BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009162
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 308 bits (789), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/385 (41%), Positives = 227/385 (58%), Gaps = 11/385 (2%)
Query: 128 PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY 187
P YDW Y +L L CGLK++A+++FHQCG GD ++P+PQW+L+ DK+PD+ Y
Sbjct: 65 PKQYDWSAYRELFQLVKKCGLKIQAIMSFHQCGGNVGDAVFIPIPQWILQIGDKNPDIFY 124
Query: 188 SDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITGVQVGMGP 246
++R G RN EY+SLG D + +GR+ ++ Y DFM +FRD L A I ++VG G
Sbjct: 125 TNRAGNRNQEYLSLGVDNQRLFQGRTALEMYRDFMESFRDNMADFLKAGDIVDIEVGCGA 184
Query: 247 AGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNL 306
AGELRYPS P + W +GEFQCYDKYM+A ++ G +W G GA
Sbjct: 185 AGELRYPSYPETQ---GWVFPGIGEFQCYDKYMVADWKEAVKQAGNADWEMPGK-GAGTY 240
Query: 307 MQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVG 366
P+ TEFFR NG + T G FFL WYS L++HG+++ EA +F G RVN +AKV
Sbjct: 241 NDTPDKTEFFRP-NGTYKTDMGKFFLTWYSNKLIIHGDQVLEEANKVFVGLRVNIAAKVS 299
Query: 367 GIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPF 426
GIHW Y SH +ELTAG+YN + RDG+ PIAR+ R+ TL +C EMRD E+
Sbjct: 300 GIHWWYNHVSHAAELTAGFYNVAGRDGYRPIARMLARHHATLNFTCLEMRD-SEQPAEAK 358
Query: 427 SSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSF 482
S+P+ ++Q+L + I + GEN+ D A+ Q++ + L P
Sbjct: 359 SAPQELVQQVLSSGWKEYIDVAGENALPRYDATAYNQMLLKLRPNGVNLNGPPKLKMSGL 418
Query: 483 NFLRMDKNMFEYHNWVRFTRFVRQL 507
+LR+ ++ + N+ F +FV+++
Sbjct: 419 TYLRLSDDLLQTDNFELFKKFVKKM 443
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase
Length = 500
Score = 300 bits (767), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/438 (36%), Positives = 236/438 (53%), Gaps = 12/438 (2%)
Query: 78 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYF 137
V+V LP D+ + + ++ + + L P YDW Y
Sbjct: 8 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYK 67
Query: 138 DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNME 197
L L GLK++A+++FHQCG GD +P+PQWV + +DPD+ Y+D G RN+E
Sbjct: 68 QLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIE 127
Query: 198 YISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITGVQVGMGPAGELRYPSLP 256
Y++LG D P+ GRS +Q Y D+M +FR+ + L A +I ++VG+GPAGELRYPS P
Sbjct: 128 YLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKDFLDAGVIVDIEVGLGPAGELRYPSYP 187
Query: 257 SQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFF 316
W +GEF CYDKY+ A A A +G EW P A PE T+FF
Sbjct: 188 QSH---GWSFPGIGEFICYDKYLQADFKAAAAAVGHPEW--EFPNDAGQYNDTPERTQFF 242
Query: 317 RTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPS 376
R DNG + + G FFL WYS L+ HG+RI EA +F G +V + K+ G+HW Y PS
Sbjct: 243 R-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKIAGVHWWYKVPS 301
Query: 377 HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQL 436
H +ELTAGYYN RDG+ IAR+ R+ ++ +C EMRD E+ + S+PE ++Q+
Sbjct: 302 HAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD-SEQPPDAMSAPEELVQQV 360
Query: 437 LLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMF 492
L A + + EN+ D A+ +++ ++ + P F F +LR+ +
Sbjct: 361 LSAGWREGLNVSCENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 420
Query: 493 EYHNWVRFTRFVRQLSGS 510
E N+V F FV ++ +
Sbjct: 421 EGQNYVNFKTFVDRMHAN 438
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Acarbose
pdb|2XFR|A Chain A, Crystal Structure Of Barley Beta-Amylase At Atomic
Resolution
pdb|2XFY|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
Alpha-Cyclodextrin
pdb|2XG9|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
4-O- Alpha-D-Glucopyranosylmoranoline
pdb|2XGB|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
2,3- Epoxypropyl-Alpha-D-Glucopyranoside
pdb|2XGI|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With
3,4- Epoxybutyl Alpha-D-Glucopyranoside
Length = 535
Score = 299 bits (765), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 162/438 (36%), Positives = 238/438 (54%), Gaps = 12/438 (2%)
Query: 78 VFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDWRGYF 137
V+V LP D+ + + ++ + + L P YDW Y
Sbjct: 12 VYVMLPLDAVSVNNRFEKGDELRAQLRKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYK 71
Query: 138 DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNME 197
L L GLK++A+++FHQCG GD +P+PQWV + +DPD+ Y+D G RN+E
Sbjct: 72 QLFELVQKAGLKLQAIMSFHQCGGNVGDAVNIPIPQWVRDVGTRDPDIFYTDGHGTRNIE 131
Query: 198 YISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA-IITGVQVGMGPAGELRYPSLP 256
Y++LG D P+ GRS +Q Y D+M +FR+ + L A +I ++VG+GPAGE+RYPS P
Sbjct: 132 YLTLGVDNQPLFHGRSAVQMYADYMTSFRENMKEFLDAGVIVDIEVGLGPAGEMRYPSYP 191
Query: 257 SQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFF 316
