Query 009168
Match_columns 541
No_of_seqs 494 out of 3438
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 21:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1909 Ran GTPase-activating 100.0 1.4E-39 3E-44 304.3 22.5 367 125-493 3-381 (382)
2 KOG1909 Ran GTPase-activating 100.0 2.1E-32 4.6E-37 256.2 17.0 283 215-498 30-329 (382)
3 cd00116 LRR_RI Leucine-rich re 100.0 7.3E-28 1.6E-32 240.9 33.9 287 216-504 24-313 (319)
4 PF13943 WPP: WPP domain 100.0 2.2E-30 4.7E-35 198.8 9.6 94 14-107 1-94 (99)
5 cd00116 LRR_RI Leucine-rich re 100.0 3.7E-27 8E-32 235.8 33.0 263 216-481 52-319 (319)
6 COG5238 RNA1 Ran GTPase-activa 99.9 2E-25 4.3E-30 202.1 16.3 323 124-495 2-331 (388)
7 KOG4194 Membrane glycoprotein 99.9 9.8E-27 2.1E-31 230.4 1.6 319 120-483 77-430 (873)
8 PLN00113 leucine-rich repeat r 99.9 1.2E-24 2.6E-29 249.2 10.2 182 119-340 116-297 (968)
9 PLN00113 leucine-rich repeat r 99.9 2.2E-24 4.8E-29 247.0 11.3 258 115-425 87-345 (968)
10 KOG4194 Membrane glycoprotein 99.9 5.7E-26 1.2E-30 225.1 -3.6 198 270-496 268-467 (873)
11 KOG0444 Cytoskeletal regulator 99.9 7.1E-24 1.5E-28 211.6 -6.4 157 293-479 216-372 (1255)
12 COG5238 RNA1 Ran GTPase-activa 99.8 2.3E-19 5E-24 163.0 17.8 189 293-483 86-286 (388)
13 KOG0444 Cytoskeletal regulator 99.8 1E-22 2.3E-27 203.3 -4.7 229 215-481 103-351 (1255)
14 KOG4308 LRR-containing protein 99.8 2.6E-19 5.7E-24 184.1 8.7 335 155-497 89-432 (478)
15 KOG4308 LRR-containing protein 99.8 7.1E-19 1.5E-23 180.9 9.3 368 123-500 89-463 (478)
16 PRK15387 E3 ubiquitin-protein 99.7 1E-17 2.2E-22 180.1 11.4 270 119-492 199-468 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 2.6E-17 5.6E-22 178.1 9.8 263 153-494 178-440 (754)
18 KOG0618 Serine/threonine phosp 99.7 1.9E-18 4.1E-23 180.7 -0.5 273 154-480 157-487 (1081)
19 KOG0472 Leucine-rich repeat pr 99.7 1.3E-18 2.9E-23 166.1 -2.4 90 383-483 434-542 (565)
20 KOG0618 Serine/threonine phosp 99.7 1.2E-17 2.6E-22 174.8 1.6 208 243-484 287-515 (1081)
21 KOG0472 Leucine-rich repeat pr 99.6 1E-18 2.2E-23 166.8 -8.7 278 154-495 46-330 (565)
22 PRK15387 E3 ubiquitin-protein 99.6 1.9E-15 4.1E-20 162.8 9.8 245 121-462 222-466 (788)
23 PRK15370 E3 ubiquitin-protein 99.6 2.7E-15 5.9E-20 162.5 10.1 260 119-461 176-435 (754)
24 KOG4237 Extracellular matrix p 99.6 4.3E-16 9.4E-21 148.9 1.8 298 153-497 67-375 (498)
25 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.4E-20 146.1 -0.9 273 175-492 60-345 (498)
26 KOG4341 F-box protein containi 99.5 6.3E-14 1.4E-18 135.3 8.3 310 150-496 135-454 (483)
27 PLN03210 Resistant to P. syrin 99.5 1.2E-13 2.5E-18 159.7 9.4 290 120-480 588-904 (1153)
28 PLN03210 Resistant to P. syrin 99.4 3.8E-13 8.2E-18 155.4 9.6 101 356-479 779-879 (1153)
29 KOG2120 SCF ubiquitin ligase, 99.4 4.4E-12 9.5E-17 117.5 12.6 200 272-495 186-388 (419)
30 KOG4341 F-box protein containi 99.4 1E-12 2.2E-17 127.0 6.7 302 151-485 108-417 (483)
31 KOG3207 Beta-tubulin folding c 99.3 2E-13 4.3E-18 132.6 -0.1 239 221-483 99-340 (505)
32 KOG2120 SCF ubiquitin ligase, 99.3 4E-12 8.7E-17 117.7 8.1 162 299-481 185-350 (419)
33 KOG3207 Beta-tubulin folding c 99.3 1.2E-12 2.5E-17 127.3 1.4 213 250-483 100-315 (505)
34 KOG0617 Ras suppressor protein 99.2 5.6E-14 1.2E-18 119.8 -8.1 154 243-425 33-186 (264)
35 KOG0617 Ras suppressor protein 99.2 1.6E-13 3.5E-18 117.0 -7.5 176 271-482 33-212 (264)
36 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.2E-16 114.1 0.8 132 325-483 282-413 (490)
37 PF14580 LRR_9: Leucine-rich r 99.0 7E-11 1.5E-15 105.2 1.9 36 439-475 111-146 (175)
38 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.3E-15 103.0 2.3 128 299-448 19-147 (175)
39 KOG1259 Nischarin, modulator o 98.9 4.6E-10 9.9E-15 104.3 1.5 127 244-397 285-412 (490)
40 COG4886 Leucine-rich repeat (L 98.7 5.8E-09 1.3E-13 107.5 3.7 194 219-455 97-291 (394)
41 KOG1859 Leucine-rich repeat pr 98.7 4.9E-09 1.1E-13 108.3 2.4 167 300-494 165-334 (1096)
42 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.4E-14 112.1 -1.6 61 296-368 115-175 (414)
43 KOG0531 Protein phosphatase 1, 98.7 4.9E-10 1.1E-14 115.9 -5.6 225 215-483 95-319 (414)
44 KOG0532 Leucine-rich repeat (L 98.7 4.2E-10 9.1E-15 113.1 -6.0 197 243-480 75-271 (722)
45 KOG2982 Uncharacterized conser 98.7 2.3E-08 5.1E-13 93.1 5.1 237 217-483 47-291 (418)
46 COG4886 Leucine-rich repeat (L 98.6 1.9E-08 4E-13 103.7 4.4 175 215-426 116-291 (394)
47 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.7E-14 112.5 -4.3 140 328-494 165-306 (1096)
48 KOG3665 ZYG-1-like serine/thre 98.6 3.2E-07 7E-12 99.3 12.7 212 154-390 61-281 (699)
49 KOG1947 Leucine rich repeat pr 98.6 3.4E-07 7.5E-12 96.9 12.5 136 215-362 188-328 (482)
50 KOG3665 ZYG-1-like serine/thre 98.5 2.7E-07 6E-12 99.8 9.9 16 183-198 61-76 (699)
51 KOG1947 Leucine rich repeat pr 98.5 8.5E-07 1.8E-11 93.9 11.9 230 243-492 161-425 (482)
52 KOG0532 Leucine-rich repeat (L 98.5 4.6E-09 1E-13 105.8 -5.3 196 216-452 76-271 (722)
53 KOG2982 Uncharacterized conser 98.4 2.5E-07 5.5E-12 86.4 5.0 216 183-426 46-263 (418)
54 PLN03150 hypothetical protein; 98.2 1.4E-06 3.1E-11 94.4 6.4 107 329-452 420-526 (623)
55 PLN03150 hypothetical protein; 98.2 1.7E-06 3.7E-11 93.8 6.6 107 301-423 420-526 (623)
56 PF13855 LRR_8: Leucine rich r 98.1 2.1E-07 4.5E-12 67.9 -1.7 60 412-481 1-61 (61)
57 KOG4658 Apoptotic ATPase [Sign 98.0 1.7E-06 3.6E-11 96.2 1.8 181 153-369 545-731 (889)
58 KOG4242 Predicted myosin-I-bin 98.0 2.7E-06 5.9E-11 84.3 2.7 270 215-496 214-495 (553)
59 KOG4242 Predicted myosin-I-bin 98.0 5E-06 1.1E-10 82.5 3.4 269 182-466 214-493 (553)
60 PF13855 LRR_8: Leucine rich r 97.9 2.6E-06 5.7E-11 62.1 0.8 40 323-366 21-60 (61)
61 PF12799 LRR_4: Leucine Rich r 97.8 2.5E-05 5.5E-10 52.4 3.3 37 442-483 2-38 (44)
62 KOG4579 Leucine-rich repeat (L 97.7 7.4E-06 1.6E-10 68.1 -0.1 60 385-455 78-137 (177)
63 KOG4579 Leucine-rich repeat (L 97.7 5.9E-06 1.3E-10 68.7 -0.9 60 271-340 77-136 (177)
64 KOG4658 Apoptotic ATPase [Sign 97.7 1.6E-05 3.4E-10 88.6 1.8 128 216-366 524-653 (889)
65 PF12799 LRR_4: Leucine Rich r 97.4 0.00016 3.5E-09 48.4 3.5 36 272-312 2-37 (44)
66 KOG2123 Uncharacterized conser 97.4 5.6E-05 1.2E-09 70.4 1.6 82 383-474 40-122 (388)
67 KOG1644 U2-associated snRNP A' 97.3 0.00013 2.9E-09 64.9 2.6 88 269-365 62-150 (233)
68 KOG1644 U2-associated snRNP A' 97.3 9E-05 2E-09 65.9 1.4 18 351-368 60-77 (233)
69 KOG2739 Leucine-rich acidic nu 97.3 0.0001 2.2E-09 68.3 1.8 40 440-482 90-129 (260)
70 KOG2123 Uncharacterized conser 97.2 0.00012 2.6E-09 68.2 1.0 105 298-418 18-123 (388)
71 PRK15386 type III secretion pr 97.1 0.00026 5.6E-09 71.2 2.2 137 238-423 47-188 (426)
72 smart00368 LRR_RI Leucine rich 97.0 0.0011 2.5E-08 39.4 3.5 26 412-437 2-27 (28)
73 KOG3735 Tropomodulin and leiom 97.0 0.0024 5.2E-08 61.3 7.3 121 355-477 198-321 (353)
74 smart00368 LRR_RI Leucine rich 96.9 0.0013 2.8E-08 39.2 3.3 26 469-494 2-27 (28)
75 KOG3864 Uncharacterized conser 96.9 0.00055 1.2E-08 61.1 2.2 101 384-496 101-206 (221)
76 KOG3735 Tropomodulin and leiom 96.7 0.0034 7.4E-08 60.3 6.2 116 243-358 198-316 (353)
77 PRK15386 type III secretion pr 96.6 0.0026 5.6E-08 64.1 5.2 78 293-397 46-125 (426)
