Query 009162
Match_columns 541
No_of_seqs 144 out of 204
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 21:10:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02803 beta-amylase 100.0 1E-193 2E-198 1522.5 49.9 506 4-522 13-527 (548)
2 PLN00197 beta-amylase; Provisi 100.0 2E-193 5E-198 1523.2 49.5 492 29-523 30-554 (573)
3 PLN02801 beta-amylase 100.0 1E-187 3E-192 1470.5 46.4 439 70-515 10-453 (517)
4 PLN02161 beta-amylase 100.0 3E-187 6E-192 1467.2 48.6 435 70-510 86-530 (531)
5 PLN02905 beta-amylase 100.0 3E-186 6E-191 1480.4 45.6 433 71-510 260-695 (702)
6 PLN02705 beta-amylase 100.0 1E-184 2E-189 1465.3 47.3 433 71-511 242-676 (681)
7 PF01373 Glyco_hydro_14: Glyco 100.0 3E-165 7E-170 1279.2 30.6 393 79-503 1-402 (402)
8 PF02449 Glyco_hydro_42: Beta- 99.8 5.3E-21 1.1E-25 197.1 12.6 215 95-368 8-238 (374)
9 COG1874 LacA Beta-galactosidas 99.6 6.6E-14 1.4E-18 155.8 17.9 203 95-354 28-249 (673)
10 PF01301 Glyco_hydro_35: Glyco 98.7 3.4E-08 7.4E-13 101.8 8.9 76 95-177 22-102 (319)
11 PLN03059 beta-galactosidase; P 98.4 3.5E-06 7.6E-11 96.6 14.0 106 94-233 56-165 (840)
12 TIGR03356 BGL beta-galactosida 98.0 2.3E-05 5E-10 84.0 9.0 111 92-242 49-164 (427)
13 smart00633 Glyco_10 Glycosyl h 97.8 0.0013 2.8E-08 65.5 17.1 192 120-417 3-194 (254)
14 PF00232 Glyco_hydro_1: Glycos 97.6 0.00013 2.8E-09 78.5 6.8 109 93-241 54-168 (455)
15 PF00150 Cellulase: Cellulase 97.5 0.00039 8.4E-09 67.3 8.3 59 98-158 22-84 (281)
16 KOG0496 Beta-galactosidase [Ca 97.3 0.0016 3.5E-08 73.3 11.5 84 94-189 46-135 (649)
17 PRK15014 6-phospho-beta-glucos 97.3 0.0012 2.6E-08 72.3 9.9 113 92-243 64-182 (477)
18 PRK09852 cryptic 6-phospho-bet 97.3 0.0011 2.4E-08 72.4 9.7 112 92-242 66-183 (474)
19 PRK13511 6-phospho-beta-galact 97.0 0.0023 5E-08 69.7 8.3 111 92-243 49-164 (469)
20 COG3693 XynA Beta-1,4-xylanase 97.0 0.0053 1.2E-07 64.6 10.5 200 113-421 59-265 (345)
21 PLN02814 beta-glucosidase 96.9 0.0036 7.7E-08 69.1 9.4 112 92-242 72-188 (504)
22 PRK09589 celA 6-phospho-beta-g 96.9 0.0038 8.3E-08 68.3 9.6 112 92-242 62-179 (476)
23 PLN02998 beta-glucosidase 96.9 0.0034 7.4E-08 69.1 8.9 112 92-242 77-193 (497)
24 TIGR01233 lacG 6-phospho-beta- 96.8 0.0048 1E-07 67.4 9.4 111 91-242 47-162 (467)
25 PLN02849 beta-glucosidase 96.8 0.0045 9.7E-08 68.3 9.2 112 92-242 74-190 (503)
26 PRK09593 arb 6-phospho-beta-gl 96.6 0.0088 1.9E-07 65.5 9.3 113 92-243 68-186 (478)
27 COG2723 BglB Beta-glucosidase/ 96.5 0.027 6E-07 61.8 12.5 148 91-289 53-206 (460)
28 PF00331 Glyco_hydro_10: Glyco 95.8 0.1 2.2E-06 54.3 11.9 210 102-421 26-249 (320)
29 PF02638 DUF187: Glycosyl hydr 95.8 0.17 3.6E-06 52.7 13.3 230 93-411 15-258 (311)
30 PF14871 GHL6: Hypothetical gl 95.3 0.29 6.2E-06 45.3 11.8 110 101-233 4-123 (132)
31 PF01229 Glyco_hydro_39: Glyco 92.5 0.37 8.1E-06 52.7 7.8 102 96-234 38-150 (486)
32 cd03465 URO-D_like The URO-D _ 91.5 1.2 2.7E-05 45.2 9.7 79 100-191 171-252 (330)
33 PF07745 Glyco_hydro_53: Glyco 90.9 0.44 9.5E-06 50.5 5.9 53 101-158 28-80 (332)
34 KOG0626 Beta-glucosidase, lact 90.5 1.4 3.1E-05 49.4 9.7 111 92-241 86-203 (524)
35 PF14488 DUF4434: Domain of un 90.3 0.99 2.1E-05 43.2 7.3 58 94-155 17-84 (166)
36 PRK02412 aroD 3-dehydroquinate 89.0 4 8.7E-05 41.3 10.8 135 75-250 74-211 (253)
37 TIGR01093 aroD 3-dehydroquinat 88.2 3.3 7.2E-05 40.9 9.5 124 87-250 67-193 (228)
38 cd00465 URO-D_CIMS_like The UR 87.4 0.97 2.1E-05 45.5 5.3 61 98-162 145-210 (306)
39 cd06593 GH31_xylosidase_YicI Y 87.2 27 0.00058 35.9 15.6 87 93-193 20-113 (308)
40 PF10566 Glyco_hydro_97: Glyco 86.9 1.1 2.5E-05 46.4 5.6 110 72-208 83-194 (273)
41 PRK11572 copper homeostasis pr 85.6 2.9 6.3E-05 43.0 7.6 73 74-158 50-126 (248)
42 TIGR02104 pulA_typeI pullulana 85.2 9 0.0002 43.4 12.0 64 97-160 164-256 (605)
43 PF03659 Glyco_hydro_71: Glyco 84.8 2.2 4.7E-05 46.1 6.6 57 95-160 15-71 (386)
44 PRK10658 putative alpha-glucos 84.5 35 0.00076 39.6 16.4 183 95-308 281-516 (665)
45 PRK01060 endonuclease IV; Prov 83.4 2 4.4E-05 42.7 5.3 58 81-150 1-63 (281)
46 PF00128 Alpha-amylase: Alpha 83.2 2.2 4.8E-05 41.4 5.4 64 95-161 2-80 (316)
47 PF03932 CutC: CutC family; I 83.2 2.3 4.9E-05 42.3 5.5 70 73-158 48-121 (201)
48 TIGR01463 mtaA_cmuA methyltran 82.2 2.1 4.6E-05 44.2 5.1 58 100-161 183-243 (340)
49 cd00502 DHQase_I Type I 3-dehy 81.8 21 0.00046 35.1 11.7 124 85-250 63-188 (225)
50 PF01487 DHquinase_I: Type I 3 80.7 19 0.00042 35.2 10.9 129 79-250 56-188 (224)
51 cd03308 CmuA_CmuC_like CmuA_Cm 79.8 3 6.6E-05 44.4 5.4 82 75-160 172-277 (378)
52 PRK13111 trpA tryptophan synth 78.9 10 0.00023 38.8 8.7 91 72-193 86-177 (258)
53 smart00642 Aamy Alpha-amylase 77.8 9.8 0.00021 36.2 7.6 69 93-161 15-97 (166)
54 PLN02361 alpha-amylase 77.7 6.5 0.00014 42.8 7.2 68 94-164 26-107 (401)
55 cd03311 CIMS_C_terminal_like C 77.4 11 0.00025 38.8 8.6 95 97-193 155-252 (332)
56 cd06592 GH31_glucosidase_KIAA1 76.9 28 0.0006 36.0 11.2 83 94-192 27-116 (303)
57 TIGR00542 hxl6Piso_put hexulos 75.9 4.1 9E-05 40.7 4.8 56 95-153 14-71 (279)
58 PRK13209 L-xylulose 5-phosphat 75.2 5.6 0.00012 39.6 5.5 67 82-153 8-76 (283)
59 TIGR00433 bioB biotin syntheta 73.7 6.9 0.00015 39.4 5.8 54 100-155 123-179 (296)
60 cd07944 DRE_TIM_HOA_like 4-hyd 73.2 26 0.00055 35.8 9.7 76 100-195 85-165 (266)
61 PHA00442 host recBCD nuclease 73.1 3.4 7.3E-05 33.8 2.7 27 101-146 30-56 (59)
62 PF00290 Trp_syntA: Tryptophan 72.8 33 0.00072 35.4 10.5 112 72-229 84-197 (259)
63 PLN02591 tryptophan synthase 72.1 24 0.00051 36.2 9.2 89 74-193 77-166 (250)
64 TIGR01515 branching_enzym alph 71.8 8.1 0.00017 44.0 6.3 56 95-156 154-228 (613)
65 COG1649 Uncharacterized protei 70.9 39 0.00085 37.4 11.0 127 91-233 58-198 (418)
66 PF01261 AP_endonuc_2: Xylose 70.4 3.5 7.6E-05 37.9 2.6 45 103-152 1-45 (213)
67 COG2730 BglC Endoglucanase [Ca 70.3 19 0.0004 38.9 8.4 110 94-242 65-187 (407)
68 PF02065 Melibiase: Melibiase; 69.7 7 0.00015 42.5 5.1 80 94-177 55-145 (394)
69 TIGR02402 trehalose_TreZ malto 69.5 9.7 0.00021 42.8 6.3 61 95-160 109-186 (542)
70 PRK09856 fructoselysine 3-epim 68.8 12 0.00026 37.0 6.2 51 98-155 14-68 (275)
71 TIGR02631 xylA_Arthro xylose i 67.1 4.7 0.0001 43.4 3.1 56 95-155 30-89 (382)
72 PF08821 CGGC: CGGC domain; I 66.6 18 0.00039 32.7 6.3 56 96-157 51-107 (107)
73 cd03307 Mta_CmuA_like MtaA_Cmu 66.5 6.1 0.00013 40.8 3.7 98 101-214 175-275 (326)
74 PRK12313 glycogen branching en 65.9 12 0.00026 42.6 6.2 60 91-156 164-242 (633)
75 PRK13125 trpA tryptophan synth 65.4 85 0.0018 31.5 11.4 65 74-155 73-137 (244)
76 TIGR01464 hemE uroporphyrinoge 65.3 10 0.00023 39.3 5.1 95 103-214 186-285 (338)
77 COG3867 Arabinogalactan endo-1 64.8 15 0.00033 39.4 6.2 59 98-158 64-126 (403)
78 PLN02229 alpha-galactosidase 64.8 15 0.00033 40.6 6.4 70 94-164 77-160 (427)
79 PRK13210 putative L-xylulose 5 63.7 16 0.00035 36.1 5.9 53 97-153 16-71 (284)
80 PRK06252 methylcobalamin:coenz 63.4 7.4 0.00016 40.2 3.6 55 100-160 183-240 (339)
81 cd00717 URO-D Uroporphyrinogen 63.3 12 0.00025 38.8 5.0 74 102-191 182-260 (335)
82 PF05706 CDKN3: Cyclin-depende 62.6 6.4 0.00014 38.5 2.8 66 77-150 26-103 (168)
83 PRK09989 hypothetical protein; 61.8 19 0.00042 35.6 6.1 42 98-151 16-57 (258)
84 cd06565 GH20_GcnA-like Glycosy 61.6 98 0.0021 32.2 11.4 132 92-232 12-177 (301)
85 cd04724 Tryptophan_synthase_al 60.4 48 0.001 33.3 8.7 62 75-155 76-137 (242)
86 PRK09441 cytoplasmic alpha-amy 59.7 23 0.0005 38.9 6.8 68 94-161 19-108 (479)
87 TIGR03234 OH-pyruv-isom hydrox 59.6 20 0.00042 35.2 5.7 42 98-151 15-56 (254)
88 PLN02808 alpha-galactosidase 59.1 18 0.00038 39.6 5.6 59 94-152 46-115 (386)
89 PRK00115 hemE uroporphyrinogen 59.1 16 0.00034 38.3 5.1 97 101-214 190-291 (346)
90 PRK08195 4-hyroxy-2-oxovalerat 59.0 49 0.0011 35.2 8.8 90 101-229 92-186 (337)
91 cd03309 CmuC_like CmuC_like. P 58.9 10 0.00022 39.9 3.8 51 106-160 164-221 (321)
92 cd03174 DRE_TIM_metallolyase D 58.7 53 0.0011 32.2 8.5 69 75-159 66-141 (265)
93 TIGR02102 pullulan_Gpos pullul 58.1 20 0.00044 44.0 6.4 62 95-156 478-577 (1111)
94 PLN02389 biotin synthase 58.0 19 0.00042 38.8 5.7 45 100-150 178-229 (379)
95 TIGR02403 trehalose_treC alpha 56.7 30 0.00066 38.8 7.2 66 93-160 23-101 (543)
96 PF01791 DeoC: DeoC/LacD famil 56.3 8.5 0.00018 38.0 2.5 53 100-153 79-131 (236)
97 PF13653 GDPD_2: Glycerophosph 56.2 10 0.00023 27.2 2.3 18 100-117 10-27 (30)
98 TIGR02456 treS_nterm trehalose 56.2 35 0.00077 38.1 7.6 66 93-161 24-103 (539)
99 PRK10785 maltodextrin glucosid 56.0 31 0.00068 39.2 7.2 111 95-223 177-312 (598)
100 PF01055 Glyco_hydro_31: Glyco 55.8 35 0.00076 36.6 7.2 86 93-194 39-134 (441)
101 TIGR03217 4OH_2_O_val_ald 4-hy 55.5 65 0.0014 34.2 9.0 92 100-230 90-186 (333)
102 PF01208 URO-D: Uroporphyrinog 54.9 17 0.00038 37.3 4.6 55 101-160 186-243 (343)
103 cd07943 DRE_TIM_HOA 4-hydroxy- 54.5 55 0.0012 33.0 8.0 92 101-231 89-185 (263)
104 PRK04302 triosephosphate isome 54.5 28 0.0006 34.3 5.8 48 100-157 75-122 (223)
105 PRK09997 hydroxypyruvate isome 54.1 26 0.00055 34.7 5.5 41 98-150 16-56 (258)
106 PF01026 TatD_DNase: TatD rela 53.2 77 0.0017 31.7 8.7 47 99-157 16-62 (255)
107 PRK13398 3-deoxy-7-phosphohept 52.9 49 0.0011 34.2 7.4 62 91-157 35-99 (266)
108 PLN02877 alpha-amylase/limit d 52.4 25 0.00054 42.6 5.9 63 98-160 374-493 (970)
109 PLN00196 alpha-amylase; Provis 51.9 44 0.00096 36.7 7.3 64 95-161 42-119 (428)
110 COG3142 CutC Uncharacterized p 51.7 40 0.00087 34.8 6.4 77 72-160 48-128 (241)
111 cd07941 DRE_TIM_LeuA3 Desulfob 51.3 81 0.0018 32.2 8.7 103 101-230 82-194 (273)
112 TIGR00674 dapA dihydrodipicoli 50.8 32 0.0007 35.0 5.7 95 74-193 66-163 (285)
113 PRK12595 bifunctional 3-deoxy- 50.7 54 0.0012 35.3 7.6 74 75-157 117-190 (360)
114 PRK07360 FO synthase subunit 2 50.7 13 0.00029 39.5 3.0 47 99-150 162-217 (371)
115 cd01299 Met_dep_hydrolase_A Me 50.6 48 0.001 33.8 6.9 65 92-160 115-182 (342)
116 PRK10933 trehalose-6-phosphate 50.6 38 0.00082 38.2 6.7 65 93-160 29-107 (551)
117 PLN02417 dihydrodipicolinate s 48.7 1.1E+02 0.0023 31.4 9.1 93 74-193 69-164 (280)
118 PLN02433 uroporphyrinogen deca 48.1 31 0.00066 36.3 5.2 76 102-191 184-262 (345)
119 PRK09505 malS alpha-amylase; R 47.7 38 0.00083 39.5 6.3 62 95-156 228-314 (683)
120 PLN02692 alpha-galactosidase 47.5 34 0.00073 37.8 5.5 57 94-150 70-137 (412)
121 TIGR02090 LEU1_arch isopropylm 46.7 61 0.0013 34.6 7.2 85 99-193 73-166 (363)
122 PF10566 Glyco_hydro_97: Glyco 46.7 47 0.001 34.7 6.2 68 94-163 29-101 (273)
123 COG0159 TrpA Tryptophan syntha 45.8 1.2E+02 0.0026 31.8 8.9 93 72-195 91-184 (265)
124 CHL00200 trpA tryptophan synth 45.8 63 0.0014 33.4 6.9 91 73-194 89-180 (263)
125 PRK08508 biotin synthase; Prov 45.0 2.2E+02 0.0049 29.1 10.7 55 94-154 40-95 (279)
126 TIGR03551 F420_cofH 7,8-dideme 44.6 17 0.00037 38.1 2.7 54 100-153 141-198 (343)
127 TIGR00677 fadh2_euk methylenet 44.6 56 0.0012 33.9 6.4 71 99-181 147-226 (281)
128 TIGR03849 arch_ComA phosphosul 44.5 45 0.00097 34.3 5.5 69 74-155 53-121 (237)
129 cd06564 GH20_DspB_LnbB-like Gl 44.3 2.3E+02 0.005 29.6 10.9 132 92-232 12-192 (326)
130 cd00958 DhnA Class I fructose- 44.0 50 0.0011 32.4 5.7 66 94-165 73-138 (235)
131 cd06604 GH31_glucosidase_II_Ma 43.6 2.3E+02 0.0051 29.7 10.9 86 92-193 19-113 (339)
132 PRK14511 maltooligosyl trehalo 43.5 78 0.0017 38.2 8.0 65 95-160 18-95 (879)
133 PRK04326 methionine synthase; 43.2 40 0.00087 34.9 5.1 78 97-191 161-239 (330)
134 PRK08508 biotin synthase; Prov 43.0 27 0.00059 35.7 3.8 45 100-150 102-153 (279)
135 cd00408 DHDPS-like Dihydrodipi 42.4 81 0.0017 31.7 7.0 95 74-193 65-162 (281)
136 TIGR03699 mena_SCO4550 menaqui 42.2 19 0.0004 37.5 2.5 53 100-152 143-199 (340)
137 PRK12858 tagatose 1,6-diphosph 42.1 61 0.0013 34.8 6.4 56 97-152 106-161 (340)
138 PRK14706 glycogen branching en 42.1 57 0.0012 37.8 6.5 61 91-156 161-239 (639)
139 cd00950 DHDPS Dihydrodipicolin 41.9 1E+02 0.0022 31.1 7.7 95 74-193 68-165 (284)
140 PRK13655 phosphoenolpyruvate c 41.8 83 0.0018 35.7 7.5 100 132-237 216-326 (494)
141 PRK09936 hypothetical protein; 41.7 53 0.0012 34.9 5.7 52 94-154 35-92 (296)
142 cd02742 GH20_hexosaminidase Be 41.6 3.2E+02 0.0068 28.4 11.3 131 92-232 11-183 (303)
143 PRK05222 5-methyltetrahydropte 41.5 37 0.0008 40.0 5.0 82 97-189 581-667 (758)
144 PF02836 Glyco_hydro_2_C: Glyc 40.6 39 0.00085 34.3 4.5 50 93-156 32-81 (298)
145 COG2876 AroA 3-deoxy-D-arabino 40.5 49 0.0011 34.9 5.2 54 95-148 227-282 (286)
146 PRK05402 glycogen branching en 40.4 66 0.0014 37.6 6.8 63 91-158 259-340 (726)
147 PRK15108 biotin synthase; Prov 40.1 3.5E+02 0.0077 28.8 11.6 55 94-155 76-130 (345)
148 PRK03170 dihydrodipicolinate s 39.6 1.3E+02 0.0028 30.7 8.0 96 74-193 69-166 (292)
149 TIGR02103 pullul_strch alpha-1 39.5 39 0.00084 40.7 4.8 25 99-123 288-314 (898)
150 PRK07094 biotin synthase; Prov 39.5 35 0.00076 35.1 4.0 52 100-152 129-183 (323)
151 PLN02960 alpha-amylase 39.2 79 0.0017 38.3 7.2 58 92-156 411-486 (897)
152 TIGR00423 radical SAM domain p 38.9 31 0.00068 35.6 3.5 53 99-151 106-162 (309)
153 cd06563 GH20_chitobiase-like T 38.7 3.6E+02 0.0077 28.7 11.4 63 92-154 13-106 (357)
154 PF14488 DUF4434: Domain of un 38.6 3.7E+02 0.0079 25.9 11.8 143 111-290 1-151 (166)
155 COG1099 Predicted metal-depend 38.5 22 0.00048 36.8 2.3 59 100-160 14-76 (254)
156 PF01717 Meth_synt_2: Cobalami 38.5 63 0.0014 33.4 5.7 86 97-194 154-245 (324)
157 cd07939 DRE_TIM_NifV Streptomy 38.0 1.4E+02 0.0031 30.0 8.0 99 100-229 72-181 (259)
158 PLN02540 methylenetetrahydrofo 37.7 73 0.0016 36.6 6.4 74 97-181 153-234 (565)
159 TIGR00262 trpA tryptophan synt 37.6 67 0.0014 32.8 5.6 63 74-155 86-148 (256)
160 cd06568 GH20_SpHex_like A subg 37.3 4.1E+02 0.0088 28.2 11.5 129 92-232 13-187 (329)
161 TIGR00676 fadh2 5,10-methylene 37.3 2.5E+02 0.0054 28.7 9.7 156 94-291 12-183 (272)
162 PRK03906 mannonate dehydratase 37.1 50 0.0011 36.0 4.9 50 102-155 15-64 (385)
163 TIGR03700 mena_SCO4494 putativ 37.0 34 0.00074 36.1 3.6 54 99-152 149-206 (351)
164 PLN02520 bifunctional 3-dehydr 36.9 1.7E+02 0.0038 32.9 9.2 58 86-157 85-143 (529)
165 PRK08445 hypothetical protein; 36.5 40 0.00087 35.9 4.0 55 100-154 144-202 (348)
166 PRK05692 hydroxymethylglutaryl 36.4 1.9E+02 0.004 30.1 8.7 105 100-230 82-198 (287)
167 PRK06256 biotin synthase; Vali 36.3 37 0.0008 35.2 3.6 46 100-151 152-204 (336)
168 PF05226 CHASE2: CHASE2 domain 36.2 3E+02 0.0065 28.0 10.1 57 94-157 61-117 (310)
169 smart00481 POLIIIAc DNA polyme 35.9 1.1E+02 0.0024 24.1 5.6 43 98-151 16-58 (67)
170 TIGR00695 uxuA mannonate dehyd 35.8 57 0.0012 35.9 5.0 50 102-155 15-64 (394)
171 PF02679 ComA: (2R)-phospho-3- 35.1 50 0.0011 34.1 4.2 88 73-177 65-152 (244)
172 cd07948 DRE_TIM_HCS Saccharomy 34.8 1.4E+02 0.0031 30.5 7.5 53 101-155 75-133 (262)
173 PRK02227 hypothetical protein; 34.6 47 0.001 34.2 3.9 46 101-150 135-183 (238)
174 PF04187 DUF399: Protein of un 34.3 32 0.0007 34.1 2.7 21 131-151 86-106 (213)
175 cd07947 DRE_TIM_Re_CS Clostrid 33.7 2E+02 0.0043 29.9 8.4 85 100-195 77-177 (279)
176 PRK15108 biotin synthase; Prov 33.4 62 0.0014 34.3 4.8 45 100-150 136-187 (345)
177 PLN02561 triosephosphate isome 33.3 2.6E+02 0.0057 28.9 9.1 45 101-155 79-127 (253)
178 PF05378 Hydant_A_N: Hydantoin 33.3 71 0.0015 30.8 4.8 45 95-147 132-176 (176)
179 cd06600 GH31_MGAM-like This fa 33.2 3.8E+02 0.0083 28.0 10.4 87 93-193 20-113 (317)
180 COG2352 Ppc Phosphoenolpyruvat 32.9 36 0.00078 40.7 3.1 67 93-166 532-612 (910)
181 PF04244 DPRP: Deoxyribodipyri 32.9 1.4E+02 0.0031 30.1 7.0 25 208-233 138-162 (224)
182 PF00682 HMGL-like: HMGL-like 32.8 4.2E+02 0.009 25.9 10.1 98 95-231 65-181 (237)
183 PLN02475 5-methyltetrahydropte 32.7 71 0.0015 37.9 5.5 82 97-190 586-673 (766)
184 cd06602 GH31_MGAM_SI_GAA This 32.2 4.8E+02 0.01 27.7 11.1 93 92-195 19-120 (339)
185 PLN02447 1,4-alpha-glucan-bran 32.2 1.1E+02 0.0024 36.4 6.9 77 77-159 231-326 (758)
186 PRK06520 5-methyltetrahydropte 32.1 76 0.0016 34.1 5.2 67 97-164 170-247 (368)
187 CHL00200 trpA tryptophan synth 31.3 3.7E+02 0.008 27.8 9.8 102 383-510 97-200 (263)
188 cd07491 Peptidases_S8_7 Peptid 31.1 2.1E+02 0.0046 28.7 7.9 72 94-174 86-159 (247)
189 PF09184 PPP4R2: PPP4R2; Inte 30.9 35 0.00075 35.8 2.4 31 481-511 97-128 (288)
190 cd04871 ACT_PSP_2 ACT domains 30.7 44 0.00096 28.4 2.6 50 396-450 16-83 (84)
191 smart00518 AP2Ec AP endonuclea 30.4 1.2E+02 0.0027 29.9 6.1 52 97-150 10-61 (273)
192 PF04476 DUF556: Protein of un 30.4 58 0.0013 33.6 3.8 44 103-150 137-183 (235)
193 smart00854 PGA_cap Bacterial c 30.4 1.2E+02 0.0026 30.0 6.0 57 95-158 158-214 (239)
194 PF01902 ATP_bind_4: ATP-bindi 30.3 83 0.0018 31.7 4.8 59 394-453 123-181 (218)
195 cd00598 GH18_chitinase-like Th 30.0 1.3E+02 0.0029 28.2 5.9 69 74-146 63-136 (210)
196 cd08627 PI-PLCc_gamma1 Catalyt 29.9 45 0.00098 34.2 2.9 31 90-121 23-53 (229)
197 PRK00042 tpiA triosephosphate 29.9 90 0.002 32.1 5.1 45 101-155 77-125 (250)
198 COG0149 TpiA Triosephosphate i 29.8 93 0.002 32.4 5.1 44 102-155 80-127 (251)
199 cd06591 GH31_xylosidase_XylS X 29.8 6.7E+02 0.014 26.2 12.2 88 93-195 20-115 (319)
200 cd00019 AP2Ec AP endonuclease 29.7 1.5E+02 0.0032 29.7 6.5 52 97-150 10-62 (279)
201 PF00701 DHDPS: Dihydrodipicol 29.3 2.1E+02 0.0045 29.1 7.6 111 74-211 69-186 (289)
202 PRK09875 putative hydrolase; P 29.2 1.4E+02 0.0031 31.2 6.5 69 90-177 27-95 (292)
203 COG0620 MetE Methionine syntha 29.2 1.5E+02 0.0033 31.7 6.8 64 97-166 158-227 (330)
204 COG1082 IolE Sugar phosphate i 29.1 1E+02 0.0022 30.1 5.2 49 95-150 13-61 (274)
205 PRK12677 xylose isomerase; Pro 28.9 1.2E+02 0.0026 32.9 6.0 51 98-153 32-86 (384)
206 cd00954 NAL N-Acetylneuraminic 28.7 2.2E+02 0.0048 29.1 7.7 95 74-193 69-167 (288)
207 PLN02746 hydroxymethylglutaryl 28.5 2E+02 0.0044 31.0 7.6 74 99-179 123-203 (347)
208 cd06413 GH25_muramidase_1 Unch 28.4 1.5E+02 0.0032 28.5 6.0 107 102-234 16-124 (191)
209 cd08560 GDPD_EcGlpQ_like_1 Gly 28.3 70 0.0015 34.5 4.2 50 99-152 247-296 (356)
210 PRK09121 5-methyltetrahydropte 28.1 78 0.0017 33.6 4.4 60 97-164 156-216 (339)
211 cd08592 PI-PLCc_gamma Catalyti 27.9 51 0.0011 33.8 2.9 31 90-121 23-53 (229)
212 COG3250 LacZ Beta-galactosidas 27.9 1.6E+02 0.0035 35.3 7.3 27 91-117 315-341 (808)
213 TIGR02401 trehalose_TreY malto 27.7 2.1E+02 0.0045 34.6 8.1 65 95-160 14-91 (825)
214 PRK12331 oxaloacetate decarbox 27.4 1.6E+02 0.0034 32.9 6.7 52 95-156 94-145 (448)
215 TIGR03679 arCOG00187 arCOG0018 27.2 1.2E+02 0.0027 30.0 5.4 58 395-453 125-182 (218)
216 cd03319 L-Ala-DL-Glu_epimerase 26.9 61 0.0013 33.3 3.3 57 92-164 236-293 (316)
217 PRK12568 glycogen branching en 26.9 1.5E+02 0.0032 35.3 6.7 59 93-156 265-341 (730)
218 PF00070 Pyr_redox: Pyridine n 26.7 1.5E+02 0.0032 24.1 5.0 46 396-448 13-58 (80)
219 COG2019 AdkA Archaeal adenylat 26.2 3.7E+02 0.0081 27.1 8.3 92 139-240 71-168 (189)
220 PF01183 Glyco_hydro_25: Glyco 26.2 1.5E+02 0.0033 27.9 5.6 109 103-234 12-120 (181)
221 TIGR02100 glgX_debranch glycog 26.1 1.1E+02 0.0023 35.9 5.4 65 96-160 181-272 (688)
222 cd03310 CIMS_like CIMS - Cobal 25.9 2.2E+02 0.0048 29.0 7.1 59 97-161 151-211 (321)
223 TIGR00010 hydrolase, TatD fami 25.8 1.5E+02 0.0033 28.5 5.6 46 99-157 17-62 (252)
224 PRK14510 putative bifunctional 25.7 3.5E+02 0.0076 34.0 9.9 62 101-162 191-276 (1221)
225 PRK11858 aksA trans-homoaconit 25.7 2.9E+02 0.0063 29.8 8.2 102 99-229 77-187 (378)
226 PRK15452 putative protease; Pr 25.7 76 0.0017 35.2 4.0 37 75-116 59-95 (443)
227 cd06562 GH20_HexA_HexB-like Be 25.7 7.9E+02 0.017 26.1 11.4 63 92-154 13-90 (348)
228 TIGR02529 EutJ ethanolamine ut 25.6 1.9E+02 0.0041 29.0 6.4 63 81-155 25-96 (239)
229 PF03786 UxuA: D-mannonate deh 25.5 55 0.0012 35.5 2.8 50 102-155 16-66 (351)
230 cd06597 GH31_transferase_CtsY 25.4 7.6E+02 0.017 26.2 11.2 60 93-152 20-103 (340)
231 COG1619 LdcA Uncharacterized p 25.3 1.7E+02 0.0037 31.3 6.3 98 75-187 10-107 (313)
232 PRK06233 hypothetical protein; 25.2 1.3E+02 0.0028 32.4 5.5 67 97-164 171-249 (372)
233 PRK09240 thiH thiamine biosynt 25.1 1.8E+02 0.0039 31.2 6.5 46 100-150 163-219 (371)
234 PRK05926 hypothetical protein; 25.1 68 0.0015 34.6 3.4 56 99-154 168-227 (370)
235 TIGR03212 uraD_N-term-dom puta 25.0 58 0.0013 34.1 2.8 30 385-414 70-99 (297)
236 PRK14566 triosephosphate isome 24.9 1.2E+02 0.0027 31.5 5.1 44 102-155 87-134 (260)
237 PTZ00445 p36-lilke protein; Pr 24.8 1.7E+02 0.0038 29.9 6.0 62 92-153 24-97 (219)
238 PF13380 CoA_binding_2: CoA bi 24.8 1.4E+02 0.0029 26.8 4.7 45 92-150 61-105 (116)
239 TIGR00419 tim triosephosphate 24.4 1.4E+02 0.0031 29.8 5.2 46 101-156 72-117 (205)
240 TIGR00683 nanA N-acetylneurami 24.4 5E+02 0.011 26.8 9.4 95 74-193 69-167 (290)
241 PRK08673 3-deoxy-7-phosphohept 24.3 1.9E+02 0.004 31.2 6.4 62 89-157 99-165 (335)
242 TIGR03056 bchO_mg_che_rel puta 24.2 2.6E+02 0.0057 26.4 6.9 78 363-445 11-94 (278)
243 TIGR02884 spore_pdaA delta-lac 24.0 1.5E+02 0.0034 29.2 5.4 81 396-490 143-223 (224)
244 PF01136 Peptidase_U32: Peptid 24.0 72 0.0016 31.1 3.1 22 97-118 2-23 (233)
245 COG1856 Uncharacterized homolo 23.7 85 0.0018 32.7 3.6 57 100-157 100-161 (275)
246 PRK00957 methionine synthase; 23.4 1.3E+02 0.0028 30.9 5.0 79 97-193 144-223 (305)
247 COG4130 Predicted sugar epimer 23.2 1.5E+02 0.0032 30.9 5.1 69 74-147 95-164 (272)
248 cd02801 DUS_like_FMN Dihydrour 23.2 2.3E+02 0.0049 27.4 6.3 64 73-146 52-121 (231)
249 TIGR01371 met_syn_B12ind 5-met 23.2 1.1E+02 0.0024 36.1 4.9 83 97-189 575-661 (750)
250 cd08212 RuBisCO_large_I Ribulo 23.2 1.5E+02 0.0033 33.1 5.7 52 95-157 224-275 (450)
251 TIGR01949 AroFGH_arch predicte 23.0 1.3E+02 0.0028 30.3 4.7 52 98-153 91-142 (258)
252 cd06594 GH31_glucosidase_YihQ 23.0 7.7E+02 0.017 25.9 10.5 88 95-194 21-120 (317)
253 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.9 1.7E+02 0.0037 29.9 5.7 51 95-155 89-139 (275)
254 PLN02784 alpha-amylase 22.7 2E+02 0.0043 35.0 6.7 63 96-161 520-596 (894)
255 cd08179 NADPH_BDH NADPH-depend 22.7 95 0.0021 33.0 3.9 65 93-169 35-99 (375)
256 TIGR02026 BchE magnesium-proto 22.3 1.7E+02 0.0037 32.5 5.9 49 100-153 287-342 (497)
257 PF04909 Amidohydro_2: Amidohy 22.2 1.9E+02 0.0041 27.7 5.5 63 75-150 71-133 (273)
258 cd06599 GH31_glycosidase_Aec37 22.2 2.4E+02 0.0052 29.4 6.6 86 96-193 28-120 (317)
259 TIGR03128 RuMP_HxlA 3-hexulose 22.1 2E+02 0.0044 27.4 5.7 43 102-155 68-110 (206)
260 cd07381 MPP_CapA CapA and rela 22.1 2.5E+02 0.0054 27.6 6.5 57 94-157 159-215 (239)
261 PF00834 Ribul_P_3_epim: Ribul 22.1 82 0.0018 31.2 3.1 45 94-146 9-55 (201)
262 cd03315 MLE_like Muconate lact 22.0 1E+02 0.0022 30.8 3.8 47 91-150 187-234 (265)
263 PRK13210 putative L-xylulose 5 21.9 1.5E+02 0.0032 29.3 4.9 60 96-157 93-154 (284)
264 TIGR00539 hemN_rel putative ox 21.9 1.9E+02 0.0042 30.5 5.9 52 100-156 100-159 (360)
265 PRK04175 rpl7ae 50S ribosomal 21.8 2.3E+02 0.0049 26.1 5.6 45 391-447 32-76 (122)
266 COG5561 Predicted metal-bindin 21.7 2.9E+02 0.0063 25.1 6.0 55 97-158 42-99 (101)
267 TIGR02351 thiH thiazole biosyn 21.7 2.4E+02 0.0052 30.2 6.6 45 100-149 162-216 (366)
268 TIGR03234 OH-pyruv-isom hydrox 21.7 2.4E+02 0.0053 27.6 6.3 57 97-157 84-144 (254)
269 PRK08005 epimerase; Validated 21.6 98 0.0021 31.1 3.5 45 94-146 10-56 (210)
270 TIGR00676 fadh2 5,10-methylene 21.3 3E+02 0.0065 28.2 7.0 72 99-181 143-222 (272)
271 COG2342 Predicted extracellula 21.2 1.5E+02 0.0033 31.6 4.8 64 97-163 126-197 (300)
272 PTZ00398 phosphoenolpyruvate c 21.0 88 0.0019 38.2 3.5 53 109-165 616-671 (974)
273 PRK00009 phosphoenolpyruvate c 21.0 83 0.0018 38.1 3.3 34 132-168 581-617 (911)
274 PRK14705 glycogen branching en 20.9 1.8E+02 0.0039 36.6 6.1 53 96-155 764-834 (1224)
275 PRK05799 coproporphyrinogen II 20.8 1.7E+02 0.0037 30.8 5.3 50 100-154 99-156 (374)
276 PRK14565 triosephosphate isome 20.7 1.7E+02 0.0038 30.0 5.1 44 102-155 77-124 (237)
277 PLN03231 putative alpha-galact 20.7 1E+02 0.0022 33.5 3.6 47 104-150 29-102 (357)
278 PF03869 Arc: Arc-like DNA bin 20.6 64 0.0014 25.4 1.6 25 426-450 9-33 (50)
279 PRK13575 3-dehydroquinate dehy 20.6 3.5E+02 0.0076 27.5 7.2 59 88-157 73-133 (238)
280 COG1060 ThiH Thiamine biosynth 20.5 1.4E+02 0.003 32.5 4.6 58 98-155 159-220 (370)
281 cd06522 GH25_AtlA-like AtlA is 20.4 3.2E+02 0.0069 26.3 6.7 49 102-157 17-65 (192)
282 cd06338 PBP1_ABC_ligand_bindin 20.2 4.7E+02 0.01 26.2 8.1 43 98-153 184-226 (345)
283 cd07938 DRE_TIM_HMGL 3-hydroxy 20.2 8.4E+02 0.018 25.1 10.0 106 100-229 76-191 (274)
284 PRK09997 hydroxypyruvate isome 20.1 2.6E+02 0.0056 27.7 6.2 56 97-157 85-145 (258)
285 PRK13397 3-deoxy-7-phosphohept 20.1 2.9E+02 0.0064 28.7 6.6 62 91-157 23-87 (250)
286 TIGR02666 moaA molybdenum cofa 20.1 4.1E+02 0.0089 27.5 7.8 15 102-116 104-118 (334)
287 COG2159 Predicted metal-depend 20.0 5E+02 0.011 27.0 8.4 80 98-188 114-196 (293)
No 1
>PLN02803 beta-amylase
Probab=100.00 E-value=9.7e-194 Score=1522.48 Aligned_cols=506 Identities=47% Similarity=0.853 Sum_probs=459.6
Q ss_pred ccccccceecccCcCCCCCCCccccccccCccc-ccccccccccCCCCCCCCC-----CCCCccccccCCCC-CCCCCCc
Q 009162 4 ATFAPSFCCTRTEPTQLPRFRLTHSHKLQSQTR-RLSVSCRLNSSNSLSPADN-----NNNNRYKLHDGASS-QGRRNGS 76 (541)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~v 76 (541)
.++.+.+||+....+.+. +|+..++.. |++.+..+++......+.. ......+.+++... .+..++|
T Consensus 13 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 86 (548)
T PLN02803 13 SPKDTKSLKTPDDFSGTI------CFAPIKPSCYRLQAKNSMQEAQLTHEEIFTPEGRKSENWEKLHALSGPHSKNDSGV 86 (548)
T ss_pred CCcccccccccccccccc------cccCCCCcccccccccccchhhcccCcccCccccccccccccccccCcccccCCce
Confidence 356667777776666544 444444433 4444555554333333221 11112234443333 4678899
Q ss_pred ceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEee
Q 009162 77 PVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 77 pv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 156 (541)
|||||||||+|+++|+++++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||||||||
T Consensus 87 pvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSF 166 (548)
T PLN02803 87 PVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSF 166 (548)
T ss_pred eEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCc
Q 009162 157 HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAI 236 (541)
Q Consensus 157 HqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~ 236 (541)
|||||||||+|+||||+||++++++||||+||||+|+||+||||||||++|||+||||+|+|+|||+|||++|++|++++
T Consensus 167 HqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~ 246 (548)
T PLN02803 167 HQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGV 246 (548)
T ss_pred cccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcc
Q 009162 237 ITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFF 316 (541)
Q Consensus 237 I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF 316 (541)
|+||+|||||||||||||||+..|+|+| |||||||||||||+++||++|+++|||+||++||+|+|+||++|++|+||
T Consensus 247 I~eI~VGlGP~GELRYPSYp~~~g~w~f--PGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF 324 (548)
T PLN02803 247 IAEIQVGMGPCGELRYPSYPESNGTWRF--PGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFF 324 (548)
T ss_pred eEEEEeccccCccccCCCCcCcCCCccC--CCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCC
Confidence 9999999999999999999999888999 99999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCCCCCChHH
Q 009162 317 RTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLP 396 (541)
Q Consensus 317 ~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~ 396 (541)
++ +|+|+|+||||||+|||++|++||||||+.|+.+|++++|+|++|||||||||+|+||||||||||||+++||||.|
T Consensus 325 ~~-~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~ 403 (548)
T PLN02803 325 RR-DGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLP 403 (548)
T ss_pred CC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcccHHH
Confidence 97 58999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCCCC
Q 009162 397 IARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGLE 476 (541)
Q Consensus 397 Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~~~~~ 476 (541)
||+|||||||+|+||||||+|.+|| ++++|+||+||+||+++|+++||+|+|||||++||.++|+||++++++.. .
