Query 009165
Match_columns 541
No_of_seqs 345 out of 2148
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 2.6E-52 8.9E-57 435.7 26.5 311 89-434 4-336 (349)
2 2de6_A Terminal oxygenase comp 100.0 1.9E-44 6.6E-49 382.0 24.5 315 83-436 18-376 (392)
3 1z01_A 2-OXO-1,2-dihydroquinol 100.0 1.7E-43 5.9E-48 380.4 32.1 325 84-439 34-411 (446)
4 2zyl_A Possible oxidoreductase 100.0 2.7E-44 9.3E-49 379.9 23.8 313 85-434 17-338 (386)
5 3n0q_A Putative aromatic-ring 100.0 1.7E-41 5.7E-46 360.1 22.5 317 78-434 26-398 (409)
6 3gcf_A Terminal oxygenase comp 100.0 9.3E-41 3.2E-45 348.9 27.4 317 83-435 24-379 (394)
7 3vca_A Ring-hydroxylating diox 100.0 3.7E-41 1.3E-45 357.8 21.5 317 78-434 28-401 (412)
8 3gkq_A Terminal oxygenase comp 100.0 1.4E-39 4.9E-44 339.1 26.7 316 84-435 22-376 (389)
9 2gbw_A Biphenyl 2,3-dioxygenas 100.0 2E-34 6.8E-39 310.7 16.5 187 77-268 21-217 (454)
10 2b1x_A Naphthalene dioxygenase 100.0 2.2E-33 7.5E-38 303.8 18.9 187 77-268 29-226 (470)
11 3gzx_A Biphenyl dioxygenase su 100.0 2.2E-34 7.6E-39 309.1 6.9 189 77-268 41-244 (457)
12 2bmo_A Oxygenase-alpha NBDO; n 100.0 2.4E-34 8.3E-39 309.5 6.6 189 75-268 18-216 (447)
13 1uli_A Biphenyl dioxygenase la 100.0 6.4E-32 2.2E-36 291.5 7.1 185 77-267 39-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 2.5E-26 8.6E-31 198.0 13.5 101 92-209 2-103 (103)
15 2i7f_A Ferredoxin component of 99.9 2.3E-26 8E-31 200.0 11.0 102 93-211 3-106 (108)
16 3dqy_A Toluene 1,2-dioxygenase 99.9 2.2E-26 7.6E-31 199.4 10.8 102 93-211 1-103 (106)
17 1fqt_A Rieske-type ferredoxin 99.9 4.8E-26 1.7E-30 199.3 12.9 103 92-211 4-108 (112)
18 2de6_D Ferredoxin component of 99.9 3.4E-26 1.2E-30 201.4 11.6 103 92-211 3-107 (115)
19 1vm9_A Toluene-4-monooxygenase 99.9 6E-26 2.1E-30 198.3 12.9 102 93-211 1-104 (111)
20 2jo6_A Nitrite reductase [NAD( 99.9 7.4E-26 2.5E-30 198.4 12.2 102 92-209 5-112 (113)
21 3gce_A Ferredoxin component of 99.9 1.2E-25 4.1E-30 199.6 12.9 102 93-211 10-114 (121)
22 2jza_A Nitrite reductase [NAD( 99.9 1.1E-25 3.6E-30 202.5 12.2 105 92-212 2-112 (130)
23 3c0d_A Putative nitrite reduct 99.9 1.1E-25 3.7E-30 199.3 11.3 104 92-211 4-112 (119)
24 4aiv_A Probable nitrite reduct 99.9 6.8E-26 2.3E-30 200.6 9.0 102 92-209 8-116 (119)
25 3d89_A Rieske domain-containin 99.9 1.4E-25 4.7E-30 208.1 7.7 117 90-211 13-136 (157)
26 1rie_A Rieske iron-sulfur prot 99.8 1.9E-20 6.4E-25 168.0 10.8 97 93-206 5-128 (129)
27 1rfs_A Rieske protein; iron-su 99.8 1.4E-20 4.9E-25 170.8 8.1 102 91-209 19-124 (139)
28 1g8k_B Arsenite oxidase; molyb 99.8 1.1E-19 3.9E-24 163.7 10.9 98 93-207 7-119 (133)
29 3azc_A Cytochrome B6-F complex 99.6 2E-20 6.9E-25 168.1 0.0 101 93-210 15-120 (133)
30 4aay_B AROB; oxidoreductase, r 99.8 8E-19 2.7E-23 165.0 9.0 100 93-208 50-162 (175)
31 1pp9_E Ubiquinol-cytochrome C 99.7 4.5E-17 1.6E-21 155.7 10.2 95 97-206 75-195 (196)
32 3cx5_E Cytochrome B-C1 complex 99.7 1E-16 3.5E-21 152.1 12.3 97 92-206 61-184 (185)
33 2qjy_C Ubiquinol-cytochrome C 99.7 7.5E-17 2.6E-21 153.3 11.3 98 94-206 49-186 (187)
34 2nwf_A Ubiquinol-cytochrome C 99.7 6.7E-17 2.3E-21 146.8 10.0 94 98-206 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 1E-16 3.4E-21 149.4 8.4 69 128-211 79-149 (165)
36 1vf5_D Rieske iron-sulfur prot 99.6 3.1E-17 1.1E-21 155.1 0.2 92 100-208 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 2.6E-16 8.7E-21 151.4 -0.0 101 93-208 35-166 (204)
38 3hug_B Probable conserved memb 56.6 5.8 0.0002 33.5 2.5 29 459-487 44-72 (108)
39 3fz4_A Putative arsenate reduc 44.2 9.3 0.00032 32.6 1.9 18 465-482 9-26 (120)
40 3f0i_A Arsenate reductase; str 42.1 11 0.00036 32.2 1.9 18 465-482 10-27 (119)
41 3gkx_A Putative ARSC family re 40.2 11 0.00039 32.0 1.8 18 465-482 10-27 (120)
42 3rdw_A Putative arsenate reduc 37.5 13 0.00044 31.7 1.7 18 465-482 11-28 (121)
43 2q1z_B Anti-sigma factor CHRR, 36.5 21 0.00071 33.0 3.1 27 460-486 26-52 (195)
44 3l78_A Regulatory protein SPX; 34.0 17 0.00057 30.8 1.9 18 465-482 6-23 (120)
45 1rw1_A Conserved hypothetical 33.8 17 0.00058 30.4 1.9 18 465-482 6-23 (114)
46 1s3c_A Arsenate reductase; ARS 33.7 17 0.00058 31.9 1.9 18 465-482 8-25 (141)
47 2kok_A Arsenate reductase; bru 31.7 19 0.00066 30.3 1.9 18 465-482 11-28 (120)
48 1z3e_A Regulatory protein SPX; 21.9 36 0.0012 29.1 1.8 18 465-482 7-24 (132)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=2.6e-52 Score=435.72 Aligned_cols=311 Identities=21% Similarity=0.328 Sum_probs=237.7
Q ss_pred cccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCC
Q 009165 89 SWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (541)
Q Consensus 89 ~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~ 168 (541)
.+++.||+||.++|| +|+++.++++|++|||||+ .+|+++||+|+|||||++|+.|+++ ++.|+||||||+||.+|+
T Consensus 4 ~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~CpHrg~~L~~G~~~-~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 4 FVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQ-PDGVVAALLDICPHRFAPLSDGILV-NGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCGGGCEEE-TTEEECTTTCCEECTTCC
T ss_pred ccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEc-CCCcEEEEeCcCCCCCcCCccCCcc-ceEEEECCCCCEEcCCCC
Confidence 568999999999999 8999999999999999998 7999999999999999999999996 689999999999999999
Q ss_pred ccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEEEEeecchhh
Q 009165 169 CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRDLFYGYDT 248 (541)
Q Consensus 169 c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~d~~~~~~~ 248 (541)
|+.+|+.... .+.+.++++|||++++|+||||+++++. ++...+|.++ ++++++|......++++|||++
T Consensus 81 ~~~~P~~~~~-------~~~~~~l~~~~v~~~~G~V~v~~~~~~~--~~~~~~p~~~-~~~~~~~~~~~~~~~~~~nwk~ 150 (349)
T 3gke_A 81 CVHNPHGNGA-------RPASLNVRSFPVVERDALIWIWPGDPAL--ADPGAIPDFG-CRVDPAYRTVGGYGHVDCNYKL 150 (349)
T ss_dssp EEECCSTTCC-------CCGGGCCCBCCEEEETTEEEECCSCGGG--CCGGGSCCCG-GGGCTTSEEEEEEEEESSCHHH
T ss_pred ccccCccccc-------cccccccceeeEEEECCEEEEeeCCCCC--CcccccCCcc-ccCCCCCEEEeEEEEEecCHHh
Confidence 9999962211 1345789999999999999999987642 1222345565 5666777766667899999999
Q ss_pred HhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeec---------------c---CCC-Cc-eeEEEecceee
Q 009165 249 LMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGA---------------N---DGN-PR-ISAKFVAPCYY 308 (541)
Q Consensus 249 ~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~---------------~---~~~-~~-~~~~f~~P~~~ 308 (541)
++||++|+||++|+|++++|.++.... +++++.. ..++... . .+. .+ ..++|.+||.+
T Consensus 151 ~~EN~~D~~H~~~~H~~~~~~~~~~~~-~~~v~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~P~~~ 228 (349)
T 3gke_A 151 LVDNLMDLGHAQYVHRANAQTDAFDRL-EREVIVG-DGEIQALMKIPGGTPSVLMAKFLRGANTPVDAWNDIRWNKVSAM 228 (349)
T ss_dssp HHHHHHCGGGHHHHTHHHHCCTTGGGC-EEEEEEC-SSEEEEEEEEEEECCCHHHHHHTTTCCSCEEEEEEEEEETTTEE
T ss_pred HHHhccccccchhccchhhcCccccCC-CCEEEEc-CCEEEEEEEecCCCCChHHHhhcccCCCCceeEEEEEEECCEEE
Confidence 999999999999999999998765422 2344432 1222110 0 111 11 24789999997
Q ss_pred eEEEEE-cccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhcccccccc-chhHHHH
Q 009165 309 MNKIEI-DTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVY-DGDMIVL 386 (541)
Q Consensus 309 ~~~~~~-~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~Vl-dqD~~iL 386 (541)
..++.+ ..+.| ......+++++++||+++++||++|.++|||.. .++ .+.+.|.. +++.|| +||+.||
T Consensus 229 ~~~~~~~~~g~p--~~~~~~~~~~~~~tP~s~~~tr~~~~~~rn~~~---~d~---~~~~~~~~--~~~~if~~ED~~il 298 (349)
T 3gke_A 229 LNFIAVAPEGTP--KEQSIHSRGTHILTPETEASCHYFFGSSRNFGI---DDP---EMDGVLRS--WQAQALVKEDKVVV 298 (349)
T ss_dssp EEEEEEEETTSC--GGGSEEEEEEEEEEEEETTEEEEEEEEEESSST---TCH---HHHHHHHH--HHHHHTTTHHHHHH
T ss_pred EEEEecccCCCC--CCCceEEEEEEEEecCCCCeEEEEEEEEecCcc---Cch---hhhHHHHH--HHhhhhhhhhHHHH
Confidence 765543 12222 122344667788999999999999999999842 111 23345554 467888 9999999
Q ss_pred HhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcC
Q 009165 387 QGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGN 434 (541)
Q Consensus 387 ~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~ 434 (541)
|.||+.+...+. ...+++++++|+++++|||||+++..
T Consensus 299 e~Qq~~l~~~~~----------~~~~~~~~~~D~~~v~~Rr~l~~l~~ 336 (349)
T 3gke_A 299 EAIERRRAYVEA----------NGIRPAMLSCDEAAVRVSREIEKLEQ 336 (349)
T ss_dssp HHHHHTHHHHHH----------TTCCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCc----------cccccccccccHHHHHHHHHHHHHHH
Confidence 999999876421 23346899999999999999999863
No 2
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=1.9e-44 Score=381.96 Aligned_cols=315 Identities=17% Similarity=0.296 Sum_probs=218.1
Q ss_pred cCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccC-CCCeEEcccCce
Q 009165 83 SSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID-ENGHLQCSYHGW 161 (541)
Q Consensus 83 ~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~-~~g~l~CpyHGW 161 (541)
-.|.+++|++.||+||.++||++|+++.++++|++|||||+ +|+++||+|+|||||++|+.|++. +++.|+||||||
T Consensus 18 ~~e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~--~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw 95 (392)
T 2de6_A 18 YVDAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRI--DGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAW 95 (392)
T ss_dssp HHHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCE
T ss_pred cchhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCC
Confidence 34678899999999999999998999999999999999996 899999999999999999999864 357999999999
Q ss_pred EEcC-CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEEE
Q 009165 162 SFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQR 240 (541)
Q Consensus 162 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 240 (541)
+||. +|+|+.+|+.+... .+++.+|++|||++++|+||||++++..+. ..+.+++++.++++.......
