-cCCeEEEEcCCCCchhHHHHHHHHHH----h--cCCCHHHHHHHHHHHcCcc
Q 009161 173 LWLQDSPSEDITSILYDVFDYFEDVRE-QGGRVFVHCCQGVSRSTSLVIAYLMW----R--EGQSFEDAFQYVKAARGVT 245 (541)
Q Consensus 173 ipl~D~~~~~l~~~l~~av~fI~~~~~-~gg~VLVHC~aGvsRSatvviAYLM~----~--~g~Sl~eAl~~Vr~~Rp~i 245 (541)
+.+.+...+.-...|-+.-..++++.+ +..+|+|||..|-||+++-++-=++. + ..++....++++|..||.+
T Consensus 898 LSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~Gm 977 (1004)
T KOG0793|consen 898 LSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGM 977 (1004)
T ss_pred ecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcc
Confidence 334444444333333333333444443 35799999999999998855433322 2 2457778899999999965
Q ss_pred -ccCcchHHHHHHHHhh
Q 009161 246 -NPNMGFACQLLLCQKR 261 (541)
Q Consensus 246 -~PN~gF~~QL~~~e~~ 261 (541)
.-...|...|...-+.
T Consensus 978 VaTkdQFef~l~aVAeE 994 (1004)
T KOG0793|consen 978 VATKDQFEFALTAVAEE 994 (1004)
T ss_pred eeehhhhHHHHHHHHHH
Confidence 4455566666554443
No 55
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.54 E-value=0.6 Score=52.21 Aligned_cols=39 Identities=31% Similarity=0.549 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHH-HHHHHH
Q 009161 187 LYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV-IAYLMW 225 (541)
Q Consensus 187 l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvv-iAYLM~ 225 (541)
|..|+...++....+..|||||..|-.|++-++ +|-||.
T Consensus 360 Laga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsLA~LlL 399 (717)
T KOG4471|consen 360 LAGAVRIADKVESESRSVLVHCSDGWDRTAQLVSLAMLLL 399 (717)
T ss_pred HHHHHHHHHHHhcCCceEEEEcCCCccchHHHHHHHHHHh
Confidence 455555556666678999999999999999877 455654
No 56
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=89.11 E-value=0.46 Score=56.50 Aligned_cols=56 Identities=18% Similarity=0.374 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhc----CCeEEEEcCCCCchhHHHHHHH-----HHHhcCCCHHHHHHHHHHHcCc
Q 009161 189 DVFDYFEDVREQ----GGRVFVHCCQGVSRSTSLVIAY-----LMWREGQSFEDAFQYVKAARGV 244 (541)
Q Consensus 189 ~av~fI~~~~~~----gg~VLVHC~aGvsRSatvviAY-----LM~~~g~Sl~eAl~~Vr~~Rp~ 244 (541)
..+.|+.+.+.- .|+++|||.+|+||+++.++-= ++.....+.-.-...+|..|..
T Consensus 714 ~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~ 778 (1087)
T KOG4228|consen 714 GLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNN 778 (1087)
T ss_pred HHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcccc
Confidence 456777766643 4999999999999999865322 2222234444555555555653
No 57
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Probab=86.27 E-value=1.3 Score=51.03 Aligned_cols=30 Identities=17% Similarity=0.543 Sum_probs=27.4
Q ss_pred CcccccCCCCeEEEeeCCeeEEEecCCCCh
Q 009161 297 PVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (541)
Q Consensus 297 ~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~ 326 (541)
.+.+.|+++++|+||++.+||+|.|+.++.
T Consensus 738 aT~s~le~~GlYLidtg~~iflw~g~d~~p 767 (861)
T COG5028 738 ATSSLLESGGLYLIDTGQKIFLWFGKDAVP 767 (861)
T ss_pred hhHHHHhcCCeEEEEcCCEEEEEecCCCCH
Confidence 455678999999999999999999999987
No 58
>PTZ00395 Sec24-related protein; Provisional
Probab=85.54 E-value=3.3 Score=50.67 Aligned_cols=33 Identities=12% Similarity=0.248 Sum_probs=29.6
Q ss_pred CCCcccccCCCCeEEEeeCCeeEEEecCCCChh
Q 009161 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCSVM 327 (541)
Q Consensus 295 V~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~~ 327 (541)
+..+...|.++++|||+.|..||+|+|+.++..