Q WS+ +GEF CYDKY+ A A A +G EW +G N PE T+FF
Sbjct: 192 -QSHGWSFPG--IGEFICYDKYLQADFKAAAAAVGHPEWEFPNDVGQYN--DTPERTQFF 246
Query: 317 RTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPS 376
R DNG + + G FFL WYS L+ HG+RI EA +F G +V + K+ GIHW Y PS
Sbjct: 247 R-DNGTYLSEKGRFFLAWYSNNLIKHGDRILDEANKVFLGYKVQLAIKISGIHWWYKVPS 305
Query: 377 HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQL 436
H +ELTAGYYN RDG+ IAR+ R+ ++ +C EMRD E+ S+PE ++Q+
Sbjct: 306 HAAELTAGYYNLHDRDGYRTIARMLKRHRASINFTCAEMRD-SEQSSQAMSAPEELVQQV 364
Query: 437 LLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLEKPS----FSFNFLRMDKNMF 492
L A + + EN+ D A+ +++ ++ + P F F +LR+ +
Sbjct: 365 LSAGWREGLNVACENALPRYDPTAYNTILRNARPHGINQSGPPEHKLFGFTYLRLSNQLV 424
Query: 493 EYHNWVRFTRFVRQLSGS 510
E N+ F FV ++ +
Sbjct: 425 EGQNYANFKTFVDRMHAN 442
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGXKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L SC EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFSCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase
Determined At 3.0 Angstroms Resolution: Preliminary
Chain Tracing Of The Complex With Alpha-Cyclodextrin
Length = 491
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 6 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 65
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 66 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 125
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 126 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 185
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 186 PSYPQSQ---GWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 240
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 241 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 299
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 300 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 358
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I +K + G K S F +LR+
Sbjct: 359 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLS 418
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 419 DDLLQKSNFNIFKKFVLKMHADQDYCAN 446
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYB|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYC|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
pdb|1BYD|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With
Beta-Maltose And Maltal: Active Site Components And
Their Apparent Role In Catalysis
Length = 495
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPRIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I +K + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAKPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t)
With Increased Ph Optimum
Length = 495
Score = 292 bits (747), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILTFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With
Maltose
pdb|1WDP|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
pdb|1BFN|A Chain A, Beta-AmylaseBETA-Cyclodextrin Complex
Length = 495
Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t)
With Increased Ph Optimum
Length = 495
Score = 291 bits (745), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVTVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta- Amylase
Length = 495
Score = 291 bits (745), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFACLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean
Length = 495
Score = 290 bits (743), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVRWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLFQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAG+LRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGQLRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction
Of Soybean Beta-Amylase
Length = 495
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/448 (35%), Positives = 238/448 (53%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + G+N+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGQNALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of
Soybean Beta-Amylase
Length = 495
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFVCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 5.4
pdb|1Q6F|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y)
With Increased Ph Optimum At Ph 7.1
Length = 495
Score = 290 bits (742), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I + VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIYVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L +I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKP|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 166/462 (35%), Positives = 242/462 (52%), Gaps = 13/462 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK-LDFRGDIRPSSAS 529