T Consensus 96 ~f~~~~G~~~~~p~~p~~~------~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~ 165 (392)
T 2de6_A 96 TYRWEDGVLCDILTNPTSA------QIGRQKLKTYPVQEAKGCVFIYLGDGDPPP----LARDTPPNFLDDDMEILGKNQ 165 (392)
T ss_dssp EEETTTCBEEEETTCTTCT------TTTSCBCCBCCEEEETTEEEEEESSSSCCC----GGGGSCTTTTCTTEEEEEEEE
T ss_pred EEcCCCCccccccCCcccc------ccccCCCceEeEEEECCEEEEEeCCCCCCC----hhHhccccccCCCeEEEEEEE
Confidence 9998 99999998754321 235678999999999999999997642111 112233355556666555567
Q ss_pred EeecchhhHhhhcCCCCcccccccccccCcCCCC-------------CccEEEEecC--ccceeecc------------C
Q 009165 241 DLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAK-------------PLPFKLESSG--HWGFAGAN------------D 293 (541)
Q Consensus 241 d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~-------------~~~~~v~~~~--~~gf~~~~------------~ 293 (541)
+++|||++++||++|+||+ |+|+++++..+... ...++++... ..|+.... .
T Consensus 166 ~~~~nwk~~~EN~~D~~H~-~~H~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~p~~~~~~~ 244 (392)
T 2de6_A 166 IIKSNWRLAVENGFDPSHI-YIHKDSILVKDNDLALPLGFAPGGDRKQQTRVVDDDVVGRKGVYDLIGEHGVPVFEGTIG 244 (392)
T ss_dssp EESSCHHHHHHHHHCGGGG-GGGTTCHHHHHTTBEECSEEECCSCGGGGEEEECCCTTCCCEEEECGGGTCEEECEEEET
T ss_pred EEecChHhhhHhcchhhhh-hhhcchhccccccccccccccccccccceEEeccCCccCCcceeeecCCccccccccccc
Confidence 8999999999999999999 99999875433211 1112222110 11211000 0
Q ss_pred ---------CC--CceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcc-
Q 009165 294 ---------GN--PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPA- 361 (541)
Q Consensus 294 ---------~~--~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~- 361 (541)
+. ......+..|+.+... . .| +.. +.++..++|+++++|++++.++|++.. ...
T Consensus 245 ~~~~~~~~~g~~~~~~~~~~~~P~~~~~~--~---~p--~~~---~~~~~~~~Pi~~~~t~~~~~~~~~~~~----~~~~ 310 (392)
T 2de6_A 245 GEVVREGAYGEKIVANDISIWLPGVLKVN--P---FP--NPD---MMQFEWYVPIDENTHYYFQTLGKPCAN----DEER 310 (392)
T ss_dssp TEEEEECEECSBCCCCEEEEETTTEEEEE--S---CS--STT---CEEEEEEEEEETTEEEEEEEEEEECSS----HHHH
T ss_pred cceeeccccCCcccceeEEEecccceecc--c---cC--CCC---EEEEEEEeecCCCcEEEEEEEecCCCC----HHHH
Confidence 00 0112345577765321 1 12 111 123345699999999999988887621 111
Q ss_pred --hh-ccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcCCC
Q 009165 362 --WW-QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNSQ 436 (541)
Q Consensus 362 --~~-~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~g~ 436 (541)
+. ++...|.. .....|++||+.+++.||+.+.... .|.+ .++.++|+++++|||||++++.+.
T Consensus 311 ~~~~~~~~~~~~~-~~~~~~~~qD~~i~e~qq~~~~~~~---------~~~~--e~~~~~D~~~~~~Rr~l~~~~~~~ 376 (392)
T 2de6_A 311 KKYEQEFESKWKP-MALEGFNNDDIWAREAMVDFYADDK---------GWVN--EILFESDEAIVAWRKLASEHNQGI 376 (392)
T ss_dssp HHHHHHHHHTHHH-HTTTTTTHHHHHHHHHTHHHHHTST---------HHHH--CCCCGGGHHHHHHHHHHHHHCSCB
T ss_pred HHHHHHHHHHHHH-hhccCCChhhHHHHHhhhhhhhccc---------cCcc--ceecchhHHHHHHHHHHHHHhhhh
Confidence 11 11112221 1235678999999999999775421 2332 234579999999999999998753
No 3
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=1.7e-43 Score=380.45 Aligned_cols=325 Identities=19% Similarity=0.252 Sum_probs=221.6
Q ss_pred CcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcccccc-CCCCeEEcccCceE
Q 009165 84 SDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGWS 162 (541)
Q Consensus 84 ~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v-~~~g~l~CpyHGW~ 162 (541)
.|.+++|++.||+||+++||++|+++.++++|++|||||. +|+++||+|+|||||++|+.|++ .+++.|+||||||+
T Consensus 34 ~e~~~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r~--~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~ 111 (446)
T 1z01_A 34 KDAAWGFINHWYPALFTHELEEDQVQGIQICGVPIVLRRV--NGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFT 111 (446)
T ss_dssp HHCTTCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEE
T ss_pred hhhhhhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeE
Confidence 6778899999999999999998999999999999999996 89999999999999999999985 24689999999999
Q ss_pred EcC-CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCc-----ccccccCCCCCCCC----------
Q 009165 163 FDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG-----QERANATKPPMLPD---------- 226 (541)
Q Consensus 163 Fd~-~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~-----~~~~~~~~~p~~p~---------- 226 (541)
||. +|+|+.+|+.+... .+.+.+|++|||++++|+||||+++++ .+...+..++.+++
T Consensus 112 fd~~~G~~~~~p~~p~~~------~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~ 185 (446)
T 1z01_A 112 FDLETGKLVTIVANPEDK------LIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLW 185 (446)
T ss_dssp EETTTCBEEEETTCTTCT------TTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCTTTTTTTSCCTTS
T ss_pred EeCCCCCccccCCCcccc------CcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchhhhhhhccccccc
Confidence 998 99999998754321 234678999999999999999998642 11111111112221
Q ss_pred ----CCCCCCcceeeEEEEeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEE----------e--cCccceee
Q 009165 227 ----AFDKPEFSSVTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLE----------S--SGHWGFAG 290 (541)
Q Consensus 227 ----~~~~~~~~~~~~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~----------~--~~~~gf~~ 290 (541)
.+.++++......++++|||++++||++|+||+ |+|+++++..+......+.+. . .+..|+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 264 (446)
T 1z01_A 186 PSSPSVLDDNAVVHGMHRTGFGNWRIACENGFDNAHI-LVHKDNTIVHAMDWVLPLGLLPTSDDCIAVVEDDDGPKGMMQ 264 (446)
T ss_dssp CCCCCTTSTTEEEEEEEEEEESCHHHHHTTTTCTTGG-GGGTTCHHHHHTTCCCCSEEEECSTTSEEEECCSSSCCEEEE
T ss_pred cccccccCCCeEEEeEEEEEcCCHHHHHHhccchhhh-hhhhhhhhcccccccccccccccCCCceeEEEecCCCCEEEE
Confidence 122344544444678999999999999999999 999998764332211111110 0 01122210
Q ss_pred c-------------------cCCCCc-eeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeec
Q 009165 291 A-------------------NDGNPR-ISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSAR 350 (541)
Q Consensus 291 ~-------------------~~~~~~-~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~R 350 (541)
. ..+... ....+.+|++++... .| ... +.++..++|+++++|++++.+++
T Consensus 265 ~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~~~~~P~~~~~~~-----~p--~~~---~~~~~~~~Pi~~~~t~~~~~~~~ 334 (446)
T 1z01_A 265 WLFTDKWAPVLENQELGLKVEGLKGRHYRTSVVLPGVLMVEN-----WP--EEH---VVQYEWYVPITDDTHEYWEILVR 334 (446)
T ss_dssp CTTSTTEEEECEETTTTEECCCCCCCCCEEEEETTTEEEEET-----CS--STT---CEEEEEEEESSSSEEEEEEEEEE
T ss_pred EecCccccchhhhhhhccccccCCceEEEeeeecCceEEEec-----cC--CCC---eEEEEEEEECCCCcEEEEEEEec
Confidence 0 001111 235677898875421 11 111 23445679999999999988887
Q ss_pred cccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHH
Q 009165 351 NFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLR 430 (541)
Q Consensus 351 nf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~ 430 (541)
++... .....+.+....++...+...|+.||+.+++.||+.+.... .|.+ .++.++|+++++||||++
T Consensus 335 ~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~ED~~i~e~~q~~~~~~~---------~~~~--~~l~~~D~~i~~~Rr~l~ 402 (446)
T 1z01_A 335 VCPTD-EDRKKFQYRYDHMYKPLCLHGFNDSDLYAREAMQNFYYDGT---------GWDD--EQLVATDISPITWRKLAS 402 (446)
T ss_dssp ECCSH-HHHHHHHHHHHTTHHHHTTTTHHHHHHHHHHHHHHHHHTSH---------HHHH--CCCCGGGHHHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHHhhhhccCCCCcchHHHHHHHHHHhcccc---------cccc--ccCchhhHHHHHHHHHHH
Confidence 76210 00000111112233333345688999999999999875421 2322 356779999999999999
Q ss_pred HhcCCCCCC
Q 009165 431 RHGNSQPEW 439 (541)
Q Consensus 431 ~~~~g~p~w 439 (541)
++..+...+
T Consensus 403 ~~~~~~~~~ 411 (446)
T 1z01_A 403 RWNRGIAKP 411 (446)
T ss_dssp HHCSCBCCC
T ss_pred HHHhhccCc
Confidence 998876443
No 4
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.7e-44 Score=379.90 Aligned_cols=313 Identities=19% Similarity=0.294 Sum_probs=215.5
Q ss_pred cccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEc
Q 009165 85 DSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFD 164 (541)
Q Consensus 85 e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd 164 (541)
....+|.+.||+||+++||++|+++.++++|++|||||+ .+|+++||+|+|||||++|+.|+++ ++.|+||||||+||
T Consensus 17 ~~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~-~~G~v~a~~n~CpHrga~L~~g~~~-~~~i~CpyHgw~f~ 94 (386)
T 2zyl_A 17 ALPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFAD-SHGDLKVLDGYCRHMGGDLSEGTVK-GDEVACPFHDWRWG 94 (386)
T ss_dssp CCCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBGGGSEEE-TTEEECTTTCCEEE
T ss_pred CCchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEEC-CCCCEEEEcCcCCCCCCCCCCCccc-CCEEEeCCCCCEEC
Confidence 345678889999999999999999999999999999999 7999999999999999999999986 67999999999999
Q ss_pred CCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCccee-eEEEEee
Q 009165 165 GCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSV-TIQRDLF 243 (541)
Q Consensus 165 ~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~-~~~~d~~ 243 (541)
.+|+|+.+|+.... ++..++++|||++++|+||||+++++.++..+..+|.++ .+++++|... ....+++
T Consensus 95 ~~G~~~~~P~~~~~--------~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~ 165 (386)
T 2zyl_A 95 GDGRCKLVPYARRT--------PRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIP-EAASDEWTDWRWNRILIE 165 (386)
T ss_dssp TTSBEEECTTCSSC--------CTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCG-GGGCTTBCCCEEEEEEEE
T ss_pred CCCCccccCccccc--------CcccCcceEeEEEECCEEEEEECCccCCCcccccCcccc-cccCCCceEEEEEEEEEc
Confidence 99999999975421 345789999999999999999986542222233455565 5566666543 3457888
Q ss_pred -cchhhHhhhcCCCCcccccccccccCcC--CCCCccEE-EEecCcccee--eccCCCC--ceeEEEecceeeeEEEEEc
Q 009165 244 -YGYDTLMENVSDPSHIDFAHHKVTGRRD--RAKPLPFK-LESSGHWGFA--GANDGNP--RISAKFVAPCYYMNKIEID 315 (541)
Q Consensus 244 -~~~~~~~EN~lD~~H~~~~H~~~~g~~~--~~~~~~~~-v~~~~~~gf~--~~~~~~~--~~~~~f~~P~~~~~~~~~~ 315 (541)
|||+.++||++|+||++|+|+++.+... .......+ +...+...+. +...+.. .....|..|+++++.+...
T Consensus 166 ~~nwk~~~EN~~D~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~P~~~~~~~~~~ 245 (386)
T 2zyl_A 166 GSNCRDIIDNVTDMAHFFYIHFGLPTYFKNVFEGHIASQYLHNVGRPDVDDLGTSYGEAHLDSEASYFGPSFMINWLHNR 245 (386)
T ss_dssp SSCGGGGGGGGGCSTHHHHTTCEEEEEEEEEEETTEEEEEEEEEECTTSSSCCSSSCCEEEEEEEEEESSSEEEEEEEEE
T ss_pred CcCHHhHhhhcccccchhhhCcCccccccccccCceeEEEecCCCCCchhhcccccCcceeeEEEEEECCeEEEEEeeec
Confidence 9999999999999999999998743210 00000001 1000000010 0011111 1235788999887654321
Q ss_pred ccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhh
Q 009165 316 TKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLS 395 (541)
Q Consensus 316 ~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~ 395 (541)
. .|. .....+++.++|+++++|++++.+++++.. ..++.. ...+.+.+. .....+++||..|++.|++..