T Consensus 1434 LrLS~ErLesdGIYLLDNGe~IyLWVG~~V~Pq 1466 (1560)
T PTZ00395 1434 IPSSAEKIYSNGIYLLDACTHFYLYFGFHSDAN 1466 (1560)
T ss_pred ccchHHHhcCCcEEEEECCCEEEEEECCCCCHH
Confidence 466778899999999999999999999999773
No 59
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=82.17 E-value=1.8 Score=51.74 Aligned_cols=45 Identities=18% Similarity=0.330 Sum_probs=33.5
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHh-----cCCCHHHHHHHHHHHcCcc
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWR-----EGQSFEDAFQYVKAARGVT 245 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~-----~g~Sl~eAl~~Vr~~Rp~i 245 (541)
.+++.|||..|.+||++++++-++.. .-++.=+|.+.+|..||..
T Consensus 1018 ~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~m 1067 (1087)
T KOG4228|consen 1018 DGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGM 1067 (1087)
T ss_pred CCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccc
Confidence 58999999999999998887665443 1235556777777777755
No 60
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=74.02 E-value=7 Score=41.75 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=16.6
Q ss_pred hcCCeEEEEcCCCCchhHHHH
Q 009161 199 EQGGRVFVHCCQGVSRSTSLV 219 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvv 219 (541)
.+|..|||||..|..|++-|+
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~ 249 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLS 249 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHH
Confidence 688999999999999996654
No 61
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.75 E-value=3.7 Score=47.73 Aligned_cols=31 Identities=19% Similarity=0.550 Sum_probs=28.0
Q ss_pred CCcccccCCCCeEEEeeCCeeEEEecCCCCh
Q 009161 296 YPVAQGFDTRGAFIVLVPSAIYVWIGKNCSV 326 (541)
Q Consensus 296 ~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss~ 326 (541)
..+...|.++++|++|+|..+|+|.|+.|..
T Consensus 764 ~ltae~l~~~GlyL~D~g~~lfl~vg~~a~P 794 (887)
T KOG1985|consen 764 NLTAELLSRRGLYLMDTGTTLFLWVGSNADP 794 (887)
T ss_pred chHHHHhccCceEEEecCcEEEEEEcCCCCc
Confidence 4456788999999999999999999999987
No 62
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=70.96 E-value=8.2 Score=43.58 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=25.5
Q ss_pred HHHHHHHHh-cCCeEEEEcCCCCchhHHHH-HHHHHH
Q 009161 191 FDYFEDVRE-QGGRVFVHCCQGVSRSTSLV-IAYLMW 225 (541)
Q Consensus 191 v~fI~~~~~-~gg~VLVHC~aGvsRSatvv-iAYLM~ 225 (541)
..+|.+++. +|-.|||||.-|..|+..|+ +|=||.
T Consensus 333 a~~ia~~l~~~~~sVlvhcsdGwDrT~qV~SLaQllL 369 (573)
T KOG1089|consen 333 AAEIAKCLSSEGASVLVHCSDGWDRTCQVSSLAQLLL 369 (573)
T ss_pred HHHHHHHHHhCCCeEEEEccCCcchhHHHHHHHHHHh
Confidence 335555666 56899999999999997766 444553
No 63
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=68.94 E-value=18 Score=30.69 Aligned_cols=29 Identities=31% Similarity=0.506 Sum_probs=19.6
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
.++.+|+|+|..| .||... +.+| ...|.+
T Consensus 59 ~~~~~ivvyC~~G-~rs~~a-~~~L-~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGG-IRCEKA-SAYL-KERGFK 87 (101)
T ss_pred cCCCEEEEECCCc-hhHHHH-HHHH-HHhCCc
Confidence 4678999999998 588643 3344 455653
No 64
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=64.49 E-value=14 Score=31.30 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHCCCcEEEEcccCCCCCccC-CCcE-EEeeeCCCCCCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHH
Q 009161 142 GILRQNGITHVLNCVGFVCPEYFK-GDLV-YKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLV 219 (541)
Q Consensus 142 ~~L~~~gIt~VVnl~~~~~p~~~~-~~i~-yl~ipl~D~~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvv 219 (541)
..+...+-..||++... .++.. .-.. ..++|+.+...... ... ..++++|+|+|..|. || ..+
T Consensus 13 ~~~~~~~~~~liDvR~~--~e~~~~~i~~~~~~ip~~~~~~~~~---------~~~--~~~~~~ivv~C~~G~-rS-~~a 77 (110)
T COG0607 13 ALLLAGEDAVLLDVREP--EEYERGHIPGAAINIPLSELKAAEN---------LLE--LPDDDPIVVYCASGV-RS-AAA 77 (110)
T ss_pred HHhhccCCCEEEeccCh--hHhhhcCCCcceeeeecccchhhhc---------ccc--cCCCCeEEEEeCCCC-Ch-HHH
Confidence 34445566788887643 11211 1112 55666655433210 000 567899999999996 77 445
Q ss_pred HHHHHHh
Q 009161 220 IAYLMWR 226 (541)
Q Consensus 220 iAYLM~~ 226 (541)
+.+|...
