Query 009165
Match_columns 541
No_of_seqs 345 out of 2148
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 21:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02518 pheophorbide a oxygen 100.0 5E-111 1E-115 911.1 49.5 535 1-541 1-539 (539)
2 PLN02281 chlorophyllide a oxyg 100.0 1.4E-53 2.9E-58 455.0 33.4 306 88-433 215-526 (536)
3 PLN00095 chlorophyllide a oxyg 100.0 2.3E-49 5E-54 406.1 23.7 284 85-388 64-371 (394)
4 COG4638 HcaE Phenylpropionate 100.0 3.7E-42 8.1E-47 362.9 20.4 320 80-434 14-357 (367)
5 TIGR03228 anthran_1_2_A anthra 100.0 1.3E-32 2.8E-37 293.2 10.2 187 77-268 22-218 (438)
6 cd04338 Rieske_RO_Alpha_Tic55 100.0 2E-31 4.4E-36 242.2 14.4 125 80-211 4-128 (134)
7 TIGR03229 benzo_1_2_benA benzo 100.0 6.4E-32 1.4E-36 288.1 9.9 189 75-267 20-219 (433)
8 cd03537 Rieske_RO_Alpha_PrnD T 100.0 5.9E-31 1.3E-35 235.1 13.0 116 92-211 2-117 (123)
9 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 1.6E-30 3.5E-35 237.4 14.4 124 84-211 8-132 (138)
10 cd03531 Rieske_RO_Alpha_KSH Th 100.0 2.6E-29 5.6E-34 222.6 13.2 110 93-212 1-110 (115)
11 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 2.7E-29 5.8E-34 226.8 13.0 116 84-211 8-123 (129)
12 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 6.1E-29 1.3E-33 228.7 13.7 121 84-211 12-133 (144)
13 cd03548 Rieske_RO_Alpha_OMO_CA 100.0 2.3E-28 5.1E-33 222.8 13.6 118 86-211 7-126 (136)
14 cd03532 Rieske_RO_Alpha_VanA_D 100.0 2E-28 4.4E-33 217.2 11.9 111 90-211 2-112 (116)
15 cd03545 Rieske_RO_Alpha_OHBDO_ 100.0 1.2E-28 2.5E-33 228.1 10.1 134 77-211 8-146 (150)
16 cd03539 Rieske_RO_Alpha_S5H Th 99.9 1.3E-27 2.8E-32 215.8 11.4 117 94-211 1-125 (129)
17 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 2.9E-27 6.2E-32 213.2 11.6 122 87-211 2-124 (128)
18 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 3.8E-27 8.3E-32 209.3 12.2 113 93-211 1-114 (118)
19 cd03469 Rieske_RO_Alpha_N Ries 99.9 1.5E-26 3.2E-31 205.4 11.2 113 94-211 1-114 (118)
20 cd03538 Rieske_RO_Alpha_AntDO 99.9 1.4E-26 3E-31 213.4 9.7 130 79-211 8-142 (146)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 9E-26 2E-30 202.3 11.6 117 92-211 1-119 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 1.3E-25 2.7E-30 201.3 11.4 116 94-211 1-117 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 1.4E-24 3.1E-29 186.3 12.2 96 94-206 1-97 (98)
24 cd03530 Rieske_NirD_small_Baci 99.9 2.7E-24 5.9E-29 184.9 12.1 97 94-207 1-98 (98)
25 cd03542 Rieske_RO_Alpha_HBDO R 99.9 3.8E-24 8.3E-29 191.5 11.9 116 94-211 1-119 (123)
26 cd03529 Rieske_NirD Assimilato 99.9 6.5E-24 1.4E-28 184.3 12.0 97 94-206 1-102 (103)
27 cd03474 Rieske_T4moC Toluene-4 99.9 1.5E-23 3.2E-28 183.5 12.9 101 94-211 1-102 (108)
28 TIGR02377 MocE_fam_FeS Rieske 99.9 1.9E-23 4.2E-28 180.8 12.3 100 93-208 1-101 (101)
29 TIGR02378 nirD_assim_sml nitri 99.9 2.5E-23 5.4E-28 181.3 11.5 99 93-208 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 9.7E-23 2.1E-27 177.9 11.9 101 93-210 2-103 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 1.2E-22 2.6E-27 173.7 10.9 92 97-205 3-95 (95)
32 PRK09511 nirD nitrite reductas 99.9 4.4E-21 9.6E-26 167.9 11.8 100 93-207 3-107 (108)
33 PF13806 Rieske_2: Rieske-like 99.9 4.6E-21 9.9E-26 166.6 11.5 99 93-207 1-104 (104)
34 PF00355 Rieske: Rieske [2Fe-2 99.8 6.8E-21 1.5E-25 163.1 10.6 94 93-202 1-97 (97)
35 COG2146 {NirD} Ferredoxin subu 99.8 6.4E-20 1.4E-24 159.9 12.4 103 92-209 3-106 (106)
36 cd03467 Rieske Rieske domain; 99.8 8.1E-20 1.8E-24 156.9 11.7 92 94-201 1-93 (98)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 2.6E-19 5.5E-24 152.0 9.9 88 97-201 2-89 (91)
38 cd08878 RHO_alpha_C_DMO-like C 99.8 4.9E-18 1.1E-22 161.5 13.6 175 239-433 5-196 (196)
39 cd03476 Rieske_ArOX_small Smal 99.7 1.5E-17 3.3E-22 149.3 10.9 97 95-207 4-114 (126)
40 PF08417 PaO: Pheophorbide a o 99.7 3.2E-17 7E-22 139.4 7.7 86 302-397 1-86 (92)
41 cd03471 Rieske_cytochrome_b6f 99.7 6.2E-16 1.3E-20 138.1 11.6 87 105-209 22-112 (126)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 2.7E-16 5.9E-21 135.4 8.5 71 100-173 14-88 (107)
43 TIGR02694 arsenite_ox_S arseni 99.6 1.3E-15 2.8E-20 137.2 10.8 95 95-205 7-114 (129)
44 cd03470 Rieske_cytochrome_bc1 99.5 2.9E-14 6.2E-19 128.1 10.8 93 99-206 5-125 (126)
45 cd00680 RHO_alpha_C C-terminal 99.5 1.2E-13 2.5E-18 130.5 10.8 165 238-433 3-187 (188)
46 PRK13474 cytochrome b6-f compl 99.4 6.6E-13 1.4E-17 126.3 11.7 87 104-208 73-163 (178)
47 cd08885 RHO_alpha_C_1 C-termin 99.3 1.4E-11 3E-16 118.1 11.5 164 238-432 4-188 (190)
48 cd08883 RHO_alpha_C_CMO-like C 99.3 3.5E-11 7.6E-16 114.2 13.5 161 238-433 4-174 (175)
49 TIGR01416 Rieske_proteo ubiqui 99.3 2.7E-11 5.8E-16 114.9 10.2 96 93-203 40-169 (174)
50 cd08886 RHO_alpha_C_2 C-termin 99.2 4.6E-11 9.9E-16 114.3 11.5 161 238-431 4-181 (182)
51 cd08887 RHO_alpha_C_3 C-termin 99.2 1.2E-10 2.6E-15 110.7 10.6 164 238-432 4-183 (185)
52 cd08884 RHO_alpha_C_GbcA-like 99.2 1.7E-10 3.8E-15 112.3 11.9 165 238-433 14-204 (205)
53 PF00848 Ring_hydroxyl_A: Ring 99.2 6.1E-11 1.3E-15 113.3 7.3 167 239-433 11-207 (209)
54 cd03475 Rieske_SoxF_SoxL SoxF 98.8 2.1E-08 4.5E-13 94.0 10.3 66 126-206 74-158 (171)
55 cd08882 RHO_alpha_C_MupW-like 98.5 7.8E-07 1.7E-11 89.1 11.0 107 300-433 129-242 (243)
56 cd08880 RHO_alpha_C_ahdA1c-lik 98.5 1.8E-06 3.8E-11 85.4 12.4 138 240-397 6-185 (222)
57 PF11723 Aromatic_hydrox: Homo 98.3 1.5E-05 3.3E-10 77.7 14.2 187 224-435 14-238 (240)
58 COG0723 QcrA Rieske Fe-S prote 98.1 1.1E-05 2.3E-10 77.0 7.6 64 128-206 100-164 (177)
59 cd08881 RHO_alpha_C_NDO-like C 97.6 0.00017 3.6E-09 70.5 7.6 29 239-267 10-39 (206)
60 KOG1671 Ubiquinol cytochrome c 97.6 8E-05 1.7E-09 70.6 4.6 74 100-175 92-191 (210)
61 cd08879 RHO_alpha_C_AntDO-like 97.6 0.00019 4.1E-09 71.6 7.5 29 239-267 5-33 (237)
62 TIGR03171 soxL2 Rieske iron-su 97.5 0.00019 4.1E-09 73.3 7.1 69 126-208 175-277 (321)
63 KOG1336 Monodehydroascorbate/f 95.4 0.0088 1.9E-07 64.4 2.3 39 138-177 1-40 (478)
64 PF14015 DUF4231: Protein of u 73.9 9.2 0.0002 33.0 6.0 32 460-491 2-33 (112)
65 PF13490 zf-HC2: Putative zinc 71.6 2.8 6E-05 28.7 1.7 16 459-474 21-36 (36)
66 TIGR02949 anti_SigH_actin anti 66.2 9 0.00019 31.9 4.0 28 459-486 29-56 (84)
67 PF07627 PSCyt3: Protein of un 62.7 11 0.00023 32.8 3.9 51 426-476 27-79 (101)
68 PRK10853 putative reductase; P 61.9 5.3 0.00011 35.5 2.0 17 465-481 6-22 (118)
69 cd03033 ArsC_15kD Arsenate Red 58.8 6.1 0.00013 34.8 1.8 17 465-481 6-22 (113)
70 PF09740 DUF2043: Uncharacteri 58.7 5.6 0.00012 34.9 1.5 35 127-164 63-98 (110)
71 cd03034 ArsC_ArsC Arsenate Red 58.6 6.2 0.00013 34.5 1.8 18 465-482 5-22 (112)
72 PF03960 ArsC: ArsC family; I 56.7 6.7 0.00015 34.0 1.7 18 465-482 2-19 (110)
73 COG1393 ArsC Arsenate reductas 56.1 7.4 0.00016 34.6 1.9 18 465-482 7-24 (117)
74 PRK10026 arsenate reductase; P 54.6 7.8 0.00017 35.6 1.8 17 465-481 8-24 (141)
75 cd03035 ArsC_Yffb Arsenate Red 53.9 8.4 0.00018 33.4 1.9 17 465-481 5-21 (105)
76 COG1645 Uncharacterized Zn-fin 52.1 8.7 0.00019 34.8 1.6 30 132-165 27-56 (131)
77 TIGR00014 arsC arsenate reduct 51.3 9.5 0.00021 33.5 1.8 18 465-482 5-22 (114)
78 PRK13344 spxA transcriptional 49.5 11 0.00024 34.1 1.9 17 465-481 6-22 (132)
79 cd03036 ArsC_like Arsenate Red 46.5 13 0.00028 32.5 1.8 17 465-481 5-21 (111)
80 TIGR01616 nitro_assoc nitrogen 44.5 14 0.00031 33.2 1.8 17 465-481 7-23 (126)
81 PRK12559 transcriptional regul 40.1 18 0.00039 32.7 1.9 18 465-482 6-23 (131)
82 cd03032 ArsC_Spx Arsenate Redu 38.9 20 0.00043 31.4 1.9 18 465-482 6-23 (115)
83 PRK01655 spxA transcriptional 36.3 23 0.00049 32.0 1.9 18 465-482 6-23 (131)
84 cd02977 ArsC_family Arsenate R 36.3 23 0.0005 30.2 1.8 18 465-482 5-22 (105)
85 TIGR01617 arsC_related transcr 35.4 24 0.00053 30.9 1.9 18 465-482 5-22 (117)
86 COG5660 Predicted integral mem 31.6 52 0.0011 32.2 3.5 18 465-482 30-47 (238)
87 PF11572 DUF3234: Protein of u 29.4 14 0.0003 31.3 -0.6 51 89-144 4-54 (103)
88 PRK00420 hypothetical protein; 28.9 42 0.00091 29.7 2.2 31 132-165 22-52 (112)
89 PF10080 DUF2318: Predicted me 28.2 2.6E+02 0.0056 24.3 6.9 59 103-165 2-64 (102)
90 cd03027 GRX_DEP Glutaredoxin ( 26.6 44 0.00096 26.2 1.8 17 466-482 8-24 (73)
91 KOG4684 Uncharacterized conser 24.7 14 0.00029 36.1 -1.7 15 461-475 95-109 (275)
92 PF14015 DUF4231: Protein of u 21.6 5E+02 0.011 21.9 8.4 36 457-492 2-37 (112)
93 PF02037 SAP: SAP domain; Int 21.4 1.8E+02 0.0039 19.8 3.8 30 421-465 5-34 (35)
94 PF06677 Auto_anti-p27: Sjogre 20.2 68 0.0015 23.1 1.5 29 129-160 13-41 (41)
No 1
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=5e-111 Score=911.06 Aligned_cols=535 Identities=80% Similarity=1.328 Sum_probs=446.7
Q ss_pred Ccccccccc---ccccCCCCcccccccCCCCcccccccccccCCCCCcccccCCCCCCCCCchhhccccccccCCCCCCC
Q 009165 1 MALLLSTTA---NITTSPRKTLPFLATGTPKRQITVKSLQKRSKNLSPLRVAAPPSDPAASDEETMRKDEKEDYGSLVDD 77 (541)
Q Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (541)
||++++++. +.|.+..+.++|+.+-+ +++.++...+.|++..++.+++++++.+..+. .+..+.++.++ +.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~ 74 (539)
T PLN02518 1 MAVLLGIACNSLTLTSSTPKSTPFFIPAR-TIPFVSSSRPRRGKIFTPLRVAAPPSVPSEAA--LQQDEGEEQRV---EQ 74 (539)
T ss_pred CceeeeccccchhhccCCCCCcceeeecc-eeccccccccccccccccceecCCCCCCcccc--ccCCccccccc---cc
Confidence 666655444 56666777788777633 55666666566666778888888877554322 11111111222 12
Q ss_pred CCCcccCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcc
Q 009165 78 EYGKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCS 157 (541)
Q Consensus 78 ~~~~~~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~Cp 157 (541)
+.+....+.+|+|+++||+||.++||++|+++.++++|++|||||++.+|+++||+|+||||+++||+|+++++|.|+||
T Consensus 75 ~~~~~~~~~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~Cp 154 (539)
T PLN02518 75 ELGQESSDSKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCS 154 (539)
T ss_pred cccccccchhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcC
Confidence 23445678899999999999999999989999999999999999974489999999999999999999999657899999
Q ss_pred cCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceee
Q 009165 158 YHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVT 237 (541)
Q Consensus 158 yHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~ 237 (541)
||||+||++|+|+.||+.+..++..++..++++|+++|||+|++|+||||+++++.+.++...+|.+++++++++|....