78 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 61.4 1.6 42 351-397 61-104 (260)
79 PF13516 LRR_6: Leucine Rich r 96.2 0.0031 6.7E-08 36.0 1.6 22 469-490 2-23 (24)
80 KOG3864 Uncharacterized conser 96.1 0.0028 6.1E-08 56.7 1.9 83 356-451 102-186 (221)
81 PF13516 LRR_6: Leucine Rich r 96.0 0.0045 9.8E-08 35.3 1.8 21 412-432 2-22 (24)
82 smart00367 LRR_CC Leucine-rich 93.4 0.081 1.8E-06 30.7 2.5 22 469-490 2-24 (26)
83 smart00367 LRR_CC Leucine-rich 92.3 0.16 3.5E-06 29.4 2.6 21 441-461 2-23 (26)
84 PF13306 LRR_5: Leucine rich r 88.6 0.076 1.6E-06 44.8 -1.5 11 412-422 81-91 (129)
85 PF13504 LRR_7: Leucine rich r 85.6 0.63 1.4E-05 23.9 1.5 11 217-227 3-13 (17)
86 KOG3763 mRNA export factor TAP 84.4 1.2 2.7E-05 46.2 4.3 68 381-455 215-284 (585)
87 KOG3763 mRNA export factor TAP 84.2 2 4.2E-05 44.8 5.6 128 353-495 216-346 (585)
88 PF00560 LRR_1: Leucine Rich R 83.7 0.15 3.3E-06 28.2 -1.4 12 443-454 2-13 (22)
89 PF13306 LRR_5: Leucine rich r 76.1 0.88 1.9E-05 38.1 0.1 10 242-251 11-20 (129)
90 smart00369 LRR_TYP Leucine-ric 67.9 3.9 8.5E-05 23.4 1.6 12 414-425 4-15 (26)
91 smart00370 LRR Leucine-rich re 67.9 3.9 8.5E-05 23.4 1.6 12 414-425 4-15 (26)
92 smart00365 LRR_SD22 Leucine-ri 64.5 5.8 0.00012 23.0 1.8 15 441-455 2-16 (26)
93 KOG1832 HIV-1 Vpr-binding prot 59.3 4 8.6E-05 44.8 0.8 14 20-33 692-705 (1516)
94 PF11116 DUF2624: Protein of u 54.4 20 0.00043 27.6 3.6 44 25-69 5-51 (85)
95 PF10446 DUF2457: Protein of u 52.8 5.1 0.00011 40.5 0.3 19 474-492 26-44 (458)
96 PF02697 DUF217: Uncharacteriz 50.1 35 0.00075 25.4 4.3 48 17-64 16-63 (71)
97 KOG0473 Leucine-rich repeat pr 50.0 0.37 8E-06 44.4 -7.4 60 271-340 65-124 (326)
98 PF04931 DNA_pol_phi: DNA poly 49.8 14 0.00029 41.9 3.1 16 479-494 618-633 (784)
99 KOG0473 Leucine-rich repeat pr 48.5 0.5 1.1E-05 43.6 -6.8 87 353-456 40-126 (326)
100 smart00364 LRR_BAC Leucine-ric 45.2 14 0.00031 21.4 1.2 16 183-198 3-18 (26)
101 PRK12766 50S ribosomal protein 42.1 25 0.00055 32.6 3.1 14 481-494 44-57 (232)
102 PF05086 Dicty_REP: Dictyostel 30.2 23 0.0005 38.5 0.9 8 156-163 467-474 (911)
103 KOG1665 AFH1-interacting prote 24.7 42 0.00091 30.8 1.4 16 354-369 195-210 (302)
104 PF09860 DUF2087: Uncharacteri 22.1 1.9E+02 0.0042 21.4 4.3 40 15-61 3-42 (71)
105 PF07723 LRR_2: Leucine Rich R 21.7 64 0.0014 18.6 1.4 7 218-224 3-9 (26)
106 KOG3214 Uncharacterized Zn rib 21.3 71 0.0015 25.2 1.9 10 487-496 72-81 (109)
No 1
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-39 Score=304.30 Aligned_cols=367 Identities=43% Similarity=0.583 Sum_probs=332.7
Q ss_pred EEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHH
Q 009168 125 VFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEV 204 (541)
Q Consensus 125 ~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~ 204 (541)
.+++.|..+++-+.++...+...+... .++++|+||||.|+.++.++++..+...+ +|+..++|+.+.+++..+....
T Consensus 3 ~~s~~gk~lkl~t~ed~~~v~~~~~~~-~s~~~l~lsgnt~G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e~ 80 (382)
T KOG1909|consen 3 FFSIGGKSLKLETEEDEKDVEEELEPM-DSLTKLDLSGNTFGTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPEA 80 (382)
T ss_pred eeccCCeeeeeehHhhhhhHHHHhccc-CceEEEeccCCchhHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHHH
Confidence 466777777766666666655555444 89999999999999999999999999865 9999999999999999999999
Q ss_pred HHHHHhhhcCC-CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHH---------hcCCCCCcc
Q 009168 205 INMFSSALEGS-QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILE---------LIPSTEKLK 274 (541)
Q Consensus 205 l~~~~~~l~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------~l~~~~~L~ 274 (541)
|.+++.++.++ +|++||||+|.|+..+++.|..+|++|..|++|+|++|+++..+...+.. .+++.+.|+
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 99999999776 99999999999999999999999999999999999999999988877544 456678999
Q ss_pred EEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccC
Q 009168 275 VLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAF 354 (541)
Q Consensus 275 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 354 (541)
++..++|++.+.++..++..+...+.|+.+.+..|.|...|+..+..++..|++|+.|||.+|.|+..+...++..+..+
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCC--ChhHHHHH
Q 009168 355 PDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENEL--QDEGAILI 432 (541)
Q Consensus 355 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l--~~~g~~~l 432 (541)
++|++|++++|.+...|..++.+++....|+|++|.+.+|.|+..+...++.++...+.|.+|+|++|.+ .++++..+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei 320 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEI 320 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHH
Confidence 9999999999999999999999999998999999999999999999999999999999999999999999 88899988
Q ss_pred HHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHH
Q 009168 433 GKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEIL 493 (541)
Q Consensus 433 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l 493 (541)
...+......+...+.+.+.+.+.|.............-+.+++.++.+.+++++++.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~s~e~l~~eg~e~e~~~~~~~~t~~e~~ed~e~ie~e~~ee~~e~~ 381 (382)
T KOG1909|consen 321 ASKFDTAHVLLEDIDDSEEELEREGEEDEEEEVEKKETFKELNEDGEVIEEEGIEELKEIF 381 (382)
T ss_pred HHhcccccccchhhchhHHHHHhhhhhHHHHHHHhcCcchhhcccccccchhHHHHhhhhc
Confidence 8877434566777888888888888888888888888888888888888888888887654
No 2
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-32 Score=256.18 Aligned_cols=283 Identities=32% Similarity=0.455 Sum_probs=256.7
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCC---CCHH---HHHHHHHhcCCCCCccEEEcCCCCCChHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDG---ISEE---AAQAILELIPSTEKLKVLHFHNNMTGDEGA 288 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~---i~~~---~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 288 (541)
..++.|+||+|.|+....+.++..|.+.++|+..++++-- .... ....+...+..+++|++|+||+|.++..+.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 5899999999999999999999999999999999998752 2222 334556667788899999999999999999
Q ss_pred HHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHh---------hcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCE
Q 009168 289 VAISEIVKHSPALEDFRCSSTRIGAEGGIALAKAL---------GQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTE 359 (541)
Q Consensus 289 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l---------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 359 (541)
..+...++.+..|++|.|.+|.++..+...+..++ +.-+.|+.+...+|++.+.+...++..+..++.|+.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~lee 189 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEE 189 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccce
Confidence 99999999999999999999999999888766643 345789999999999999999999999999999999
Q ss_pred EEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhc
Q 009168 360 VYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEG 439 (541)
Q Consensus 360 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 439 (541)
+.+.+|.|...++..+..++.. |++|++|||.+|.++..+...++..++.+++|+.|++++|.+.+.|+..+.+++...