T Consensus 78 a~~L~~~ 84 (110)
T COG0607 78 AAALKLA 84 (110)
T ss_pred HHHHHHc
Confidence 5555443
No 65
>PLN02160 thiosulfate sulfurtransferase
Probab=57.99 E-value=16 Score=33.37 Aligned_cols=30 Identities=20% Similarity=0.312 Sum_probs=20.3
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
...+++|+|||..| .||... +.++...|.+
T Consensus 78 ~~~~~~IivyC~sG-~RS~~A--a~~L~~~G~~ 107 (136)
T PLN02160 78 LNPADDILVGCQSG-ARSLKA--TTELVAAGYK 107 (136)
T ss_pred cCCCCcEEEECCCc-HHHHHH--HHHHHHcCCC
Confidence 35678999999999 588654 3333455654
No 66
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=55.19 E-value=25 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
++.+|+|||..|. ||.. ++ .+++..|.
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~-~~L~~~G~ 91 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GA-QSLINAGL 91 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HH-HHHHHCCC
Confidence 4679999999996 7733 33 33445565
No 67
>PLN00162 transport protein sec23; Provisional
Probab=48.87 E-value=37 Score=40.09 Aligned_cols=70 Identities=7% Similarity=0.038 Sum_probs=44.6
Q ss_pred CCCcccccCCCCeEEEeeCCeeEEEecCCCC-----------hhh-----hHHHHHHHHHHHHHhhcCCceEEecCCCCh
Q 009161 295 NYPVAQGFDTRGAFIVLVPSAIYVWIGKNCS-----------VMM-----SNRAREAANQVIRYEKAQGQITSIKEGEEP 358 (541)
Q Consensus 295 V~~~~ssLnS~DvFILd~~~~IyvW~Gk~ss-----------~~e-----~~~e~~~A~~i~~~~~~~~~i~vv~EG~E~ 358 (541)
+.....+|.++.+|+||++-.|+||+|.... ..+ .+..+.-|+.|....-+...++++++|..-
T Consensus 635 v~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~~~~~~~~~~~~~~~~~l~~p~~~a~~~~~~Rfp~Pr~i~~~~~~Sq 714 (761)
T PLN00162 635 VLLDVASIAADRILLLDSYFSVVIFHGSTIAQWRKAGYHNQPEHEAFAQLLEAPQADAQAIIKERFPVPRLVVCDQHGSQ 714 (761)
T ss_pred eecchhhccCCceEEEeCCCEEEEEecCcccchhhcCCCCCcchhhHHHHHHhHHHHHHHHHhcCCCCCeEEEeCCCCcH
Confidence 4566778999999999999999999994221 101 111122234443321255568889999877
Q ss_pred hHHHHH
Q 009161 359 LEFWDA 364 (541)
Q Consensus 359 ~eFW~~ 364 (541)
+.|.-+
T Consensus 715 aRfl~~ 720 (761)
T PLN00162 715 ARFLLA 720 (761)
T ss_pred HHHHHH
Confidence 777444
No 68
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=46.00 E-value=34 Score=26.39 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH
Q 009161 216 TSLVIAYLMWREGQSFEDAFQYVKAA 241 (541)
Q Consensus 216 atvviAYLM~~~g~Sl~eAl~~Vr~~ 241 (541)
..-+.+.||..+|++.++|+++++..
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~ 40 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQ 40 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 45678899999999999999999875
No 69
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=44.96 E-value=30 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.6
Q ss_pred eEEEEcCCCCchhHHHHH
Q 009161 203 RVFVHCCQGVSRSTSLVI 220 (541)
Q Consensus 203 ~VLVHC~aGvsRSatvvi 220 (541)
.|-|=|++|..||++++=
T Consensus 244 tIaiGCTGG~HRSV~iae 261 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAE 261 (284)
T ss_pred EEEEEcCCCcCcHHHHHH
Confidence 688889999999998763
No 70
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=44.89 E-value=76 Score=26.51 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=40.4
Q ss_pred HCCCcEEEEcccCCC--CCccCCCcEEEeeeCCCC---CCCchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHH
Q 009161 146 QNGITHVLNCVGFVC--PEYFKGDLVYKTLWLQDS---PSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVI 220 (541)
Q Consensus 146 ~~gIt~VVnl~~~~~--p~~~~~~i~yl~ipl~D~---~~~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvvi 220 (541)
..+=..||+|..... ....+ + -.++|.... ........+............++..|+|+|..|. |+...+.