T Consensus 404 Ia~mf~rh~~~l~FTClEM~D~eqp-~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~---~ 479 (548)
T PLN02803 404 IARMFSKHGVVLNFTCMEMRDGEQP-EHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDS---G 479 (548)
T ss_pred HHHHHHHcCCeEEEEecCcccCCCC-ccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcccc---c
Confidence 9999999999999999999999999 79999999999999999999999999999999999999999999987533 1
Q ss_pred CCcceeeEecCCccccCCcChHHHHHHHHHhhCCcc--ccccccccCC
Q 009162 477 KPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSI--FRAKLDFRGD 522 (541)
Q Consensus 477 ~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~--~~~~~~~~~~ 522 (541)
.+|++||||||+++||+++||++|++|||+||++++ .+++++.++.
T Consensus 480 ~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~ 527 (548)
T PLN02803 480 NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRNRRLPECDTEGS 527 (548)
T ss_pred CceeeeEEecCChHHcChhhHHHHHHHHHHhcCccccCccchhhccCc
Confidence 368899999999999999999999999999999876 4667777654
No 2
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=2.3e-193 Score=1523.21 Aligned_cols=492 Identities=48% Similarity=0.890 Sum_probs=458.8
Q ss_pred ccccCccccccc--ccccccCCCCCCCCCCC------C-----C--------------ccccccCCCC--CCCCCCcceE
Q 009162 29 HKLQSQTRRLSV--SCRLNSSNSLSPADNNN------N-----N--------------RYKLHDGASS--QGRRNGSPVF 79 (541)
Q Consensus 29 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~-----~--------------~~~~~~~~~~--~~~~~~vpv~ 79 (541)
|++.+|.+|+++ +.+|+..+......... + . ..++.+..+. .+..++||||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpvy 109 (573)
T PLN00197 30 AKPPSPRMRCPKAMARNYEQKSQPTSPCMSPILGGMRADLSVACRAFATENDVVTIEEQREEREYRIGGTKEKGKGVPVY 109 (573)
T ss_pred ccCCCCcccccccccchhhhhhcCCCcccCcccccccccchHHHhhhhccccccccccchhhhccccccccccCCCeeEE
Confidence 888999999988 89988876655443211 1 0 0122232222 4678899999
Q ss_pred EeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecC
Q 009162 80 VKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQC 159 (541)
Q Consensus 80 VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqC 159 (541)
||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|||||||||||||
T Consensus 110 VMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFHqC 189 (573)
T PLN00197 110 VMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFHQC 189 (573)
T ss_pred EEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceeE
Q 009162 160 GSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITG 239 (541)
Q Consensus 160 GGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~e 239 (541)
||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||+|+|+|||+|||++|++||+++|+|
T Consensus 190 GGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~~~I~e 269 (573)
T PLN00197 190 GGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLGDTIVE 269 (573)
T ss_pred CCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhcCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcccCC
Q 009162 240 VQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTD 319 (541)
Q Consensus 240 I~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~ 319 (541)
|+|||||||||||||||+..|+|+| |||||||||||||+++||++|+++|||+||++||+|+|+||+.|++|+||+++
T Consensus 270 I~VGlGP~GELRYPSYp~~~g~w~f--PGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~ 347 (573)
T PLN00197 270 IQVGMGPAGELRYPSYPEQNGTWKF--PGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYNNWPEDTRFFKKE 347 (573)
T ss_pred EEeccCcCccccCCCCcCcCCCcCC--CCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccCCCCCCCCCCCCC
Confidence 9999999999999999999888999 99999999999999999999999999999999999999999999999999976
Q ss_pred CCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCCCCCChHHHHH
Q 009162 320 NGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIAR 399 (541)
Q Consensus 320 ~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~ 399 (541)
+|+|+|+||||||+|||++|++||||||++|+.+|++++|+|++|||||||||+|+||||||||||||+++||||.|||+
T Consensus 348 gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYNt~~rDGY~~Ia~ 427 (573)
T PLN00197 348 GGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYNTRFRDGYLPIAQ 427 (573)
T ss_pred CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhccccccCCCcccHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCC--CCC
Q 009162 400 IFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEG--LEK 477 (541)
Q Consensus 400 mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~~~--~~~ 477 (541)
|||||||+|+||||||+|.+|| ++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++...++ ...
T Consensus 428 mfarh~~~l~FTClEM~D~eqp-~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~~~~~~~~~~~~ 506 (573)
T PLN00197 428 MLARHGAIFNFTCIEMRDHEQP-QDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQASSLNIDGNSEDR 506 (573)
T ss_pred HHHHcCCeEEEEecCcccCCCC-ccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhcccccCCCcccC
Confidence 9999999999999999999999 7999999999999999999999999999999999999999999997654433 336
Q ss_pred CcceeeEecCCccccCCcChHHHHHHHHHhhCCccc--cccccccCCc
Q 009162 478 PSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIF--RAKLDFRGDI 523 (541)
Q Consensus 478 ~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~--~~~~~~~~~~ 523 (541)
+|++||||||++.||+++||++|++|||+||++... +++++.++..
T Consensus 507 ~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~ 554 (573)
T PLN00197 507 EMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSHRCREQVEREAE 554 (573)
T ss_pred ceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCCccchhcchhcc
Confidence 799999999999999999999999999999999764 6666665543
No 3
>PLN02801 beta-amylase
Probab=100.00 E-value=1.2e-187 Score=1470.50 Aligned_cols=439 Identities=41% Similarity=0.784 Sum_probs=424.6
Q ss_pred CCCCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCc
Q 009162 70 QGRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLK 149 (541)
Q Consensus 70 ~~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLK 149 (541)
.+..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|||
T Consensus 10 ~~~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLK 89 (517)
T PLN02801 10 KMLANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLK 89 (517)
T ss_pred cccCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCe
Confidence 56678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHH
Q 009162 150 VRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (541)
Q Consensus 150 v~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f 229 (541)
||||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||||++||++||||+|+|+|||+|||++|
T Consensus 90 lq~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F 169 (517)
T PLN02801 90 IQAIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENM 169 (517)
T ss_pred EEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC-ceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCC
Q 009162 230 RPLLGA-IITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQ 308 (541)
Q Consensus 230 ~~~~g~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~ 308 (541)
++|+++ +|+||+|||||||||||||||+.. +|+| |||||||||||||+++||++|+++||++||+ |+|+|+||+
T Consensus 170 ~~~l~~~~I~eI~VGlGP~GELRYPSYp~~~-gW~f--pGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~--P~dag~Yn~ 244 (517)
T PLN02801 170 ADFLEAGVIIDIEVGLGPAGELRYPSYPETQ-GWVF--PGIGEFQCYDKYLKADFKEAATEAGHPEWEL--PDDAGEYND 244 (517)
T ss_pred HHhccCCeeEEEEEcccccccccCCCCcCCC-CCCC--CCcceeeeccHHHHHHHHHHHHhcCCcccCC--CCCCCcccC
Confidence 999974 999999999999999999999987 4999 9999999999999999999999999999995 999999999
Q ss_pred CCCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCC
Q 009162 309 DPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNT 388 (541)
Q Consensus 309 ~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt 388 (541)
+|++|+||++ +|+|+|+||||||+|||++|++||||||++|+++|++++|+|+||||||||||+|+||||||||||||+
T Consensus 245 ~P~~t~FF~~-~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~ 323 (517)
T PLN02801 245 TPEDTGFFKS-NGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNL 323 (517)
T ss_pred CCCCCCCCCC-CCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccC
Confidence 9999999997 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhh
Q 009162 389 STRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMS 468 (541)
Q Consensus 389 ~~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~ 468 (541)
++||||.|||+|||||+|+|+||||||+|++|| ++++|+||+||+||+++|+++||+|+|||||+|||.++|+||++|+
T Consensus 324 ~~rDGY~pIa~m~~rh~~~l~FTClEM~D~eq~-~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a 402 (517)
T PLN02801 324 KGRDGYRPIARMLSRHYGILNFTCLEMRDTEQP-AEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNA 402 (517)
T ss_pred CCccchHHHHHHHHHcCCeEEEeecccccCCCC-cccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHh
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cccCCC----CCCCcceeeEecCCccccCCcChHHHHHHHHHhhCCccccc
Q 009162 469 KFYSEG----LEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSSIFRA 515 (541)
Q Consensus 469 ~~~~~~----~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~~~~~ 515 (541)
++++.+ ...+|++||||||++.||+++||++|++|||+||++.+.-+
T Consensus 403 ~~~~~~~~g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~~ 453 (517)
T PLN02801 403 RPNGVNKDGKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQDYCP 453 (517)
T ss_pred hhccCCcccccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccccCC
Confidence 865422 12468999999999999999999999999999998866533
No 4
>PLN02161 beta-amylase
Probab=100.00 E-value=2.8e-187 Score=1467.22 Aligned_cols=435 Identities=40% Similarity=0.732 Sum_probs=422.4
Q ss_pred CCCCCCcceEEeeecceeccCC----eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHh
Q 009162 70 QGRRNGSPVFVKLPEDSTMIGG----KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASN 145 (541)
Q Consensus 70 ~~~~~~vpv~VMlPLd~V~~~~----~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~ 145 (541)
....++||||||||||+|+.++ +|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||+
T Consensus 86 ~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~ 165 (531)
T PLN02161 86 SSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISE 165 (531)
T ss_pred cccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHH
Confidence 5678899999999999999764 899999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHH
Q 009162 146 CGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNF 225 (541)
Q Consensus 146 ~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF 225 (541)
+|||||||||||||||||||+|+||||+||++++++||||+||||+|+||+||||||||++||++||||+|+|+|||+||
T Consensus 166 ~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SF 245 (531)
T PLN02161 166 AGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSF 245 (531)
T ss_pred cCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCC
Q 009162 226 RDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASN 305 (541)
Q Consensus 226 ~~~f~~~~g~~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~ 305 (541)
|++|++|++++|+||+|||||||||||||||+.+|+|+| |||||||||||||+++||++|+++|||+||++||+|||.
T Consensus 246 r~~F~~~~~~~I~eI~VGlGP~GELRYPSYp~~~g~w~f--PGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~ 323 (531)
T PLN02161 246 STKFEPYIGNVIEEISIGLGPSGELRYPAHPSGDGRWKF--PGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGC 323 (531)
T ss_pred HHHHHHHhcCceEEEEeccccCccccCCCCcCcCCCccC--CCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcc
Confidence 999999999999999999999999999999999888999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcC------CCceEEEEEcceeccCCCCCChh
Q 009162 306 LMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRG------TRVNTSAKVGGIHWHYGTPSHPS 379 (541)
Q Consensus 306 Yn~~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~------~~v~l~aKV~GIHWwy~t~SHaA 379 (541)
||+.|++|+||++++|+|+|+||||||+|||++|++||||||++|+.+|++ ++|+|+||||||||||+|+||||
T Consensus 324 Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaA 403 (531)
T PLN02161 324 YNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPA 403 (531)
T ss_pred cCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchh
Confidence 999999999999877899999999999999999999999999999999974 68999999999999999999999
Q ss_pred hhcccccCCCCCCChHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChH
Q 009162 380 ELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDA 459 (541)
Q Consensus 380 ElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~ 459 (541)
||||||||+++||||.|||+|||||+|+|+||||||+|.||| +++.|+||+||+||+++|+++||+|+|||||+|||..
T Consensus 404 ElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~-~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~ 482 (531)
T PLN02161 404 ELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETP-EKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEM 482 (531)
T ss_pred hhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCC-ccccCCHHHHHHHHHHHHHHcCCceeecccccccChh
Confidence 999999999999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCC
Q 009162 460 AFQQVIKMSKFYSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGS 510 (541)
Q Consensus 460 ~~~qi~~~~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 510 (541)
+|+||++|++.. ...+|.+||||||+++||+++||++|++|||+||++
T Consensus 483 ~~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~ 530 (531)
T PLN02161 483 GLRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSAD 530 (531)
T ss_pred HHHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCC
Confidence 999999998432 124688999999999999999999999999999985
No 5
>PLN02905 beta-amylase
Probab=100.00 E-value=2.8e-186 Score=1480.41 Aligned_cols=433 Identities=37% Similarity=0.729 Sum_probs=420.5
Q ss_pred CCCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 71 GRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 71 ~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
....+||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 260 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKl 339 (702)
T PLN02905 260 AGTPYVPVYVMLPLGVINMKCELADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKL 339 (702)
T ss_pred cCCCceeEEEEeecceecCCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009162 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (541)
Q Consensus 151 ~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~ 230 (541)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 340 qvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 419 (702)
T PLN02905 340 QVVMSFHECGGNVGDDVCIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFD 419 (702)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-ceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCC
Q 009162 231 PLLGA-IITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQD 309 (541)
Q Consensus 231 ~~~g~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~ 309 (541)
+||++ +|+||+|||||||||||||||+.. +|+| |||||||||||||+++||++|+++|||+||+ ||+|+|+||++
T Consensus 420 ~fl~~g~I~eI~VGLGPaGELRYPSYp~s~-GW~f--PGiGEFQCYDKymla~Lk~aA~a~GhpeWG~-gP~dAG~YN~~ 495 (702)
T PLN02905 420 EFFEDGVISMVEVGLGPCGELRYPSCPVKH-GWRY--PGIGEFQCYDQYLLKSLRKAAEARGHLFWAR-GPDNTGSYNSQ 495 (702)
T ss_pred HHhcCCceEEEEeccCCCccccCCCCcCcC-CCCC--CCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCCCccCCC
Confidence 99986 999999999999999999999987 5999 9999999999999999999999999999998 89999999999
Q ss_pred CCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCC
Q 009162 310 PEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTS 389 (541)
Q Consensus 310 P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~ 389 (541)
|++|+||++ +|+|+|+||||||+|||++|++||||||++|+.+|++ ++|+||||||||||+|+||||||||||||++
T Consensus 496 P~~TgFF~~-~Gsw~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~g--~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~ 572 (702)
T PLN02905 496 PHETGFFCD-GGDYDGYYGRFFLNWYSQVLVDHGDRVLSLAKLAFEG--TCIAAKLPGVHWWYKTASHAAELTAGFYNPC 572 (702)
T ss_pred CCCCCCCCC-CCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchHhhccccccCC
Confidence 999999997 5899999999999999999999999999999999975 6999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCcEEEEeecccccCCcCC--CCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHh
Q 009162 390 TRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQ--MNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKM 467 (541)
Q Consensus 390 ~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~--~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~ 467 (541)
+||||.|||+|||||+|+|+||||||+|.+||+ ++++|+||+||+||+++||++||+|+|||||++||.++|+||+++
T Consensus 573 ~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~n 652 (702)
T PLN02905 573 NRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEALGDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILEN 652 (702)
T ss_pred CcccHHHHHHHHHHcCCeEEEEecccccCCCCCccccccCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHH
Confidence 999999999999999999999999999999983 388999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCC
Q 009162 468 SKFYSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGS 510 (541)
Q Consensus 468 ~~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~ 510 (541)
+++++++...+|++||||||++.||+++||++|++|||+||++
T Consensus 653 a~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~M~~~ 695 (702)
T PLN02905 653 AKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKRMHGE 695 (702)
T ss_pred hhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHHhccc
Confidence 9877655556799999999999999999999999999999987
No 6
>PLN02705 beta-amylase
Probab=100.00 E-value=9.6e-185 Score=1465.29 Aligned_cols=433 Identities=32% Similarity=0.589 Sum_probs=421.0
Q ss_pred CCCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 71 GRRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 71 ~~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
...++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||
T Consensus 242 ~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 321 (681)
T PLN02705 242 TETFYVPVYVMLAVGIINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKL 321 (681)
T ss_pred CCCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009162 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (541)
Q Consensus 151 ~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~ 230 (541)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|||++|+
T Consensus 322 qvVmSFHqCGGNVGD~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~ 401 (681)
T PLN02705 322 QVVMAFHEYGGNASGNVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFD 401 (681)
T ss_pred EEEEEeeccCCCCCCcccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcC-ceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCC
Q 009162 231 PLLGA-IITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQD 309 (541)
Q Consensus 231 ~~~g~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~ 309 (541)
+||++ +|+||+|||||||||||||||+.. +|+| |||||||||||||+++||++|+++||++||+ ||+|+|+||++
T Consensus 402 ~fl~~g~I~eI~VGLGP~GELRYPSYp~~~-gW~f--PGiGEFQCYDkymla~Lk~aA~a~GhpeWG~-gP~dAg~YN~~ 477 (681)
T PLN02705 402 DLFVEGLITAVEIGLGASGELKYPSFPERM-GWIY--PGIGEFQCYDKYSQQNLRKAAKSRGHSFWAR-GPDNAGQYNSR 477 (681)
T ss_pred HhccCCceeEEEeccCCCccccCCCCcccC-CCCC--CCcceeeeccHHHHHHHHHHHHHhCcHhhcc-CCCCccccCCC
Confidence 99976 999999999999999999999987 5999 9999999999999999999999999999997 89999999999
Q ss_pred CCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCC
Q 009162 310 PEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTS 389 (541)
Q Consensus 310 P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~ 389 (541)
|++|+||++ +|+|+|+||||||+|||++|++||||||++|+.+|++ ++|+||||||||||+|+||||||||||||++
T Consensus 478 P~~tgFF~~-~G~w~S~YGkFFLsWYS~~Ll~HGDrVLs~A~~vF~~--~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~ 554 (681)
T PLN02705 478 PHETGFFCE-RGDYDSYYGRFFLHWYSQLLIDHADNVLSLANLAFEE--TKIIVKIPAVYWWYKTASHAAELTAGYYNPT 554 (681)
T ss_pred CCCCCCCCC-CCCcccccchHHHHHHHHHHHHHHHHHHHHHHHhcCC--CeEEEEeccccccCCCCCchhhhccccccCC
Confidence 999999998 4789999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhhcCcEEEEeecccccCCc-CCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhh
Q 009162 390 TRDGFLPIARIFGRYGFTLCCSCFEMRDVDE-KQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMS 468 (541)
Q Consensus 390 ~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eq-p~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~ 468 (541)
+||||.|||+|||||+|+|+|||+||+|.++ | .+++|+||+||+||+++|+++||+|+|||||++||.++|+||++|+
T Consensus 555 ~rDGY~pIa~mfarh~~~l~FTC~eMe~~d~~~-~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na 633 (681)
T PLN02705 555 NQDGYSPVFETLKKHSVTVKFVCSGLQMSPNEN-DEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIA 633 (681)
T ss_pred CcccHHHHHHHHHHcCceEEEEeccccccCCCC-CccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHh
Confidence 9999999999999999999999999999997 6 7899999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCcceeeEecCCccccCCcChHHHHHHHHHhhCCc
Q 009162 469 KFYSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRFVRQLSGSS 511 (541)
Q Consensus 469 ~~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~FVr~m~~~~ 511 (541)
++++++...+|++||||||++.||+++||++|++|||+||++.
T Consensus 634 ~~~~~~~~~~~~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~ 676 (681)
T PLN02705 634 KPRNHPDHYHFSFFVYQQPSPLVQGTTCFPELDYFIKCMHGDI 676 (681)
T ss_pred cccCCCcccceeeeEEecCchHhcCcccHHHHHHHHHHhcccc
Confidence 8877666678999999999999999999999999999999764
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=3.2e-165 Score=1279.24 Aligned_cols=393 Identities=51% Similarity=0.973 Sum_probs=335.0
Q ss_pred EEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 79 FVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 79 ~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
|||||||+|++++.++ +|+++|++||++||||||||||||+||+++|++|||++|++|++|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCcee
Q 009162 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (541)
Q Consensus 159 CGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~ 238 (541)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| ||++||| +|+|+|||+|||++|++|+ ++|+
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~-~~I~ 148 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL-STIT 148 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH-TGEE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH-hhhe
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 9999
Q ss_pred EEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHH------HhcccccCCCCCCCCCCCCCCCCC
Q 009162 239 GVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAR------EIGMREWGDGGPIGASNLMQDPEH 312 (541)
Q Consensus 239 eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~------~~gn~~WG~~gP~~ag~Yn~~P~~ 312 (541)
||+|||||||||||||||+.+| |+| |||||||||||||+++||++|+ +.+|++||++||+++ ||++|++
T Consensus 149 ~I~vglGP~GELRYPSy~~~~g-w~~--pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~ 223 (402)
T PF01373_consen 149 EIQVGLGPAGELRYPSYPESDG-WRF--PGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPED 223 (402)
T ss_dssp EEEE--SGGGBSS-S-S-GGGT-B-T--TS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGG
T ss_pred EEEeccCCcceeccCCCCCCCC-CcC--CCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCC
Confidence 9999999999999999999986 999 9999999999999999999999 577999999999999 9999999
Q ss_pred CCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCC-CceEEEEEcceeccCC--CCCChhhhcccccCCC
Q 009162 313 TEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGT-RVNTSAKVGGIHWHYG--TPSHPSELTAGYYNTS 389 (541)
Q Consensus 313 t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~-~v~l~aKV~GIHWwy~--t~SHaAElTAGyYNt~ 389 (541)
|+||++ +|+|+|+||||||+|||++|++||||||++|+.+|+++ +|+|++|||||||||+ |+||||||||||||
T Consensus 224 t~fF~~-~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN-- 300 (402)
T PF01373_consen 224 TGFFRD-NGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN-- 300 (402)
T ss_dssp STTTST-TCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S---
T ss_pred CCCccc-CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC--
Confidence 999998 57999999999999999999999999999999999998 9999999999999999 88999999999999
Q ss_pred CCCChHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhc
Q 009162 390 TRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSK 469 (541)
Q Consensus 390 ~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~ 469 (541)
|+|||+|||||+|+|+||||||+|.+++ +.+|+||+||+||+++|+++||+|+|||||++||+++|+||+++++
T Consensus 301 ----Y~~Ia~mf~kh~~~l~fTClEM~d~~~~--p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~ 374 (402)
T PF01373_consen 301 ----YSPIARMFKKHGVTLNFTCLEMRDSEEQ--PEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAK 374 (402)
T ss_dssp ----SHHHHHHHHTTT-EEEES-TT--GGSGS--CGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHcCcEEEEEeccccCCCCC--CCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhh
Confidence 9999999999999999999999999443 2368999999999999999999999999999999999999999985
Q ss_pred ccCCCCCCCcceeeEecCCccccCCcChHHHHHH
Q 009162 470 FYSEGLEKPSFSFNFLRMDKNMFEYHNWVRFTRF 503 (541)
Q Consensus 470 ~~~~~~~~~~~~FTylRm~~~lf~~~n~~~F~~F 503 (541)
.. +.. +||||||++.||+++||++|++|
T Consensus 375 ~~--~~~----gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 375 GY--NYS----GFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp HT--TTT----SEEES-HCHHHHSHHHHHHHHHH
T ss_pred cc--CCC----CeEEEccChHhcCcccHHhccCC
Confidence 43 333 69999999999999999999998
No 8
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.85 E-value=5.3e-21 Score=197.15 Aligned_cols=215 Identities=20% Similarity=0.302 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeE-EeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCCh
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEV-WWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQ 173 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~ 173 (541)
+.+.|+++|+.||++|++-|.+.+ -|..+||+ ||+|||+.+++++++++++|||| ||+ +.+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~ydF~~lD~~l~~a~~~Gi~v--iL~----------~~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYDFSWLDRVLDLAAKHGIKV--ILG----------TPTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB---HHHHHHHHHHHCTT-EE--EEE----------ECTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeeecHHHHHHHHHHHhccCeE--EEE----------eccccccc
Confidence 458899999999999999999865 59999998 99999999999999999999998 787 55677899
Q ss_pred hhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCC----chHHHHHHHHHHHHHHhhhhcCceeEEEecccCCCc
Q 009162 174 WVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRS----PIQAYTDFMRNFRDTFRPLLGAIITGVQVGMGPAGE 249 (541)
Q Consensus 174 WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRT----piq~Y~dfm~sF~~~f~~~~g~~I~eI~VGlGP~GE 249 (541)
|+.+ ++||++.+|++|.+. ..++|. ..+.|+++++.|.++++..++
T Consensus 75 Wl~~---~~Pe~~~~~~~g~~~------------~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~--------------- 124 (374)
T PF02449_consen 75 WLYD---KYPEILPVDADGRRR------------GFGSRQHYCPNSPAYREYARRFIRALAERYG--------------- 124 (374)
T ss_dssp HHHC---CSGCCC-B-TTTSBE------------ECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT---------------
T ss_pred chhh---hcccccccCCCCCcC------------ccCCccccchhHHHHHHHHHHHHHHHHhhcc---------------
Confidence 9987 799999999999875 223332 468899999999999999887
Q ss_pred CCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHH------hcccccCCCCCCCCCCCCC-----CCCCCCcccC
Q 009162 250 LRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACARE------IGMREWGDGGPIGASNLMQ-----DPEHTEFFRT 318 (541)
Q Consensus 250 LRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~------~gn~~WG~~gP~~ag~Yn~-----~P~~t~FF~~ 318 (541)
.+|... +|+++ +++|-..||++.+++.|++++++ ++|.+||+. +|+.+|++ +|..+....+
T Consensus 125 ----~~p~vi-~~~i~-NE~~~~~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~--~ws~~~~~f~~v~~P~~~~~~~~ 196 (374)
T PF02449_consen 125 ----DHPAVI-GWQID-NEPGYHRCYSPACQAAFRQWLKEKYGTIEALNRAWGTA--FWSQRYSSFDEVPPPRPTSSPEN 196 (374)
T ss_dssp ----TTTTEE-EEEEC-CSTTCTS--SHHHHHHHHHHHHHHHSSHHHHHHHHTTT--GGG---SSGGG---S-S-SS---
T ss_pred ----ccceEE-EEEec-cccCcCcCCChHHHHHHHHHHHHHhCCHHHHHHHHcCC--cccCccCcHHhcCCCCCCCCCCC
Confidence 677666 48886 88876689999999999999995 789999997 88888887 5655553333
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcce
Q 009162 319 DNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGI 368 (541)
Q Consensus 319 ~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GI 368 (541)
+ ....+|-+|..+ .+.+....+.+..+++- .+..|..+.-+.
T Consensus 197 ~--~~~~D~~rF~~~----~~~~~~~~~~~~ir~~~--p~~~vt~n~~~~ 238 (374)
T PF02449_consen 197 P--AQWLDWYRFQSD----RVAEFFRWQADIIREYD--PDHPVTTNFMGS 238 (374)
T ss_dssp H--HHHHHHHHHHHH----HHHHHHHHHHHHHHHHS--TT-EEE-EE-TT
T ss_pred h--HHHHHHHHHHHH----HHHHHHHHHHHHHHHhC--CCceEEeCcccc
Confidence 2 444555555544 44455555555555443 456788887776
No 9
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=6.6e-14 Score=155.76 Aligned_cols=203 Identities=21% Similarity=0.344 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eEEeeecccCCCcccccchHHHH-HHHHHhCCCcEEEEEeeecCCCCCCCC-CcCCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVV-EVWWGVVERDRPGVYDWRGYFDL-IVLASNCGLKVRALLAFHQCGSGPGDP-KWVPL 171 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~vmsFHqCGGNVGD~-~~IpL 171 (541)
+++.|+.+|++||++|++.|++ .+-|+.+|++ .|+|||++.++. ++++++.||++ ||+ + ++-..
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~~~D~~~l~~a~~~Gl~v--il~----------t~P~g~~ 94 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFTWLDEIFLERAYKAGLYV--ILR----------TGPTGAP 94 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcccchHHHHHHHHhcCceE--EEe----------cCCCCCC
Confidence 5589999999999999999999 5559999998 999999999999 99999999999 998 5 56678
Q ss_pred ChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCC---c-hHHHHHHHHHHHHHHhhh-hcCceeEEEecccC
Q 009162 172 PQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRS---P-IQAYTDFMRNFRDTFRPL-LGAIITGVQVGMGP 246 (541)
Q Consensus 172 P~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRT---p-iq~Y~dfm~sF~~~f~~~-~g~~I~eI~VGlGP 246 (541)
|.|+.+ ++|+|+.+|+.|.+. .+.+|. | ...|+++.+...+..+++ ++
T Consensus 95 P~Wl~~---~~PeiL~~~~~~~~~------------~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~------------ 147 (673)
T COG1874 95 PAWLAK---KYPEILAVDENGRVR------------SDGARENICPVSPVYREYLDRILQQIRERLYG------------ 147 (673)
T ss_pred chHHhc---CChhheEecCCCccc------------CCCcccccccccHHHHHHHHHHHHHHHHHHhc------------
Confidence 999998 799999999998866 677774 2 236999999888888888 66
Q ss_pred CCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHH------hcccccCCCCCCCCCCCCC-----CCCCCCc
Q 009162 247 AGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACARE------IGMREWGDGGPIGASNLMQ-----DPEHTEF 315 (541)
Q Consensus 247 ~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~------~gn~~WG~~gP~~ag~Yn~-----~P~~t~F 315 (541)
-.|... +|+.+ ++.|.--||++++++.|+.|+++ ..|.+|++. +|+++|.+ .|. .|
T Consensus 148 -------~~~~v~-~w~~d-neY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~--~ws~t~~~~~~i~~p~--~~ 214 (673)
T COG1874 148 -------NGPAVI-TWQND-NEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTS--FWSHTYKDFDEIMSPN--PF 214 (673)
T ss_pred -------cCCcee-EEEcc-CccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhh--hcccccccHHhhcCCC--Cc
Confidence 556554 69997 88888789999999999999996 569999997 89999987 333 11
Q ss_pred ccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 009162 316 FRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIF 354 (541)
Q Consensus 316 F~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F 354 (541)
=..+.-+-.++|-+|..+= .++-.++....++..|
T Consensus 215 ~e~~~~~~~ld~~~f~~e~----~~~~~~~~~~~~~~~~ 249 (673)
T COG1874 215 GELPLPGLYLDYRRFESEQ----ILEFVREEGEAIKAYF 249 (673)
T ss_pred cccCCccchhhHhhhhhhh----hHHHHHHHHHHHHHhC
Confidence 1122113337888887654 5555666666677777
No 10
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.72 E-value=3.4e-08 Score=101.80 Aligned_cols=76 Identities=28% Similarity=0.455 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccch---HHHHHHHHHhCCCcEEEEEee--ecCCCCCCCCCcC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG---YFDLIVLASNCGLKVRALLAF--HQCGSGPGDPKWV 169 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~---Y~~l~~mv~~~GLKv~~vmsF--HqCGGNVGD~~~I 169 (541)
.++.|+..|++||++|++.|.+.|.|...|++ ||+|||++ .++++++|+++||+| |+.+ -.|+ ...+=
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~a----E~~~g 94 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICA----EWDNG 94 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---T----TBGGG
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEE--Eecccceecc----cccch
Confidence 48899999999999999999999999999998 99999997 679999999999998 6653 2333 11112
Q ss_pred CCChhhHh
Q 009162 170 PLPQWVLE 177 (541)
Q Consensus 170 pLP~WV~~ 177 (541)
-||.||.+
T Consensus 95 G~P~Wl~~ 102 (319)
T PF01301_consen 95 GLPAWLLR 102 (319)
T ss_dssp G--GGGGG
T ss_pred hhhhhhhc
Confidence 28999987
No 11
>PLN03059 beta-galactosidase; Provisional
Probab=98.38 E-value=3.5e-06 Score=96.64 Aligned_cols=106 Identities=17% Similarity=0.368 Sum_probs=81.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHH---HHHHHHHhCCCcEEEEEeeecCCCCCCCCCc-C
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYF---DLIVLASNCGLKVRALLAFHQCGSGPGDPKW-V 169 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~---~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~-I 169 (541)
..++.|+.-|++||++|++.|.+-|.|..-|++ ||+|||++=. +.+++|++.||.|++=..=.-|+ .-+ =
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcA-----Ew~~G 129 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICA-----EWNFG 129 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceee-----eecCC
Confidence 468999999999999999999999999999998 9999999865 45789999999994433333332 111 1
Q ss_pred CCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 009162 170 PLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL 233 (541)
Q Consensus 170 pLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~ 233 (541)
-||.|+.+ +|+|.+ ||.-+.|.+.|+.|-+++.+.+
T Consensus 130 GlP~WL~~----~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 130 GFPVWLKY----VPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred CCchhhhc----CCCccc------------------------ccCCHHHHHHHHHHHHHHHHHH
Confidence 29999976 355433 3445888888888888888776
No 12
>TIGR03356 BGL beta-galactosidase.
Probab=97.97 E-value=2.3e-05 Score=83.99 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=91.1
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
.......++.+|+.||++|++.+.+.+=|..+||+|++++| ++.|+++++.++++||+..|.|. |
T Consensus 49 a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H----------- 116 (427)
T TIGR03356 49 ACDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H----------- 116 (427)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------
Confidence 45678899999999999999999999999999999888888 79999999999999999977766 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc--CceeEEEe
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLG--AIITGVQV 242 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g--~~I~eI~V 242 (541)
..+|.|+.+. .|-.+ +.-++.|.+|.+...++|.+... .||.|..+
T Consensus 117 fd~P~~l~~~------------gGw~~----------------~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 117 WDLPQALEDR------------GGWLN----------------RDTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CCccHHHHhc------------CCCCC----------------hHHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 5589998651 23322 33468899999999999998654 37778765
No 13
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.79 E-value=0.0013 Score=65.48 Aligned_cols=192 Identities=17% Similarity=0.311 Sum_probs=106.1
Q ss_pred eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccce
Q 009162 120 WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYI 199 (541)
Q Consensus 120 WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~L 199 (541)
|+.+|++ +|+|||+..+++++.++++|++++.-..+..+ ..|.|+.+.. .
T Consensus 3 W~~~ep~-~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~~~~---------------~---- 52 (254)
T smart00633 3 WDSTEPS-RGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVFNLS---------------K---- 52 (254)
T ss_pred cccccCC-CCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhhcCC---------------H----
Confidence 8999997 99999999999999999999998653333221 3689986421 0
Q ss_pred ecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHH
Q 009162 200 SLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYM 279 (541)
Q Consensus 200 Slg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~ 279 (541)
..-.+...+|++....+|+ +.|..++|.=-|-.+= -+.+... .|. +.+| .+|+
T Consensus 53 ------------~~~~~~~~~~i~~v~~ry~----g~i~~wdV~NE~~~~~-~~~~~~~--~w~---~~~G-----~~~i 105 (254)
T smart00633 53 ------------ETLLARLENHIKTVVGRYK----GKIYAWDVVNEALHDN-GSGLRRS--VWY---QILG-----EDYI 105 (254)
T ss_pred ------------HHHHHHHHHHHHHHHHHhC----CcceEEEEeeecccCC-Ccccccc--hHH---HhcC-----hHHH
Confidence 0123445555555555554 4455555554333210 0001111 243 4455 3788
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 009162 280 LASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRV 359 (541)
Q Consensus 280 ~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v 359 (541)
...|+.+.+. .| ++..|-|+ |+..-+. .+.++++...+.+... ++
T Consensus 106 ~~af~~ar~~---------~P-----------~a~l~~Nd---y~~~~~~-----------~k~~~~~~~v~~l~~~-g~ 150 (254)
T smart00633 106 EKAFRYAREA---------DP-----------DAKLFYND---YNTEEPN-----------AKRQAIYELVKKLKAK-GV 150 (254)
T ss_pred HHHHHHHHHh---------CC-----------CCEEEEec---cCCcCcc-----------HHHHHHHHHHHHHHHC-CC
Confidence 8888866542 12 13333331 2211110 2344666666666542 34
Q ss_pred eEEEEEcceeccCCCCCChhhhcccccCCCCCCChHHHHHHHhhcCcEEEEeeccccc
Q 009162 360 NTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRD 417 (541)
Q Consensus 360 ~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~fTClEM~d 417 (541)
+|-+ =|++++..... .+-+....+++.|++.|..+.+|=++++.
T Consensus 151 ~iDg--iGlQ~H~~~~~------------~~~~~~~~~l~~~~~~g~pi~iTE~dv~~ 194 (254)
T smart00633 151 PIDG--IGLQSHLSLGS------------PNIAEIRAALDRFASLGLEIQITELDISG 194 (254)
T ss_pred ccce--eeeeeeecCCC------------CCHHHHHHHHHHHHHcCCceEEEEeecCC
Confidence 4322 13444332111 11234668888888899999999877764
No 14
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.56 E-value=0.00013 Score=78.52 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=84.2
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC-Ccccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-PGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
......++.+|+.||++|++...+.+=|..|+|+| .+++| +..|+++++.++++||+..|.|. |
T Consensus 54 ~d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H----------- 121 (455)
T PF00232_consen 54 CDHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H----------- 121 (455)
T ss_dssp TGHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------
T ss_pred ccchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------
Confidence 47788999999999999999999999999999998 78888 99999999999999999977765 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEE
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQ 241 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~ 241 (541)
-.||.|+.+.| |-. .|.-++.|.+|.+-..++|.++..- ||.|..
T Consensus 122 ~~~P~~l~~~g------------gw~----------------~~~~~~~F~~Ya~~~~~~~gd~V~~w~T~NEp~ 168 (455)
T PF00232_consen 122 FDLPLWLEDYG------------GWL----------------NRETVDWFARYAEFVFERFGDRVKYWITFNEPN 168 (455)
T ss_dssp S--BHHHHHHT------------GGG----------------STHHHHHHHHHHHHHHHHHTTTBSEEEEEETHH
T ss_pred cccccceeecc------------ccc----------------CHHHHHHHHHHHHHHHHHhCCCcceEEeccccc
Confidence 66999998742 222 2446789999999999999997652 555544
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.49 E-value=0.00039 Score=67.34 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecc-cCCCc---ccccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVE-RDRPG---VYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE-~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
..+++++.||++|++-|++.+.|...+ +..+. .--|..++++++.++++||+| |+.+|.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~ 84 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN 84 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc
Confidence 789999999999999999999995554 44333 345788999999999999999 899996
No 16
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.0016 Score=73.28 Aligned_cols=84 Identities=27% Similarity=0.554 Sum_probs=63.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHH---HHHHhCCCcEEEEEe---eecCCCCCCCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLI---VLASNCGLKVRALLA---FHQCGSGPGDPK 167 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~---~mv~~~GLKv~~vms---FHqCGGNVGD~~ 167 (541)
..++.|+.-|+++|++|.++|.+-|+|..-|+. ||+|||++=.+|+ .+|+++||=| +|- |=+--.|-|.
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~GG-- 120 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFGG-- 120 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCCC--
Confidence 467899999999999999999999999999998 9999999977665 5778888877 554 1112233332
Q ss_pred cCCCChhhHhhhhcCCCceeeC
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSD 189 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD 189 (541)
||.|+.. -|.|.|..