T Consensus 155 YHGW~Fd~~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~~ 234 (539)
T PLN02518 155 YHGWSFDGCGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTVT 234 (539)
T ss_pred CCCCEEcCCCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeEE
Confidence 99999999999999998654443333334678899999999999999999987643444556777776678888888777
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeeccCCCCceeEEEecceeeeEEEEEccc
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDTK 317 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~~~~~~~~~~~f~~P~~~~~~~~~~~~ 317 (541)
..++++|+|++++||++|++|++|+|++++|+++++.+.+++++..+.+||.+.+........+|.+||++++.+.+..+
T Consensus 235 ~~~~~~~~~~~l~EN~lD~sH~pfvH~~~~G~~~~~~~~~~~v~~~~~~Gf~g~~~~~~~~~~~F~~P~~~~~~~~~~~~ 314 (539)
T PLN02518 235 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKVESSGPWGFAGANSDNPRITAKFVAPCYYINKIEIDTK 314 (539)
T ss_pred EEEEEecCchhHHHhCCccchhceeccccccCccccccccceEEEcCCCcccccccCCCceEEEEECCeEEEEeeeeecc
Confidence 78899999999999999999999999999999999888889988877788876544444456889999998887766444
Q ss_pred CcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhc
Q 009165 318 LPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKL 397 (541)
Q Consensus 318 ~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~ 397 (541)
.+..++..+.+++++++||+++|+||+||+++|||+.+..+.+.|++++|+|+.|+.+|+|||||+++||.||+.++..+
T Consensus 315 ~~~~~~~~~~~~~~~~~tP~s~g~tr~f~~~~Rnf~~~~~~~~~~~k~~PrW~~h~~~n~Vl~~D~~~lh~Qe~~~~~~~ 394 (539)
T PLN02518 315 LPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNFFQFSMPGPAWWQLVPRWYEHWTSNKVYDGDMIVLQGQEKIFLSKS 394 (539)
T ss_pred ccCCCCcceEEEEEEEEEECCCCeEEEEEEecccchhccccchhhhhcCchHHHHhhhccchHhHHHHHHHHHHHHhhcc
Confidence 43335555667888999999999999999999999988888788889999999999999999999999999999998877
Q ss_pred ccCCccccccccccccccccccHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCcccchhHHhHHHHhhhcCChhhHHHH
Q 009165 398 MEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQPEWFGFSS-QQPSPSTVLSKCQMLDRFEQHTLKCSSCREAY 476 (541)
Q Consensus 398 ~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~g~p~w~~~~~-~~~lP~~~~~~e~lldRy~~HT~~C~sC~~Al 476 (541)
.+.+.+++++|++.||+|+++|++|++|||||+++|+|+++|++.++ .++||++.++||||||||||||+||+||++||
T Consensus 395 ~e~~~~v~~~w~k~~~~Pt~aD~~viayR~Wl~~~g~g~~~w~~~~~~~~~lp~~~~~~~~lldRy~~Ht~~C~SC~~Al 474 (539)
T PLN02518 395 GEGSADVNAQYTKLTFTPTQADRFVLAFRNWLRRHGNSQPEWFGETSSQQPLPSTVLSKRQMLDRFEQHTLNCSSCKGAY 474 (539)
T ss_pred ccccccchhhhhhhccCCCchhHHHHHHHHHHHHhCcCCCCcccCCcccCCCCCCCCCHHHHhHHHHhhCccChhHHHHH
Confidence 65556788999999999999999999999999999999999998653 45688877799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCcEEEecccccCC
Q 009165 477 SAFQTGQKFLIGATVAFCATAGIPSDLQSRIVLAGLALVSAALAYALHELQKNFVFVDYVHAEID 541 (541)
Q Consensus 477 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~l~~~~~~F~~~dy~ha~~~ 541 (541)
|+|+++|++++++++++++++++++.+.+.++++++++++++++|+|++|+++|||+||+||++|
T Consensus 475 k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~ 539 (539)
T PLN02518 475 KAFQTLQKVLIGATVVFAATAGIPSDVQLRLILAGLALISAASAYALKELEKNFVFVDYVHAEID 539 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhhceecCccCccCC
Confidence 99999999999999999888888888777788888888899999999999999999999999986
No 2
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=1.4e-53 Score=454.98 Aligned_cols=306 Identities=23% Similarity=0.445 Sum_probs=232.0
Q ss_pred ccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCC
Q 009165 88 FSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCG 167 (541)
Q Consensus 88 ~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G 167 (541)
+.|++.||+|+.++||++|+++.++++|++|||||+ .+|+++||+|+|||||++|++|+++ ++.|+||||||+||.+|
T Consensus 215 ~~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~-~dG~v~A~~D~CPHRgaPLs~G~v~-g~~L~CPYHGW~FD~dG 292 (536)
T PLN02281 215 PHLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRG-EDGKPGCVRNTCAHRACPLDLGTVN-EGRIQCPYHGWEYSTDG 292 (536)
T ss_pred hhhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEEC-CCCeEEEEeCcCcCCCCccccceee-CCEEEeCCCCCEECCCC
Confidence 378999999999999998999999999999999998 7999999999999999999999997 68999999999999999
Q ss_pred CccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCC-Cccee-eEEEEeecc
Q 009165 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKP-EFSSV-TIQRDLFYG 245 (541)
Q Consensus 168 ~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~-~~~~~-~~~~d~~~~ 245 (541)
+|+.+|+.. +.+.++++|||+|++|+||||++++. ++|.+| +++++ +|... ...+++++|
T Consensus 293 ~cv~iP~~~----------~~~~~l~sYPV~e~~GlVwV~lgd~~-------~aP~~p-~ld~p~~~~~~~~~~~~~~~n 354 (536)
T PLN02281 293 ECKKMPSTK----------LLKVKIKSLPCLEQEGMIWIWPGDEP-------PAPILP-SLQPPSGFLIHAELVMDLPVE 354 (536)
T ss_pred CEeeCCCCc----------cccCCcceEeEEEECCEEEEEeCCCC-------CCCCCc-cccCcccceEEEEEEEEecCC
Confidence 999999753 23578999999999999999998642 124555 66665 55443 346899999
Q ss_pred hhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeeccCCCCceeEEEecceeeeEEEEEcc-cCc-ccCC
Q 009165 246 YDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKFVAPCYYMNKIEIDT-KLP-VVGD 323 (541)
Q Consensus 246 ~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~~~~~~~~~~~f~~P~~~~~~~~~~~-~~p-~~g~ 323 (541)
|++++||++|++|++|+|++++|..... +...+.. ....++.+..... ...++|.+||++...+.+.. +.. ..++
T Consensus 355 wkllvENllD~~H~~fvH~~t~g~~~~~-p~~v~~~-~~~~~~~p~~~~~-pv~~~f~aP~~v~l~i~~~~~G~~~~~~~ 431 (536)
T PLN02281 355 HGLLLDNLLDLAHAPFTHTSTFAKGWSV-PSLVKFL-TPTSGLQGYWDPY-PIDMEFKPPCIVLSTIGISKPGKLEGKST 431 (536)
T ss_pred HHHHHHhccccccccccCcccccCcccC-CceeEEe-cccCCCCcccccC-CceEEEECcEEEEEeeccccCCccccccc
Confidence 9999999999999999999999975332 2222222 1112222222111 23589999999987765421 110 0001
Q ss_pred --CcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhcccCC
Q 009165 324 --QKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGS 401 (541)
Q Consensus 324 --~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~ 401 (541)
.....+.++++||+++++||+||.+.|||... ..+. .+...|+.+ +.+.+|+||+.+||.||+.+....
T Consensus 432 ~~~~~~~~~~h~~TPeT~~sTryF~~~~Rnf~~~-~~d~---~~~~~~l~~-~~~~vF~ED~~iLEaQQ~~i~~~~---- 502 (536)
T PLN02281 432 QQCATHLHQLHVCLPSSKNKTRLLYRMSLDFAPI-LKNL---PFMEHLWRH-FAEQVLNEDLRLVLGQQERMLNGA---- 502 (536)
T ss_pred cccccceEEEEEEEECCCCeEEEEEEecccCccc-cccc---cchHHHHHH-HhhHhhHhHHHHHHHHHHHhhccc----
Confidence 12234567778999999999999999998431 0011 122343333 366899999999999999886521
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 402 EDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 402 ~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
+.+++|+++|+++++|||||+++.
T Consensus 503 --------~~~~l~l~aD~~~v~~RRWl~~~~ 526 (536)
T PLN02281 503 --------NIWNLPVAYDKLGVRYRLWRNAVD 526 (536)
T ss_pred --------ccccccchhhHHHHHHHHHHHHhh
Confidence 345789999999999999999874
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=2.3e-49 Score=406.06 Aligned_cols=284 Identities=23% Similarity=0.400 Sum_probs=214.5
Q ss_pred cccccccCCceEeeecCCC-CCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEE
Q 009165 85 DSKFSWRDHWYPVSLVEDL-DPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSF 163 (541)
Q Consensus 85 e~~~~~~~~W~pv~~~~dL-~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~F 163 (541)
......+++||+|++++|| ++|+++.++++|++|||||+ .+|+++||+|+||||+++|++|+++ ++.|+||||||+|
T Consensus 64 ~~~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd-~dGqv~Af~N~CPHRGapLSeG~v~-~g~L~CPYHGW~F 141 (394)
T PLN00095 64 GATADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRD-ADGEAGCIKDECAHRACPLSLGKLV-DGKAQCPYHGWEY 141 (394)
T ss_pred CCCCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEEC-CCCCEEEEeccCCCCCCccccCccc-CCEEEecCCCcEE
Confidence 3445568999999999999 68999999999999999999 7999999999999999999999996 7899999999999
Q ss_pred cCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccc---------------cccCCCCCCCCCC
Q 009165 164 DGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQER---------------ANATKPPMLPDAF 228 (541)
Q Consensus 164 d~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~---------------~~~~~~p~~p~~~ 228 (541)
|.+|+|+.+|+.... .+..++++|||++++|+||||+++...+. .+...|+.++ +.
T Consensus 142 D~~G~C~~iP~~~~~--------~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~-~~ 212 (394)
T PLN00095 142 ETGGECAKMPSCKKF--------LKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFA-PG 212 (394)
T ss_pred CCCCCEeeCCCcccc--------ccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccC-CC
Confidence 999999999986431 23568999999999999999998632110 0012233344 22
Q ss_pred CCCCcceee-EEEEeecchhhHhhhcCCCCcc-cccc----cccccCcCCCCCccEEEEecCccceeeccCCCCceeEEE
Q 009165 229 DKPEFSSVT-IQRDLFYGYDTLMENVSDPSHI-DFAH----HKVTGRRDRAKPLPFKLESSGHWGFAGANDGNPRISAKF 302 (541)
Q Consensus 229 ~~~~~~~~~-~~~d~~~~~~~~~EN~lD~~H~-~~~H----~~~~g~~~~~~~~~~~v~~~~~~gf~~~~~~~~~~~~~f 302 (541)
.+|.... ..+|++|+|.++|||+||++|+ +|+| +.+.++|.++.+++.++......++.+.++. ..+..+|
T Consensus 213 --~gf~~~aev~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~-~p~~~~F 289 (394)
T PLN00095 213 --EGFTPMAEVIADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDA-VPQSATF 289 (394)
T ss_pred --CCceEEEEEEEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeeccc-CCcceeE
Confidence 3566643 3689999999999999999996 5555 5566788877777666655556677777654 4467889
Q ss_pred ecceeeeEEEEEcccCcccCC-CcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhh-hccccccccc
Q 009165 303 VAPCYYMNKIEIDTKLPVVGD-QKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWH-EHWTSNKVYD 380 (541)
Q Consensus 303 ~~P~~~~~~~~~~~~~p~~g~-~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~-~H~~~~~Vld 380 (541)
.+||++.++|.+..+ |-.+. ..+++..++|++|.+||+||++++++++|.. -+.|.+.+|.-+ .| +.++||.
T Consensus 290 ~ppc~~~s~i~l~~~-~g~~~~~~~~l~qlhvclP~~~G~tRll~R~~~dF~~----~~~~~~~~~~~~w~~-~a~~vl~ 363 (394)
T PLN00095 290 KPACVIASTIALEDG-PGGGDGTDMNVEQLHVCLPAKPGLCRLLFRLAFDFVA----VPEGAQAAAGDVWAN-LAMMVLK 363 (394)
T ss_pred cCceeeeeeeccccc-CCCCccccceeeeEEEEEecCCCceEEEEeecccccc----cHHHhHhchHHHHHH-HHHHHHH
Confidence 999999999887421 21111 1346667788899999999999999999832 122334444211 12 3678999
Q ss_pred hhHHHHHh
Q 009165 381 GDMIVLQG 388 (541)
Q Consensus 381 qD~~iL~~ 388 (541)
||+.++.+
T Consensus 364 e~l~~v~~ 371 (394)
T PLN00095 364 EELEDVRA 371 (394)
T ss_pred HHHHHHhc
Confidence 99877764
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=3.7e-42 Score=362.89 Aligned_cols=320 Identities=24% Similarity=0.365 Sum_probs=217.4
Q ss_pred CcccCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccC
Q 009165 80 GKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYH 159 (541)
Q Consensus 80 ~~~~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyH 159 (541)
+..+.+.+.+|.++||+||+++||+++++++++++|++|||||+ ++|+|+||+|.||||||+||+|++.+.+.|+||||
T Consensus 14 ~~~~~~~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~-~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyH 92 (367)
T COG4638 14 ELFQLELERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRD-KDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYH 92 (367)
T ss_pred HHHHHHHHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEEC-CCCCEEEEeccCCCCCchhccccCCCCceEecCCC
Confidence 44567788888889999999999997799999999999999999 89999999999999999999999985489999999
Q ss_pred ceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEE
Q 009165 160 GWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQ 239 (541)
Q Consensus 160 GW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 239 (541)
||+||.+|+|+.||+....... ++++.++++|||++++|+||||+++++.+ .+...+|..+.+.++.........
T Consensus 93 gW~y~~~G~~~~ip~~~~~~~~----~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~ 167 (367)
T COG4638 93 GWTYDLDGRLRGVPARGYPLDF----DKSEHGLKRYPVEERYGFIWIWLGDPPPA-AEAFLPPAEPYEDDRSRLGGGSFT 167 (367)
T ss_pred ceEECCCCcEecCCccccCCCC----CHhhCCccccceEEEccEEEEecCCCccC-hhHhcccccccccccccccCceEE
Confidence 9999999999999953211111 12346789999999999999999987533 233444444422222222223456
Q ss_pred EEeecchhhHhhhcCC-CCcccccccccccCcCCCCCccEEEEecCcc---------------------ceeeccC-CCC
Q 009165 240 RDLFYGYDTLMENVSD-PSHIDFAHHKVTGRRDRAKPLPFKLESSGHW---------------------GFAGAND-GNP 296 (541)
Q Consensus 240 ~d~~~~~~~~~EN~lD-~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~---------------------gf~~~~~-~~~ 296 (541)
.++++||++++||++| ++|++++|+++.|.........+.+.....+ ++.+... ...
T Consensus 168 ~~~~~nwk~~vEn~~d~~~H~~~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~ 247 (367)
T COG4638 168 INVPGNWKLAVENNLDDPYHVPFVHPGLLGTEPHTEVGAYDVTAGGHWDVILATGNPFFQPLGSEASSYGFDGNYEVHVP 247 (367)
T ss_pred EEecccceEEeeccCCccccccccCHHHhcccccccccccccccCCceeeeeccCCCccCCcchhhhccccccccccccC
Confidence 7889999999998888 9999999999987654322111111111000 1111100 012
Q ss_pred ceeEEEeccee-eeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcccc
Q 009165 297 RISAKFVAPCY-YMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTS 375 (541)
Q Consensus 297 ~~~~~f~~P~~-~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~ 375 (541)
.....|..|+. ..+.. +.. ..++..+.|+++++|.+......... .....+....++.| +.
T Consensus 248 ~~~~~~~~p~~~~~~~~---------~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~ 309 (367)
T COG4638 248 GAYLLFLYPNSTVWNHV---------TVD---DVIVFFVQPIDEDETMVTLVWLVLPD-----LVEGVDYFDKLIRR-FR 309 (367)
T ss_pred ceeEEEEcCCchheeee---------ccc---ceeEEEEEecCCceeEEEeeeeeccc-----hhhHHHHHHHHHHH-Hh
Confidence 23456666752 22211 111 23455679999999999763211110 00011222233332 34
Q ss_pred ccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcC
Q 009165 376 NKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGN 434 (541)
Q Consensus 376 ~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~ 434 (541)
+.+++||..|+|.|++...+...+ .+ ..+...|...+++++|+.+...
T Consensus 310 ~~~~~qD~~i~e~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~ 357 (367)
T COG4638 310 QEILDQDREILENQQPGRLSPALE----------RG-PYPIREDAGSVQFRRWLAERLV 357 (367)
T ss_pred ccCcHHHHHHHHHHhccccccccc----------CC-CccccccchhhHHHHHHHHHHh
Confidence 569999999999999966554321 11 2456789999999999987754
No 5
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.97 E-value=1.3e-32 Score=293.21 Aligned_cols=187 Identities=14% Similarity=0.199 Sum_probs=144.5
Q ss_pred CCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccc-cccCCCCeE
Q 009165 77 DEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE-GRIDENGHL 154 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~-G~v~~~g~l 154 (541)
+.++..+.|.+.+|.+.|++||++++|+ +|+++++++++++|||+|+ ++|+++||.|+|||||++|+. ++.. ...+
T Consensus 22 td~~if~~E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~-~dG~i~a~~N~C~HRGa~L~~~~~Gn-~~~~ 99 (438)
T TIGR03228 22 TEPELFDLEMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRD-GKGELHALVNACQHRGATLTRVGKGN-QSTF 99 (438)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcccCCCCCCccccCCccc-cCEE
Confidence 3446778899999999999999999998 6999999999999999999 899999999999999999997 5554 5689
Q ss_pred EcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCC--CCC-C--
Q 009165 155 QCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLP--DAF-D-- 229 (541)
Q Consensus 155 ~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p--~~~-~-- 229 (541)
+||||||+||.+|+|+.||......+ ..+.....|+.++|.+.+|+|||++++++.+..++...+... +.+ +
T Consensus 100 ~CPYHgW~y~~dG~L~~vp~~~~y~~---~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~~l~e~lg~~~~~ld~~~~~~ 176 (438)
T TIGR03228 100 TCPFHAWCYKSDGRLVKVKAPGEYCE---GFDKATRGLKKARIASYRGFVFVSLDVAATDSLEDFLGDARVFLDMMVAQS 176 (438)
T ss_pred EcCCCCCcccCCCceeecCcccccCC---CCChhhCCCcceeEEEECCEEEEEeCCCCCCCHHHHhhhHHHHHHHHhhcc
Confidence 99999999999999999996432211 122345678889999999999999987642222222221100 011 1
Q ss_pred -CCCcceee--EEEEeecchhhHhhhcCCCCccccccccccc
Q 009165 230 -KPEFSSVT--IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG 268 (541)
Q Consensus 230 -~~~~~~~~--~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g 268 (541)
..++..+. ..+++++|||+.+||++|+||++++|..+++
T Consensus 177 ~~g~le~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 177 PTGELEVLPGKSAYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred CcCceEEecceEEEEeCCchHHHHHhccccccchhhChhhHh
Confidence 11233332 3468999999999999999999999988653
No 6
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.97 E-value=2e-31 Score=242.22 Aligned_cols=125 Identities=34% Similarity=0.841 Sum_probs=110.6
Q ss_pred CcccCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccC
Q 009165 80 GKESSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYH 159 (541)
Q Consensus 80 ~~~~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyH 159 (541)
+..+...+++|++.|++|+.++||+++..+.++++|++|+|||+ .+|+++||+|+|||||++|+.|.++ ++.|+||||
T Consensus 4 ~~~~~~~~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~-~~G~v~A~~n~CpHrga~L~~G~~~-~~~i~CP~H 81 (134)
T cd04338 4 ETPENVAEYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRD-QNGQLRCLEDRCPHRLAKLSEGQLI-DGKLECLYH 81 (134)
T ss_pred ccCCcccccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEc-CCCCEEEEcCcCCCCcCcccCCeec-CCEEEccCC
Confidence 33456678999999999999999998889999999999999998 7999999999999999999999986 689999999
Q ss_pred ceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 160 GWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 160 GW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
||+||.+|+|+.+|+.+.... .+.+.+|++|||++++|+|||++++.
