Query 009164
Match_columns 541
No_of_seqs 101 out of 135
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 20:15:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009164.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009164hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2awia1 a.35.1.11 (A:2-66) Prg 5.5 1E+02 0.0073 22.7 1.1 13 433-445 5-17 (65)
2 d1eeja2 d.17.3.1 (A:1-60) Disu 5.4 1.2E+02 0.0088 21.8 1.6 12 444-455 19-30 (60)
3 d1t3ba2 d.17.3.1 (A:2-60) Disu 5.2 64 0.0047 23.4 -0.1 12 444-455 18-29 (59)
4 d3b8ma1 d.58.60.1 (A:64-330) E 4.6 3.8E+02 0.028 23.5 4.9 36 408-443 147-182 (267)
5 d3b8pa1 d.58.60.1 (A:54-292) C 4.5 3E+02 0.022 24.1 4.1 36 408-443 117-152 (239)
6 d3b8oa1 d.58.60.1 (A:55-319) L 4.2 3.9E+02 0.029 23.6 4.7 36 408-443 144-179 (265)
7 d1l2pa_ f.23.21.1 (A:) F1F0 AT 3.9 6.7E+02 0.049 17.8 6.2 41 402-442 18-59 (61)
8 d2p02a3 d.130.1.1 (A:274-417) 3.8 1.3E+02 0.0092 25.5 0.7 18 38-55 122-139 (144)
9 d2ba0g2 d.101.1.1 (G:179-257) 3.6 1.6E+02 0.011 21.4 1.0 16 32-47 1-16 (79)
10 d2gysa3 b.1.2.1 (A:218-316) Co 2.8 1.2E+02 0.0089 24.4 -0.4 17 35-51 26-42 (99)
No 1
>d2awia1 a.35.1.11 (A:2-66) PrgX {Enterococcus faecalis [TaxId: 1351]}
Probab=5.47 E-value=1e+02 Score=22.75 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=10.7
Q ss_pred HHHHHHhhhcccc
Q 009164 433 TEIRKLRQTLCFK 445 (541)
Q Consensus 433 aeiKkLRksL~fK 445 (541)
.-+|++||+|||-
T Consensus 5 ~~lkqir~elnyh 17 (65)
T d2awia1 5 SVLKQIRQELNYH 17 (65)
T ss_dssp HHHHHHHHHTTCC
T ss_pred hHHHHHHHHhhhh
Confidence 4689999999974
No 2
>d1eeja2 d.17.3.1 (A:1-60) Disulfide bond isomerase, DsbC, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.35 E-value=1.2e+02 Score=21.82 Aligned_cols=12 Identities=8% Similarity=0.229 Sum_probs=9.6
Q ss_pred ccccCCCccccc
Q 009164 444 FKARPLPHFYKE 455 (541)
Q Consensus 444 fKA~PmP~Fy~~ 455 (541)
.+.+|+|+||.-
T Consensus 19 V~~spi~GlyeV 30 (60)
T d1eeja2 19 IQPAPVAGMKTV 30 (60)
T ss_dssp EEECSSTTEEEE
T ss_pred EecCCCCCeEEE
Confidence 467899999963
No 3
>d1t3ba2 d.17.3.1 (A:2-60) Disulfide bond isomerase, DsbC, N-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.25 E-value=64 Score=23.40 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=9.4
Q ss_pred ccccCCCccccc
Q 009164 444 FKARPLPHFYKE 455 (541)
Q Consensus 444 fKA~PmP~Fy~~ 455 (541)
...+|+|+||.-
T Consensus 18 i~~spi~GlyeV 29 (59)
T d1t3ba2 18 IKSSPISGIKTA 29 (59)
T ss_dssp CCBCSSTTEECC
T ss_pred EecCCCCCeEEE
Confidence 457899999964
No 4
>d3b8ma1 d.58.60.1 (A:64-330) Enterochelin transport protein FepE {Escherichia coli [TaxId: 562]}
Probab=4.58 E-value=3.8e+02 Score=23.51 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.1
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009164 408 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 443 (541)
Q Consensus 408 KLeEK~~AkE~Ek~~lqak~KEe~EaeiKkLRksL~ 443 (541)
.++.|.+..+.+...++.+.|+..+.+|.+|...|.