T Consensus 121 ---~P~wL~~----~pg~~~Rt 135 (649)
T KOG0496|consen 121 ---LPWWLRN----VPGIVFRT 135 (649)
T ss_pred ---cchhhhh----CCceEEec
Confidence 8867655 46766643
No 17
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=97.28 E-value=0.0012 Score=72.25 Aligned_cols=113 Identities=12% Similarity=0.159 Sum_probs=92.0
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC----CcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR----PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
.......++.+++.||++|++...+.+=|..|+|.| +++-.++.|+++++.++++|++..|-|. |
T Consensus 64 A~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~-H---------- 132 (477)
T PRK15014 64 AVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS-H---------- 132 (477)
T ss_pred ccCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C----------
Confidence 346778999999999999999999999999999975 4677899999999999999999966665 3
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQVG 243 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~VG 243 (541)
-.||.|+.+. + .|- ..|.-++.|.+|.+-..++|.+...- ||.|+.+-
T Consensus 133 -~dlP~~L~~~---y--------GGW----------------~n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 133 -FEMPLHLVQQ---Y--------GSW----------------TNRKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred -CCCCHHHHHh---c--------CCC----------------CChHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 6699999652 1 121 12345789999999999999998764 89998754
No 18
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=97.28 E-value=0.0011 Score=72.39 Aligned_cols=112 Identities=13% Similarity=0.235 Sum_probs=92.2
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC----CcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR----PGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~----p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
.......++.+++.||++|++...+.+=|..++|+| +++-.++.|+++++-++++|++..|.|. |
T Consensus 66 A~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~-H---------- 134 (474)
T PRK09852 66 AIDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC-H---------- 134 (474)
T ss_pred cCchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee-C----------
Confidence 457788999999999999999999999999999975 4788899999999999999999977777 3
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
-.||.|+.+. . .| +..|..++.|.+|.+-..++|.+...- ||.|..|
T Consensus 135 -~~~P~~l~~~---~--------GG----------------W~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn~ 183 (474)
T PRK09852 135 -FDVPMHLVTE---Y--------GS----------------WRNRKMVEFFSRYARTCFEAFDGLVKYWLTFNEINI 183 (474)
T ss_pred -CCCCHHHHHh---c--------CC----------------CCCHHHHHHHHHHHHHHHHHhcCcCCeEEeecchhh
Confidence 5699998651 0 11 122446788999999999999998764 7888764
No 19
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.97 E-value=0.0023 Score=69.69 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=91.8
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc---ccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---DWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
........+.+++.||++|++.-...+=|..|+|+|+++. -+..|++|++-++++|++-.|.|- |
T Consensus 49 a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 116 (469)
T PRK13511 49 ASDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H----------- 116 (469)
T ss_pred ccchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 4578899999999999999999999999999999876544 578899999999999999966665 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQVG 243 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~VG 243 (541)
..||.|+.+ +.|-.| |.-++.|.+|.+-..++|.+ ... ||.|..+-
T Consensus 117 ~dlP~~L~~------------~GGW~n----------------~~~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~~ 164 (469)
T PRK13511 117 FDTPEALHS------------NGDWLN----------------RENIDHFVRYAEFCFEEFPE-VKYWTTFNEIGPI 164 (469)
T ss_pred CCCcHHHHH------------cCCCCC----------------HHHHHHHHHHHHHHHHHhCC-CCEEEEccchhhh
Confidence 779999965 223333 33578999999999999999 875 88887653
No 20
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.96 E-value=0.0053 Score=64.63 Aligned_cols=200 Identities=14% Similarity=0.273 Sum_probs=120.7
Q ss_pred eEEEeEE---eeecccCCCcccccchHHHHHHHHHhCCCcEE--EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCcee
Q 009162 113 GVVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR--ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY 187 (541)
Q Consensus 113 GV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~--~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~y 187 (541)
.+-+++| |..+|++ +|+|+|..=+++++.||++||+++ ..+.- -..|.|+..
T Consensus 59 n~iTpenemKwe~i~p~-~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~------------~q~P~W~~~---------- 115 (345)
T COG3693 59 NQITPENEMKWEAIEPE-RGRFNFEAADAIANFARKHNMPLHGHTLVWH------------SQVPDWLFG---------- 115 (345)
T ss_pred cccccccccccccccCC-CCccCccchHHHHHHHHHcCCeeccceeeec------------ccCCchhhc----------
Confidence 3456666 9999996 999999999999999999999763 22221 246788754
Q ss_pred eCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEecccCCCcCCCCCCCCCCCCCccc
Q 009162 188 SDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQVGMGPAGELRYPSLPSQKLMWSWR 265 (541)
Q Consensus 188 tD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~VGlGP~GELRYPSyp~~~g~W~~~ 265 (541)
|+ +.+---.+++++....-..+|...+.+ ||.|+- --.| ++.+. .|..
T Consensus 116 -~e------------------~~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~v-dd~g-------~~R~s--~w~~- 165 (345)
T COG3693 116 -DE------------------LSKEALAKMVEEHIKTVVGRYKGSVASWDVVNEAV-DDQG-------SLRRS--AWYD- 165 (345)
T ss_pred -cc------------------cChHHHHHHHHHHHHHHHHhccCceeEEEeccccc-CCCc-------hhhhh--hhhc-
Confidence 11 112224577888877777777765443 666652 2222 55554 4776
Q ss_pred CCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcccCCCCCccccchhhHHHHHHHHHHHHHHH
Q 009162 266 SRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWNTAYGNFFLEWYSGMLLLHGER 345 (541)
Q Consensus 266 ~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~~g~~~s~YGrFFL~WYs~~Li~Hgdr 345 (541)
.+.|. +|+..+|+.+.+ +.|+----||+--.+ +.. .|.+-
T Consensus 166 -~~~gp-----d~I~~aF~~Are---------adP~AkL~~NDY~ie-------~~~------------------~kr~~ 205 (345)
T COG3693 166 -GGTGP-----DYIKLAFHIARE---------ADPDAKLVINDYSIE-------GNP------------------AKRNY 205 (345)
T ss_pred -cCCcc-----HHHHHHHHHHHh---------hCCCceEEeeccccc-------CCh------------------HHHHH
Confidence 78887 999999998887 344332223321100 111 22333
Q ss_pred HHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCCCCCChHHHHHHHhhcCcEEEEeecccccCCcC
Q 009162 346 ICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEK 421 (541)
Q Consensus 346 IL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp 421 (541)
++.+-+..-. . +++|-|| +..|| ++-+ ++...++-..+ .-|.+-|+.+..|=|+|++-. |
T Consensus 206 ~~nlI~~Lke-k----G~pIDgi----G~QsH---~~~~--~~~~~~~~~a~-~~~~k~Gl~i~VTELD~~~~~-P 265 (345)
T COG3693 206 VLNLIEELKE-K----GAPIDGI----GIQSH---FSGD--GPSIEKMRAAL-LKFSKLGLPIYVTELDMSDYT-P 265 (345)
T ss_pred HHHHHHHHHH-C----CCCccce----eeeee---ecCC--CCCHHHHHHHH-HHHhhcCCCceEEEeeeeccC-C
Confidence 3333333321 2 3455666 66788 2222 23333333333 444556999999999999976 5
No 21
>PLN02814 beta-glucosidase
Probab=96.93 E-value=0.0036 Score=69.08 Aligned_cols=112 Identities=21% Similarity=0.238 Sum_probs=92.8
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc---chHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW---RGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW---s~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
.......++.+++.||++|++.-...+=|..|+|+|+++.|- ..|++|++-++++|++-.|-|. |
T Consensus 72 a~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H----------- 139 (504)
T PLN02814 72 ASDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H----------- 139 (504)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 457889999999999999999999999999999998877775 6799999999999999976665 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
-.||.|+.+. + .|- ..|..++.|.+|.+--.++|.+...- ||.|..+
T Consensus 140 ~dlP~~L~~~---y--------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~ 188 (504)
T PLN02814 140 YDLPQSLEDE---Y--------GGW----------------INRKIIEDFTAFADVCFREFGEDVKLWTTINEATI 188 (504)
T ss_pred CCCCHHHHHh---c--------CCc----------------CChhHHHHHHHHHHHHHHHhCCcCCEEEeccccch
Confidence 7799999662 0 122 23456789999999999999998775 7778764
No 22
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=96.92 E-value=0.0038 Score=68.27 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=91.4
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCC----cccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRP----GVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p----~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
.......++.+++.||++|++.-.+.+=|..|+|+|. ++=-...|++|++-++++|++-.|-|. |
T Consensus 62 a~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H---------- 130 (476)
T PRK09589 62 AIDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H---------- 130 (476)
T ss_pred cccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C----------
Confidence 4578889999999999999999999999999999863 334478899999999999999977664 4
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
-.||.|+.+. + .|- ..|.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 131 -~dlP~~L~~~---y--------GGW----------------~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 -FEMPYHLVTE---Y--------GGW----------------RNRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred -CCCCHHHHHh---c--------CCc----------------CChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 7799999652 0 122 22446789999999999999998775 8889765
No 23
>PLN02998 beta-glucosidase
Probab=96.89 E-value=0.0034 Score=69.13 Aligned_cols=112 Identities=20% Similarity=0.270 Sum_probs=92.9
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
.......++.+++.||++|++.-.+.+=|..|+|+|++.+| ...|+++++-++++|++-.|-|. |
T Consensus 77 a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H----------- 144 (497)
T PLN02998 77 ACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H----------- 144 (497)
T ss_pred cccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------
Confidence 45788999999999999999999999999999999877765 67899999999999999966665 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
-.||.|+.+. . .|- ..|.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 145 ~dlP~~L~~~---y--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 145 FDLPQALEDE---Y--------GGW----------------LSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCCHHHHHh---h--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 7799999662 0 122 23456799999999999999998765 7888764
No 24
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.83 E-value=0.0048 Score=67.35 Aligned_cols=111 Identities=13% Similarity=0.149 Sum_probs=91.1
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
-.......++.+++.||++|++.-...+=|..++|.|++++| ...|++|++-++++|++-.|-|- |
T Consensus 47 ~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H---------- 115 (467)
T TIGR01233 47 PASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H---------- 115 (467)
T ss_pred ccCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C----------
Confidence 356788999999999999999999999999999999887763 77899999999999999866665 4
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
..||.|+.+. .|-. .|.-++.|.+|.+--.++|.+ ..- ||.|..+
T Consensus 116 -~dlP~~L~~~------------GGW~----------------n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~~ 162 (467)
T TIGR01233 116 -FDTPEALHSN------------GDFL----------------NRENIEHFIDYAAFCFEEFPE-VNYWTTFNEIGP 162 (467)
T ss_pred -CCCcHHHHHc------------CCCC----------------CHHHHHHHHHHHHHHHHHhCC-CCEEEEecchhh
Confidence 6799999651 2222 244678899999988899987 654 8888764
No 25
>PLN02849 beta-glucosidase
Probab=96.82 E-value=0.0045 Score=68.30 Aligned_cols=112 Identities=15% Similarity=0.240 Sum_probs=92.6
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
.......++.+++.||++|++.-...+=|..|+|+|.++.| ...|+++++-++++|++-.|-|. |
T Consensus 74 a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H----------- 141 (503)
T PLN02849 74 ACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H----------- 141 (503)
T ss_pred cccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------
Confidence 45788999999999999999999999999999999876655 66799999999999999966665 4
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEe
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQV 242 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~V 242 (541)
-.||.|+.+. . .|- ..|.-++.|.+|.+--.++|.+...- ||.|..+
T Consensus 142 ~dlP~~L~~~---y--------GGW----------------~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 142 YDHPQYLEDD---Y--------GGW----------------INRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCCcHHHHHh---c--------CCc----------------CCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 7799999662 0 222 23456799999999999999998775 7888764
No 26
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=96.59 E-value=0.0088 Score=65.55 Aligned_cols=113 Identities=14% Similarity=0.222 Sum_probs=91.4
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC-C---cccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-P---GVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p---~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
.......++.+++.||++|++.-...+=|..|+|+| + ++=-...|++|++-++++|++-.|-|- |
T Consensus 68 a~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H---------- 136 (478)
T PRK09593 68 AIDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H---------- 136 (478)
T ss_pred ccchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c----------
Confidence 457889999999999999999999999999999986 3 334478899999999999999976665 4
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEec
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQVG 243 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~VG 243 (541)
-.||.|+.+. + .|- ..|.-++.|.+|.+--.++|.+...- ||.|..+-
T Consensus 137 -~dlP~~L~~~---~--------GGW----------------~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~ 186 (478)
T PRK09593 137 -FDCPMHLIEE---Y--------GGW----------------RNRKMVGFYERLCRTLFTRYKGLVKYWLTFNEINMI 186 (478)
T ss_pred -cCCCHHHHhh---c--------CCC----------------CChHHHHHHHHHHHHHHHHhcCcCCEEEeecchhhh
Confidence 7799999652 0 122 22445789999999999999998765 88887753
No 27
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.027 Score=61.77 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=110.0
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCc-ccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCC
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPG-VYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~ 166 (541)
.........+.+++.||++|++...+.+=|..+-|.+.+ ..| -.-|++|++-+.+.|++..|-|+ |
T Consensus 53 ~a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-H--------- 122 (460)
T COG2723 53 EASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-H--------- 122 (460)
T ss_pred cccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-c---------
Confidence 446778899999999999999999999999999997655 455 55699999999999999977776 4
Q ss_pred CcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEEecc
Q 009162 167 KWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQVGM 244 (541)
Q Consensus 167 ~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~VGl 244 (541)
..+|.|+.+.+ .|- ..|..++.|..|.+--.++|.++..- |.-|+.|=+
T Consensus 123 --fd~P~~L~~~y-----------gGW----------------~nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~ 173 (460)
T COG2723 123 --FDLPLWLQKPY-----------GGW----------------ENRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVV 173 (460)
T ss_pred --cCCcHHHhhcc-----------CCc----------------cCHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhh
Confidence 88999998842 222 23557899999999999999988764 788887755
Q ss_pred cCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHH
Q 009162 245 GPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACARE 289 (541)
Q Consensus 245 GP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~ 289 (541)
. ++-..++|. |++..++-.=+-+--.+-++|++
T Consensus 174 ~---------~~y~~~~~~---p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 174 E---------LGYLYGGHP---PGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred c---------ccccccccC---CCccCHHHHHHHHHHHHHHHHHH
Confidence 4 111222333 67776554444444455555553
No 28
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=95.82 E-value=0.1 Score=54.27 Aligned_cols=210 Identities=22% Similarity=0.367 Sum_probs=125.7
Q ss_pred HHHHHHHcCcceEEEe-EE-eeecccCCCcccccchHHHHHHHHHhCCCcEE--EEEeeecCCCCCCCCCcCCCChhhHh
Q 009162 102 SFKALAAAGVEGVVVE-VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR--ALLAFHQCGSGPGDPKWVPLPQWVLE 177 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vd-VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~--~vmsFHqCGGNVGD~~~IpLP~WV~~ 177 (541)
..+.+-....+.|+.. .. |+.+|+. +|+|||+.-+++++.+++.|++++ +++. |. -.|.||.+
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~~-~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEPE-PGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHESB-TTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcCC-CCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555555667777654 23 9999997 999999999999999999999997 4444 53 36999987
Q ss_pred hhhcCCCceeeCCCCCccccceecccCcccccCCCCc--hHHHHHHHHHHHHHHhhhhcC--ceeEEEe---cccCCC--
Q 009162 178 EIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSP--IQAYTDFMRNFRDTFRPLLGA--IITGVQV---GMGPAG-- 248 (541)
Q Consensus 178 ~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTp--iq~Y~dfm~sF~~~f~~~~g~--~I~eI~V---GlGP~G-- 248 (541)
... + +| -+..++.|+.+.++....+++ .|....| -+...|
T Consensus 93 ~~~-----------~--------------------~~~~~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 93 LAN-----------G--------------------SPDEKEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp STT-----------S--------------------SBHHHHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSS
T ss_pred ccC-----------C--------------------CcccHHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcc
Confidence 300 0 12 246777777777777777763 4444433 122222
Q ss_pred -cCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcccCCCCCccccc
Q 009162 249 -ELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRTDNGLWNTAY 327 (541)
Q Consensus 249 -ELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~~~g~~~s~Y 327 (541)
.||- . .|. .-+| ++|....|+.+-+.. | ....|-| .|+...
T Consensus 142 ~~~r~------~-~~~---~~lG-----~~yi~~aF~~A~~~~---------P-----------~a~L~~N---Dy~~~~ 183 (320)
T PF00331_consen 142 GGLRD------S-PWY---DALG-----PDYIADAFRAAREAD---------P-----------NAKLFYN---DYNIES 183 (320)
T ss_dssp SSBCT------S-HHH---HHHT-----TCHHHHHHHHHHHHH---------T-----------TSEEEEE---ESSTTS
T ss_pred ccccC------C-hhh---hccc-----HhHHHHHHHHHHHhC---------C-----------CcEEEec---cccccc
Confidence 2221 1 132 2344 688888998877643 2 3344555 233222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCCCCCChHHHHHHHhhcCcE
Q 009162 328 GNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIARIFGRYGFT 407 (541)
Q Consensus 328 GrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~ 407 (541)
. .+.++++.+.+.+=. .+|+|-+===--|+..... .+.....++.|+..|+.
T Consensus 184 ~------------~k~~~~~~lv~~l~~-~gvpIdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~ 235 (320)
T PF00331_consen 184 P------------AKRDAYLNLVKDLKA-RGVPIDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLP 235 (320)
T ss_dssp T------------HHHHHHHHHHHHHHH-TTHCS-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSE
T ss_pred h------------HHHHHHHHHHHHHHh-CCCccceechhhccCCCCC---------------HHHHHHHHHHHHHcCCc
Confidence 2 456666666665553 3555443111123322222 34455777788889999
Q ss_pred EEEeecccccCCcC
Q 009162 408 LCCSCFEMRDVDEK 421 (541)
Q Consensus 408 l~fTClEM~d~eqp 421 (541)
+++|=|++.+.+.+
T Consensus 236 i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 236 IHITELDVRDDDNP 249 (320)
T ss_dssp EEEEEEEEESSSTT
T ss_pred eEEEeeeecCCCCC
Confidence 99999999988865
No 29
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=95.77 E-value=0.17 Score=52.68 Aligned_cols=230 Identities=18% Similarity=0.240 Sum_probs=136.6
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEe-e------ecccCC------Ccc-cccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWW-G------VVERDR------PGV-YDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWW-G------iVE~~~------p~~-YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
+..++++++-|+.||++|++.|-++||+ | -+|+.+ +++ -.|.-+..+++.+++.||+|++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 3478999999999999999999999995 3 233321 111 1377899999999999999999884332
Q ss_pred CCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCcee
Q 009162 159 CGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIIT 238 (541)
Q Consensus 159 CGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~ 238 (541)
-..+++... -.-|.|+.. ++|+...+...+.-+.=+|. | ..+.=++|+.+...++...++ |.
T Consensus 95 ~~~~~~~~~-~~~p~~~~~---~~~~~~~~~~~~~~~~~~ln------P------~~PeVr~~i~~~v~Eiv~~Yd--vD 156 (311)
T PF02638_consen 95 NAPDVSHIL-KKHPEWFAV---NHPGWVRTYEDANGGYYWLN------P------GHPEVRDYIIDIVKEIVKNYD--VD 156 (311)
T ss_pred CCCchhhhh-hcCchhhee---cCCCceeecccCCCCceEEC------C------CCHHHHHHHHHHHHHHHhcCC--CC
Confidence 222222211 124667653 45665555544433322444 1 247779999999999887774 77
Q ss_pred EEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCCcccC
Q 009162 239 GVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASLNACAREIGMREWGDGGPIGASNLMQDPEHTEFFRT 318 (541)
Q Consensus 239 eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l~~~a~~~gn~~WG~~gP~~ag~Yn~~P~~t~FF~~ 318 (541)
.|++= --|||. .. +. ||.+..+.|++.- | ..|. . .|++
T Consensus 157 GIhlD-----dy~yp~---~~--~g-----------~~~~~~~~y~~~~---g------~~~~-----~-~~~d------ 194 (311)
T PF02638_consen 157 GIHLD-----DYFYPP---PS--FG-----------YDFPDVAAYEKYT---G------KDPF-----S-SPED------ 194 (311)
T ss_pred eEEec-----cccccc---cc--CC-----------CCCccHHHHHHhc---C------cCCC-----C-Cccc------
Confidence 77653 234442 11 22 3344455565421 1 0110 0 1111
Q ss_pred CCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEEEEcceeccCCCCCChhhhcccccCCCCCCChHHHH
Q 009162 319 DNGLWNTAYGNFFLEWYSGMLLLHGERICREAETIFRGTRVNTSAKVGGIHWHYGTPSHPSELTAGYYNTSTRDGFLPIA 398 (541)
Q Consensus 319 ~~g~~~s~YGrFFL~WYs~~Li~HgdrIL~~A~~~F~~~~v~l~aKV~GIHWwy~t~SHaAElTAGyYNt~~rdGY~~Ia 398 (541)
+ .+.+|=.+.+-+-..+|-+..+++= +.|.+++=..|+ ||.+-.+=|....
T Consensus 195 ~----------~W~~WRr~~I~~~V~~i~~~ik~~k--P~v~~sisp~g~-----------------~~~~y~~~~qD~~ 245 (311)
T PF02638_consen 195 D----------AWTQWRRDNINNFVKRIYDAIKAIK--PWVKFSISPFGI-----------------WNSAYDDYYQDWR 245 (311)
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEeecc-----------------hhhhhhheeccHH
Confidence 0 1677777777777777776666554 567777755444 2233345567777
Q ss_pred HHHhhcCcEEEEe
Q 009162 399 RIFGRYGFTLCCS 411 (541)
Q Consensus 399 ~mf~rh~~~l~fT 411 (541)
.-+++-=++..++
T Consensus 246 ~W~~~G~iD~i~P 258 (311)
T PF02638_consen 246 NWLKEGYIDYIVP 258 (311)
T ss_pred HHHhcCCccEEEe
Confidence 7776544555554
No 30
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=95.33 E-value=0.29 Score=45.34 Aligned_cols=110 Identities=18% Similarity=0.175 Sum_probs=73.7
Q ss_pred HHHHHHHHcCcceEEEeEE--ee------ecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCC
Q 009162 101 QSFKALAAAGVEGVVVEVW--WG------VVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLP 172 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVW--WG------iVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP 172 (541)
+-+..||++||+.|++.+= +| -+-+..|+- .-.-+.++++.+++.|+++.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4567899999999999442 22 122222332 36788999999999999999999955 34
Q ss_pred hhhHhhhhcCCCceeeCCCCCc--cccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 009162 173 QWVLEEIDKDPDLAYSDRFGRR--NMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL 233 (541)
Q Consensus 173 ~WV~~~g~~~pdi~ytD~~G~r--n~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~ 233 (541)
.++.+ ++||=+..|++|+. ..+....+.-.++ +-.-|+||+..-.+++-+.+
T Consensus 70 ~~~~~---~HPeW~~~~~~G~~~~~~~~~~~~~~~~c------~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 70 EDAAE---RHPEWFVRDADGRPMRGERFGYPGWYTCC------LNSPYREFLLEQIREILDRY 123 (132)
T ss_pred hHHHH---hCCceeeECCCCCCcCCCCcCCCCceecC------CCccHHHHHHHHHHHHHHcC
Confidence 55555 89999999999992 2222221111111 22348898888777776654
No 31
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=92.52 E-value=0.37 Score=52.73 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHH-HcCcceEEEeEEeeec----------ccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 96 RKAMAQSFKALA-AAGVEGVVVEVWWGVV----------ERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 96 ~~~~~~~L~~LK-~~GVdGV~vdVWWGiV----------E~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
...++.+|+.++ ++|+.-|.+ ||+. +..+-..|||+..|++++.+.+.|||..+-|+|=
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~------- 107 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFM------- 107 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB-------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEec-------
Confidence 357889999986 699999864 4444 2122223999999999999999999999999964
Q ss_pred CCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 009162 165 DPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLG 234 (541)
Q Consensus 165 D~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g 234 (541)
|.++... +.-.|.. .|+ ++ | -.-.+.+.|++++|..++.+.+|
T Consensus 108 -------p~~~~~~----~~~~~~~-~~~-----~~------p----p~~~~~W~~lv~~~~~h~~~RYG 150 (486)
T PF01229_consen 108 -------PMALASG----YQTVFWY-KGN-----IS------P----PKDYEKWRDLVRAFARHYIDRYG 150 (486)
T ss_dssp --------GGGBSS------EETTT-TEE------S-----------BS-HHHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhcCC----CCccccc-cCC-----cC------C----cccHHHHHHHHHHHHHHHHhhcC
Confidence 6666431 1111111 111 11 1 12468899999999999999988
No 32
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=91.50 E-value=1.2 Score=45.16 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhH
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVL 176 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~ 176 (541)
...++++.++|+++|.++.-|+.-.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++-.++.
T Consensus 171 ~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l~ 240 (330)
T cd03465 171 IRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELMA 240 (330)
T ss_pred HHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHHH
Confidence 445566777899999999988743322466555 999999999999998765 569995 432 4445665
Q ss_pred hhhhcCCCceeeCCC
Q 009162 177 EEIDKDPDLAYSDRF 191 (541)
Q Consensus 177 ~~g~~~pdi~ytD~~ 191 (541)
+. ..|++-.|..
T Consensus 241 ~~---~~d~~~~d~~ 252 (330)
T cd03465 241 DL---GADVFSIDVT 252 (330)
T ss_pred Hh---CCCeEeeccc
Confidence 53 3567666644
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=90.86 E-value=0.44 Score=50.53 Aligned_cols=53 Identities=36% Similarity=0.538 Sum_probs=40.6
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
.-|+.||+.||+-|++-|| |.|...|..|...=.++++-++++|||| .|-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 4578899999999999997 6766458889988889999999999999 899994
No 34
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=90.53 E-value=1.4 Score=49.40 Aligned_cols=111 Identities=19% Similarity=0.249 Sum_probs=85.5
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCC--cccccc---hHHHHHHHHHhCCCcEEEEEeeecCCCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRP--GVYDWR---GYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p--~~YdWs---~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~ 166 (541)
.+...-..+.|++.||++||++-...+-|..+=|.|. +..|.. .|..|++-..+.|++-.|-| ||
T Consensus 86 a~D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fH--------- 155 (524)
T KOG0626|consen 86 AVDFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FH--------- 155 (524)
T ss_pred echhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ec---------
Confidence 3456668999999999999999999999999999887 557775 59999999999999998777 46
Q ss_pred CcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcC--ceeEEE
Q 009162 167 KWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGA--IITGVQ 241 (541)
Q Consensus 167 ~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~--~I~eI~ 241 (541)
--||+|+.++ .|- ++. +.-++-++||.+===++|.+..+. ||.|..
T Consensus 156 --wDlPq~LeDe------------YgG--------------wLn-~~ivedF~~yA~~CF~~fGDrVK~WiT~NEP~ 203 (524)
T KOG0626|consen 156 --WDLPQALEDE------------YGG--------------WLN-PEIVEDFRDYADLCFQEFGDRVKHWITFNEPN 203 (524)
T ss_pred --CCCCHHHHHH------------hcc--------------ccC-HHHHHHHHHHHHHHHHHhcccceeeEEecccc
Confidence 5599999663 222 222 334677777777777788887764 666654
No 35
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=90.32 E-value=0.99 Score=43.20 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=44.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC--Cccc-cc-------chHHHHHHHHHhCCCcEEEEEe
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR--PGVY-DW-------RGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~--p~~Y-dW-------s~Y~~l~~mv~~~GLKv~~vms 155 (541)
-++++|++.|+.||++|++.|.+- |.-.+... |-++ ++ +....+++.|.+.|+|| +++
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv--~~G 84 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKV--FVG 84 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEE--EEe
Confidence 367899999999999999999876 55554432 3222 11 36889999999999999 555
No 36
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=89.00 E-value=4 Score=41.29 Aligned_cols=135 Identities=24% Similarity=0.356 Sum_probs=78.0
Q ss_pred CcceEEeeecceeccCCeec-CHHHHHHHHHHHHHcC-cceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 75 GSPVFVKLPEDSTMIGGKVK-RRKAMAQSFKALAAAG-VEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~-~~~~~~~~L~~LK~~G-VdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
..|+-++.= +...+|... +.+...+-|+.+-.+| +|.|.|+..++ =...+++.+.+++.|.|+
T Consensus 74 ~~PiI~T~R--~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kv-- 138 (253)
T PRK02412 74 GKPLLFTFR--TAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKV-- 138 (253)
T ss_pred CCcEEEEEC--ChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEE--
Confidence 355554432 344555543 3333444467777778 99999987553 124678889999999998
Q ss_pred EEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccc-cCCCCchHHHHHHHHHHHHHHhh
Q 009162 153 LLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPV-LRGRSPIQAYTDFMRNFRDTFRP 231 (541)
Q Consensus 153 vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv-~~GRTpiq~Y~dfm~sF~~~f~~ 231 (541)
|+|+|. ..-+++.|-+.. .-.++.++|+|-+-+ ..-+++.++.+ .+ .|..++..
T Consensus 139 I~S~H~--------f~~tP~~~~l~~---------------~~~~~~~~gaDivKia~~a~~~~D~~~-ll-~~~~~~~~ 193 (253)
T PRK02412 139 VLSYHD--------FEKTPPKEEIVE---------------RLRKMESLGADIVKIAVMPQSEQDVLT-LL-NATREMKE 193 (253)
T ss_pred EEeeCC--------CCCCcCHHHHHH---------------HHHHHHHhCCCEEEEEecCCCHHHHHH-HH-HHHHHHHh
Confidence 999993 223345553321 123556778887665 23444444433 22 34444433
Q ss_pred hhcCceeEEEecccCCCcC
Q 009162 232 LLGAIITGVQVGMGPAGEL 250 (541)
Q Consensus 232 ~~g~~I~eI~VGlGP~GEL 250 (541)
. ...+-=|.++||+-|-+
T Consensus 194 ~-~~~~P~i~~~MG~~G~~ 211 (253)
T PRK02412 194 L-YADQPLITMSMGKLGRI 211 (253)
T ss_pred c-CCCCCEEEEeCCCCchH
Confidence 2 12244578999998854
No 37
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=88.21 E-value=3.3 Score=40.93 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=71.8
Q ss_pred eccCCeec-CHHHHHHHHHHH-HHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 87 TMIGGKVK-RRKAMAQSFKAL-AAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 87 V~~~~~~~-~~~~~~~~L~~L-K~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
...+|... +.+...+-|+.+ ...|+|.|.|+.++.. ...+++++.+++.|-|| |+|+|.=.+
T Consensus 67 ~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~--- 130 (228)
T TIGR01093 67 ISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQK--- 130 (228)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCC---
Confidence 33455443 333333335555 7789999999987741 23678888889999888 999994321
Q ss_pred CCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCccccc-CCCCchHHHHHHHHHHHHHHhhhhcCceeEEEec
Q 009162 165 DPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVL-RGRSPIQAYTDFMRNFRDTFRPLLGAIITGVQVG 243 (541)
Q Consensus 165 D~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~-~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~eI~VG 243 (541)
+-+.+.|+ +. -.+..++|+|-+-+- --+++.+.. ..+ +|..++... ..+-=|.++
T Consensus 131 ---tp~~~~l~-~~----------------~~~~~~~gaDivKia~~a~~~~D~~-~ll-~~~~~~~~~--~~~p~i~~~ 186 (228)
T TIGR01093 131 ---TPSWEEIV-ER----------------LEKALSYGADIVKIAVMANSKEDVL-TLL-EITNKVDEH--ADVPLITMS 186 (228)
T ss_pred ---CCCHHHHH-HH----------------HHHHHHhCCCEEEEEeccCCHHHHH-HHH-HHHHHHHhc--CCCCEEEEe
Confidence 11122332 21 224456778877653 334433322 222 455555443 234457899
Q ss_pred ccCCCcC
Q 009162 244 MGPAGEL 250 (541)
Q Consensus 244 lGP~GEL 250 (541)
||+.|-+
T Consensus 187 MG~~G~~ 193 (228)
T TIGR01093 187 MGDRGKI 193 (228)
T ss_pred CCCCChh
Confidence 9999865
No 38
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=87.41 E-value=0.97 Score=45.48 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeeccc--CCCc---ccccchHHHHHHHHHhCCCcEEEEEeeecCCCC
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVER--DRPG---VYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~--~~p~---~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGN 162 (541)
.+.+.++++.++|+++|.++.=|+.... -+|. +|-|.+++++++.+++.|.++ + .|-||+.
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~ 210 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH
Confidence 3556667888999999999987765432 1344 445899999999888888765 3 4999963
No 39
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=87.19 E-value=27 Score=35.90 Aligned_cols=87 Identities=9% Similarity=0.156 Sum_probs=57.1
Q ss_pred ecCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCCC
Q 009162 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD 165 (541)
..+.+.+.+-++.+|++| +|.|.+|.=|- ...+-+.|+|. --+++++-+++.|+|+ ++..|-. |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 468889999999999999 88999997443 21111245554 6889999999999998 6665532 211
Q ss_pred CCcCCCChhhHhhhhcCCCceeeCCCCC
Q 009162 166 PKWVPLPQWVLEEIDKDPDLAYSDRFGR 193 (541)
Q Consensus 166 ~~~IpLP~WV~~~g~~~pdi~ytD~~G~ 193 (541)
+ - | +-+++. .++.+.++.+|.
T Consensus 93 ~--~--~--~~~e~~-~~g~~v~~~~g~ 113 (308)
T cd06593 93 K--S--P--LFKEAA-EKGYLVKKPDGS 113 (308)
T ss_pred C--c--h--hHHHHH-HCCeEEECCCCC
Confidence 1 1 2 233333 357777776654
No 40
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=86.93 E-value=1.1 Score=46.36 Aligned_cols=110 Identities=25% Similarity=0.337 Sum_probs=69.2
Q ss_pred CCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 72 ~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..++|.|.+-.--.+- .|..+-.+++++-|+.+++.||.||.||-+ .+++|+-=..|+++++.|.+++|-|
T Consensus 83 ~~KgVgi~lw~~~~~~--~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lmv- 153 (273)
T PF10566_consen 83 KEKGVGIWLWYHSETG--GNVANLEKQLDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLMV- 153 (273)
T ss_dssp HHTT-EEEEEEECCHT--TBHHHHHCCHHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-EE-
T ss_pred HHcCCCEEEEEeCCcc--hhhHhHHHHHHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcEE-
Confidence 3457777766655431 122222233699999999999999999986 4588999999999999999998854
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecc--cCcccc
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLG--CDILPV 208 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg--~D~~pv 208 (541)
-||.|= .|.=+. +.+|.++ .++|.|-.|+-.+. .+.-|.
T Consensus 154 ---nfHg~~----------kPtG~~---RTyPN~m--T~EgVrG~E~~~~~~~~~~~p~ 194 (273)
T PF10566_consen 154 ---NFHGAT----------KPTGLR---RTYPNLM--TREGVRGQEYNKWSGDGGNPPE 194 (273)
T ss_dssp ---EETTS-------------TTHH---HCSTTEE--EE--S--GGGGGTT-TTS-HCC
T ss_pred ---EecCCc----------CCCccc---ccCccHH--HHHHhhhhhhcccccCCCCCCc
Confidence 899654 454222 3688874 67899999995544 344443
No 41
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=85.56 E-value=2.9 Score=42.97 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=55.1
Q ss_pred CCcceEEeeecceeccCCee----cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCc
Q 009162 74 NGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLK 149 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~----~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLK 149 (541)
..+||+||+=-- .+.+ ..-+.+..+++.+|++|+|||.+.+- ..+++.|...-++|++.++ |++
T Consensus 50 ~~ipv~vMIRPR----~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~ 117 (248)
T PRK11572 50 VTIPVHPIIRPR----GGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLA 117 (248)
T ss_pred cCCCeEEEEecC----CCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCc
Confidence 369999998542 2222 35578999999999999999998764 3488999999999999994 777
Q ss_pred EEEEEeeec
Q 009162 150 VRALLAFHQ 158 (541)
Q Consensus 150 v~~vmsFHq 158 (541)
+--=++|-+
T Consensus 118 vTFHRAfD~ 126 (248)
T PRK11572 118 VTFHRAFDM 126 (248)
T ss_pred eEEechhhc
Confidence 733344443
No 42
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=85.18 E-value=9 Score=43.42 Aligned_cols=64 Identities=23% Similarity=0.363 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCcceEEE-eEE--eeecccCCCcccc-------------------------cchHHHHHHHHHhCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVV-EVW--WGVVERDRPGVYD-------------------------WRGYFDLIVLASNCGL 148 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~v-dVW--WGiVE~~~p~~Yd-------------------------Ws~Y~~l~~mv~~~GL 148 (541)
..+...|..||++||+.|.+ +|. -+.-|..+...|+ ...++++++.+++.||
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi 243 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGI 243 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCC
Confidence 45667899999999999976 232 1111111111122 2458999999999999
Q ss_pred cEEEEEee-ecCC
Q 009162 149 KVRALLAF-HQCG 160 (541)
Q Consensus 149 Kv~~vmsF-HqCG 160 (541)
+|..=+-| |-|+
T Consensus 244 ~VilDvV~NH~~~ 256 (605)
T TIGR02104 244 RVIMDVVYNHTYS 256 (605)
T ss_pred EEEEEEEcCCccC
Confidence 99777777 5443
No 43
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=84.76 E-value=2.2 Score=46.10 Aligned_cols=57 Identities=16% Similarity=0.295 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
..+.|+++++..|++|+||..+++. .+..+.+.-...+++.|++.|+|| .+||---+
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD~~~ 71 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFDMNS 71 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEecccC
Confidence 7789999999999999999999996 244567899999999999999999 77776543
No 44
>PRK10658 putative alpha-glucosidase; Provisional
Probab=84.54 E-value=35 Score=39.59 Aligned_cols=183 Identities=14% Similarity=0.211 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC
Q 009162 95 RRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK 167 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~ 167 (541)
+.+.+..-++.+++.| +|.|.+|+.|.. ...-+.|.|. .-+++++-+++.|+|+.+++ + +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i--~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWI--N---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEec--c---------C
Confidence 4566777778888755 589999998842 1111244443 45788899999999994443 3 2
Q ss_pred cCCCChhhHhhhhcCCCceeeCCCCCcc---------------------------ccceecccC------------cccc
Q 009162 168 WVPLPQWVLEEIDKDPDLAYSDRFGRRN---------------------------MEYISLGCD------------ILPV 208 (541)
Q Consensus 168 ~IpLP~WV~~~g~~~pdi~ytD~~G~rn---------------------------~E~LSlg~D------------~~pv 208 (541)
.|..-.-+-+++.+ -+.|.++.+|..- ++.+..|+| ++..
T Consensus 348 ~i~~~s~~f~e~~~-~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~ 426 (665)
T PRK10658 348 YIAQKSPLFKEGKE-KGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVW 426 (665)
T ss_pred CcCCCchHHHHHHH-CCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeecccee
Confidence 23222234455544 3778888777532 244555655 2223
Q ss_pred cCCCCchH---HHHHHH-HHHHHHHhhhhcC-ceeEEEecccCCCcCCCCCCCCCCCCCcccCCCCcccccccHHHHHHH
Q 009162 209 LRGRSPIQ---AYTDFM-RNFRDTFRPLLGA-IITGVQVGMGPAGELRYPSLPSQKLMWSWRSRELGEFQCYDKYMLASL 283 (541)
Q Consensus 209 ~~GRTpiq---~Y~dfm-~sF~~~f~~~~g~-~I~eI~VGlGP~GELRYPSyp~~~g~W~~~~pgiGeFQCYDky~~~~l 283 (541)
..|.++.+ .|.-.| ++..+.+.+..+. ...-+ .=-|-+|-=|||.. |.=| +.- .+ +.|+.++
T Consensus 427 ~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~-tRs~~aGsQry~~~------WsGD-~~s----tw-~~l~~si 493 (665)
T PRK10658 427 FDGSDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLF-ARSATVGGQQFPVH------WGGD-CYS----NY-ESMAESL 493 (665)
T ss_pred cCCCcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEE-EecccCCCCCCCCE------ECCC-CCC----CH-HHHHHHH
Confidence 45555433 233332 3344444444332 11111 11355677788742 4433 111 12 3467777
Q ss_pred HHHHHH--hcccccCCCCCCCCCCCCC
Q 009162 284 NACARE--IGMREWGDGGPIGASNLMQ 308 (541)
Q Consensus 284 ~~~a~~--~gn~~WG~~gP~~ag~Yn~ 308 (541)
+..+.. .|-+-||. |-|.+..
T Consensus 494 ~~~Ls~glsG~~~~g~----DIGGF~g 516 (665)
T PRK10658 494 RGGLSLGLSGFGFWSH----DIGGFEN 516 (665)
T ss_pred HHHHHHHhcCCccccC----ccCCCCC
Confidence 776653 67889984 5665544
No 45
>PRK01060 endonuclease IV; Provisional
Probab=83.36 E-value=2 Score=42.66 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=41.4
Q ss_pred eeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc-----chHHHHHHHHHhCCCcE
Q 009162 81 KLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-----RGYFDLIVLASNCGLKV 150 (541)
Q Consensus 81 MlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----s~Y~~l~~mv~~~GLKv 150 (541)
|+++++.++ -.+.++..|+.++++|+++|++.+. +|..+.. ...+++-+++++.||++
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~-------~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTG-------NPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECC-------CCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 567766543 2233999999999999999999653 2333322 24667888999999997
No 46
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.21 E-value=2.2 Score=41.40 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccC-CCccc-------------ccchHHHHHHHHHhCCCcEEEEEee-ecC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERD-RPGVY-------------DWRGYFDLIVLASNCGLKVRALLAF-HQC 159 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsF-HqC 159 (541)
|.+.+.+.|..||++||++|.+. .+.|.. +..-| .++.+++|++.|++.|+||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~---Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLS---PIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEES---S-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecc---cccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 46788999999999999999886 233321 12222 2456789999999999999655554 655
Q ss_pred CC
Q 009162 160 GS 161 (541)
Q Consensus 160 GG 161 (541)
..