T Consensus 82 gw~Fd~~G~~~~~P~~~~~~~-----~~~~~~l~~y~v~~~~G~V~V~~~~~ 128 (134)
T cd04338 82 GWQFGGEGKCVKIPQLPADAK-----IPKNACVKSYEVRDSQGVVWMWMSEA 128 (134)
T ss_pred CCEECCCCCEEECCCCCccCC-----CCcccCcceEeEEEECCEEEEEcCCC
Confidence 999999999999998653211 13456799999999999999999864
No 7
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.97 E-value=6.4e-32 Score=288.06 Aligned_cols=189 Identities=14% Similarity=0.191 Sum_probs=145.4
Q ss_pred CCCCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCe
Q 009165 75 VDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGH 153 (541)
Q Consensus 75 ~~~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~ 153 (541)
+=+.++..+.|.+.+|.+.|+.||+++||+ +|++.++.+.|++|||+|+ ++|+++||.|+|||||++|+.|...+.+.
T Consensus 20 ~Ytd~~~f~~E~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~-~dG~i~af~N~C~HRga~L~~~~~g~~~~ 98 (433)
T TIGR03229 20 MFTDPELFDLEMKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARN-KDGELNAFINACSHRGAMLCRHKRGNKTT 98 (433)
T ss_pred hcCCHHHHHHHHHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCcEEEEeCcCCCCCCCcccccccCCCE
Confidence 334557778899999999999999999998 7889999999999999999 89999999999999999999987655679
Q ss_pred EEcccCceEEcCCCCccccCCCCCCCchhhccCC-CCCCceeEE-EEEEcCeEEEecCCCcccccccCCCCCCCCCCC--
Q 009165 154 LQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQS-PRACATRFP-TMVSQGLLFVWPDEYGQERANATKPPMLPDAFD-- 229 (541)
Q Consensus 154 l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~-~~~~l~~~p-v~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~-- 229 (541)
|+||||||+||.+|+|+.+|.....+-. ...+. ...+|..++ +...+|+|||++++++. +.++...+. .+.++
T Consensus 99 ~~CPyHgW~f~~~G~l~~vP~~~~~~~~-~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~-~l~e~Lg~~-~~~ld~~ 175 (433)
T TIGR03229 99 YTCPFHGWTFNNSGKLLKVKDPEDAGYP-ECFNKDGSHDLKKVARFESYRGFLFGSLNPDVL-PLEEHLGET-AKIIDMI 175 (433)
T ss_pred EEcCCCCCEecCCcceEeCCCcccccCc-cccCcHhhcCCccceEEEEECCEEEEEcCCCCC-CHHHHhhhH-HHHHHHH
Confidence 9999999999999999999974322111 01111 245799996 66679999999997643 223332221 11111
Q ss_pred -C---CCccee--eEEEEeecchhhHhhhcCCCCcccccccccc
Q 009165 230 -K---PEFSSV--TIQRDLFYGYDTLMENVSDPSHIDFAHHKVT 267 (541)
Q Consensus 230 -~---~~~~~~--~~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~ 267 (541)
+ .++..+ ...+++++|||+++||++|+||++++|.++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~ 219 (433)
T TIGR03229 176 VDQSPDGLEVLRGSSTYTYEGNWKLQAENGADGYHVSAVHWNYA 219 (433)
T ss_pred hhcCcCCCeEEeeeEEEEecCchhhhHHhccCcccchhhcccHH
Confidence 1 223333 2357889999999999999999999998865
No 8
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.97 E-value=5.9e-31 Score=235.12 Aligned_cols=116 Identities=29% Similarity=0.610 Sum_probs=101.4
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTR 171 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~ 171 (541)
..||+|+.++||+ +++..++++|++|||||+ .+|+++|++|+||||+++|+.|+++ ++.|+||||||+||.+|+|+.
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~-~~g~v~a~~n~CpHrg~~Ls~G~v~-~~~l~CpyHGw~Fd~~G~~~~ 78 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRG-ATGRAVVMDRHCSHLGANLADGRVK-DGCIQCPFHHWRYDEQGQCVH 78 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEc-cCCEEEEEcCCCCCCCCCccCCEEe-CCEEECCCCCCEECCCCCEEE
Confidence 5799999999996 789999999999999998 7899999999999999999999997 689999999999999999999
Q ss_pred cCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
||+.+...+... ..+++.++++|||+|++|+||||++++
T Consensus 79 iP~~~~~~~~~~-~~p~~~~~~~~pv~e~~G~Vwv~~g~~ 117 (123)
T cd03537 79 IPGHSTAVRRLE-PVPRGARQPTLVTAERYGYVWVWYGSP 117 (123)
T ss_pred CCCCcccccccc-cCCcccccccEeEEEECCEEEEEcCCC
Confidence 998654211100 023567899999999999999999864
No 9
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.97 E-value=1.6e-30 Score=237.39 Aligned_cols=124 Identities=69% Similarity=1.351 Sum_probs=109.9
Q ss_pred CcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCC-CCeEEEEccCCCCCCCCccccccCCCCeEEcccCceE
Q 009165 84 SDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN-SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWS 162 (541)
Q Consensus 84 ~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~-~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~ 162 (541)
...++.|++.|++|+.++||++|+++.++++|++|+|||+ . +|+++||+|+|||||++|+.|.+.+++.|+||||||+
T Consensus 8 ~~~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~ 86 (138)
T cd03480 8 DSDKFDWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWD-RNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWS 86 (138)
T ss_pred ccccCCCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEE-CCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCE
Confidence 3457889999999999999999999999999999999998 5 8999999999999999999999865679999999999
Q ss_pred EcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 163 FDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 163 Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
||.+|+|+.+|.....+. ...+.+.++++|||++++|+|||+++++
T Consensus 87 Fd~tG~~~~~P~~~~~g~---~~~~~~~~l~~ypv~v~~g~V~V~~~~~ 132 (138)
T cd03480 87 FDGSGSCQRIPQAAEGGK---AHTSPRACVASLPTAVRQGLLFVWPGEP 132 (138)
T ss_pred ECCCCCEEECCCCccccc---cCCCcccccceEeEEEECCEEEEecCCh
Confidence 999999999998654331 1234567899999999999999999865
No 10
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=2.6e-29 Score=222.56 Aligned_cols=110 Identities=31% Similarity=0.661 Sum_probs=101.1
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcccc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~i 172 (541)
.||+|+.++||++|+++.++++|++|+|||+ .+|+++|++|+|||||++|++|.++ ++.|+||||||+||.+|+|+.+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~-~~g~~~a~~n~CpH~ga~L~~G~~~-~~~i~CP~Hg~~fd~~G~~~~~ 78 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFAD-SDGALNVLDAYCRHMGGDLSQGTVK-GDEIACPFHDWRWGGDGRCKAI 78 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcCcCCCCCCCCccCccc-CCEEECCCCCCEECCCCCEEEC
Confidence 5999999999999999999999999999998 7999999999999999999999996 6899999999999999999999
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCc
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~ 212 (541)
|+.... +...++++|||++++|+||||+++++
T Consensus 79 p~~~~~--------p~~~~l~~ypv~~~~g~v~v~~~~~~ 110 (115)
T cd03531 79 PYARRV--------PPLARTRAWPTLERNGQLFVWHDPEG 110 (115)
T ss_pred CcccCC--------CcccccceEeEEEECCEEEEECCCCC
Confidence 975431 33567999999999999999999864
No 11
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.96 E-value=2.7e-29 Score=226.81 Aligned_cols=116 Identities=34% Similarity=0.793 Sum_probs=105.7
Q ss_pred CcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEE
Q 009165 84 SDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSF 163 (541)
Q Consensus 84 ~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~F 163 (541)
-+.+.+|++.||+|+.++||++|+++.++++|++++|+|+ .+|+++|++|+|||||++|+.|.++ ++.|+||||||+|
T Consensus 8 ~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~-~~g~v~A~~n~CpH~g~~L~~G~~~-~~~i~CP~Hgw~F 85 (129)
T cd04337 8 LELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRD-EDGTPGCIRDECAHRACPLSLGKVI-EGRIQCPYHGWEY 85 (129)
T ss_pred ccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEEC-CCCcEEEEeCcCCCCcCCcccCcEe-CCEEEeCCCCCEE
Confidence 4566789999999999999999999999999999999998 7899999999999999999999986 6899999999999
Q ss_pred cCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 164 DGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 164 d~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
|.+|+|+.+|..+ +...++++|||++++|+||||++++
T Consensus 86 d~tG~~~~~P~~~----------~~~~~l~~y~v~v~~g~V~V~~~~~ 123 (129)
T cd04337 86 DGDGECTKMPSTK----------CLNVGIAALPCMEQDGMIWVWPGDD 123 (129)
T ss_pred CCCCCEEeCCcCC----------CccCCcceEeEEEECCEEEEEcCCC
Confidence 9999999998643 1235799999999999999999764
No 12
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=6.1e-29 Score=228.71 Aligned_cols=121 Identities=31% Similarity=0.624 Sum_probs=107.7
Q ss_pred CcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceE
Q 009165 84 SDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWS 162 (541)
Q Consensus 84 ~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~ 162 (541)
..+..+|++.|++|+.++||+ +|+++.++++|++|+|+|+ .+|+++||+|+|||||++|+.|.+. ++.|+||||||+
T Consensus 12 ~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~-~~G~v~A~~n~CpHrG~~L~~G~~~-~~~i~CP~Hgw~ 89 (144)
T cd03479 12 TPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRD-TSGRVGLLDEHCPHRGASLVFGRVE-ECGLRCCYHGWK 89 (144)
T ss_pred CchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEe-CCCCEEEEcCcCCCCCCcccCCccc-CCEEEccCCCcE
Confidence 355688999999999999999 7999999999999999998 7999999999999999999999986 689999999999
Q ss_pred EcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 163 FDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 163 Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
||.+|+|+.+|..+.... ...+.+|++|+|++++|+|||++++.
T Consensus 90 F~~~G~~~~~P~~~~~~~-----~~~~~~l~~~~v~~~~G~I~V~~~~~ 133 (144)
T cd03479 90 FDVDGQCLEMPSEPPDSQ-----LKQKVRQPAYPVRERGGLVWAYMGPA 133 (144)
T ss_pred ECCCCCEEECCCCccccC-----CccccCcceEeEEEECCEEEEECCCC
Confidence 999999999997654221 13456899999999999999999864
No 13
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.96 E-value=2.3e-28 Score=222.77 Aligned_cols=118 Identities=29% Similarity=0.585 Sum_probs=103.0
Q ss_pred ccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcccccc-CCCCeEEcccCceEEc
Q 009165 86 SKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGWSFD 164 (541)
Q Consensus 86 ~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v-~~~g~l~CpyHGW~Fd 164 (541)
.++.|++.|++|+.++||++|+++.++++|++|+|+|+ +|+++||+|+|||||++|+.|.. .+++.|+||||||+||
T Consensus 7 ~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~--~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fd 84 (136)
T cd03548 7 AKWGFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRV--DGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYR 84 (136)
T ss_pred cccCcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEec--CCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEe
Confidence 44689999999999999999999999999999999996 89999999999999999999863 2367999999999999
Q ss_pred C-CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 165 G-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 165 ~-~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
. +|+|+.+|+.+... .....+|++|||++++|+|||++++.
T Consensus 85 l~tG~~~~~~~~p~~~------~~~~~~L~~ypv~~~~g~V~v~~~~~ 126 (136)
T cd03548 85 LDDGKLVTILANPDDP------LIGRTGLKTYPVEEAKGMIFVFVGDG 126 (136)
T ss_pred CCCccEEEcccCCCcc------ccccCCCceEeEEEECCEEEEEeCCc
Confidence 8 89999998654321 12346799999999999999999864
No 14
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=2e-28 Score=217.22 Aligned_cols=111 Identities=34% Similarity=0.797 Sum_probs=101.8
Q ss_pred ccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCc
Q 009165 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSC 169 (541)
Q Consensus 90 ~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c 169 (541)
+++.|++|+.++||+ +++..++++|++++|+|+ .+|+++|++|+|||||++|+.|.++ ++.|+||||||+||.+|+|
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~-~~g~~~a~~n~CpH~g~~L~~G~~~-~~~i~Cp~Hg~~fd~~G~~ 78 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRT-QDGRVAALEDRCPHRSAPLSKGSVE-GGGLVCGYHGLEFDSDGRC 78 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEEC-CCCCEEEeCCcCCCCCCCccCCccc-CCEEEeCCCCcEEcCCCCE
Confidence 578999999999998 999999999999999998 7999999999999999999999996 6899999999999999999
Q ss_pred cccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+.+|..... ++..++++|||++++|+|||+++++
T Consensus 79 ~~~p~~~~~--------~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 79 VHMPGQERV--------PAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred EeCCCCCCC--------CCccccccCCEEEECCEEEEEcCCc
Confidence 999976431 3457899999999999999999865
No 15
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=1.2e-28 Score=228.12 Aligned_cols=134 Identities=17% Similarity=0.277 Sum_probs=114.3
Q ss_pred CCCCcccCccccccc-CCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeE
Q 009165 77 DEYGKESSDSKFSWR-DHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHL 154 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~-~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l 154 (541)
+.++..+.|.+.+|+ +.|++|+++++|+ +|++..+.+.|++|+|+|+ .+|+++|++|+|||||++|++|....++.|
T Consensus 8 ~d~~~~~~E~~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~-~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i 86 (150)
T cd03545 8 TDRAYFDREQERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRA-EDGSLHAWVNRCAHRGALVCRERRGNDGSL 86 (150)
T ss_pred cCHHHHHHHHHhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEcccCcCCCCEecccccCCCCEE
Confidence 344667889999998 9999999999998 6899999999999999998 789999999999999999999875446799
Q ss_pred EcccCceEEcCCCCccccCCCCCCCc---hhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 155 QCSYHGWSFDGCGSCTRIPQAASEGP---EARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 155 ~CpyHGW~Fd~~G~c~~iP~~~~~~~---~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+||||||+||.+|+|+.||+.....+ .....++...+|++|+|.+++|+|||+++++
T Consensus 87 ~CP~Hgw~Fdl~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~ 146 (150)
T cd03545 87 TCVYHQWAYDLKGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDE 146 (150)
T ss_pred ECCCCCCEECCCCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCC
Confidence 99999999999999999997654211 1111234566899999999999999999875
No 16
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.95 E-value=1.3e-27 Score=215.80 Aligned_cols=117 Identities=17% Similarity=0.309 Sum_probs=100.1
Q ss_pred ceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcccc
Q 009165 94 WYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~i 172 (541)
|++|++++||+ +|+...+.+.+++|+|+|+ .+|+++||.|+|||||++|++|.+.+.+.|+||||||+||.+|+|+.+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~-~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~ 79 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRD-PDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGV 79 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEEC-CCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeec
Confidence 99999999998 6899999999999999998 799999999999999999999987545689999999999999999999
Q ss_pred CCCCCCCc-------hhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 173 PQAASEGP-------EARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 173 P~~~~~~~-------~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
|+...... .....+..+.+|++|+|++++|+|||+++++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~ 125 (129)
T cd03539 80 PFRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHD 125 (129)
T ss_pred cccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCC
Confidence 98643210 0011234466899999999999999999876
No 17
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=2.9e-27 Score=213.22 Aligned_cols=122 Identities=14% Similarity=0.256 Sum_probs=103.1
Q ss_pred cccccCCceEeeecCCCCC-CCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC
Q 009165 87 KFSWRDHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (541)
Q Consensus 87 ~~~~~~~W~pv~~~~dL~~-g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~ 165 (541)
+.+|.+.|++|+.++||++ |....++++|++|+|+|+ .+|+++|++|+|||||++|++|..++++.|+||||||+||.
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~-~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~ 80 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQ-KDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDT 80 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECC
Confidence 4578999999999999984 666778899999999998 79999999999999999999998754468999999999999
Q ss_pred CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 166 ~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+|+|+.+|+.+..-+ ...+.....++.++|.+++|+|||+++++
T Consensus 81 ~G~~~~~P~~~~~~~--~~~~~~~~~l~~~~v~~~~g~vfv~~~~~ 124 (128)
T cd03472 81 AGNLVNVPFEKEAFC--DGLDKADWGPLQARVETYKGLIFANWDAE 124 (128)
T ss_pred CcCEEeccCcccccc--cCCCHHHCCCcceeEeEECCEEEEEcCCC
Confidence 999999998653211 01223345689999999999999999876
No 18
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.94 E-value=3.8e-27 Score=209.26 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=101.6
Q ss_pred CceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccc
Q 009165 93 HWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTR 171 (541)
Q Consensus 93 ~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~ 171 (541)
.|++|++++||+ +|++.+++++|++|+|+|+ .+|+++||+|+|||||++|++|.++ ++.|+||||||+||.+|+|+.