T Consensus 246 ~----~g~-~~~~~~~~~~~Pv~~~~t~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~vf~ED~~I~e~q~~~~-- 315 (386)
T 2zyl_A 246 Y----GNY-KSESILINCHYPVTQNSFVLQWGVIVEKPK-GMSEEM-TDKLSRVFT-EGVSKGFLQDVEIWKHKTRID-- 315 (386)
T ss_dssp E----TTE-EEEEEEEEEEEEEETTEEEEEEEEEEBCCC-CCC--C-THHHHHHHH-HHHHHHHHHHHHHHTTCCCCS--
T ss_pred c----CCc-ceeEEEEEEEEEccCCEEEEEEEEEEecCC-CCChhh-HHHHHHHHH-HHHHHhhHHHHHHHHhccccc--
Confidence 1 121 112344556799999999999877655421 111100 011111111 134678999999999985321
Q ss_pred hcccCCccccccccccccccccccHHHHHHHHHHHHhcC
Q 009165 396 KLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGN 434 (541)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~ 434 (541)
.. ++.+.|+.++.||||++++..
T Consensus 316 -------------~p---~~~~~D~~~~~fRrw~~~~~~ 338 (386)
T 2zyl_A 316 -------------NP---LLVEEDGAVYQLRRWYEQFYV 338 (386)
T ss_dssp -------------SC---CCCGGGCSHHHHHHHHHGGGS
T ss_pred -------------CC---ccCcccHHHHHHHHHHHHhCC
Confidence 11 245689999999999999874
No 5
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=1.7e-41 Score=360.12 Aligned_cols=317 Identities=16% Similarity=0.182 Sum_probs=219.2
Q ss_pred CCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccc-cccCCCCeEE
Q 009165 78 EYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSE-GRIDENGHLQ 155 (541)
Q Consensus 78 ~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~-G~v~~~g~l~ 155 (541)
.++..+.|.+.+|++.|++||+++||+ +|+++.++++|++|||+|+ .+|+++||.|+|||||++|+. |++. ++.|+
T Consensus 26 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~C~Hrga~L~~~g~~~-~~~i~ 103 (409)
T 3n0q_A 26 DAEVFQTDLQEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRG-ADNVIRAFHNACRHRGSVICKAKKGN-NPKLV 103 (409)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCCSSEEE-CSSEE
T ss_pred CHHHHHHHHHHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEeecCcCCcCcCCccCcCccC-CCEEE
Confidence 346677899999999999999999998 6999999999999999999 799999999999999999996 7775 67999
Q ss_pred cccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCC---CCCCCCCCCCC
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKP---PMLPDAFDKPE 232 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~---p~~p~~~~~~~ 232 (541)
||||||+||.+|+|+.+|..... .++++.+|++|||++++|+|||++++++.+. ++... +.+. .++..+
T Consensus 104 CpyHgw~fd~dG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~l-~~~l~~~~~~l~-~~~~~~ 175 (409)
T 3n0q_A 104 CPYHQWTYELDGRLLWARDMGPD------FEPSRHGLKTVHCRELAGLIYICLADEAPDF-ERFAEVARPYLE-VHDLSN 175 (409)
T ss_dssp CTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCCC-HHHHHHHHHHHH-TTCGGG
T ss_pred ECCCCCEEeCCCCcccCCcCCcc------cCcccCCCceEEEEEECCEEEEEeCCCCCCh-HHhhhhhhhhhc-cccCCC
Confidence 99999999999999999975321 1245678999999999999999998764211 11100 0011 122223
Q ss_pred ccee-eEEEEeecchhhHhhhcCCCCcccccccccccCcCC--------------------------CCCc--------c
Q 009165 233 FSSV-TIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDR--------------------------AKPL--------P 277 (541)
Q Consensus 233 ~~~~-~~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~--------------------------~~~~--------~ 277 (541)
+... ...++++||||+++||++|+||++++|+++++.-.. +.+. .
T Consensus 176 ~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 255 (409)
T 3n0q_A 176 AKVAHESSIVERGNWKLVWENNRECYHCGGNHPALCRTFPDDPSVTGIEGGETPSNLQAHFDRCEQAGMPSGFHLSGDGQ 255 (409)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCTTGGGTSCCCHHHHSCCCSCCCHHHHHHHHHHHHTTCCCCCEECTTSS
T ss_pred eEEeeEEEEEEecchHhhhhhccccccccccCcchhhccccccccccccccccccchhhhhhhhhccCCcceeecccccc
Confidence 3322 345788999999999999999999999998653210 0011 1
Q ss_pred EEEEecCc-c---cee--ec----------cCCCCceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCe
Q 009165 278 FKLESSGH-W---GFA--GA----------NDGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGK 341 (541)
Q Consensus 278 ~~v~~~~~-~---gf~--~~----------~~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~ 341 (541)
+.+..... . .+. +. ..........++.||++++.. .+ .++++.++|++|++
T Consensus 256 ~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------pd----~~~~~~~~P~~p~~ 322 (409)
T 3n0q_A 256 FRVARMPLKEGAESYTMDGKTAVRRWLGRAAFADAGSLLKFHYPTTWNHFL---------SD----HSIVFRVTPISPTE 322 (409)
T ss_dssp EEEEEECCSTTCCSSSTTSSCSCSSCSSCCSSSCCCEEEEEETTTEEEEEC---------SS----CEEEEEEEEEETTE
T ss_pred eeeeeecccccccccccCCccccccccCCCcccCCceEEEEECCeEEEEEC---------CC----EEEEEEEEECCCCe
Confidence 11111000 0 010 00 000111235688899987631 22 23445679999999
Q ss_pred EEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHH
Q 009165 342 TRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRL 421 (541)
Q Consensus 342 ~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~ 421 (541)
|++.+.+++.--. +.+.... +..+. .....|.+||..+++..|+++.+. .|..+.|.| ..+.+
T Consensus 323 t~~~~~~~~~~~~--~~~~d~~--~~~~~--~~~~~~~~ED~~l~e~~Q~G~~s~----------~y~~G~~s~-~~E~~ 385 (409)
T 3n0q_A 323 TEVTTKWLVHKDA--VEGVDYD--LQRLT--EVWIATNDEDREVVEFNQMGINSP----------AYEPGPYSP-TQESG 385 (409)
T ss_dssp EEEEEEEEEETTC--CBTTTBC--HHHHH--HHHHHHHHHHHHHHHHHHHHHTST----------TCCCCBCCT-TTSHH
T ss_pred EEEEEEEEEcCcc--cccchhh--HHHHH--HHHHHHHHHHHHHHHHHhhhhcCC----------CCCCCCCCC-CccHh
Confidence 9998755543211 1111111 11111 124678899999999999999765 356777766 36999
Q ss_pred HHHHHHHHHHhcC
Q 009165 422 VLAFRNWLRRHGN 434 (541)
Q Consensus 422 VvafRrWl~~~~~ 434 (541)
+..|.+|+.+...
T Consensus 386 v~~F~~w~~~~l~ 398 (409)
T 3n0q_A 386 VLQFVEWYLSTLK 398 (409)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 6
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=9.3e-41 Score=348.89 Aligned_cols=317 Identities=19% Similarity=0.319 Sum_probs=228.0
Q ss_pred cCcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccC-CCCeEEcccCce
Q 009165 83 SSDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRID-ENGHLQCSYHGW 161 (541)
Q Consensus 83 ~~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~-~~g~l~CpyHGW 161 (541)
-.|.+++|++.||+||.++||++|+++.++++|++|||+|. +|+++||+|+|||||++|+.|.+. .++.|+||||||
T Consensus 24 yLE~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW 101 (394)
T 3gcf_A 24 YLEATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRA--KGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGW 101 (394)
T ss_dssp HHHCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCE
T ss_pred hhhhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCc
Confidence 35788999999999999999999999999999999999996 899999999999999999999742 367999999999
Q ss_pred EEcC-CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEEE
Q 009165 162 SFDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQR 240 (541)
Q Consensus 162 ~Fd~-~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 240 (541)
+||. +|+|+.+|+.+... .+.+.+|++|||++++|+|||+++++..+.. .+.+++.+.+.++.......
T Consensus 102 ~Fdl~dG~cv~iP~~p~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL----~e~L~~~~~d~~~~~~~~~~ 171 (394)
T 3gcf_A 102 TYDLDDGRLVDVLTSPGSP------VIGKIGIKVYPVQVAQGVVFVFIGDEEPHAL----SEDLPPGFLDEDTHLLGIRR 171 (394)
T ss_dssp EEETTTCBEEEETTSTTCT------TTTSCBCCEECEEEETTEEEEEESSSCCCCG----GGGSCTTTTCTTEEEEEEEE
T ss_pred EEECCCCceeccCCCcccc------cccccCceEEEEEEECCcEEEecCCCCCCCc----hhhcchhhcCCceEEEeEEE
Confidence 9999 89999999765321 2346789999999999999999975421111 12233345556666555678
Q ss_pred EeecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEEecCccceeeccC---------------------------
Q 009165 241 DLFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLESSGHWGFAGAND--------------------------- 293 (541)
Q Consensus 241 d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~~~~~~gf~~~~~--------------------------- 293 (541)
+++|||+.++||++|+||+ |+|+++++.++...+.++.+...+..++.+...
T Consensus 172 ~i~~NWK~~~EN~lD~yH~-~vH~~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~pv~~~~~~~~~~ 250 (394)
T 3gcf_A 172 TVQSNWRLGVENGFDTTHI-FMHRNSPWVSGNRLAFPYGFVPADRDAMQVYDENWPKGVLDRLSENYMPVFEATLDGETV 250 (394)
T ss_dssp EESSCHHHHHHHHSCSSGG-GGGTTCHHHHHTTBCCCSEEEECSTTSEEEECSSSSCEEEECHHHHEEEECEEEETTEEE
T ss_pred EEecCchhhHhhccccchh-hCchhhhcccccccccCcceeEcCCceEEeccCCCCcchhhhhhcccccccccccccccc
Confidence 9999999999999999999 999999987666655555554433222222110
Q ss_pred ------CC---CceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchh-
Q 009165 294 ------GN---PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWW- 363 (541)
Q Consensus 294 ------~~---~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~- 363 (541)
+. ....+.+..|++.... .. +...+..+ . ..||+++.+++++....+.+-... ...+|.
T Consensus 251 ~~~~~~~~~~~~~~~~s~~lP~v~~v~-----~~---p~~~~~~~-~-~~vPid~~~~~~~~~~~~~~~~~~-~~~~~~~ 319 (394)
T 3gcf_A 251 LSAELTGEEKKVAAQVSVWLPGVLKVD-----PF---PDPTLIQY-E-FYVPISETQHEYFQVLQRKVEGPE-DVKTFEV 319 (394)
T ss_dssp EECCCCSSCBCCCSEEEEETTTEEEEE-----SC---SSTTCEEE-E-EEEESSSSCEEEEEEEEEECSSHH-HHHHHHH
T ss_pred ccccccCcccccceeEEEEecCeeEec-----cC---CCCCeEEE-E-EEeeccCCeEEEEEEEEEECCCHH-HHHHHHH
Confidence 11 0123556667665432 11 22222222 2 348999999999977766542100 001222
Q ss_pred ccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcCC
Q 009165 364 QVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNS 435 (541)
Q Consensus 364 ~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~g 435 (541)
+.-.+|..+ ..+.++++|+..-+.+|.-..+.. .|.+- .....|..++++||...++..|
T Consensus 320 ~~~~~~~~~-~~~~f~~~d~~ar~~~~~~y~~~~---------g~~~e--~l~~~d~~~~~~r~~~~~~~~~ 379 (394)
T 3gcf_A 320 EFEERWRDD-ALHGFNDDDVWAREAQQEFYGERD---------GWSKE--QLFPPDMCIVKWRTLASERGRG 379 (394)
T ss_dssp HHHHTHHHH-TTTTTTHHHHHHHHHHHHHHHHSC---------HHHHC--CCCGGGHHHHHHHHHHHHHCSE
T ss_pred HHHHHhHHH-hhcccchhhHHHHHHHHHhhcccC---------CCChh--hccCcchhHHHHHHHHHHhccc
Confidence 233456553 247889999999999998876531 35442 3456799999999999999876
No 7
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=3.7e-41 Score=357.81 Aligned_cols=317 Identities=15% Similarity=0.186 Sum_probs=218.7
Q ss_pred CCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcc-ccccCCCCeEE
Q 009165 78 EYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLS-EGRIDENGHLQ 155 (541)
Q Consensus 78 ~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls-~G~v~~~g~l~ 155 (541)
.++..+.|.+.+|++.|++||+++||+ +|+++.++++|++|||+|+ .+|+++||+|+|||||++|+ .|+++ ++.|+
T Consensus 28 d~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~-~dG~v~A~~n~CpHrga~L~~~g~~~-~~~i~ 105 (412)
T 3vca_A 28 SPEVYALDLQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRS-RDGEVRAFHNSCRHRGSLICKARQGQ-VAKLV 105 (412)
T ss_dssp CHHHHHHHHHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSCCSSEEE-CSSEE
T ss_pred CHHHHHHHHHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEc-CCCCEEEecccCCCCCCEeecccccC-CCEEE
Confidence 346667899999999999999999998 6999999999999999999 79999999999999999998 78876 67999
Q ss_pred cccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCC---CCCC
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAF---DKPE 232 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~---~~~~ 232 (541)
||||||+||.+|+|+.+|..... .++++.+|++|||++++|+|||++++++.+. ++...+ +.+.+ +..+
T Consensus 106 CPyHgw~fdldG~~~~~P~~~~~------~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~l-~~~l~~-~~~~l~~~~~~~ 177 (412)
T 3vca_A 106 CPYHQWTYELDGKLIWANDMGPD------FDASKYGLKPVNLRNLDGLIYICLSDTPPDF-QTFAQL-ARPYLEVHDLKD 177 (412)
T ss_dssp CTTTCCEECTTSCEEECTTCCTT------CCGGGCSCCEEEEEEETTEEEEECSSSCCCC-HHHHHH-HHHHHHTTCGGG
T ss_pred cCCCCCEEcCCCccccCCccccc------cCcccCCCcEEEEEEECCEEEEEecCCCCCH-HHHhhh-hHHhhccccCCC
Confidence 99999999999999999975321 1245678999999999999999998763211 111100 01111 2222
Q ss_pred cce-eeEEEEeecchhhHhhhcCCCCcccccccccccCcCC---------------------------CCCccE------
Q 009165 233 FSS-VTIQRDLFYGYDTLMENVSDPSHIDFAHHKVTGRRDR---------------------------AKPLPF------ 278 (541)
Q Consensus 233 ~~~-~~~~~d~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~---------------------------~~~~~~------ 278 (541)
+.. ....++++||||+++||++|+||++++|+++++.-.. +.+..+
T Consensus 178 ~~~~~~~~~~~~~NWK~~~EN~~D~yH~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g 257 (412)
T 3vca_A 178 AKVAFTSTIIEKGNWKLVWENNRECYHCSSNHPALCRSFPLDPEVAGVQADGGVSKKLQAHFDRCEAAGTPAQFVLAGDG 257 (412)
T ss_dssp EEEEEEEEEEESSCHHHHHHHHTCCTTHHHHCHHHHTTSCCCHHHHCC----CCCHHHHHHHHHHHHTTCCCSCEECTTS
T ss_pred eEEeEEEEEEEccCchhhHhhccccccCcccCcchhhcccccccccccccccccccchhhhhhhhhccCCcccccccccC
Confidence 332 2345788999999999999999999999998653210 001111
Q ss_pred --EEEecC--c--ccee--ec-----c-----CCCCceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCC
Q 009165 279 --KLESSG--H--WGFA--GA-----N-----DGNPRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPG 340 (541)
Q Consensus 279 --~v~~~~--~--~gf~--~~-----~-----~~~~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg 340 (541)
.+.... . ..|. +. . .........++.||++++.. .+ .++++.++|++|+
T Consensus 258 ~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~Pn~~~~~~---------pd----~~~~~~~~P~~~~ 324 (412)
T 3vca_A 258 QYRLARMPLQEKALSYTMDGKAAVSRHLGRVAPPDAGTLLMFHYPSTWNHFL---------PD----HSLTFRVMPISPT 324 (412)
T ss_dssp SEEEEEECCSTTCCSSSSSSSCSCSSCSSCCCSTTCCEEEEEETTTEEEEEC---------SS----CEEEEEEEEEETT
T ss_pred ceeeeeecccccccccccCccccccccccCCcccCCceEEEEECCeEEEEEC---------CC----EEEEEEEEECCCC
Confidence 111100 0 0010 00 0 00011235688999987631 22 2344567999999
Q ss_pred eEEEEEEeeccccccCCCCcchhccchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccH
Q 009165 341 KTRSIVCSARNFFQFTMPGPAWWQVVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADR 420 (541)
Q Consensus 341 ~~R~~~~~~Rnf~~~~~p~~~~~~l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~ 420 (541)
+|++.+.+.+.-.. +.+.... +..+.. ....|.+||..+++..|+++.+. .|..+.|.| ..+.
