BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009168
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/286 (27%), Positives = 126/286 (44%), Gaps = 40/286 (13%)
Query: 217 LRYLNLSHNALGEKGVRAFG-ALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKV 275
LR L+LS N LG+ G+R LL Q +LE+L L ++ + + + ++ +T LK
Sbjct: 111 LRELHLSDNPLGDAGLRLLCEGLLDPQCHLEKLQLEYCRLTAASCEPLASVLRATRALKE 170
Query: 276 LHFHNNMTGDEGAVAISEIVKHSPA-LEDFR---CSSTRIGAE--GGIALAKALGQCTHL 329
L NN G+ GA + + + S LE R C T + GI ++A L
Sbjct: 171 LTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCGIVASQA-----SL 225
Query: 330 KKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXCAPSLEVL 389
++LDL N G +AG+A E+ P LS A L+ L
Sbjct: 226 RELDLGSNGLG-DAGIA--ELCPGL-------LSP------------------ASRLKTL 257
Query: 390 DLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLS 449
L DIT + L +L+LA N+L DEGA L+ +SL + QL + +
Sbjct: 258 WLWECDITASGCRDLCRVLQAKETLKELSLAGNKLGDEGARLLCESLLQPGCQLESLWVK 317
Query: 450 TNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495
+ S+ A + ++ + L L ++ N + D GI E+ + L
Sbjct: 318 SCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQ 363
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 111/287 (38%), Gaps = 41/287 (14%)
Query: 208 FSSALEGSQ-LRYLNLSHNALGEKGVRAFG-ALLKSQNNLEELHLMNDGISEEAAQAILE 265
+S L ++ L+ L +S+N +GE G R G L S LE L L N G++ + +
Sbjct: 158 LASVLRATRALKELTVSNNDIGEAGARVLGQGLADSACQLETLRLENCGLTPANCKDLCG 217
Query: 266 LIPSTEKLKVLHFHNNMTGDEGAVAISEIVKH--SPA--LEDFRCSSTRIGAEGGIALAK 321
++ S L+ L +N GD G I+E+ SPA L+ I A G L +
Sbjct: 218 IVASQASLRELDLGSNGLGDAG---IAELCPGLLSPASRLKTLWLWECDITASGCRDLCR 274
Query: 322 ALGQCTHLKKLDLRDNMFGVEAGVALSEVL--PAFPDLTEVYLSYXXXXXXXXXXXXXXX 379
L LK+L L N G E L E L P
Sbjct: 275 VLQAKETLKELSLAGNKLGDEGARLLCESLLQPGC------------------------- 309
Query: 380 XXCAPSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEG 439
LE L + +T + L +L L+ N+L D G + ++L +
Sbjct: 310 -----QLESLWVKSCSLTAACCQHVSLMLTQNKHLLELQLSSNKLGDSGIQELCQALSQP 364
Query: 440 HGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGI 486
L + L + +G LA + + L+ L+++ N + D G+
Sbjct: 365 GTTLRVLCLGDCEVTNSGCSSLASLLLANRSLRELDLSNNCVGDPGV 411
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 414 LTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKM 473
LT+L L NEL D G L+ + L+ ++ ++ L S+ AG +L + P L+
Sbjct: 54 LTELCLRTNELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRE 113
Query: 474 LNINGNFIPDEGI 486
L+++ N + D G+
Sbjct: 114 LHLSDNPLGDAGL 126
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 115/290 (39%), Gaps = 34/290 (11%)
Query: 215 SQLRYLNLSHNALGEKGVRAFG-ALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKL 273
S LR L+L+ N +G+ G++ L Q LE+L L ++ + + + ++
Sbjct: 109 STLRELHLNDNPMGDAGLKLLCEGLQDPQCRLEKLQLEYCNLTATSCEPLASVLRVKADF 168
Query: 274 KVLHFHNNMTGDEGAVAISEIVKHSPA-LEDFRCSSTRIGAEGGIALAKALGQCTHLKKL 332
K L NN + G + + +K S LE + + I A L + L++L
Sbjct: 169 KELVLSNNDLHEPGVRILCQGLKDSACQLESLKLENCGITAANCKDLCDVVASKASLQEL 228
Query: 333 DLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXCAPS--LEVLD 390
DL N G AG+A P L PS L L
Sbjct: 229 DLSSNKLG-NAGIA-----ALCPGLL------------------------LPSCKLRTLW 258
Query: 391 LAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLST 450
L DIT Q L +L+LA NEL+DEGA L+ +SL E QL + + T
Sbjct: 259 LWECDITAEGCKDLCRVLRAKQSLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKT 318
Query: 451 NSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVL 500
S+ A V L L ++ N + DEG+ E+ + L VL
Sbjct: 319 CSLTAASCPYFCSVLTKSRSLLELQMSSNPLGDEGVQELCKALSQPDTVL 368
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 3/224 (1%)
Query: 265 ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEG-GIALAKAL 323
EL+P ++ +V+ + + IS V+ +PAL + + +G G G+ L
Sbjct: 18 ELLPLIQQYEVVRLDDCGLTEVRCKDISSAVQANPALTELSLRTNELGDGGVGLVLQGLQ 77
Query: 324 GQCTHLKKLDLRDNMFGVEAGVA-LSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXC 382
++KL L+ N EAG L +L + L E++L+