T Consensus 190 vr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 190 VRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred EEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 9999999999999888888887 599999999999999999999999999999999999999999999999999999977
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCC--ChhHHHHHHHHHhcCcc
Q 009168 440 HGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFI--PDEGIDEVKEILKHSLD 498 (541)
Q Consensus 440 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i--~~~g~~~l~~~l~~~~~ 498 (541)
.++|++|.+.+|.|+..+...++..+...|.|..|+|++|.+ .++++..+...+.....
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~~~~~~ 329 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKFDTAHV 329 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhcccccc
Confidence 999999999999999999999999999999999999999999 78899999988855433
No 3
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.97 E-value=7.3e-28 Score=240.88 Aligned_cols=287 Identities=32% Similarity=0.410 Sum_probs=206.0
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCC--HHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGIS--EEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE 293 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~--~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 293 (541)
.|+.|+++++.+++.+...++..+...++|++|+++++.+. ...+..+...+..+++|+.|++++|.+.......+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 47777777777777766677777776777777777777666 3445555555555677777777777776544444444
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHH
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQC-THLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGA 372 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 372 (541)
.... ++|++|++++|++++.+...+...+..+ ++|+.|++++|.++..+...+...+..+++|++|++++|.+++.+.
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 3333 5677777777777766666666666666 7788888888877766666666677777778888888888777666
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCC
Q 009168 373 EALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNS 452 (541)
Q Consensus 373 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 452 (541)
..++..+... ++|+.|++++|.+++.+...+...+..+++|++|++++|.+++.++..++..+...++.|++|++++|.
T Consensus 183 ~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 6666655543 678888888888877777777777777788888888888888777777776654235778888888888
Q ss_pred CChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcCccccccCC
Q 009168 453 MKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVLGPLD 504 (541)
Q Consensus 453 i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l~~l~ 504 (541)
|++.+...++..+..+++|+++++++|.++++|...+.+.++.....+..++
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 313 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW 313 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc
Confidence 8877777777777777888888888888888888888888776655555554
No 4
>PF13943 WPP: WPP domain
Probab=99.97 E-value=2.2e-30 Score=198.82 Aligned_cols=94 Identities=70% Similarity=1.057 Sum_probs=91.7
Q ss_pred eEEecCCChhhHHHHHHHHHhccCcchhhhhhccCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHH
Q 009168 14 SVKLWPPSQSTRLMLVQRMTKNLTTPSIFSRKYGLLSKEEAEEDAKQIEELAFAAANQHYEKEPDGDGSSSVQIYAKESS 93 (541)
Q Consensus 14 ~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ea~~~~~~i~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (541)
|||+|||+|+||++||+||++||++++|||+|||+|+.+||++++++||+.||+.|++|+..++++||.+++|+|+|+++
T Consensus 1 s~~lWPpsq~tR~~vv~Rm~~nLss~s~~s~ryg~l~~eeA~~~Ak~IEe~AF~~A~~~~~~~~d~dg~e~vq~YaKE~S 80 (99)
T PF13943_consen 1 SFKLWPPSQRTRDAVVERMTENLSSPSILSKRYGTLPKEEAEEAAKRIEEEAFAAANQHYETEPDGDGIEAVQLYAKEIS 80 (99)
T ss_pred CCCcCCCCchHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcc
Q 009168 94 KLMLEVIKRGPRTK 107 (541)
Q Consensus 94 ~~~l~~~~~~~~~~ 107 (541)
++|+|++|.++...
T Consensus 81 klmLE~vK~~~~~~ 94 (99)
T PF13943_consen 81 KLMLEVVKSGPKAA 94 (99)
T ss_pred HHHHHHHHhcCCcc
Confidence 99999999998765
No 5
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.96 E-value=3.7e-27 Score=235.79 Aligned_cols=263 Identities=33% Similarity=0.417 Sum_probs=156.8
Q ss_pred CeeEEEcCCCCCC--hhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH
Q 009168 216 QLRYLNLSHNALG--EKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE 293 (541)
Q Consensus 216 ~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 293 (541)
.|++|+++++.++ ..+...++..+..+++|+.|+|++|.+.......+..+... ++|++|++++|.+++.+...+..
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHH
Confidence 3555555555544 34444445555555566666666666554444444444333 45666666666666555555555
Q ss_pred HhhcC-CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHH
Q 009168 294 IVKHS-PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGA 372 (541)
Q Consensus 294 ~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 372 (541)
.+..+ ++|+.|++++|.++..+...+...+..+++|++|++++|.+++.+...++..+..+++|+.|++++|.+++.+.
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 55555 66666666666666555555555566666666666666666655555555555555666666666666665555
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhh-CCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCC
Q 009168 373 EALAGALKECAPSLEVLDLAGNDITAKAASSLAACIAL-KQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTN 451 (541)
Q Consensus 373 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n 451 (541)
..+...+.. +++|++|++++|.+++.+...++..+.. ++.|++|++++|.+++.|...++..+. .+++|++|++++|
T Consensus 211 ~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N 288 (319)
T cd00116 211 SALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGN 288 (319)
T ss_pred HHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCC
Confidence 555544433 3666666666666666555555443322 356777777777776666666666666 5667777777777
Q ss_pred CCChHHHHHHHHHHhcC-CCccEEEecCCCC
Q 009168 452 SMKRAGARLLAQVAVNK-PGLKMLNINGNFI 481 (541)
Q Consensus 452 ~i~~~~~~~l~~~l~~~-~~L~~L~L~~N~i 481 (541)
.+++.+...++..+... +.|+.|++.+|++
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 289 KFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 77777666666666655 5677777766653
No 6
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.93 E-value=2e-25 Score=202.12 Aligned_cols=323 Identities=24% Similarity=0.253 Sum_probs=238.4
Q ss_pred cEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHH
Q 009168 124 TVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALE 203 (541)
Q Consensus 124 ~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~ 203 (541)
..++++|..++.-+.+++...+..+... ..+++++||+|.|+.++.++++..+... .+|+..++|+-+.+....+...
T Consensus 2 ~~fSI~gk~lKl~T~eDvk~v~eel~~~-d~~~evdLSGNtigtEA~e~l~~~ia~~-~~L~vvnfsd~ftgr~kde~~~ 79 (388)
T COG5238 2 MKFSIGGKKLKLETKEDVKGVVEELEMM-DELVEVDLSGNTIGTEAMEELCNVIANV-RNLRVVNFSDAFTGRDKDELYS 79 (388)
T ss_pred ceeccCCceeeccccchhhHHHHHHHhh-cceeEEeccCCcccHHHHHHHHHHHhhh-cceeEeehhhhhhcccHHHHHH
Confidence 3578899998888899999888887775 8999999999999999999999998874 5999999999988888777777
Q ss_pred HHHHHHhhh-cCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCC
Q 009168 204 VINMFSSAL-EGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNM 282 (541)
Q Consensus 204 ~l~~~~~~l-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 282 (541)
.+.++..++ .+++|+..+||+|.|+...+..+..++++.+.|.+|.|++|+++..+...+...+.