T Consensus 10 ~~~~~~liD~R~~~~~~~~hI~-g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~ 85 (113)
T PF00581_consen 10 ENESVLLIDVRSPEEYERGHIP-G--AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAA 85 (113)
T ss_dssp TTTTEEEEEESSHHHHHHSBET-T--EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHH
T ss_pred hCCCeEEEEeCCHHHHHcCCCC-C--Cccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHH
Confidence 456678888764211 01111 1 255665322 2222333344444444444457789999997775 4433333
Q ss_pred ---HHHHHhcCCC
Q 009161 221 ---AYLMWREGQS 230 (541)
Q Consensus 221 ---AYLM~~~g~S 230 (541)
++++...|+.
T Consensus 86 ~~~~~~l~~~g~~ 98 (113)
T PF00581_consen 86 ARVAWILKKLGFK 98 (113)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHcCCC
Confidence 3445555653
No 71
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=44.55 E-value=34 Score=29.90 Aligned_cols=31 Identities=16% Similarity=-0.064 Sum_probs=20.8
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
+..+.+|+|+|..| ++.++.++.+| ...|+.
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHH-HHcCCC
Confidence 34578999999998 56666555444 444654
No 72
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=44.48 E-value=49 Score=27.87 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
++.+|+|+|..| .||... +.+| ...|.+
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l-~~~G~~ 84 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWL-LRQGFE 84 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHH-HHcCCc
Confidence 478999999998 477443 3333 345654
No 73
>smart00400 ZnF_CHCC zinc finger.
Probab=42.95 E-value=26 Score=26.85 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=24.2
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH
Q 009161 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYV 238 (541)
Q Consensus 205 LVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~V 238 (541)
..||.+ -++.+- +|.++|+.+++++.+|++.+
T Consensus 23 ~~~Cf~-cg~gGd-~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 23 FFHCFG-CGAGGN-VISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred EEEEeC-CCCCCC-HHHHHHHHHCcCHHHHHHHh
Confidence 478864 344444 58888999999999999875
No 74
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=42.65 E-value=31 Score=28.98 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=18.9
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
.++++|+|+|..|. ||.. ++..| ...|.+
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L-~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELL-AERGYD 87 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHH-HHcCce
Confidence 46789999999995 7743 33333 455653
No 75
>PRK01415 hypothetical protein; Validated
Probab=41.64 E-value=65 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
.++++|+++|+.|+ || ..++++|. ..|..
T Consensus 169 ~k~k~Iv~yCtgGi-Rs-~kAa~~L~-~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RC-EKSTSLLK-SIGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HH-HHHHHHHH-HcCCC
Confidence 46789999999995 87 44556654 34543
No 76
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.29 E-value=67 Score=31.47 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHH
Q 009161 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (541)
Q Consensus 183 l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM 224 (541)
+.+.+.++++.|.+++.++++|++. |.|+|++++..+-+
T Consensus 23 ~~~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 23 LPDAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 3456888888999999999999987 88889776654433
No 77
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=39.09 E-value=36 Score=32.09 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.8
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
.++.+|+|+|..|..||.. +++++...|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~--aa~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN--AAKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHH--HHHHHHhcCCc
Confidence 4678999999998877765 45555565653
No 78
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=38.15 E-value=58 Score=29.02 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
+.++.+|+|+|..|-.||.. +++++...|.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~--a~~~L~~~G~ 112 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQS--LAWLLESLGI 112 (128)
T ss_pred cCCCCeEEEEeCCCCccHHH--HHHHHHHcCC
Confidence 45678999999854457764 3366666675
No 79
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=37.95 E-value=38 Score=35.23 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHH----hcCC---eEEEEcCCCCchhHHHHH
Q 009161 185 SILYDVFDYFEDVR----EQGG---RVFVHCCQGVSRSTSLVI 220 (541)
Q Consensus 185 ~~l~~av~fI~~~~----~~gg---~VLVHC~aGvsRSatvvi 220 (541)
..+..+.++++.++ ++|+ .|-|=|++|..||++++-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 222 EFLDKIRDLLEFWLPGYEREGKSYLTIAIGCTGGQHRSVAIAE 264 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEecCCCcccHHHHHH
Confidence 34555555555433 3342 477889999999998763
No 80
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=35.20 E-value=56 Score=28.71 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=18.8
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
....+|+|+|..| .||...+ .++...|.