T Consensus 79 ~~ 80 (316)
T PF00128_consen 79 DD 80 (316)
T ss_dssp TT
T ss_pred cc
Confidence 53
No 47
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=83.19 E-value=2.3 Score=42.34 Aligned_cols=70 Identities=27% Similarity=0.447 Sum_probs=48.6
Q ss_pred CCCcceEEeeecceeccCCee----cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCC
Q 009162 73 RNGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (541)
Q Consensus 73 ~~~vpv~VMlPLd~V~~~~~~----~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 148 (541)
...+||+||+=-- .+.+ ..-+.+..+++.+|++|++||.+.+ +- .+++.|-..-++|.+.++ |+
T Consensus 48 ~~~ipv~vMIRpr----~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~ 115 (201)
T PF03932_consen 48 AVDIPVHVMIRPR----GGDFVYSDEEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GM 115 (201)
T ss_dssp HTTSEEEEE--SS----SS-S---HHHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TS
T ss_pred hcCCceEEEECCC----CCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CC
Confidence 4589999998541 1211 3557899999999999999999865 33 378899999999999987 77
Q ss_pred cEEEEEeeec
Q 009162 149 KVRALLAFHQ 158 (541)
Q Consensus 149 Kv~~vmsFHq 158 (541)
.+ .||-
T Consensus 116 ~~----tFHR 121 (201)
T PF03932_consen 116 PV----TFHR 121 (201)
T ss_dssp EE----EE-G
T ss_pred eE----EEeC
Confidence 77 4564
No 48
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=82.22 E-value=2.1 Score=44.19 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCccc---ccchHHHHHHHHHhCCCcEEEEEeeecCCC
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---DWRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsFHqCGG 161 (541)
...++++.++|+++|.+..-|+.-.--+|.+| -+.+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 44556678999999988877864223345544 4999999999999987432 3 599973
No 49
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=81.82 E-value=21 Score=35.06 Aligned_cols=124 Identities=18% Similarity=0.225 Sum_probs=69.8
Q ss_pred ceeccCCeec-CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCC
Q 009162 85 DSTMIGGKVK-RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGP 163 (541)
Q Consensus 85 d~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNV 163 (541)
-+...+|... +.+...+-|+.+-.+|++.|.|+..+ +-..++++.+++.|-|| |+|+|.-.+
T Consensus 63 R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~-- 125 (225)
T cd00502 63 RTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSG-- 125 (225)
T ss_pred cccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCC--
Confidence 3344455443 33334444676777889999988754 24677888888889998 999995432
Q ss_pred CCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCccccc-CCCCchHHHHHHHHHHHHHHhhhhcCceeEEEe
Q 009162 164 GDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVL-RGRSPIQAYTDFMRNFRDTFRPLLGAIITGVQV 242 (541)
Q Consensus 164 GD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~-~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~eI~V 242 (541)
++ +.+.|.... .++-++|+|-+-+- ..+++.+.. +.+ .|..++.... .+.=|.+
T Consensus 126 --tp--~~~~l~~~~-----------------~~~~~~gadivKla~~~~~~~D~~-~ll-~~~~~~~~~~--~~p~i~~ 180 (225)
T cd00502 126 --TP--SDEELVSRL-----------------EKMAALGADIVKIAVMANSIEDNL-RLL-KFTRQVKNLY--DIPLIAI 180 (225)
T ss_pred --Cc--CHHHHHHHH-----------------HHHHHhCCCEEEEEecCCCHHHHH-HHH-HHHHHHHhcC--CCCEEEE
Confidence 22 333443221 12334566666542 223332222 222 3444444322 3455789
Q ss_pred cccCCCcC
Q 009162 243 GMGPAGEL 250 (541)
Q Consensus 243 GlGP~GEL 250 (541)
+||+.|.+
T Consensus 181 ~MG~~G~~ 188 (225)
T cd00502 181 NMGELGKL 188 (225)
T ss_pred EcCCCCch
Confidence 99999864
No 50
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=80.71 E-value=19 Score=35.20 Aligned_cols=129 Identities=20% Similarity=0.357 Sum_probs=76.3
Q ss_pred EEeeecceeccCCeec-CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 79 FVKLPEDSTMIGGKVK-RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 79 ~VMlPLd~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
-|.+-+-+...+|... +.+.-.+-|+.+-.+|++.|.|+.+ .+.-.......+++.+-|| |+|+|
T Consensus 56 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H 121 (224)
T PF01487_consen 56 PIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYH 121 (224)
T ss_dssp EEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEE
T ss_pred CEEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEec
Confidence 3444445556667664 4455556667777788998888544 1333444477888999999 99999
Q ss_pred cCCCCCCCCCcCCCChh--hHhhhhcCCCceeeCCCCCccccceecccCcccc-cCCCCchHHHHHHHHHHHHHHhhhhc
Q 009162 158 QCGSGPGDPKWVPLPQW--VLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPV-LRGRSPIQAYTDFMRNFRDTFRPLLG 234 (541)
Q Consensus 158 qCGGNVGD~~~IpLP~W--V~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv-~~GRTpiq~Y~dfm~sF~~~f~~~~g 234 (541)
-..+. |.| +.+. -.+...+|+|-+-+ ...+++.+..+ +..|..++...
T Consensus 122 ~f~~t---------p~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~-- 172 (224)
T PF01487_consen 122 DFEKT---------PSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREE-- 172 (224)
T ss_dssp ESS------------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHH--
T ss_pred cCCCC---------CCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhc--
Confidence 43322 444 2221 23344567776554 34555555555 55566666655
Q ss_pred CceeEEEecccCCCcC
Q 009162 235 AIITGVQVGMGPAGEL 250 (541)
Q Consensus 235 ~~I~eI~VGlGP~GEL 250 (541)
..+.=|.++||+.|.+
T Consensus 173 ~~~p~i~~~MG~~G~~ 188 (224)
T PF01487_consen 173 PDIPVIAISMGELGRI 188 (224)
T ss_dssp TSSEEEEEEETGGGHH
T ss_pred cCCcEEEEEcCCCchh
Confidence 5677789999999964
No 51
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=79.80 E-value=3 Score=44.36 Aligned_cols=82 Identities=20% Similarity=0.217 Sum_probs=54.1
Q ss_pred CcceEEeeecceecc-----CCe----ecCHHHHHHH-----------HHHHHHcCcce-EEEeEEeeecccCCCcccc-
Q 009162 75 GSPVFVKLPEDSTMI-----GGK----VKRRKAMAQS-----------FKALAAAGVEG-VVVEVWWGVVERDRPGVYD- 132 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~-----~~~----~~~~~~~~~~-----------L~~LK~~GVdG-V~vdVWWGiVE~~~p~~Yd- 132 (541)
.+-..+..|++++.+ .+. +.+++.+.+- +++..++|+++ |.+..+-+..+-=+|.+|+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~lsp~~f~e 251 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLRPKQFEK 251 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccCHHHHHH
Confidence 455678889996652 111 2456554443 44556789998 7777762222222466666
Q ss_pred --cchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 133 --WRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 133 --Ws~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
|-+++++++-+++.|.++ |+ |-||
T Consensus 252 f~~P~~k~i~~~i~~~g~~~--il--h~cG 277 (378)
T cd03308 252 FYWPSFKKVVEGLAARGQRI--FL--FFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHhcCCCE--EE--EcCC
Confidence 999999999999988665 54 9998
No 52
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.94 E-value=10 Score=38.79 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 72 ~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
....+|+.+|.=...|- .-.+++=++.+|++||+||-++ . - -+...+++++.++++||++.
T Consensus 86 ~~~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip--------D--L--p~ee~~~~~~~~~~~gl~~I 146 (258)
T PRK13111 86 KDPTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP--------D--L--PPEEAEELRAAAKKHGLDLI 146 (258)
T ss_pred cCCCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC--------C--C--CHHHHHHHHHHHHHcCCcEE
Confidence 34568988888775432 2367778999999999999996 1 1 23577899999999999997
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCce-eeCCCCC
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLA-YSDRFGR 193 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~-ytD~~G~ 193 (541)
+.++ ++.| +..+..+.+..++.. +....|.
T Consensus 147 ~lva-----------p~t~-~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 147 FLVA-----------PTTT-DERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred EEeC-----------CCCC-HHHHHHHHHhCCCcEEEEeCCCC
Confidence 5554 4444 678888777777744 4466654
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=77.78 E-value=9.8 Score=36.22 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=49.5
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeeccc-CCCccc-------------ccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVER-DRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .+...| ..+.++++++.++++|++|..=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 467899999999999999999977654332221 001112 346689999999999999977677666
Q ss_pred CCC
Q 009162 159 CGS 161 (541)
Q Consensus 159 CGG 161 (541)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 664
No 54
>PLN02361 alpha-amylase
Probab=77.71 E-value=6.5 Score=42.80 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc-------------chHHHHHHHHHhCCCcEEEEEee-ecC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-------------RGYFDLIVLASNCGLKVRALLAF-HQC 159 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~vmsF-HqC 159 (541)
+-++.+.+.|..||++||++|-+.-=. |..++..|+- +.+++|++.+++.|+||.+=+-+ |-|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~ 102 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRV 102 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccccc
Confidence 467899999999999999999876532 3333333433 45899999999999999665555 777
Q ss_pred CCCCC
Q 009162 160 GSGPG 164 (541)
Q Consensus 160 GGNVG 164 (541)
|..-|
T Consensus 103 g~~~~ 107 (401)
T PLN02361 103 GTTQG 107 (401)
T ss_pred CCCCC
Confidence 75443
No 55
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=77.38 E-value=11 Score=38.80 Aligned_cols=95 Identities=11% Similarity=-0.082 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChh-
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW- 174 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~W- 174 (541)
+++.+.+++|.++|++.|.+|.= |+.+=...+....-.+.+++.+.+++.+...++ ..|-|.||...+-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 46677888999999999999985 665432213345566777788877775655543 56999999743322222334
Q ss_pred hHhh-hhcCCCceeeCCCCC
Q 009162 175 VLEE-IDKDPDLAYSDRFGR 193 (541)
Q Consensus 175 V~~~-g~~~pdi~ytD~~G~ 193 (541)
+.+. .+...|.+.-|-...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 2232 234577777776543
No 56
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.91 E-value=28 Score=36.03 Aligned_cols=83 Identities=12% Similarity=0.183 Sum_probs=55.8
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccc-----cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCC
Q 009162 94 KRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYD-----WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDP 166 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~Yd-----Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~ 166 (541)
.+.+.+.+-++.+++.| ++.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+.+++. -
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~--P-------- 92 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVH--P-------- 92 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeEEEEEC--C--------
Confidence 56788999999999988 689999985532 122333 44578888999999999954444 2
Q ss_pred CcCCCChhhHhhhhcCCCceeeCCCC
Q 009162 167 KWVPLPQWVLEEIDKDPDLAYSDRFG 192 (541)
Q Consensus 167 ~~IpLP~WV~~~g~~~pdi~ytD~~G 192 (541)
.|..-.=+-+++. ..+.+.++.+|
T Consensus 93 -~i~~~s~~~~e~~-~~g~~vk~~~g 116 (303)
T cd06592 93 -FINTDSENFREAV-EKGYLVSEPSG 116 (303)
T ss_pred -eeCCCCHHHHhhh-hCCeEEECCCC
Confidence 1222122334433 45789999888
No 57
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=75.95 E-value=4.1 Score=40.68 Aligned_cols=56 Identities=16% Similarity=0.295 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccc--hHHHHHHHHHhCCCcEEEE
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWR--GYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs--~Y~~l~~mv~~~GLKv~~v 153 (541)
..-.|+..|+.++++|.++|++.++-. + ..+..++|+ .-.++.++++++||+|..+
T Consensus 14 ~~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 14 KGECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 346789999999999999999964421 1 113344443 4667888999999999544
No 58
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.19 E-value=5.6 Score=39.57 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=45.4
Q ss_pred eecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccch--HHHHHHHHHhCCCcEEEE
Q 009162 82 LPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG--YFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 82 lPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~--Y~~l~~mv~~~GLKv~~v 153 (541)
+||.+..- .++....++..++.+|++|.++|++.+. . .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~~-~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E-SD-ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c-cc-cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 45554431 3444557999999999999999999642 0 00 0123345654 668899999999999654
No 59
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.69 E-value=6.9 Score=39.37 Aligned_cols=54 Identities=19% Similarity=0.068 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCcceEEEeEEeee---cccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGV---VERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGi---VE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
+..|+.||++|++.|.++.= +. .+.-. +..+|..+.+.++.++++|+++.+-+-
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEE
Confidence 56788999999999988733 21 11111 246889999999999999998755443
No 60
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=73.20 E-value=26 Score=35.83 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhh
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g 179 (541)
..+|+.....||+.|.+-+ ...+++...+.++.+++.|+++.+-+.. .... -|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~---------a~~~-~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA---------ISGY-SDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe---------ecCC-CHHHHHHHH
Confidence 3467888899999999865 1127888999999999999999776661 1223 377777643
Q ss_pred h----cCCC-ceeeCCCCCcc
Q 009162 180 D----KDPD-LAYSDRFGRRN 195 (541)
Q Consensus 180 ~----~~pd-i~ytD~~G~rn 195 (541)
+ .-+| |.+.|-.|.-+
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~ 165 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMY 165 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCC
Confidence 2 2233 66677666544
No 61
>PHA00442 host recBCD nuclease inhibitor
Probab=73.12 E-value=3.4 Score=33.79 Aligned_cols=27 Identities=37% Similarity=0.792 Sum_probs=22.5
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhC
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC 146 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 146 (541)
.-|.+|++.||| ||+||.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457888888886 899999999998653
No 62
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=72.81 E-value=33 Score=35.44 Aligned_cols=112 Identities=17% Similarity=0.299 Sum_probs=74.5
Q ss_pred CCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 72 ~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
....+|+.+|.=.+.|- ...+++=++.++++||+||.++= =| +....++.+.++++||+++
T Consensus 84 ~~~~~pivlm~Y~N~i~-------~~G~e~F~~~~~~aGvdGlIipD--------LP----~ee~~~~~~~~~~~gl~~I 144 (259)
T PF00290_consen 84 KEPDIPIVLMTYYNPIF-------QYGIERFFKEAKEAGVDGLIIPD--------LP----PEESEELREAAKKHGLDLI 144 (259)
T ss_dssp HCTSSEEEEEE-HHHHH-------HH-HHHHHHHHHHHTEEEEEETT--------SB----GGGHHHHHHHHHHTT-EEE
T ss_pred cCCCCCEEEEeeccHHh-------ccchHHHHHHHHHcCCCEEEEcC--------CC----hHHHHHHHHHHHHcCCeEE
Confidence 45789999998875442 24577779999999999999852 12 3567899999999999998
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCcee-eCCCCCccccceecccCcccccCCCCch-HHHHHHHHHHHHHH
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY-SDRFGRRNMEYISLGCDILPVLRGRSPI-QAYTDFMRNFRDTF 229 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~y-tD~~G~rn~E~LSlg~D~~pv~~GRTpi-q~Y~dfm~sF~~~f 229 (541)
...+ ++ ..+..+.++.+.-+...| ....|.. +.|+.+ ..+.++.+..|+..
T Consensus 145 ~lv~-----------p~-t~~~Ri~~i~~~a~gFiY~vs~~GvT---------------G~~~~~~~~l~~~i~~ik~~~ 197 (259)
T PF00290_consen 145 PLVA-----------PT-TPEERIKKIAKQASGFIYLVSRMGVT---------------GSRTELPDELKEFIKRIKKHT 197 (259)
T ss_dssp EEEE-----------TT-S-HHHHHHHHHH-SSEEEEESSSSSS---------------STTSSCHHHHHHHHHHHHHTT
T ss_pred EEEC-----------CC-CCHHHHHHHHHhCCcEEEeeccCCCC---------------CCcccchHHHHHHHHHHHhhc
Confidence 8887 11 236788887766666555 4666642 344433 34666666666554
No 63
>PLN02591 tryptophan synthase
Probab=72.07 E-value=24 Score=36.21 Aligned_cols=89 Identities=16% Similarity=0.222 Sum_probs=63.3
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
..+|+.+|.=.+.|- .-.+++=++.+|++||+||-++= .-++.-.++.+.++++||...+.
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 467888887775431 24788889999999999999971 12466778999999999999665
Q ss_pred EeeecCCCCCCCCCcCCCChhhHhhhhcCCCceee-CCCCC
Q 009162 154 LAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYS-DRFGR 193 (541)
Q Consensus 154 msFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~yt-D~~G~ 193 (541)
.+ ++.+ +..+..+.+.-++..|. .+.|.
T Consensus 138 v~-----------Ptt~-~~ri~~ia~~~~gFIY~Vs~~Gv 166 (250)
T PLN02591 138 TT-----------PTTP-TERMKAIAEASEGFVYLVSSTGV 166 (250)
T ss_pred eC-----------CCCC-HHHHHHHHHhCCCcEEEeeCCCC
Confidence 54 3333 57888877766665543 44443
No 64
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=71.82 E-value=8.1 Score=43.96 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=41.0
Q ss_pred CHHHHHHHH-HHHHHcCcceEEE-eEEeeecccCCCcccccc-----------------hHHHHHHHHHhCCCcEEEEEe
Q 009162 95 RRKAMAQSF-KALAAAGVEGVVV-EVWWGVVERDRPGVYDWR-----------------GYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 95 ~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~vms 155 (541)
+.+++...| ..||++||+.|.+ +|... |...+|- .+++|++.+++.||+|..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 467777886 9999999999999 66431 2222232 489999999999999955444
Q ss_pred e
Q 009162 156 F 156 (541)
Q Consensus 156 F 156 (541)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 4
No 65
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.94 E-value=39 Score=37.39 Aligned_cols=127 Identities=18% Similarity=0.177 Sum_probs=80.7
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEE-eeec------ccCCCc-------ccccchHHHHHHHHHhCCCcEEEEEee
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVV------ERDRPG-------VYDWRGYFDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiV------E~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~~vmsF 156 (541)
..+..+..+...|..|..+|++.|-+-|| +|.. .+...+ .=.|+-...+++.+++.||++++=+.|
T Consensus 58 ~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 58 RVLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred cccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhh
Confidence 35679999999999999999999999999 8842 332222 113455566777888999999887765
Q ss_pred ecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhh
Q 009162 157 HQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLL 233 (541)
Q Consensus 157 HqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~ 233 (541)
---+=+-. .-..-=|.|... +.|+-.|....|.. +..++++=- +.=++|+.+...+.-..|
T Consensus 138 ~~~a~~~s-~~~~~~p~~~~~---~~~~~~~~~~~~~~----------~~~~ldPg~--Pevq~~i~~lv~evV~~Y 198 (418)
T COG1649 138 YRMAPPTS-PLTKRHPHWLTT---KRPGWVYVRHQGWG----------KRVWLDPGI--PEVQDFITSLVVEVVRNY 198 (418)
T ss_pred cccCCCCC-hhHhhCCCCccc---CCCCeEEEecCCce----------eeeEeCCCC--hHHHHHHHHHHHHHHhCC
Confidence 43331100 111112566666 44666666655542 223555433 556778887777776654
No 66
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.39 E-value=3.5 Score=37.89 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=35.3
Q ss_pred HHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 103 FKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 103 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
|+.++++|+++|++..++..-... + =...+++.++++++||++..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEE
Confidence 688999999999999886544322 1 34678999999999999743
No 67
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=70.29 E-value=19 Score=38.94 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=72.2
Q ss_pred cCHHHH-----HHHHHHHHHcCcceEEEeEEeeecccCC---Cccc----ccchHHHHHHHHHhCCCcEEEEEeeecCCC
Q 009162 94 KRRKAM-----AQSFKALAAAGVEGVVVEVWWGVVERDR---PGVY----DWRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (541)
Q Consensus 94 ~~~~~~-----~~~L~~LK~~GVdGV~vdVWWGiVE~~~---p~~Y----dWs~Y~~l~~mv~~~GLKv~~vmsFHqCGG 161 (541)
...+.| +..+..+|++|++.|++++=|-.++.-. |.-. .+ ..+++++-+++.||+| ++..|.-.|
T Consensus 65 ~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~~ 141 (407)
T COG2730 65 LLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYPG 141 (407)
T ss_pred cchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccCC
Confidence 445555 8999999999999999999833335432 2222 34 8889999999999999 999995432
Q ss_pred -CCCCCCcCCCChhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceeEE
Q 009162 162 -GPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITGV 240 (541)
Q Consensus 162 -NVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~eI 240 (541)
+.++. ..|. ++..+. .-+.++.|.+.-+....+|.+ .++|..|
T Consensus 142 ~~~~~~-----~s~~------------~~~~~~-----------------~~~~~~~~~~~w~~ia~~f~~--~~~VIg~ 185 (407)
T COG2730 142 GNNGHE-----HSGY------------TSDYKE-----------------ENENVEATIDIWKFIANRFKN--YDTVIGF 185 (407)
T ss_pred CCCCcC-----cccc------------cccccc-----------------cchhHHHHHHHHHHHHHhccC--CCceeee
Confidence 22221 1121 221111 123568899999999999999 3555544
Q ss_pred Ee
Q 009162 241 QV 242 (541)
Q Consensus 241 ~V 242 (541)
++
T Consensus 186 ~~ 187 (407)
T COG2730 186 EL 187 (407)
T ss_pred ee
Confidence 33
No 68
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=69.74 E-value=7 Score=42.48 Aligned_cols=80 Identities=26% Similarity=0.359 Sum_probs=50.5
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEe-----------eecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWW-----------GVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWW-----------GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGN 162 (541)
.+.+.+.+.++++|++|++-+.||-=| |.-++. +.+|= +|.+.|++-|++.|||. =|.|=----|
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~-~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD-PKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVS 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB-TTTST-THHHHHHHHHHHTT-EE--EEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC-hhhhC-CcHHHHHHHHHHCCCeE--EEEecccccc
Confidence 467889999999999999999998766 333332 34442 58999999999999999 4444222112
Q ss_pred CCCCCcCCCChhhHh
Q 009162 163 PGDPKWVPLPQWVLE 177 (541)
Q Consensus 163 VGD~~~IpLP~WV~~ 177 (541)
.+-...-.-|.|+..
T Consensus 131 ~~S~l~~~hPdw~l~ 145 (394)
T PF02065_consen 131 PDSDLYREHPDWVLR 145 (394)
T ss_dssp SSSCHCCSSBGGBTC
T ss_pred chhHHHHhCccceee
Confidence 222333346777765
No 69
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=69.54 E-value=9.7 Score=42.78 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccch-----------------HHHHHHHHHhCCCcEEEEEeee
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+.+++...|..||++||++|.+-= +.| .|+.++|-+ ++++++.+++.||+|..=+-|-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 567888999999999999997632 112 244556643 8999999999999996666664
Q ss_pred cCC
Q 009162 158 QCG 160 (541)
Q Consensus 158 qCG 160 (541)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 454
No 70
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.76 E-value=12 Score=36.96 Aligned_cols=51 Identities=20% Similarity=0.488 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCccc--cc--chHHHHHHHHHhCCCcEEEEEe
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DW--RGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dW--s~Y~~l~~mv~~~GLKv~~vms 155 (541)
-++..|+.++++|+++|++ |+.. +..| ++ ..-+++.++++++||++..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~~----~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGGR----PHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccCC----ccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5899999999999999998 3210 1111 12 2467788999999999854433
No 71
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=67.09 E-value=4.7 Score=43.43 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe---EE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVE---VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
.+-.+...+++++++|++||++. +| |+..+.+. + .-.+++-++++++||+|..|..
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v~~ 89 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMVTT 89 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEeec
Confidence 33456788999999999999864 12 33332110 1 2267899999999999855443
No 72
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=66.57 E-value=18 Score=32.67 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhC-CCcEEEEEeee
Q 009162 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKVRALLAFH 157 (541)
Q Consensus 96 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv~~vmsFH 157 (541)
.+.+...++.||+.|||.|.+..= ++-.. |.- ---.++++.+++++. |++| |..+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~~-~~~-~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKGN-PHG-PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecCC-CCC-CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 678888999999999998887542 22221 111 334499999999999 9988 88877
No 73
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=66.54 E-value=6.1 Score=40.78 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=57.3
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHh
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLE 177 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~ 177 (541)
+-++++.++|+++|.+..-|+...--+|..|. +-+++++++-+++ + . +| .|-||+. -++=.++.+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~--~i--lh~cG~~------~~~l~~~~~ 242 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P--TI--LHICGNT------TPILEYIAQ 242 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C--cE--EEECCCC------hhHHHHHHH
Confidence 44555667899999998889844322677777 9999999999998 2 2 13 5889742 112223333
Q ss_pred hhhcCCCceeeCCCCCccccceecccCcccccCCCCc
Q 009162 178 EIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSP 214 (541)
Q Consensus 178 ~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTp 214 (541)
...|++-.|.. .--.|....--|+..+.+|--|
T Consensus 243 ---~g~d~~~~d~~-~dl~e~~~~~g~~~~i~Gnidp 275 (326)
T cd03307 243 ---CGFDGISVDEK-VDVKTAKEIVGGRAALIGNVSP 275 (326)
T ss_pred ---cCCCeeccccc-CCHHHHHHHcCCceEEEeCCCh
Confidence 34455555532 2223333333444444444444
No 74
>PRK12313 glycogen branching enzyme; Provisional
Probab=65.94 E-value=12 Score=42.57 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=42.3
Q ss_pred CeecCHHHHHHHH-HHHHHcCcceEEE-eEEeeecccCCCcccccc-----------------hHHHHHHHHHhCCCcEE
Q 009162 91 GKVKRRKAMAQSF-KALAAAGVEGVVV-EVWWGVVERDRPGVYDWR-----------------GYFDLIVLASNCGLKVR 151 (541)
Q Consensus 91 ~~~~~~~~~~~~L-~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~ 151 (541)
+..-+-+.+...| ..||++||+.|.+ +|+ | .|...+|- .+++|++.+++.||+|.
T Consensus 164 ~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vi 237 (633)
T PRK12313 164 GRPLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVI 237 (633)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3344567777775 9999999999985 332 2 13333343 48999999999999995
Q ss_pred EEEee
Q 009162 152 ALLAF 156 (541)
Q Consensus 152 ~vmsF 156 (541)
.=+-|
T Consensus 238 lD~V~ 242 (633)
T PRK12313 238 LDWVP 242 (633)
T ss_pred EEECC
Confidence 54445
No 75
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.39 E-value=85 Score=31.48 Aligned_cols=65 Identities=14% Similarity=0.192 Sum_probs=42.1
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
..+|+.+|.=+..+ +. ..++-++.++++|+++|.+... -+|. .....++.+.++++||+..+.
T Consensus 73 ~~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~~~~ 135 (244)
T PRK13125 73 VSVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKPVFF 135 (244)
T ss_pred CCCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCEEEE
Confidence 45677667544211 22 3445578889999999999421 0121 134678999999999999554
Q ss_pred Ee
Q 009162 154 LA 155 (541)
Q Consensus 154 ms 155 (541)
++
T Consensus 136 v~ 137 (244)
T PRK13125 136 TS 137 (244)
T ss_pred EC
Confidence 44
No 76
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=65.31 E-value=10 Score=39.28 Aligned_cols=95 Identities=13% Similarity=0.012 Sum_probs=57.2
Q ss_pred HHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhC--CCcEEEEEeeecCCCCCCCCCcCCCChhhHh
Q 009162 103 FKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLPQWVLE 177 (541)
Q Consensus 103 L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~ 177 (541)
++++.++|+++|.+.-=|+- -=+|.+|+ +-+++++++-+++. +.. | .|-|||. -++-.++.+
T Consensus 186 ~~~~~eaGad~i~i~d~~~~--~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~------~~~~~~~~~ 252 (338)
T TIGR01464 186 LVEQVKAGAQAVQIFDSWAG--ALSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGA------GHLLEELAE 252 (338)
T ss_pred HHHHHHcCCCEEEEECCccc--cCCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCc------HHHHHHHHh
Confidence 34466799999886443553 24577777 99999999999987 433 3 4556643 134445555
Q ss_pred hhhcCCCceeeCCCCCccccceecccCcccccCCCCc
Q 009162 178 EIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSP 214 (541)
Q Consensus 178 ~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTp 214 (541)
...|++-.|..- --+|.....-|+..+.+|-.|
T Consensus 253 ---~~~~~~s~d~~~-dl~e~~~~~~~~~~i~Gni~p 285 (338)
T TIGR01464 253 ---TGADVVGLDWTV-DLKEARKRVGPGVAIQGNLDP 285 (338)
T ss_pred ---cCCCEEEeCCCC-CHHHHHHHhCCCeeEEeCCCh
Confidence 345777667542 233444444455555555443
No 77
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.82 E-value=15 Score=39.42 Aligned_cols=59 Identities=29% Similarity=0.409 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeeccc----CCCcccccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVER----DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
.-+.-|..||++||.-|.+-||=-=-.. -|-|.=|-..--++.+-+++.|+|| .+-||-
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 3345688999999999999999322111 1234445555566667777889999 999994
No 78
>PLN02229 alpha-galactosidase
Probab=64.77 E-value=15 Score=40.62 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeEEeeecccCC-------CcccccchHHHHHHHHHhCCCcEEEEE--eeecC
Q 009162 94 KRRKAMAQSFKA-----LAAAGVEGVVVEVWWGVVERDR-------PGVYDWRGYFDLIVLASNCGLKVRALL--AFHQC 159 (541)
Q Consensus 94 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~-------p~~YdWs~Y~~l~~mv~~~GLKv~~vm--sFHqC 159 (541)
.+++.+.+...+ ||.+|.+-|.||-=|...++.. |.+|- +|.+.|++.+++.|||.=.-. ....|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 467778888777 5999999999998664333322 34444 689999999999999983322 22345
Q ss_pred CCCCC
Q 009162 160 GSGPG 164 (541)
Q Consensus 160 GGNVG 164 (541)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 55444
No 79
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=63.75 E-value=16 Score=36.12 Aligned_cols=53 Identities=19% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccC-CCcccccc--hHHHHHHHHHhCCCcEEEE
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERD-RPGVYDWR--GYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p~~YdWs--~Y~~l~~mv~~~GLKv~~v 153 (541)
-.++..|+.++++|+++|++.+- +.. .....+|+ .-+++.++++++||++..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999999532 211 12234564 3678999999999999654
No 80
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=63.41 E-value=7.4 Score=40.16 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
.+-++++.++|+++|.+..=|+.-.--+|..|. +-+++++++-+++. .++ .|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~i--lH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PTI--LHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----CcE--EEECC
Confidence 344556778999999888877642223455555 88999999999876 223 58887
No 81
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=63.33 E-value=12 Score=38.82 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=48.4
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhC--CCcEEEEEeeecCCCCCCCCCcCCCChhhH
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLPQWVL 176 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~--GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~ 176 (541)
-.+++.++|+++|.+.-=|+-+ -+|.+|+ +-+++++++-+++. |.++ .|-|||+. ++-.++.
T Consensus 182 ~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~~------~~~~~~~ 248 (335)
T cd00717 182 YLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGAG------GLLEDLA 248 (335)
T ss_pred HHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCCH------HHHHHHH
Confidence 3344566999999754435532 4577777 99999999999998 4433 56677431 5556666
Q ss_pred hhhhcCCCceeeCCC
Q 009162 177 EEIDKDPDLAYSDRF 191 (541)
Q Consensus 177 ~~g~~~pdi~ytD~~ 191 (541)
+. ..|++-.|..
T Consensus 249 ~~---~~~~~s~d~~ 260 (335)
T cd00717 249 QL---GADVVGLDWR 260 (335)
T ss_pred hc---CCCEEEeCCC
Confidence 63 3566666654
No 82
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=62.58 E-value=6.4 Score=38.48 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=37.4
Q ss_pred ceEE-eeecceeccC----------CeecC-HHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHH
Q 009162 77 PVFV-KLPEDSTMIG----------GKVKR-RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLAS 144 (541)
Q Consensus 77 pv~V-MlPLd~V~~~----------~~~~~-~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~ 144 (541)
|+-| .||+..|+.. ++..+ ++.++++|.+||+.||..|-+ ++|...=..|... .|.+.++
T Consensus 26 P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~ 97 (168)
T PF05706_consen 26 PIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQ 97 (168)
T ss_dssp ----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHH
T ss_pred ceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHH
Confidence 4444 4666666532 33333 478999999999999999865 6776534445544 5668999
Q ss_pred hCCCcE
Q 009162 145 NCGLKV 150 (541)
Q Consensus 145 ~~GLKv 150 (541)
++||++
T Consensus 98 ~~Gi~~ 103 (168)
T PF05706_consen 98 ARGIAW 103 (168)
T ss_dssp HTT-EE
T ss_pred HcCCEE
Confidence 999987
No 83
>PRK09989 hypothetical protein; Provisional
Probab=61.77 E-value=19 Score=35.57 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
-+...|++++++|.++|++.. +..++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 478899999999999999932 22233 3678888999999983
No 84
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.56 E-value=98 Score=32.19 Aligned_cols=132 Identities=18% Similarity=0.251 Sum_probs=82.2
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEE---eEE--eeecccCC-CcccccchHHHHHHHHHhCCCcEEEEEee---------
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVV---EVW--WGVVERDR-PGVYDWRGYFDLIVLASNCGLKVRALLAF--------- 156 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVW--WGiVE~~~-p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF--------- 156 (541)
.+-..+.+++.+..|...|.+.+++ |-+ -|.-|-.. .+.|.=+.++++.+.|++.|+.|+|-+-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~ 91 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILK 91 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHh
Confidence 5677899999999999999999976 323 34333322 67888889999999999999999775421
Q ss_pred ----ecCCCCCC---CCCcCCCCh---hhHhhhhcCCCceeeCCCCCccccceecccCcccccC---------CCCchHH
Q 009162 157 ----HQCGSGPG---DPKWVPLPQ---WVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLR---------GRSPIQA 217 (541)
Q Consensus 157 ----HqCGGNVG---D~~~IpLP~---WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~---------GRTpiq~ 217 (541)
++.. .++ ++-++.-|. .|.+..+.--++| ..+++-+|+||.+.++ .++..+.
T Consensus 92 ~~~~~~l~-~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f--------~s~~~HIG~DE~~~~g~~~~~~~~~~~~~~~l 162 (301)
T cd06565 92 HPEFRHLR-EVDDPPQTLCPGEPKTYDFIEEMIRQVLELH--------PSKYIHIGMDEAYDLGRGRSLRKHGNLGRGEL 162 (301)
T ss_pred Cccccccc-ccCCCCCccCCCChhHHHHHHHHHHHHHHhC--------CCCeEEECCCcccccCCCHHHHHhcCCCHHHH
Confidence 1110 011 111111121 1111111100111 1478999999998653 3456677
Q ss_pred HHHHHHHHHHHHhhh
Q 009162 218 YTDFMRNFRDTFRPL 232 (541)
Q Consensus 218 Y~dfm~sF~~~f~~~ 232 (541)
|.+|++...+...+.
T Consensus 163 ~~~~~~~v~~~v~~~ 177 (301)
T cd06565 163 YLEHLKKVLKIIKKR 177 (301)
T ss_pred HHHHHHHHHHHHHHc
Confidence 888888777777655
No 85
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=60.41 E-value=48 Score=33.28 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=45.3
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
.+|+.+|.=++.+- ...+++-++.++++|++||.++-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 67888885543221 123577799999999999999521 1 1 356789999999999997777
Q ss_pred e
Q 009162 155 A 155 (541)
Q Consensus 155 s 155 (541)
+
T Consensus 137 ~ 137 (242)
T cd04724 137 A 137 (242)
T ss_pred C
Confidence 7
No 86
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=59.72 E-value=23 Score=38.86 Aligned_cols=68 Identities=21% Similarity=0.174 Sum_probs=48.7
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc---c-------------------cchHHHHHHHHHhCCCcEE
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY---D-------------------WRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y---d-------------------Ws~Y~~l~~mv~~~GLKv~ 151 (541)
..++.+...|..||.+||++|-+.-.+--........| | ..-+++|++.|++.|+||.
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 34678999999999999999987654322211111223 2 2347899999999999998
Q ss_pred EEEeeecCCC
Q 009162 152 ALLAFHQCGS 161 (541)
Q Consensus 152 ~vmsFHqCGG 161 (541)
+=+-|--|++
T Consensus 99 ~D~V~NH~~~ 108 (479)
T PRK09441 99 ADVVLNHKAG 108 (479)
T ss_pred EEECcccccC
Confidence 8888877775
No 87
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=59.64 E-value=20 Score=35.25 Aligned_cols=42 Identities=33% Similarity=0.491 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
-++..|+.++++|.+||++.. | ++. ...++.++++++||++.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~---------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF---------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC---------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 588899999999999998832 1 122 26778889999999984
No 88
>PLN02808 alpha-galactosidase
Probab=59.13 E-value=18 Score=39.56 Aligned_cols=59 Identities=25% Similarity=0.294 Sum_probs=45.9
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeEEeeecccCCCccccc------chHHHHHHHHHhCCCcEEE
Q 009162 94 KRRKAMAQSFKA-----LAAAGVEGVVVEVWWGVVERDRPGVYDW------RGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 94 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv~~ 152 (541)
.+++.+.+...+ ||++|.+-|.||-=|-..++...|+.-. +|.+.|++.|++.|||.=.
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEE
Confidence 467778887777 6999999999998887666554443222 6899999999999999843
No 89
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=59.10 E-value=16 Score=38.33 Aligned_cols=97 Identities=15% Similarity=0.035 Sum_probs=57.7
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCC--CcEEEEEeeecCCCCCCCCCcCCCChhh
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCG--LKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~G--LKv~~vmsFHqCGGNVGD~~~IpLP~WV 175 (541)
.-++++.++|+++|.+.-=|+-+ -+|.+|+ +-+.+++++-+++.| .++ .|-|||.. ++-.++
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~~------~~~~~~ 256 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVPV-----ILFGKGAG------ELLEAM 256 (346)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCcH------HHHHHH
Confidence 34455667999999754435532 4577777 999999999999984 433 37777432 223345
Q ss_pred HhhhhcCCCceeeCCCCCccccceecccCcccccCCCCc
Q 009162 176 LEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSP 214 (541)
Q Consensus 176 ~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTp 214 (541)
.+ ...|++-.|.. .--+|.....-|+.++.+|-.|
T Consensus 257 ~~---~~~~~is~d~~-~dl~~~k~~~g~~~~i~Gni~p 291 (346)
T PRK00115 257 AE---TGADVVGLDWT-VDLAEARRRVGDKKALQGNLDP 291 (346)
T ss_pred Hh---cCCCEEeeCCC-CCHHHHHHHcCCCeEEEeCCCh
Confidence 44 34567766653 2223444444444555554443
No 90
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=59.03 E-value=49 Score=35.18 Aligned_cols=90 Identities=21% Similarity=0.202 Sum_probs=59.3
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhh
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEID 180 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~ 180 (541)
.+|+...+.||+.|.|-.-+...+ .-.+.++.+|+.|+++.+.+. ...-.-|..+.+..+
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~~----------~~~~~i~~ak~~G~~v~~~l~----------~a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEAD----------VSEQHIGLARELGMDTVGFLM----------MSHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchHH----------HHHHHHHHHHHCCCeEEEEEE----------eccCCCHHHHHHHHH
Confidence 568899999999999887443322 358999999999999988766 222334666666432
Q ss_pred ----cCCC-ceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHH
Q 009162 181 ----KDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (541)
Q Consensus 181 ----~~pd-i~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f 229 (541)
.-+| |.++|-.|.- +|-+ -.++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~------------------~P~~-v~~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL------------------LPED-VRDRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC------------------CHHH-HHHHHHHHHHhc
Confidence 2233 5566766653 4744 445666666655
No 91
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=58.90 E-value=10 Score=39.90 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=35.7
Q ss_pred HHHc-CcceEEEeEEeee-----cccCCCcccccchHHHHHHHHHhCC-CcEEEEEeeecCC
Q 009162 106 LAAA-GVEGVVVEVWWGV-----VERDRPGVYDWRGYFDLIVLASNCG-LKVRALLAFHQCG 160 (541)
Q Consensus 106 LK~~-GVdGV~vdVWWGi-----VE~~~p~~YdWs~Y~~l~~mv~~~G-LKv~~vmsFHqCG 160 (541)
..++ |+|+|.+--.|+. +.++-=.+|-|-+++++++-+++.| .+ ..+|.||
T Consensus 164 qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG 221 (321)
T cd03309 164 RIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCG 221 (321)
T ss_pred HHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCC
Confidence 3334 9999998666765 4433233444999999999999984 33 3459998
No 92
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=58.69 E-value=53 Score=32.23 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=49.0
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccC------CCcccccchHHHHHHHHHhCCC
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERD------RPGVYDWRGYFDLIVLASNCGL 148 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~------~p~~YdWs~Y~~l~~mv~~~GL 148 (541)
.+++.+|.+.. +..++.++++|++.|.+-.=-. +.. ....-+++...+.++.+++.|+
T Consensus 66 ~~~~~~l~~~~--------------~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~ 129 (265)
T cd03174 66 NVKLQALVRNR--------------EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGL 129 (265)
T ss_pred CcEEEEEccCc--------------hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence 56777776542 7789999999999999887422 100 1222367778899999999999
Q ss_pred cEEEEEe-eecC
Q 009162 149 KVRALLA-FHQC 159 (541)
Q Consensus 149 Kv~~vms-FHqC 159 (541)
++++.+. ...|
T Consensus 130 ~v~~~~~~~~~~ 141 (265)
T cd03174 130 EVEGSLEDAFGC 141 (265)
T ss_pred eEEEEEEeecCC
Confidence 9988883 4444
No 93
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=58.05 E-value=20 Score=43.97 Aligned_cols=62 Identities=19% Similarity=0.294 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-EE-eeeccc-C----------CCcccccc-------------------------hH
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVE-VW-WGVVER-D----------RPGVYDWR-------------------------GY 136 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vd-VW-WGiVE~-~----------~p~~YdWs-------------------------~Y 136 (541)
+-.+|...|..||++||+.|.+- |+ .+.+.. . +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 45788889999999999999763 43 333321 0 12345554 38
Q ss_pred HHHHHHHHhCCCcEEEEEee
Q 009162 137 FDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 137 ~~l~~mv~~~GLKv~~vmsF 156 (541)
+++++-++++||+|+.=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 89999999999999555555
No 94
>PLN02389 biotin synthase
Probab=58.01 E-value=19 Score=38.84 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCC-------cccccchHHHHHHHHHhCCCcE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
+.+|++||++|++.+.+ .+|.. | ..-+|+.+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~-----~LeTs-~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH-----NLDTS-REYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEe-----eecCC-hHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 57889999999999988 45631 2 1238999999999999999988
No 95
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=56.67 E-value=30 Score=38.81 Aligned_cols=66 Identities=12% Similarity=0.241 Sum_probs=49.1
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc-------------ccchHHHHHHHHHhCCCcEEEEEeeecC
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQC 159 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsFHqC 159 (541)
+-+-+.+.+.|..||++||++|-+.--.-.-+ ....| ....+++|++.|++.||||..=+-+.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 46788999999999999999997754332111 11234 3456899999999999999877777666
Q ss_pred C
Q 009162 160 G 160 (541)
Q Consensus 160 G 160 (541)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 5
No 96
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.30 E-value=8.5 Score=38.01 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
..+.+...++|+|+|.+=++|+.+.+. ...+...--.++++.|+++|||+..-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~-~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSG-NEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTT-HHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeeccccccccc-cHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 678888899999999999999998865 56677777788888999999999444
No 97
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=56.23 E-value=10 Score=27.23 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCcceEEEe
Q 009162 100 AQSFKALAAAGVEGVVVE 117 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vd 117 (541)
.+..++|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345578888999999987
No 98
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=56.16 E-value=35 Score=38.10 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=49.2
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCC-Ccccc-------------cchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDR-PGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~-p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
.-|-+.+.+.|..||++||++|-+.=. .|..+ ...|+ ...+++|++.|++.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 568899999999999999999976543 23211 22332 45788999999999999977777766
Q ss_pred CCC
Q 009162 159 CGS 161 (541)
Q Consensus 159 CGG 161 (541)
++.