T Consensus 80 ~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~-------------- 145 (388)
T COG5238 80 NLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALF-------------- 145 (388)
T ss_pred HHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHH--------------
Confidence 777766666 45788888888888888888888888887777888888888776654444443310
Q ss_pred CChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEc
Q 009168 283 TGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYL 362 (541)
Q Consensus 283 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 362 (541)
+++. -.-.+.-|.|+.+....|++.......+...+....+|+++.+
T Consensus 146 -------~la~--------------------------nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki 192 (388)
T COG5238 146 -------HLAY--------------------------NKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKI 192 (388)
T ss_pred -------HHHH--------------------------HhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEe
Confidence 0000 0112234455555555555555444555666666677888888
Q ss_pred ccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh-cCC
Q 009168 363 SYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE-GHG 441 (541)
Q Consensus 363 ~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~ 441 (541)
.+|.|...++..+.-.-...+.+|++|+|.+|.++..+...++.++..|+.|+.|.+..|-++..|+..+.+.+.. ..+
T Consensus 193 ~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p 272 (388)
T COG5238 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVP 272 (388)
T ss_pred eecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCC
Confidence 8888887776655433223358999999999999999999999999999999999999999999999888777642 378
Q ss_pred CccEEEccCCCCChHHHHH--HHHHH-hcCCCccEEEecCCCCChhH--HHHHHHHHhc
Q 009168 442 QLIEIDLSTNSMKRAGARL--LAQVA-VNKPGLKMLNINGNFIPDEG--IDEVKEILKH 495 (541)
Q Consensus 442 ~L~~L~Ls~n~i~~~~~~~--l~~~l-~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~ 495 (541)
+|..|...+|.+....+.. +.... .+.|-|..|.+.||+|.+.. ...+.+.+..
T Consensus 273 ~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d~~d~~~~if~~ 331 (388)
T COG5238 273 NLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELADFGDYYEDIFEV 331 (388)
T ss_pred CccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHHHHHHHHHHhhh
Confidence 9999999999765543322 22222 34577888999999998743 4555555543
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.8e-27 Score=230.42 Aligned_cols=319 Identities=20% Similarity=0.214 Sum_probs=187.0
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchH
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEE 199 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~ 199 (541)
.+..+.||||+|.+.-++.+.+.. + ++|+++++..|.++.. ..+ .....+|+.|+|.+|.|.....
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~n----l----~nLq~v~l~~N~Lt~I-----P~f-~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYN----L----PNLQEVNLNKNELTRI-----PRF-GHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred ccceeeeeccccccccCcHHHHhc----C----Ccceeeeeccchhhhc-----ccc-cccccceeEEeeeccccccccH
Confidence 345578999999877666644332 2 5666666666665421 011 0111456667776666666655
Q ss_pred HHHHH------HHHHHhhhc---------CCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHH
Q 009168 200 EALEV------INMFSSALE---------GSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAIL 264 (541)
Q Consensus 200 ~~l~~------l~~~~~~l~---------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 264 (541)
+.|.. +.+..|.++ +.++++|+|++|.|++.+...|..+ .+|..|.|+.|+|+......|.
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l----nsL~tlkLsrNrittLp~r~Fk 218 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL----NSLLTLKLSRNRITTLPQRSFK 218 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccccc----chheeeecccCcccccCHHHhh
Confidence 44332 233333322 2589999999999988777666555 7899999999998876666555
Q ss_pred HhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChh--HHH-----------------H-HHHHhh
Q 009168 265 ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAE--GGI-----------------A-LAKALG 324 (541)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~--~~~-----------------~-l~~~l~ 324 (541)
.+ ++|+.|+|..|+|...- .-.|..+++|+.|.|..|.|..- |+- . -...+-
T Consensus 219 ~L----~~L~~LdLnrN~irive----~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf 290 (873)
T KOG4194|consen 219 RL----PKLESLDLNRNRIRIVE----GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF 290 (873)
T ss_pred hc----chhhhhhccccceeeeh----hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc
Confidence 44 88888888888776420 11233444444444444444311 100 0 011233
Q ss_pred cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHH
Q 009168 325 QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSL 404 (541)
Q Consensus 325 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 404 (541)
++++|+.|+|++|.|.... ...+..+++|++|+|++|+|+......+.. +..|++|.|++|.|....-..|
T Consensus 291 gLt~L~~L~lS~NaI~rih----~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-----L~~Le~LnLs~Nsi~~l~e~af 361 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIH----IDSWSFTQKLKELDLSSNRITRLDEGSFRV-----LSQLEELNLSHNSIDHLAEGAF 361 (873)
T ss_pred ccchhhhhccchhhhheee----cchhhhcccceeEeccccccccCChhHHHH-----HHHhhhhcccccchHHHHhhHH
Confidence 4555555555555554432 344455666666666666666544444433 3566666666666665544444
Q ss_pred HHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 405 AACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 405 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
..+ ++|++|||+.|.|+..-- .-+.++. ++++|+.|++.+|+|... -..++...+.|++|||.+|.|..
T Consensus 362 ~~l----ssL~~LdLr~N~ls~~IE-Daa~~f~-gl~~LrkL~l~gNqlk~I----~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 362 VGL----SSLHKLDLRSNELSWCIE-DAAVAFN-GLPSLRKLRLTGNQLKSI----PKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred HHh----hhhhhhcCcCCeEEEEEe-cchhhhc-cchhhhheeecCceeeec----chhhhccCcccceecCCCCccee
Confidence 433 777777777777653100 0122333 677888888888877775 34556677888888888887644
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=1.2e-24 Score=249.17 Aligned_cols=182 Identities=17% Similarity=0.130 Sum_probs=86.3
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
....++.|+|++|.+.-... .. ..++|++|+|++|.+.......+..+ ++|++|+|++|.+....
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p---------~~-~l~~L~~L~Ls~n~~~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIP---------RG-SIPNLETLDLSNNMLSGEIPNDIGSF-----SSLKVLDLGGNVLVGKI 180 (968)
T ss_pred cCCCCCEEECcCCccccccC---------cc-ccCCCCEEECcCCcccccCChHHhcC-----CCCCEEECccCcccccC
Confidence 55678888888876421000 01 11577777777777653322222222 57777777777654433
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
+..+..+ ++|++|+|++|.++...+ ..+..+++|++|+|++|.+++..+..+. .+++|++|++
T Consensus 181 p~~~~~l---------~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~L 243 (968)
T PLN00113 181 PNSLTNL---------TSLEFLTLASNQLVGQIP----RELGQMKSLKWIYLGYNNLSGEIPYEIG----GLTSLNHLDL 243 (968)
T ss_pred ChhhhhC---------cCCCeeeccCCCCcCcCC----hHHcCcCCccEEECcCCccCCcCChhHh----cCCCCCEEEC
Confidence 3332222 255555555555543222 2233335555555555555443322222 2245555555
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 340 (541)
++|.+.. .++..+..+++|++|++++|.+... ++..+..+++|++|+|++|.+.
T Consensus 244 ~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 244 VYNNLTG----PIPSSLGNLKNLQYLFLYQNKLSGP----IPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred cCceecc----ccChhHhCCCCCCEEECcCCeeecc----CchhHhhccCcCEEECcCCeec
Confidence 5554432 1333444444444555444444321 2333334444444444444443
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.91 E-value=2.2e-24 Score=246.98 Aligned_cols=258 Identities=21% Similarity=0.208 Sum_probs=174.8
Q ss_pred HHhhhccCCcEEeccCCCcc-cccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCc
Q 009168 115 AEKATAASQTVFDISGGQRG-FIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFI 193 (541)
Q Consensus 115 ~~~~~~~~l~~ldls~~~~~-~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 193 (541)
+.....+.++.|+|++|.+. .+.. .++..+ .+|++|+|++|.+..... ....++|++|+|++|.