T Consensus 325 ~t~v~~~~~~~~d~--~~~~d~~--~~~~~~--~~~~~~~ED~~l~e~~Q~G~~S~----------~y~~G~~sp-~~E~ 387 (412)
T 3vca_A 325 ETEVTTTWLVHKDA--VEGVDYD--LKRLTE--VWIATNDEDREIVETNQQGILSP----------AYVPGPYSP-GQES 387 (412)
T ss_dssp EEEEEEEEEEETTC--CBTTTBC--HHHHHH--HHHHHHHHHHHHHHHHHHHHTST----------TCCCCBCCT-TTCH
T ss_pred eEEEEEEEEEcccc--ccCccHH--HHHHHH--HHHHHHHHHHHHHHHhhhhhcCC----------CCCCCCCCC-Ccch
Confidence 99998655443211 1111111 111111 24578899999999999999765 356777766 3599
Q ss_pred HHHHHHHHHHHhcC
Q 009165 421 LVLAFRNWLRRHGN 434 (541)
Q Consensus 421 ~VvafRrWl~~~~~ 434 (541)
++..|.+|+.+...
T Consensus 388 ~v~~F~~w~~~~l~ 401 (412)
T 3vca_A 388 GVMQFVDWYAASLE 401 (412)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999987653
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1.4e-39 Score=339.07 Aligned_cols=316 Identities=21% Similarity=0.332 Sum_probs=223.4
Q ss_pred CcccccccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcccccc-CCCCeEEcccCceE
Q 009165 84 SDSKFSWRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRI-DENGHLQCSYHGWS 162 (541)
Q Consensus 84 ~e~~~~~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v-~~~g~l~CpyHGW~ 162 (541)
.|.+++|++.||+||.++||++|+++.++++|++|||+|. +|+++||+|+|||||++|+.|.+ ..++.|+||||||+
T Consensus 22 lE~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~--dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~ 99 (389)
T 3gkq_A 22 IDAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNRV--DGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWT 99 (389)
T ss_dssp HHCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEE--TTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEE
T ss_pred hhhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEEe--CCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCE
Confidence 5888999999999999999999999999999999999996 89999999999999999999974 23679999999999
Q ss_pred EcC-CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCCCCCCcceeeEEEE
Q 009165 163 FDG-CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAFDKPEFSSVTIQRD 241 (541)
Q Consensus 163 Fd~-~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~d 241 (541)
||. +|+|+.+|..+... .+.+.+|++|||++++|+|||+++++..+.. .+.+++.+.+.++......++
T Consensus 100 Fdl~dG~cv~iP~~P~~~------~~~~~~L~~ypV~e~~G~VfV~lgd~~~ppL----~e~l~~~~~~~~~~~~~~~~~ 169 (389)
T 3gkq_A 100 YRWDNGKLVDILTNPTSV------QIGRHALKTYPVREEKGLVFLFVGDQEPHDL----AEDVPPGFLDADLAVHGQHRV 169 (389)
T ss_dssp EETTTCBEEEETTCTTCT------TTTSCBCCBCCEEEETTEEEEEESSSCCCCG----GGGSCTTTTCTTEEEEEEEEE
T ss_pred EECCCCCeecccCCcccc------cccccCCcEEEEEEECCeEEEecCCCCCCCc----hhhcchhccCCceEEEeEEEE
Confidence 998 89999999765321 2346789999999999999999975421111 122333455566665556679
Q ss_pred eecchhhHhhhcCCCCcccccccccccCcCCCCCccEEEE-------------ecCccceeec-c---------------
Q 009165 242 LFYGYDTLMENVSDPSHIDFAHHKVTGRRDRAKPLPFKLE-------------SSGHWGFAGA-N--------------- 292 (541)
Q Consensus 242 ~~~~~~~~~EN~lD~~H~~~~H~~~~g~~~~~~~~~~~v~-------------~~~~~gf~~~-~--------------- 292 (541)
++|||+.++||++|+||+ ++|+++++..+.....++.+. ...+-|.... .
T Consensus 170 i~~NWK~~~EN~lD~yH~-~vH~~si~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~kg~~~~~~~~~~~~~~~~~~~~~ 248 (389)
T 3gkq_A 170 VDANWRMGVENGFDAGHV-FIHKSSILLDGNDIALPLGFAPGDPEQLTRSVTGEGAPKGVFDLLGEHSVPIFEATIEGQP 248 (389)
T ss_dssp ESSCHHHHHHHHTCSGGG-GGGTTCHHHHHTTBCBCSEEEECCGGGSEEEECCTTSCCEEEECSGGGEEEESEEEETTEE
T ss_pred EecCchhhHHhcchhchh-hCccccccccccccccccccccCCCcceEEEEcCCCCCccHHhhhhccccccccccccCcc
Confidence 999999999999999999 999999876543332222221 1112231110 0
Q ss_pred --C---CC--CceeEEEecceeeeEEEEEcccCcccCCCcEEEEEEEEEEecCCCeEEEEEEeeccccccCCCCcchh-c
Q 009165 293 --D---GN--PRISAKFVAPCYYMNKIEIDTKLPVVGDQKWIIWICSFNVPMAPGKTRSIVCSARNFFQFTMPGPAWW-Q 364 (541)
Q Consensus 293 --~---~~--~~~~~~f~~P~~~~~~~~~~~~~p~~g~~~~~~~i~~~~tPv~pg~~R~~~~~~Rnf~~~~~p~~~~~-~ 364 (541)
. +. ....+.+..|++.... .. +...+..+ - ..+|+++.+++++....+.+-... ...++. +
T Consensus 249 ~~~~~~~~~~~~~~~s~~lP~v~~v~-----~~---~~~~~~~~-~-~~vpi~~~~~~y~~~~~~~~~~~~-~~~~~~~~ 317 (389)
T 3gkq_A 249 AIQGHMGSKMVAISISVWLPGVLKVD-----PF---PDPTLTQF-E-WYVPIDEGHHLYLQMLGRRVGSEE-EARSFEAE 317 (389)
T ss_dssp EEECBCCSBCCCCEEEEETTTEEEEE-----SC---SSTTCEEE-E-EEEEEETTEEEEEEEEEEECSSHH-HHHHHHHH
T ss_pred cccCCCCCcccceeEEEEecCeeEec-----cC---CCCCeEEE-E-EEeeccCCeEEEEEEEEEEcCCHH-HHHHHHHH
Confidence 0 11 1124677778876532 11 22222222 2 348999999999877765542100 001122 2
Q ss_pred cchhhhhccccccccchhHHHHHhhHHHHhhhcccCCccccccccccccccccccHHHHHHHHHHHHhcCC
Q 009165 365 VVPRWHEHWTSNKVYDGDMIVLQGQEKIFLSKLMEGSEDVNKEYTKITFTPTQADRLVLAFRNWLRRHGNS 435 (541)
Q Consensus 365 l~prw~~H~~~~~VldqD~~iL~~Qer~l~~~~~~~~~~~~~~~~~~~~lP~~aD~~VvafRrWl~~~~~g 435 (541)
.-.+|..+. .+.++++|+..-+.+|.-..+.. .|.+- .....|..++++||...++..|
T Consensus 318 ~~~~~~~~~-~~~f~~~d~~ar~~~~~~y~~~~---------g~~~e--~l~~~d~~~~~wr~~~~~~~~~ 376 (389)
T 3gkq_A 318 FREKWVELA-LNGFNDDDILARRSMEPFYADDR---------GWREE--VLFESDRAIIEWRRLASQYNRG 376 (389)
T ss_dssp HHHTHHHHT-TTTTTHHHHHHHHHHHHHHHTSH---------HHHHC--CCCGGGHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHh-hccccchhHHHHHHHHHhhccCC---------CCChh--hccCcchhHHHHHHHHHHhccc
Confidence 334555532 46888999999999998876531 35443 3456799999999999999876
No 9
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=2e-34 Score=310.71 Aligned_cols=187 Identities=14% Similarity=0.238 Sum_probs=145.7
Q ss_pred CCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEE
Q 009165 77 DEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQ 155 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~ 155 (541)
..++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|||||+ .+|+++||+|+|||||++|+.|.+..++.|+
T Consensus 21 ~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~ 99 (454)
T 2gbw_A 21 WDEDVYALEIERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQ-SDGTFRAFINSCSHRGNQICHADSGNAKAFV 99 (454)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSCCCSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeccCCCCCCCCcccccCCcCEEE
Confidence 4456677899999999999999999998 6999999999999999999 7999999999999999999998874457999
Q ss_pred cccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCC----CCC-
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDA----FDK- 230 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~----~~~- 230 (541)
||||||+||.+|+|+.+|......+. ..++.+.+|++|+|++++|+|||+++++..+ .++...+ +... ++.