T Consensus 62 ~~~~~ivv~C~~G-~rs~~aa--~~L~~~G~ 89 (117)
T cd01522 62 GKDRPVLLLCRSG-NRSIAAA--EAAAQAGF 89 (117)
T ss_pred CCCCeEEEEcCCC-ccHHHHH--HHHHHCCC
Confidence 5678999999998 4776543 33345554
No 81
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=34.61 E-value=63 Score=33.99 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
++++|+|||..|+ ||. .+++||. ..|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~-~aa~~L~-~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCE-KASAWMK-HEGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHH-HHHHHHH-HcCCC
Confidence 5689999999995 874 4555654 44653
No 82
>PHA02540 61 DNA primase; Provisional
Probab=34.37 E-value=65 Score=34.37 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=31.8
Q ss_pred CeEEEEc-CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcC
Q 009161 202 GRVFVHC-CQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (541)
Q Consensus 202 g~VLVHC-~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp 243 (541)
+....|| .+|.+.. ++.|||...++++.||++.+.+...
T Consensus 52 ~~~~yhCFgCGa~Gd---~i~Flme~e~lsf~Eav~~la~~~g 91 (337)
T PHA02540 52 DGGVFKCHNCGYHRP---FGNFLKDYEPDLYREYIMERFKERG 91 (337)
T ss_pred CceEEEecCCCCCCC---HHHHHHHhcCCChHHHHHHHHHHhC
Confidence 3688999 5677765 7899999999999999997766543
No 83
>PRK05320 rhodanese superfamily protein; Provisional
Probab=32.68 E-value=65 Score=32.87 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=19.2
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
++++|+++|..|+ ||.. ++++|. ..|.
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~-~~Gf 200 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQ-EVGI 200 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHH-HcCC
Confidence 5789999999995 7744 556664 3454
No 84
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=32.27 E-value=46 Score=31.22 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcC
Q 009161 188 YDVFDYFEDVREQGGRVFVHCC 209 (541)
Q Consensus 188 ~~av~fI~~~~~~gg~VLVHC~ 209 (541)
..++.+++++...|.+|||+|.
T Consensus 16 ~~~c~L~~k~~~~G~rvlI~~~ 37 (144)
T COG2927 16 AAACRLAEKAWRSGWRVLIQCE 37 (144)
T ss_pred HHHHHHHHHHHHcCCeEEEEeC
Confidence 3789999999999999999995
No 85
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=31.74 E-value=61 Score=27.00 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=17.9
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
++.+|+|+|..|. ||.. ++.+| ...|.
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L-~~~G~ 81 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWL-AQMGW 81 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHH-HHcCC
Confidence 4678999999985 7643 33333 55565
No 86
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=30.74 E-value=64 Score=29.86 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCC
Q 009161 186 ILYDVFDYFEDVREQGGRVFVHCCQ 210 (541)
Q Consensus 186 ~l~~av~fI~~~~~~gg~VLVHC~a 210 (541)
.+.-++..++++.++|.+|+|+|..
T Consensus 14 ~~~~~c~L~~ka~~~g~rv~I~~~d 38 (142)
T PRK05728 14 LEALLCELAEKALRAGWRVLVQCED 38 (142)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4667899999999999999999953
No 87
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=28.83 E-value=63 Score=27.87 Aligned_cols=37 Identities=27% Similarity=0.513 Sum_probs=25.4
Q ss_pred EEEcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHcC
Q 009161 205 FVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARG 243 (541)
Q Consensus 205 LVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~Rp 243 (541)
..||.+ -+..+- ++.++|...++++.+|++++...=.
T Consensus 54 ~~~Cf~-Cg~~Gd-~i~~v~~~~~~~f~eAv~~l~~~~~ 90 (97)
T PF01807_consen 54 RFKCFG-CGKGGD-VIDFVMKYEGCSFKEAVKWLAEEFG 90 (97)
T ss_dssp EEEETT-T--EE--HHHHHHHHHT--HHHHHHHHHHHHT
T ss_pred eEEECC-CCCCCc-HHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 688874 455554 5888899999999999999987543
No 88
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=28.31 E-value=67 Score=26.76 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=18.6
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
..+.+|+|+|..| .||+. ++.+| +..|.