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~-~dg~v~A~~n~C~Hrg~~L~~g~~~-~~~i~CP~Hgw~f~l~G~l~~ 78 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRD-GNGKLHAFHNVCTHRASILACGSGK-KSCFVCPYHGWVYGLDGSLTK 78 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEEC-CCCCEEEEeCCCCCCcCCccCCccc-cCEEEeCCCCCEEcCCCeEEe
Confidence 599999999998 6788899999999999998 7999999999999999999999986 679999999999999999999
Q ss_pred cCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+|....... .+....+|..++|.+++|+|||+++++
T Consensus 79 ~P~~~~~~~----~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 79 ATQATGIQN----FNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CCCcccccC----CCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 998765432 234567899999999999999999875
No 19
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=1.5e-26 Score=205.38 Aligned_cols=113 Identities=34% Similarity=0.552 Sum_probs=100.4
Q ss_pred ceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcccc
Q 009165 94 WYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~i 172 (541)
||+|+.++||+ +|+.+.+++.|++++|+|+ .+|+++|++|+|||+|++|+.|.+.+++.|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~-~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~ 79 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRD-RDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGV 79 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEEC-CCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeC
Confidence 99999999999 9999999999999999998 799999999999999999999998336899999999999999999999
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
|...... ....+..+|++|||++++|+|||+++++
T Consensus 80 P~~~~~~----~~~~~~~~L~~~~v~~~~g~v~v~~~~~ 114 (118)
T cd03469 80 PREEGFP----GFDKEKLGLRTVPVEEWGGLIFVNLDPD 114 (118)
T ss_pred CcccccC----CCCHHHCCCeEEEEEEECCEEEEEcCCC
Confidence 9754321 1123456899999999999999999875
No 20
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.93 E-value=1.4e-26 Score=213.41 Aligned_cols=130 Identities=15% Similarity=0.245 Sum_probs=109.4
Q ss_pred CCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccc-cCCCCeEEc
Q 009165 79 YGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGR-IDENGHLQC 156 (541)
Q Consensus 79 ~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~-v~~~g~l~C 156 (541)
++..+.|.+.+|.+.|++|++++||+ +|++..++++|++|+|+|+ .+|+++|++|+|||||++|+.+. ...++.|+|
T Consensus 8 ~~~~~~e~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~-~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~C 86 (146)
T cd03538 8 PEIFALEMERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRH-TDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRC 86 (146)
T ss_pred HHHHHHHHHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEEC-CCCCEEEEeccCcCCCCEeecccccccCCEEEC
Confidence 35667899999999999999999998 7999999999999999998 78999999999999999997544 333457999
Q ss_pred ccCceEEcCCCCccccCCCCCCCc--hhhccCCCCCCceeE-EEEEEcCeEEEecCCC
Q 009165 157 SYHGWSFDGCGSCTRIPQAASEGP--EARAIQSPRACATRF-PTMVSQGLLFVWPDEY 211 (541)
Q Consensus 157 pyHGW~Fd~~G~c~~iP~~~~~~~--~~~~~~~~~~~l~~~-pv~~~~G~vwV~~~~~ 211 (541)
|||||+||.+|+|+.+|...+... ..+ .....+|..+ .|++++|+|||+++++
T Consensus 87 P~Hgw~Fd~~G~~~~~p~~~~~~~~~~~~--~~~~~~L~~~~~v~~~~g~ifv~~~~~ 142 (146)
T cd03538 87 PYHAWSFKTDGSLLAIPLKKGYEGTGFDP--SHADKGMQRVGAVDIYRGFVFARLSPS 142 (146)
T ss_pred CCCCCEECCCCCEEECCchhcCCcccCCc--chhhCCCCcceeEEEECCEEEEEcCCC
Confidence 999999999999999997654321 110 1135689999 7999999999999875
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=9e-26 Score=202.27 Aligned_cols=117 Identities=16% Similarity=0.316 Sum_probs=98.1
Q ss_pred CCceEeeecCCCCC-CCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcc
Q 009165 92 DHWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCT 170 (541)
Q Consensus 92 ~~W~pv~~~~dL~~-g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~ 170 (541)
+.|++|+.++||++ |+...++++|++++|+|+ .+|+++|++|+|||||++|++|.+++++.|+||||||+||.+|+|+
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~-~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~ 79 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRD-EDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLV 79 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEEC-CCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEe
Confidence 47999999999985 777777899999999998 7999999999999999999999886446899999999999999999
Q ss_pred ccCCCCCCCchhhccCCCCCCceeEEE-EEEcCeEEEecCCC
Q 009165 171 RIPQAASEGPEARAIQSPRACATRFPT-MVSQGLLFVWPDEY 211 (541)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv-~~~~G~vwV~~~~~ 211 (541)
.+|......+ ........+|++|++ .+++|+|||+++++
T Consensus 80 ~~p~~~~~~~--~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~ 119 (123)
T cd03535 80 GVPAQQEAYG--GGFDKSQWGLRPAPNLDSYNGLIFGSLDPK 119 (123)
T ss_pred eCCCcccccc--cCcCHHHCCCccceeEEEECCEEEEEeCCC
Confidence 9997654211 112234568999985 55899999999875
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=1.3e-25 Score=201.31 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=97.8
Q ss_pred ceEeeecCCCCC-CCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcccc
Q 009165 94 WYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~-g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~i 172 (541)
|+.|+.++||++ |....+.+.|++|+|+|+ .+|+++||+|+|||||++|+.|..++...|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~-~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~ 79 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARD-KDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGA 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEEC-CCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEEC
Confidence 999999999985 677777899999999998 799999999999999999999877544579999999999999999999
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
|....... .+...+...+|++|+|++++|+|||+++++
T Consensus 80 p~~~~~~~-~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~ 117 (123)
T cd03536 80 PVEKECMH-GKMRTKAELGLHKARVTLYGGLIFATWNID 117 (123)
T ss_pred Cccccccc-cCCCCHHHCCCcceeEEEECCEEEEEeCCC
Confidence 97543210 011224456799999999999999999875
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.92 E-value=1.4e-24 Score=186.35 Aligned_cols=96 Identities=30% Similarity=0.583 Sum_probs=89.2
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcccc
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~i 172 (541)
|++|+.++||++|+++.+++.|++++|+|+ +|+++||+|+|||+|++|+.|.++ ++.|+||||||+||. +|+|+..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~--~~~~~a~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~fd~~~G~~~~~ 77 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV--DGEFYATDDLCTHGDASLSEGYVE-GGVIECPLHGGRFDLRTGKALSL 77 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE--CCEEEEECCcCCCCCCCCCCCeEe-CCEEEeCCcCCEEECCCCcccCC
Confidence 999999999999999999999999999998 679999999999999999999876 679999999999998 8999987
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEE
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV 206 (541)
|.. ..|++||+++++|.|||
T Consensus 78 p~~--------------~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 78 PAT--------------EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred CCC--------------CCcceEeEEEECCEEEE
Confidence 742 35899999999999998
No 24
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.91 E-value=2.7e-24 Score=184.88 Aligned_cols=97 Identities=27% Similarity=0.642 Sum_probs=87.7
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcccc
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~i 172 (541)
|++|+.++||++|+.+.+++.|++|+|+|+ .+|+++||+|+|||+|++|++|.++ ++.|+||||||+||. +|.|..
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~~G~~~~- 77 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRT-ADDEVFALENRCPHKGGPLSEGIVH-GEYVTCPLHNWVIDLETGEAQG- 77 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEe-CCCCEEEEcCcCCCCCCCccCCEEc-CCEEECCCCCCEEECCCCCCCC-
Confidence 999999999999999999999999999998 6799999999999999999999986 689999999999999 687642
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEe
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~ 207 (541)
| +..+|++|||++++|.|||.
T Consensus 78 p--------------~~~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 78 P--------------DEGCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C--------------CCCccceEeEEEECCEEEEC
Confidence 2 12369999999999999983
No 25
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.91 E-value=3.8e-24 Score=191.53 Aligned_cols=116 Identities=20% Similarity=0.356 Sum_probs=95.8
Q ss_pred ceEeeecCCCCC-CCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCcccc
Q 009165 94 WYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~-g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~i 172 (541)
|..|++++||++ |+...+.+.|++|+|+|+ .+|+++||.|.|||||++|+.|...+++.|+||||||+||.+|+|+.+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~-~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~ 79 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRD-KDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKV 79 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEEC-CCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEEC
Confidence 899999999994 778888999999999998 799999999999999999999877545699999999999999999999
Q ss_pred CCCCCCCchhhccCCC-CCCceeEE-EEEEcCeEEEecCCC
Q 009165 173 PQAASEGPEARAIQSP-RACATRFP-TMVSQGLLFVWPDEY 211 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~-~~~l~~~p-v~~~~G~vwV~~~~~ 211 (541)
|...... .....+.. +.+|..++ +.+++|+|||.++++
T Consensus 80 p~~~~~~-y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~ 119 (123)
T cd03542 80 KDPKTAG-YPEGFNCDGSHDLTKVARFESYRGFLFGSLNAD 119 (123)
T ss_pred CcccccC-cCcccChhhcCCCccceeEEEECCEEEEEcCCC
Confidence 9643211 11112222 46788886 566789999999875
No 26
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.91 E-value=6.5e-24 Score=184.33 Aligned_cols=97 Identities=22% Similarity=0.344 Sum_probs=87.5
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCC-ccccccCC---CCeEEcccCceEEcC-CCC
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAP-LSEGRIDE---NGHLQCSYHGWSFDG-CGS 168 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~-Ls~G~v~~---~g~l~CpyHGW~Fd~-~G~ 168 (541)
|++|+.++||++|+.+.+++.|++|+|+|+ .+|+++|++|+|||++++ |++|.+.. ++.|+||||||+||. +|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRL-PGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEe-CCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCC
Confidence 999999999999999999999999999999 667999999999999997 89998742 348999999999997 899
Q ss_pred ccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEE
Q 009165 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (541)
Q Consensus 169 c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV 206 (541)
|+..|. .+|++|||++++|.|||
T Consensus 80 ~~~~p~---------------~~l~~y~v~~~~g~v~v 102 (103)
T cd03529 80 CLEDED---------------VSVATFPVRVEDGEVYV 102 (103)
T ss_pred ccCCCC---------------ccEeeEeEEEECCEEEE
Confidence 998652 25899999999999998
No 27
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.90 E-value=1.5e-23 Score=183.55 Aligned_cols=101 Identities=28% Similarity=0.502 Sum_probs=89.5
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCC-CCcccc
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~-G~c~~i 172 (541)
|.+|+.++||++|+++.+++.|.+++|+|+ .+|+++||+|+|||+|++|+.|.++ ++.|+||||||+||.+ |.|..
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~-~~g~~~A~~n~CpH~g~~L~~g~~~-g~~i~CP~Hg~~Fdl~~G~~~~- 77 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAP-EGGEFRAFQGICPHQEIPLAEGGFD-GGVLTCRAHLWQFDADTGEGLN- 77 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEc-cCCeEEEEcCcCCCCCCCcccCccc-CCEEEeCCcCCEEECCCccccC-
Confidence 899999999999999999999999999988 7999999999999999999999975 5799999999999995 55542
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
| +..+|++|||++++|.|||++++.
T Consensus 78 ~--------------~~~~L~~~~v~v~~g~v~v~~~~~ 102 (108)
T cd03474 78 P--------------RDCRLARYPVKVEGGDILVDTEGV 102 (108)
T ss_pred C--------------CCCccceEeEEEECCEEEEeCCCc
Confidence 2 124699999999999999999753
No 28
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.90 E-value=1.9e-23 Score=180.81 Aligned_cols=100 Identities=22% Similarity=0.427 Sum_probs=91.6
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCccc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~ 171 (541)
.|+.|+.++||++|....+++.|++|+|+|. .+|+++|++|+|||++++|+.|.++ ++.|+||+|||+||. +|+|+.
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~-~~g~~~A~~~~CpH~g~~L~~G~~~-~~~i~CP~Hg~~Fdl~tG~~~~ 78 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRT-PDDQYYATDGLCTHEYAHLADGLVM-DTTVECPKHAGCFDYRTGEALN 78 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEe-CCCEEEEEcCcCCCCCCCCCCCEEc-CCEEECCccCCEEECCCCcccC
Confidence 4999999999999999999999999999997 6899999999999999999999996 689999999999997 899998
Q ss_pred cCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEec
Q 009165 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (541)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~ 208 (541)
.|.. ..|++|||++++|.|||.+
T Consensus 79 ~p~~--------------~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 79 PPVC--------------VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred CCcc--------------CCcceEeEEEECCEEEEeC
Confidence 7642 2589999999999999853
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.90 E-value=2.5e-23 Score=181.26 Aligned_cols=99 Identities=18% Similarity=0.400 Sum_probs=88.9
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCC-CCCccccccCCCCe----EEcccCceEEcC-C
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHR-LAPLSEGRIDENGH----LQCSYHGWSFDG-C 166 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHR-ga~Ls~G~v~~~g~----l~CpyHGW~Fd~-~ 166 (541)
.|++|+.++||++|..+.+++.|++|+|+|+ .+|+++|++|+|||+ +++|++|.+.+ +. |+||||||+||. +
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~-~~~~~~a~~~~CpH~g~~~L~~g~~~~-~~~~~~i~Cp~Hg~~Fdl~t 78 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRV-PGDQVFAIQNMCPHKRAFVLSRGIVGD-AQGELWVACPLHKRNFRLED 78 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEe-CCCcEEEEeCcCCCCCCccccceEEcc-CCCcEEEECCcCCCEEEcCC
Confidence 5999999999999999999999999999998 688999999999999 89999998863 43 999999999998 7
Q ss_pred CCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEec
Q 009165 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (541)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~ 208 (541)
|+|+..| ..+|++|||++++|.|||.+
T Consensus 79 G~~~~~~---------------~~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 79 GRCLEDD---------------SGSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccccCCC---------------CccEeeEeEEEECCEEEEeC
Confidence 9988633 23699999999999999964
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.89 E-value=9.7e-23 Score=177.94 Aligned_cols=101 Identities=25% Similarity=0.377 Sum_probs=90.5
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCccc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~ 171 (541)
.|+.|+.++||++|..+.+.+. ++|+|+|. +|+++|++|+|||+|++|+.|.+++++.|+||+|||+||. +|+|+.
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~--~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~ 78 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFNV--GGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALC 78 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEEE--CCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeC
Confidence 4999999999999999999877 89999997 8999999999999999999999974379999999999998 899987
Q ss_pred cCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCC
Q 009165 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDE 210 (541)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~ 210 (541)
.|. ..+|++|+|++++|.|||.+.+
T Consensus 79 ~p~--------------~~~l~~y~v~v~~g~v~v~~~~ 103 (106)
T PRK09965 79 LPA--------------TDPLRTYPVHVEGGDIFIDLPE 103 (106)
T ss_pred CCC--------------CCCcceEeEEEECCEEEEEccC
Confidence 653 2369999999999999999865
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.88 E-value=1.2e-22 Score=173.67 Aligned_cols=92 Identities=24% Similarity=0.446 Sum_probs=85.2
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCccccCCC
Q 009165 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQA 175 (541)
Q Consensus 97 v~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~iP~~ 175 (541)
|+.++||++|++..+++.|++|+|+|. +|+++|++|+|||++++|+.|.+. ++.|+||||||+||. +|+|+..|..
T Consensus 3 v~~~~~l~~g~~~~~~~~~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~CP~Hg~~Fdl~tG~~~~~p~~ 79 (95)
T cd03478 3 VCRLSDLGDGEMKEVDVGDGKVLLVRQ--GGEVHAIGAKCPHYGAPLAKGVLT-DGRIRCPWHGACFNLRTGDIEDAPAL 79 (95)
T ss_pred eeehhhCCCCCEEEEEeCCcEEEEEEE--CCEEEEEcCcCcCCCCccCCCeEe-CCEEEcCCCCCEEECCCCcCcCCCcc
Confidence 789999999999999999999999997 799999999999999999999996 689999999999998 9999987743
Q ss_pred CCCCchhhccCCCCCCceeEEEEEEcCeEE
Q 009165 176 ASEGPEARAIQSPRACATRFPTMVSQGLLF 205 (541)
Q Consensus 176 ~~~~~~~~~~~~~~~~l~~~pv~~~~G~vw 205 (541)
..|++|||++++|.||
T Consensus 80 --------------~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 --------------DSLPCYEVEVEDGRVY 95 (95)
T ss_pred --------------CCcceEEEEEECCEEC
Confidence 2489999999999987
No 32
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.85 E-value=4.4e-21 Score=167.94 Aligned_cols=100 Identities=17% Similarity=0.282 Sum_probs=87.5
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCC-ccccccCC-CC--eEEcccCceEEcC-CC
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAP-LSEGRIDE-NG--HLQCSYHGWSFDG-CG 167 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~-Ls~G~v~~-~g--~l~CpyHGW~Fd~-~G 167 (541)
.|..|+.++||++|..+.+.+.|++|+|||...+|+++|++|+|||.+++ |++|.+.+ +| .|+||+|||+||. +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 49999999999999999999999999999941379999999999999995 99999842 22 4999999999999 89
Q ss_pred CccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEe
Q 009165 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (541)
Q Consensus 168 ~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~ 207 (541)
+|+.-| ..+|++|||++++|.|||.
T Consensus 83 ~~~~~~---------------~~~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDE---------------QFSVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCC---------------CccEeeEeEEEECCEEEEe
Confidence 998633 2369999999999999984
No 33
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.85 E-value=4.6e-21 Score=166.60 Aligned_cols=99 Identities=32% Similarity=0.688 Sum_probs=90.2
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCC-CCCCccccccCCC---CeEEcccCceEEcC-CC
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPH-RLAPLSEGRIDEN---GHLQCSYHGWSFDG-CG 167 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpH-Rga~Ls~G~v~~~---g~l~CpyHGW~Fd~-~G 167 (541)
.|.+||.++||+++..+.+.+.|++|+|||. .+|+++|++|+||| ++++|++|.+++. +.|.||.|+|.||+ +|
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~-~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG 79 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRV-RDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTG 79 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEE-STTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEe-CCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCc
Confidence 5999999999999999999999999999998 79999999999999 8999999999732 38999999999999 89
Q ss_pred CccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEe
Q 009165 168 SCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVW 207 (541)
Q Consensus 168 ~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~ 207 (541)
+|+..| ..++++|||++++|.|||.