T Consensus 100 CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~-~~~~l~~-~~~~l~~~~~~~ 175 (454)
T 2gbw_A 100 CNYHGWVFGQDGSLVDVPLESRCYHN--SLDKQKLAAKSVRVETYKGFIFGCHDPEAPS-LEDYLGE-FRYYLDTIWEGA 175 (454)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGCCCCEEEEEEETTEEEEECCTTCCC-HHHHHGG-GHHHHHHHHTTT
T ss_pred eCCCCCEecCCCCcccCCcccccccc--cCCHhhCCCeeEEEEEECCEEEEEeCCCCCC-HHHHhhh-hHHHHHHHHhcC
Confidence 99999999999999999976432110 1223456899999999999999999875321 1111110 1001 111
Q ss_pred -CCccee--eEEEEeecchhhHhhhc-CCCCccccccccccc
Q 009165 231 -PEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (541)
Q Consensus 231 -~~~~~~--~~~~d~~~~~~~~~EN~-lD~~H~~~~H~~~~g 268 (541)
.++... ...++++||||+++||+ +|+||++++|..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~ 217 (454)
T 2gbw_A 176 GGGMELLGPPMKSLLQCNWKVPAENFIGDGYHVGWTHAAALS 217 (454)
T ss_dssp TTCEEEEEEEEEEEESSCTHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred CCceEEEeeEEEEEeCCCccchhhhcCCccCCCCcCCHhHHh
Confidence 223332 34568999999999999 799999999976543
No 10
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=2.2e-33 Score=303.79 Aligned_cols=187 Identities=13% Similarity=0.222 Sum_probs=144.1
Q ss_pred CCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEE
Q 009165 77 DEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQ 155 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~ 155 (541)
..++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+ .+|+++||+|+|||||++|+.|.+++.+.|+
T Consensus 29 td~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~-~~G~v~a~~n~C~Hrga~L~~g~~~~~~~i~ 107 (470)
T 2b1x_A 29 NDPEVHDVERERIFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRD-EGGEIRGHLNACRHRGMQVCRAEMGNTSHFR 107 (470)
T ss_dssp SCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESSCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEecccCCCCCEeeccCcCCCCEEE
Confidence 3446667899999999999999999998 5889999999999999998 7999999999999999999999886447999
Q ss_pred cccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeE-EEEEEcCeEEEecCCCcccccccCCCCCCCCCC------
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRF-PTMVSQGLLFVWPDEYGQERANATKPPMLPDAF------ 228 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~-pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~------ 228 (541)
||||||+||.+|+|+.+|......+. ..++.+.++.++ .|++++|+|||+++++..+ .++...+ +...+
T Consensus 108 CpyHgw~f~~~G~~~~~P~~~~~~~~--~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~-~~~~l~~-~~~~~d~~~~~ 183 (470)
T 2b1x_A 108 CPYHGWTYSNTGSLVGVPAGKDAYGN--QLKKSDWNLRPMPNLASYKGLIFGSLDPHADS-LEDYLGD-LKFYLDIVLDR 183 (470)
T ss_dssp CTTTCCEEETTSCEEECTTTTTTTTT--CCCGGGGSCCBCSEEEEETTEEEEESCTTCCC-HHHHHGG-GHHHHHHHHCS
T ss_pred ECCCCCeecCCCceeecCcccccccc--cCCHhhCCCcccceEEEECCEEEEEeCCCCCC-HHHHhcc-hhHHHHHHhcc
Confidence 99999999999999999975431110 122345678888 5777899999999875321 1111110 00000
Q ss_pred CCCCccee--eEEEEeecchhhHhhhc-CCCCccccccccccc
Q 009165 229 DKPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (541)
Q Consensus 229 ~~~~~~~~--~~~~d~~~~~~~~~EN~-lD~~H~~~~H~~~~g 268 (541)
...++... ...++++||||+++||+ +|+||++++|+++++
T Consensus 184 ~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~ 226 (470)
T 2b1x_A 184 SDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVE 226 (470)
T ss_dssp SSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHH
T ss_pred CCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhh
Confidence 12234333 34578999999999999 999999999999753
No 11
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=2.2e-34 Score=309.06 Aligned_cols=189 Identities=13% Similarity=0.157 Sum_probs=147.3
Q ss_pred CCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEE
Q 009165 77 DEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQ 155 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~ 155 (541)
..++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|||+|+ .+|+++||.|+|||||++|+.|....++.|+
T Consensus 41 td~~~~~~E~~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~-~dG~v~A~~n~C~Hrga~L~~g~~g~~~~i~ 119 (457)
T 3gzx_A 41 ADQDLYQLELERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQ-KDQSIKVFLNQCRHRGMRIVRSDGGNAKAFT 119 (457)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCCSSEEECSEEE
T ss_pred CCHHHHHHHHHHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEEC-CCCeEEEEeCcCCCCCcCccCCCCCcCCEEE
Confidence 4457778899999999999999999997 6899999999999999999 7999999999999999999998753467999
Q ss_pred cccCceEEcCCCCccccCCCCCCCc---hhhc-cCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCCC---
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGP---EARA-IQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDAF--- 228 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~---~~~~-~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~~--- 228 (541)
||||||+||.+|+|+.+|......+ .... .++.+.+|++|||.+++|+||||+++++.+ .++...+ +...+
T Consensus 120 CpyHgw~fd~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~-l~e~lg~-~~~~ld~~ 197 (457)
T 3gzx_A 120 CTYHGWAYDIAGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPD-LKTYLSD-AMPYMDVM 197 (457)
T ss_dssp CTTTCCEEETTSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCC-HHHHTTT-CHHHHHHH
T ss_pred cCCCCCEecCCCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCC-hHHHHhh-hHHHHHHH
Confidence 9999999999999999997532100 0000 123467899999999999999999876422 2222221 11111
Q ss_pred -CC--CCccee--eEEEEeecchhhHhhhc-CCCCccc-cccccccc
Q 009165 229 -DK--PEFSSV--TIQRDLFYGYDTLMENV-SDPSHID-FAHHKVTG 268 (541)
Q Consensus 229 -~~--~~~~~~--~~~~d~~~~~~~~~EN~-lD~~H~~-~~H~~~~g 268 (541)
+. .++..+ ....+++||||+++||+ +|+||++ ++|..+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~ 244 (457)
T 3gzx_A 198 LDRTEAGTEAIGGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVL 244 (457)
T ss_dssp HSSSTTCEEECSCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHH
T ss_pred hccCCCceEEEcceEEEEEccccchhhhccccccCCcccceehhhhh
Confidence 21 123333 34578999999999999 8999999 99998653
No 12
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=2.4e-34 Score=309.46 Aligned_cols=189 Identities=15% Similarity=0.199 Sum_probs=146.9
Q ss_pred CCCCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCe
Q 009165 75 VDDEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGH 153 (541)
Q Consensus 75 ~~~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~ 153 (541)
+=..++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|||||+ .+|+++||.|+|||||++|+.|.+..++.
T Consensus 18 ~y~~~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~g~~g~~~~ 96 (447)
T 2bmo_A 18 IHGDKELFQHELKTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQ-NDGSVRAFLNVCRHRGKTLVHAEAGNAKG 96 (447)
T ss_dssp GGTCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESBCTTTCCBCCCSSEEECSE
T ss_pred eeCCHHHHHHHHHHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEEC-CCCCEEEEeccCcCCCCCccccccCCcCe
Confidence 334456677899999999999999999998 6999999999999999999 79999999999999999999998754579
Q ss_pred EEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEE-EEEEcCeEEEecCCCcccccccCCCCCCCCC----C
Q 009165 154 LQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFP-TMVSQGLLFVWPDEYGQERANATKPPMLPDA----F 228 (541)
Q Consensus 154 l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~p-v~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~----~ 228 (541)
|+||||||+||.+|+|+.+|......+ ...++.+.+|++|| |++++|+|||+++++..+ .++...+ +... +
T Consensus 97 l~CpyHgw~f~~~G~~~~~P~~~~~~~--~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~-l~~~l~~-~~~~~~~~~ 172 (447)
T 2bmo_A 97 FVCGYHGWGYGSNGELQSVPFEKELYG--DAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPP-LIDYLGD-AAWYLEPTF 172 (447)
T ss_dssp EECTTTCCEEETTSCEEECTTHHHHTG--GGCCGGGCCCCBCSEEEEETTEEEEESCTTCCC-HHHHHTT-HHHHHHHHH
T ss_pred EECCCCcchhcCCCcccccCccccccc--ccCCHhHCCCcccceEEEECCEEEEEcCCCCCC-HHHHhcc-HHHHHHHHh
Confidence 999999999999999999997532110 01234567899998 999999999999875321 1111111 1000 1
Q ss_pred C-CCCccee--eEEEEeecchhhHhhhc-CCCCccccccccccc
Q 009165 229 D-KPEFSSV--TIQRDLFYGYDTLMENV-SDPSHIDFAHHKVTG 268 (541)
Q Consensus 229 ~-~~~~~~~--~~~~d~~~~~~~~~EN~-lD~~H~~~~H~~~~g 268 (541)
+ ..++... ...++++||||+++||+ +|+||++++|..+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~nwk~~~EN~~~D~yH~~~~H~~~l~ 216 (447)
T 2bmo_A 173 KYSGGLELVGPPGKVVVKANWKSFAENFVGDGYHVGWTHAAALR 216 (447)
T ss_dssp TTTSCEEEEEEEEEEEESSCHHHHHHHHHHBCTTHHHHTHHHHH
T ss_pred ccCCCeEEeeeeEEEEECCCcchhhhcCCCCCCCCcccchhhhh
Confidence 1 2234433 33568999999999999 799999999977654
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.97 E-value=6.4e-32 Score=291.48 Aligned_cols=185 Identities=14% Similarity=0.173 Sum_probs=142.6
Q ss_pred CCCCcccCcccccccCCceEeeecCCCC-CCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEE
Q 009165 77 DEYGKESSDSKFSWRDHWYPVSLVEDLD-PNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQ 155 (541)
Q Consensus 77 ~~~~~~~~e~~~~~~~~W~pv~~~~dL~-~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~ 155 (541)
..++..+.|.+.+|.+.|++||+++||+ +|+++.++++|++|+|+|+ .+|+++||+|+|||||++|+.|.+..++.|+
T Consensus 39 ~d~~~~~~E~~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~-~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~ 117 (460)
T 1uli_A 39 TDEALYEQELERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQ-KNGEIRVFLNQCRHRGMRICRADGGNAKSFT 117 (460)
T ss_dssp TCHHHHHHHHHHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEEC-TTSCEEEEESCCTTTCCCSCCSSEEECSCEE
T ss_pred CCHHHHHHHHHHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEc-CCCCEEEEeeeCCCCCCCCccccCCCCCEEE
Confidence 3445667899999999999999999998 5888999999999999998 7999999999999999999998874457899
Q ss_pred cccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCcccccccCCCCCCCCC----CCC-
Q 009165 156 CSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYGQERANATKPPMLPDA----FDK- 230 (541)
Q Consensus 156 CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~~~~~~~~~~p~~p~~----~~~- 230 (541)
||||||+||.+|+|+.+|......+ ..++.+.+|++|+|++++|+|||+++++..+ .++...+ +... ++.
T Consensus 118 CpyHgw~fd~~G~~~~~P~~~~~~~---~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~-l~~~l~~-~~~~l~~~~~~~ 192 (460)
T 1uli_A 118 CSYHGWAYDTGGNLVSVPFEEQAFP---GLRKEDWGPLQARVETYKGLIFANWDADAPD-LDTYLGE-AKFYMDHMLDRT 192 (460)
T ss_dssp CTTTCCEECTTCCEEECTTHHHHCT---TCCGGGSSCCEEEEEEETTEEEEECCTTSCC-HHHHHTT-HHHHHHHHHCSS
T ss_pred cCCCCCEEeCCCCEeeCCccccccC---CCCHhHcCCceeeEEEECCEEEEEeCCCCCC-HHHHhcc-hHHHHHHHhhcC
Confidence 9999999999999999997532101 1223457899999999999999999875321 1111111 1101 111
Q ss_pred -CCcce--eeEEEEeecchhhHhhhc-CCCCcc-cccccccc
Q 009165 231 -PEFSS--VTIQRDLFYGYDTLMENV-SDPSHI-DFAHHKVT 267 (541)
Q Consensus 231 -~~~~~--~~~~~d~~~~~~~~~EN~-lD~~H~-~~~H~~~~ 267 (541)
.++.. ....++++||||+++||+ +|+||+ .++|...+
T Consensus 193 ~~~~~~~~~~~~~~~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 193 EAGTEAIPGIQKWVIPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp TTCEEECSCCEEEEECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred CCceEEEeeEEEEEeccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 12222 134568999999999999 799999 69998543
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=2.5e-26 Score=198.01 Aligned_cols=101 Identities=19% Similarity=0.337 Sum_probs=93.5
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~ 170 (541)
..|++|+.++||++|+++.+++.|++|+|+|. +|+++||+|+|||||++|++|.++ ++.|+||||||+||. +|+|+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~~G~~~ 78 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYEV--EGEIYATDNLCTHGSARMSDGYLE-GREIECPLHQGRFDVCTGKAL 78 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTTCEEETTTCCEE
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEEE--CCEEEEECCcCCCCCCCCCCCeEe-CCEEECCCCCCEEeCCCCCEe
Confidence 36999999999999999999999999999996 899999999999999999999986 689999999999998 99999
Q ss_pred ccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecC
Q 009165 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (541)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~ 209 (541)
..|.. .+|++|||++++|.|||+++
T Consensus 79 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 79 CAPVT--------------QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp ETTCC--------------SCCCEECEEEETTEEEEECC
T ss_pred CCCCC--------------CCCCEEeEEEECCEEEEEcC
Confidence 98742 35899999999999999874
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.93 E-value=2.3e-26 Score=199.97 Aligned_cols=102 Identities=21% Similarity=0.329 Sum_probs=93.6
Q ss_pred CceEeeecCCCCCCCcEEEEECCeE-EEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCcc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRD-LVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCT 170 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~-lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~ 170 (541)
.|++|+.++||++|+++.+++.|++ |+|+|+ +|+++||+|+|||||++|++|.++ ++.|+||||||+||. +|+|+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~tG~~~ 79 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV--DGEVFVTDNLCTHGNAMLTDGYQD-GTIIECPFHGGSFDIATGAAK 79 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECSSTTCEEETTTCCBC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE--CCEEEEEeCcCCCCCCCCCCCEEe-CCEEEcCCCCCEEeCCCcCEe
Confidence 5999999999999999999999999 999998 899999999999999999999986 689999999999997 99999
Q ss_pred ccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
.+|.. .+|++|+|++++|.|||+++++
T Consensus 80 ~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 80 AFPCQ--------------IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp STTCC--------------SCCCEECEEEETTEEEEECC--
T ss_pred CCCCC--------------CCccEEeEEEECCEEEEeCCCC
Confidence 88742 3589999999999999999764
No 16
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.93 E-value=2.2e-26 Score=199.43 Aligned_cols=102 Identities=22% Similarity=0.291 Sum_probs=94.4
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCccc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSCTR 171 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c~~ 171 (541)
+|++|+.++||++|+++.+++.|++|+|+|. +|+++||+|+|||+|++|++|.++ ++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fdl~~G~~~~ 77 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNV--DGEFFAVQDTCTHGDWALSDGYLD-GDIVECTLHFGKFCVRTGKVKA 77 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEE--TTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCcCcEEe-CCEEECCCCCCEEeCCCCCEeC
Confidence 5999999999999999999999999999997 899999999999999999999986 689999999999996 999999
Q ss_pred cCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 172 IPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 172 iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
.|.. .+|++|||++++|.|||++++.