Sbjct: 78 NPTCKIQKLSLQ-NCGLTEAGCGILPGMLRSLSTLRELHLNDNPMGDAGLKLLCEGLQDP 136
Query: 383 APSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQ 442
LE L L ++T +L L+ N+L + G ++ + L++ Q
Sbjct: 137 QCRLEKLQLEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQ 196
Query: 443 LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGI 486
L + L + A + L V +K L+ L+++ N + + GI
Sbjct: 197 LESLKLENCGITAANCKDLCDVVASKASLQELDLSSNKLGNAGI 240
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 15/240 (6%)
Query: 136 IEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAG 195
I E+ K + L E +S I S + G A+R + + KD L + SD G
Sbjct: 15 ITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKD-LEIAEFSDIFTG 72
Query: 196 RPEEEALEVINMFSSAL-EGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDG 254
R ++E E + + AL + +L + LS NA G L LE L+L N+G
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132
Query: 255 ISEEA----AQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTR 310
+ +A A+A+ EL + + + + G + + + + + R T
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTV 191
Query: 311 IGAEGGIA-------LAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS 363
+ GI L + L C LK LDL+DN F AL+ L ++P+L E+ L+
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 194 AGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMND 253
AG AL+ + + A LR + N L ++ + +S L + ++ +
Sbjct: 137 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 196
Query: 254 GISEEAAQAIL-ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312
GI E + +L E + ++LKVL +N G+ A++ +K P L + + +
Sbjct: 197 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 256
Query: 313 AEGGIALAKALGQCTH--LKKLDLRDNMFGVEAGVALSEVLP-AFPDL 357
A G A+ A + + L+ L L+ N ++A L V+ PDL
Sbjct: 257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 304
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/284 (21%), Positives = 105/284 (36%), Gaps = 37/284 (13%)
Query: 211 ALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPST 270
++EG L+ +A+ + ++ A+L ++++E+ L + I EAA+ + E I S
Sbjct: 4 SIEGKSLKL-----DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 58
Query: 271 EKLKVLHFHNNMTGD------EGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALG 324
+ L++ F + TG E + + + P L R S G L L
Sbjct: 59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118
Query: 325 QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXCAP 384
+ T L+ L L +N G +AG ++ L AP
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQEL--------------------AVNKKAKNAP 158
Query: 385 SLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQLI 444
L + N + + L + + +N ++ EG I L EG
Sbjct: 159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQ 215
Query: 445 E---IDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485
E +DL N+ G+ LA + P L+ L +N + G
Sbjct: 216 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 15/240 (6%)
Query: 136 IEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAG 195
I E+ K + L E +S I S + G A+R + + KD L + SD G
Sbjct: 16 ITTEDEKSVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKD-LEIAEFSDIFTG 73
Query: 196 RPEEEALEVINMFSSAL-EGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDG 254
R ++E E + + AL + +L + LS NA G L LE L+L N+G
Sbjct: 74 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133
Query: 255 ISEEA----AQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTR 310
+ +A A+A+ EL + + + + G + + + + + R T
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTV 192
Query: 311 IGAEGGIA-------LAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS 363
+ GI L + L C LK LDL+DN F AL+ L ++P+L E+ L+
Sbjct: 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 194 AGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMND 253
AG AL+ + + A LR + N L ++ + +S L + ++ +
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197
Query: 254 GISEEAAQAIL-ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312
GI E + +L E + ++LKVL +N G+ A++ +K P L + + +