T Consensus 80 ~~~~~~---------------~~~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 80 ECLEDP---------------DVSLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp EESSEC---------------SEBSBEEEEEECTTEEEEE
T ss_pred CcCCCC---------------CCcEEeEEEEEECCEEEEC
Confidence 998733 2469999999999999984
No 34
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.84 E-value=6.8e-21 Score=163.10 Aligned_cols=94 Identities=32% Similarity=0.626 Sum_probs=79.6
Q ss_pred CceEeeecCCCCC-CCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccc-cCCCCeEEcccCceEEcCC-CCc
Q 009165 93 HWYPVSLVEDLDP-NLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGR-IDENGHLQCSYHGWSFDGC-GSC 169 (541)
Q Consensus 93 ~W~pv~~~~dL~~-g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~-v~~~g~l~CpyHGW~Fd~~-G~c 169 (541)
+|++|+.++||++ |....+.+ |...|++++ .+|+++|++|+|||+|++|+.|. ..+++.|+||||||+||.+ |+|
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~-~~~~v~~~~-~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~ 78 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDV-GGKLVLVRR-SDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGEC 78 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEE-TTEEEEEEE-TTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBE
T ss_pred CEEEeeEHHHCCCCCCEEEEEc-CCcEEEEEe-CCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceE
Confidence 6999999999997 88888888 666666666 79999999999999999999995 3335799999999999996 999
Q ss_pred cccCCCCCCCchhhccCCCCCCceeEEEEEEcC
Q 009165 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQG 202 (541)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G 202 (541)
+..|... +++.|||+++++
T Consensus 79 ~~~p~~~--------------~l~~~~v~ve~~ 97 (97)
T PF00355_consen 79 VGGPAPR--------------PLPLYPVKVEGD 97 (97)
T ss_dssp EESTTCS--------------BSTEEEEEEETT
T ss_pred ecCCCCC--------------CcCCCCeEEeCC
Confidence 9988532 589999999874
No 35
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.82 E-value=6.4e-20 Score=159.90 Aligned_cols=103 Identities=29% Similarity=0.515 Sum_probs=89.4
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~ 170 (541)
..|+.+|.++||+++..+.+.+.+...++++. .+|+++|++|+|||.+++|+.|.++++..|+||.|+|.||. +|+|+
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~-~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVR-ADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECL 81 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEe-cCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCcee
Confidence 57999999999999999999985436666666 69999999999999999999999984446999999999999 89999
Q ss_pred ccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecC
Q 009165 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (541)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~ 209 (541)
.-|+.. .|++|||++.+|.|||.++
T Consensus 82 ~~p~~~--------------~l~~y~vrve~g~v~v~~~ 106 (106)
T COG2146 82 EPPAGK--------------TLKTYPVRVEGGRVFVDLD 106 (106)
T ss_pred cCCCCC--------------ceeEEeEEEECCEEEEecC
Confidence 876431 1999999999999999863
No 36
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.82 E-value=8.1e-20 Score=156.90 Aligned_cols=92 Identities=26% Similarity=0.468 Sum_probs=84.7
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcccc
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRI 172 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~i 172 (541)
|++++..++|+++....+.+.|.+++|+|+ .+|+++|++|+|||++++|+.|.++ ++.|+||+|||+||. +|+|+..
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~a~~~~CpH~g~~l~~~~~~-~~~i~Cp~H~~~f~~~~G~~~~~ 78 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRR-EGGEVYALSNRCTHQGCPLSEGEGE-DGCIVCPCHGSRFDLRTGEVVSG 78 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEe-CCCEEEEEcCcCCCCCccCCcCccC-CCEEEeCCCCCEEeCCCccCcCC
Confidence 899999999999999999999999999998 6889999999999999999999865 689999999999999 9999987
Q ss_pred CCCCCCCchhhccCCCCCCceeEEEEEEc
Q 009165 173 PQAASEGPEARAIQSPRACATRFPTMVSQ 201 (541)
Q Consensus 173 P~~~~~~~~~~~~~~~~~~l~~~pv~~~~ 201 (541)
|. ...+.+||+++.+
T Consensus 79 p~--------------~~~l~~~~v~~~~ 93 (98)
T cd03467 79 PA--------------PRPLPKYPVKVEG 93 (98)
T ss_pred CC--------------CCCcCEEEEEEeC
Confidence 74 2458999999994
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.80 E-value=2.6e-19 Score=151.98 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=78.1
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccccCCCC
Q 009165 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176 (541)
Q Consensus 97 v~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~ 176 (541)
++.++||++|....+.+.|++|+|+|+ .+|+++||+|+|||+|++|+.|.. ++.|+||||||+||.+|+|+..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~-~~g~~~A~~~~CpH~g~~l~~g~~--~~~i~CP~Hg~~Fd~~G~~~~~Pa~- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRD-EDGVLHTVSATCTHLGCIVHWNDA--EKSWDCPCHGSRFSYDGEVIEGPAV- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEEC-CCCCEEEEcCcCCCCCCCCcccCC--CCEEECCCCCCEECCCCcEeeCCCC-
Confidence 578899999999999999999999998 799999999999999999999875 4699999999999999999987743
Q ss_pred CCCchhhccCCCCCCceeEEEEEEc
Q 009165 177 SEGPEARAIQSPRACATRFPTMVSQ 201 (541)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~pv~~~~ 201 (541)
..+.+|+|+-.+
T Consensus 78 -------------~~l~~y~v~~~~ 89 (91)
T cd03477 78 -------------SGLKPADDAPID 89 (91)
T ss_pred -------------CCCCeeEeeccc
Confidence 358899987543
No 38
>cd08878 RHO_alpha_C_DMO-like C-terminal catalytic domain of the oxygenase alpha subunit of dicamba O-demethylase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Stenotrophomonas maltophilia dicamba O-demethylase (DMO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.76 E-value=4.9e-18 Score=161.51 Aligned_cols=175 Identities=18% Similarity=0.225 Sum_probs=113.7
Q ss_pred EEEeecchhhHhhhcCCCCcccccccccccCcCCC--CCccEEEEecCccceee-c--c-C---------CCC-ceeEEE
Q 009165 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRA--KPLPFKLESSGHWGFAG-A--N-D---------GNP-RISAKF 302 (541)
Q Consensus 239 ~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~--~~~~~~v~~~~~~gf~~-~--~-~---------~~~-~~~~~f 302 (541)
.++++|||+.++||+||++|++|||++++|..+.. .+..++++..+ .|+.. . . . ... .....|
T Consensus 5 ~~~~~~n~~~~~EN~~D~~H~~fvH~~~~g~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (196)
T cd08878 5 YRHIDCNWLQVVENLMDPSHVSFVHRSSIGRDAADLPSGPPKEVEEVP-RGVTYRRWREDEDPPPFGFEGPVDRWRVIEF 83 (196)
T ss_pred cEEecCCcEEEehhCccccchhhhChhhhCccccccccCCCceEEEeC-CEEEEEEEecCCCCCCCCCCCCccEEEEEEE
Confidence 56889999999999999999999999999987664 34455554432 33321 0 0 0 111 124689
Q ss_pred ecceeeeEEEEEc-ccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccch
Q 009165 303 VAPCYYMNKIEID-TKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDG 381 (541)
Q Consensus 303 ~~P~~~~~~~~~~-~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~Vldq 381 (541)
.+|+++...+... .+. .+......++++++|+++++||+++.+.+++.... .......+...+.. ....|++|
T Consensus 84 ~~P~~~~~~~~~~~~~~---~~~~~~~~~~~~~tPid~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~v~~e 157 (196)
T cd08878 84 LLPNVLLIDPGVAPAGT---REQGVRMRVTHWITPIDETTTHYFWFFVRNFAPDE-EKKDDEELTETLRS--GLSGAFNE 157 (196)
T ss_pred ECCEEEEEecccccCCc---CCCcceEEEEEEEccCCCCeEEEEEEeccCCCCCc-cccCCHHHHHHHHH--Hhhhhchh
Confidence 9999876543210 000 01112345667789999999999998888874310 00000123333333 46789999
Q ss_pred hHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 382 DMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 382 D~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
|+.+++.|++.+... +.+..+ ..+|+++++||||+++..
T Consensus 158 D~~i~e~q~~~~~~~-----------~~~~~l--~~~D~~~~~~Rr~l~~~~ 196 (196)
T cd08878 158 DKEAVEAQQRIIDRD-----------PTREHL--GLSDKGIVRFRRLLRRLL 196 (196)
T ss_pred HHHHHHHHHHHHhcC-----------Cccccc--ccccHHHHHHHHHHHHhC
Confidence 999999999987642 122223 348999999999999863
No 39
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.73 E-value=1.5e-17 Score=149.29 Aligned_cols=97 Identities=23% Similarity=0.273 Sum_probs=83.8
Q ss_pred eEeeecCCCCCCCcEEEEECC--eEEEEEEeCC--------CCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEc
Q 009165 95 YPVSLVEDLDPNLPTAFQLLG--RDLVLWFDNN--------SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164 (541)
Q Consensus 95 ~pv~~~~dL~~g~~~~~~l~g--~~lvl~r~~~--------~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd 164 (541)
+.|+.++||++|+.+.+++.| ++++|+|..+ +|+++|++|+|||.+++|++|. +++.|+||+|||+||
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~--~~~~v~CP~Hg~~Fd 81 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP--SNKTFVCPCHFSQFD 81 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc--cCCEEEccCcCCEEe
Confidence 458899999999999999888 8999999621 6899999999999999999987 367999999999999
Q ss_pred C--CCCccccCCCCCCCchhhccCCCCCCceeEEEEEE--cCeEEEe
Q 009165 165 G--CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVW 207 (541)
Q Consensus 165 ~--~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~--~G~vwV~ 207 (541)
. +|+|+..|. ...|++||++++ +|.|||-
T Consensus 82 l~tgG~~~~gPa--------------~~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 82 PARGGQMVSGQA--------------TQNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCCCeEEcCCC--------------CCCCCeEEEEEECCCCEEEEE
Confidence 8 379997652 236999999999 9999984
No 40
>PF08417 PaO: Pheophorbide a oxygenase; InterPro: IPR013626 This domain is found in bacterial and plant proteins to the C terminus of a Rieske 2Fe-2S domain (IPR005806 from INTERPRO). One of the proteins the domain is found in is Pheophorbide a oxygenase (PaO) which seems to be a key regulator of chlorophyll catabolism. Arabidopsis PaO (AtPaO) is a Rieske-type 2Fe-2S enzyme that is identical to Arabidopsis accelerated cell death 1 and homologous to lethal leaf spot 1 (LLS1) of maize [], in which the domain described here is also found. ; GO: 0010277 chlorophyllide a oxygenase [overall] activity, 0055114 oxidation-reduction process
Probab=99.70 E-value=3.2e-17 Score=139.43 Aligned_cols=86 Identities=33% Similarity=0.500 Sum_probs=69.3
Q ss_pred EecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccch
Q 009165 302 FVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDG 381 (541)
Q Consensus 302 f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~Vldq 381 (541)
|++||++.++..... ..+.+..+++++|++|++||+||+++++++||. ..+.+++|+|+.|+.+|.||||
T Consensus 1 F~pPc~v~~~~~~~~----~~~~~~~~~~~~~~vP~~pG~~Rli~r~~~~f~------~~~~k~~P~wl~H~~~n~VLd~ 70 (92)
T PF08417_consen 1 FIPPCLVRSTEEGPK----KKSCGKRLHQVFYCVPTGPGRCRLIWRFPRNFP------AWIFKLIPRWLSHLTSNKVLDQ 70 (92)
T ss_pred CCCCEEEEEeccccc----cCCCCCEEEEEEEEEECCCCeEEEEEEehhhhh------hHHhhcCCHHHHHHhhCcccHH
Confidence 789999988621111 122334567788999999999999999999982 2244899999999999999999
Q ss_pred hHHHHHhhHHHHhhhc
Q 009165 382 DMIVLQGQEKIFLSKL 397 (541)
Q Consensus 382 D~~iL~~Qer~l~~~~ 397 (541)
|+.+||.||+.+++.|
T Consensus 71 Dl~lLh~Qe~~l~~~g 86 (92)
T PF08417_consen 71 DLYLLHGQERRLAREG 86 (92)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998764
No 41
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.66 E-value=6.2e-16 Score=138.07 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=70.2
Q ss_pred CCCcEEEE--ECCeEEEEEEeCCCCeE--EEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccccCCCCCCCc
Q 009165 105 PNLPTAFQ--LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGP 180 (541)
Q Consensus 105 ~g~~~~~~--l~g~~lvl~r~~~~g~~--~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~ 180 (541)
+|+...++ ..+..|+|++ .+|++ +|++|+|||+|++|+.|.. ++.|+||+|||+||.+|+++..|.
T Consensus 22 ~~~~~~~~~~~~~~~Ilv~~--~dg~i~~~A~~~~CpH~G~~l~~~~~--~~~i~CP~Hg~~Fd~tG~~~~gPa------ 91 (126)
T cd03471 22 PGDRSLVQGLKGDPTYLIVE--EDKTIANYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDATGKVVRGPA------ 91 (126)
T ss_pred CCCeEEEEEecCCeEEEEEe--CCCeEEEEEecCCCcCCCCCcCccCC--CCEEEcCCCCCEECCCCCEecCCC------
Confidence 67776655 3445556655 48877 8999999999999998754 469999999999999999987653
Q ss_pred hhhccCCCCCCceeEEEEEEcCeEEEecC
Q 009165 181 EARAIQSPRACATRFPTMVSQGLLFVWPD 209 (541)
Q Consensus 181 ~~~~~~~~~~~l~~~pv~~~~G~vwV~~~ 209 (541)
...|..|+|++++|.|||.+-
T Consensus 92 --------~~~L~~y~V~vedg~I~V~~~ 112 (126)
T cd03471 92 --------PLSLALVHATVDDDKVVLSPW 112 (126)
T ss_pred --------CCCCceEeEEEECCEEEEEEC
Confidence 246899999999999999764
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.66 E-value=2.7e-16 Score=135.39 Aligned_cols=71 Identities=17% Similarity=0.380 Sum_probs=64.6
Q ss_pred cCCCCCCCcEEEEE-CCeEEEEEEeCCCCeEEEEccCCCCCCCCcccc--ccCCCCeEEcccCceEEcC-CCCccccC
Q 009165 100 VEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG--RIDENGHLQCSYHGWSFDG-CGSCTRIP 173 (541)
Q Consensus 100 ~~dL~~g~~~~~~l-~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G--~v~~~g~l~CpyHGW~Fd~-~G~c~~iP 173 (541)
+.+|++|..+.+.+ .|++|+|+|. +|+++|++|+|||++++|+.| .++ ++.|+||+|||+||. +|+++.-|
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~~--~G~~~A~~n~CpH~g~pL~~g~g~~~-g~~V~CP~Hg~~FDLrTG~~~~~p 88 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYKS--KSELKACKNQCKHQGGLFIKDIEDLD-GRTVRCTKHNWKLDVSTMKYVNPP 88 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEEE--CCEEEEEcCCCCCCCccccCCcceEe-CCEEEeCCCCCEEEcCCCCCccCC
Confidence 47899999999999 9999999997 899999999999999999995 575 789999999999999 89998744
No 43
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.63 E-value=1.3e-15 Score=137.18 Aligned_cols=95 Identities=24% Similarity=0.274 Sum_probs=79.9
Q ss_pred eEeeecCCCCCCCcEEEEECC--eEEEEEEeC--------CCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEc
Q 009165 95 YPVSLVEDLDPNLPTAFQLLG--RDLVLWFDN--------NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164 (541)
Q Consensus 95 ~pv~~~~dL~~g~~~~~~l~g--~~lvl~r~~--------~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd 164 (541)
+.|+.++||++|+++.+++.+ .+++++|.. .+|+++||+|.|||.+++|+.|. +++.|.||.|||+||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~--~~~~i~CP~Hga~Fd 84 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA--DNKTFNCPCHFSVFD 84 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc--CCCEEEcCCCCCEEC
Confidence 358999999999999999875 478888730 37999999999999999999975 367999999999999
Q ss_pred CC--CCccccCCCCCCCchhhccCCCCCCceeEEEEEE-cCeEE
Q 009165 165 GC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLF 205 (541)
Q Consensus 165 ~~--G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~-~G~vw 205 (541)
.+ |+|+..|. ..+|.+|||++. +|.||
T Consensus 85 l~tgG~~~~gP~--------------~~~L~~y~v~v~~~G~V~ 114 (129)
T TIGR02694 85 PEKGGQQVWGQA--------------TQNLPQIVLRVADNGDIF 114 (129)
T ss_pred CCCCCcEECCCC--------------CCCCCeeEEEEECCCeEE
Confidence 96 68986552 246999999997 58998
No 44
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.55 E-value=2.9e-14 Score=128.12 Aligned_cols=93 Identities=14% Similarity=0.226 Sum_probs=78.5
Q ss_pred ecCCCCCCCcEEEEECCeEEEEEEe-CC--------------------------CCeEEEEccCCCCCCCCccccccCCC
Q 009165 99 LVEDLDPNLPTAFQLLGRDLVLWFD-NN--------------------------SNKWVAFDDKCPHRLAPLSEGRIDEN 151 (541)
Q Consensus 99 ~~~dL~~g~~~~~~l~g~~lvl~r~-~~--------------------------~g~~~a~~d~CpHRga~Ls~G~v~~~ 151 (541)
.+++|++|+.+.+.+.|++|+|+|. .. +|+++|+.++|||.|+.+..+.+. +
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~-~ 83 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGD-Y 83 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCC-C
Confidence 4688999999999999999999984 11 679999999999999998877654 6
Q ss_pred CeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEc-CeEEE
Q 009165 152 GHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQ-GLLFV 206 (541)
Q Consensus 152 g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~-G~vwV 206 (541)
+.+.||+|||+||.+|+.+..|. ...|..||+++.+ +.|+|
T Consensus 84 ~~~~CPcHgs~Fdl~G~~~~gPa--------------~~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 84 GGFFCPCHGSHYDASGRIRKGPA--------------PLNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred CEEEecCcCCEECCCCeEecCCC--------------CCCCCeeeEEEecCCEEEe
Confidence 79999999999999999887653 2368999999877 66665
No 45
>cd00680 RHO_alpha_C C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC), and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-te
Probab=99.49 E-value=1.2e-13 Score=130.50 Aligned_cols=165 Identities=15% Similarity=0.099 Sum_probs=101.9
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcC---CCCCccEEEEec---Cccce----eecc--------CCCCcee
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRD---RAKPLPFKLESS---GHWGF----AGAN--------DGNPRIS 299 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~---~~~~~~~~v~~~---~~~gf----~~~~--------~~~~~~~ 299 (541)
..++++||||+++||++|+||++++|+++++... ......+.+... ...+. .... .......