T Consensus 78 ~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 103 (106)
T 3dqy_A 78 LPAC--------------KPIKVFPIKVEGDEVHVDLDNG 103 (106)
T ss_dssp TTCC--------------SCCCEECEEEETTEEEECGGGC
T ss_pred CCCC--------------CCccEEEEEEECCEEEEEcccc
Confidence 8752 3589999999999999999754
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.93 E-value=4.8e-26 Score=199.32 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=94.9
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcccc-ccCCCCeEEcccCceEEcC-CCCc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG-RIDENGHLQCSYHGWSFDG-CGSC 169 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G-~v~~~g~l~CpyHGW~Fd~-~G~c 169 (541)
..|++|+.++||++|+++.+++.|++|+|+|+ +|+++||+|+|||||++|++| .++ ++.|+||||||+||. +|+|
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~~-~~~i~CP~Hg~~Fd~~tG~~ 80 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNV--DGELFATQDRCTHGDWSLSDGGYLE-GDVVECSLHMGKFCVRTGKV 80 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEE--TTEEEEEESBCTTSSCBSSTTCCEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEECCCCCCCcCCCCCCEEc-CCEEECCCCCCEEeCCCCcE
Confidence 36999999999999999999999999999998 899999999999999999999 775 679999999999999 8999
Q ss_pred cccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+.+|.. .+|++|||++++|+|||+++++
T Consensus 81 ~~~P~~--------------~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 81 KSPPPC--------------EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp EESSCC--------------SCCCBCCEEEETTEEEECTTCC
T ss_pred eCCCCC--------------CCccEEEEEEECCEEEEEeccc
Confidence 998742 3589999999999999999765
No 18
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.93 E-value=3.4e-26 Score=201.35 Aligned_cols=103 Identities=25% Similarity=0.490 Sum_probs=95.0
Q ss_pred CCceEeeecCCCCCCCcEEEEECCe-EEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcC-CCCc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGR-DLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG-CGSC 169 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~-~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~-~G~c 169 (541)
+.|++|+.++||++|+++.+++.|+ +|+|||+ +|+++||+|+|||||++|++|.++ ++.|+||||||+||. +|+|
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~--~g~~~A~~n~CpH~g~~L~~g~~~-~~~i~CP~Hg~~Fdl~tG~~ 79 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV--GDQFYATEDTCTHGIASLSEGTLD-GDVIECPFHGGAFNVCTGMP 79 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE--TTEEEEEESBCTTSSCBGGGSEEE-TTEEECTTTCCEEETTTCCE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEEe-CCEEECCCCCCEEcCCCcCE
Confidence 5799999999999999999999999 9999998 899999999999999999999986 689999999999997 9999
Q ss_pred cccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+.+|.. .+|++|||++++|.|||++++.
T Consensus 80 ~~~P~~--------------~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 80 ASSPCT--------------VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp EETTCC--------------SCCCEEEEEESSSEEEEEEEEC
T ss_pred eCCCCc--------------CCCCEEEEEEECCEEEEecCCc
Confidence 998752 3589999999999999999764
No 19
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.93 E-value=6e-26 Score=198.34 Aligned_cols=102 Identities=22% Similarity=0.429 Sum_probs=93.7
Q ss_pred CceEeeecCCCCCCCcEEEEE-CCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCC-CCcc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQL-LGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GSCT 170 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l-~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~-G~c~ 170 (541)
.|++|+.++||++|+++.+++ .|++|+|+|+ .+|+++||+|+|||||++|+.|.++ ++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~-~~g~~~A~~~~CpH~g~~L~~g~~~-~~~i~Cp~Hg~~Fd~~tG~~~ 78 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNS-EEHGVKAYQAMCPHQEILLSEGSYE-GGVITCRAHLWTFNDGTGHGI 78 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEE-TTTEEEEEESBCSSSSCBGGGSEEE-TTEEECTTTCCEEETTTCBBS
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEe-CCCeEEEEeCcCCCCCcCCCCceEc-CCEEEcCCCCCEEeCCCccCC
Confidence 599999999999999999999 9999999998 7999999999999999999999986 6899999999999995 9999
Q ss_pred ccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 171 RIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 171 ~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
. |. ...|++|+|++++|+|||+++++
T Consensus 79 ~-p~--------------~~~L~~~~v~~~~g~v~v~~~~~ 104 (111)
T 1vm9_A 79 N-PD--------------DAALAEYPVEVKGDDIYVSTKGI 104 (111)
T ss_dssp S-SS--------------SCBCCEECEEEETTEEEECCTTC
T ss_pred C-CC--------------cCCcCEEEEEEECCEEEEeccCc
Confidence 7 52 23689999999999999999765
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=7.4e-26 Score=198.39 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=92.6
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCC-eEEEEccCCCCCCC-CccccccCC-CC--eEEcccCceEEcC-
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE-NG--HLQCSYHGWSFDG- 165 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g-~~~a~~d~CpHRga-~Ls~G~v~~-~g--~l~CpyHGW~Fd~- 165 (541)
..|++|+.++||++|+++.+++.|++|+|||+ .+| +++||+|+|||||+ +|++|.+++ +| .|+||||||+||.
T Consensus 5 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 5 SQWKDICKIDDILPETGVCALLGDEQVAIFRP-YHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCCEEEEETTTSCTTEEEEEEETTEEEEEEEC-SSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETT
T ss_pred chheEEeeHHHCCCCCeEEEEECCEEEEEEEE-CCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCC
Confidence 35999999999999999999999999999998 689 69999999999999 899999862 23 8999999999999
Q ss_pred CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecC
Q 009165 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (541)
Q Consensus 166 ~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~ 209 (541)
+|+|+.+|. .+|++|||++++|+|||+++
T Consensus 84 tG~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 84 DGLCMEDEQ---------------FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp TTEETTTTT---------------TCCCEEEEEEETTEEEEECC
T ss_pred CccCCCCCc---------------ccccEEeEEEECCEEEEEcC
Confidence 899998773 35899999999999999985
No 21
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=1.2e-25 Score=199.64 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=93.5
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCcccc--ccCCCCeEEcccCceEEcC-CCCc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEG--RIDENGHLQCSYHGWSFDG-CGSC 169 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G--~v~~~g~l~CpyHGW~Fd~-~G~c 169 (541)
.|++|+.++||++|+++.+++.|++|+|+|+ +|+++|++|+|||+|++|++| .++ ++.|+||||||+||. +|+|
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~--~g~~~A~~n~CpH~g~~L~~G~~~~~-~~~i~CP~Hg~~Fdl~tG~~ 86 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD--GDSVYAISNLCSHAEAYLDMGVFHAE-SLEIECPLHVGRFDVRTGAP 86 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE--TTEEEEEESBCSSSSCBGGGSEEETT-TTEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE--CCEEEEEeCcCCCCCCCCCCCceeec-CCEEEcCCCCCEEcCCCccE
Confidence 6999999999999999999999999999997 899999999999999999999 775 689999999999996 9999
Q ss_pred cccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 170 TRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 170 ~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+.+|.. .+|++|||++++|.|||+++.+
T Consensus 87 ~~~P~~--------------~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 87 TALPCV--------------LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp EETTCC--------------SCCCBCCEEEETTEEEECCC--
T ss_pred eCCCCc--------------CCcceEEEEEECCEEEEEECcc
Confidence 998753 3589999999999999999765
No 22
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=1.1e-25 Score=202.49 Aligned_cols=105 Identities=16% Similarity=0.220 Sum_probs=94.4
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCC-eEEEEccCCCCCCC-CccccccCC--C-CeEEcccCceEEcC-
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSN-KWVAFDDKCPHRLA-PLSEGRIDE--N-GHLQCSYHGWSFDG- 165 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g-~~~a~~d~CpHRga-~Ls~G~v~~--~-g~l~CpyHGW~Fd~- 165 (541)
..|++|+.++||++|+++.+++.|++|+|||+ .+| +++||+|+|||||+ +|++|.+++ + ..|+||||||+||.
T Consensus 2 ~~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~-~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~ 80 (130)
T 2jza_A 2 SQWTTVCKLDDILPGTGVCALVEQQQIAVFRP-RNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLY 80 (130)
T ss_dssp CSEEEEEETTTSCTTBCCEEEETTEEEEEEBC-SSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETT
T ss_pred CceEEEEEHHHCCCCCeEEEEECCcEEEEEEE-CCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCC
Confidence 36999999999999999999999999999998 577 99999999999999 599999852 2 28999999999999
Q ss_pred CCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCCc
Q 009165 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEYG 212 (541)
Q Consensus 166 ~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~~ 212 (541)
+|+|+.+|. .+|++|||++++|.|||+++++.
T Consensus 81 tG~~~~~P~---------------~~L~~~~v~v~~g~V~V~~~~~~ 112 (130)
T 2jza_A 81 DGFCLEDGA---------------YSVAAYDTQVTNGNVQISIADSD 112 (130)
T ss_dssp TCCBSSCCS---------------SCCBCCCEEESSSEEEEECCCCC
T ss_pred CcCCCCCCc---------------CcceEEEEEEECCEEEEEeCCCC
Confidence 999998874 35899999999999999998754
No 23
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=1.1e-25 Score=199.33 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCC-CccccccCCC---CeEEcccCceEEcC-C
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLA-PLSEGRIDEN---GHLQCSYHGWSFDG-C 166 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga-~Ls~G~v~~~---g~l~CpyHGW~Fd~-~ 166 (541)
..|++|+.++||++|+++.+++.|++|+|||+ .+|+++||+|+||||++ +|++|.++++ ..|+||||||+||. +
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~t 82 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYI-PDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 82 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEE-TTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEe-cCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCC
Confidence 47999999999999999999999999999998 79999999999999999 8999998632 28999999999999 8
Q ss_pred CCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
|+|+.+|. .+|++|||++++|.|||++++.
T Consensus 83 G~~~~~P~---------------~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 83 GQCLEDEA---------------HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp CBBSSCTT---------------CBCCEECEEESSSEEEEECCCC
T ss_pred CcCCCCCC---------------ceeeEEEEEEECCEEEEEeCCc
Confidence 99998774 2589999999999999999765
No 24
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=6.8e-26 Score=200.59 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=88.9
Q ss_pred CCceEeeecCCCCCCCcEEEEEC-CeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCC----CCeEEcccCceEEcC-
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLL-GRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE----NGHLQCSYHGWSFDG- 165 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~-g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~----~g~l~CpyHGW~Fd~- 165 (541)
++|++||.++||++|+...+.+. |++|+|||+ .+|+++|++|+|||++++|+.|.+.+ ++.|+||||||+||+
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~-~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~ 86 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRL-DDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALD 86 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEEC-TTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEc-CCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCC
Confidence 47999999999999999999885 799999998 78999999999999999998876542 236999999999997
Q ss_pred CCCccccCCCCCCCchhhccCCCCCCceeEEEEEE-cCeEEEecC
Q 009165 166 CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLFVWPD 209 (541)
Q Consensus 166 ~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~-~G~vwV~~~ 209 (541)
+|+|+..|. .++++|||+++ +|+|||.+.
T Consensus 87 tG~~~~~p~---------------~~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 87 DGSCLDDPR---------------VSVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp TCBBSSCTT---------------CBCCEECEEECTTSEEEEEEE
T ss_pred CCcCcCCCC---------------CccceEEEEEEeCCEEEEecC
Confidence 899998763 35899999965 799999875
No 25
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.92 E-value=1.4e-25 Score=208.15 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=96.2
Q ss_pred ccCCceEeeecCCCCCCCcEEEEECCeEEEEEEeCCCCeEEEEccCCCCCCCCccccccCC--C-CeEEcccCceEEcC-
Q 009165 90 WRDHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNNSNKWVAFDDKCPHRLAPLSEGRIDE--N-GHLQCSYHGWSFDG- 165 (541)
Q Consensus 90 ~~~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~~g~~~a~~d~CpHRga~Ls~G~v~~--~-g~l~CpyHGW~Fd~- 165 (541)
..+.|++|+.++||++|+++.++++|++|+|||. +|+++||+|+|||||++|+.|.+++ + +.|+||||||+||.