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
Query: 313 AEGGIALAKALGQCTH--LKKLDLRDNMFGVEAGVALSEVLP-AFPDL 357
A G A+ A + + L+ L L+ N ++A L V+ PDL
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL 305
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 106/288 (36%), Gaps = 37/288 (12%)
Query: 207 MFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILEL 266
M ++EG L+ +A+ + ++ A+L ++++E+ L + I EAA+ + E
Sbjct: 1 MARFSIEGKSLKL-----DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN 55
Query: 267 IPSTEKLKVLHFHNNMTGD------EGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALA 320
I S + L++ F + TG E + + + P L R S G L
Sbjct: 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLI 115
Query: 321 KALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXX 380
L + T L+ L L +N G +AG ++ L
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--------------------AVNKKA 155
Query: 381 XCAPSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGH 440
AP L + N + + L + + +N ++ EG I L EG
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGL 212
Query: 441 GQLIE---IDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485
E +DL N+ G+ LA + P L+ L +N + G
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 139/380 (36%), Gaps = 67/380 (17%)
Query: 148 LTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAG------------ 195
L P ++ N V + LR + L E+ LSD + G
Sbjct: 79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLL 137
Query: 196 ----RPEEEALEVINMFSSALE--GSQLRY------LNLSHNALGEKGVRAFGALLK-SQ 242
R E+ LE ++ +++ E S LR L +S+N + E GVR LK S
Sbjct: 138 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 197
Query: 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKH-SPAL 301
LE L L + G++ + + + ++ S L+ L +N GD G + + H S L
Sbjct: 198 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 257
Query: 302 EDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL--PAFPDLTE 359
I A+G L + L LK+L L N G E L E L P
Sbjct: 258 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC----- 312
Query: 360 VYLSYXXXXXXXXXXXXXXXXXCAPSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNL 419
LE L + T +FL +L +
Sbjct: 313 -------------------------QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 347
Query: 420 AENELQDEGAILIGKSLEEGHGQ----LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLN 475
+ N L+D G + L +G GQ L + L+ + + LA + L+ L+
Sbjct: 348 SNNRLEDAGV----RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 403
Query: 476 INGNFIPDEGIDEVKEILKH 495
++ N + D GI ++ E ++
Sbjct: 404 LSNNCLGDAGILQLVESVRQ 423
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 128/341 (37%), Gaps = 16/341 (4%)
Query: 176 ILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFS---------SALEGSQ-----LRYLN 221
++RL LTE D + AL +N+ S L+G Q ++ L+
Sbjct: 31 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 90
Query: 222 LSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILE-LIPSTEKLKVLHFHN 280
L + L G + L++ L+ELHL ++ + + Q + E L+ +L+ L
Sbjct: 91 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 150
Query: 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQC-THLKKLDLRDNMF 339
++ +++ P ++ S+ I G L + L L+ L L
Sbjct: 151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 210
Query: 340 GVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXCAPSLEVLDLAGNDITXX 399
+ L ++ + L E+ L + L L + IT
Sbjct: 211 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 270
Query: 400 XXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGAR 459
+ L +L+LA NEL DEGA L+ ++L E QL + + + S A
Sbjct: 271 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 330
Query: 460 LLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVL 500
+ V L L I+ N + D G+ E+ + L VL
Sbjct: 331 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 371
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 3/233 (1%)
Query: 265 ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALG 324
EL+P ++ +V+ + + IS ++ +PAL + S +G G + + L