T Consensus 3 ~~~~~~~NWK~~~En~~E~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (188)
T cd00680 3 YEYEVDCNWKLAVENFLECYHVPTVHPDTLATGLPLPLLFGDHYRVDDTGEGPGEGLSRHWGDGKGPQSALPGLKPGGYL 82 (188)
T ss_pred eEEEeccCceEehhhccccccccccChhhhccccccCcccCCceEEEeccCCCCChhhcccchhhhcccccccccccCeE
Confidence 3578999999999999999999999999987421 001112222210 00111 0000 0011224
Q ss_pred EEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcc--cccc
Q 009165 300 AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHW--TSNK 377 (541)
Q Consensus 300 ~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~--~~~~ 377 (541)
..+++||+++... . . .+++..++|++|++|++.+........ . ......+++..+ ....
T Consensus 83 ~~~~fPn~~~~~~---------~-~---~~~~~~~~P~~~~~t~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~ 143 (188)
T cd00680 83 YLYLFPNLMIGLY---------P-D---SLQVQQFVPIGPNKTRLEVRLYRPKDE---D---AREEFDAELESLAGILRQ 143 (188)
T ss_pred EEEECCcEeeeec---------C-C---EEEEEEEEecCCCcEEEEEEEEEeccc---c---cchhhHHHHHHhHHHHHH
Confidence 6789999986521 1 1 234556799999999998876544311 0 001223333332 3568
Q ss_pred ccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 378 VYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 378 VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
|++||..+++.||+++.+.+. +.+.+. .....+..|++|+++..
T Consensus 144 v~~ED~~~~e~~Q~gl~s~~~----------~~~~l~--~~E~~i~~f~~~~~~~~ 187 (188)
T cd00680 144 VLDEDIELCERIQRGLRSGAF----------RGGPLS--PLEEGIRHFHRWLRRAL 187 (188)
T ss_pred HHHHHHHHHHHHhccccCCcC----------CCCCCC--cccccHHHHHHHHHHhc
Confidence 999999999999999876532 334333 34679999999999864
No 46
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.44 E-value=6.6e-13 Score=126.25 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=71.7
Q ss_pred CCCCcEEEE-ECCeE-EEEEEeCCCCeE--EEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccccCCCCCCC
Q 009165 104 DPNLPTAFQ-LLGRD-LVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEG 179 (541)
Q Consensus 104 ~~g~~~~~~-l~g~~-lvl~r~~~~g~~--~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~ 179 (541)
++|++..+. +.|.+ +++.+ .+|++ +|+++.|||.|++|+.+.. ++.+.||+|||+||.+|+++..|.
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~--~~g~~~~~a~~~~CtH~gc~l~~~~~--~~~~~CP~Hgs~Fd~tG~~~~gPa----- 143 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVE--EDGTIASYGINAVCTHLGCVVPWNSG--ENKFQCPCHGSQYDATGKVVRGPA----- 143 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEe--CCCEEEEEEecCCCCCCCCccccccC--CCEEEecCcCCEECCCCCCccCCC-----
Confidence 567777776 66777 55555 48999 6779999999999999875 359999999999999999887653
Q ss_pred chhhccCCCCCCceeEEEEEEcCeEEEec
Q 009165 180 PEARAIQSPRACATRFPTMVSQGLLFVWP 208 (541)
Q Consensus 180 ~~~~~~~~~~~~l~~~pv~~~~G~vwV~~ 208 (541)
...|+.|+|++++|.|+|.+
T Consensus 144 ---------~~~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 144 ---------PLSLALVHVTVEDDKVLFSP 163 (178)
T ss_pred ---------CCCCCeEeEEEECCEEEEEE
Confidence 24689999999999999877
No 47
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.30 E-value=1.4e-11 Score=118.12 Aligned_cols=164 Identities=12% Similarity=0.044 Sum_probs=96.2
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCcc--------EEEEecCc---cceee----ccCCC---C-ce
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLP--------FKLESSGH---WGFAG----ANDGN---P-RI 298 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~--------~~v~~~~~---~gf~~----~~~~~---~-~~ 298 (541)
..++++||||+++||++|+||++.+|+++++......... +....... ..... .+... . ..
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (190)
T cd08885 4 EEEVWDTNWKVLAENFMEGYHLPGLHPGTLHPFMPAELSYFRPEDGRGFTRHKGTKHFNETIEPAHPPNPGLTEEWRRRL 83 (190)
T ss_pred eeeeccCCchhhHhhcCccccccccccchhhccCchhhcccccCCCcceeeeecccccccCccccCCCCCCCChhhhcce
Confidence 3578999999999999999999999999875432110000 00000000 00000 00000 0 12
Q ss_pred eEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcc--ccc
Q 009165 299 SAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHW--TSN 376 (541)
Q Consensus 299 ~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~--~~~ 376 (541)
...+++||++++.. ... +.+..+.|++|++|++.+....... ...+.. ...|...+ ...
T Consensus 84 ~~~~iFPN~~i~~~----------~~~---~~~~~~~P~~~~~t~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~ 144 (190)
T cd08885 84 VLFAIFPTHLLALT----------PDY---VWWLSLLPEGAGRVRVRWGVLVAPE---AADDPE---AAEYIAELKALLD 144 (190)
T ss_pred EEEEECCcEEEEec----------CCe---EEEEEEEecCCCeEEEEEEEEEcch---hcccch---hHHHHHHHHHHHH
Confidence 34568899987531 111 2233468999999999875432211 000000 01121111 245
Q ss_pred cccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHh
Q 009165 377 KVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (541)
Q Consensus 377 ~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~ 432 (541)
.|++||..+++.+|+++.+.+ +..+.+.+ .+..+..|++||++.
T Consensus 145 ~v~~ED~~~~e~~Q~Gl~S~~----------~~~g~l~~--~E~~i~~fh~~l~~~ 188 (190)
T cd08885 145 AINDEDRLVVEGVQRGLGSRF----------AVPGRLSH--LERPIWQFQRYLASR 188 (190)
T ss_pred HHHHHHHHHHHHhcccccCCC----------CCCCCCCc--ccccHHHHHHHHHHH
Confidence 789999999999999997653 34555544 599999999999875
No 48
>cd08883 RHO_alpha_C_CMO-like C-terminal catalytic domain of plant choline monooxygenase (CMO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of plant choline monooxygenase and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-
Probab=99.29 E-value=3.5e-11 Score=114.20 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=96.6
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCc---cceee--ccC----CC-CceeEEEeccee
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGH---WGFAG--AND----GN-PRISAKFVAPCY 307 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~---~gf~~--~~~----~~-~~~~~~f~~P~~ 307 (541)
...++++|||+++||++|+||++++|+++++.-.. . .+.++..+. .++.. ... .. ......+++||+
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN~ 80 (175)
T cd08883 4 REYVIECNWKVYVDNYLEGYHVPFAHPGLAAVLDY-A--TYRTELFEYVSLQSAPARAEEGSFFYRLGNAALYAWIYPNL 80 (175)
T ss_pred EEeeeecCceEEehhcCCcccCcccchhHHhhccc-C--ceEEEEcCcEEEEEecccCCCCccccccCcCeEEEEECCCE
Confidence 35688999999999999999999999998754211 1 122221110 01110 000 00 112346788999
Q ss_pred eeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHH
Q 009165 308 YMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQ 387 (541)
Q Consensus 308 ~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~ 387 (541)
+++.. + .. +.+..+.|++|++|++...+..... . ..........+. ...|++||..+++
T Consensus 81 ~i~~~---------~-~~---~~~~~~~P~~p~~t~~~~~~~~~~~----~-~~~~~~~~~~~~---~~~v~~ED~~i~e 139 (175)
T cd08883 81 MLNRY---------P-PG---MDVNVVLPLGPERCKVVFDYFVDDS----D-GSDEAFIAESIE---SDRVQKEDIEICE 139 (175)
T ss_pred eeeec---------C-Ce---EEEEEEEeCCCCcEEEEEEEEEecc----c-cchhHHHHHHHH---HHHHHHHHHHHHH
Confidence 87521 2 21 2233458999999999775443221 0 000011111111 4578999999999
Q ss_pred hhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 388 GQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 388 ~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
.+|+++.+.+ +..+.+.+ ..+..|..|++|+++..
T Consensus 140 ~vQ~Gl~S~~----------~~~G~l~~-~~E~~v~~Fh~~l~~~l 174 (175)
T cd08883 140 SVQRGLESGA----------YDPGRFSP-KRENGVHHFHRLLAQAL 174 (175)
T ss_pred HHhhhhcCCC----------CCCCCCCC-ccchHHHHHHHHHHHhh
Confidence 9999998754 33444432 35889999999999863
No 49
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.25 E-value=2.7e-11 Score=114.90 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=77.5
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCC---------------------------------CCeEEEEccCCCCC
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN---------------------------------SNKWVAFDDKCPHR 139 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~---------------------------------~g~~~a~~d~CpHR 139 (541)
.|..| .+++|++|+.+.+.+.|++|+|+|... +++++|+.+.|||.
T Consensus 40 ~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~ 118 (174)
T TIGR01416 40 APTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHL 118 (174)
T ss_pred CcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCC
Confidence 36777 789999999999999999999998411 48999999999999
Q ss_pred CCC-ccccccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCe
Q 009165 140 LAP-LSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGL 203 (541)
Q Consensus 140 ga~-Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~ 203 (541)
|+. +..+.....+.+.||+||++||.+|+.+..|. ...|..||++..++.
T Consensus 119 Gc~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa--------------~~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 119 GCIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPA--------------PLNLPVPPYKFLSDT 169 (174)
T ss_pred CCccccccCCCCCCEEEeCCCCCEECCCCcEecCCC--------------CCCCCCCCEEEcCCC
Confidence 964 55655433468999999999999999886542 246899999987663
No 50
>cd08886 RHO_alpha_C_2 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.25 E-value=4.6e-11 Score=114.28 Aligned_cols=161 Identities=13% Similarity=0.132 Sum_probs=96.6
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCcc-------ceeeccC---C-CCceeEEEecce
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHW-------GFAGAND---G-NPRISAKFVAPC 306 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~-------gf~~~~~---~-~~~~~~~f~~P~ 306 (541)
..+++.||||+++||++|+||++++|+.+++.... . .+.++..+.+ ++..... . .......+++||
T Consensus 4 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lFPN 80 (182)
T cd08886 4 LTSEIKANWKNVVDNYLECYHCHTAHPDFVDSLDM-D--TYKHTTHGNYSSQMANYGSAENSEYSVKPDADFAFYWLWPN 80 (182)
T ss_pred EEEEeecccEEEEecCCccccCcccChhHHhcccc-c--ccEEEecCcEEEEEeccccccccccccccCcceeEEEEeCC
Confidence 45789999999999999999999999998754221 1 1112211111 1110000 0 011235678899
Q ss_pred eeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcccccccc-chhHHH
Q 009165 307 YYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVY-DGDMIV 385 (541)
Q Consensus 307 ~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~Vl-dqD~~i 385 (541)
++++.. | +... +.+..+.|++|++|++.+.++..- ..+..... +.+. +...|+ +||..+
T Consensus 81 ~~i~~~------~--~~~~---~~~~~~~P~~p~~t~~~~~~~~~~---~~~~~~~~----~~~~--~~~~v~~~ED~~l 140 (182)
T cd08886 81 TMLNVY------P--GAGN---MGVINIIPVDAETTLQHYDFYFRD---EELTDEEK----ELIE--YYRQVLQPEDLEL 140 (182)
T ss_pred EEEEee------C--CCCe---EEEEEEEeCCCCeEEEEEEEEecC---CCccHHHH----HHHH--HHHHhcchhhHHH
Confidence 987631 1 1111 233456899999999876433110 01111111 1111 245677 999999
Q ss_pred HHhhHHHHhhhcccCCcccccccccccccc-----ccccHHHHHHHHHHHH
Q 009165 386 LQGQEKIFLSKLMEGSEDVNKEYTKITFTP-----TQADRLVLAFRNWLRR 431 (541)
Q Consensus 386 L~~Qer~l~~~~~~~~~~~~~~~~~~~~lP-----~~aD~~VvafRrWl~~ 431 (541)
++.+|+++.+.. |+.+.+.| ...+..+..|++||++
T Consensus 141 ~e~vQ~Gl~S~~----------~~~g~l~~~~~~~~~~E~~v~~fh~~l~~ 181 (182)
T cd08886 141 VESVQRGLKSRA----------FGQGRIVVDPSGSGISEHAVHHFHGLVLE 181 (182)
T ss_pred HHHHhcccccCC----------CCCceeccCcccCCccchhHHHHHHHHhc
Confidence 999999987643 44555642 2458999999999975
No 51
>cd08887 RHO_alpha_C_3 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=99.18 E-value=1.2e-10 Score=110.74 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=95.7
Q ss_pred EEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEec-Cccce--------eeccCC----C-CceeEEEe
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESS-GHWGF--------AGANDG----N-PRISAKFV 303 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~-~~~gf--------~~~~~~----~-~~~~~~f~ 303 (541)
...+++||||+++||++|+||++++|+++++.........++.... ...++ .+.... . ......++
T Consensus 4 ~~~~~~~NWK~~~en~~E~YH~~~~H~~t~~~~~~~~~~~~~~~g~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (185)
T cd08887 4 RRFDVAANWKLALDGFLEGYHFKVLHKNTIAPYFYDNLSVYDAFGPHSRIVFPRKSIESLRDLPEDEWDLRRHLTVIYTL 83 (185)
T ss_pred eeeecCCCceEehhhcccccccchhchhhhcccccCCceEEeccCCeeeeecchhhHHHHhcCChhHCCccCCeeEEEEE
Confidence 3568899999999999999999999999986432222111111000 00000 000000 0 01123467
Q ss_pred cceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcc-cc-ccccch
Q 009165 304 APCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHW-TS-NKVYDG 381 (541)
Q Consensus 304 ~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~-~~-~~Vldq 381 (541)
+||++++.. ++ .+.+..+.|++|++|++.+...... ..+.+.. ...|.... .. ..|++|
T Consensus 84 FPN~~i~~~---------~~----~~~~~~~~P~~~~~t~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~v~~E 144 (185)
T cd08887 84 FPNVSLLVQ---------PD----HLEIIQIEPGSPDRTRVTVYLLIPP---PPDTEEA---RAYWDKNWDFLMAVVLDE 144 (185)
T ss_pred CCceEEEec---------CC----eEEEEEEEcCCCCceEEEEEEEecC---CCCcHHH---HHHHHHHHHHHHhhhHHH
Confidence 899986521 11 1223356899999999977543221 1111111 01111111 12 578999
Q ss_pred hHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHh
Q 009165 382 DMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRH 432 (541)
Q Consensus 382 D~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~ 432 (541)
|..+++.+|+++.+.+.+ .+.+ ...+..+..|++|+++.
T Consensus 145 D~~~~e~~Q~Gl~s~~~~----------~~~l--~~~E~~i~~fh~~~~~~ 183 (185)
T cd08887 145 DFEVAEEIQRGLASGAND----------HLTF--GRNESALQHFHRWLERA 183 (185)
T ss_pred HHHHHHHHhhhhhcCCCC----------ceEe--ecCCHHHHHHHHHHHHH
Confidence 999999999999865332 2222 35799999999999976
No 52
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=99.18 E-value=1.7e-10 Score=112.29 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=96.8
Q ss_pred EEEEeecchhhHhhhcCCCCccccccccccc-CcC--CCCCc-------cEEE---------EecCcccee------ecc
Q 009165 238 IQRDLFYGYDTLMENVSDPSHIDFAHHKVTG-RRD--RAKPL-------PFKL---------ESSGHWGFA------GAN 292 (541)
Q Consensus 238 ~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g-~~~--~~~~~-------~~~v---------~~~~~~gf~------~~~ 292 (541)
..++++||||+++||++|+||++++|+++.. -.+ ..... .+.. ++....|-. +..
T Consensus 14 ~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 93 (205)
T cd08884 14 ISYEVAANWKLVVENYRECYHCAGVHPELARSLSEFDDGGNPDPEAGGADFRGRRGPLRGGAESFTMDGKAVAPPLPGLT 93 (205)
T ss_pred eEEEEccCceehhHhCcccccCccccHHHHhhcccccccccccccccccceeeecccccCCceeecCCCCcccCCCCCCC
Confidence 4578999999999999999999999999763 111 00000 0000 000000100 000
Q ss_pred CCC-CceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhh
Q 009165 293 DGN-PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHE 371 (541)
Q Consensus 293 ~~~-~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~ 371 (541)
.+. ......+++||++++.. ++ .+.+..+.|++|++|++.+.....-.....+...+.+++
T Consensus 94 ~~~~~~~~~~~lfPN~~~~~~---------~d----~~~~~~~~P~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~----- 155 (205)
T cd08884 94 EADDRGALYYTLYPNSFLHLH---------PD----HVVTFRVLPLSPDETLVRCKWLVHPDAVEGVDYDLDDLV----- 155 (205)
T ss_pred ccccCceEEEEeCCcEEEEEc---------CC----EEEEEEEEeCCCCceEEEEEEEECCchhcccccCHHHHH-----
Confidence 101 11235678899976521 22 233445689999999997754422110000000111111
Q ss_pred ccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 372 HWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 372 H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
.+...|++||..+++.+|+++.+.+ |+.+.|.+ .+..+..|++|+++..
T Consensus 156 -~~~~~v~~ED~~i~e~vQ~Gl~S~~----------~~~g~l~~--~E~~v~~F~~~~~~~l 204 (205)
T cd08884 156 -EVWDATNRQDWAICERNQRGVNSPA----------YRPGPYSP--MEGGVLAFDRWYLERM 204 (205)
T ss_pred -HHHHHHHHHHHHHHHHhcccccCCC----------cCCCCcCC--ccHHHHHHHHHHHHHh
Confidence 1345899999999999999987643 45666655 5799999999998763
No 53
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=99.15 E-value=6.1e-11 Score=113.31 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=95.5
Q ss_pred EEEeecchhhHhhhcCCCCcccccccccccCcCCCCCc---cEEEEecCccceee--------------------c----
Q 009165 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPL---PFKLESSGHWGFAG--------------------A---- 291 (541)
Q Consensus 239 ~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~---~~~v~~~~~~gf~~--------------------~---- 291 (541)
.++++||||+++||++|+||++++|.++++........ ...++..+..+... .