T Consensus 101 ~s~ 103 (539)
T TIGR02456 101 TSD 103 (539)
T ss_pred CCC
Confidence 653
No 99
>PRK10785 maltodextrin glucosidase; Provisional
Probab=55.99 E-value=31 Score=39.22 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc-------------cchHHHHHHHHHhCCCcEEEEEeeecCCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQCGS 161 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGG 161 (541)
|-+.+.+.|-.||++||++|-+-= +.|..+--.|+ .+.+++|++.|++.|+||..=+-|.-||.
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 679999999999999999998754 23433333343 35789999999999999977777766662
Q ss_pred CCCCCCcCCCChhhHhhhh-----------cCCCceeeCCCCCccccceec-ccCcccccCCCCchHHHHHHHH
Q 009162 162 GPGDPKWVPLPQWVLEEID-----------KDPDLAYSDRFGRRNMEYISL-GCDILPVLRGRSPIQAYTDFMR 223 (541)
Q Consensus 162 NVGD~~~IpLP~WV~~~g~-----------~~pdi~ytD~~G~rn~E~LSl-g~D~~pv~~GRTpiq~Y~dfm~ 223 (541)
. -.|+.+... .+.|-+.-+..|. |.+| +++.+|-|.=.. +..++++.
T Consensus 254 ~---------~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~----~~~w~g~~~lPdLN~~n--p~v~~~l~ 312 (598)
T PRK10785 254 S---------HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR----ALDWLGYASLPKLDFQS--EEVVNEIY 312 (598)
T ss_pred C---------CHHHHHhhccccccccCCCCCcceeeEECCCCC----cCCcCCCCcCccccCCC--HHHHHHHH
Confidence 1 137654321 1223444444442 3343 356788776444 45666665
No 100
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=55.80 E-value=35 Score=36.60 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=55.3
Q ss_pred ecCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCCC
Q 009162 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD 165 (541)
..+.+.+.+-++.+++.| +|++.+|.+|+.- -+.|.|+ ..+++++.+++.|+|+ ++..|-
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~P------- 105 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKV--VLWVHP------- 105 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEES-------
T ss_pred CCCHHHHHHHHHHHHHcCCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEE--EEEeec-------
Confidence 356888899999998865 6899999998762 2244444 5799999999999999 555542
Q ss_pred CCcCCCChh---hHhhhhcCCCceeeCCCCCc
Q 009162 166 PKWVPLPQW---VLEEIDKDPDLAYSDRFGRR 194 (541)
Q Consensus 166 ~~~IpLP~W---V~~~g~~~pdi~ytD~~G~r 194 (541)
.|....- ..+++. ..++++++.+|..
T Consensus 106 --~v~~~~~~~~~~~~~~-~~~~~v~~~~g~~ 134 (441)
T PF01055_consen 106 --FVSNDSPDYENYDEAK-EKGYLVKNPDGSP 134 (441)
T ss_dssp --EEETTTTB-HHHHHHH-HTT-BEBCTTSSB
T ss_pred --ccCCCCCcchhhhhHh-hcCceeecccCCc
Confidence 2332222 223333 2488999999943
No 101
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.47 E-value=65 Score=34.23 Aligned_cols=92 Identities=20% Similarity=0.210 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhh
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEI 179 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g 179 (541)
..+|+...+.||+.|.|-.-.... .--.+.++.+|+.|+++++.+. ++... -|.-+.+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~---------~s~~~-~~e~l~~~a 149 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLM---------MSHMT-PPEKLAEQA 149 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEE---------cccCC-CHHHHHHHH
Confidence 357899999999999988743322 2368999999999999976554 11223 366666533
Q ss_pred h----cCCC-ceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009162 180 D----KDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (541)
Q Consensus 180 ~----~~pd-i~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~ 230 (541)
+ .-+| |.++|-.|.- +| +...++.+.+++++.
T Consensus 150 ~~~~~~Ga~~i~i~DT~G~~------------------~P-~~v~~~v~~l~~~l~ 186 (333)
T TIGR03217 150 KLMESYGADCVYIVDSAGAM------------------LP-DDVRDRVRALKAVLK 186 (333)
T ss_pred HHHHhcCCCEEEEccCCCCC------------------CH-HHHHHHHHHHHHhCC
Confidence 2 2233 5666666543 36 556677777776654
No 102
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=54.92 E-value=17 Score=37.30 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=38.9
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCc---ccccchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPG---VYDWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
.-++++.++|+|+|.+.- +...--+|. +|-+-+++++++.+++.|.+ ..-+|-||
T Consensus 186 ~~~~~~~~~G~d~i~~~d--~~~~~isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG 243 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD--SSGSLISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICG 243 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE--TTGGGS-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETT
T ss_pred HHHHHHHHhCCCcccccc--cccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECC
Confidence 345667799999997766 333333454 67899999999999999993 23568998
No 103
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.50 E-value=55 Score=33.01 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=60.3
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhh
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEID 180 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~ 180 (541)
.+++..++.|++.|.+-+-...+ .-..++++.+++.|+++++.++ |...++ |..+.+..+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~~----------~~~~~~i~~ak~~G~~v~~~~~---------~~~~~~-~~~~~~~~~ 148 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTEA----------DVSEQHIGAARKLGMDVVGFLM---------MSHMAS-PEELAEQAK 148 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhhH----------HHHHHHHHHHHHCCCeEEEEEE---------eccCCC-HHHHHHHHH
Confidence 66788889999999886644432 3568899999999999988775 112233 677766433
Q ss_pred c----CCC-ceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhh
Q 009162 181 K----DPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRP 231 (541)
Q Consensus 181 ~----~pd-i~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~ 231 (541)
+ .+| |.+.|-.|. -+| +...++.+.+++++..
T Consensus 149 ~~~~~G~d~i~l~DT~G~------------------~~P-~~v~~lv~~l~~~~~~ 185 (263)
T cd07943 149 LMESYGADCVYVTDSAGA------------------MLP-DDVRERVRALREALDP 185 (263)
T ss_pred HHHHcCCCEEEEcCCCCC------------------cCH-HHHHHHHHHHHHhCCC
Confidence 2 233 455554443 347 5566777777776653
No 104
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.49 E-value=28 Score=34.32 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+..++.||++|+++|.++- ++++..+..-.++++.++++||.+ |++.|
T Consensus 75 ~~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hhHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 3458999999999998873 334444555788999999999988 66633
No 105
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=54.06 E-value=26 Score=34.74 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
.++..|++++++|.+||++ |+ |.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl---~~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEF---MF------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEE---cC------CCC---CCHHHHHHHHHHcCCcE
Confidence 4888899999999999999 22 111 24788899999999998
No 106
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=53.23 E-value=77 Score=31.65 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
....++.++++||..|.+.-- +...++.+.+++++++.+|.+.+.+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~------------~~~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVST------------DPEDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEES------------SHHHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCC------------CHHHhHHHHHHHhcCCCeEEEEecCC
Confidence 677889999999998843211 11445588999999999999999999
No 107
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.91 E-value=49 Score=34.17 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=47.6
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcc---cccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGV---YDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
|.+.+.+++..--++||++|+..+....|= =+.+|.. +-.++|+.+.+.+++.||.+ +-.+|
T Consensus 35 Csie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 35 CAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred CcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 577899999999999999999988888763 1111211 12668999999999999999 55554
No 108
>PLN02877 alpha-amylase/limit dextrinase
Probab=52.41 E-value=25 Score=42.62 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCcceEEE-eEE-eeec-ccC-----------------------------CCcccccch----------
Q 009162 98 AMAQSFKALAAAGVEGVVV-EVW-WGVV-ERD-----------------------------RPGVYDWRG---------- 135 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~v-dVW-WGiV-E~~-----------------------------~p~~YdWs~---------- 135 (541)
+.-.-|+.||++||..|++ +|+ .+-| |.. ....|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3345688999999999986 666 5444 211 023488976
Q ss_pred --------------HHHHHHHHHhCCCcEEEEEee-ecCC
Q 009162 136 --------------YFDLIVLASNCGLKVRALLAF-HQCG 160 (541)
Q Consensus 136 --------------Y~~l~~mv~~~GLKv~~vmsF-HqCG 160 (541)
++++++-++++||+|+.=+-| |...
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 899999999999999433333 5444
No 109
>PLN00196 alpha-amylase; Provisional
Probab=51.89 E-value=44 Score=36.73 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc------c--------chHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD------W--------RGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd------W--------s~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
..+.+...|..||++||+.|-+.- +.|+.++..|+ - +.+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P---~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPP---PSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---CCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 578899999999999999998874 23433333442 2 258999999999999997766665555
Q ss_pred C
Q 009162 161 S 161 (541)
Q Consensus 161 G 161 (541)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 110
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=51.72 E-value=40 Score=34.81 Aligned_cols=77 Identities=29% Similarity=0.402 Sum_probs=58.9
Q ss_pred CCCCcceEEeeecceeccCCee----cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCC
Q 009162 72 RRNGSPVFVKLPEDSTMIGGKV----KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG 147 (541)
Q Consensus 72 ~~~~vpv~VMlPLd~V~~~~~~----~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 147 (541)
....+|||+|.== .+|.+ ...+.+..++++.|++|++||.+.+- ..+|+.|=.-.++|.+.+. |
T Consensus 48 ~~~~ipv~~MIRP----RgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--g 115 (241)
T COG3142 48 ELSKIPVYVMIRP----RGGDFVYSDDELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--G 115 (241)
T ss_pred hhcCCceEEEEec----CCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--C
Confidence 3478999999743 22222 35578999999999999999999764 4689999999999998877 6
Q ss_pred CcEEEEEeeecCC
Q 009162 148 LKVRALLAFHQCG 160 (541)
Q Consensus 148 LKv~~vmsFHqCG 160 (541)
|.|--=++|-.|-
T Consensus 116 L~vTFHrAFD~~~ 128 (241)
T COG3142 116 LGVTFHRAFDECP 128 (241)
T ss_pred CceeeehhhhhcC
Confidence 6554467777665
No 111
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=51.34 E-value=81 Score=32.21 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=60.7
Q ss_pred HHHHHHHHcCcceEEEeEE---eeecccC-CCcccccchHHHHHHHHHhCCCcEEE-EEeeecCCCCCCCCCcCCCChhh
Q 009162 101 QSFKALAAAGVEGVVVEVW---WGVVERD-RPGVYDWRGYFDLIVLASNCGLKVRA-LLAFHQCGSGPGDPKWVPLPQWV 175 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVW---WGiVE~~-~p~~YdWs~Y~~l~~mv~~~GLKv~~-vmsFHqCGGNVGD~~~IpLP~WV 175 (541)
..+++++..|++.|.+-+= +-+-+.- ...+..+.-..++++++++.|+++++ .|.| + |....+ |..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~--~-----d~~~~~-~~~~ 153 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF--F-----DGYKAN-PEYA 153 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec--c-----ccCCCC-HHHH
Confidence 4677788999999887432 1011110 12244678899999999999999977 3333 1 222233 7777
Q ss_pred Hhhhh----cCC-CceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009162 176 LEEID----KDP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (541)
Q Consensus 176 ~~~g~----~~p-di~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~ 230 (541)
.+..+ .-+ .|.+.|-.|. -||.+ ..++.+.+++++.
T Consensus 154 ~~~~~~~~~~g~~~i~l~DT~G~------------------~~P~~-v~~lv~~l~~~~~ 194 (273)
T cd07941 154 LATLKAAAEAGADWLVLCDTNGG------------------TLPHE-IAEIVKEVRERLP 194 (273)
T ss_pred HHHHHHHHhCCCCEEEEecCCCC------------------CCHHH-HHHHHHHHHHhCC
Confidence 66432 112 3555665554 34755 4556677776553
No 112
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=50.84 E-value=32 Score=35.02 Aligned_cols=95 Identities=13% Similarity=0.193 Sum_probs=54.3
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEe--EEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVE--VWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..+||++..-- ++.+..-+..+..+++|+|+||+- .|+..-+ +--..+|+++++ +.++.|
T Consensus 66 ~~~~vi~gv~~---------~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~-----~~i~~~~~~i~~---~~~~pi- 127 (285)
T TIGR00674 66 GRVPVIAGTGS---------NATEEAISLTKFAEDVGADGFLVVTPYYNKPTQ-----EGLYQHFKAIAE---EVDLPI- 127 (285)
T ss_pred CCCeEEEeCCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCH-----HHHHHHHHHHHh---cCCCCE-
Confidence 46888887532 233445556677799999999983 3333211 112344555544 456665
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCc-eeeCCCCC
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDL-AYSDRFGR 193 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi-~ytD~~G~ 193 (541)
+=+|- . ....++|+.-+.+...++|.| .++|-+|.
T Consensus 128 --~lYn~-P----~~tg~~l~~~~l~~L~~~~~v~giK~s~~d 163 (285)
T TIGR00674 128 --ILYNV-P----SRTGVSLYPETVKRLAEEPNIVAIKEATGN 163 (285)
T ss_pred --EEEEC-c----HHhcCCCCHHHHHHHHcCCCEEEEEeCCCC
Confidence 33331 1 122356777777766677885 55676663
No 113
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=50.75 E-value=54 Score=35.32 Aligned_cols=74 Identities=20% Similarity=0.133 Sum_probs=53.9
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
+-|+++-.| |.+.+.+++...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-
T Consensus 117 ~~~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t 187 (360)
T PRK12595 117 GNQSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--IS 187 (360)
T ss_pred CCeeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EE
Confidence 345666666 567899999999999999999988866653122222234445789999999999999998 44
Q ss_pred eee
Q 009162 155 AFH 157 (541)
Q Consensus 155 sFH 157 (541)
+.|
T Consensus 188 ~v~ 190 (360)
T PRK12595 188 EIV 190 (360)
T ss_pred eeC
Confidence 533
No 114
>PRK07360 FO synthase subunit 2; Reviewed
Probab=50.66 E-value=13 Score=39.55 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeec-c--------cCCCcccccchHHHHHHHHHhCCCcE
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVV-E--------RDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiV-E--------~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
.+..|++||++|++.+. +.- | .-.|++-.+..|.+.++.+++.||++
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~ 217 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPT 217 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 36789999999999994 211 1 11477778888899999999999999
No 115
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=50.60 E-value=48 Score=33.77 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=47.4
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccC-CC--cccccchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERD-RP--GVYDWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~-~p--~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
.+++++.+.+.++.+++.|++.|-+-.=++..-+. .+ ..++-...+++++.+++.|+++ ..|.++
T Consensus 115 ~~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 115 VVDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred eecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 46788999999999999999999765533321111 11 2567788999999999999976 457543
No 116
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=50.60 E-value=38 Score=38.25 Aligned_cols=65 Identities=15% Similarity=0.324 Sum_probs=47.0
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeeccc-CCCcccc-------------cchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVER-DRPGVYD-------------WRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~-~~p~~Yd-------------Ws~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
.-+.+.+.+.|..||++||++|-+.=-+ +. .....|+ .+.+++|++.++++|+||..=+-+--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4688999999999999999999774432 11 1112232 24589999999999999976666655
Q ss_pred CC
Q 009162 159 CG 160 (541)
Q Consensus 159 CG 160 (541)
|+
T Consensus 106 ~s 107 (551)
T PRK10933 106 TS 107 (551)
T ss_pred cc
Confidence 54
No 117
>PLN02417 dihydrodipicolinate synthase
Probab=48.75 E-value=1.1e+02 Score=31.44 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=53.2
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeE--EeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEV--WWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV--WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..+||.+..-- ++.+.--...+..+++|+|+||+-- ++..- . ++..+.++-+.++.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~~-----~----~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKTS-----Q----EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCCC-----H----HHHHHHHHHHHhhC----
Confidence 45777665432 3445555667788999999999832 22110 1 23333334444444
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCc-eeeCCCCC
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDL-AYSDRFGR 193 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi-~ytD~~G~ 193 (541)
||+=++- . + ...+.||.-+.+...++|.| -++|.+|.
T Consensus 127 pi~lYn~-P---~-~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV-P---G-RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC-h---h-HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 5554442 1 1 22356777777776678884 56887775
No 118
>PLN02433 uroporphyrinogen decarboxylase
Probab=48.13 E-value=31 Score=36.27 Aligned_cols=76 Identities=16% Similarity=0.012 Sum_probs=47.4
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccc---cchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhh
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYD---WRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEE 178 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd---Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~ 178 (541)
-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||. . ++-.++.+
T Consensus 184 ~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~-----~--~~~~~~~~- 251 (345)
T PLN02433 184 YVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGS-----G--GLLERLAG- 251 (345)
T ss_pred HHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCC-----H--HHHHHHHh-
Confidence 3445567999999765546642 4577777 999999999999862122 234588882 1 33344444
Q ss_pred hhcCCCceeeCCC
Q 009162 179 IDKDPDLAYSDRF 191 (541)
Q Consensus 179 g~~~pdi~ytD~~ 191 (541)
...|++-.|..
T Consensus 252 --~~~~~i~~d~~ 262 (345)
T PLN02433 252 --TGVDVIGLDWT 262 (345)
T ss_pred --cCCCEEEcCCC
Confidence 34466665543
No 119
>PRK09505 malS alpha-amylase; Reviewed
Probab=47.73 E-value=38 Score=39.52 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-EEeeecccC-----------CCccc-------------ccchHHHHHHHHHhCCCc
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVE-VWWGVVERD-----------RPGVY-------------DWRGYFDLIVLASNCGLK 149 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vd-VWWGiVE~~-----------~p~~Y-------------dWs~Y~~l~~mv~~~GLK 149 (541)
|.+.+.+.|..||++||++|-+. ++=.+-... +...| ..+.+++|++-+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 57889999999999999999864 221110000 01111 245789999999999999
Q ss_pred EEEEEee
Q 009162 150 VRALLAF 156 (541)
Q Consensus 150 v~~vmsF 156 (541)
|..=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9655555
No 120
>PLN02692 alpha-galactosidase
Probab=47.50 E-value=34 Score=37.79 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=41.4
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeEEeeecccCCCccccc------chHHHHHHHHHhCCCcE
Q 009162 94 KRRKAMAQSFKA-----LAAAGVEGVVVEVWWGVVERDRPGVYDW------RGYFDLIVLASNCGLKV 150 (541)
Q Consensus 94 ~~~~~~~~~L~~-----LK~~GVdGV~vdVWWGiVE~~~p~~YdW------s~Y~~l~~mv~~~GLKv 150 (541)
.+++.+.+...+ ||++|.+-|.||.=|-..++...|+.-. +|.+.|++.|++.|||.
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 356666666664 4888999999998664434433333332 68999999999999998
No 121
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=46.72 E-value=61 Score=34.61 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCcceEEEeE--Eeeeccc--CCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChh
Q 009162 99 MAQSFKALAAAGVEGVVVEV--WWGVVER--DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW 174 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdV--WWGiVE~--~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~W 174 (541)
...++++++++|++.|.+-+ +-..+|. .......++...+.++.+++.|+++++.+. |.... -|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e---------da~r~-~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE---------DATRT-DIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe---------ecCCC-CHHH
Confidence 35778889999999888743 3222221 112344577788999999999999865553 22233 3777
Q ss_pred hHhhhhc----CC-CceeeCCCCC
Q 009162 175 VLEEIDK----DP-DLAYSDRFGR 193 (541)
Q Consensus 175 V~~~g~~----~p-di~ytD~~G~ 193 (541)
+.+..+. -+ .|.+.|-.|.
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~ 166 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGV 166 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCc
Confidence 7764321 12 2556665553
No 122
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=46.68 E-value=47 Score=34.74 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=45.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccC----CCcccccchHHHHHHHHHhCCCcEEEEEeeec-CCCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERD----RPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ-CGSGP 163 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~----~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq-CGGNV 163 (541)
.+-+..++-..-..++|++.|.||..|---+.. --..+.+....+|++.+++.|.+| +|-.|. .+||+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHSETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEECCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeCCcchhh
Confidence 355677777888899999999999999753321 124567899999999999999999 555553 33443
No 123
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.82 E-value=1.2e+02 Score=31.81 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred CCCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 72 RRNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 72 ~~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
....+|+-+|.=... .-...+++=++.+|++|||||.|.- --+ ..=+++.+.++++||+.+
T Consensus 91 ~~~~~Pivlm~Y~Np-------i~~~Gie~F~~~~~~~GvdGlivpD----------LP~--ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 91 KGVKVPIVLMTYYNP-------IFNYGIEKFLRRAKEAGVDGLLVPD----------LPP--EESDELLKAAEKHGIDPI 151 (265)
T ss_pred cCCCCCEEEEEeccH-------HHHhhHHHHHHHHHHcCCCEEEeCC----------CCh--HHHHHHHHHHHHcCCcEE
Confidence 346788888876643 3346788889999999999998852 111 123478888899999997
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhc-CCCceeeCCCCCcc
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDK-DPDLAYSDRFGRRN 195 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~-~pdi~ytD~~G~rn 195 (541)
.+.+ ++-| +.++-++.+. ..-|+|..+.|..-
T Consensus 152 ~lva-----------Ptt~-~~rl~~i~~~a~GFiY~vs~~GvTG 184 (265)
T COG0159 152 FLVA-----------PTTP-DERLKKIAEAASGFIYYVSRMGVTG 184 (265)
T ss_pred EEeC-----------CCCC-HHHHHHHHHhCCCcEEEEecccccC
Confidence 7665 3333 4566665443 35588888876543
No 124
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=45.75 E-value=63 Score=33.35 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=64.6
Q ss_pred CCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 73 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
...+|+.+|.=++.|- .-.+++-++.++++||+||-++-- | +.-..++.+.++++||+...
T Consensus 89 ~~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 89 EIKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELIL 149 (263)
T ss_pred CCCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEE
Confidence 3568988887774331 236788899999999999999753 1 24477999999999999988
Q ss_pred EEeeecCCCCCCCCCcCCCChhhHhhhhcCCC-ceeeCCCCCc
Q 009162 153 LLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGRR 194 (541)
Q Consensus 153 vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pd-i~ytD~~G~r 194 (541)
.++ ++- .+..+..+.+.-.. |++..+.|..
T Consensus 150 lv~-----------PtT-~~eri~~i~~~a~gFIY~vS~~GvT 180 (263)
T CHL00200 150 LIA-----------PTS-SKSRIQKIARAAPGCIYLVSTTGVT 180 (263)
T ss_pred EEC-----------CCC-CHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 777 222 36788777665554 4444666653
No 125
>PRK08508 biotin synthase; Provisional
Probab=44.98 E-value=2.2e+02 Score=29.14 Aligned_cols=55 Identities=11% Similarity=-0.055 Sum_probs=39.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE-eEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVV-EVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
.+++.+.+..+.+++.|+..+.+ +-+ - +....++++|.++++.+++.++++.+..
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg-~-----~~~~~~~e~~~ei~~~ik~~~p~l~i~~ 95 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSG-R-----GLDDKKLEYVAEAAKAVKKEVPGLHLIA 95 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecc-C-----CCCcccHHHHHHHHHHHHhhCCCcEEEe
Confidence 45677888888888999988865 211 1 1223478899999999999887764433
No 126
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=44.59 E-value=17 Score=38.06 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCcceEEE---eEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 100 AQSFKALAAAGVEGVVV---EVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
+..|++||+||++.+.. +.. -.+...-.|++..+..+.+.+++++++||++-..
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~ 198 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTAT 198 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccce
Confidence 68899999999998851 111 1111222456667777799999999999998443
No 127
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=44.55 E-value=56 Score=33.86 Aligned_cols=71 Identities=13% Similarity=0.260 Sum_probs=47.6
Q ss_pred HHHHHHHHH---HcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCC------CCCcC
Q 009162 99 MAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG------DPKWV 169 (541)
Q Consensus 99 ~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG------D~~~I 169 (541)
++.++.+|| ++|++.+..-. -||-+.|.+..+.+++.|+++-+|-.+=-+. |.. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCC
Confidence 455566665 49999887543 3788899999999999988875543322211 000 13448
Q ss_pred CCChhhHhhhhc
Q 009162 170 PLPQWVLEEIDK 181 (541)
Q Consensus 170 pLP~WV~~~g~~ 181 (541)
.+|.||.+..++
T Consensus 215 ~vP~~l~~~l~~ 226 (281)
T TIGR00677 215 KIPQEIMSRLEP 226 (281)
T ss_pred CCCHHHHHHHHh
Confidence 899999997653
No 128
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.53 E-value=45 Score=34.33 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=48.2
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
.+|+||-+-.|=-+ ......+++-|+..|++|++.|+|. .|--...=+-..++++++++.|||+.+=
T Consensus 53 ~~V~v~~GGtl~E~-----~~~q~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~E 119 (237)
T TIGR03849 53 YGIKVYPGGTLFEI-----AHSKGKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSE 119 (237)
T ss_pred cCCeEeCCccHHHH-----HHHhhhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEecc
Confidence 37777776422111 1233789999999999999999985 2333444556788999999999999654
Q ss_pred Ee
Q 009162 154 LA 155 (541)
Q Consensus 154 ms 155 (541)
+.
T Consensus 120 vG 121 (237)
T TIGR03849 120 VG 121 (237)
T ss_pred cc
Confidence 43
No 129
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=44.26 E-value=2.3e+02 Score=29.61 Aligned_cols=132 Identities=12% Similarity=0.139 Sum_probs=83.9
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEE---eEEeeec-c-------------------------cCCCcccccchHHHHHHH
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVV---EVWWGVV-E-------------------------RDRPGVYDWRGYFDLIVL 142 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~v---dVWWGiV-E-------------------------~~~p~~YdWs~Y~~l~~m 142 (541)
..-..+.|++.|..|...+.+.+++ |=| .+- + ....+.|.=+-++++++.
T Consensus 12 ~~~~~~~ik~~id~ma~~K~N~lhlHltD~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 12 KYYSMDFLKDIIKTMSWYKMNDLQLHLNDNL-IFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeecCCc-ccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 4557789999999999999998885 323 221 1 113567888889999999
Q ss_pred HHhCCCcEEEEEee-------------ecCCCC----CCCCCcCCCCh---hhHhhhhcCCCceeeCCCCCccccceecc
Q 009162 143 ASNCGLKVRALLAF-------------HQCGSG----PGDPKWVPLPQ---WVLEEIDKDPDLAYSDRFGRRNMEYISLG 202 (541)
Q Consensus 143 v~~~GLKv~~vmsF-------------HqCGGN----VGD~~~IpLP~---WV~~~g~~~pdi~ytD~~G~rn~E~LSlg 202 (541)
|++.|+.|+|-+-. ..|.+. .-++-++.-|. .+.+..+.--++| .+ -.+|+-+|
T Consensus 91 A~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~f-~~-----~~~~~HiG 164 (326)
T cd06564 91 AKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDGF-NP-----KSDTVHIG 164 (326)
T ss_pred HHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHhc-CC-----CCCEEEec
Confidence 99999999765421 122211 11122333332 2222222222222 11 25799999
Q ss_pred cCcccccCCCCchHHHHHHHHHHHHHHhhh
Q 009162 203 CDILPVLRGRSPIQAYTDFMRNFRDTFRPL 232 (541)
Q Consensus 203 ~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~ 232 (541)
.||.+.. .+..+.|.+|++...+.+.+.
T Consensus 165 gDE~~~~--~~~~~~~~~f~~~~~~~v~~~ 192 (326)
T cd06564 165 ADEYAGD--AGYAEAFRAYVNDLAKYVKDK 192 (326)
T ss_pred ccccccc--CccHHHHHHHHHHHHHHHHHc
Confidence 9999865 456788889888888888776
No 130
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.05 E-value=50 Score=32.38 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=48.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD 165 (541)
.+...+..+++.+.++|+++|.+-+.++..+ ..+......++.++++++|+++ |+-.|.=|-.+|+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~ 138 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKN 138 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccC
Confidence 4556677788999999999999888877432 3566778888999999999998 4444443433443
No 131
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=43.60 E-value=2.3e+02 Score=29.70 Aligned_cols=86 Identities=17% Similarity=0.182 Sum_probs=55.9
Q ss_pred eecCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
..++.+.+.+-++.+++.| +|+|.+|.=|.. +-+.|+|. .-+++++-.++.|+|+.+++.=|
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~------- 87 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPG------- 87 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCc-------
Confidence 3457788889999998876 588888865531 22334444 35799999999999995544322
Q ss_pred CCCcCCC-C-hhhHhhhhcCCCceeeCCCCC
Q 009162 165 DPKWVPL-P-QWVLEEIDKDPDLAYSDRFGR 193 (541)
Q Consensus 165 D~~~IpL-P-~WV~~~g~~~pdi~ytD~~G~ 193 (541)
|.. | .-+-+++.+ .+.|.++.+|.
T Consensus 88 ----v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 88 ----VKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred ----eeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 211 1 123344443 48899998885
No 132
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=43.50 E-value=78 Score=38.25 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc-------------ccchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
+-+.+.+.|..|+++||+.|-+.=-+-.... +...| ..+.++++++.++++||||..=+-+--++
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4577999999999999999977543321110 12222 35789999999999999997766666555
No 133
>PRK04326 methionine synthase; Provisional
Probab=43.20 E-value=40 Score=34.88 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhh
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV 175 (541)
+++...+++|+++|++.|.+|.= |.. .|. ++..+.+..+.+-+ +++.. ...|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHH-
Confidence 46677888999999999999973 554 132 33444454444443 44443 35699988752 212
Q ss_pred HhhhhcCCCceeeCCC
Q 009162 176 LEEIDKDPDLAYSDRF 191 (541)
Q Consensus 176 ~~~g~~~pdi~ytD~~ 191 (541)
-...+..-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1122355676666654
No 134
>PRK08508 biotin synthase; Provisional
Probab=42.99 E-value=27 Score=35.72 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCc-------ccccchHHHHHHHHHhCCCcE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG-------VYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKv 150 (541)
+.+|++||++|++.+.++ +|.. +. --+|.-..+.++.+++.|+++
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt~-~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v 153 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LETS-KEFFPKICTTHTWEERFQTCENAKEAGLGL 153 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccch-HHHhcCCCCCCCHHHHHHHHHHHHHcCCee
Confidence 778999999999999985 4542 21 246777777888999999987
No 135
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.36 E-value=81 Score=31.72 Aligned_cols=95 Identities=16% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeE--EeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEV--WWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdV--WWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..+||+|..-- .+-+...+..+..+++|+|+|++-- +|..-+ +--.++|+++++ +.++.+
T Consensus 65 ~~~~vi~gv~~---------~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~-----~~~~~~~~~ia~---~~~~pi- 126 (281)
T cd00408 65 GRVPVIAGVGA---------NSTREAIELARHAEEAGADGVLVVPPYYNKPSQ-----EGIVAHFKAVAD---ASDLPV- 126 (281)
T ss_pred CCCeEEEecCC---------ccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH-----HHHHHHHHHHHh---cCCCCE-
Confidence 46888877644 2334566677788999999999832 333111 112233444433 356655
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCC-ceeeCCCCC
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGR 193 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pd-i~ytD~~G~ 193 (541)
++- | ..+ ...++|+.-+.....+.|. +-++|.+|.
T Consensus 127 -~iY-n-~P~----~tg~~l~~~~~~~L~~~~~v~giK~s~~d 162 (281)
T cd00408 127 -ILY-N-IPG----RTGVDLSPETIARLAEHPNIVGIKDSSGD 162 (281)
T ss_pred -EEE-E-Ccc----ccCCCCCHHHHHHHhcCCCEEEEEeCCCC
Confidence 332 2 221 2235677777776666777 456666654
No 136
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=42.19 E-value=19 Score=37.52 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHHHHHHcCcceEEE---eEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 100 AQSFKALAAAGVEGVVV---EVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~v---dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
+..|++||++|++.+.- ++- .-+-+.-.|++..+..|.+.++.++++|+++.+
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 78999999999986631 000 111122236677899999999999999999743
No 137
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=42.13 E-value=61 Score=34.79 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
....-+.+.++.+|.|+|.+-|+|+-=+...-++-......++.+-|++.||-+..
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 34445577899999999999999993221101566788899999999999999844
No 138
>PRK14706 glycogen branching enzyme; Provisional
Probab=42.07 E-value=57 Score=37.77 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=42.9
Q ss_pred CeecCHHHHHHHH-HHHHHcCcceEEEeEEeeecccCCCcccccch-----------------HHHHHHHHHhCCCcEEE
Q 009162 91 GKVKRRKAMAQSF-KALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRA 152 (541)
Q Consensus 91 ~~~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~ 152 (541)
+++-.-+.+...| ..||++||+.|++=- +.|- |...+|-+ ++++++.++++||+|..
T Consensus 161 g~~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~Vil 235 (639)
T PRK14706 161 GWFLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVIL 235 (639)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344566777777 689999999988642 4452 44445644 78999999999999944
Q ss_pred EEee
Q 009162 153 LLAF 156 (541)
Q Consensus 153 vmsF 156 (541)
=+-+
T Consensus 236 D~v~ 239 (639)
T PRK14706 236 DWVP 239 (639)
T ss_pred Eecc
Confidence 3343
No 139
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=41.94 E-value=1e+02 Score=31.13 Aligned_cols=95 Identities=13% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEe--EEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVE--VWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..+||.+..-- ++.+...+..+..+++|+|+|++- .|+..-+ ++ -..+|+++++ ..+|.|
T Consensus 68 ~~~~vi~gv~~---------~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~---~~--l~~~~~~ia~---~~~~pi- 129 (284)
T cd00950 68 GRVPVIAGTGS---------NNTAEAIELTKRAEKAGADAALVVTPYYNKPSQ---EG--LYAHFKAIAE---ATDLPV- 129 (284)
T ss_pred CCCcEEeccCC---------ccHHHHHHHHHHHHHcCCCEEEEcccccCCCCH---HH--HHHHHHHHHh---cCCCCE-
Confidence 35676655432 334555677788899999999984 3333222 11 3345665555 356655
Q ss_pred EEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCc-eeeCCCCC
Q 009162 152 ALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDL-AYSDRFGR 193 (541)
Q Consensus 152 ~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi-~ytD~~G~ 193 (541)
+ =+| ..+. ....|+.-+.+...+.|.+ -++|.+|.
T Consensus 130 -~-lYn-~P~~----~g~~ls~~~~~~L~~~p~v~giK~s~~~ 165 (284)
T cd00950 130 -I-LYN-VPGR----TGVNIEPETVLRLAEHPNIVGIKEATGD 165 (284)
T ss_pred -E-EEE-ChhH----hCCCCCHHHHHHHhcCCCEEEEEECCCC
Confidence 3 223 2211 1244555555544456775 67776664
No 140
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=41.76 E-value=83 Score=35.68 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=56.5
Q ss_pred ccchHH---HHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCCCC-cc----ccceeccc
Q 009162 132 DWRGYF---DLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRFGR-RN----MEYISLGC 203 (541)
Q Consensus 132 dWs~Y~---~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~-rn----~E~LSlg~ 203 (541)
.|+-|+ +|.++++++|+++.+ ||.+||.||- ...|+ ..+..+.+..|..+-....|. |. +++.+ ++
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~R-GGgpp-~~~~ail~q~~g~~r~TeQga~rY~~~~e~~~~-av 289 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFR-GHLSP-ENLENVLEEYPGVYTFTVQSAFRYDYPYEEVKK-AI 289 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCC-CCCCh-HHHHHHHhCCCCCeEEEeccccccCCCHHHHHH-HH
Confidence 566665 567788999999855 7999999984 34442 233333445566544444442 11 11111 00
Q ss_pred C---cccccCCCCchHHHHHHHHHHHHHHhhhhcCce
Q 009162 204 D---ILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAII 237 (541)
Q Consensus 204 D---~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I 237 (541)
- +-.......|.+.+++.|..+.+...+.|-++|
T Consensus 290 ~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~~V 326 (494)
T PRK13655 290 EEINEKLIAPPRILSEEDKEELLEIIEKYSERYQSQI 326 (494)
T ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000001123567788888888888887776444
No 141
>PRK09936 hypothetical protein; Provisional
Probab=41.71 E-value=53 Score=34.91 Aligned_cols=52 Identities=23% Similarity=0.371 Sum_probs=40.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEE--eeecccCCCcccccc----hHHHHHHHHHhCCCcEEEEE
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVW--WGVVERDRPGVYDWR----GYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdWs----~Y~~l~~mv~~~GLKv~~vm 154 (541)
-.+++|+.-++++|..|++-+.|- | ||-- ||. +..++++.+++.||||++=|
T Consensus 35 ~~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEE-eeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 357899999999999999999875 3 3221 343 57789999999999994433
No 142
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=41.64 E-value=3.2e+02 Score=28.37 Aligned_cols=131 Identities=17% Similarity=0.278 Sum_probs=81.7
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEE----eee--------ccc-------CCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVW----WGV--------VER-------DRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVW----WGi--------VE~-------~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
.+-..+.+++.+..|...+.+.+.+-.= |-+ .|. ...+.|.=+-.+++++.|++.|+.|+|
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 5677889999999999999888765433 422 121 124578889999999999999999977
Q ss_pred EEee--ec-----------CC-------CCCCCCCcCCCCh---hhHhhhhcCCCceeeCCCCCccccceecccCccccc
Q 009162 153 LLAF--HQ-----------CG-------SGPGDPKWVPLPQ---WVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVL 209 (541)
Q Consensus 153 vmsF--Hq-----------CG-------GNVGD~~~IpLP~---WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~ 209 (541)
-+-. |. |. +..-+.-++.-|. .+.+..+.--++| ..+|+-+|.||.+..
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------~~~~iHiGgDE~~~~ 162 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------PDRYLHIGGDEAHFK 162 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC--------CCCeEEecceecCCC
Confidence 6531 10 00 0001122222221 2222111111222 357999999999754
Q ss_pred CCCCchHHHHHHHHHHHHHHhhh
Q 009162 210 RGRSPIQAYTDFMRNFRDTFRPL 232 (541)
Q Consensus 210 ~GRTpiq~Y~dfm~sF~~~f~~~ 232 (541)
.++.+.|..|++...+..++.