++ + N+ F +FV ++ + A + I P S S
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCANPQKYNHAITPLSPS 464
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|B Chain B, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|C Chain C, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
pdb|1UKO|D Chain D, Crystal Structure Of Soybean Beta-Amylase Mutant
Substituted At Surface Region
Length = 495
Score = 290 bits (741), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/448 (36%), Positives = 237/448 (52%), Gaps = 12/448 (2%)
Query: 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALXXXXXXXXXXXXXXXXXXRDRPGVYDW 133
N PV+V LP + + + + L P YDW
Sbjct: 10 NYVPVYVMLPLGVVNVDNVFEDPDGLKEQLLQLRAAGVDGVMVDVWWGIIELKGPKQYDW 69
Query: 134 RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR 193
R Y L+ L CGL ++A+++FHQCG GD +P+PQWVL+ + + D+ Y++R G
Sbjct: 70 RAYRSLLQLVQECGLTLQAIMSFHQCGGNVGDIVNIPIPQWVLDIGESNHDIFYTNRSGT 129
Query: 194 RNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL-GAIITGVQVGMGPAGELRY 252
RN EY+++G D P+ GR+ I+ Y+D+M++FR+ L +I ++VG+GPAGELRY
Sbjct: 130 RNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRY 189
Query: 253 PSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEH 312
PS P + W +GEFQCYDKY+ A A G EW G N + PE
Sbjct: 190 PSYPQSQ---GWEFPGIGEFQCYDKYLKADFKAAVARAGHPEWELPDDAGKYNDV--PES 244
Query: 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHY 372
T FF++ NG + T G FFL WYS LL HG++I EA F G +V + KV GIHW Y
Sbjct: 245 TGFFKS-NGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWY 303
Query: 373 GTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGF 432
+H +ELTAGYYN + RDG+ PIAR+ R+ L +C EMRD E+ + S P+
Sbjct: 304 KVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRD-SEQPSDAKSGPQEL 362
Query: 433 LRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK---FYSEGLEKPS-FSFNFLRMD 488
++Q+L I + GEN+ D A+ Q+I ++ + G K S F +LR+
Sbjct: 363 VQQVLSGGWREYIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTYLRLS 422
Query: 489 KNMFEYHNWVRFTRFVRQLSGSSIFRAK 516
++ + N+ F +FV ++ + A
Sbjct: 423 DDLLQKSNFNIFKKFVLKMHADQDYCAN 450
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 43/342 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKL 260
D++ G + YT F M+ ++D +I +++ GPAGELRYPS +
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKD--------VIAKIELSGGPAGELRYPSYTTSDG 183
Query: 261 MWSWRSRELGEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHT 313
+ SR G+FQ Y K+ L LN E+ + WG + + + P
Sbjct: 184 T-GYPSR--GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDG 237
Query: 314 EFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHY 372
E F + L + YG +LEWY G+L H + I A F T +V AK+ G+HW Y
Sbjct: 238 EQFLMNGYL--SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 373 GTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPE 430
P+ H +E AGY + + + F + +C EM D+ +S P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPK 347
Query: 431 GFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 472
++ + A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 43/342 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKL 260
D++ G + YT F M+ ++D +I +++ GPAGELRYPS +
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKD--------VIAKIELSGGPAGELRYPSYTTSDG 183
Query: 261 MWSWRSRELGEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHT 313
+ SR G+FQ Y K+ L LN E+ + WG + + + P
Sbjct: 184 T-GYPSR--GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDG 237
Query: 314 EFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHY 372
E F + L + YG +LEWY G+L H + I A F T +V AK+ G+HW Y
Sbjct: 238 EQFLMNGYL--SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 373 GTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPE 430
P+ H +E AGY + + + F + +C EM D+ +S P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVNFTCLEM--TDKGSYPEYSMPK 347
Query: 431 GFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 472
++ + A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 43/342 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKL 260
D++ G + YT F M+ ++D +I + + GPAGELRYPS +
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKD--------VIAKIYLSGGPAGELRYPSYTTSDG 183
Query: 261 MWSWRSRELGEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHT 313
+ SR G+FQ Y K+ L LN E+ + WG + + + P
Sbjct: 184 T-GYPSR--GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDG 237
Query: 314 EFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHY 372
E F + L + YG +LEWY G+L H + I A F T +V AK+ G+HW Y
Sbjct: 238 EQFLMNGYL--SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 373 GTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPE 430