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~----~~~~~l----~~L~~L~Ls~n~l~~~~p-------~~~l~~L~~L~Ls~n~ 151 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPD----DIFTTS----SSLRYLNLSNNNFTGSIP-------RGSIPNLETLDLSNNM 151 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCCh----HHhccC----CCCCEEECcCCccccccC-------ccccCCCCEEECcCCc
Confidence 34556788999999998753 1211 122222 789999999998763211 1112689999999998
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCc
Q 009168 194 AGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKL 273 (541)
Q Consensus 194 ~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 273 (541)
+....+..+..+ ++|++|+|++|.+....+.. +..+++|++|+|++|.+.+..+..+ ..+++|
T Consensus 152 ~~~~~p~~~~~l---------~~L~~L~L~~n~l~~~~p~~----~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L 214 (968)
T PLN00113 152 LSGEIPNDIGSF---------SSLKVLDLGGNVLVGKIPNS----LTNLTSLEFLTLASNQLVGQIPREL----GQMKSL 214 (968)
T ss_pred ccccCChHHhcC---------CCCCEEECccCcccccCChh----hhhCcCCCeeeccCCCCcCcCChHH----cCcCCc
Confidence 765443333333 58999999999887644333 4556899999999998876544443 455899
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhccc
Q 009168 274 KVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPA 353 (541)
Q Consensus 274 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 353 (541)
++|+|++|.+.. .++..++.+++|++|++++|.+... ++..+..+++|+.|+|++|.+... ++..+..
T Consensus 215 ~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~ 282 (968)
T PLN00113 215 KWIYLGYNNLSG----EIPYEIGGLTSLNHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSGP----IPPSIFS 282 (968)
T ss_pred cEEECcCCccCC----cCChhHhcCCCCCEEECcCceeccc----cChhHhCCCCCCEEECcCCeeecc----CchhHhh
Confidence 999999998875 2566778889999999999988753 667788999999999999988653 3455566
Q ss_pred CCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCC
Q 009168 354 FPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQ 425 (541)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 425 (541)
+++|+.|++++|.+....+..+.. +++|+.|++++|.+++..+..+.. .++|+.|+|++|.++
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~l~~n~~~~~~~~~~~~----l~~L~~L~L~~n~l~ 345 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQ-----LQNLEILHLFSNNFTGKIPVALTS----LPRLQVLQLWSNKFS 345 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcC-----CCCCcEEECCCCccCCcCChhHhc----CCCCCEEECcCCCCc
Confidence 677777777777776554444432 456666666666555444333322 255555555555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=5.7e-26 Score=225.07 Aligned_cols=198 Identities=23% Similarity=0.225 Sum_probs=147.8
Q ss_pred CCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 009168 270 TEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALS 348 (541)
Q Consensus 270 ~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 348 (541)
+.++++|+|+.|++.. +. ..+-+++.|+.|+|++|.|... -...+..+++|+.|+|++|.|+... .
T Consensus 268 l~kme~l~L~~N~l~~-----vn~g~lfgLt~L~~L~lS~NaI~ri----h~d~WsftqkL~~LdLs~N~i~~l~----~ 334 (873)
T KOG4194|consen 268 LEKMEHLNLETNRLQA-----VNEGWLFGLTSLEQLDLSYNAIQRI----HIDSWSFTQKLKELDLSSNRITRLD----E 334 (873)
T ss_pred ecccceeecccchhhh-----hhcccccccchhhhhccchhhhhee----ecchhhhcccceeEeccccccccCC----h
Confidence 4678888888888765 32 3445678899999999988754 2456889999999999999988753 4
Q ss_pred HhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhH
Q 009168 349 EVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEG 428 (541)
Q Consensus 349 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g 428 (541)
..|..+..|++|+|++|.++...-..+ ..+.+|++|||++|.|....-. -+..+...+.|++|+|.+|+|..
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af-----~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~gNqlk~-- 406 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSIDHLAEGAF-----VGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLTGNQLKS-- 406 (873)
T ss_pred hHHHHHHHhhhhcccccchHHHHhhHH-----HHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeecCceeee--
Confidence 556677889999999999875322222 3368999999999988753322 23334456999999999999984
Q ss_pred HHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEec-CCCCChhHHHHHHHHHhcC
Q 009168 429 AILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNIN-GNFIPDEGIDEVKEILKHS 496 (541)
Q Consensus 429 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~-~N~i~~~g~~~l~~~l~~~ 496 (541)
|++--.+++..|++|||.+|.|... -+.+|..+ .|+.|.++ .+.+.|-.+..+.+-+.+.
T Consensus 407 ---I~krAfsgl~~LE~LdL~~NaiaSI----q~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~ 467 (873)
T KOG4194|consen 407 ---IPKRAFSGLEALEHLDLGDNAIASI----QPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRR 467 (873)
T ss_pred ---cchhhhccCcccceecCCCCcceee----cccccccc-hhhhhhhcccceEEeccHHHHHHHHHhc
Confidence 3333223899999999999999887 45566666 89999885 4567777778777776543
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=7.1e-24 Score=211.57 Aligned_cols=157 Identities=22% Similarity=0.248 Sum_probs=69.7
Q ss_pred HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHH
Q 009168 293 EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGA 372 (541)
Q Consensus 293 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 372 (541)
..+..+.+|..+++|.|.+.. +|+.+-++++|+.|+|++|.|+. +........+|++|+||.|.++ ..|
T Consensus 216 tsld~l~NL~dvDlS~N~Lp~-----vPecly~l~~LrrLNLS~N~ite-----L~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 216 TSLDDLHNLRDVDLSENNLPI-----VPECLYKLRNLRRLNLSGNKITE-----LNMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred CchhhhhhhhhccccccCCCc-----chHHHhhhhhhheeccCcCceee-----eeccHHHHhhhhhhccccchhc-cch
Confidence 333344444455555544442 34444444455555555554443 1222222334445555555444 234
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCC
Q 009168 373 EALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNS 452 (541)
Q Consensus 373 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 452 (541)
.+++. +++|+.|.+.+|.++-.+. ...+++...|+.+..++|.+. .++++++ .|..|+.|.|++|+
T Consensus 285 ~avcK-----L~kL~kLy~n~NkL~FeGi---PSGIGKL~~Levf~aanN~LE-----lVPEglc-RC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 285 DAVCK-----LTKLTKLYANNNKLTFEGI---PSGIGKLIQLEVFHAANNKLE-----LVPEGLC-RCVKLQKLKLDHNR 350 (1255)
T ss_pred HHHhh-----hHHHHHHHhccCcccccCC---ccchhhhhhhHHHHhhccccc-----cCchhhh-hhHHHHHhcccccc
Confidence 44443 2444555555554443221 112222244445555555444 3344444 45555555555554
Q ss_pred CChHHHHHHHHHHhcCCCccEEEecCC
Q 009168 453 MKRAGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 453 i~~~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
+-. ++.++.-++.|+.||+..|
T Consensus 351 LiT-----LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 351 LIT-----LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred eee-----chhhhhhcCCcceeeccCC
Confidence 443 4444444445555555544
No 12
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=99.83 E-value=2.3e-19 Score=162.96 Aligned_cols=189 Identities=23% Similarity=0.247 Sum_probs=138.9
Q ss_pred HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc---------ccCCCCCEEEcc
Q 009168 293 EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL---------PAFPDLTEVYLS 363 (541)
Q Consensus 293 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l---------~~~~~L~~L~L~ 363 (541)
+.+..||.|+..+||.|.++......+...+++.+.|.+|.|++|.+++.++..+..++ ..-|.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 34444555555555555555544444555555555555555555555555444444333 334789999999
Q ss_pred cCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHH-HHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCC
Q 009168 364 YLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLA-ACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQ 442 (541)
Q Consensus 364 ~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~ 442 (541)
.|++.......++..+..+ ..|+++.+..|.|...+...++ ..+..+++|+.|||..|-++..|-..++.+++ .-+.
T Consensus 166 rNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~ 243 (388)
T COG5238 166 RNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNL 243 (388)
T ss_pred cchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc-ccch
Confidence 9999875566666666654 7999999999999998776554 23556799999999999999999999999999 6667
Q ss_pred ccEEEccCCCCChHHHHHHHHHHh--cCCCccEEEecCCCCCh
Q 009168 443 LIEIDLSTNSMKRAGARLLAQVAV--NKPGLKMLNINGNFIPD 483 (541)
Q Consensus 443 L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~N~i~~ 483 (541)
|++|.+..|-++..|+.++...+. ..|+|..|...+|.+..
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 999999999999999999888874 46889999998887544
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=1e-22 Score=203.30 Aligned_cols=229 Identities=23% Similarity=0.252 Sum_probs=151.8
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
..|+.||||+|++... +..|...+++-.|+||+|+|....-..+.++ ..|-.||||+|++.. +|.-
T Consensus 103 ~dLt~lDLShNqL~Ev-----P~~LE~AKn~iVLNLS~N~IetIPn~lfinL----tDLLfLDLS~NrLe~-----LPPQ 168 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREV-----PTNLEYAKNSIVLNLSYNNIETIPNSLFINL----TDLLFLDLSNNRLEM-----LPPQ 168 (1255)
T ss_pred ccceeeecchhhhhhc-----chhhhhhcCcEEEEcccCccccCCchHHHhh----HhHhhhccccchhhh-----cCHH
Confidence 4788999999988753 4445666888899999998876544455554 678888999998876 7777
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+..+..|++|.|++|.+..-.+.. +..+++|+.|.+++.+-+-. .++..+..+.+|+.++||.|++. ..|..