T Consensus 163 --~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 163 --QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred --CCHHHHHHHHHHHHHHHHHHc
Confidence 456788888888877777665
No 143
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=41.54 E-value=37 Score=40.02 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchH----HHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGY----FDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPL 171 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y----~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpL 171 (541)
.+++..+++|.++|+..|-||.= | .|.-....-+|..| -+.+..+-+ |++--..+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 46778889999999999999986 6 34332344567444 556666655 6654446799999999765 1 2
Q ss_pred ChhhHhhhhcCCCceeeC
Q 009162 172 PQWVLEEIDKDPDLAYSD 189 (541)
Q Consensus 172 P~WV~~~g~~~pdi~ytD 189 (541)
|. +.+-+-|.++.+
T Consensus 654 ~~----i~~l~vD~~~lE 667 (758)
T PRK05222 654 DA----IAALDADVISIE 667 (758)
T ss_pred HH----HHhCCCCEEEEE
Confidence 22 234577877766
No 144
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=40.59 E-value=39 Score=34.30 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=34.1
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEee
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 156 (541)
-.+.++++++|+.||++|++.|.+- ...+ -.++.++|.+.||-|..=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 3567899999999999999999981 1122 257889999999999665654
No 145
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=40.55 E-value=49 Score=34.92 Aligned_cols=54 Identities=22% Similarity=0.174 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEE--eeecccCCCcccccchHHHHHHHHHhCCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVW--WGVVERDRPGVYDWRGYFDLIVLASNCGL 148 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~~p~~YdWs~Y~~l~~mv~~~GL 148 (541)
+++-+.---++.+++|.||+|+.|. =...=.+++||.+...++++.+-++..+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 3344444445668999999999998 33334467999999999999998887654
No 146
>PRK05402 glycogen branching enzyme; Provisional
Probab=40.38 E-value=66 Score=37.55 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=42.4
Q ss_pred CeecCHHHHHHHH-HHHHHcCcceEEEeEEeeecccCCCcccccc-----------------hHHHHHHHHHhCCCcEEE
Q 009162 91 GKVKRRKAMAQSF-KALAAAGVEGVVVEVWWGVVERDRPGVYDWR-----------------GYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 91 ~~~~~~~~~~~~L-~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs-----------------~Y~~l~~mv~~~GLKv~~ 152 (541)
+..-+-+.+...| ..||++||+.|.+-=- .|. |...+|- .+++|++.|++.||+|..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3445667888885 9999999999977431 221 2212232 378999999999999954
Q ss_pred EEee-ec
Q 009162 153 LLAF-HQ 158 (541)
Q Consensus 153 vmsF-Hq 158 (541)
=+-| |-
T Consensus 334 D~V~NH~ 340 (726)
T PRK05402 334 DWVPAHF 340 (726)
T ss_pred EECCCCC
Confidence 4444 53
No 147
>PRK15108 biotin synthase; Provisional
Probab=40.13 E-value=3.5e+02 Score=28.77 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
-+++.+.+..+.+++.|+.-|.+..=| + .|-.-++++|.++++.+++.|+++ ++|
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g---~--~p~~~~~e~i~~~i~~ik~~~i~v--~~s 130 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAW---K--NPHERDMPYLEQMVQGVKAMGLET--CMT 130 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecC---C--CCCcchHHHHHHHHHHHHhCCCEE--EEe
Confidence 345778888888999999998664333 1 354567899999999999998865 444
No 148
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=39.59 E-value=1.3e+02 Score=30.72 Aligned_cols=96 Identities=15% Similarity=0.272 Sum_probs=50.8
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEE-eEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVV-EVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
..+||++..-- .+.+..-+..+.++++|+|+|++ .=.|..... .+ =.++|+++++ ..+|.|
T Consensus 69 ~~~~vi~gv~~---------~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~--~~--i~~~~~~ia~---~~~~pv-- 130 (292)
T PRK03170 69 GRVPVIAGTGS---------NSTAEAIELTKFAEKAGADGALVVTPYYNKPTQ--EG--LYQHFKAIAE---ATDLPI-- 130 (292)
T ss_pred CCCcEEeecCC---------chHHHHHHHHHHHHHcCCCEEEECCCcCCCCCH--HH--HHHHHHHHHh---cCCCCE--
Confidence 45787765432 23456667778889999999998 222221111 11 2244555443 456655
Q ss_pred EEeeecCCCCCCCCCcCCCChhhHhhhhcCCCc-eeeCCCCC
Q 009162 153 LLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDL-AYSDRFGR 193 (541)
Q Consensus 153 vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi-~ytD~~G~ 193 (541)
++- | +.++-| +.||.=+.+.-.++|.| .++|.+|.
T Consensus 131 ~lY-n-~P~~~g----~~l~~~~~~~L~~~p~v~giK~s~~d 166 (292)
T PRK03170 131 ILY-N-VPGRTG----VDILPETVARLAEHPNIVGIKEATGD 166 (292)
T ss_pred EEE-E-CccccC----CCCCHHHHHHHHcCCCEEEEEECCCC
Confidence 332 3 332222 33444344433567885 56666553
No 149
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=39.54 E-value=39 Score=40.74 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCcceEEE-eEE-eeec
Q 009162 99 MAQSFKALAAAGVEGVVV-EVW-WGVV 123 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~v-dVW-WGiV 123 (541)
.-.-|+.||++||.-|++ +|+ ++-|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 445789999999999985 666 6654
No 150
>PRK07094 biotin synthase; Provisional
Probab=39.50 E-value=35 Score=35.08 Aligned_cols=52 Identities=13% Similarity=0.166 Sum_probs=38.2
Q ss_pred HHHHHHHHHcCcceEEEeEE---eeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 100 AQSFKALAAAGVEGVVVEVW---WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVW---WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...++.+.+.++.++++|+++..
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecc
Confidence 56788999999999987541 112222223 57889999999999999998643
No 151
>PLN02960 alpha-amylase
Probab=39.20 E-value=79 Score=38.27 Aligned_cols=58 Identities=22% Similarity=0.261 Sum_probs=41.8
Q ss_pred eecCHHHHH-HHHHHHHHcCcceEEEeEEeeecccCCCcccccch-----------------HHHHHHHHHhCCCcEEEE
Q 009162 92 KVKRRKAMA-QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 92 ~~~~~~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~v 153 (541)
.+-.-+++. ..|..||++||+.|.+- .+.|- |+..+|-+ ++++++.+++.||+| |
T Consensus 411 ~~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--I 483 (897)
T PLN02960 411 KISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--F 483 (897)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--E
Confidence 344566675 45999999999999874 34442 34444544 899999999999999 5
Q ss_pred Eee
Q 009162 154 LAF 156 (541)
Q Consensus 154 msF 156 (541)
|-+
T Consensus 484 LDv 486 (897)
T PLN02960 484 LDI 486 (897)
T ss_pred EEe
Confidence 543
No 152
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=38.88 E-value=31 Score=35.59 Aligned_cols=53 Identities=17% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCcceEE-Ee--EE-eeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 99 MAQSFKALAAAGVEGVV-VE--VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~-vd--VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
.+..|++||++|++.+. +. .. -.+...-.|++..|..+.+.++.+++.|+++-
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~ 162 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTT 162 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCce
Confidence 36889999999999774 11 11 11111223778899999999999999999983
No 153
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.74 E-value=3.6e+02 Score=28.72 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=45.9
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeE----Eeee--------ccc-------------------CCCcccccchHHHHH
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGV--------VER-------------------DRPGVYDWRGYFDLI 140 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdV----WWGi--------VE~-------------------~~p~~YdWs~Y~~l~ 140 (541)
.+-..+.|++.+..|...+++...+-. -|-+ .|. ...+.|-=+-+++++
T Consensus 13 ~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv 92 (357)
T cd06563 13 HFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYTQEEIREIV 92 (357)
T ss_pred cCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceECHHHHHHHH
Confidence 455678899999999988888776532 2321 111 013668888999999
Q ss_pred HHHHhCCCcEEEEE
Q 009162 141 VLASNCGLKVRALL 154 (541)
Q Consensus 141 ~mv~~~GLKv~~vm 154 (541)
+.|++.|+.|+|-+
T Consensus 93 ~yA~~rgI~VIPEI 106 (357)
T cd06563 93 AYAAERGITVIPEI 106 (357)
T ss_pred HHHHHcCCEEEEec
Confidence 99999999998754
No 154
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=38.63 E-value=3.7e+02 Score=25.87 Aligned_cols=143 Identities=15% Similarity=0.244 Sum_probs=79.9
Q ss_pred cceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCC-CCC------CcCCCChhhHhhhhcC
Q 009162 111 VEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGP-GDP------KWVPLPQWVLEEIDKD 182 (541)
Q Consensus 111 VdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNV-GD~------~~IpLP~WV~~~g~~~ 182 (541)
++|.=++.| |.+ + ++++=+.-++.++..++.|++-.++.. =+-++.+ +.+ |..|-+.||...-+.
T Consensus 1 itGtF~q~~~~d~-~----~~~~~~~W~~~~~~m~~~GidtlIlq~-~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~- 73 (166)
T PF14488_consen 1 ITGTFLQPWSWDI-H----QNWTPAQWREEFRAMKAIGIDTLILQW-TGYGGFAFYPSKLSPGGFYMPPVDLLEMILDA- 73 (166)
T ss_pred CceEEEccccchh-h----cCCCHHHHHHHHHHHHHcCCcEEEEEE-eecCCcccCCccccCccccCCcccHHHHHHHH-
Confidence 356666666 655 3 333445568999999999999977664 2222221 211 223444566554332
Q ss_pred CCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhcCceeEEEecccCCCcCCCCCCCCCCCCC
Q 009162 183 PDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLGAIITGVQVGMGPAGELRYPSLPSQKLMW 262 (541)
Q Consensus 183 pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g~~I~eI~VGlGP~GELRYPSyp~~~g~W 262 (541)
.|+.|-+- ++.|+.|.- .+. .+-.+.-.++-+...++....++ .||+-. ||
T Consensus 74 -----A~~~Gmkv--~~Gl~~~~~-~w~-~~~~~~~~~~~~~v~~el~~~yg-------------------~h~sf~-GW 124 (166)
T PF14488_consen 74 -----ADKYGMKV--FVGLYFDPD-YWD-QGDLDWEAERNKQVADELWQRYG-------------------HHPSFY-GW 124 (166)
T ss_pred -----HHHcCCEE--EEeCCCCch-hhh-ccCHHHHHHHHHHHHHHHHHHHc-------------------CCCCCc-eE
Confidence 45555443 677776654 333 23334444555566777766665 777655 69
Q ss_pred cccCCCCcccccccHHHHHHHHHHHHHh
Q 009162 263 SWRSRELGEFQCYDKYMLASLNACAREI 290 (541)
Q Consensus 263 ~~~~pgiGeFQCYDky~~~~l~~~a~~~ 290 (541)
.+ +-++.--.=-+.-..+.|.+++++.
T Consensus 125 Yi-p~E~~~~~~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 125 YI-PYEIDDYNWNAPERFALLGKYLKQI 151 (166)
T ss_pred EE-ecccCCcccchHHHHHHHHHHHHHh
Confidence 98 2445432222345556666666654
No 155
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=38.55 E-value=22 Score=36.76 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHH----HHHHhCCCcEEEEEeeecCC
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLI----VLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKv~~vmsFHqCG 160 (541)
..+|.+|+..||+.|-.--.|= ++...++.|- ..+++|. .-+.++|||+.+-+..|--+
T Consensus 14 ~eDlekMa~sGI~~Vit~AhdP-~~~~~~~v~~-~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~ 76 (254)
T COG1099 14 FEDLEKMALSGIREVITLAHDP-YPMKTAEVYL-DHFRRLLGVEPERAEKAGLKLKVAVGVHPRA 76 (254)
T ss_pred HHHHHHHHHhChhhhhhcccCC-CCcccHHHHH-HHHHHHHccchhhHHhhCceeeEEeccCCCC
Confidence 3589999999999999988887 6666566542 2223333 34789999999999999433
No 156
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=38.47 E-value=63 Score=33.41 Aligned_cols=86 Identities=17% Similarity=0.108 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccCCCcc------cccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGV------YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVP 170 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~Ip 170 (541)
+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.++.+- .+..+ .++.|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH---
Confidence 57788889999999999999976 2222221111 12332222222221 24444 669999999853211
Q ss_pred CChhhHhhhhcCCCceeeCCCCCc
Q 009162 171 LPQWVLEEIDKDPDLAYSDRFGRR 194 (541)
Q Consensus 171 LP~WV~~~g~~~pdi~ytD~~G~r 194 (541)
-...+.+-|.++-+-+..+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2233567787776666555
No 157
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.97 E-value=1.4e+02 Score=29.98 Aligned_cols=99 Identities=18% Similarity=0.269 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcc------cccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCCh
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGV------YDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQ 173 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~ 173 (541)
..+++..++.|++.|.+-+-.. |.....+ .-+....++++.+++.|++++ +++ -|....+ |.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~-------~~~~~~~-~~ 139 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA-------EDASRAD-PD 139 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee-------ccCCCCC-HH
Confidence 4456778899999988877322 1111112 235678899999999999874 331 2333344 66
Q ss_pred hhHhhhh----cCC-CceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHH
Q 009162 174 WVLEEID----KDP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (541)
Q Consensus 174 WV~~~g~----~~p-di~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f 229 (541)
.+.+..+ .-+ .|.+.|-.|.- +|-+ ..++.+.+++++
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~~------------------~P~~-v~~lv~~l~~~~ 181 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGIL------------------DPFT-TYELIRRLRAAT 181 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCCC------------------CHHH-HHHHHHHHHHhc
Confidence 6665432 112 35666655543 4744 445666666554
No 158
>PLN02540 methylenetetrahydrofolate reductase
Probab=37.66 E-value=73 Score=36.63 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHHHHH---HcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCC-----CCCCCc
Q 009162 97 KAMAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG-----PGDPKW 168 (541)
Q Consensus 97 ~~~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGN-----VGD~~~ 168 (541)
..++.+|..|| ++|++.+..- --||-+.|.+.++.||+.|+++-++...--+..= .-.-|.
T Consensus 153 ~~~~~dl~~Lk~KvdAGAdFiITQ-----------lfFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~G 221 (565)
T PLN02540 153 EAYQKDLAYLKEKVDAGADLIITQ-----------LFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCK 221 (565)
T ss_pred CChHHHHHHHHHHHHcCCCEEeec-----------cccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccC
Confidence 34666777776 4999998754 3489999999999999999665444332211100 000245
Q ss_pred CCCChhhHhhhhc
Q 009162 169 VPLPQWVLEEIDK 181 (541)
Q Consensus 169 IpLP~WV~~~g~~ 181 (541)
|.+|.|+.+..++
T Consensus 222 i~IP~~i~~rLe~ 234 (565)
T PLN02540 222 TKIPAEITAALEP 234 (565)
T ss_pred CcCCHHHHHHHHh
Confidence 9999999997653
No 159
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=37.59 E-value=67 Score=32.81 Aligned_cols=63 Identities=25% Similarity=0.261 Sum_probs=45.7
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
..+|+..|+=.+.| -.-.+++-++.++++||+||-+.. | | .+.-.++++.++++||+...+
T Consensus 86 ~~~plv~m~Y~Npi-------~~~G~e~f~~~~~~aGvdgviipD-----l---p----~ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 86 PNIPIGLLTYYNLI-------FRKGVEEFYAKCKEVGVDGVLVAD-----L---P----LEESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred CCCCEEEEEeccHH-------hhhhHHHHHHHHHHcCCCEEEECC-----C---C----hHHHHHHHHHHHHCCCcEEEE
Confidence 35676666655322 134678889999999999999873 2 2 144678999999999999766
Q ss_pred Ee
Q 009162 154 LA 155 (541)
Q Consensus 154 ms 155 (541)
++
T Consensus 147 v~ 148 (256)
T TIGR00262 147 VA 148 (256)
T ss_pred EC
Confidence 66
No 160
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=37.30 E-value=4.1e+02 Score=28.18 Aligned_cols=129 Identities=19% Similarity=0.274 Sum_probs=78.2
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeE----Eeee--------ccc--------CCCcccccchHHHHHHHHHhCCCcEE
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGV--------VER--------DRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdV----WWGi--------VE~--------~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
.+-..+.|++.+..|...+.+..++-. -|-+ .+. ...+.|.=+-+++|++.|++.|+.|+
T Consensus 13 ~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 13 HFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 466788999999999998888776543 2322 111 11346777889999999999999997
Q ss_pred EEEee-------------ecCCCC---------CC-CCCcCCCCh---hhHhhhhcCCCceeeCCCCCccccceecccCc
Q 009162 152 ALLAF-------------HQCGSG---------PG-DPKWVPLPQ---WVLEEIDKDPDLAYSDRFGRRNMEYISLGCDI 205 (541)
Q Consensus 152 ~vmsF-------------HqCGGN---------VG-D~~~IpLP~---WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~ 205 (541)
|-+-+ ..|.+. ++ ++-++..|. .|.+..+.--++| ..+||-+|.||
T Consensus 93 PEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f--------~~~~iHiGgDE 164 (329)
T cd06568 93 PEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALT--------PGPYIHIGGDE 164 (329)
T ss_pred EecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhC--------CCCeEEEeccc
Confidence 75432 112210 00 122233331 2222211111222 24799999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHhhh
Q 009162 206 LPVLRGRSPIQAYTDFMRNFRDTFRPL 232 (541)
Q Consensus 206 ~pv~~GRTpiq~Y~dfm~sF~~~f~~~ 232 (541)
.+. +..+.|..|++...+.+.+.
T Consensus 165 ~~~----~~~~~~~~f~~~~~~~v~~~ 187 (329)
T cd06568 165 AHS----TPHDDYAYFVNRVRAIVAKY 187 (329)
T ss_pred CCC----CchHHHHHHHHHHHHHHHHC
Confidence 974 34577888887777766654
No 161
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.29 E-value=2.5e+02 Score=28.74 Aligned_cols=156 Identities=13% Similarity=0.158 Sum_probs=88.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHH-hCCCcEEEEEeeecCCCCCCCCCcCCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLAS-NCGLKVRALLAFHQCGSGPGDPKWVPLP 172 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~-~~GLKv~~vmsFHqCGGNVGD~~~IpLP 172 (541)
+..+.+-+.++.||.+|+|.|.|- .+|+.-....=.+++..++ +.|+.+.+=++ |. |.-.+-|-
T Consensus 12 ~~~~~l~~~~~~l~~~~pd~isvT--------~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt---~r----~~n~~~l~ 76 (272)
T TIGR00676 12 EGEENLWETVDRLSPLDPDFVSVT--------YGAGGSTRDRTVRIVRRIKKETGIPTVPHLT---CI----GATREEIR 76 (272)
T ss_pred hhHHHHHHHHHHHhcCCCCEEEec--------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEee---ec----CCCHHHHH
Confidence 445778888999999999999984 4566556666677888888 56999866555 22 23445678
Q ss_pred hhhHhhhhcCCCceeeCCCCCccccceecccCcccccCCCCchHHHH---HHHHHHHHHHhhhhcCceeEEEecccCCCc
Q 009162 173 QWVLEEIDKDPDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYT---DFMRNFRDTFRPLLGAIITGVQVGMGPAGE 249 (541)
Q Consensus 173 ~WV~~~g~~~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~---dfm~sF~~~f~~~~g~~I~eI~VGlGP~GE 249 (541)
.|+... ...|-+| .|-|.-|..+... .++-..|. |+++..++... ++.||..
T Consensus 77 ~~L~~~----------~~~Gi~n--vL~l~GD~~~~~~-~~~~~~f~~a~~Li~~i~~~~~--------~f~ig~a---- 131 (272)
T TIGR00676 77 EILREY----------RELGIRH--ILALRGDPPKGEG-TPTPGGFNYASELVEFIRNEFG--------DFDIGVA---- 131 (272)
T ss_pred HHHHHH----------HHCCCCE--EEEeCCCCCCCCC-CCCCCCCCCHHHHHHHHHHhcC--------CeeEEEE----
Confidence 888774 2234333 3444444432211 12222333 23344443322 2333332
Q ss_pred CCCCC-CCCCCC--------CCcccCCCCccc---ccccHHHHHHHHHHHHHhc
Q 009162 250 LRYPS-LPSQKL--------MWSWRSRELGEF---QCYDKYMLASLNACAREIG 291 (541)
Q Consensus 250 LRYPS-yp~~~g--------~W~~~~pgiGeF---QCYDky~~~~l~~~a~~~g 291 (541)
=||- +|+... .++.+ -|.--| -|||......|.+.+++.|
T Consensus 132 -~~Peghp~~~~~~~~~~~L~~K~~-aGA~f~iTQ~~fd~~~~~~~~~~~~~~g 183 (272)
T TIGR00676 132 -AYPEKHPEAPNLEEDIENLKRKVD-AGADYAITQLFFDNDDYYRFVDRCRAAG 183 (272)
T ss_pred -eCCCCCCCCCCHHHHHHHHHHHHH-cCCCeEeeccccCHHHHHHHHHHHHHcC
Confidence 1333 232210 12222 355434 3899999999999888765
No 162
>PRK03906 mannonate dehydratase; Provisional
Probab=37.10 E-value=50 Score=36.01 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
.|..+|++||+||.... -.-.....++-....++-++|+++||+|-||=|
T Consensus 15 ~l~~~rQ~G~~~iv~~l----~~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs 64 (385)
T PRK03906 15 TLEDIRQPGATGIVTAL----HDIPVGEVWPVEEILARKAEIEAAGLEWSVVES 64 (385)
T ss_pred hHHHHhcCCCCceeecC----CCCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 47889999999999763 111112344556678888999999999988877
No 163
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=37.03 E-value=34 Score=36.10 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCcceEE-E--eEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 99 MAQSFKALAAAGVEGVV-V--EVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~-v--dVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
.+..|++||++|++.+. . ... --+...-.|++..|.-+.+.++.++++|+++-.
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~s 206 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNA 206 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcce
Confidence 45669999999998775 1 111 112222336677888899999999999999833
No 164
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=36.94 E-value=1.7e+02 Score=32.94 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=35.9
Q ss_pred eeccCCeec-CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 86 STMIGGKVK-RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 86 ~V~~~~~~~-~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+...+|... +++...+-|+.+-.+|+|-|-|+..+.. -..++++.++..|.|+ |+|+|
T Consensus 85 ~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~------------~~~~~~~~~~~~~~~v--I~S~H 143 (529)
T PLN02520 85 PKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAH------------EFINSISGKKPEKCKV--IVSSH 143 (529)
T ss_pred cHHHCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCch------------hHHHHHHhhhhcCCEE--EEEec
Confidence 334556543 2333333456666678999888765421 2345666677777777 99999
No 165
>PRK08445 hypothetical protein; Provisional
Probab=36.45 E-value=40 Score=35.86 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCcceEE---EeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 100 AQSFKALAAAGVEGVV---VEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~---vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
+..|++||++|++-+. +... --+-+.-.|+.-.-..|.+..+.++++||++-.-|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~ 202 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATM 202 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEE
Confidence 6899999999999543 3322 12223333666667777999999999999995443
No 166
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.43 E-value=1.9e+02 Score=30.15 Aligned_cols=105 Identities=20% Similarity=0.270 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcc------cccchHHHHHHHHHhCCCcEEEEEeee-cCCCCCCCCCcCCCC
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGV------YDWRGYFDLIVLASNCGLKVRALLAFH-QCGSGPGDPKWVPLP 172 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~------YdWs~Y~~l~~mv~~~GLKv~~vmsFH-qCGGNVGD~~~IpLP 172 (541)
..++++..++|++.|.+-+ ..-|...-.+ -.++-..+.++.++++|+++++.+++- .|- -+. .++ |
T Consensus 82 ~~~ie~A~~~g~~~v~i~~--~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~---~~~-~~~-~ 154 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFA--SASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP---YEG-EVP-P 154 (287)
T ss_pred HHHHHHHHHcCCCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC---CCC-CCC-H
Confidence 3455667788999877765 2222111112 245568899999999999999877753 121 111 223 7
Q ss_pred hhhHhhhhc----CC-CceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHh
Q 009162 173 QWVLEEIDK----DP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFR 230 (541)
Q Consensus 173 ~WV~~~g~~----~p-di~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~ 230 (541)
..+.+..+. -. .|.+.|-.|. -+|.+ ..++++.+++++.
T Consensus 155 ~~~~~~~~~~~~~G~d~i~l~DT~G~------------------~~P~~-v~~lv~~l~~~~~ 198 (287)
T PRK05692 155 EAVADVAERLFALGCYEISLGDTIGV------------------GTPGQ-VRAVLEAVLAEFP 198 (287)
T ss_pred HHHHHHHHHHHHcCCcEEEeccccCc------------------cCHHH-HHHHHHHHHHhCC
Confidence 777774331 11 2445554444 34744 5567888887654
No 167
>PRK06256 biotin synthase; Validated
Probab=36.34 E-value=37 Score=35.19 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCc-------ccccchHHHHHHHHHhCCCcEE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG-------VYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~-------~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
+..++.||++|++.|.+. +|. .+. ..+|..+.+.++.++++|+++.
T Consensus 152 ~e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~ 204 (336)
T PRK06256 152 EEQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPC 204 (336)
T ss_pred HHHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeec
Confidence 356788999999999774 353 222 2367888899999999999873
No 168
>PF05226 CHASE2: CHASE2 domain; InterPro: IPR007890 CHASE2 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE2 domains are found in histidine kinases, adenylate cyclases, serine/threonine kinases and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE2 domains are not known at this time [].
Probab=36.21 E-value=3e+02 Score=27.96 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=43.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
-+++.+.+-|++|.++|+..|-+|+.- .|+. .++=...+.+++.++++|=++ +++.+
T Consensus 61 w~R~~~A~ll~~L~~~ga~~I~~Di~f--~~~~---~~~~~~D~~la~al~~~~~~v--vl~~~ 117 (310)
T PF05226_consen 61 WPRSVYARLLDRLAAAGAKAIGFDILF--DEPD---PSNPEGDQALAEALRRAGNRV--VLASV 117 (310)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEeee--cCCC---CCCchHHHHHHHHHHhCCCeE--EEEEe
Confidence 367889999999999999999999964 4442 111127788999999998777 56644
No 169
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=35.94 E-value=1.1e+02 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
.++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.|+++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeEE
Confidence 3667889999999999965 3322 66778899999999999883
No 170
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=35.82 E-value=57 Score=35.87 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=36.4
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
.|..+|++||+||....-- + +. ...++-....++-++|+++||+|-||=|
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p~-gevW~~~~i~~~k~~ie~~GL~~~vvEs 64 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--PN-GEVWEKEEIRKRKEYIESAGLHWSVVES 64 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--CC-CCCCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4788999999999965421 1 11 2234445678888999999999988877
No 171
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=35.15 E-value=50 Score=34.10 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=52.6
Q ss_pred CCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 73 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
.-+|+||-+-.|--+- .-...++.-|+.+|++|++.|+|.. |--...=+-..++++++++.|||+.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3478888877775442 2267899999999999999999863 33333445667899999999999855
Q ss_pred EEeeecCCCCCCCCCcCCCChhhHh
Q 009162 153 LLAFHQCGSGPGDPKWVPLPQWVLE 177 (541)
Q Consensus 153 vmsFHqCGGNVGD~~~IpLP~WV~~ 177 (541)
=..-. +.+.....++..|+..
T Consensus 132 EvG~K----~~~~~~~~~~~~~i~~ 152 (244)
T PF02679_consen 132 EVGKK----DPESDFSLDPEELIEQ 152 (244)
T ss_dssp EES-S----SHHHHTT--CCHHHHH
T ss_pred cccCC----CchhcccCCHHHHHHH
Confidence 44411 1111222335667765
No 172
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=34.77 E-value=1.4e+02 Score=30.53 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=36.6
Q ss_pred HHHHHHHHcCcceEEEeEEeeeccc------CCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVER------DRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~------~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
+++++.+++|++.|.+-+= .=|. ...-...+.-..++++.+++.|+++.+.+.
T Consensus 75 ~di~~a~~~g~~~i~i~~~--~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 75 DDARIAVETGVDGVDLVFG--TSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHcCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3577778899998887551 1110 012234577788899999999999987775
No 173
>PRK02227 hypothetical protein; Provisional
Probab=34.59 E-value=47 Score=34.25 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=36.6
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCC---cccccchHHHHHHHHHhCCCcE
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRP---GVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p---~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
.-+..++++|++|+|+|-+ ++.|- ..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567789999999999965 44443 3456788888999999999998
No 174
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=34.29 E-value=32 Score=34.07 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=16.1
Q ss_pred cccchHHHHHHHHHhCCCcEE
Q 009162 131 YDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 131 YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
|+|+.|+.+++.++++||+|.
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipvi 106 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPVI 106 (213)
T ss_dssp --GGGTHHHHHHHHTSS--EE
T ss_pred CchHHHHHHHHHHHHCCCCEE
Confidence 579999999999999999883
No 175
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.66 E-value=2e+02 Score=29.94 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCccc------ccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCC-
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVY------DWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLP- 172 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP- 172 (541)
.+++++..++|++.|.+-+ +.=|...-.++ -++-+.+++++++++||++++.+ .|....++.
T Consensus 77 ~~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~ 145 (279)
T cd07947 77 KEDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYG 145 (279)
T ss_pred HHHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCccc
Confidence 3556666678999988754 33232222233 34558888899999999997666 233333333
Q ss_pred ---hhhHhhhh----cCCC--ceeeCCCCCcc
Q 009162 173 ---QWVLEEID----KDPD--LAYSDRFGRRN 195 (541)
Q Consensus 173 ---~WV~~~g~----~~pd--i~ytD~~G~rn 195 (541)
.|+.+..+ .-.| |-+.|--|.-+
T Consensus 146 ~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~ 177 (279)
T cd07947 146 FVLPFVNKLMKLSKESGIPVKIRLCDTLGYGV 177 (279)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEeccCCCcCC
Confidence 58777554 3334 44667666544
No 176
>PRK15108 biotin synthase; Provisional
Probab=33.40 E-value=62 Score=34.35 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCccc-------ccchHHHHHHHHHhCCCcE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------DWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------dWs~Y~~l~~mv~~~GLKv 150 (541)
+..|++||++|||.+.++. |. .|+.| +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~l-----eT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNL-----DT-SPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeecc-----cc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 6789999999999988854 22 12222 5666667777788889876
No 177
>PLN02561 triosephosphate isomerase
Probab=33.29 E-value=2.6e+02 Score=28.94 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHH----HHHHHHhCCCcEEEEEe
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFD----LIVLASNCGLKVRALLA 155 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~----l~~mv~~~GLKv~~vms 155 (541)
-+...||++|++.|.+. .++++-.+..=++ -+..+.++||+. |+|
T Consensus 79 vS~~mL~d~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~p--IvC 127 (253)
T PLN02561 79 ISAEMLVNLGIPWVILG--------HSERRALLGESNEFVGDKVAYALSQGLKV--IAC 127 (253)
T ss_pred CCHHHHHHcCCCEEEEC--------cccccCccCCChHHHHHHHHHHHHCcCEE--EEE
Confidence 35678999999999996 4555555655533 344678888886 998
No 178
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=33.26 E-value=71 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG 147 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 147 (541)
|++++++.++.||..||+.|-|--=|+.+-++ .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 68999999999999999999998888887764 2356778888766
No 179
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.18 E-value=3.8e+02 Score=27.99 Aligned_cols=87 Identities=9% Similarity=0.089 Sum_probs=55.2
Q ss_pred ecCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCCC
Q 009162 93 VKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGD 165 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD 165 (541)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|. --+++++-+++.|+|+.+++-=|- ..
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i-----~~ 90 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGI-----RV 90 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccc-----cC
Confidence 467788888899998866 58898986442 1 23445553 478899999999999965553221 10
Q ss_pred CCcCCCChhhHhhhhcCCCceeeCCCCC
Q 009162 166 PKWVPLPQWVLEEIDKDPDLAYSDRFGR 193 (541)
Q Consensus 166 ~~~IpLP~WV~~~g~~~pdi~ytD~~G~ 193 (541)
+. .-|.+ +++. +.+.|.++.+|.
T Consensus 91 ~~--~~~~~--~~~~-~~~~~v~~~~g~ 113 (317)
T cd06600 91 DQ--NYSPF--LSGM-DKGKFCEIESGE 113 (317)
T ss_pred CC--CChHH--HHHH-HCCEEEECCCCC
Confidence 11 12333 2222 347888888875
No 180
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=32.91 E-value=36 Score=40.73 Aligned_cols=67 Identities=25% Similarity=0.499 Sum_probs=46.2
Q ss_pred ecCHHHHHHHHHHH-----HHcC---cceEEEeEEeeecccCCCccc---ccchHH---HHHHHHHhCCCcEEEEEeeec
Q 009162 93 VKRRKAMAQSFKAL-----AAAG---VEGVVVEVWWGVVERDRPGVY---DWRGYF---DLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 93 ~~~~~~~~~~L~~L-----K~~G---VdGV~vdVWWGiVE~~~p~~Y---dWs~Y~---~l~~mv~~~GLKv~~vmsFHq 158 (541)
+++...+-.+|-.| -.+| +.-||+. .=-...++-| +|.-|+ +|+++++++|.+++ =||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEcc
Confidence 55555555555333 2244 7888884 3333445555 798886 58999999999985 4999
Q ss_pred CCCCCCCC
Q 009162 159 CGSGPGDP 166 (541)
Q Consensus 159 CGGNVGD~ 166 (541)
-||.||--
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999963
No 181
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.87 E-value=1.4e+02 Score=30.11 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=15.5
Q ss_pred ccCCCCchHHHHHHHHHHHHHHhhhh
Q 009162 208 VLRGRSPIQAYTDFMRNFRDTFRPLL 233 (541)
Q Consensus 208 v~~GRTpiq~Y~dfm~sF~~~f~~~~ 233 (541)
++.||...-+ .+|+|..|..+.=++
T Consensus 138 ~~~~~k~~~M-e~FYR~mRkr~~ILm 162 (224)
T PF04244_consen 138 WFEGRKRLRM-EYFYREMRKRFGILM 162 (224)
T ss_dssp HHTT-SS--H-HHHHHHHHHHHTTTE
T ss_pred HHccCCceeH-HHHHHHHHHHcCccc
Confidence 4455443222 778888888888777
No 182
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.85 E-value=4.2e+02 Score=25.89 Aligned_cols=98 Identities=16% Similarity=0.253 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccc--------------cchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYD--------------WRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Yd--------------Ws~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
+.+.++..+++++..|++.|.+- +-.. + .+-..++++.+++.|+++..-+-
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~-----~~~s-----~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~----- 129 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIF-----ISVS-----DLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE----- 129 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEE-----EETS-----HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET-----
T ss_pred hHHHHHHHHHhhHhccCCEEEec-----Cccc-----HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc-----
Q ss_pred CCCCCCCcCCCChhhHh----hhhcCCC-ceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhh
Q 009162 161 SGPGDPKWVPLPQWVLE----EIDKDPD-LAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRP 231 (541)
Q Consensus 161 GNVGD~~~IpLP~WV~~----~g~~~pd-i~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~ 231 (541)
+..-.=|..+.+ ..+..+| |.+.|-.|.-. | ..+.++.+.+++++.+
T Consensus 130 -----~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~------------------P-~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 130 -----DASRTDPEELLELAEALAEAGADIIYLADTVGIMT------------------P-EDVAELVRALREALPD 181 (237)
T ss_dssp -----TTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-------------------H-HHHHHHHHHHHHHSTT
T ss_pred -----ccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcC------------------H-HHHHHHHHHHHHhccC
No 183
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=32.65 E-value=71 Score=37.90 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHH----HHHHhCCCcEEEEEeeecCCCCCCCCCcCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLI----VLASNCGLKVRALLAFHQCGSGPGDPKWVPL 171 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpL 171 (541)
.+++..++.|.++|+.-|-||.= |- |.-.-..-+|..|.+.+ +++ ..|++-..-+++|-|-||..+
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~-~~~v~~~~~I~~H~C~gnf~~------ 656 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRIT-NCGVQDTTQIHTHMCYSNFND------ 656 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHH-HhcCCCCCEEEEEEecCCcHH------
Confidence 46778889999999999999986 62 33212346676665544 443 335543335778999999754
Q ss_pred ChhhHh-hhhcCCCceeeCC
Q 009162 172 PQWVLE-EIDKDPDLAYSDR 190 (541)
Q Consensus 172 P~WV~~-~g~~~pdi~ytD~ 190 (541)
|.+ +.+-+-|.++.|-
T Consensus 657 ---I~~~i~~l~~D~~~~E~ 673 (766)
T PLN02475 657 ---IIHSIIDMDADVITIEN 673 (766)
T ss_pred ---HHHHHHhCCCCEEEEEc
Confidence 222 2346677777663
No 184
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=32.23 E-value=4.8e+02 Score=27.66 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=56.3
Q ss_pred eecCHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCccccc-----chH--HHHHHHHHhCCCcEEEEEeeecCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDW-----RGY--FDLIVLASNCGLKVRALLAFHQCGSG 162 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdW-----s~Y--~~l~~mv~~~GLKv~~vmsFHqCGGN 162 (541)
...+.+.+.+-++.+++.| +|+|.+|+=|.. +-+.|+| .-- +++++-+++.|+||.+++-=|-+-.+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 3467788899999998865 688989865531 1234443 345 89999999999999554432211100
Q ss_pred CCCCCcCCCChhhHhhhhcCCCceeeCCCCCcc
Q 009162 163 PGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRRN 195 (541)
Q Consensus 163 VGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn 195 (541)
..-.-|. .+++.+ -+.+.++.+|...
T Consensus 95 ----~~~~~~~--~~e~~~-~g~~v~~~~g~~~ 120 (339)
T cd06602 95 ----PTGSYPP--YDRGLE-MDVFIKNDDGSPY 120 (339)
T ss_pred ----CCCCCHH--HHHHHH-CCeEEECCCCCEE
Confidence 0001122 333333 4788898888643
No 185
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=32.19 E-value=1.1e+02 Score=36.40 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=47.6
Q ss_pred ceEEeeecceeccCCeecCHHHH-HHHHHHHHHcCcceEEEeEEeeecccCCCccccc-----------------chHHH
Q 009162 77 PVFVKLPEDSTMIGGKVKRRKAM-AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-----------------RGYFD 138 (541)
Q Consensus 77 pv~VMlPLd~V~~~~~~~~~~~~-~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~ 138 (541)
-+|-+=.-. .+..+.+..-+++ +..|..||++|++.|.+-- +.|. +....| ..+++
T Consensus 231 ~IYE~Hvg~-~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~ 304 (758)
T PLN02447 231 RIYEAHVGM-SSEEPKVNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKY 304 (758)
T ss_pred EEEEEeCCc-ccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHH
Confidence 345444332 2333445556665 5669999999999998742 2232 111123 34899
Q ss_pred HHHHHHhCCCcEEEEEee-ecC
Q 009162 139 LIVLASNCGLKVRALLAF-HQC 159 (541)
Q Consensus 139 l~~mv~~~GLKv~~vmsF-HqC 159 (541)
|++.++++||+|..=+-+ |.+
T Consensus 305 LVd~aH~~GI~VilDvV~nH~~ 326 (758)
T PLN02447 305 LIDKAHSLGLRVLMDVVHSHAS 326 (758)
T ss_pred HHHHHHHCCCEEEEEecccccc
Confidence 999999999999544444 544
No 186
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=32.11 E-value=76 Score=34.06 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeec-ccC-----CCcccc----cchHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVV-ERD-----RPGVYD----WRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiV-E~~-----~p~~Yd----Ws~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
+++++.+++|.++|+..|-+|.= |+.. ... .....+ =..|.+++..+-+ |+.--..+++|-|-||..
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 46778889999999999999987 7641 110 000011 1223344444433 664444789999998864
No 187
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=31.32 E-value=3.7e+02 Score=27.81 Aligned_cols=102 Identities=11% Similarity=0.101 Sum_probs=61.2
Q ss_pred ccccCCCCCCChHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHH
Q 009162 383 AGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQ 462 (541)
Q Consensus 383 AGyYNt~~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~ 462 (541)
=+|||+--+-|++..++-+++.|++-..- -++ | +| -...+.+.|+++|+..--==+ +.-..+-..
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgvii-pDL-----P-------~e-e~~~~~~~~~~~gi~~I~lv~-PtT~~eri~ 161 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLII-PDL-----P-------YE-ESDYLISVCNLYNIELILLIA-PTSSKSRIQ 161 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEe-cCC-----C-------HH-HHHHHHHHHHHcCCCEEEEEC-CCCCHHHHH
Confidence 48999988889999999999999865433 111 1 23 367888999999986421100 011334456
Q ss_pred HHHHhhcccCCCCCCCcceeeEe--cCCccccCCcChHHHHHHHHHhhCC
Q 009162 463 QVIKMSKFYSEGLEKPSFSFNFL--RMDKNMFEYHNWVRFTRFVRQLSGS 510 (541)
Q Consensus 463 qi~~~~~~~~~~~~~~~~~FTyl--Rm~~~lf~~~n~~~F~~FVr~m~~~ 510 (541)
.|.+.+. +|-|+ |++-.=-..+-=....++++++++.