T Consensus 147 ~i~~~~~~l~~~~~~~~~~ak~~~~~~i~~l~~Al~ 182 (267)
T d3b8ma1 147 KLEIKTQFEKEKLAQDRIKMKNQLDANIQRLNYSLD 182 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999987654
No 5
>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB {Salmonella typhimurium [TaxId: 90371]}
Probab=4.52 E-value=3e+02 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.211 Sum_probs=32.5
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009164 408 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 443 (541)
Q Consensus 408 KLeEK~~AkE~Ek~~lqak~KEe~EaeiKkLRksL~ 443 (541)
.++.+.+..+.+...++...|...+.+|.+|...|.
T Consensus 117 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~l~~AL~ 152 (239)
T d3b8pa1 117 NITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALR 152 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999987654
No 6
>d3b8oa1 d.58.60.1 (A:55-319) Lipopolysaccharide biosynthesis protein WzzE {Escherichia coli [TaxId: 562]}
Probab=4.22 E-value=3.9e+02 Score=23.57 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=30.8
Q ss_pred HHHHHhhhHHHHHHhHHHHhhHHHHHHHHHHhhhcc
Q 009164 408 KLEEKFNANQIQKLQKQVTLKEKAETEIRKLRQTLC 443 (541)
Q Consensus 408 KLeEK~~AkE~Ek~~lqak~KEe~EaeiKkLRksL~ 443 (541)
.++.+.+..+.+...++...|...+.+|.+|...|.
T Consensus 144 ~i~~~~~~l~~~~~~~~~~ak~~~~~~I~~L~~AL~ 179 (265)
T d3b8oa1 144 AWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALK 179 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999987554
No 7
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=3.87 E-value=6.7e+02 Score=17.80 Aligned_cols=41 Identities=17% Similarity=0.320 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhhHH-HHHHhHHHHhhHHHHHHHHHHhhhc
Q 009164 402 AARRKEKLEEKFNANQ-IQKLQKQVTLKEKAETEIRKLRQTL 442 (541)
Q Consensus 402 AekRKEKLeEK~~AkE-~Ek~~lqak~KEe~EaeiKkLRksL 442 (541)
|.+|...+-+-.+..- .|..++=+.-+.+-|.|+.+.|.+|
T Consensus 18 A~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL 59 (61)
T d1l2pa_ 18 ANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444433333222 3555555556677777888777766
No 8
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=3.81 E-value=1.3e+02 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=15.1
Q ss_pred ceeeeccccccccccccc
Q 009164 38 QSVSFGRFMSESLAWEKW 55 (541)
Q Consensus 38 ~s~sfgrf~~~~l~w~~~ 55 (541)
..-.+|-|-.+.+.||+=
T Consensus 122 ~TAaYGHFGR~~f~WEk~ 139 (144)
T d2p02a3 122 RTAAYGHFGRDSFPWEVP 139 (144)
T ss_dssp GGSSSCSSSSTTCGGGSC
T ss_pred hccCccCCCCCCCCeecc
Confidence 567889999899999973
No 9
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.57 E-value=1.6e+02 Score=21.43 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=10.8
Q ss_pred ccccccceeeeccccc
Q 009164 32 PIHALGQSVSFGRFMS 47 (541)
Q Consensus 32 ~~~~l~~s~sfgrf~~ 47 (541)
|++-+-.+||||.|..
T Consensus 1 Pv~~~Pv~vT~~~~~~ 16 (79)
T d2ba0g2 1 PVRDLPVSVTSLIVGN 16 (79)
T ss_dssp CBCCCCEEEEEEEETT
T ss_pred CCCCceEEEEEEEECC
Confidence 4556667778877754
No 10
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.85 E-value=1.2e+02 Score=24.38 Aligned_cols=17 Identities=41% Similarity=0.544 Sum_probs=12.2
Q ss_pred cccceeeeccccccccc
Q 009164 35 ALGQSVSFGRFMSESLA 51 (541)
Q Consensus 35 ~l~~s~sfgrf~~~~l~ 51 (541)
.+..|||||-|-..+.+
T Consensus 26 ~Vt~SVsFgLfYk~~P~ 42 (99)
T d2gysa3 26 EVASSVSFGLFYKPSPD 42 (99)
T ss_dssp HHHTTCCEEEEEECC--
T ss_pred eEeeeEEEEEEeccCcc
Confidence 35689999999887663
Done!