T Consensus 54 ~~~~~ivv~c~~g-~~s~~-~~~~l-~~~G~ 81 (96)
T cd01529 54 GRATRYVLTCDGS-LLARF-AAQEL-LALGG 81 (96)
T ss_pred CCCCCEEEEeCCh-HHHHH-HHHHH-HHcCC
Confidence 4568999999877 57744 34444 45564
No 89
>PRK13938 phosphoheptose isomerase; Provisional
Probab=28.28 E-value=1.4e+02 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=31.2
Q ss_pred CchHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHHHHHHHHH
Q 009161 181 EDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYLM 224 (541)
Q Consensus 181 ~~l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSatvviAYLM 224 (541)
..+.+.+.++.+.+.+++++|++|+|. |+|+|+.++...-+
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~ 65 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAA 65 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHH
Confidence 345566888888888899999999986 88888776655443
No 90
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=28.01 E-value=65 Score=26.81 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=19.1
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
+..+.+|+|+|..| .||.. ++.++...|.
T Consensus 58 ~~~~~~ivv~c~~g-~~s~~--~~~~l~~~G~ 86 (103)
T cd01447 58 FAEDKPFVFYCASG-WRSAL--AGKTLQDMGL 86 (103)
T ss_pred CCCCCeEEEEcCCC-CcHHH--HHHHHHHcCh
Confidence 35678999999988 47643 3445555553
No 91
>KOG0235 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=27.89 E-value=2.3e+02 Score=28.29 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred CCCchHHHHHHHHHHHHHHH----hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHHHH
Q 009161 179 PSEDITSILYDVFDYFEDVR----EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQ 236 (541)
Q Consensus 179 ~~~~l~~~l~~av~fI~~~~----~~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eAl~ 236 (541)
.++.+...+..+..|.++.+ .+|+.|+|+|++.. .=|++|+..|.+.++...
T Consensus 130 ~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGns------LR~i~~~l~g~s~~~i~~ 185 (214)
T KOG0235|consen 130 DGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNS------LRAIVKHLEGISDEAIKE 185 (214)
T ss_pred CCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHH------HHHHHHHHhcCCHhhhhh
Confidence 34556667788888887654 46899999998733 334666777887655443
No 92
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=26.53 E-value=1.4e+02 Score=29.47 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=34.6
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHH
Q 009161 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDA 234 (541)
Q Consensus 179 ~~~~l~~~l~~av~fI~~~~~----~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eA 234 (541)
..+.+.+....+..++++.+. .+++|||-|++|+-|+ +++|++ |+++++.
T Consensus 148 gGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~vir~---ll~~~~---~~~~~~~ 201 (228)
T PRK14116 148 GGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNSLRA---LTKYIE---NISDEDI 201 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHH---HHHHHh---CCCHHHH
Confidence 346676777888888877542 4689999999998775 334433 6776643
No 93
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=26.33 E-value=71 Score=29.34 Aligned_cols=23 Identities=30% Similarity=0.272 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcC
Q 009161 187 LYDVFDYFEDVREQGGRVFVHCC 209 (541)
Q Consensus 187 l~~av~fI~~~~~~gg~VLVHC~ 209 (541)
..-++..++++.++|.+|+|+|.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~ 37 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCP 37 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-S
T ss_pred HHHHHHHHHHHHHcCCeEEEEeC
Confidence 46688999999999999999995
No 94
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=25.81 E-value=95 Score=25.79 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=18.1
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
+..+|+|+|..|...++..++..| ...|.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L-~~~G~ 77 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRL-SELGY 77 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHH-HHcCc
Confidence 367999999998643344444444 44454
No 95
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=25.37 E-value=89 Score=29.54 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcCC
Q 009161 186 ILYDVFDYFEDVREQGGRVFVHCCQ 210 (541)
Q Consensus 186 ~l~~av~fI~~~~~~gg~VLVHC~a 210 (541)
.+.-+++.++++..+|.+|+|+|..
T Consensus 14 ~~~~acrL~~Ka~~~G~rv~I~~~d 38 (154)
T PRK06646 14 LLKSILLLIEKCYYSDLKSVILTAD 38 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4667899999999999999999954
No 96
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=25.20 E-value=93 Score=26.12 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=19.5
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQS 230 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~S 230 (541)
.++.+|+|+|..|. ||.. ++.++...|..
T Consensus 64 ~~~~~ivv~c~~g~-~s~~--~~~~l~~~G~~ 92 (106)
T cd01519 64 SKDKELIFYCKAGV-RSKA--AAELARSLGYE 92 (106)
T ss_pred CCCCeEEEECCCcH-HHHH--HHHHHHHcCCc
Confidence 35689999999986 6533 34555566653
No 97
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=24.99 E-value=95 Score=26.06 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 201 GGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 201 gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
+..|+|+|..|. ||..+ |..+...|.