T Consensus 162 ~i~~~a~-----------gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~ 200 (263)
T CHL00200 162 KIARAAP-----------GCIYLVSTTGVTGLKTELDKKLKKLIETIKKM 200 (263)
T ss_pred HHHHhCC-----------CcEEEEcCCCCCCCCccccHHHHHHHHHHHHh
Confidence 6665542 46665 5543322222234566666666653
No 188
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=31.07 E-value=2.1e+02 Score=28.72 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=47.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCC--cCCC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPK--WVPL 171 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~--~IpL 171 (541)
-+...+.+.|+...+.|++-|.+. ||.-.+. .....-+.++++++.+.+.|.=| |.+ .||-|... .+|.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~~-~~~~~~~~l~~ai~~A~~~Gilv--vaa----AGN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKPE-DNDNDINELENAIKEALDRGILL--FCS----ASDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eeccccc-ccccchHHHHHHHHHHHhCCeEE--EEe----cCCCCCcCCCcccC
Confidence 356788999999999999988877 6753322 11223567788888888887544 545 46766554 4555
Q ss_pred Chh
Q 009162 172 PQW 174 (541)
Q Consensus 172 P~W 174 (541)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 189
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=30.85 E-value=35 Score=35.79 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=27.4
Q ss_pred eeeEecCCccccCCc-ChHHHHHHHHHhhCCc
Q 009162 481 SFNFLRMDKNMFEYH-NWVRFTRFVRQLSGSS 511 (541)
Q Consensus 481 ~FTylRm~~~lf~~~-n~~~F~~FVr~m~~~~ 511 (541)
=||++|||..|+.|. ++..+..|+|.|...-
T Consensus 97 PfTiqRlcEl~~~P~~~y~~~~k~~~alek~~ 128 (288)
T PF09184_consen 97 PFTIQRLCELLLDPRKHYKTLDKFLRALEKVV 128 (288)
T ss_pred ChhHHHHHHHHhChhhccccHHHHHHHHheeE
Confidence 599999999999986 6999999999987653
No 190
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=30.75 E-value=44 Score=28.39 Aligned_cols=50 Identities=16% Similarity=0.251 Sum_probs=36.3
Q ss_pred HHHHHHhhcCcEE------------------EEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecc
Q 009162 396 PIARIFGRYGFTL------------------CCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGE 450 (541)
Q Consensus 396 ~Ia~mf~rh~~~l------------------~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GE 450 (541)
.|++.++.||+.+ --.|||..-...| .+++.|-.++...+++.||.++=|
T Consensus 16 ~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-----~~~~~lr~~L~~la~elgvDIavQ 83 (84)
T cd04871 16 AVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-----ADLEALRAALLELASELNVDIAFQ 83 (84)
T ss_pred HHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-----CCHHHHHHHHHHHhcccCceEEEe
Confidence 5666777766632 1348888766432 589999999999999999988643
No 191
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=30.40 E-value=1.2e+02 Score=29.93 Aligned_cols=52 Identities=8% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
..++..|..+.++|+++|.+ |.+-.....+..++=...+++-++++++||++
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 35788999999999999998 33222211122233345888999999999985
No 192
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=30.37 E-value=58 Score=33.60 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=34.7
Q ss_pred HHHHHHcCcceEEEeEEeeecccCCCc---ccccchHHHHHHHHHhCCCcE
Q 009162 103 FKALAAAGVEGVVVEVWWGVVERDRPG---VYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 103 L~~LK~~GVdGV~vdVWWGiVE~~~p~---~YdWs~Y~~l~~mv~~~GLKv 150 (541)
+..++++|++|||+|-+ .+.|.. .+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 45678999999999975 444433 456677788899999999998
No 193
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=30.35 E-value=1.2e+02 Score=29.97 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeec
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHq 158 (541)
+.+++.+.+++||+ ++|.|-+-.=||.=....|. ..-+++++.+-+.|..+ |++=|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p~----~~~~~~A~~l~~~G~Dv--IiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEPT----DEQRELAHALIDAGADV--VIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCCC----HHHHHHHHHHHHcCCCE--EEcCCC
Confidence 46889999999998 79999999999973322232 22256666666689887 888773
No 194
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=30.27 E-value=83 Score=31.69 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=36.9
Q ss_pred hHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCc
Q 009162 394 FLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSA 453 (541)
Q Consensus 394 Y~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL 453 (541)
...+++.|-+.|+...++|+.-.--... ---..--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~-~LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDES-FLGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GG-GTT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChH-HCCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 4477778888899999999875432211 0112234689999999999999999999975
No 195
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=29.97 E-value=1.3e+02 Score=28.23 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCcceEEeeecceeccCC-eecC---HHHHH-HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhC
Q 009162 74 NGSPVFVKLPEDSTMIGG-KVKR---RKAMA-QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC 146 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~-~~~~---~~~~~-~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~ 146 (541)
++++|.+++--..-.... .+.+ .+++. +-++.+++.|.|||.+|.-|...+.. -++..|.++++.+|+.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 567766666442211110 1222 33444 44456688999999999655433321 2467777777777764
No 196
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=29.93 E-value=45 Score=34.20 Aligned_cols=31 Identities=16% Similarity=0.436 Sum_probs=25.0
Q ss_pred CCeecCHHHHHHHHHHHHHcCcceEEEeEEee
Q 009162 90 GGKVKRRKAMAQSFKALAAAGVEGVVVEVWWG 121 (541)
Q Consensus 90 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWG 121 (541)
++++..+..+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 456777777887777777 9999999999954
No 197
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=29.90 E-value=90 Score=32.06 Aligned_cols=45 Identities=22% Similarity=0.206 Sum_probs=37.3
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHH----HHhCCCcEEEEEe
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVL----ASNCGLKVRALLA 155 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~m----v~~~GLKv~~vms 155 (541)
-+-..||++|++.|.+. .++++=.+.-=++++.. +.++||+. |+|
T Consensus 77 vS~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvC 125 (250)
T PRK00042 77 ISAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILC 125 (250)
T ss_pred cCHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 35678999999999996 56777777777888887 99999998 888
No 198
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=29.78 E-value=93 Score=32.37 Aligned_cols=44 Identities=18% Similarity=0.168 Sum_probs=38.2
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHH----HHHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYF----DLIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~----~l~~mv~~~GLKv~~vms 155 (541)
+-..||++|+++|.|. .++++-.+.-=+ +-++.++++||+. |+|
T Consensus 80 S~~mL~d~G~~~viiG--------HSERR~~~~E~d~~i~~K~~aa~~~Gl~p--IlC 127 (251)
T COG0149 80 SAEMLKDLGAKYVLIG--------HSERRLYFGETDELIAKKVKAAKEAGLTP--ILC 127 (251)
T ss_pred CHHHHHHcCCCEEEEC--------ccccccccccchHHHHHHHHHHHHCCCeE--EEE
Confidence 4567999999999996 678888888888 7788999999997 998
No 199
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=29.77 E-value=6.7e+02 Score=26.21 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=57.6
Q ss_pred ecCHHHHHHHHHHHHHc--CcceEEEeE-EeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 93 VKRRKAMAQSFKALAAA--GVEGVVVEV-WWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~--GVdGV~vdV-WWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
..+.+.+.+-++.+++. -+|.|.+|. ||+ ..+-+.|+|. --+++++-+++.|+||.+++ |-. |.
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i--~P~---v~ 91 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISI--WPT---FG 91 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEe--cCC---cC
Confidence 36788899999999886 679999996 453 2211256555 57899999999999995543 311 11
Q ss_pred CCCcCCCChhhHhhhhcCCCceeeCCCCCcc
Q 009162 165 DPKWVPLPQWVLEEIDKDPDLAYSDRFGRRN 195 (541)
Q Consensus 165 D~~~IpLP~WV~~~g~~~pdi~ytD~~G~rn 195 (541)
..-|. -+++.+ .+.++++..|...
T Consensus 92 ----~~~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 92 ----PETEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred ----CCChh--HHHHHH-CCEEEEcCCCCee
Confidence 11122 334443 4899999887743
No 200
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=29.68 E-value=1.5e+02 Score=29.67 Aligned_cols=52 Identities=8% Similarity=-0.049 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhC-CCcE
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKV 150 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 150 (541)
..|+..|+.+|++|.++|++.+=...-... +. .+=...+++.++++++ |+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS-RP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC-CC-CCHHHHHHHHHHHHHcCCCcE
Confidence 568899999999999999987631100000 00 0115688899999999 7665
No 201
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=29.35 E-value=2.1e+02 Score=29.10 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=60.2
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEe--EEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVE--VWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
..+||++...- .+-+..-...+..+++|+|+|++- .++..-+. + --.+|+ +++...++.+
T Consensus 69 ~~~~vi~gv~~---------~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~---~--l~~y~~---~ia~~~~~pi- 130 (289)
T PF00701_consen 69 GRVPVIAGVGA---------NSTEEAIELARHAQDAGADAVLVIPPYYFKPSQE---E--LIDYFR---AIADATDLPI- 130 (289)
T ss_dssp TSSEEEEEEES---------SSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHH---H--HHHHHH---HHHHHSSSEE-
T ss_pred CceEEEecCcc---------hhHHHHHHHHHHHhhcCceEEEEeccccccchhh---H--HHHHHH---HHHhhcCCCE-
Confidence 46888887554 233555556677889999999863 33321111 1 123343 3445677777
Q ss_pred EEEeee--cCCCCCCCCCcCCCChhhHhhhhcCCCc-eeeCCCCCc--cccceecccCcccccCC
Q 009162 152 ALLAFH--QCGSGPGDPKWVPLPQWVLEEIDKDPDL-AYSDRFGRR--NMEYISLGCDILPVLRG 211 (541)
Q Consensus 152 ~vmsFH--qCGGNVGD~~~IpLP~WV~~~g~~~pdi-~ytD~~G~r--n~E~LSlg~D~~pv~~G 211 (541)
++--+ .+| ..|+.-+.....+.|.| -++|.+|+. ..+.+....+++.++.|
T Consensus 131 -~iYn~P~~tg--------~~ls~~~l~~L~~~~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G 186 (289)
T PF00701_consen 131 -IIYNNPARTG--------NDLSPETLARLAKIPNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG 186 (289)
T ss_dssp -EEEEBHHHHS--------STSHHHHHHHHHTSTTEEEEEESSSBHHHHHHHHHHSSTTSEEEES
T ss_pred -EEEECCCccc--------cCCCHHHHHHHhcCCcEEEEEcCchhHHHHHHHhhhcccCeeeecc
Confidence 55422 223 45677677766668884 567766643 33333333444444444
No 202
>PRK09875 putative hydrolase; Provisional
Probab=29.18 E-value=1.4e+02 Score=31.22 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=46.7
Q ss_pred CCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcC
Q 009162 90 GGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (541)
Q Consensus 90 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~I 169 (541)
+..+.+.+...+.|+.+|++|+..| ||+= +.+-|+ .=..+.++.++.|+.|++.=.||. ..
T Consensus 27 ~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T-----~~g~GR----d~~~l~~is~~tgv~Iv~~TG~y~---------~~ 87 (292)
T PRK09875 27 DCRLDQYAFICQEMNDLMTRGVRNV-IEMT-----NRYMGR----NAQFMLDVMRETGINVVACTGYYQ---------DA 87 (292)
T ss_pred ccccccHHHHHHHHHHHHHhCCCeE-EecC-----CCccCc----CHHHHHHHHHHhCCcEEEcCcCCC---------Cc
Confidence 3467888999999999999999887 4443 111222 246788899999999844333442 12
Q ss_pred CCChhhHh
Q 009162 170 PLPQWVLE 177 (541)
Q Consensus 170 pLP~WV~~ 177 (541)
-.|.|+.+
T Consensus 88 ~~p~~~~~ 95 (292)
T PRK09875 88 FFPEHVAT 95 (292)
T ss_pred cCCHHHhc
Confidence 36788864
No 203
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=29.17 E-value=1.5e+02 Score=31.69 Aligned_cols=64 Identities=22% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeE-EeeecccCCCcccccchHHHHH----HH-HHhCCCcEEEEEeeecCCCCCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEV-WWGVVERDRPGVYDWRGYFDLI----VL-ASNCGLKVRALLAFHQCGSGPGDP 166 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdV-WWGiVE~~~p~~YdWs~Y~~l~----~m-v~~~GLKv~~vmsFHqCGGNVGD~ 166 (541)
.+++..++.|+.+||.-|.+|. -|+.-.+... |..|.+.+ +. ++..|-++ -++.|-|.|+..+.
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccch
Confidence 4677788899999999999999 4776654322 23443332 22 23345566 56778999976653
No 204
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=29.11 E-value=1e+02 Score=30.08 Aligned_cols=49 Identities=18% Similarity=0.347 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
....++.-|+..+++|.+||++.. +..... +.+-.+++-+.++++||++
T Consensus 13 ~~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i 61 (274)
T COG1082 13 GELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEI 61 (274)
T ss_pred CCCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEE
Confidence 346788899999999999999977 222221 2222899999999999998
No 205
>PRK12677 xylose isomerase; Provisional
Probab=28.91 E-value=1.2e+02 Score=32.93 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCcceEEEe---EE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 98 AMAQSFKALAAAGVEGVVVE---VW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vd---VW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
.++.-+.+++++|++||++. ++ |+.-+.+ .+ ...+++-++++++||+|..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~----~~-~~~~~lk~~l~~~GL~v~~v 86 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAE----RD-RIIKRFKKALDETGLVVPMV 86 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhh----hH-HHHHHHHHHHHHcCCeeEEE
Confidence 47788999999999999883 12 3222111 01 14788999999999998433
No 206
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=28.74 E-value=2.2e+02 Score=29.15 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=50.8
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEE--eEEeeecccCCCcccccchHHHHHHHHHhC-CCcE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVV--EVWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKV 150 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~v--dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 150 (541)
..+||.+..-- .+.+...+..+..+++|+|+||+ +.+|..-|. + -..+|++++ +.. +|.|
T Consensus 69 ~~~~viagv~~---------~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~---~--i~~~~~~v~---~a~~~lpi 131 (288)
T cd00954 69 GKVTLIAHVGS---------LNLKESQELAKHAEELGYDAISAITPFYYKFSFE---E--IKDYYREII---AAAASLPM 131 (288)
T ss_pred CCCeEEeccCC---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHH---H--HHHHHHHHH---HhcCCCCE
Confidence 35677765533 23344455667889999999985 444542221 1 234455444 345 6665
Q ss_pred EEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCC-ceeeCCCCC
Q 009162 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGR 193 (541)
Q Consensus 151 ~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pd-i~ytD~~G~ 193 (541)
++ ++. . ....++||.=+...-.++|. +-++|.+|.
T Consensus 132 --~i-Yn~-P----~~tg~~l~~~~~~~L~~~pnivgiK~s~~d 167 (288)
T cd00954 132 --II-YHI-P----ALTGVNLTLEQFLELFEIPNVIGVKFTATD 167 (288)
T ss_pred --EE-EeC-c----cccCCCCCHHHHHHHhcCCCEEEEEeCCCC
Confidence 44 442 1 11224444434443345788 556777664
No 207
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=28.52 E-value=2e+02 Score=31.04 Aligned_cols=74 Identities=23% Similarity=0.179 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeecccC------CCcccccchHHHHHHHHHhCCCcEEEEEeee-cCCCCCCCCCcCCC
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVVERD------RPGVYDWRGYFDLIVLASNCGLKVRALLAFH-QCGSGPGDPKWVPL 171 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~------~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH-qCGGNVGD~~~IpL 171 (541)
-.+++++..++|++.|.+-+ +.=|.. ....-.+.-+.+++++++++|+++++.+|.- .|- |...++
T Consensus 123 n~~die~A~~~g~~~v~i~~--s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p----~~~r~~- 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFA--SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP----IEGPVP- 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC----ccCCCC-
Confidence 45677777788999987765 221111 1233456778899999999999998777532 121 122233
Q ss_pred ChhhHhhh
Q 009162 172 PQWVLEEI 179 (541)
Q Consensus 172 P~WV~~~g 179 (541)
|..|.+..
T Consensus 196 ~~~l~~~~ 203 (347)
T PLN02746 196 PSKVAYVA 203 (347)
T ss_pred HHHHHHHH
Confidence 77877743
No 208
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=28.42 E-value=1.5e+02 Score=28.50 Aligned_cols=107 Identities=15% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhc
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDK 181 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~ 181 (541)
++.+||+.||++|.+=+.-|. . |.=..|.+-++-|+++||++-+..=++.+. +.. .==.++++..++
T Consensus 16 d~~~vk~~gi~fviiKateG~------~-~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~~-----~~~-~qA~~f~~~~~~ 82 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG------D-HVDKRFAENWRGARAAGLPRGAYHFFTFCR-----SGA-EQAANFIRNVPK 82 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC------C-ccCHHHHHHHHHHHHcCCceEEEEEEecCC-----CHH-HHHHHHHHhcCC
Confidence 478889999999999985332 2 333678888899999999997776666432 110 000133332211
Q ss_pred CCCceeeCCCCCccccceecccCcccccCCC--CchHHHHHHHHHHHHHHhhhhc
Q 009162 182 DPDLAYSDRFGRRNMEYISLGCDILPVLRGR--SPIQAYTDFMRNFRDTFRPLLG 234 (541)
Q Consensus 182 ~pdi~ytD~~G~rn~E~LSlg~D~~pv~~GR--Tpiq~Y~dfm~sF~~~f~~~~g 234 (541)
+ . .-+-+++|-+.--... .......+.++.|.+++....|
T Consensus 83 ~------------~-~~~~~~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~~G 124 (191)
T cd06413 83 D------------P-GALPPVVDVEWNGNSATCPSAEEVLAELQVFLDALEAHYG 124 (191)
T ss_pred C------------C-CcCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 1 1 1122344544221111 2346677888889888887654
No 209
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.34 E-value=70 Score=34.47 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEE
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRA 152 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~ 152 (541)
+.+.|+.+++.|+++|..+. |.++-....+ .. -..++++.++++||+|+|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~~--~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDENG--KI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhcccccccc--cc-CCHHHHHHHHHcCCEEEE
Confidence 55778999999999866533 3343322222 22 567899999999999944
No 210
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=28.12 E-value=78 Score=33.59 Aligned_cols=60 Identities=27% Similarity=0.148 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
++++..+++|.++|++-|-+|.= |...= .. .=+.|.+++..+-+ |++.. .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~----~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFF----DE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhh----HH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 35677889999999999999976 76321 00 13456566655554 67764 44599988864
No 211
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=27.94 E-value=51 Score=33.77 Aligned_cols=31 Identities=16% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCeecCHHHHHHHHHHHHHcCcceEEEeEEee
Q 009162 90 GGKVKRRKAMAQSFKALAAAGVEGVVVEVWWG 121 (541)
Q Consensus 90 ~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWG 121 (541)
++++..+..+++-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg 53 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecC
Confidence 356777777777777776 9999999999954
No 212
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=27.92 E-value=1.6e+02 Score=35.34 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.0
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEe
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVE 117 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vd 117 (541)
+.+.+.++++++|+.||++|++-|.+-
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts 341 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS 341 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec
Confidence 556899999999999999999998874
No 213
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=27.68 E-value=2.1e+02 Score=34.57 Aligned_cols=65 Identities=17% Similarity=0.075 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc-------------ccchHHHHHHHHHhCCCcEEEEEeeecCC
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY-------------DWRGYFDLIVLASNCGLKVRALLAFHQCG 160 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y-------------dWs~Y~~l~~mv~~~GLKv~~vmsFHqCG 160 (541)
+.+.+.+.|..|+.+||+.|.+.=-+-.... +..-| ..+.++++++.++++||+|..=+-+.-++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4567899999999999999977654432211 12233 36779999999999999996665555444
No 214
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=27.35 E-value=1.6e+02 Score=32.89 Aligned_cols=52 Identities=6% Similarity=0.065 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEee
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 156 (541)
..+.++..+++..++||+.|.+-.--.-++ -.++.++.++++|+++++.+|+
T Consensus 94 pddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 94 ADDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 345678899999999999988876543332 3788999999999999988873
No 215
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=27.24 E-value=1.2e+02 Score=30.05 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCc
Q 009162 395 LPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSA 453 (541)
Q Consensus 395 ~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL 453 (541)
..|++.+.+.|.....+|+.-.--... ---..--+.++..+....++.|+.++|||.-
T Consensus 125 ~el~~~~~~~G~~~~i~~v~~~~l~~~-~lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 125 EEYLRELVERGFRFIIVSVSAYGLDES-WLGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHCCCEEEEEEEecCCCChH-HCCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 479999999999999999864321111 0012223578888899999999999999975
No 216
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.93 E-value=61 Score=33.27 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=39.3
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEe-eecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCC
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWW-GVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWW-GiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVG 164 (541)
.+.+...++ +.++.-++|+|.+|+=| |-+. ...++++|++++|+++ +++-| |.+++|
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi~----------~~~~~~~~a~~~gi~~--~~~~~-~~~~i~ 293 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGLT----------EALRIADLARAAGLKV--MVGCM-VESSLS 293 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCHH----------HHHHHHHHHHHcCCCE--EEECc-hhhHHH
Confidence 455555544 45677899999999763 4333 3479999999999999 55544 355554
No 217
>PRK12568 glycogen branching enzyme; Provisional
Probab=26.91 E-value=1.5e+02 Score=35.26 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=40.7
Q ss_pred ecCHHHHHHH-HHHHHHcCcceEEEeEEeeecccCCCccccc-----------------chHHHHHHHHHhCCCcEEEEE
Q 009162 93 VKRRKAMAQS-FKALAAAGVEGVVVEVWWGVVERDRPGVYDW-----------------RGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 93 ~~~~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-----------------s~Y~~l~~mv~~~GLKv~~vm 154 (541)
.-+.+.+... |..||++||+.|.+-= +.|. |...+| ..++++++.++++||+|..=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4466777777 5999999999997632 1221 222223 258999999999999995444
Q ss_pred ee
Q 009162 155 AF 156 (541)
Q Consensus 155 sF 156 (541)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 44
No 218
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.72 E-value=1.5e+02 Score=24.06 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=37.0
Q ss_pred HHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCee
Q 009162 396 PIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLE 448 (541)
Q Consensus 396 ~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~ 448 (541)
.+|.+|++.|..+++ +++++.--| ..++.+...+....++.||.+-
T Consensus 13 E~A~~l~~~g~~vtl--i~~~~~~~~-----~~~~~~~~~~~~~l~~~gV~v~ 58 (80)
T PF00070_consen 13 ELAEALAELGKEVTL--IERSDRLLP-----GFDPDAAKILEEYLRKRGVEVH 58 (80)
T ss_dssp HHHHHHHHTTSEEEE--EESSSSSST-----TSSHHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHhCcEEEE--Eeccchhhh-----hcCHHHHHHHHHHHHHCCCEEE
Confidence 578999999987765 888766543 5678899999999999999864
No 219
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=26.25 E-value=3.7e+02 Score=27.09 Aligned_cols=92 Identities=23% Similarity=0.252 Sum_probs=53.6
Q ss_pred HHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCCceeeCCC------CCccccceecccCcccccCCC
Q 009162 139 LIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAYSDRF------GRRNMEYISLGCDILPVLRGR 212 (541)
Q Consensus 139 l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~ytD~~------G~rn~E~LSlg~D~~pv~~GR 212 (541)
.++-+.+.++++ |+-.|.-==-+ +-.-.-||.||.++ -+||++..=+. .+|-++ -+ -.....+-
T Consensus 71 Aa~rI~~~~~~i--ivDtH~~IkTP-~GylpgLP~~Vl~~--l~pd~ivllEaDp~~Il~RR~~D-~~----r~Rd~es~ 140 (189)
T COG2019 71 AAKRIAEMALEI--IVDTHATIKTP-AGYLPGLPSWVLEE--LNPDVIVLLEADPEEILERRLRD-SR----RDRDVESV 140 (189)
T ss_pred HHHHHHHhhhce--EEeccceecCC-CccCCCCcHHHHHh--cCCCEEEEEeCCHHHHHHHHhcc-cc----cccccccH
Confidence 344455666664 99999643111 12344599999996 77898775332 112111 00 00112222
Q ss_pred CchHHHHHHHHHHHHHHhhhhcCceeEE
Q 009162 213 SPIQAYTDFMRNFRDTFRPLLGAIITGV 240 (541)
Q Consensus 213 Tpiq~Y~dfm~sF~~~f~~~~g~~I~eI 240 (541)
.-++.-.++-|.++-+.+-++|+++.=|
T Consensus 141 e~i~eHqe~nR~aA~a~A~~~gatVkIV 168 (189)
T COG2019 141 EEIREHQEMNRAAAMAYAILLGATVKIV 168 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 2566777888888888888888866555
No 220
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=26.21 E-value=1.5e+02 Score=27.86 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhhHhhhhcC
Q 009162 103 FKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWVLEEIDKD 182 (541)
Q Consensus 103 L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~ 182 (541)
..+||+.||++|++=+.=|.-- .=..|.+-.+.++++||++-+..-++.| |..| ...- =.|+.+..+
T Consensus 12 w~~~k~~gi~fviikateG~~~-------~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~-a~~q-A~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTSY-------VDPYFESNIKNAKAAGLPVGAYHFARAT--NSSD-AEAQ-ADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTTE-------E-TTHHHHHHHHHHTTSEEEEEEE--TT--THCH-HHHH-HHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCCe-------ecchHHHHHHHHHHcCCeEEEEEEeccC--Cccc-HHHH-HHHHHHHhc--
Confidence 6677999999999999755422 2245888899999999998776665544 2221 0000 113333221
Q ss_pred CCceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHHhhhhc
Q 009162 183 PDLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTFRPLLG 234 (541)
Q Consensus 183 pdi~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f~~~~g 234 (541)
+. .+-.|-+++|-+--...........+.++.|.+++....|
T Consensus 79 ---------~~-~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 79 ---------GG-DPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---------TS-STSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---------cc-CCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 11 1112223344331122334568899999999999977654
No 221
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=26.12 E-value=1.1e+02 Score=35.87 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=41.2
Q ss_pred HHHHHH--HHHHHHHcCcceEEEe-E----------------Eeeeccc---CCCccc----ccchHHHHHHHHHhCCCc
Q 009162 96 RKAMAQ--SFKALAAAGVEGVVVE-V----------------WWGVVER---DRPGVY----DWRGYFDLIVLASNCGLK 149 (541)
Q Consensus 96 ~~~~~~--~L~~LK~~GVdGV~vd-V----------------WWGiVE~---~~p~~Y----dWs~Y~~l~~mv~~~GLK 149 (541)
..++.. .|..||++||+.|.+- | .||.-=. .-+..| .-..++++++.+++.||+
T Consensus 181 f~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~ 260 (688)
T TIGR02100 181 YAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIE 260 (688)
T ss_pred HHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCE
Confidence 344544 4999999999999763 2 2442100 001122 244699999999999999
Q ss_pred EEEEEee-ecCC
Q 009162 150 VRALLAF-HQCG 160 (541)
Q Consensus 150 v~~vmsF-HqCG 160 (541)
|..=+-| |-+.
T Consensus 261 VIlDvV~NHt~~ 272 (688)
T TIGR02100 261 VILDVVYNHTAE 272 (688)
T ss_pred EEEEECcCCccC
Confidence 9665555 5443
No 222
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=25.87 E-value=2.2e+02 Score=29.00 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHh-CCCcEEEEEeeecCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASN-CGLKVRALLAFHQCGS 161 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~-~GLKv~~vmsFHqCGG 161 (541)
+.....+++|+++|++.|.+|.= |+..-. + ..++....+++.+.+.+ .|-+ ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 35667888999999999999874 554331 1 35678888888888876 3333 24588986
No 223
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=25.81 E-value=1.5e+02 Score=28.45 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
.++-++.++++|++.|.+--+. +..++.+.+++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999988743211 245677889999999 999988888
No 224
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=25.69 E-value=3.5e+02 Score=33.99 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=38.9
Q ss_pred HHHHHHHHcCcceEEE-eEE----------------eeeccc---CCCccc---ccchHHHHHHHHHhCCCcEEEEEee-
Q 009162 101 QSFKALAAAGVEGVVV-EVW----------------WGVVER---DRPGVY---DWRGYFDLIVLASNCGLKVRALLAF- 156 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~v-dVW----------------WGiVE~---~~p~~Y---dWs~Y~~l~~mv~~~GLKv~~vmsF- 156 (541)
..|..||++||+.|.+ +|+ ||.-=. .-+..| .-..++++++-++++||+|+.=+-|
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 3455999999999986 333 221000 001111 3456899999999999999665556
Q ss_pred ecCCCC
Q 009162 157 HQCGSG 162 (541)
Q Consensus 157 HqCGGN 162 (541)
|-+.+|
T Consensus 271 Ht~~~~ 276 (1221)
T PRK14510 271 HTGESN 276 (1221)
T ss_pred cccCCC
Confidence 655554
No 225
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.67 E-value=2.9e+02 Score=29.77 Aligned_cols=102 Identities=13% Similarity=0.203 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCcceEEEeEEeeec--cc--CCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChh
Q 009162 99 MAQSFKALAAAGVEGVVVEVWWGVV--ER--DRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQW 174 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVWWGiV--E~--~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~W 174 (541)
...+++++.++|++.|.+-+=-.-+ +. .......++...+.++.+++.|+++++..- |....+ |..
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e---------d~~r~~-~~~ 146 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE---------DASRTD-LDF 146 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec---------cCCCCC-HHH
Confidence 3566888889999987776532211 10 112344677888999999999999855321 233333 777
Q ss_pred hHhhhhc----CC-CceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHH
Q 009162 175 VLEEIDK----DP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (541)
Q Consensus 175 V~~~g~~----~p-di~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f 229 (541)
+.+..+. -+ .|.+.|-.| .-+|. .+.++.+.+++++
T Consensus 147 l~~~~~~~~~~Ga~~I~l~DT~G------------------~~~P~-~v~~lv~~l~~~~ 187 (378)
T PRK11858 147 LIEFAKAAEEAGADRVRFCDTVG------------------ILDPF-TMYELVKELVEAV 187 (378)
T ss_pred HHHHHHHHHhCCCCEEEEeccCC------------------CCCHH-HHHHHHHHHHHhc
Confidence 7764332 11 244444333 44574 4556777777665
No 226
>PRK15452 putative protease; Provisional
Probab=25.66 E-value=76 Score=35.20 Aligned_cols=37 Identities=11% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEE
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVV 116 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~v 116 (541)
+++|||.+| -.+.+ .+-+.+...|+.|+++|||||.|
T Consensus 59 g~kvyvt~n-~i~~e----~el~~~~~~l~~l~~~gvDgvIV 95 (443)
T PRK15452 59 GKKFYVVVN-IAPHN----AKLKTFIRDLEPVIAMKPDALIM 95 (443)
T ss_pred CCEEEEEec-CcCCH----HHHHHHHHHHHHHHhCCCCEEEE
No 227
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=25.65 E-value=7.9e+02 Score=26.13 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=46.4
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeE----Eeeec--------ccC---CCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEV----WWGVV--------ERD---RPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdV----WWGiV--------E~~---~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
.+-..+.|++.+..|.....+-.++-. -|-+- +.. ..+.|.=+-++++++.|++.|+.|+|-+
T Consensus 13 ~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 13 HFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEI 90 (348)
T ss_pred cCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEec
Confidence 455678999999999998888776532 23331 111 1356888899999999999999997755
No 228
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=25.58 E-value=1.9e+02 Score=29.01 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=46.9
Q ss_pred eeecceeccCCeecCHHHHHHHHHHHH-----HcCcc----eEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEE
Q 009162 81 KLPEDSTMIGGKVKRRKAMAQSFKALA-----AAGVE----GVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVR 151 (541)
Q Consensus 81 MlPLd~V~~~~~~~~~~~~~~~L~~LK-----~~GVd----GV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~ 151 (541)
++|-+.|. ++.+.|.++.+.-|++|+ .+|.. .|.|+.++.-+|+ +.+.+.++.+||++.
T Consensus 25 ~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~~ 92 (239)
T TIGR02529 25 MQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEVL 92 (239)
T ss_pred eccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCceE
Confidence 34444443 578999999999999998 34543 4677778877766 578899999999997
Q ss_pred EEEe
Q 009162 152 ALLA 155 (541)
Q Consensus 152 ~vms 155 (541)
.++.
T Consensus 93 ~li~ 96 (239)
T TIGR02529 93 HVLD 96 (239)
T ss_pred EEee
Confidence 7665
No 229
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.53 E-value=55 Score=35.52 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHc-CcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAA-GVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~-GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
.|..+++. ||+||.....+--. ...++-...+++-+.|+++||++-||=|
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEs 66 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIES 66 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 46778886 99999988764222 2345666788899999999999999877
No 230
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.41 E-value=7.6e+02 Score=26.21 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=39.9
Q ss_pred ecCHHHHHHHHHHHHHcCc--ceEEEeEE--------ee---ecccCC--C---ccccc------chHHHHHHHHHhCCC
Q 009162 93 VKRRKAMAQSFKALAAAGV--EGVVVEVW--------WG---VVERDR--P---GVYDW------RGYFDLIVLASNCGL 148 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GV--dGV~vdVW--------WG---iVE~~~--p---~~YdW------s~Y~~l~~mv~~~GL 148 (541)
..+.+.+..-++.+++.|+ |+|.+|.| |. -++..+ + +.++| --.+++++-+++.|+
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~ 99 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGV 99 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCC
Confidence 4578889999999999875 88999842 11 121111 1 11222 246899999999999
Q ss_pred cEEE
Q 009162 149 KVRA 152 (541)
Q Consensus 149 Kv~~ 152 (541)
|+..
T Consensus 100 kv~l 103 (340)
T cd06597 100 KVLL 103 (340)
T ss_pred EEEE
Confidence 9943
No 231
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=25.32 E-value=1.7e+02 Score=31.29 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=66.2
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
+-.+-|-.|-+ .+...+++++.++.|+..|.+.|--..=+...+.-+.- +=+--.+|-++..+-..|+ ||
T Consensus 10 gd~I~iIaPSs------~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il 79 (313)
T COG1619 10 GDEIGIIAPSS------GATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--IL 79 (313)
T ss_pred CCEEEEEecCc------ccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EE
Confidence 33444555554 34478999999999999998877666545433321100 0122456777777777777 88
Q ss_pred eeecCCCCCCCCCcCCCChhhHhhhhcCCCcee
Q 009162 155 AFHQCGSGPGDPKWVPLPQWVLEEIDKDPDLAY 187 (541)
Q Consensus 155 sFHqCGGNVGD~~~IpLP~WV~~~g~~~pdi~y 187 (541)
|.= | |..++==||-|-.+..+++|-||+
T Consensus 80 ~~r--G---Gygs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 80 CVR--G---GYGSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred Ecc--c---CCChhhhhhhcchHHHhcCCceEE
Confidence 854 4 446777799999988899998885
No 232
>PRK06233 hypothetical protein; Provisional
Probab=25.20 E-value=1.3e+02 Score=32.36 Aligned_cols=67 Identities=13% Similarity=0.186 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eee-cccCCC---cccccchHHHHHHH-------HHhCCCcEEEEEeeecCCCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGV-VERDRP---GVYDWRGYFDLIVL-------ASNCGLKVRALLAFHQCGSGPG 164 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGi-VE~~~p---~~YdWs~Y~~l~~m-------v~~~GLKv~~vmsFHqCGGNVG 164 (541)
+++++.+++|.++|++.|-+|.= |+. .+.... .--.+..|.++++. +-+ |+.--..+++|-|-||-.
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 46778889999999999999986 763 221101 00023334333222 222 553334679999998874
No 233
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.10 E-value=1.8e+02 Score=31.16 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCc----------ccccchHHHHHHHHHhCCCc-E
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPG----------VYDWRGYFDLIVLASNCGLK-V 150 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~----------~YdWs~Y~~l~~mv~~~GLK-v 150 (541)
..+++.||++||++|++.+ |...+. ..+|..=.+.++.++++|++ |
T Consensus 163 ~e~l~~Lk~aGv~r~~i~l-----ET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 163 EEEYAELVELGLDGVTVYQ-----ETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred HHHHHHHHHcCCCEEEEEE-----ecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 5677999999999999764 432222 34667777788999999996 6
No 234
>PRK05926 hypothetical protein; Provisional
Probab=25.07 E-value=68 Score=34.62 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCcceEEEeEE----eeecccCCCcccccchHHHHHHHHHhCCCcEEEEE
Q 009162 99 MAQSFKALAAAGVEGVVVEVW----WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALL 154 (541)
Q Consensus 99 ~~~~L~~LK~~GVdGV~vdVW----WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vm 154 (541)
.+..|++||++|++-+...-+ .-+-+.-.|++-....+.+..++++++||++-.-|
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sgm 227 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNATM 227 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCce
Confidence 467799999999987764300 11122233677777888999999999999994333
No 235
>TIGR03212 uraD_N-term-dom putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.
Probab=24.99 E-value=58 Score=34.08 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=25.7
Q ss_pred ccCCCCCCChHHHHHHHhhcCcEEEEeecc
Q 009162 385 YYNTSTRDGFLPIARIFGRYGFTLCCSCFE 414 (541)
Q Consensus 385 yYNt~~rdGY~~Ia~mf~rh~~~l~fTClE 414 (541)
.+.+-+|-|.-.|+++|+|||+..+|-+.-
T Consensus 70 ~~~YG~rvG~~RiLdlL~~~gv~aTffv~g 99 (297)
T TIGR03212 70 LYEYGSRAGFWRLLRLFTERGIPVTVFGVA 99 (297)
T ss_pred hhhhcchhCHHHHHHHHHHcCCCEEEEeEH
Confidence 456678899999999999999999997643
No 236
>PRK14566 triosephosphate isomerase; Provisional
Probab=24.88 E-value=1.2e+02 Score=31.47 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=36.0
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHH----HHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFD----LIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~----l~~mv~~~GLKv~~vms 155 (541)
+-..||++|+++|.|. .++++-.+..=++ -++.+.++||+. |+|
T Consensus 87 S~~mL~d~G~~~viiG--------HSERR~~f~Etd~~v~~Kv~~al~~gl~p--IvC 134 (260)
T PRK14566 87 SGQMLKDAGCRYVIIG--------HSERRRMYGETSNIVAEKFAAAQKHGLTP--ILC 134 (260)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCCCCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 4568999999999996 5677777777777 677888999988 888
No 237
>PTZ00445 p36-lilke protein; Provisional
Probab=24.83 E-value=1.7e+02 Score=29.95 Aligned_cols=62 Identities=11% Similarity=0.163 Sum_probs=47.2
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccc------------hHHHHHHHHHhCCCcEEEE
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWR------------GYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs------------~Y~~l~~mv~~~GLKv~~v 153 (541)
.++..+....=.+.||+.||..|-+|.==-+|...+.|..++. ..+++++.++++|++|.+|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VV 97 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVV 97 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence 4566677777778899999999999976666665555555553 4788999999999999444
No 238
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=24.78 E-value=1.4e+02 Score=26.82 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=32.5
Q ss_pred eecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 92 KVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 92 ~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
.+.+++....-|+.++++|+.+|-+- ++ +.=.++.++++++|+++
T Consensus 61 v~~~~~~~~~~v~~~~~~g~~~v~~~----------~g----~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 61 VCVPPDKVPEIVDEAAALGVKAVWLQ----------PG----AESEELIEAAREAGIRV 105 (116)
T ss_dssp E-S-HHHHHHHHHHHHHHT-SEEEE-----------TT----S--HHHHHHHHHTT-EE
T ss_pred EEcCHHHHHHHHHHHHHcCCCEEEEE----------cc----hHHHHHHHHHHHcCCEE
Confidence 35788999999999999999987653 22 55689999999999998
No 239
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=24.44 E-value=1.4e+02 Score=29.85 Aligned_cols=46 Identities=15% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEee
Q 009162 101 QSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAF 156 (541)
Q Consensus 101 ~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF 156 (541)
-+...||++|+++|.+. .++++|.=+--.+-++.+.++||+. |+|.