P+ H +E AGY + + + F + +C EM D+ +S P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPK 347
Query: 431 GFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 472
++ + A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 108 bits (270), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 43/342 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKL 260
D++ G + YT F M+ ++D +I + + GPAGELRYPS +
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKD--------VIAKIFLSGGPAGELRYPSYTTSDG 183
Query: 261 MWSWRSRELGEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHT 313
+ SR G+FQ Y K+ L LN E+ + WG + + + P
Sbjct: 184 T-GYPSR--GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDG 237
Query: 314 EFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHY 372
E F + L + YG +LEWY G+L H + I A F T +V AK+ G+HW Y
Sbjct: 238 EQFLMNGYL--SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 373 GTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPE 430
P+ H +E AGY + + + F + +C EM D+ +S P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPK 347
Query: 431 GFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 472
++ + A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 155/342 (45%), Gaps = 43/342 (12%)
Query: 145 NCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYIS-LGC 203
N G+K+ +++ HQCG GD VP+P WV + D L + G N E ++ L
Sbjct: 77 NAGMKMIPIISTHQCGGNVGDDCNVPIPSWVWNQ-KSDDSLYFKSETGTVNKETLNPLAS 135
Query: 204 DILPVLRGRSPIQAYTDF---MRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKL 260
D++ G + YT F M+ ++D +I + + GPAG LRYPS +
Sbjct: 136 DVIRKEYG----ELYTAFAAAMKPYKD--------VIAKIYLSGGPAGALRYPSYTTSDG 183
Query: 261 MWSWRSRELGEFQCY-----DKYMLASLN--ACAREIGMREWGDGGPIGASNLMQDPEHT 313
+ SR G+FQ Y K+ L LN E+ + WG + + + P
Sbjct: 184 T-GYPSR--GKFQAYTEFAKSKFRLWVLNKYGSLNEVN-KAWGT--KLISELAILPPSDG 237
Query: 314 EFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHY 372
E F + L + YG +LEWY G+L H + I A F T +V AK+ G+HW Y
Sbjct: 238 EQFLMNGYL--SMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQY 295
Query: 373 GTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPE 430
P+ H +E AGY + + + F + +C EM D+ +S P+
Sbjct: 296 NNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEM--TDKGSYPEYSMPK 347
Query: 431 GFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYS 472
++ + A I L GEN+ + ++ +++V +M+ Y+
Sbjct: 348 TLVQNIATLANEKGIVLNGENALSIGNEEEYKRVAEMAFNYN 389
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 164/381 (43%), Gaps = 66/381 (17%)
Query: 131 YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDR 190
+DW Y GLK +++ H+CG GD +PLP W+ + D ++ + D
Sbjct: 55 FDWSYYKTYANAVKEAGLKWVPIISTHKCGGNVGDDCNIPLPSWLSSKGSAD-EMQFKDE 113
Query: 191 FGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITGVQVGMGPAGEL 250
G N E +S P+ G + Y + +F + F +II + + GP+GEL
Sbjct: 114 SGYANSEALS------PLWSGTG--KQYDELYASFAENFAGYK-SIIPKIYLSGGPSGEL 164
Query: 251 RYPS-LPSQKLMWSWRSRELGEFQCY-------------DKY-MLASLNACAREIGMREW 295
RYPS P+ WS+ R G+FQ Y DKY L +NA W
Sbjct: 165 RYPSYYPAAG--WSYPGR--GKFQAYTETAKNAFRTAMNDKYGSLDKINAA--------W 212
Query: 296 GDGGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLH----GERICREAE 351
G + + + + P + F T NG +N+AYG FL WY +L H G + +
Sbjct: 213 GT--KLTSLSQINPPTDGDGFYT-NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFD 269
Query: 352 TIFRGTRVNTSAKVGGIHWHYGTPS--HPSELTAGYYNTSTRDGFLPIARIFGRYGFTLC 409
++F G R+ AK+ G+HW P+ H +E GYY+ + + + F L
Sbjct: 270 SVF-GVRI--GAKISGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLT 320
Query: 410 CSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQV-IKMS 468
+C EM D +S P + + A + L GEN A + FQ++ K++
Sbjct: 321 FTCLEMSDSGTAPN--YSLPSTLVDTVSSIANAKGVRLNGEN-ALPTGGSGFQKIEEKIT 377
Query: 469 KFYSEGLEKPSFSFNFLRMDK 489
KF G F LR++
Sbjct: 378 KFGYHG-------FTLLRINN 391
>pdb|1VGP|A Chain A, Crystal Structure Of An Isozyme Of Citrate Synthase From
Sulfolbus Tokodaii Strain7
Length = 373
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 176 LEEIDKDPDLAYSDRF-----GRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230
L+ I+ DP L++S+ F G R E S D+ +L + A T TF
Sbjct: 138 LDIIEPDPKLSHSENFLYMLYGDRPNEIKSKAMDVTLILHIDHEMNASTFASLVVASTFS 197
Query: 231 PLLGAIITGVQVGMGPA-GELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACARE 289
L +I+ G+ GP G Y +L K E+G + + Y+L L+ R
Sbjct: 198 DLYSSIVAGISALKGPLHGGANYEALKMFK--------EIGSPEKVNDYILNRLSNKQRI 249
Query: 290 IG 291
+G
Sbjct: 250 MG 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,137,852
Number of Sequences: 62578
Number of extensions: 673745
Number of successful extensions: 1708
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1597
Number of HSP's gapped (non-prelim): 24
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)