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~--~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~ 90 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFYH--KGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLA 90 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEE--TTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEE--CCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecC
Confidence 3578999999999988899999999999999996 8999999999999999999999862 2 58999999999999
Q ss_pred CCCccc--c-CCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecCCC
Q 009165 166 CGSCTR--I-PQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPDEY 211 (541)
Q Consensus 166 ~G~c~~--i-P~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~~~ 211 (541)
+|+|+. | |......+ ...+...+|++|||++++|+|||+++++
T Consensus 91 tG~~~~~~i~P~~~~~~~---~~~~~~~~L~~~~v~v~~G~V~V~~~~~ 136 (157)
T 3d89_A 91 TGEGLYQSINPKDPSAKP---KWCSKGVKQRIHTVKVDNGNIYVTLSKE 136 (157)
T ss_dssp TCEEEEEECCCC-----C---EEEEEEECSCEEEEEEETTEEEEECCCC
T ss_pred CcCEEEeccCCCcccccc---ccccccCcceEEEEEEECCEEEEEeCCC
Confidence 999986 3 64221100 0011235799999999999999999865
No 26
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.83 E-value=1.9e-20 Score=167.96 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=87.2
Q ss_pred CceEeeecCCCCCCCcEEEEECCeEEEEEEeCC--------------------------CCeEEEEccCCCCCCCCcccc
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLAPLSEG 146 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~--------------------------~g~~~a~~d~CpHRga~Ls~G 146 (541)
.|..| .++||++|+.+.+.+.|++++|+|. . +|+++||.|+|||+|++|+.|
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHR-TKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEEC-CHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEEC-CHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 57777 8999999999999999999999985 3 899999999999999999999
Q ss_pred ccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEE-EcCeEEE
Q 009165 147 RIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (541)
Q Consensus 147 ~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~-~~G~vwV 206 (541)
.++ ++.|+||||||+||.+|+|+..|.. ..|..||+++ .+|.|||
T Consensus 83 ~~~-~~~i~CP~Hg~~fd~~G~~~~~P~~--------------~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 83 AGD-FGGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp CTT-TEEEEETTTTEEEETTCCEEESSCC--------------SCCCCCCEEESSSSEEEE
T ss_pred cCC-CCEEEcCCCCCEEcCCCCEeeCCCC--------------CCCCceeEEEEeCCEEEE
Confidence 875 5799999999999999999987742 2589999999 8999987
No 27
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.82 E-value=1.4e-20 Score=170.78 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=88.2
Q ss_pred cCCceEeee-cCCCCCCCcEEEE-ECCeEEEEEEeCCCCeE--EEEccCCCCCCCCccccccCCCCeEEcccCceEEcCC
Q 009165 91 RDHWYPVSL-VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC 166 (541)
Q Consensus 91 ~~~W~pv~~-~~dL~~g~~~~~~-l~g~~lvl~r~~~~g~~--~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~ 166 (541)
...|+.++. ++||+++..+.+. +.|++++++|+ .+|++ +|++|+|||||++|+.|.. ++.|+||||||+||.+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~-~~G~i~~~A~~n~CpH~g~~L~~g~~--~~~i~CP~Hg~~Fd~t 95 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVE-SDKTLATFGINAVCTHLGCVVPFNAA--ENKFICPCHGSQYNNQ 95 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBC-TTSSBCSEEEECBCTTTCCBCCEETT--TTEEECTTTCCEEETT
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEe-CCCcEEEEEEeCcCCCCCCCCccCCC--CCEEEcCCCCCEECCC
Confidence 357888888 8999988777765 57888888887 79999 9999999999999999873 5799999999999999
Q ss_pred CCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEEecC
Q 009165 167 GSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFVWPD 209 (541)
Q Consensus 167 G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~~ 209 (541)
|+|+..|.. .+|++|||++++|.|||.+-
T Consensus 96 G~~~~~P~~--------------~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 96 GRVVRGPAP--------------LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp CCEEESSCC--------------SCCCEEEEEEETTEEEEEEC
T ss_pred CCCccCCCC--------------CCCCEEEEEEECCEEEEEeC
Confidence 999998742 35899999999999999874
No 28
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.80 E-value=1.1e-19 Score=163.67 Aligned_cols=98 Identities=21% Similarity=0.189 Sum_probs=86.5
Q ss_pred CceEeeecCCCCCCCcEEEEEC--CeEEEEEEeCC---------CCeEEEEccCCCCCCCCccccccCCCCeEEcccCce
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLL--GRDLVLWFDNN---------SNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGW 161 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~--g~~lvl~r~~~---------~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW 161 (541)
-|+.|+.++||++|+++.+++. |++++|+|. . +|+++||.|+|||+|++|+++ . +++.|+||||||
T Consensus 7 p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~-~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~-~~~~i~CP~Hg~ 83 (133)
T 1g8k_B 7 PATAVSVAKNLAANEPVSFTYPDTSSPCVAVKL-GAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-S-SSKTFSCPCHFT 83 (133)
T ss_dssp CCEEEEEGGGCCBTCCEEEECSSTTSEEEEEEC-SSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTCC
T ss_pred CceeEEEHHHCCCCCeEEEEecCCCceEEEEEc-cccccccccCCCEEEEEeCcCCCCCCCCCcc-c-CCCEEECCCCCC
Confidence 4899999999999999999986 899999997 4 899999999999999999984 3 367999999999
Q ss_pred EEcC--CCCccccCCCCCCCchhhccCCCCCCceeEEEEEE--cCeEEEe
Q 009165 162 SFDG--CGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVW 207 (541)
Q Consensus 162 ~Fd~--~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~--~G~vwV~ 207 (541)
+||. +|+|+..|.. ..|.+|++++. +|.|||-
T Consensus 84 ~Fd~~~~G~~~~gP~~--------------~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 84 EFDAEKAGQMICGEAT--------------ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp EEEGGGTTEEEESSCS--------------SCCCEEEEEEETTTTEEEEE
T ss_pred EECCCCCCCEEcCCCC--------------CCCCEEEEEEECCCCEEEEE
Confidence 9999 8999987742 25899999999 6789985
No 29
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.64 E-value=2e-20 Score=168.14 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=81.6
Q ss_pred CceEe-eecCCCCCCCcEEEE-ECCeEEEEEEeCCCCe--EEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCC
Q 009165 93 HWYPV-SLVEDLDPNLPTAFQ-LLGRDLVLWFDNNSNK--WVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGS 168 (541)
Q Consensus 93 ~W~pv-~~~~dL~~g~~~~~~-l~g~~lvl~r~~~~g~--~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~ 168 (541)
.++.+ ...+|+++|+...++ +.|.++|++|+ .+|+ ++||+|+||||+++|+.|. + ++.|+||||||+||.+|+
T Consensus 15 ~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~-~~G~~~v~A~~n~CpH~g~~L~~g~-~-~~~i~CP~Hg~~Fd~tG~ 91 (133)
T 3azc_A 15 NDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVT-EDHQIANYGLNAVCTHLGCVVPWNV-S-ENKFICPCHGSQYDSTGK 91 (133)
Confidence 44443 445678877776665 45566666666 5888 9999999999999999997 3 579999999999999999
Q ss_pred ccccCCCCCCCchhhccCCCCCCceeEEEEE-EcCeEEEecCC
Q 009165 169 CTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVWPDE 210 (541)
Q Consensus 169 c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~-~~G~vwV~~~~ 210 (541)
|+.+|.. .+|++|||++ ++|.|||.++.
T Consensus 92 ~~~~P~~--------------~~L~~ypv~v~~~g~V~V~~~~ 120 (133)
T 3azc_A 92 VVRGPAP--------------LSLALVKATVTEDDKLVFTPWT 120 (133)
Confidence 9988742 2589999999 99999999864
No 30
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.76 E-value=8e-19 Score=164.97 Aligned_cols=100 Identities=22% Similarity=0.226 Sum_probs=85.8
Q ss_pred CceEeeecCCCCCCCcEEEEECC--eEEEEEEeC--------CCCeEEEEccCCCCCCCCccccccCCCCeEEcccCceE
Q 009165 93 HWYPVSLVEDLDPNLPTAFQLLG--RDLVLWFDN--------NSNKWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWS 162 (541)
Q Consensus 93 ~W~pv~~~~dL~~g~~~~~~l~g--~~lvl~r~~--------~~g~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~ 162 (541)
-+..|+.++||++|+++.+++.| ++++|+|.. .+|+++||+|+|||+|++|++| + +++.|+||||||+
T Consensus 50 p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~-~~~~i~CP~Hg~~ 127 (175)
T 4aay_B 50 PANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-A-DNKTFNCPGHFSV 127 (175)
T ss_dssp CCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-TTTEEECTTTCCE
T ss_pred CcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-C-CCCEEEcCCCCCE
Confidence 35579999999999999999975 589999961 2799999999999999999999 4 3689999999999
Q ss_pred EcCC--CCccccCCCCCCCchhhccCCCCCCceeEEEEE-EcCeEEEec
Q 009165 163 FDGC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFVWP 208 (541)
Q Consensus 163 Fd~~--G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~-~~G~vwV~~ 208 (541)
||.+ |+|+..|.. ..|.+|++++ .+|.||+--
T Consensus 128 Fd~~~tG~~~~gPa~--------------~~L~~y~v~vd~dG~V~avg 162 (175)
T 4aay_B 128 FDPEKGGQQVWGQAT--------------QNLPQYVLRVADNGDIFAEG 162 (175)
T ss_dssp EEGGGTTEEEECSCS--------------SCCCBEEEEECTTSEEEEEE
T ss_pred ECCCCCceEecCCCC--------------CCcCEEEEEEEcCCEEEEEE
Confidence 9996 999988752 3589999999 699988643
No 31
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.69 E-value=4.5e-17 Score=155.69 Aligned_cols=95 Identities=20% Similarity=0.288 Sum_probs=84.0
Q ss_pred eeecCCCCCCCcEEEEECCeEEEEEEeC-------------------------CCCeEEEEccCCCCCCCCccccccCCC
Q 009165 97 VSLVEDLDPNLPTAFQLLGRDLVLWFDN-------------------------NSNKWVAFDDKCPHRLAPLSEGRIDEN 151 (541)
Q Consensus 97 v~~~~dL~~g~~~~~~l~g~~lvl~r~~-------------------------~~g~~~a~~d~CpHRga~Ls~G~v~~~ 151 (541)
.+.+++|++|+...+++.|++++|+|.. .+|+|+|+.|+|||+|++|+.|..+ .
T Consensus 75 ~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~-~ 153 (196)
T 1pp9_E 75 EIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGD-F 153 (196)
T ss_dssp EEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCST-T
T ss_pred EEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCC-C
Confidence 4789999999999999999999999851 1799999999999999999999875 5
Q ss_pred CeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEE-EcCeEEE
Q 009165 152 GHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (541)
Q Consensus 152 g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~-~~G~vwV 206 (541)
+.+.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~--------------~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP--------------LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC--------------CCCcceeEEEEECCEEEE
Confidence 789999999999999999988742 2588999998 7898887
No 32
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.69 E-value=1e-16 Score=152.08 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=82.8
Q ss_pred CCceEeeecCCCCCCCcEEEEECCeEEEEEEeCC--------------------------CCeEEEEccCCCCCCC-Ccc
Q 009165 92 DHWYPVSLVEDLDPNLPTAFQLLGRDLVLWFDNN--------------------------SNKWVAFDDKCPHRLA-PLS 144 (541)
Q Consensus 92 ~~W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~~~--------------------------~g~~~a~~d~CpHRga-~Ls 144 (541)
..|..| .+++|++|+...+++.|++++|+|. . +|+|+|+.|+|||+|+ ++.