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQ----LPsmtsL~vLhms~TqRTl~---N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQ----LPSMTSLSVLHMSNTQRTLD---NIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhc----Cccchhhhhhhcccccchhh---cCCCchhhhhhhhhccccccCCC-cchHH
Confidence 788888888888888876443322 33556667777776653321 25666666777777777777775 45665
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+.. +++|+.|+|++|.|+... .+...+.+|++|+||.|+++ .++.++. .+++|+.|.+.+|+++
T Consensus 241 ly~-----l~~LrrLNLS~N~iteL~-----~~~~~W~~lEtLNlSrNQLt-----~LP~avc-KL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 241 LYK-----LRNLRRLNLSGNKITELN-----MTEGEWENLETLNLSRNQLT-----VLPDAVC-KLTKLTKLYANNNKLT 304 (1255)
T ss_pred Hhh-----hhhhheeccCcCceeeee-----ccHHHHhhhhhhccccchhc-----cchHHHh-hhHHHHHHHhccCccc
Confidence 554 477777777777776532 22333466777777777776 5666666 6777777777777665
Q ss_pred hHHH--------------------HHHHHHHhcCCCccEEEecCCCC
Q 009168 455 RAGA--------------------RLLAQVAVNKPGLKMLNINGNFI 481 (541)
Q Consensus 455 ~~~~--------------------~~l~~~l~~~~~L~~L~L~~N~i 481 (541)
-.|+ ...+..+..|..|+.|.|+.|++
T Consensus 305 FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 305 FEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccce
Confidence 4441 01334455556666666666653
No 14
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.78 E-value=2.6e-19 Score=184.06 Aligned_cols=335 Identities=24% Similarity=0.325 Sum_probs=250.4
Q ss_pred ceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcC--CCeeEEEcCCCCCChhHH
Q 009168 155 YTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEG--SQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 155 l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~--~~L~~L~Ls~n~l~~~~~ 232 (541)
+..+.|.+|.+++.++..++..+... .+|..|+|++|.+++.+.. .+.+.+.. +.|++|++..|.++..+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~------~l~~~l~~~~~~l~~L~l~~c~l~~~g~ 161 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTL-PTLGQLDLSGNNLGDEGAR------LLCEGLRLPQCLLQTLELVSCSLTSEGA 161 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhccc-ccHhHhhcccCCCccHhHH------HHHhhcccchHHHHHHHhhcccccccch
Confidence 78889999999999998888888875 4899999999988865432 23333322 578888999999999999
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCC----CCCccEEEcCCCCCChHHHHHHHHHhhcCCC-ccEEEec
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPS----TEKLKVLHFHNNMTGDEGAVAISEIVKHSPA-LEDFRCS 307 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~ 307 (541)
..++..+..+..++.++++.|.+...+...+...+.. ..++++|++++|.++......+...+...+. +..|++.
T Consensus 162 ~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 162 APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHH
Confidence 9999998888889999999998887777777766664 6789999999999998888888888887777 7789999
Q ss_pred CCCCChhHHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCc
Q 009168 308 STRIGAEGGIALAKALGQC-THLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSL 386 (541)
Q Consensus 308 ~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L 386 (541)
+|.+.+.|+..+...+... ..+++++++.|.|+..+...+...+..++.++.|.++.|.+++.+...+...+... ..+
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~ 320 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPL 320 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccc
Confidence 9999999888888888877 78899999999999999999999999999999999999999988888888887775 556
Q ss_pred cEEEecCCCCCHHHH-HHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHH
Q 009168 387 EVLDLAGNDITAKAA-SSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVA 465 (541)
Q Consensus 387 ~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 465 (541)
..+-+.+++.....+ ..++.+......+.....+++...+.+...+..+....-..+..+++..+.+...+...++..+
T Consensus 321 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 400 (478)
T KOG4308|consen 321 LHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQL 400 (478)
T ss_pred hhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhh
Confidence 666666554433333 3333333333445555556666666666655555552333356666666666666666666666
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHHhcCc
Q 009168 466 VNKPGLKMLNINGNFIPDEGIDEVKEILKHSL 497 (541)
Q Consensus 466 ~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~ 497 (541)
..++.+..++++.|-..+++...+....+.+.
T Consensus 401 ~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~ 432 (478)
T KOG4308|consen 401 ASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG 432 (478)
T ss_pred hhcchhhhhhhhcCccchhhHHHHHHhhhhcc
Confidence 66666666666666666666666666666554
No 15
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=99.77 E-value=7.1e-19 Score=180.88 Aligned_cols=368 Identities=23% Similarity=0.283 Sum_probs=283.2
Q ss_pred CcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHH
Q 009168 123 QTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEAL 202 (541)
Q Consensus 123 l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l 202 (541)
+..++|.+|.+. ...++.+.+.+... .++..|++++|.+++.++..++..+......++.|++..|.++..+...+
T Consensus 89 l~~L~L~~~~l~---~~~~~~l~~~l~t~-~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLG---DRGAEELAQALKTL-PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccc---cchHHHHHHHhccc-ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHH
Confidence 677888888743 44666666666665 88999999999999889988888887754578888888888888765333
Q ss_pred HHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhc----CCCccEEEecCCCCCHHHHHHHHHhcCCCCC-ccEEE
Q 009168 203 EVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKS----QNNLEELHLMNDGISEEAAQAILELIPSTEK-LKVLH 277 (541)
Q Consensus 203 ~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~ 277 (541)
... ...+..++.++++.|.+...+...+...+.. ..++++|+|++|.++...+..+...+...+. +..|+
T Consensus 165 ~~~-----L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~ 239 (478)
T KOG4308|consen 165 AAV-----LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELD 239 (478)
T ss_pred HHH-----HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHH
Confidence 221 1134688999999998888888888877775 5679999999999998888888888887777 88899
Q ss_pred cCCCCCChHHHHHHHHHhhcC-CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCC
Q 009168 278 FHNNMTGDEGAVAISEIVKHS-PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPD 356 (541)
Q Consensus 278 Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 356 (541)
+.+|.+++.++..+...+... +.+++++++.|.|++.|...++..+..++.++.|.++.|.+.+.+...+...+.....
T Consensus 240 l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~ 319 (478)
T KOG4308|consen 240 LASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTP 319 (478)
T ss_pred HHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhccc
Confidence 999999999998888888877 7889999999999999999999999999999999999999999888888888888888
Q ss_pred CCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCC-ccEEEccCCCCChhHHHHHHHH
Q 009168 357 LTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQF-LTKLNLAENELQDEGAILIGKS 435 (541)
Q Consensus 357 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~ 435 (541)
+..+.+.+++...................+.....+++.........+.......+. +..+++..+.+.+.+...++..
T Consensus 320 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 399 (478)
T KOG4308|consen 320 LLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQ 399 (478)
T ss_pred chhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhh
Confidence 888888876655444433322222222344455556666666665555554444333 7778888888888888888877
Q ss_pred hhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcCcccc
Q 009168 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVL 500 (541)
Q Consensus 436 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l 500 (541)
+. .+..+..++++.|...+.+...+......+..++.+.++.|+++..|.....+....++...