T Consensus 65 ~~~vv~~c~~g~-~s~~~--a~~L~~~G~ 90 (105)
T cd01525 65 GKIIVIVSHSHK-HAALF--AAFLVKCGV 90 (105)
T ss_pred CCeEEEEeCCCc-cHHHH--HHHHHHcCC
Confidence 678999999986 66443 333444454
No 98
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=24.58 E-value=87 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=18.8
Q ss_pred hcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 199 EQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 199 ~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
..+++|+|+|..|. ||...+ ..+...|.
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa--~~L~~~G~ 97 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV--RKLKELGL 97 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH--HHHHHcCC
Confidence 45789999999995 875332 23445565
No 99
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.50 E-value=63 Score=27.81 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=11.7
Q ss_pred CCeEEEEcCCCCc
Q 009161 201 GGRVFVHCCQGVS 213 (541)
Q Consensus 201 gg~VLVHC~aGvs 213 (541)
..+|||-|.+|++
T Consensus 3 ~~~ILl~C~~G~s 15 (95)
T TIGR00853 3 ETNILLLCAAGMS 15 (95)
T ss_pred ccEEEEECCCchh
Confidence 3689999999998
No 100
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=23.99 E-value=55 Score=29.56 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHc
Q 009161 210 QGVSRSTSLVIAYLMWREGQSFEDAFQYVKAAR 242 (541)
Q Consensus 210 aGvsRSatvviAYLM~~~g~Sl~eAl~~Vr~~R 242 (541)
.|++|+.|.+++||+.....+-. -++.+...|
T Consensus 23 lgi~R~vA~tlv~L~~~~E~sS~-~IE~~sgLR 54 (124)
T COG4738 23 LGIPRNVATTLVCLAKGDEASSR-EIERVSGLR 54 (124)
T ss_pred cCCCchHHHHHHHHhcCcchhhh-hhHHhhcCC
Confidence 58999999999999987555433 345555544
No 101
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=23.89 E-value=1.1e+02 Score=29.59 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchhHH
Q 009161 183 ITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTS 217 (541)
Q Consensus 183 l~~~l~~av~fI~~~~~~gg~VLVHC~aGvsRSat 217 (541)
+...+.++.+.|-++...|++||++ |.|+|++
T Consensus 23 l~~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 23 LIEAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 3455677777888888999999986 6666754
No 102
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=23.40 E-value=41 Score=29.33 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=9.3
Q ss_pred CCeEEEEcCCC
Q 009161 201 GGRVFVHCCQG 211 (541)
Q Consensus 201 gg~VLVHC~aG 211 (541)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36999999877
No 103
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=23.33 E-value=80 Score=26.33 Aligned_cols=14 Identities=21% Similarity=0.543 Sum_probs=12.0
Q ss_pred CeEEEEcCCCCchh
Q 009161 202 GRVFVHCCQGVSRS 215 (541)
Q Consensus 202 g~VLVHC~aGvsRS 215 (541)
++|+|.|.+|+|=|
T Consensus 1 ~kilvvCg~G~gtS 14 (87)
T cd05567 1 KKIVFACDAGMGSS 14 (87)
T ss_pred CEEEEECCCCccHH
Confidence 47999999999865
No 104
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.08 E-value=1.7e+02 Score=25.33 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=17.3
Q ss_pred cCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 200 QGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
.+.+|+|+|..|. ||... +. ++...|.
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~-~L~~~G~ 83 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KD-ILLDMGY 83 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HH-HHHHcCC
Confidence 4578999999995 76544 33 3334454
No 105
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=23.03 E-value=1.7e+02 Score=28.91 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=33.8
Q ss_pred CCCchHHHHHHHHHHHHHHHh----cCCeEEEEcCCCCchhHHHHHHHHHHhcCCCHHHH
Q 009161 179 PSEDITSILYDVFDYFEDVRE----QGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDA 234 (541)
Q Consensus 179 ~~~~l~~~l~~av~fI~~~~~----~gg~VLVHC~aGvsRSatvviAYLM~~~g~Sl~eA 234 (541)
..+.+.+....+.+++++.+. .+++|||-|++|+-|+ ++++++ |+++++.