Sbjct: 21 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80
Query: 325 Q-CTHLKKLDLRDNMF-GVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXC 382
++KL L++ G GV LS L P L E++LS
Sbjct: 81 TPSCKIQKLSLQNCCLTGAGCGV-LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 139
Query: 383 APSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQ 442
LE L L ++ +L ++ N++ + G ++ + L++ Q
Sbjct: 140 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 199
Query: 443 LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495
L + L + + R L + +K L+ L + N + D G+ E+ L H
Sbjct: 200 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 252
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/380 (22%), Positives = 139/380 (36%), Gaps = 67/380 (17%)
Query: 148 LTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAG------------ 195
L P ++ N V + LR + L E+ LSD + G
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLL 138
Query: 196 ----RPEEEALEVINMFSSALE--GSQLRY------LNLSHNALGEKGVRAFGALLK-SQ 242
R E+ LE ++ +++ E S LR L +S+N + E GVR LK S
Sbjct: 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSP 198
Query: 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKH-SPAL 301
LE L L + G++ + + + ++ S L+ L +N GD G + + H S L
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRL 258
Query: 302 EDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL--PAFPDLTE 359
I A+G L + L LK+L L N G E L E L P
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC----- 313
Query: 360 VYLSYXXXXXXXXXXXXXXXXXCAPSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNL 419
LE L + T +FL +L +
Sbjct: 314 -------------------------QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 420 AENELQDEGAILIGKSLEEGHGQ----LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLN 475
+ N L+D G + L +G GQ L + L+ + + LA + L+ L+
Sbjct: 349 SNNRLEDAGV----RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404
Query: 476 INGNFIPDEGIDEVKEILKH 495
++ N + D GI ++ E ++
Sbjct: 405 LSNNCLGDAGILQLVESVRQ 424
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 128/341 (37%), Gaps = 16/341 (4%)
Query: 176 ILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFS---------SALEGSQ-----LRYLN 221
++RL LTE D + AL +N+ S L+G Q ++ L+
Sbjct: 32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91
Query: 222 LSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILE-LIPSTEKLKVLHFHN 280
L + L G + L++ L+ELHL ++ + + Q + E L+ +L+ L
Sbjct: 92 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY 151
Query: 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQC-THLKKLDLRDNMF 339
++ +++ P ++ S+ I G L + L L+ L L
Sbjct: 152 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211
Query: 340 GVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXCAPSLEVLDLAGNDITXX 399
+ L ++ + L E+ L + L L + IT
Sbjct: 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK 271
Query: 400 XXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGAR 459
+ L +L+LA NEL DEGA L+ ++L E QL + + + S A
Sbjct: 272 GCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS 331
Query: 460 LLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVL 500
+ V L L I+ N + D G+ E+ + L VL
Sbjct: 332 HFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 3/233 (1%)
Query: 265 ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALG 324
EL+P ++ +V+ + + IS ++ +PAL + S +G G + + L
Sbjct: 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81
Query: 325 Q-CTHLKKLDLRDNMF-GVEAGVALSEVLPAFPDLTEVYLSYXXXXXXXXXXXXXXXXXC 382
++KL L++ G GV LS L P L E++LS
Sbjct: 82 TPSCKIQKLSLQNCCLTGAGCGV-LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDP 140
Query: 383 APSLEVLDLAGNDITXXXXXXXXXXXXXXQFLTKLNLAENELQDEGAILIGKSLEEGHGQ 442
LE L L ++ +L ++ N++ + G ++ + L++ Q
Sbjct: 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200
Query: 443 LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495
L + L + + R L + +K L+ L + N + D G+ E+ L H
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex
With Cellobionolactam
Length = 541
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 90 KESSKLMLEVIKRGPRTKEDGEEMIAEKATAASQTVFDISG 130
E+ K +L + + GP TK+ G +A AT++ T FDI G
Sbjct: 22 SEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 62
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 90 KESSKLMLEVIKRGPRTKEDGEEMIAEKATAASQTVFDISG 130
E+ K +L + + GP TK+ G +A AT++ T FDI G
Sbjct: 27 SEAGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPG 67
>pdb|3UN9|A Chain A, Crystal Structure Of An Immune Receptor
pdb|3UN9|B Chain B, Crystal Structure Of An Immune Receptor
pdb|3UN9|C Chain C, Crystal Structure Of An Immune Receptor
Length = 372
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 219 YLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278
+L+L H LG++G+ A L L+EL++ +G + AA A+ L++LH
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246
Query: 279 HNNMTGDEGAVAISEI 294
+ N EG + ++
Sbjct: 247 YFNELSSEGRQVLRDL 262
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%)
Query: 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLK 274
Q+ L LS+N L GV L ++ L L++ G+ +E + + + +L+
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ 214
Query: 275 VLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEG 315
L+ N GD A+A++ + P+LE + +EG
Sbjct: 215 ELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255
>pdb|2JXU|A Chain A, Nmr Solution Structure Of Kp-Terb, A Tellurite Resistance
Protein From Klebsiella Pneumoniae
Length = 153
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 248 LHLMNDGISEEAAQAILELIPSTEKLK------VLHFHNNMTGD---EGAVAISEIVKHS 298
+ + +DG+S E Q ++ + S+E+LK V+ F N + + + E +K+
Sbjct: 41 IAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVIEFFNKLVTSFDFDLEIGKGETMKYI 100
Query: 299 PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRD 336
AL+D + + ++ GIA+AK+ G +K +R+
Sbjct: 101 LALKD-QPEAAQLALRVGIAVAKSDGNFDDDEKSAVRE 137
>pdb|2RA8|A Chain A, Crystal Structure Of The Q64v53_bacfr Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr43
Length = 362
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 442 QLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDV 499
QL D+S + GARLL LK +N N++ DE E+++ L +DV
Sbjct: 280 QLETXDISAGVLTDEGARLLLDHVDKIKHLKFINXKYNYLSDEXKKELQKSLPXKIDV 337
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG-IDEVK 490
+EE +L+ ++LS N + R ++ + P LK+LN++GN + E +D++K
Sbjct: 159 IEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIK 212
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG-IDEVK 490
+EE +L+ ++LS N + R ++ + P LK+LN++GN + E +D++K
Sbjct: 165 IEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIK 218
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG-IDEVK 490
+EE +L+ ++LS N + R ++ + P LK+LN++GN + E +D++K
Sbjct: 165 IEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIK 218
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG-IDEVK 490
+EE +L+ ++LS N + R ++ + P LK+LN++GN + E +D++K
Sbjct: 159 IEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIK 212
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG-IDEVK 490
+EE +L+ ++LS N + R ++ + P LK+LN++GN + E +D++K
Sbjct: 165 IEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIK 218
>pdb|3GOZ|A Chain A, Crystal Structure Of The Leucine-Rich Repeat-Containing
Protein Legl7 From Legionella Pneumophila. Northeast
Structural Genomics Consortium Target Lgr148
Length = 362
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 414 LTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPG-LK 472
+T L+L+ N L + + ++ + ++LS NS+ + L Q+ P +
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 473 MLNINGNFIPDEGIDEVKEIL 493
LN++GNF+ + DE+ + L
Sbjct: 84 SLNLSGNFLSYKSSDELVKTL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,241,287
Number of Sequences: 62578
Number of extensions: 482744
Number of successful extensions: 1173
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 58
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)