T Consensus 61 ~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~-~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 61 MAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHR-TPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCEEE-EGGGCCTTCEEEEEETTEEEEEEEC-CHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred cCcEEE-EHHHCCCCCeEEEEECCeEEEEEEC-CHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 469999 6999999999999999999999996 3 5899999999999999 466
Q ss_pred ccccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEEE
Q 009165 145 EGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLFV 206 (541)
Q Consensus 145 ~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV 206 (541)
.+. +.+.+.||||||+||.+|+|+..|.. ..|..+|+++.+|.|||
T Consensus 139 ~~~--~~~~~~CPcHGs~FD~~G~v~~gPa~--------------~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAG--DFGGWFCPCHGSHYDISGRIRKGPAP--------------LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EET--TTTEEEETTTTEEECTTCCEEESSCC--------------SCCCCCCEEEETTEEEE
T ss_pred CCC--CCCEEEcCCCCCEECCCCCEecCCCC--------------CCcceEEEEEECCEEEE
Confidence 542 35799999999999999999998742 24667777778999987
No 33
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.69 E-value=7.5e-17 Score=153.33 Aligned_cols=98 Identities=16% Similarity=0.280 Sum_probs=82.1
Q ss_pred ceEeeecCCCCCCCcEEEEECCeEEEEEEe------------------C---------------------CCCeEEEEcc
Q 009165 94 WYPVSLVEDLDPNLPTAFQLLGRDLVLWFD------------------N---------------------NSNKWVAFDD 134 (541)
Q Consensus 94 W~pv~~~~dL~~g~~~~~~l~g~~lvl~r~------------------~---------------------~~g~~~a~~d 134 (541)
|..| .+++|++|+.+.+++.|++|+|+|. + .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5554 7899999999999999999999992 0 2799999999
Q ss_pred CCCCCCCCccccccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEEE-cCeEEE
Q 009165 135 KCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMVS-QGLLFV 206 (541)
Q Consensus 135 ~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~-~G~vwV 206 (541)
+|||+|++|+.|.-.+.+.+.||||||+||.+|+|+..|.. ..|..||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~--------------~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC--------------CCCceEEEEEEeCCEEEE
Confidence 99999999998522223799999999999999999987742 25889999986 688887
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.69 E-value=6.7e-17 Score=146.79 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=81.1
Q ss_pred eecCCCCCCCcEEEEECCeEEEEEEe---------------------------------------CCCCeEEEEccCCCC
Q 009165 98 SLVEDLDPNLPTAFQLLGRDLVLWFD---------------------------------------NNSNKWVAFDDKCPH 138 (541)
Q Consensus 98 ~~~~dL~~g~~~~~~l~g~~lvl~r~---------------------------------------~~~g~~~a~~d~CpH 138 (541)
..+++|++|+.+.++..|+++.|.|. ..+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 35788999999999999999999884 127899999999999
Q ss_pred CCCCccc-cccCCCCeEEcccCceEEcCCCCccccCCCCCCCchhhccCCCCCCceeEEEEE-EcCeEEE
Q 009165 139 RLAPLSE-GRIDENGHLQCSYHGWSFDGCGSCTRIPQAASEGPEARAIQSPRACATRFPTMV-SQGLLFV 206 (541)
Q Consensus 139 Rga~Ls~-G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~-~~G~vwV 206 (541)
+|++|+. +..+ ++.|.||||||+||.+|+|+..|.. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~-~~~~~CP~Hgs~Fd~~G~~~~gPa~--------------~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGD-FGGWFCPCHGSHWDSAGRIRKGPAP--------------ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETT-TTEEEETTTTEEECTTSCEEESSCC--------------SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccC-CCEEEcCCCCCEECCCCCCccCCCC--------------CCCCceeEEEEECCEEEE
Confidence 9999998 6653 5799999999999999999988742 2588999999 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.66 E-value=1e-16 Score=149.39 Aligned_cols=69 Identities=23% Similarity=0.307 Sum_probs=60.9
Q ss_pred eEEEEccCCCCCCCCccccccCCCCeEEcccCceEEcCC-CC-ccccCCCCCCCchhhccCCCCCCceeEEEEEEcCeEE
Q 009165 128 KWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGC-GS-CTRIPQAASEGPEARAIQSPRACATRFPTMVSQGLLF 205 (541)
Q Consensus 128 ~~~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~-G~-c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~~G~vw 205 (541)
.++||.|+|||+|++|+.|.++ ++.|.||||||+||.+ |. |+..|.. .+|..||+++++|.||
T Consensus 79 gv~A~~~~CpH~G~~L~~g~~~-~~~i~CP~Hgs~Fd~~tG~~~~~gPa~--------------~~L~~~~v~v~~g~V~ 143 (165)
T 1nyk_A 79 GVVAYSAVCTHLGCIVSQWVAD-EEAALCPCHGGVYDLRHGAQVIAGPPP--------------RPVPQLPVRVEDGVLV 143 (165)
T ss_dssp TEEEEECBCTTTCCBCCEEEGG-GTEEECTTTCCEEEGGGTTEEEESSCS--------------SCCCEECEEEETTEEE
T ss_pred CEEEEEeecCCCCeEcccccCC-CCEEECCCCCCEEcCCCCCeeecCCCC--------------CCCcEEEEEEECCEEE
Confidence 3999999999999999999886 6799999999999995 86 9988742 3589999999999999
Q ss_pred EecCCC
Q 009165 206 VWPDEY 211 (541)
Q Consensus 206 V~~~~~ 211 (541)
|+++..
T Consensus 144 v~~~~~ 149 (165)
T 1nyk_A 144 AAGEFL 149 (165)
T ss_dssp ECSSCS
T ss_pred EEecCc
Confidence 999764
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.62 E-value=3.1e-17 Score=155.07 Aligned_cols=92 Identities=16% Similarity=0.261 Sum_probs=79.9
Q ss_pred cCCCCCCCcEEEE-ECCeEEEEEEeCCCCeE--EEEccCCCCCCCCccccccCCCCeEEcccCceEEcCCCCccccCCCC
Q 009165 100 VEDLDPNLPTAFQ-LLGRDLVLWFDNNSNKW--VAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDGCGSCTRIPQAA 176 (541)
Q Consensus 100 ~~dL~~g~~~~~~-l~g~~lvl~r~~~~g~~--~a~~d~CpHRga~Ls~G~v~~~g~l~CpyHGW~Fd~~G~c~~iP~~~ 176 (541)
.++|++|+...+. +.|++++++|+ .+|++ +|+.|+|||+|++|+.|.. ++.+.||||||+||.+|+|+..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~G~~l~~~~~--~~~~~CP~Hgs~Fd~~G~~~~gPa~- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVE-SKEAIRDYGINAVCTHLGCVVPWNAA--ENKFKCPCHGSQYDETGRVIRGPAP- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBC-TTCCBCSCCCBCBCTTTSCBCCBCSS--SSSEECTTTCCEECSSSCCCSSSCC-
T ss_pred ccccCCCceEEEeccCCCeEEEEEE-CCCcEEEEEEeCccCCCCCCCcccCC--CCEEECCCCCCEECCCCcEecCCCC-
Confidence 5778888887776 67899999998 78987 9999999999999999873 5789999999999999999988742
Q ss_pred CCCchhhccCCCCCCceeEEEEEEcCeEEEec
Q 009165 177 SEGPEARAIQSPRACATRFPTMVSQGLLFVWP 208 (541)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~pv~~~~G~vwV~~ 208 (541)
..|..||+++++|.|||.+
T Consensus 146 -------------~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -------------LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -------------SCCBCCCCCCSSSSCCCCC
T ss_pred -------------CCCCeEEEEEECCEEEEEe
Confidence 2589999999999999865
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.56 E-value=2.6e-16 Score=151.40 Aligned_cols=101 Identities=18% Similarity=0.192 Sum_probs=79.5
Q ss_pred CceEeeecC----CCCC-CCcEEEEECCeEEEEEEeCC------------CCeEEEEccCCCCCCCCcccccc-------
Q 009165 93 HWYPVSLVE----DLDP-NLPTAFQLLGRDLVLWFDNN------------SNKWVAFDDKCPHRLAPLSEGRI------- 148 (541)
Q Consensus 93 ~W~pv~~~~----dL~~-g~~~~~~l~g~~lvl~r~~~------------~g~~~a~~d~CpHRga~Ls~G~v------- 148 (541)
.|||+.... +|++ ...+.+++.+.+++++|+ . +|+++|+.|+|||+|++|+.|.+
T Consensus 35 f~yP~~~~p~~l~~l~~~~~~~~v~v~~~~i~v~r~-~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~ 113 (204)
T 1jm1_A 35 FAYPLTDEPCFLVDLQALTGQQITEIPNPYYGKYAG-PLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDP 113 (204)
T ss_dssp EECSSTTCEEEEEEHHHHHSSCCCEEECTTTTSSCT-TGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSS
T ss_pred eecCCCCCHHHHHhcccccccceEeeCCceEEEEec-CccccccccccccCCEEEEEeCcCCCCCcCccccccccccccc
Confidence 667754432 4432 224567888999999887 4 69999999999999999999864
Q ss_pred ---CCCCeEEcccCceEEcCC--CCccccCCCCCCCchhhccCCCCCCceeEEEEEE--cCeEEEec
Q 009165 149 ---DENGHLQCSYHGWSFDGC--GSCTRIPQAASEGPEARAIQSPRACATRFPTMVS--QGLLFVWP 208 (541)
Q Consensus 149 ---~~~g~l~CpyHGW~Fd~~--G~c~~iP~~~~~~~~~~~~~~~~~~l~~~pv~~~--~G~vwV~~ 208 (541)
.+++.|.||||||+||.+ |+|+..|.. ..|..|++.++ +|.|||..
T Consensus 114 ~~~~~~~~i~CP~Hgs~FDl~tGG~v~~gPa~--------------~~L~~~~v~v~~~~g~v~v~g 166 (204)
T 1jm1_A 114 GLYAKGADLHCPCHGSIYALKDGGVVVSGPAP--------------RPLPIVILDYDSSTGDIYAVG 166 (204)
T ss_dssp EEETTTTEEECTTTCCEEEGGGTSEEEESSCC--------------SCCCBEEEEECTTTCEEEEEE
T ss_pred cccCCCCEEECCCCCCEEeCCCCCeEecCCCC--------------CCCCeEeeEEEecCCEEEEEe
Confidence 235799999999999996 799987742 24788999887 89999876
No 38
>3hug_B Probable conserved membrane protein; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.57 E-value=5.8 Score=33.54 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=24.0
Q ss_pred hHHHHhhhcCChhhHHHHHHHHHHHHHHH
Q 009165 459 LDRFEQHTLKCSSCREAYSAFQTGQKFLI 487 (541)
Q Consensus 459 ldRy~~HT~~C~sC~~Al~~~~~~~~~~~ 487 (541)
-.++++|-..|+.|++.+..++.+..++.
T Consensus 44 ~~~vEaHLa~Cp~CR~ev~eL~~~~a~L~ 72 (108)
T 3hug_B 44 RREFEAHLAGCPECRGAVTELCGVPALLS 72 (108)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTHHHHHT
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999987765554
No 39
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=44.15 E-value=9.3 Score=32.58 Aligned_cols=18 Identities=33% Similarity=0.576 Sum_probs=15.9
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++.-
T Consensus 9 ~~~~C~~c~ka~~~L~~~ 26 (120)
T 3fz4_A 9 EYPKCSTCRRAKAELDDL 26 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 678999999999999864
No 40
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=42.09 E-value=11 Score=32.16 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.6
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++.-
T Consensus 10 ~~p~C~~c~ka~~~L~~~ 27 (119)
T 3f0i_A 10 HNPKCSKSRETLALLENQ 27 (119)
T ss_dssp CCTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 577999999999999763
No 41
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=40.24 E-value=11 Score=31.99 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.6
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++.-
T Consensus 10 ~~p~C~~c~ka~~~L~~~ 27 (120)
T 3gkx_A 10 QYPACSTCQKAKKWLIEN 27 (120)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 577999999999999763
No 42
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=37.53 E-value=13 Score=31.71 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.5
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++..
T Consensus 11 ~~p~C~~c~ka~~~L~~~ 28 (121)
T 3rdw_A 11 HNPRCSKSRETLALVEQQ 28 (121)
T ss_dssp CCTTCHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHHHc
Confidence 677999999999999753
No 43
>2q1z_B Anti-sigma factor CHRR, transcriptional activator; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_B
Probab=36.52 E-value=21 Score=33.04 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.4
Q ss_pred HHHHhhhcCChhhHHHHHHHHHHHHHH
Q 009165 460 DRFEQHTLKCSSCREAYSAFQTGQKFL 486 (541)
Q Consensus 460 dRy~~HT~~C~sC~~Al~~~~~~~~~~ 486 (541)
-..++|-..|+.|++.++.++.+...+
T Consensus 26 ~~ve~HL~~C~~Cr~~v~~l~~~~~~l 52 (195)
T 2q1z_B 26 LVVATHLSLCDECRARAGALDAVGGSL 52 (195)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999988765443
No 44
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=34.01 E-value=17 Score=30.84 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.4
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|...|+.|++|.+.++..
T Consensus 6 ~~~~C~~c~ka~~~L~~~ 23 (120)
T 3l78_A 6 LSPSCTSCRKARAWLNRH 23 (120)
T ss_dssp ECSSCHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 567899999999999764
No 45
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=33.79 E-value=17 Score=30.38 Aligned_cols=18 Identities=11% Similarity=0.222 Sum_probs=15.3
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+.+|+.|++|.+.++..
T Consensus 6 ~~~~C~~C~kak~~L~~~ 23 (114)
T 1rw1_A 6 GIKACDTMKKARTWLDEH 23 (114)
T ss_dssp ECSSCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHC
Confidence 567999999999999763
No 46
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=33.74 E-value=17 Score=31.90 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=15.5
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++..
T Consensus 8 ~~p~C~~crkak~~L~~~ 25 (141)
T 1s3c_A 8 HNPASGTSRNTLEMIRNS 25 (141)
T ss_dssp CCTTCHHHHHHHHHHHHT
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 568999999999999763
No 47
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=31.71 E-value=19 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=15.7
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|+..|+.|++|++.++..
T Consensus 11 ~~~~C~~C~ka~~~L~~~ 28 (120)
T 2kok_A 11 GIKNCDTMKKARIWLEDH 28 (120)
T ss_dssp ECSSCHHHHHHHHHHHHH
T ss_pred ECCCChHHHHHHHHHHHc
Confidence 567999999999999864
No 48
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=21.93 E-value=36 Score=29.09 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.4
Q ss_pred hhcCChhhHHHHHHHHHH
Q 009165 465 HTLKCSSCREAYSAFQTG 482 (541)
Q Consensus 465 HT~~C~sC~~Al~~~~~~ 482 (541)
|...|+.|++|.+.++..
T Consensus 7 ~~~~C~~C~ka~~~L~~~ 24 (132)
T 1z3e_A 7 TSPSCTSCRKARAWLEEH 24 (132)
T ss_dssp ECTTCHHHHHHHHHHHHT
T ss_pred eCCCChHHHHHHHHHHHc
Confidence 567999999999998764
Done!