T Consensus 147 ~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~---ll~~~l---~~~~~~~ 200 (227)
T PRK14118 147 DAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRA---LAKHIE---GISDADI 200 (227)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHH---HHHHHh---CCCHHHH
Confidence 346666777888888877543 4679999999998765 333333 6666654
No 106
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=22.99 E-value=1.1e+02 Score=31.60 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=16.4
Q ss_pred hcCC---eEEEEcCCCCchhHHHH
Q 009161 199 EQGG---RVFVHCCQGVSRSTSLV 219 (541)
Q Consensus 199 ~~gg---~VLVHC~aGvsRSatvv 219 (541)
++|+ .|-|=|++|..||++++
T Consensus 238 ~egks~lTIaIGCTGGqHRSV~ia 261 (286)
T COG1660 238 KEGKSYLTIAIGCTGGQHRSVYIA 261 (286)
T ss_pred hcCCeEEEEEEccCCCccchHHHH
Confidence 4555 46678999999999876
No 107
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.85 E-value=76 Score=32.52 Aligned_cols=26 Identities=35% Similarity=0.482 Sum_probs=20.6
Q ss_pred CCCchhHHHHHHHHHHhcCCCHHHHHHH
Q 009161 210 QGVSRSTSLVIAYLMWREGQSFEDAFQY 237 (541)
Q Consensus 210 aGvsRSatvviAYLM~~~g~Sl~eAl~~ 237 (541)
=|+|||++.+.|-++ .|++.++|.++
T Consensus 160 PGiSRSG~Ti~~~l~--~G~~r~~A~~f 185 (259)
T PF02673_consen 160 PGISRSGATITAGLL--LGLDREEAARF 185 (259)
T ss_pred CCcChHHHHHHHHHH--CCCCHHHHHHH
Confidence 499999988888765 48888888665
No 108
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=22.37 E-value=1.7e+02 Score=25.49 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=13.2
Q ss_pred cCCeEEEEcCCCCchhHHH
Q 009161 200 QGGRVFVHCCQGVSRSTSL 218 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatv 218 (541)
++.+|+|+|..| .||...
T Consensus 59 ~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH
Confidence 457899999988 466444
No 109
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.87 E-value=1.4e+02 Score=32.33 Aligned_cols=14 Identities=29% Similarity=0.686 Sum_probs=11.4
Q ss_pred HhcCCeEEEEcCCC
Q 009161 198 REQGGRVFVHCCQG 211 (541)
Q Consensus 198 ~~~gg~VLVHC~aG 211 (541)
+..|..||.||.+|
T Consensus 164 I~dg~~ILThcnsg 177 (363)
T PRK05772 164 LNDGDTVLTQCNAG 177 (363)
T ss_pred cCCCCEEEEecCCc
Confidence 34678999999887
No 110
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=21.76 E-value=77 Score=32.85 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=19.8
Q ss_pred CCchhHHHHHHHHHHhcCCCHHHHHHH
Q 009161 211 GVSRSTSLVIAYLMWREGQSFEDAFQY 237 (541)
Q Consensus 211 GvsRSatvviAYLM~~~g~Sl~eAl~~ 237 (541)
|+|||++.++|-|+. |++-++|.++
T Consensus 167 GiSRSG~TI~a~l~~--G~~r~~Aa~f 191 (276)
T PRK12554 167 GVSRSGATIIAGLLL--GLTREAAARF 191 (276)
T ss_pred CCCCchHHHHHHHHc--CCCHHHHHHH
Confidence 999998888776653 8888887654
No 111
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=21.09 E-value=82 Score=32.27 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=19.4
Q ss_pred CCchhHHHHHHHHHHhcCCCHHHHHHH
Q 009161 211 GVSRSTSLVIAYLMWREGQSFEDAFQY 237 (541)
Q Consensus 211 GvsRSatvviAYLM~~~g~Sl~eAl~~ 237 (541)
|+|||++.+.|-|+ .|++-++|.++
T Consensus 161 GiSRSG~TI~a~l~--~G~~r~~Aa~f 185 (255)
T TIGR00753 161 GVSRSGSTISGGLF--IGLNRKAAAEF 185 (255)
T ss_pred CCCCchHHHHHHHH--cCCCHHHHHHH
Confidence 99999888877665 38888887654
No 112
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=20.90 E-value=2.1e+02 Score=24.68 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=13.9
Q ss_pred cCCeEEEEcCCCCchhHHH
Q 009161 200 QGGRVFVHCCQGVSRSTSL 218 (541)
Q Consensus 200 ~gg~VLVHC~aGvsRSatv 218 (541)
...+|+|||..|-.||+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3478999999865677543
No 113
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=20.57 E-value=1.7e+02 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=18.3
Q ss_pred HhcCCeEEEEcCCCCchhHHHHHHHHHHhcCC
Q 009161 198 REQGGRVFVHCCQGVSRSTSLVIAYLMWREGQ 229 (541)
Q Consensus 198 ~~~gg~VLVHC~aGvsRSatvviAYLM~~~g~ 229 (541)
...+.+|+|+|..|. ||.. ++.+++..|.
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~--a~~~l~~~G~ 81 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ--LAQALREAGF 81 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH--HHHHHHHcCC
Confidence 356789999999764 5433 3444455554
Done!