T Consensus 400 ~~-~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 463 (478)
T KOG4308|consen 400 LA-SNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPITALGTEELQRALALNPGIL 463 (478)
T ss_pred hh-hcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhhhcchHHHHHHHhcCCCcc
Confidence 77 78888888888888888888888877766668888888888888888888888887765544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=1e-17 Score=180.09 Aligned_cols=270 Identities=17% Similarity=0.250 Sum_probs=199.5
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
.......||++++.+..+.. .+ + .+++.|++++|+++.-. ...++|++|+|++|.++..+
T Consensus 199 l~~~~~~LdLs~~~LtsLP~--------~l--~-~~L~~L~L~~N~Lt~LP---------~lp~~Lk~LdLs~N~LtsLP 258 (788)
T PRK15387 199 LNNGNAVLNVGESGLTTLPD--------CL--P-AHITTLVIPDNNLTSLP---------ALPPELRTLEVSGNQLTSLP 258 (788)
T ss_pred hcCCCcEEEcCCCCCCcCCc--------ch--h-cCCCEEEccCCcCCCCC---------CCCCCCcEEEecCCccCccc
Confidence 33556789999998653332 12 1 47999999999988421 12379999999999998765
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
. + ..+|+.|+|++|.++.. ... ..+|+.|+|++|+++... . ..++|+.|++
T Consensus 259 ~-----l--------p~sL~~L~Ls~N~L~~L-----p~l---p~~L~~L~Ls~N~Lt~LP-----~---~p~~L~~LdL 309 (788)
T PRK15387 259 V-----L--------PPGLLELSIFSNPLTHL-----PAL---PSGLCKLWIFGNQLTSLP-----V---LPPGLQELSV 309 (788)
T ss_pred C-----c--------ccccceeeccCCchhhh-----hhc---hhhcCEEECcCCcccccc-----c---cccccceeEC
Confidence 2 1 14899999999998742 222 256899999999987531 1 1368999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++|.+.. ++.. ...|+.|++++|.++. ++. ...+|+.|+|++|.|+. ++.. .++|+
T Consensus 310 S~N~L~~-----Lp~l---p~~L~~L~Ls~N~L~~-----LP~---lp~~Lq~LdLS~N~Ls~-----LP~l---p~~L~ 365 (788)
T PRK15387 310 SDNQLAS-----LPAL---PSELCKLWAYNNQLTS-----LPT---LPSGLQELSVSDNQLAS-----LPTL---PSELY 365 (788)
T ss_pred CCCcccc-----CCCC---cccccccccccCcccc-----ccc---cccccceEecCCCccCC-----CCCC---Ccccc
Confidence 9999886 4332 3468899999999874 222 12489999999999986 3332 35788
Q ss_pred EEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 359 EVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 359 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
.|++++|.|+. .+. + ..+|+.|++++|.|+.... ..++|+.|++++|.|+. ++.
T Consensus 366 ~L~Ls~N~L~~-LP~-l-------~~~L~~LdLs~N~Lt~LP~--------l~s~L~~LdLS~N~Lss-----IP~---- 419 (788)
T PRK15387 366 KLWAYNNRLTS-LPA-L-------PSGLKELIVSGNRLTSLPV--------LPSELKELMVSGNRLTS-----LPM---- 419 (788)
T ss_pred eehhhcccccc-Ccc-c-------ccccceEEecCCcccCCCC--------cccCCCEEEccCCcCCC-----CCc----
Confidence 99999999884 222 1 3679999999999985321 12689999999999983 332
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHH
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEI 492 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~ 492 (541)
...+|+.|++++|+|+. ++..+.+++.|+.|+|++|++++.....+...
T Consensus 420 l~~~L~~L~Ls~NqLt~-----LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 420 LPSGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred chhhhhhhhhccCcccc-----cChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 23468899999999986 77778889999999999999998877777554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=2.6e-17 Score=178.11 Aligned_cols=263 Identities=21% Similarity=0.272 Sum_probs=184.7
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
.+.+.|+++++.++. ++..++++|+.|+|++|.+...+.... .+|+.|+|++|.++..
T Consensus 178 ~~~~~L~L~~~~Lts--------LP~~Ip~~L~~L~Ls~N~LtsLP~~l~------------~nL~~L~Ls~N~LtsL-- 235 (754)
T PRK15370 178 NNKTELRLKILGLTT--------IPACIPEQITTLILDNNELKSLPENLQ------------GNIKTLYANSNQLTSI-- 235 (754)
T ss_pred cCceEEEeCCCCcCc--------CCcccccCCcEEEecCCCCCcCChhhc------------cCCCEEECCCCccccC--
Confidence 456889999887763 222234689999999998887653211 3799999999988743
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
+..+ ..+|+.|+|++|.+... +..+. .+|+.|++++|.+.. ++..+ .++|+.|++++|+++
T Consensus 236 ---P~~l--~~~L~~L~Ls~N~L~~L-P~~l~------s~L~~L~Ls~N~L~~-----LP~~l--~~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 236 ---PATL--PDTIQEMELSINRITEL-PERLP------SALQSLDLFHNKISC-----LPENL--PEELRYLSVYDNSIR 296 (754)
T ss_pred ---Chhh--hccccEEECcCCccCcC-ChhHh------CCCCEEECcCCccCc-----ccccc--CCCCcEEECCCCccc
Confidence 2112 14689999999988742 22221 479999999998875 55433 257999999999887
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEec
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLA 392 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 392 (541)
. ++..+. ++|+.|++++|.++. ++..+ .++|+.|++++|.++. .+..+ +++|+.|+++
T Consensus 297 ~-----LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------~~sL~~L~Ls 354 (754)
T PRK15370 297 T-----LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-LPASL-------PPELQVLDVS 354 (754)
T ss_pred c-----Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-CChhh-------cCcccEEECC
Confidence 4 332222 468889999998875 23322 3689999999998875 33333 3689999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCcc
Q 009168 393 GNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLK 472 (541)
Q Consensus 393 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 472 (541)
+|.|+.. +..+ .++|+.|+|++|.|+ .++..+. ..|+.|++++|+|+.. ...++......+.+.
T Consensus 355 ~N~L~~L-P~~l------p~~L~~LdLs~N~Lt-----~LP~~l~---~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~ 418 (754)
T PRK15370 355 KNQITVL-PETL------PPTITTLDVSRNALT-----NLPENLP---AALQIMQASRNNLVRL-PESLPHFRGEGPQPT 418 (754)
T ss_pred CCCCCcC-Chhh------cCCcCEEECCCCcCC-----CCCHhHH---HHHHHHhhccCCcccC-chhHHHHhhcCCCcc
Confidence 9998742 2222 268999999999988 3444443 3688999999998752 223455555668899
Q ss_pred EEEecCCCCChhHHHHHHHHHh
Q 009168 473 MLNINGNFIPDEGIDEVKEILK 494 (541)
Q Consensus 473 ~L~L~~N~i~~~g~~~l~~~l~ 494 (541)
.|+|.+|+++...+..+...+.
T Consensus 419 ~L~L~~Npls~~tl~~L~~Ll~ 440 (754)
T PRK15370 419 RIIVEYNPFSERTIQNMQRLMS 440 (754)
T ss_pred EEEeeCCCccHHHHHHHHHhhh
Confidence 9999999999888777766544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.9e-18 Score=180.70 Aligned_cols=273 Identities=25% Similarity=0.258 Sum_probs=142.8
Q ss_pred cceEEEeeCCCCCchHHHHHHHHHHHhccCccE-EEcCCCcCCCchHH---HHHHHHHHHhhh-----cCCCeeEEEcCC
Q 009168 154 SYTRICFSNKSFGLGASRVAAPILRLIKDQLTE-VDLSDFIAGRPEEE---ALEVINMFSSAL-----EGSQLRYLNLSH 224 (541)
Q Consensus 154 ~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~n~~~~~~~~---~l~~l~~~~~~l-----~~~~L~~L~Ls~ 224 (541)
.++++++..+.+.......+ ..+++ |||++|.++..... .++.+..-.+.+ .+.+|+.|+.++
T Consensus 157 ~ik~~~l~~n~l~~~~~~~i--------~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 157 SIKKLDLRLNVLGGSFLIDI--------YNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADH 228 (1081)
T ss_pred cchhhhhhhhhcccchhcch--------hhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeecc
Confidence 35566666655543211111 23444 88888877633322 223333233332 236778888888
Q ss_pred CCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEE
Q 009168 225 NALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDF 304 (541)
Q Consensus 225 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L 304 (541)
|.++..... ....+|+++++++|+++... .++. .|.+|+.++..+|.+.. ++..+....+|+.|
T Consensus 229 n~l~~~~~~------p~p~nl~~~dis~n~l~~lp-~wi~----~~~nle~l~~n~N~l~~-----lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 229 NPLTTLDVH------PVPLNLQYLDISHNNLSNLP-EWIG----ACANLEALNANHNRLVA-----LPLRISRITSLVSL 292 (1081)
T ss_pred Ccceeeccc------cccccceeeecchhhhhcch-HHHH----hcccceEecccchhHHh-----hHHHHhhhhhHHHH
Confidence 877632111 12245788888888776543 4433 34788888888887743 44444444444444
Q ss_pred EecCCCCChhHHHHHHHHhhcCCCcCEEEccCCC----------------------------------------------
Q 009168 305 RCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNM---------------------------------------------- 338 (541)
Q Consensus 305 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~---------------------------------------------- 338 (541)
.+..|.+.. ++..+...++|++|+|..|+
T Consensus 293 ~~~~nel~y-----ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 293 SAAYNELEY-----IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred Hhhhhhhhh-----CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 444444331 33333344444444444444
Q ss_pred ---CCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCcc
Q 009168 339 ---FGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLT 415 (541)
Q Consensus 339 ---l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 415 (541)
+++. ....|..+++|+.|+|++|+++......+.+ +..|+.|+|+||.++.. ...+..++.|+
T Consensus 368 nN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k-----le~LeeL~LSGNkL~~L-----p~tva~~~~L~ 433 (1081)
T KOG0618|consen 368 NNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFPASKLRK-----LEELEELNLSGNKLTTL-----PDTVANLGRLH 433 (1081)
T ss_pred cCccccc----chhhhccccceeeeeecccccccCCHHHHhc-----hHHhHHHhcccchhhhh-----hHHHHhhhhhH
Confidence 4433 1333344444555555555444322222211 24444555555544432 12222234555
Q ss_pred EEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 416 KLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 416 ~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
+|..-+|.|. .++ .+. .+++|+.+|++.|+++... +...+ ..++|++||++||.