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPSNDEQAEIASVEFFGGHGSVWAGRMREEPQPEPSERRAWKGRPFPP 90 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCTTGGHHEEEEEEEESSTCEEETHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhccccccccccccccccccccccccccccccccccchhhhhhhhhccc
Confidence 35789999999999999999999999985432211111 11111111111110 0
Q ss_pred --cC-CCCceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchh
Q 009165 292 --ND-GNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPR 368 (541)
Q Consensus 292 --~~-~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~pr 368 (541)
.. ........+++||+++... ++. .. +..++|++|++|++.+........ ...+.+.+.+-+
T Consensus 91 ~~~~~~~~~~~~~~iFPn~~i~~~---------~~~-~~---~~~~~P~~p~~t~~~~~~~~~~~~--~~~~~~~~~~~~ 155 (209)
T PF00848_consen 91 GLPDDQRMGYRNYVIFPNLSIIVY---------PDH-FT---VRTIIPIGPDRTEVWSWWFVPKDE--GAPPEFREARIR 155 (209)
T ss_dssp HHHHHHHTSEEEEEETTTEEEEE----------TTT-TE---EEEEEEESTTEEEEEEEEEEETT----STHHHHHHHHH
T ss_pred cccccccccccceeeCCCEEEEec---------ccc-cE---EEEEEECCCCeEEEEEEEEEeCCc--ccchhhHHHHHH
Confidence 00 0011246789999987521 111 12 234589999999998754432210 011122211111
Q ss_pred hhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 369 WHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 369 w~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
.+.+... |+.||+.+++.||+++.+.+.+ ++.+ ....|..|..|++|++++.
T Consensus 156 ~~~~~~~--~~~ED~~~~e~~Q~gl~s~~~~----------~~~~-~~~~E~~v~~f~~~~~~~~ 207 (209)
T PF00848_consen 156 NWDRFFG--VFAEDIEIVERQQRGLRSRGFD----------PGRL-SGTSERGVRHFHRWWRRYM 207 (209)
T ss_dssp HHHHHHS--THHHHHHHHHHHHHHTTSSTSC----------TSEE-SSCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCc--HHHHHHHHHHHHHHHHcCCCCC----------CCCC-CCcCCHHHHHHHHHHHHHh
Confidence 1111111 9999999999999999774432 3332 2468999999999999863
No 54
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=98.83 E-value=2.1e-08 Score=94.02 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=50.5
Q ss_pred CCeEEEEccCCCCCCCCcc---------------ccccCCCCeEEcccCceEEcC-CCC-ccccCCCCCCCchhhccCCC
Q 009165 126 SNKWVAFDDKCPHRLAPLS---------------EGRIDENGHLQCSYHGWSFDG-CGS-CTRIPQAASEGPEARAIQSP 188 (541)
Q Consensus 126 ~g~~~a~~d~CpHRga~Ls---------------~G~v~~~g~l~CpyHGW~Fd~-~G~-c~~iP~~~~~~~~~~~~~~~ 188 (541)
+|+++|++++|||.|++|. +|..+ ++.|.||+|||+||. +|. .+..| .
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~-~~~i~CPcHgS~FD~~tGg~v~~GP--------------A 138 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASK-GAVIHCCCHGSTYDPYKGGVVLTGP--------------A 138 (171)
T ss_pred CCEEEEEeCcCCCCCCccccccccccccccccccccccc-CCEEEcCCCCCEEeCCCCCeEcCCC--------------C
Confidence 6899999999999999775 34443 679999999999999 464 33222 2
Q ss_pred CCCceeEEEEEEc--CeEEE
Q 009165 189 RACATRFPTMVSQ--GLLFV 206 (541)
Q Consensus 189 ~~~l~~~pv~~~~--G~vwV 206 (541)
...|..|++++++ |.||+
T Consensus 139 ~~pLp~~~L~~d~~~d~iyA 158 (171)
T cd03475 139 PRPLPAVILEYDSSTDDLYA 158 (171)
T ss_pred CCCcCEeEEEEeCCCCcEEE
Confidence 2458999999884 77775
No 55
>cd08882 RHO_alpha_C_MupW-like C-terminal catalytic domain of Pseudomonas fluorescens MupW and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas fluorescens MupW and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-l
Probab=98.49 E-value=7.8e-07 Score=89.09 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=61.2
Q ss_pred EEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEe--cCCCeEEEEEEeeccccc-cCCCCc----chhccchhhhhc
Q 009165 300 AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVP--MAPGKTRSIVCSARNFFQ-FTMPGP----AWWQVVPRWHEH 372 (541)
Q Consensus 300 ~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tP--v~pg~~R~~~~~~Rnf~~-~~~p~~----~~~~l~prw~~H 372 (541)
..+++||+++.. +... .++..+.| ++|++|++...+...... ...+.. ..+...+.+.
T Consensus 129 ~~~lFPN~~i~~----------~p~~---~~~~r~~P~~~dpd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 193 (243)
T cd08882 129 HYTLFPNFTILP----------GPDG---LLVYRFRPHGDDPEKCIFDIWSLERYPEGAEPPEPPEEHEVFSDAPELG-- 193 (243)
T ss_pred eEEECCCccccC----------CCCc---cEEEEeecCCCCCCeEEEEEEEEEECCCCCCCCCCCccccccccccccc--
Confidence 456789887541 1221 12334578 699999987654322110 000000 1011111110
Q ss_pred cccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhc
Q 009165 373 WTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHG 433 (541)
Q Consensus 373 ~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~ 433 (541)
....|++||..+++.+|+++.+.+.+ ...+.+ .-+..|..|++||+++.
T Consensus 194 -~~~~V~~ED~~~~e~vQ~Gl~S~~~~----------~~~l~~-~EE~~I~~FH~~l~~~l 242 (243)
T cd08882 194 -GLGLVLDQDFSNLPAVQKGMHSRGFG----------GLVLAN-QEESRIRHFHEVLDDYL 242 (243)
T ss_pred -cccchhHhHHHHHHHHHHHhccCCCC----------CcccCc-hHHHHHHHHHHHHHHHh
Confidence 13689999999999999999875432 232222 22589999999999874
No 56
>cd08880 RHO_alpha_C_ahdA1c-like C-terminal catalytic domain of the large/alpha subunit (ahdA1c) of a ring-hydroxylating dioxygenase from Sphingomonas sp. strain P2 and related proteins. C-terminal catalytic domain of the large subunit (ahdA1c) of the AhdA3A4A2cA1c salicylate 1-hydroxylase complex from Sphingomonas sp. strain P2, and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). AhdA3A4A2cA1c is one of three known isofunctional salicylate 1-hydroxylase complexes in strain P2, involved in phenanthrene degradation, which catalyze the monooxygenation of salicylate, the metabolite of phenanthene degradation, to produce catechol. This complex prefers salicylate over other substituted salicylates; the other two salicylate 1-hydroxylases have different substrate preferences. RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative deg
Probab=98.46 E-value=1.8e-06 Score=85.38 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=75.5
Q ss_pred EEeecchhhHhhhcCCCCccccccc--ccccCcCCCCCccEEEEecCcc---------------ce-------ee-----
Q 009165 240 RDLFYGYDTLMENVSDPSHIDFAHH--KVTGRRDRAKPLPFKLESSGHW---------------GF-------AG----- 290 (541)
Q Consensus 240 ~d~~~~~~~~~EN~lD~~H~~~~H~--~~~g~~~~~~~~~~~v~~~~~~---------------gf-------~~----- 290 (541)
.++++|||+.+||+.|+||++.+|. .++|...........++..+.. ++ ..
T Consensus 6 ~~~~~nwk~~~~~~~~~yh~~~~h~~~~t~g~~~~~~~~~~~~~~~g~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 85 (222)
T cd08880 6 QRIPGNWKLYAENVKDPYHASLLHLFFVTFGLWRADQKSSIIDDEHGRHSVMTSTKSGDDEAAEKDSEEIRSFRDDFTLL 85 (222)
T ss_pred eecCCCcHHHHHhccCcchHHHHhhhheeeecccCCCCCceEEecCCCceEEEEecCCCcccccchHHHHHHHhhccccC
Confidence 4689999999999999999999999 6666421111101112111100 00 00
Q ss_pred -c--------cCCCCceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcc
Q 009165 291 -A--------NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPA 361 (541)
Q Consensus 291 -~--------~~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~ 361 (541)
. ..+........++||+.+... .+ .+.+..+.|++|++|++.+.+...- ...+.
T Consensus 86 d~~~~~~~~e~~~~~~~~~~~iFPNl~l~~~---------~~----~l~v~~~~P~gpd~t~~~~~~~~~~----~~~~e 148 (222)
T cd08880 86 DPSLLDGRAEFDDDITLVIQSIFPSLVVQQI---------QN----TLAVRHIIPKGPDSFELVWTYFGYE----DDDEE 148 (222)
T ss_pred CHHHHhhhHhhcCCCceEEEEECCCEEEecc---------CC----cEEEEEEEecCCCeEEEEEEEEEec----CCCHH
Confidence 0 000011134567898876421 11 1223345899999999877443111 11111
Q ss_pred hhccchhhhhc--cc--cccccchhHHHHHhhHHHHhhhc
Q 009165 362 WWQVVPRWHEH--WT--SNKVYDGDMIVLQGQEKIFLSKL 397 (541)
Q Consensus 362 ~~~l~prw~~H--~~--~~~VldqD~~iL~~Qer~l~~~~ 397 (541)
.. ..|..+ .+ ...|.+||..+++.+|+++.+..
T Consensus 149 ~~---~~~~~~~~~~gp~g~v~~ED~ei~e~vQ~Gl~s~~ 185 (222)
T cd08880 149 MT---RLRLRQANLVGPAGFVSMEDGEAIEFVQRGVEGDG 185 (222)
T ss_pred HH---HHHHHHhcccCCcCCCccchHHHHHHhCchhcCCC
Confidence 11 111111 11 24688999999999999987643
No 57
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=98.30 E-value=1.5e-05 Score=77.68 Aligned_cols=187 Identities=17% Similarity=0.275 Sum_probs=96.0
Q ss_pred CCCCCCCCCcceeeEEEEeecchhhHhhhcCCCCcccccccccc-----------cCcCCCCCccEEE--EecCcccee-
Q 009165 224 LPDAFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVT-----------GRRDRAKPLPFKL--ESSGHWGFA- 289 (541)
Q Consensus 224 ~p~~~~~~~~~~~~~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~-----------g~~~~~~~~~~~v--~~~~~~gf~- 289 (541)
+|+.+.+++.......+.+.+||...+||.+|+.|+ |+|..+. |-+....-...++ +..++-|+.
T Consensus 14 lP~~fld~~~~~~g~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG~~p~d~~~~t~~v~d~~gPKG~~~ 92 (240)
T PF11723_consen 14 LPPGFLDDDIVIFGMHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLGFRPTDSDGMTKVVEDEDGPKGVMD 92 (240)
T ss_dssp S-TTTTSTTEEEEEEEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SEEEESSCCCEEEEEC-STSS-EEEE
T ss_pred CCccccCCcceEEeeeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccccccCCcccceEEEecCCCCceeee
Confidence 444566666666666789999999999999999998 9999742 2111000000011 111222211
Q ss_pred -----------eccCCC--------Cc---ee-EEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEE
Q 009165 290 -----------GANDGN--------PR---IS-AKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIV 346 (541)
Q Consensus 290 -----------~~~~~~--------~~---~~-~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~ 346 (541)
+...+. +. .. ..+.++++.... .| .+. +...-..||++..+.|++-
T Consensus 93 ~~~~~~~pi~e~~i~g~~~~~~~~~~~~~~~~iSiwlPgVL~V~~------~P--~p~---~~qyEwYVPID~~~h~Y~q 161 (240)
T PF11723_consen 93 RLTEHYEPIFENEIDGEKVRNGNTNPVAVAMRISIWLPGVLMVEN------WP--YPD---FTQYEWYVPIDEDTHRYFQ 161 (240)
T ss_dssp -CHHHEEEESEEEETTEEEEE-BESSBE--SEEEEETTTEEEEES-------S--STT---EEEEEEEEEEETTEEEEEE
T ss_pred cccccceEEEecccCCceeecCCCCCceeEEEeeEeccceeeccc------CC--CCC---eeEEEEEEEecccceeeEe
Confidence 000000 00 01 223333332211 11 121 1111234899999999987
Q ss_pred EeeccccccCCCCcchh-ccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHH
Q 009165 347 CSARNFFQFTMPGPAWW-QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAF 425 (541)
Q Consensus 347 ~~~Rnf~~~~~p~~~~~-~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~Vvaf 425 (541)
...+.--.. ....++. +.--+|... .-+.++++|+-..+++|+...+.. .|.+- ...++|..++++
T Consensus 162 ~l~~~~~t~-ee~~~f~~~f~~~~~~~-~l~gFN~~D~wAREamq~fY~d~~---------Gw~~E--~L~~~D~sIi~W 228 (240)
T PF11723_consen 162 LLGKVCPTE-EERKAFEYEFEEQWKPL-ALHGFNDDDIWAREAMQPFYADDT---------GWDRE--QLFEPDKSIIAW 228 (240)
T ss_dssp EEEEE-SSH-HHHHHHHHHHHHTHHHH-TTTTTTHHHHHHHHHHHHHHHTSH---------HHHH------GGGHHHHHH
T ss_pred EEeeecCCH-HHHHHHHHHHHHHhHHh-hccCCCchhHHHHHHhhhhhhccC---------CCCHH--HhcCcchhHHHH
Confidence 655432100 0001111 222334332 457889999999999998876521 24332 345789999999
Q ss_pred HHHHHHhcCC
Q 009165 426 RNWLRRHGNS 435 (541)
Q Consensus 426 RrWl~~~~~g 435 (541)
||...++..|
T Consensus 229 RkLas~~nrg 238 (240)
T PF11723_consen 229 RKLASEHNRG 238 (240)
T ss_dssp HHHHHHH-SE
T ss_pred HHHHHHhhcc
Confidence 9999999765
No 58
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.06 E-value=1.1e-05 Score=77.02 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=51.1
Q ss_pred eEEEEccCCCCCCCCccc-cccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEE
Q 009165 128 KWVAFDDKCPHRLAPLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (541)
Q Consensus 128 ~~~a~~d~CpHRga~Ls~-G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV 206 (541)
+|.|+...|.|.|+.... +... .+.+.||+||.+||.+|+.++.|.. ..|..++++..++-+++
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~~-~~~~~CPCHGS~yd~~g~vv~GPA~--------------~~L~~~~~~~~~d~~~~ 164 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAGA-EGGFFCPCHGSRYDPDGGVVKGPAP--------------RPLPIPPLEYDSDKLYL 164 (177)
T ss_pred cEEEEeeeccCCCCccCcccCCC-CCeEEccCCCCeEcCCCCeeCCCCC--------------CCcCCceEEEeCCceEE
Confidence 577999999999999988 4443 5899999999999999997776543 34788888887774443
No 59
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=97.60 E-value=0.00017 Score=70.53 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=26.7
Q ss_pred EEEeecchhhHhhhcC-CCCcccccccccc
Q 009165 239 QRDLFYGYDTLMENVS-DPSHIDFAHHKVT 267 (541)
Q Consensus 239 ~~d~~~~~~~~~EN~l-D~~H~~~~H~~~~ 267 (541)
...++||||.++||++ |.||++++|..++
T Consensus 10 ~~~~~~NWK~~~en~~~d~yH~~~~H~~~~ 39 (206)
T cd08881 10 KWVIKANWKLAAENFAGDGYHTGTTHASAL 39 (206)
T ss_pred EEEecCcceehhhccccccccchhhhHHHH
Confidence 4678999999999999 9999999999875
No 60
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=97.57 E-value=8e-05 Score=70.58 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=56.9
Q ss_pred cCCCCCCCcEEEEECCeEEEEE--------------------------EeCCCCeEEEEccCCCCCCCCccccccCCCCe
Q 009165 100 VEDLDPNLPTAFQLLGRDLVLW--------------------------FDNNSNKWVAFDDKCPHRLAPLSEGRIDENGH 153 (541)
Q Consensus 100 ~~dL~~g~~~~~~l~g~~lvl~--------------------------r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~ 153 (541)
+.++++|+-.+++..|+++++- |. ++-+|.++..+|.|-|+-.-....+ .|.
T Consensus 92 l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rv-k~~ewl~~igVCThLGCVp~~~AGd-~gg 169 (210)
T KOG1671|consen 92 LSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRV-KKPEWLVVIGVCTHLGCVPIANAGD-YGG 169 (210)
T ss_pred eecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhc-cCcceEEEEeeeccccccccccccc-cCc
Confidence 4566667777777777777662 44 4567899999999999966544443 578
Q ss_pred EEcccCceEEcCCCCccccCCC
Q 009165 154 LQCSYHGWSFDGCGSCTRIPQA 175 (541)
Q Consensus 154 l~CpyHGW~Fd~~G~c~~iP~~ 175 (541)
.-||+||..||..|+..+.|..