T Consensus 72 vS~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 72 ISAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CCHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 34678999999999996 5566666665666777888999987 8884
No 240
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=24.42 E-value=5e+02 Score=26.82 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=50.2
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEe--EEeeecccCCCcccccchHHHHHHHHHhC-CCcE
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVE--VWWGVVERDRPGVYDWRGYFDLIVLASNC-GLKV 150 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vd--VWWGiVE~~~p~~YdWs~Y~~l~~mv~~~-GLKv 150 (541)
..+||.+..-- .+.+.-.+..+..+++|+|+|++- -++..-|.+ -..+|+++.+ +. +|.+
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~-----i~~yf~~v~~---~~~~lpv 131 (290)
T TIGR00683 69 DQIALIAQVGS---------VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPE-----IKHYYDTIIA---ETGGLNM 131 (290)
T ss_pred CCCcEEEecCC---------CCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHH-----HHHHHHHHHh---hCCCCCE
Confidence 35787766432 223444555677899999999982 233322211 2334444443 44 5665
Q ss_pred EEEEeeecCCCCCCCCCcCCCChhhHhhhhcCCC-ceeeCCCCC
Q 009162 151 RALLAFHQCGSGPGDPKWVPLPQWVLEEIDKDPD-LAYSDRFGR 193 (541)
Q Consensus 151 ~~vmsFHqCGGNVGD~~~IpLP~WV~~~g~~~pd-i~ytD~~G~ 193 (541)
+ =+|- .+ ...++||.-+...-.++|. +-++|.+|.
T Consensus 132 --~-lYn~----P~-~tg~~l~~~~i~~L~~~pnv~giK~s~~d 167 (290)
T TIGR00683 132 --I-VYSI----PF-LTGVNMGIEQFGELYKNPKVLGVKFTAGD 167 (290)
T ss_pred --E-EEeC----cc-ccccCcCHHHHHHHhcCCCEEEEEeCCCC
Confidence 3 3331 11 1224566655554446788 455776664
No 241
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=24.27 E-value=1.9e+02 Score=31.20 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=47.2
Q ss_pred cCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccch-----HHHHHHHHHhCCCcEEEEEeee
Q 009162 89 IGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----YFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 89 ~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
--|.+.+++++..--+.||++|.+.+...+| +..-.-|.|.+ |+-|.+.+++.||.+ +-..|
T Consensus 99 GPCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 99 GPCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred ecCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 3467899999999999999999997776666 22222255554 999999999999999 55544
No 242
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=24.16 E-value=2.6e+02 Score=26.42 Aligned_cols=78 Identities=12% Similarity=0.134 Sum_probs=47.8
Q ss_pred EEEcceeccCCCCCChhh----hcccccCCCCCCChHHHHHHHhhcCcEEEEeecccccCCcCC--CCCCCChHHHHHHH
Q 009162 363 AKVGGIHWHYGTPSHPSE----LTAGYYNTSTRDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQ--MNPFSSPEGFLRQL 436 (541)
Q Consensus 363 aKV~GIHWwy~t~SHaAE----lTAGyYNt~~rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~--~~~~s~Pe~Lv~QV 436 (541)
+++.|+||+|........ +.-|+ .....-|.++++.|++. +...+++++....+. ....-+-+.+++.+
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~vv~~hG~--~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 85 (278)
T TIGR03056 11 VTVGPFHWHVQDMGPTAGPLLLLLHGT--GASTHSWRDLMPPLARS---FRVVAPDLPGHGFTRAPFRFRFTLPSMAEDL 85 (278)
T ss_pred eeECCEEEEEEecCCCCCCeEEEEcCC--CCCHHHHHHHHHHHhhC---cEEEeecCCCCCCCCCccccCCCHHHHHHHH
Confidence 378999999986543211 11143 22344588999999874 455567777543220 12134678888888
Q ss_pred HHHHHHcCC
Q 009162 437 LLAARICEI 445 (541)
Q Consensus 437 ~~aa~~~Gv 445 (541)
.+.....++
T Consensus 86 ~~~i~~~~~ 94 (278)
T TIGR03056 86 SALCAAEGL 94 (278)
T ss_pred HHHHHHcCC
Confidence 888776653
No 243
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=23.99 E-value=1.5e+02 Score=29.20 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=55.2
Q ss_pred HHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCeecccCccccChHHHHHHHHhhcccCCCC
Q 009162 396 PIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPLEGENSATSLDDAAFQQVIKMSKFYSEGL 475 (541)
Q Consensus 396 ~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~~~~~~ 475 (541)
.+.+.++++|..+.+..++..|-... ....|+..+++|+..++.-.|-|.=.+.. ...+++.+|+...+-
T Consensus 143 ~~~~~l~~~Gy~~v~w~v~~~Dw~~~---~~~~~~~~~~~v~~~~~~g~IiLlHd~~~--~t~~aL~~ii~~lk~----- 212 (224)
T TIGR02884 143 RTLAYTKELGYYTVFWSLAFKDWKVD---EQPGWQYAYKQIMKKIHPGAILLLHAVSK--DNAEALDKIIKDLKE----- 212 (224)
T ss_pred HHHHHHHHcCCcEEeccccCcccCCC---CCCCHHHHHHHHHhcCCCCcEEEEECCCC--CHHHHHHHHHHHHHH-----
Confidence 57889999999999999987776532 12457888999887665444554433211 134689999987742
Q ss_pred CCCcceeeEecCCcc
Q 009162 476 EKPSFSFNFLRMDKN 490 (541)
Q Consensus 476 ~~~~~~FTylRm~~~ 490 (541)
. +|+|.++.+.
T Consensus 213 ~----Gy~fvtl~el 223 (224)
T TIGR02884 213 Q----GYTFKSLDDL 223 (224)
T ss_pred C----CCEEEEhHHc
Confidence 2 6778777653
No 244
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=23.96 E-value=72 Score=31.08 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeE
Q 009162 97 KAMAQSFKALAAAGVEGVVVEV 118 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdV 118 (541)
+++++.|+.|+++||+||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999963
No 245
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=23.74 E-value=85 Score=32.75 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCcceEEEeEEeeeccc---CCCcccccchHHHHHHHHHhCCCcEEE--EEeee
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVER---DRPGVYDWRGYFDLIVLASNCGLKVRA--LLAFH 157 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~---~~p~~YdWs~Y~~l~~mv~~~GLKv~~--vmsFH 157 (541)
+.+|++||..+||.|.+|.. |.=|- -=-..+.=.-|.+.+.++++.|++|.| ++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 11110 000112234699999999999999965 44444
No 246
>PRK00957 methionine synthase; Provisional
Probab=23.36 E-value=1.3e+02 Score=30.90 Aligned_cols=79 Identities=23% Similarity=0.298 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcCCCChhh
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWVPLPQWV 175 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~IpLP~WV 175 (541)
+++...+++|+++|++.|.+|.= |.. +-.+++...+.++.+.+ ++++ ....|-|| |.. |.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG-~~~-------~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCG-DVS-------NII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECC-CcH-------HHH-
Confidence 46677888899999999999863 553 11234444444444433 3344 34579995 321 212
Q ss_pred HhhhhcCCCceeeCCCCC
Q 009162 176 LEEIDKDPDLAYSDRFGR 193 (541)
Q Consensus 176 ~~~g~~~pdi~ytD~~G~ 193 (541)
-...+.+-|.+..|-.|.
T Consensus 206 ~~l~~~~vd~i~ld~~~~ 223 (305)
T PRK00957 206 DDLLKFNVDILDHEFASN 223 (305)
T ss_pred HHHHhCCCCEEEEeecCC
Confidence 122346678888887654
No 247
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=23.25 E-value=1.5e+02 Score=30.88 Aligned_cols=69 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred CCcceEEeeecceeccCCeecCHHHHHHHHHHHHH-cCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCC
Q 009162 74 NGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAA-AGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCG 147 (541)
Q Consensus 74 ~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~-~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~G 147 (541)
.+.+.-||.||.-=+--++..+++.+...||+||- +--.|+. |+|||-|=..-.-..--+.++.|+++|
T Consensus 95 cGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~-----GLVEPLGF~~csLRsk~eA~~aI~aa~ 164 (272)
T COG4130 95 CGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT-----GLVEPLGFRVCSLRSKAEAAEAIRAAG 164 (272)
T ss_pred cCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc-----ccccccCchhhhhhhHHHHHHHHHHhC
No 248
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.21 E-value=2.3e+02 Score=27.37 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=41.4
Q ss_pred CCCcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc------ccchHHHHHHHHHhC
Q 009162 73 RNGSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY------DWRGYFDLIVLASNC 146 (541)
Q Consensus 73 ~~~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y------dWs~Y~~l~~mv~~~ 146 (541)
....|+.+-+-- ++++.+.+.-+.++++|+|+|.+.+---..... .++| +..-..++++-+++.
T Consensus 52 ~~~~p~~~qi~g---------~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~-~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 52 PEERPLIVQLGG---------SDPETLAEAAKIVEELGADGIDLNMGCPSPKVT-KGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred ccCCCEEEEEcC---------CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHh-CCCeeehhcCCHHHHHHHHHHHHHh
Confidence 345666554432 578999999999999999999998742111111 1222 566667777777653
No 249
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=23.20 E-value=1.1e+02 Score=36.09 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHH-HHHHHHhC--CCcEEEEEeeecCCCCCCCCCcCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFD-LIVLASNC--GLKVRALLAFHQCGSGPGDPKWVPLP 172 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~-l~~mv~~~--GLKv~~vmsFHqCGGNVGD~~~IpLP 172 (541)
.+++..++.|.++|+.-|-+|.= |- |.-.-.+=+|..|.+ ..+..+.+ |++--.-+..|-|-||.+| +=
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~--~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~-----i~ 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALR--EGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNE-----II 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhh--hcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHH-----HH
Confidence 36677889999999999999986 52 322112235555432 33444331 5431123489999998762 11
Q ss_pred hhhHhhhhcCCCceeeC
Q 009162 173 QWVLEEIDKDPDLAYSD 189 (541)
Q Consensus 173 ~WV~~~g~~~pdi~ytD 189 (541)
.++. +.+-|.+..|
T Consensus 648 ~~l~---~l~vD~i~lE 661 (750)
T TIGR01371 648 ESIA---DLDADVISIE 661 (750)
T ss_pred HHHH---hCCCCEEEEE
Confidence 3443 3566777776
No 250
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=23.18 E-value=1.5e+02 Score=33.14 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+.+.+.+..+.++++|...|||++.+| |+..+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 479999999999999999999997664 4556777777778877665555555
No 251
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=23.00 E-value=1.3e+02 Score=30.35 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
.+...++.+-++|+++|.+-+.+|. .++.++- .--.++.+.++++|+.+.++
T Consensus 91 ~~~~~v~~al~~Ga~~v~~~~~~g~---~~~~~~~-~~~~~i~~~~~~~g~~liv~ 142 (258)
T TIGR01949 91 RIVTTVEDAIRMGADAVSIHVNVGS---DTEWEQI-RDLGMIAEICDDWGVPLLAM 142 (258)
T ss_pred eeeeeHHHHHHCCCCEEEEEEecCC---chHHHHH-HHHHHHHHHHHHcCCCEEEE
Confidence 3555678888999999999998774 1122222 45566777778899988653
No 252
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.99 E-value=7.7e+02 Score=25.87 Aligned_cols=88 Identities=22% Similarity=0.280 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCc-----cc-----ccchHHHHHHHHHhCCCcEEEEEeeecCCCC
Q 009162 95 RRKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPG-----VY-----DWRGYFDLIVLASNCGLKVRALLAFHQCGSG 162 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~-----~Y-----dWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGN 162 (541)
..+.+..-++.+++.| +|.|.+|-|=...+.. -+ .| .|.-.+++++-+++.|+|+.+++-=|-
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~-~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v---- 95 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETS-FGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYL---- 95 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCccccc-ccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCce----
Confidence 7788889999999875 6889999762211211 11 12 345678999999999999955443111
Q ss_pred CCCCCcCCCChhhHhhhhcCCCceeeCCCCCc
Q 009162 163 PGDPKWVPLPQWVLEEIDKDPDLAYSDRFGRR 194 (541)
Q Consensus 163 VGD~~~IpLP~WV~~~g~~~pdi~ytD~~G~r 194 (541)
. .+ -+... +++.+ .+.++++.+|..
T Consensus 96 -~--~~--~~~~y-~~~~~-~g~~vk~~~g~~ 120 (317)
T cd06594 96 -A--DD--GPLYY-EEAKD-AGYLVKDADGSP 120 (317)
T ss_pred -e--cC--CchhH-HHHHH-CCeEEECCCCCe
Confidence 1 11 12223 44443 489999998863
No 253
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.94 E-value=1.7e+02 Score=29.94 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 95 RRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 95 ~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
+.+..+.++++....|++.|.+-+-.. +.+--.+.++.+++.|+++++-++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 445678899999999999988855322 245678889999999999876444
No 254
>PLN02784 alpha-amylase
Probab=22.67 E-value=2e+02 Score=35.05 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc-------------chHHHHHHHHHhCCCcEEEEEee-ecCCC
Q 009162 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW-------------RGYFDLIVLASNCGLKVRALLAF-HQCGS 161 (541)
Q Consensus 96 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW-------------s~Y~~l~~mv~~~GLKv~~vmsF-HqCGG 161 (541)
++.|...|..|+++||++|-+.-= .+..++..|+- ..+++|++.++++|+||.+=+-+ |-||.
T Consensus 520 ~~~I~ekldyL~~LG~taIWLpP~---~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag~ 596 (894)
T PLN02784 520 YMELGEKAAELSSLGFTVVWLPPP---TESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCAH 596 (894)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCC---CCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECccccccc
Confidence 689999999999999999988763 23333334432 35889999999999999654444 77664
No 255
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=22.66 E-value=95 Score=32.98 Aligned_cols=65 Identities=20% Similarity=0.120 Sum_probs=44.8
Q ss_pred ecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcC
Q 009162 93 VKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV 169 (541)
Q Consensus 93 ~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~I 169 (541)
++....++.-...|+..|++- +++..||++ | +.+.-+++++++++.+....+-+. ||.|-|...+
T Consensus 35 ~~~~g~~~~v~~~L~~~g~~~----~~~~~v~~~-p---~~~~v~~~~~~~~~~~~D~IIavG----GGSviD~AK~ 99 (375)
T cd08179 35 MKKFGFLDKVEAYLKEAGIEV----EVFEGVEPD-P---SVETVLKGAEAMREFEPDWIIALG----GGSPIDAAKA 99 (375)
T ss_pred HHhCChHHHHHHHHHHcCCeE----EEeCCCCCC-c---CHHHHHHHHHHHHhcCCCEEEEeC----CccHHHHHHH
Confidence 333344445555677888863 245556655 2 678899999999999998866555 8888887644
No 256
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.28 E-value=1.7e+02 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCC-------cccccchHHHHHHHHHhCCCcEEEE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
+..|+.||++|+..|.+.+ |...+ +..+.+.+.+.+++++++|+++.+-
T Consensus 287 ~ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred HHHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 3567889999999888864 55433 4567888999999999999987543
No 257
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=22.24 E-value=1.9e+02 Score=27.71 Aligned_cols=63 Identities=25% Similarity=0.224 Sum_probs=40.9
Q ss_pred CcceEEeeecceeccCCeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 75 GSPVFVKLPEDSTMIGGKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 75 ~vpv~VMlPLd~V~~~~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
..-.++.+|.. ...++.+.-.+.+++.|+.||.+..-.+-.-.. +-..++++++.++++|+-|
T Consensus 71 ~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~Gv~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~pv 133 (273)
T PF04909_consen 71 RFIGFAAIPPP--------DPEDAVEELERALQELGFRGVKLHPDLGGFDPD-----DPRLDDPIFEAAEELGLPV 133 (273)
T ss_dssp TEEEEEEETTT--------SHHHHHHHHHHHHHTTTESEEEEESSETTCCTT-----SGHCHHHHHHHHHHHT-EE
T ss_pred CEEEEEEecCC--------CchhHHHHHHHhccccceeeeEecCCCCccccc-----cHHHHHHHHHHHHhhccce
Confidence 44455555552 244667777777779999999987755443333 2222379999999999744
No 258
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.20 E-value=2.4e+02 Score=29.45 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeEEeeecccCCCcccccc-----hHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 96 RKAMAQSFKALAAAG--VEGVVVEVWWGVVERDRPGVYDWR-----GYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 96 ~~~~~~~L~~LK~~G--VdGV~vdVWWGiVE~~~p~~YdWs-----~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
.+.+..-++.+++.| +|.|.+|.=|-.-+...-+.|+|. --+++++-+++.|+|+ +++.|-+=. +.
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~-----~~ 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLL-----QD 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCccc-----CC
Confidence 678888888998877 478888743322222112335554 3678899999999999 555443321 11
Q ss_pred CCCChhhHhhhhcCCCceeeCCCCC
Q 009162 169 VPLPQWVLEEIDKDPDLAYSDRFGR 193 (541)
Q Consensus 169 IpLP~WV~~~g~~~pdi~ytD~~G~ 193 (541)
- |. -+++.+ -+.|.++.+|.
T Consensus 101 ~--~~--y~e~~~-~g~~v~~~~g~ 120 (317)
T cd06599 101 H--PR--YKELKE-AGAFIKPPDGR 120 (317)
T ss_pred C--HH--HHHHHH-CCcEEEcCCCC
Confidence 1 22 344444 38888988775
No 259
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.11 E-value=2e+02 Score=27.41 Aligned_cols=43 Identities=21% Similarity=0.019 Sum_probs=33.4
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
+++.++++|+|.|.+.+-.+. ..-.++.+.+++.|+++.+-|+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~-----------~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADD-----------ATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCH-----------HHHHHHHHHHHHcCCEEEEEec
Confidence 688899999999999865421 1236799999999999976543
No 260
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=22.09 E-value=2.5e+02 Score=27.57 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=41.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
.+.+.+.+.+++||+. +|-|.+-.=||.-....|. ..-+++++.+-+.|..+ |++=|
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H 215 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHH 215 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCC
Confidence 3568899999999988 9999999999973322222 23356666666789888 88866
No 261
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.07 E-value=82 Score=31.21 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=30.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc--ccchHHHHHHHHHhC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DWRGYFDLIVLASNC 146 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~ 146 (541)
-|...+++++++|+++|++.+++||= +|+| |.+-=-+.++-+|+.
T Consensus 9 ad~~~l~~~i~~l~~~g~d~lHiDiM--------Dg~fvpn~~~g~~~i~~i~~~ 55 (201)
T PF00834_consen 9 ADFLNLEEEIKRLEEAGADWLHIDIM--------DGHFVPNLTFGPDIIKAIRKI 55 (201)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEEEE--------BSSSSSSB-B-HHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeec--------ccccCCcccCCHHHHHHHhhc
Confidence 36778999999999999999999995 4444 244444555555555
No 262
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=22.04 E-value=1e+02 Score=30.81 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=34.6
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEE-eeecccCCCcccccchHHHHHHHHHhCCCcE
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVW-WGVVERDRPGVYDWRGYFDLIVLASNCGLKV 150 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVW-WGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv 150 (541)
..+.++..++. .+++-.+|.|.+|+= +|-+. ..++++++++++|+++
T Consensus 187 E~~~~~~~~~~---~i~~~~~d~v~~k~~~~GGi~----------~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 187 ESAFTPHDAFR---ELALGAADAVNIKTAKTGGLT----------KAQRVLAVAEALGLPV 234 (265)
T ss_pred CCCCCHHHHHH---HHHhCCCCEEEEecccccCHH----------HHHHHHHHHHHcCCcE
Confidence 34555555443 556778999999976 56543 3589999999999999
No 263
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=21.90 E-value=1.5e+02 Score=29.34 Aligned_cols=60 Identities=8% Similarity=0.060 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc--chHHHHHHHHHhCCCcEEEEEeee
Q 009162 96 RKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW--RGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 96 ~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW--s~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
.+.++..++..+.+|++.|.+.-+-..-++..+..+++ ...+++.+++++.|+++ .+=+|
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 35578888889999999998631100011111111111 35788999999999988 66666
No 264
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.85 E-value=1.9e+02 Score=30.49 Aligned_cols=52 Identities=21% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCC-------cccccchHHHHHHHHHhCCCc-EEEEEee
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRP-------GVYDWRGYFDLIVLASNCGLK-VRALLAF 156 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p-------~~YdWs~Y~~l~~mv~~~GLK-v~~vmsF 156 (541)
+..|+.||++||+.|.+. ||.-.| ...+++-+.+.+++++++|++ |.+-|-|
T Consensus 100 ~e~l~~l~~~Gv~risiG-----vqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~ 159 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLG-----VQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMY 159 (360)
T ss_pred HHHHHHHHHcCCCEEEEe-----cccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccC
No 265
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=21.77 E-value=2.3e+02 Score=26.09 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=39.1
Q ss_pred CCChHHHHHHHhhcCcEEEEeecccccCCcCCCCCCCChHHHHHHHHHHHHHcCCCe
Q 009162 391 RDGFLPIARIFGRYGFTLCCSCFEMRDVDEKQMNPFSSPEGFLRQLLLAARICEIPL 447 (541)
Q Consensus 391 rdGY~~Ia~mf~rh~~~l~fTClEM~d~eqp~~~~~s~Pe~Lv~QV~~aa~~~Gv~~ 447 (541)
.-|+..+.+.+++..+.|.|-+- .++|.++...+...|+++||++
T Consensus 32 v~G~~~v~kaikkgkakLVilA~------------D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 32 KKGTNETTKAVERGIAKLVVIAE------------DVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred eEcHHHHHHHHHcCCccEEEEeC------------CCChHHHHHHHHHHHHHcCCCE
Confidence 45888999999999999999864 3678888999999999999996
No 266
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=21.72 E-value=2.9e+02 Score=25.12 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH-cCcceEEEeEEeeecc-cCCCcccccchHHHH-HHHHHhCCCcEEEEEeeec
Q 009162 97 KAMAQSFKALAA-AGVEGVVVEVWWGVVE-RDRPGVYDWRGYFDL-IVLASNCGLKVRALLAFHQ 158 (541)
Q Consensus 97 ~~~~~~L~~LK~-~GVdGV~vdVWWGiVE-~~~p~~YdWs~Y~~l-~~mv~~~GLKv~~vmsFHq 158 (541)
+-+-+++++||. .|.|.|.+.-== +.+ |+=| ....++. -..+++.|+|| ||+.|-
T Consensus 42 rlvpn~~k~lk~~egaeaihfasCm-l~~~PkCp----y~~~eei~Kk~ie~~~i~V--v~gTH~ 99 (101)
T COG5561 42 RLVPNQIKQLKGKEGAEAIHFASCM-LAFKPKCP----YASAEEIAKKEIEKMGIKV--VMGTHF 99 (101)
T ss_pred chhHHHHHHHhhccccceeeeeeee-eccCCCCC----ccCHHHHHHHHHHHhCCcE--Eeecce
Confidence 667789999996 679998876432 233 3322 2223555 45688999999 999994
No 267
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.69 E-value=2.4e+02 Score=30.17 Aligned_cols=45 Identities=27% Similarity=0.389 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcc----------cccchHHHHHHHHHhCCCc
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGV----------YDWRGYFDLIVLASNCGLK 149 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~----------YdWs~Y~~l~~mv~~~GLK 149 (541)
..++++||++||+.+++.+ |.-.|.. -+|..-.+.++.++++|++
T Consensus 162 ~e~~~~Lk~aGv~r~~i~l-----ET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~ 216 (366)
T TIGR02351 162 EEEYKKLVEAGLDGVTVYQ-----ETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMR 216 (366)
T ss_pred HHHHHHHHHcCCCEEEEEe-----ecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4567999999999999864 4322322 2455567789999999997
No 268
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.65 E-value=2.4e+02 Score=27.62 Aligned_cols=57 Identities=14% Similarity=-0.011 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeecccCCCccccc----chHHHHHHHHHhCCCcEEEEEeee
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDW----RGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdW----s~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+.+++-+...+.+|+..|. ++.|......+.+=.| +..+++++++++.|+++ .+=.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5677778889999999775 5666543221111123 45788999999999887 55544
No 269
>PRK08005 epimerase; Validated
Probab=21.58 E-value=98 Score=31.06 Aligned_cols=45 Identities=11% Similarity=0.064 Sum_probs=33.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCccc--ccchHHHHHHHHHhC
Q 009162 94 KRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVY--DWRGYFDLIVLASNC 146 (541)
Q Consensus 94 ~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~Y--dWs~Y~~l~~mv~~~ 146 (541)
.|...++++|++|+++|+|-+++||= +|+| |.+-=-+.++.+|+.
T Consensus 10 ad~~~l~~el~~l~~~g~d~lHiDvM--------DG~FVPN~tfG~~~i~~l~~~ 56 (210)
T PRK08005 10 ADPLRYAEALTALHDAPLGSLHLDIE--------DTSFINNITFGMKTIQAVAQQ 56 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecc--------CCCcCCccccCHHHHHHHHhc
Confidence 47789999999999999999999983 6666 334334455555553
No 270
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=21.30 E-value=3e+02 Score=28.20 Aligned_cols=72 Identities=14% Similarity=0.367 Sum_probs=49.7
Q ss_pred HHHHHHHHH---HcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCC-----CCCCCcCC
Q 009162 99 MAQSFKALA---AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSG-----PGDPKWVP 170 (541)
Q Consensus 99 ~~~~L~~LK---~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGN-----VGD~~~Ip 170 (541)
++.++++|| ++|++.+.... -||-..|.++.+.+++.|+++-++.++--|..- .-.-|.|.
T Consensus 143 ~~~~~~~L~~K~~aGA~f~iTQ~-----------~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~~~Gv~ 211 (272)
T TIGR00676 143 LEEDIENLKRKVDAGADYAITQL-----------FFDNDDYYRFVDRCRAAGIDVPIIPGIMPITNFKQLLRFAERCGAE 211 (272)
T ss_pred HHHHHHHHHHHHHcCCCeEeecc-----------ccCHHHHHHHHHHHHHcCCCCCEecccCCcCCHHHHHHHHhccCCC
Confidence 555555554 58998776533 478899999999999999888666655433310 00024589
Q ss_pred CChhhHhhhhc
Q 009162 171 LPQWVLEEIDK 181 (541)
Q Consensus 171 LP~WV~~~g~~ 181 (541)
+|.|+.+..++
T Consensus 212 vP~~~~~~l~~ 222 (272)
T TIGR00676 212 IPAWLVKRLEK 222 (272)
T ss_pred CCHHHHHHHHh
Confidence 99999997654
No 271
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=21.20 E-value=1.5e+02 Score=31.65 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeEE--eeecccC------CCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCC
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVW--WGVVERD------RPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGP 163 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVW--WGiVE~~------~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNV 163 (541)
+.+...|++|+..|+|||-+|+= |--||.. ++-+=.=..|.++.+.+|.+.=-+.+|- |.|+++
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~---qng~~l 197 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIP---QNGAEL 197 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEe---cccHhh
Confidence 46788999999999999988863 3222221 2233334458899999998765554443 455444
No 272
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=21.05 E-value=88 Score=38.21 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=33.5
Q ss_pred cCcceEEEeEEeeecccCCCcccccchHH---HHHHHHHhCCCcEEEEEeeecCCCCCCC
Q 009162 109 AGVEGVVVEVWWGVVERDRPGVYDWRGYF---DLIVLASNCGLKVRALLAFHQCGSGPGD 165 (541)
Q Consensus 109 ~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~---~l~~mv~~~GLKv~~vmsFHqCGGNVGD 165 (541)
.|.--||+.--=+-... |-=-=+|+-|+ +|.++++++|+|+.+ ||.+||.||-
T Consensus 616 ~~~qeVMlGYSDS~Kd~-G~laa~w~l~~Aq~~L~~~~~~~gV~l~~---FhGrGGsvgR 671 (974)
T PTZ00398 616 NGIQEIMIGYSDSGKDG-GRLTSAWELYKAQERLSNIARQYGVEIRF---FHGRGGSVSR 671 (974)
T ss_pred CCeEEEEEecccccccc-cHHHHHHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCC
Confidence 66777777542111110 01111577665 567778999999844 8999999984
No 273
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=20.97 E-value=83 Score=38.13 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=26.9
Q ss_pred ccchHH---HHHHHHHhCCCcEEEEEeeecCCCCCCCCCc
Q 009162 132 DWRGYF---DLIVLASNCGLKVRALLAFHQCGSGPGDPKW 168 (541)
Q Consensus 132 dWs~Y~---~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~ 168 (541)
+|+-|+ +|.++++++|+|+.+ ||.+||.||--.-
T Consensus 581 ~w~l~~Aq~~L~~~~~~~gv~l~~---FhGrGGsv~RGGg 617 (911)
T PRK00009 581 NWALYRAQEALVELAEKHGVRLTL---FHGRGGTVGRGGG 617 (911)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---ecCCCCCCCCCCC
Confidence 687776 567778999999844 8999999986444
No 274
>PRK14705 glycogen branching enzyme; Provisional
Probab=20.92 E-value=1.8e+02 Score=36.56 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHH-HHHHHHcCcceEEEeEEeeecccCCCcccccch-----------------HHHHHHHHHhCCCcEEEEEe
Q 009162 96 RKAMAQS-FKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-----------------YFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 96 ~~~~~~~-L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-----------------Y~~l~~mv~~~GLKv~~vms 155 (541)
-+++... |..||++||+.|.+== +.| -|...+|-| ++++++.++++||+| ||-
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmP---v~e--~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD 834 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMP---VAE--HPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLD 834 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECc---ccc--CCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEE
Confidence 3555555 6999999999997531 233 244445533 799999999999999 554
No 275
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=20.80 E-value=1.7e+02 Score=30.83 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeEEeeecccCCCcccccch-------HHHHHHHHHhCCCc-EEEEE
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRG-------YFDLIVLASNCGLK-VRALL 154 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~-------Y~~l~~mv~~~GLK-v~~vm 154 (541)
+..|+.||++||+.|.+.| |.-.+...+.-+ +.+.+++++++|++ |.+-|
T Consensus 99 ~e~l~~l~~~G~~rvsiGv-----qS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dl 156 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL-----QAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDL 156 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC-----ccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEe
No 276
>PRK14565 triosephosphate isomerase; Provisional
Probab=20.71 E-value=1.7e+02 Score=29.98 Aligned_cols=44 Identities=20% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHH----HHHHhCCCcEEEEEe
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLI----VLASNCGLKVRALLA 155 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~----~mv~~~GLKv~~vms 155 (541)
+-..||++|++.|.+. .++++=.+..=++++ +.+.++||+. |+|
T Consensus 77 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~V~~Kv~~al~~gl~p--IvC 124 (237)
T PRK14565 77 SAKMLKECGCSYVILG--------HSERRSTFHETDSDIRLKAESAIESGLIP--IIC 124 (237)
T ss_pred CHHHHHHcCCCEEEEC--------cccccCcCCcCHHHHHHHHHHHHHCCCEE--EEE
Confidence 4578999999999996 556666677777777 7888899987 888
No 277
>PLN03231 putative alpha-galactosidase; Provisional
Probab=20.66 E-value=1e+02 Score=33.51 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=34.3
Q ss_pred HHHHHcCcceEEEeEEeeeccc----------------CCCcccc-----cc------hHHHHHHHHHhCCCcE
Q 009162 104 KALAAAGVEGVVVEVWWGVVER----------------DRPGVYD-----WR------GYFDLIVLASNCGLKV 150 (541)
Q Consensus 104 ~~LK~~GVdGV~vdVWWGiVE~----------------~~p~~Yd-----Ws------~Y~~l~~mv~~~GLKv 150 (541)
+-||.+|-+-|.||.-|-.-++ ..-|+.- |- |.+.|++.|++.|||+
T Consensus 29 ~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKf 102 (357)
T PLN03231 29 ETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKL 102 (357)
T ss_pred cchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcce
Confidence 3689999999999977754321 1122222 22 8999999999999998
No 278
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=20.63 E-value=64 Score=25.39 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.4
Q ss_pred CCChHHHHHHHHHHHHHcCCCeecc
Q 009162 426 FSSPEGFLRQLLLAARICEIPLEGE 450 (541)
Q Consensus 426 ~s~Pe~Lv~QV~~aa~~~Gv~~~GE 450 (541)
.-.|++|..+|...|..+|-.++.|
T Consensus 9 lRlP~~l~~~lk~~A~~~gRS~NsE 33 (50)
T PF03869_consen 9 LRLPEELKEKLKERAEENGRSMNSE 33 (50)
T ss_dssp EECEHHHHHHHHHHHHHTTS-HHHH
T ss_pred eECCHHHHHHHHHHHHHhCCChHHH
Confidence 4579999999999999999988776
No 279
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=20.60 E-value=3.5e+02 Score=27.50 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=36.6
Q ss_pred ccCCeec-CHHHHHHHHHHHH-HcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 88 MIGGKVK-RRKAMAQSFKALA-AAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 88 ~~~~~~~-~~~~~~~~L~~LK-~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
..+|... +.+...+-|+.+- ..+||-|-|..... .+-...+++++.+++.|.|| |+|+|
T Consensus 73 ~EGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE~~~~---------~~~~~~~~l~~~~~~~~~~v--I~S~H 133 (238)
T PRK13575 73 LQGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQAD---------IDIEKHQRLITHLQQYNKEV--VISHH 133 (238)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcccC---------CChHHHHHHHHHHHHcCCEE--EEecC
Confidence 3455433 3333333354443 45689888875431 02235778888999999887 99999
No 280
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.52 E-value=1.4e+02 Score=32.53 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeeccc----CCCcccccchHHHHHHHHHhCCCcEEEEEe
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVER----DRPGVYDWRGYFDLIVLASNCGLKVRALLA 155 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~----~~p~~YdWs~Y~~l~~mv~~~GLKv~~vms 155 (541)
.++.-|++||++|++.++..-===+.|. ..|.+-++.+..+..+.|.+.|++-...|-
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml 220 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATML 220 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeE
Confidence 4566699999999999887544334443 458999999999999999999999887776
No 281
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=20.37 E-value=3.2e+02 Score=26.35 Aligned_cols=49 Identities=31% Similarity=0.320 Sum_probs=36.7
Q ss_pred HHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 102 SFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 102 ~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+.+++|+.||++|+|=+-=| . .|.=..|.+-++-|+++||++=+..=++
T Consensus 17 dw~~vk~~Gi~faiikateG------~-~~~D~~~~~n~~~A~~aGl~vG~Yhf~~ 65 (192)
T cd06522 17 DYNKLKNYGVKAVIVKLTEG------T-TYRNPYAASQIANAKAAGLKVSAYHYAH 65 (192)
T ss_pred HHHHHHHcCCCEEEEEEcCC------C-CccChHHHHHHHHHHHCCCeeEEEEEEe
Confidence 66889999999999998422 2 2333567899999999999876555444
No 282
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=20.18 E-value=4.7e+02 Score=26.24 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCcceEEEeEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEE
Q 009162 98 AMAQSFKALAAAGVEGVVVEVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRAL 153 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~v 153 (541)
.+...+.+||+.++|.|-+..| .+ ....+++-+++.|++...+
T Consensus 184 d~~~~v~~l~~~~~d~i~~~~~---~~----------~~~~~~~~~~~~g~~~~~~ 226 (345)
T cd06338 184 DLSPLISKAKAAGPDAVVVAGH---FP----------DAVLLVRQMKELGYNPKAL 226 (345)
T ss_pred chHHHHHHHHhcCCCEEEECCc---ch----------hHHHHHHHHHHcCCCCCEE
Confidence 4556666666666666654332 00 2345556666677765444
No 283
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.17 E-value=8.4e+02 Score=25.11 Aligned_cols=106 Identities=22% Similarity=0.294 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCcceEEEeEEeee---ccc-CCCcccccchHHHHHHHHHhCCCcEEEEEee-ecCCCCCCCCCcCCCChh
Q 009162 100 AQSFKALAAAGVEGVVVEVWWGV---VER-DRPGVYDWRGYFDLIVLASNCGLKVRALLAF-HQCGSGPGDPKWVPLPQW 174 (541)
Q Consensus 100 ~~~L~~LK~~GVdGV~vdVWWGi---VE~-~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsF-HqCGGNVGD~~~IpLP~W 174 (541)
..++++..+.|++.|.+-+==.. ... ........+-..+.++.++++|+++++.++. ..|- |...++ |..
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~----~~~~~~-~~~ 150 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP----YEGEVP-PER 150 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC----CCCCCC-HHH
Confidence 34677788899998776653111 110 0112345566788899999999999887773 3332 222233 667
Q ss_pred hHhhhhc----CC-CceeeCCCCCccccceecccCcccccCCCCchHHHHHHHHHHHHHH
Q 009162 175 VLEEIDK----DP-DLAYSDRFGRRNMEYISLGCDILPVLRGRSPIQAYTDFMRNFRDTF 229 (541)
Q Consensus 175 V~~~g~~----~p-di~ytD~~G~rn~E~LSlg~D~~pv~~GRTpiq~Y~dfm~sF~~~f 229 (541)
+.+..+. -. .|.+.|-.|. -|| +...++.+.+++++
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~------------------~~P-~~v~~lv~~l~~~~ 191 (274)
T cd07938 151 VAEVAERLLDLGCDEISLGDTIGV------------------ATP-AQVRRLLEAVLERF 191 (274)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCc------------------cCH-HHHHHHHHHHHHHC
Confidence 6664321 11 2444454443 447 44556677777654
No 284
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.13 E-value=2.6e+02 Score=27.67 Aligned_cols=56 Identities=9% Similarity=-0.050 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeEEeeec-ccCCCcccccch----HHHHHHHHHhCCCcEEEEEeee
Q 009162 97 KAMAQSFKALAAAGVEGVVVEVWWGVV-ERDRPGVYDWRG----YFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 97 ~~~~~~L~~LK~~GVdGV~vdVWWGiV-E~~~p~~YdWs~----Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
+.+++-++..+.+|+..|.+ .||.. +...+.+ .|.. .+++.+++++.|+++ .+=.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~l--~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDILL--LIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCEE--EEEeC
Confidence 55788888899999998865 34432 1111122 1433 377788899999887 66543
No 285
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=20.12 E-value=2.9e+02 Score=28.66 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=47.8
Q ss_pred CeecCHHHHHHHHHHHHHcCcceEEEeEEeeecccCCCcc---cccchHHHHHHHHHhCCCcEEEEEeee
Q 009162 91 GKVKRRKAMAQSFKALAAAGVEGVVVEVWWGVVERDRPGV---YDWRGYFDLIVLASNCGLKVRALLAFH 157 (541)
Q Consensus 91 ~~~~~~~~~~~~L~~LK~~GVdGV~vdVWWGiVE~~~p~~---YdWs~Y~~l~~mv~~~GLKv~~vmsFH 157 (541)
|.+..++++..--+.+|++|+.-+.-..|= =+.+|.. ...++++.|.+.+++.||.+ +-..|
T Consensus 23 C~vEs~e~~~~~a~~~~~~g~~~~r~g~~k---pRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 23 CSIESYDHIRLAASSAKKLGYNYFRGGAYK---PRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred CccCCHHHHHHHHHHHHHcCCCEEEecccC---CCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 578899999888899999999999988884 1222222 23468999999999999999 55544
No 286
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.08 E-value=4.1e+02 Score=27.54 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=8.0
Q ss_pred HHHHHHHcCcceEEE
Q 009162 102 SFKALAAAGVEGVVV 116 (541)
Q Consensus 102 ~L~~LK~~GVdGV~v 116 (541)
.++.|+++|++.|.|
T Consensus 104 ~~~~L~~~gl~~v~I 118 (334)
T TIGR02666 104 HAKDLKEAGLKRVNV 118 (334)
T ss_pred HHHHHHHcCCCeEEE
Confidence 455555555555543
No 287
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=20.01 E-value=5e+02 Score=27.05 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCcceEEE-eEEeeecccCCCcccccchHHHHHHHHHhCCCcEEEEEeeecCCCCCCCCCcC--CCChh
Q 009162 98 AMAQSFKALAAAGVEGVVV-EVWWGVVERDRPGVYDWRGYFDLIVLASNCGLKVRALLAFHQCGSGPGDPKWV--PLPQW 174 (541)
Q Consensus 98 ~~~~~L~~LK~~GVdGV~v-dVWWGiVE~~~p~~YdWs~Y~~l~~mv~~~GLKv~~vmsFHqCGGNVGD~~~I--pLP~W 174 (541)
+.+.--+..++.|+.||-+ ..-++.-... +. |..+++.|.++|+-|+. |--.+-.+..-+- ..|.=
T Consensus 114 a~~E~er~v~~~gf~g~~l~p~~~~~~~~~-~~------~~pi~~~a~~~gvpv~i----htG~~~~~~~~~~~~~~p~~ 182 (293)
T COG2159 114 AAEELERRVRELGFVGVKLHPVAQGFYPDD-PR------LYPIYEAAEELGVPVVI----HTGAGPGGAGLEKGHSDPLY 182 (293)
T ss_pred HHHHHHHHHHhcCceEEEecccccCCCCCC-hH------HHHHHHHHHHcCCCEEE----EeCCCCCCcccccCCCCchH
Confidence 4444445556799999988 4436655533 22 89999999999999944 6422222222232 45666
Q ss_pred hHhhhhcCCCceee
Q 009162 175 VLEEIDKDPDLAYS 188 (541)
Q Consensus 175 V~~~g~~~pdi~yt 188 (541)
+.++.++.|++-+.
T Consensus 183 ~~~va~~fP~l~IV 196 (293)
T COG2159 183 LDDVARKFPELKIV 196 (293)
T ss_pred HHHHHHHCCCCcEE
Confidence 77777888886554
Done!