T Consensus 170 ~~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 170 YYCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred eecccccccccccCceecCCCC
Confidence 9999999999999999998853
No 61
>cd08879 RHO_alpha_C_AntDO-like C-terminal catalytic domain of the oxygenase alpha subunit of Pseudomonas resinovorans strain CA10 anthranilate 1,2-dioxygenase and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of anthranilate 1,2-dioxygenase (AntDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are
Probab=97.56 E-value=0.00019 Score=71.63 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=26.7
Q ss_pred EEEeecchhhHhhhcCCCCcccccccccc
Q 009165 239 QRDLFYGYDTLMENVSDPSHIDFAHHKVT 267 (541)
Q Consensus 239 ~~d~~~~~~~~~EN~lD~~H~~~~H~~~~ 267 (541)
.+.++||||..+||+.|.||++++|..++
T Consensus 5 ~~~~~~nWK~~~en~~d~yH~~~~H~~~~ 33 (237)
T cd08879 5 RYRYRGNWKLQLENGTDGYHPPFVHASYV 33 (237)
T ss_pred EEEeeceEEEEeeecCccccCccccHHHH
Confidence 45789999999999999999999999976
No 62
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=97.53 E-value=0.00019 Score=73.30 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCeEEEEccCCCCCCCCcccc------cc--------------------C-C---CCeEEcccCceEEcCC--CCccccC
Q 009165 126 SNKWVAFDDKCPHRLAPLSEG------RI--------------------D-E---NGHLQCSYHGWSFDGC--GSCTRIP 173 (541)
Q Consensus 126 ~g~~~a~~d~CpHRga~Ls~G------~v--------------------~-~---~g~l~CpyHGW~Fd~~--G~c~~iP 173 (541)
++.+.||...|+|.|++++.- .+ + + .+.+.||+||.+||.+ |+.+..|
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~GP 254 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLTGP 254 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeCCC
Confidence 478999999999999988331 10 0 0 1389999999999994 4677655
Q ss_pred CCCCCCchhhccCCCCCCceeEEEEEE--cCeEEEec
Q 009165 174 QAASEGPEARAIQSPRACATRFPTMVS--QGLLFVWP 208 (541)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~pv~~~--~G~vwV~~ 208 (541)
.. ..|..+++++. +|.|++--
T Consensus 255 A~--------------rpLp~i~l~~d~~~~~l~AvG 277 (321)
T TIGR03171 255 TV--------------RPLPAVILEWDSSTDYLYAIG 277 (321)
T ss_pred CC--------------CCCCcceEEEeCCCCeEEEEe
Confidence 32 24667777775 56677643
No 63
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.37 E-value=0.0088 Score=64.37 Aligned_cols=39 Identities=33% Similarity=0.665 Sum_probs=34.4
Q ss_pred CCCCCccccccCCCCeEEcccCceEEcC-CCCccccCCCCC
Q 009165 138 HRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTRIPQAAS 177 (541)
Q Consensus 138 HRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~iP~~~~ 177 (541)
|.||||..|-. ..|+++||+||-+|+. +|...+-|....
T Consensus 1 hygapl~~g~~-s~g~v~cpwhgacfn~~~gdiedfP~~~s 40 (478)
T KOG1336|consen 1 HYGAPLAKGVL-SRGRVRCPWHGACFNLSTGDIEDFPGLDS 40 (478)
T ss_pred CCCcchhhccc-cCCcccccccceeecCCcCchhhCcCccc
Confidence 89999999955 5899999999999999 799998887654
No 64
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=73.90 E-value=9.2 Score=33.01 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=20.0
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHHHHHHHH
Q 009165 460 DRFEQHTLKCSSCREAYSAFQTGQKFLIGATV 491 (541)
Q Consensus 460 dRy~~HT~~C~sC~~Al~~~~~~~~~~~~~~v 491 (541)
|+|+..-+...+|++-++.++.+..++.++++
T Consensus 2 ~~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a 33 (112)
T PF14015_consen 2 EQIDWYDKKARRAQRRYRRLRIASIILSVLGA 33 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566777777777777777554433
No 65
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=71.57 E-value=2.8 Score=28.75 Aligned_cols=16 Identities=50% Similarity=0.939 Sum_probs=13.0
Q ss_pred hHHHHhhhcCChhhHH
Q 009165 459 LDRFEQHTLKCSSCRE 474 (541)
Q Consensus 459 ldRy~~HT~~C~sC~~ 474 (541)
-.+...|..+|++|+.
T Consensus 21 ~~~~~~HL~~C~~C~~ 36 (36)
T PF13490_consen 21 RARLEAHLASCPSCRE 36 (36)
T ss_dssp HHHHHHHHCT-HHHHH
T ss_pred HHHHHHHHHcCHHhcC
Confidence 4688999999999984
No 66
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=66.23 E-value=9 Score=31.87 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=23.2
Q ss_pred hHHHHhhhcCChhhHHHHHHHHHHHHHH
Q 009165 459 LDRFEQHTLKCSSCREAYSAFQTGQKFL 486 (541)
Q Consensus 459 ldRy~~HT~~C~sC~~Al~~~~~~~~~~ 486 (541)
-.+++.|...|+.|+..+...+.++.++
T Consensus 29 ~~~~e~HL~~C~~C~~e~~~~~~~~~~L 56 (84)
T TIGR02949 29 REQLRRHLEACPECLEEYGLEQAVKKLL 56 (84)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998766665544
No 67
>PF07627 PSCyt3: Protein of unknown function (DUF1588); InterPro: IPR013039 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013042 from INTERPRO and IPR013043 from INTERPRO.
Probab=62.67 E-value=11 Score=32.77 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCCCcccchhHHhHHHHhhh--cCChhhHHHH
Q 009165 426 RNWLRRHGNSQPEWFGFSSQQPSPSTVLSKCQMLDRFEQHT--LKCSSCREAY 476 (541)
Q Consensus 426 RrWl~~~~~g~p~w~~~~~~~~lP~~~~~~e~lldRy~~HT--~~C~sC~~Al 476 (541)
-+|+.+.--+++.......-..+++......-+=+|++.|+ ..|.+|=+-+
T Consensus 27 G~~v~~~lLc~~~ppPP~~v~~~~~~~~~~~T~Re~~~~h~~~~~Ca~CH~~i 79 (101)
T PF07627_consen 27 GVWVRERLLCQPPPPPPPNVPALPPDPPDQLTNRERLEQHTENPACASCHRKI 79 (101)
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHhhcCCCcHHHHhhhh
Confidence 35777776555433221111123333223335778889999 6799997744
No 68
>PRK10853 putative reductase; Provisional
Probab=61.94 E-value=5.3 Score=35.50 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=15.1
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~t~rkA~~~L~~ 22 (118)
T PRK10853 6 GIKNCDTIKKARRWLEA 22 (118)
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 67899999999999975
No 69
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=58.76 E-value=6.1 Score=34.80 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=14.9
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|..+|++|++|++.++.
T Consensus 6 ~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 6 EKPGCANNARQKALLEA 22 (113)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999865
No 70
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=58.71 E-value=5.6 Score=34.92 Aligned_cols=35 Identities=23% Similarity=0.546 Sum_probs=23.1
Q ss_pred CeEEEEccCCCCCCCCccccccCC-CCeEEcccCceEEc
Q 009165 127 NKWVAFDDKCPHRLAPLSEGRIDE-NGHLQCSYHGWSFD 164 (541)
Q Consensus 127 g~~~a~~d~CpHRga~Ls~G~v~~-~g~l~CpyHGW~Fd 164 (541)
|+.--..-.| .|||..|.+-. .+.+.||+||=--+
T Consensus 63 g~~e~v~~~C---rAPL~~G~LC~RrD~~kCPfHG~IIp 98 (110)
T PF09740_consen 63 GEFEPVPHAC---RAPLPNGGLCPRRDRKKCPFHGKIIP 98 (110)
T ss_pred CccCcCchhh---cCCCCCCCcCCccCcccCCCCCcccC
Confidence 4444444456 47888888763 35789999985443
No 71
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=58.55 E-value=6.2 Score=34.54 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.5
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|++|++|++.++.-
T Consensus 5 ~~~~C~t~rkA~~~L~~~ 22 (112)
T cd03034 5 HNPRCSKSRNALALLEEA 22 (112)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 568999999999998763
No 72
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=56.65 E-value=6.7 Score=34.02 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=14.0
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|++|++|++.++.-
T Consensus 2 ~~~~C~t~rka~~~L~~~ 19 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEEN 19 (110)
T ss_dssp E-TT-HHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHc
Confidence 567999999999999764
No 73
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=56.06 E-value=7.4 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.599 Sum_probs=15.8
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|.+|++|++.++.-
T Consensus 7 ~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 7 GNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999763
No 74
>PRK10026 arsenate reductase; Provisional
Probab=54.57 E-value=7.8 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.511 Sum_probs=14.9
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|-.+|++|++|++.++.
T Consensus 8 ~~p~Cst~RKA~~wL~~ 24 (141)
T PRK10026 8 HNPACGTSRNTLEMIRN 24 (141)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56799999999999865
No 75
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=53.94 E-value=8.4 Score=33.38 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=14.9
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|..+|++|++|++.++.
T Consensus 5 ~~~~C~~crka~~~L~~ 21 (105)
T cd03035 5 GIKNCDTVKKARKWLEA 21 (105)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 56799999999999875
No 76
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=52.07 E-value=8.7 Score=34.78 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=25.6
Q ss_pred EccCCCCCCCCccccccCCCCeEEcccCceEEcC
Q 009165 132 FDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (541)
Q Consensus 132 ~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~ 165 (541)
++..||--|+||.+ .+|.+.||-||-++..
T Consensus 27 L~~hCp~Cg~PLF~----KdG~v~CPvC~~~~~~ 56 (131)
T COG1645 27 LAKHCPKCGTPLFR----KDGEVFCPVCGYREVV 56 (131)
T ss_pred HHhhCcccCCccee----eCCeEECCCCCceEEE
Confidence 56789999999998 2689999999987764
No 77
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=51.30 E-value=9.5 Score=33.49 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=15.3
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|-.+|++|++|++.++.-
T Consensus 5 ~~~~C~t~rkA~~~L~~~ 22 (114)
T TIGR00014 5 HNPRCSKSRNTLALLEDK 22 (114)
T ss_pred ECCCCHHHHHHHHHHHHC
Confidence 567999999999998753
No 78
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.53 E-value=11 Score=34.13 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=15.2
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|..+|++|++|++.++.
T Consensus 6 ~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 6 TISSCTSCKKAKTWLNA 22 (132)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 67899999999999875
No 79
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=46.46 E-value=13 Score=32.46 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.1
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|...|++|++|.+.++.
T Consensus 5 ~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 5 EYPKCSTCRKAKKWLDE 21 (111)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 56799999999999976
No 80
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=44.52 E-value=14 Score=33.20 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=14.7
Q ss_pred hhcCChhhHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQT 481 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~ 481 (541)
|-.+|++|++|++.++.
T Consensus 7 ~~p~Cst~RKA~~~L~~ 23 (126)
T TIGR01616 7 EKPGCANNARQKAALKA 23 (126)
T ss_pred eCCCCHHHHHHHHHHHH
Confidence 45799999999999964
No 81
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.13 E-value=18 Score=32.65 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.2
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|++|++|++.++.-
T Consensus 6 ~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 6 TTASCASCRKAKAWLEEN 23 (131)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999998653
No 82
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=38.88 E-value=20 Score=31.39 Aligned_cols=18 Identities=33% Similarity=0.582 Sum_probs=15.4
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|+.|++|++.++..
T Consensus 6 ~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 6 TSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred eCCCCHHHHHHHHHHHHC
Confidence 567999999999999763
No 83
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.32 E-value=23 Score=31.96 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.4
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|+.|++|++.++.-
T Consensus 6 ~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999999763
No 84
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=36.29 E-value=23 Score=30.25 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.1
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|..+|++|++|++.++..
T Consensus 5 ~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 5 GNPNCSTSRKALAWLEEH 22 (105)
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 456899999999998764
No 85
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=35.44 E-value=24 Score=30.87 Aligned_cols=18 Identities=17% Similarity=0.556 Sum_probs=15.4
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|...|++|++|++.++.-
T Consensus 5 ~~~~C~~c~ka~~~L~~~ 22 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEAN 22 (117)
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 567899999999999763
No 86
>COG5660 Predicted integral membrane protein [Function unknown]
Probab=31.60 E-value=52 Score=32.25 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.3
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|-++|++|+.-+..+..+
T Consensus 30 HL~nCsaCR~~y~~vAel 47 (238)
T COG5660 30 HLGNCSACRAWYDQVAEL 47 (238)
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 999999999998777543
No 87
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=29.39 E-value=14 Score=31.25 Aligned_cols=51 Identities=20% Similarity=0.280 Sum_probs=38.9
Q ss_pred cccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcc
Q 009165 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS 144 (541)
Q Consensus 89 ~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls 144 (541)
++...||.+.. ++|+...++.+|+.+...+. .......|..+-|++|...+
T Consensus 4 dl~g~WYVLe~----~pGEHLvlealgqrls~iWt-S~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 4 DLSGTWYVLED----EPGEHLVLEALGQRLSGIWT-SRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp -TSSSEEEEES----STT-BEEEEETTEEEEEEBS-SHHHHHHHHHTSTSS--EEE
T ss_pred CcccceEEecC----CCCceeeHHHHhhhHHhhee-cHHHHHHHHHhCcccCcEee
Confidence 45778999866 58999999999999999888 55667888889998877543
No 88
>PRK00420 hypothetical protein; Validated
Probab=28.87 E-value=42 Score=29.67 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=26.0
Q ss_pred EccCCCCCCCCccccccCCCCeEEcccCceEEcC
Q 009165 132 FDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (541)
Q Consensus 132 ~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~ 165 (541)
+...||--|.||..-+ +|..+||-||-.+..
T Consensus 22 l~~~CP~Cg~pLf~lk---~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 22 LSKHCPVCGLPLFELK---DGEVVCPVHGKVYIV 52 (112)
T ss_pred ccCCCCCCCCcceecC---CCceECCCCCCeeee
Confidence 6789999999998752 578999999987765
No 89
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=28.18 E-value=2.6e+02 Score=24.27 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCCCCcEEEEE--CC--eEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC
Q 009165 103 LDPNLPTAFQL--LG--RDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 165 (541)
Q Consensus 103 L~~g~~~~~~l--~g--~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~ 165 (541)
|.+|+.+.+.. .| .++++++. .+|.+++--|.|-=-+ ..|...+++.|+|-.-|=+|..
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~-~dg~~~va~daCeiC~---~~GY~q~g~~lvC~~C~~~~~~ 64 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKK-PDGSYRVAFDACEICG---PKGYYQEGDQLVCKNCGVRFNL 64 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEEC-CCCCEEEEEEeccccC---CCceEEECCEEEEecCCCEEeh
Confidence 44555555443 44 35677777 6899999999885331 1355555789999999999985
No 90
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=26.61 E-value=44 Score=26.23 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=14.4
Q ss_pred hcCChhhHHHHHHHHHH
Q 009165 466 TLKCSSCREAYSAFQTG 482 (541)
Q Consensus 466 T~~C~sC~~Al~~~~~~ 482 (541)
...|+.|++|.+.++..
T Consensus 8 ~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 8 RLGCEDCTAVRLFLREK 24 (73)
T ss_pred cCCChhHHHHHHHHHHC
Confidence 46799999999998864
No 91
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=24.71 E-value=14 Score=36.14 Aligned_cols=15 Identities=53% Similarity=1.028 Sum_probs=0.0
Q ss_pred HHHhhhcCChhhHHH
Q 009165 461 RFEQHTLKCSSCREA 475 (541)
Q Consensus 461 Ry~~HT~~C~sC~~A 475 (541)
+-+||+++|.||..|
T Consensus 95 k~~QHVVKC~~CnEA 109 (275)
T KOG4684|consen 95 KNQQHVVKCHSCNEA 109 (275)
T ss_pred ccceeeEeecccCcc
No 92
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=21.56 E-value=5e+02 Score=21.94 Aligned_cols=36 Identities=6% Similarity=0.022 Sum_probs=23.9
Q ss_pred HHhHHHHhhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 009165 457 QMLDRFEQHTLKCSSCREAYSAFQTGQKFLIGATVA 492 (541)
Q Consensus 457 ~lldRy~~HT~~C~sC~~Al~~~~~~~~~~~~~~v~ 492 (541)
+.++.|...-.+|..+-..++.+..+-.++.++..+
T Consensus 2 ~~~~~y~~~a~~~q~~~~~~~~~~i~~~~~~a~i~~ 37 (112)
T PF14015_consen 2 EQIDWYDKKARRAQRRYRRLRIASIILSVLGAVIPV 37 (112)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777776555444333
No 93
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=21.40 E-value=1.8e+02 Score=19.82 Aligned_cols=30 Identities=20% Similarity=0.467 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCcccchhHHhHHHHhh
Q 009165 421 LVLAFRNWLRRHGNSQPEWFGFSSQQPSPSTVLSKCQMLDRFEQH 465 (541)
Q Consensus 421 ~VvafRrWl~~~~~g~p~w~~~~~~~~lP~~~~~~e~lldRy~~H 465 (541)
-+.+.|.++++++- |.. -+|.+|.+|...|
T Consensus 5 ~v~eLk~~l~~~gL--------------~~~-G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 5 TVAELKEELKERGL--------------STS-GKKAELIERLKEH 34 (35)
T ss_dssp HHHHHHHHHHHTTS---------------ST-SSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCC--------------CCC-CCHHHHHHHHHHh
Confidence 36788999999873 322 3799999999877
No 94
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=20.15 E-value=68 Score=23.08 Aligned_cols=29 Identities=31% Similarity=0.859 Sum_probs=22.8
Q ss_pred EEEEccCCCCCCCCccccccCCCCeEEcccCc
Q 009165 129 WVAFDDKCPHRLAPLSEGRIDENGHLQCSYHG 160 (541)
Q Consensus 129 ~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHG 160 (541)
|.-++..||.=+.||-+.+ +|.+.|+-++
T Consensus 13 ~~ML~~~Cp~C~~PL~~~k---~g~~~Cv~C~ 41 (41)
T PF06677_consen 13 WTMLDEHCPDCGTPLMRDK---DGKIYCVSCG 41 (41)
T ss_pred HhHhcCccCCCCCeeEEec---CCCEECCCCC
Confidence 5567889999999998843 5688998764
Done!