T Consensus 434 tL~ahsN~l~-----~fP-e~~-~l~qL~~lDlS~N~L~~~~---l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-----SFP-ELA-QLPQLKVLDLSCNNLSEVT---LPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-----ech-hhh-hcCcceEEecccchhhhhh---hhhhC-CCcccceeeccCCc
Confidence 5555555544 333 344 6889999999999999863 22222 22889999999997
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=1.3e-18 Score=166.08 Aligned_cols=90 Identities=22% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChh--------HHH----------HH-HHHhhhcCCCc
Q 009168 383 APSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDE--------GAI----------LI-GKSLEEGHGQL 443 (541)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~--------g~~----------~l-~~~l~~~~~~L 443 (541)
+++|..|+|++|.+.+. |..+..+ ..|+.||++.|.+... +.. .+ +.++. ++.+|
T Consensus 434 l~kLt~L~L~NN~Ln~L-P~e~~~l----v~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~-nm~nL 507 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDL-PEEMGSL----VRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK-NMRNL 507 (565)
T ss_pred hhcceeeecccchhhhc-chhhhhh----hhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhh-hhhhc
Confidence 46777777777766543 3344444 4577777777765410 000 11 12355 78899
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 444 IEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 444 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
..|||.+|.|.. ++..++++.+|++|+|+||+|+.
T Consensus 508 ~tLDL~nNdlq~-----IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 508 TTLDLQNNDLQQ-----IPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ceeccCCCchhh-----CChhhccccceeEEEecCCccCC
Confidence 999999998877 88999999999999999999985
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.67 E-value=1.2e-17 Score=174.82 Aligned_cols=208 Identities=21% Similarity=0.210 Sum_probs=144.3
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHH--HHHHH----h---------------hcCCCc
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAV--AISEI----V---------------KHSPAL 301 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~----l---------------~~~~~L 301 (541)
++|+.|.+.+|.+. .+...+...++|++|+|..|++...... .+... + ...+.|
T Consensus 287 ~~L~~l~~~~nel~-----yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELE-----YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred hhHHHHHhhhhhhh-----hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 44444444444332 2223334467999999999988763211 11111 1 112457
Q ss_pred cEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhh
Q 009168 302 EDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKE 381 (541)
Q Consensus 302 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 381 (541)
+.|.+.+|++++. ....+.+.++|+.|+|++|++.... ...+.+++.|++|+||+|.++. .+..++.
T Consensus 362 q~LylanN~Ltd~----c~p~l~~~~hLKVLhLsyNrL~~fp----as~~~kle~LeeL~LSGNkL~~-Lp~tva~---- 428 (1081)
T KOG0618|consen 362 QELYLANNHLTDS----CFPVLVNFKHLKVLHLSYNRLNSFP----ASKLRKLEELEELNLSGNKLTT-LPDTVAN---- 428 (1081)
T ss_pred HHHHHhcCccccc----chhhhccccceeeeeecccccccCC----HHHHhchHHhHHHhcccchhhh-hhHHHHh----
Confidence 7889999999987 4455788999999999999987532 5567788999999999999985 5566665
Q ss_pred cCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHH
Q 009168 382 CAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLL 461 (541)
Q Consensus 382 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l 461 (541)
++.|++|...+|.+.... .++.. +.|+.+|+|.|+|+.. .+..++. -++|++|||+||.=... -
T Consensus 429 -~~~L~tL~ahsN~l~~fP--e~~~l----~qL~~lDlS~N~L~~~---~l~~~~p--~p~LkyLdlSGN~~l~~----d 492 (1081)
T KOG0618|consen 429 -LGRLHTLRAHSNQLLSFP--ELAQL----PQLKVLDLSCNNLSEV---TLPEALP--SPNLKYLDLSGNTRLVF----D 492 (1081)
T ss_pred -hhhhHHHhhcCCceeech--hhhhc----CcceEEecccchhhhh---hhhhhCC--CcccceeeccCCccccc----c
Confidence 589999999999987643 55555 9999999999999853 3334333 38999999999963222 1
Q ss_pred HHHHhcCCCccEEEecCCCCChh
Q 009168 462 AQVAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 462 ~~~l~~~~~L~~L~L~~N~i~~~ 484 (541)
-..+..+..+...+++-|+..+.
T Consensus 493 ~~~l~~l~~l~~~~i~~~~~~d~ 515 (1081)
T KOG0618|consen 493 HKTLKVLKSLSQMDITLNNTPDG 515 (1081)
T ss_pred hhhhHHhhhhhheecccCCCCcc
Confidence 23455667788888877755543
No 21
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=1e-18 Score=166.83 Aligned_cols=278 Identities=24% Similarity=0.272 Sum_probs=211.0
Q ss_pred cceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHH
Q 009168 154 SYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVR 233 (541)
Q Consensus 154 ~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~ 233 (541)
.++++.+++|.+..-. .-+... ..+++|++++|.+...++...+.. .++.|+.++|.+..
T Consensus 46 ~l~~lils~N~l~~l~-----~dl~nL-~~l~vl~~~~n~l~~lp~aig~l~----------~l~~l~vs~n~ls~---- 105 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLR-----EDLKNL-ACLTVLNVHDNKLSQLPAAIGELE----------ALKSLNVSHNKLSE---- 105 (565)
T ss_pred chhhhhhccCchhhcc-----Hhhhcc-cceeEEEeccchhhhCCHHHHHHH----------HHHHhhcccchHhh----
Confidence 6677888888765311 112221 478999999998888876554433 67888999998874
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCCh
Q 009168 234 AFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGA 313 (541)
Q Consensus 234 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 313 (541)
++..+.+..++..|+.++|.+... ...+... -.|..|+..+|++.. ++..+.++.++..+++.+|++..
T Consensus 106 -lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~----~~l~dl~~~~N~i~s-----lp~~~~~~~~l~~l~~~~n~l~~ 174 (565)
T KOG0472|consen 106 -LPEQIGSLISLVKLDCSSNELKEL-PDSIGRL----LDLEDLDATNNQISS-----LPEDMVNLSKLSKLDLEGNKLKA 174 (565)
T ss_pred -ccHHHhhhhhhhhhhccccceeec-CchHHHH----hhhhhhhcccccccc-----CchHHHHHHHHHHhhccccchhh
Confidence 344455568899999999987642 2334444 588889999999887 78888888899999999999874
Q ss_pred hHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecC
Q 009168 314 EGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAG 393 (541)
Q Consensus 314 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 393 (541)
++...-.++.|++||...|.++. ++.-++.+.+|..|+|..|.|.. .| .|.. |..|.+|+++.
T Consensus 175 -----l~~~~i~m~~L~~ld~~~N~L~t-----lP~~lg~l~~L~~LyL~~Nki~~-lP-ef~g-----cs~L~Elh~g~ 237 (565)
T KOG0472|consen 175 -----LPENHIAMKRLKHLDCNSNLLET-----LPPELGGLESLELLYLRRNKIRF-LP-EFPG-----CSLLKELHVGE 237 (565)
T ss_pred -----CCHHHHHHHHHHhcccchhhhhc-----CChhhcchhhhHHHHhhhccccc-CC-CCCc-----cHHHHHHHhcc
Confidence 44555558899999999998876 68888999999999999998863 22 3432 67899999999
Q ss_pred CCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccE
Q 009168 394 NDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKM 473 (541)
Q Consensus 394 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 473 (541)
|.|.-..++... ..++|..|||+.|+++ .+++.+. .+++|.+||+|+|.|+. ++..++++ +|+.
T Consensus 238 N~i~~lpae~~~----~L~~l~vLDLRdNklk-----e~Pde~c-lLrsL~rLDlSNN~is~-----Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 238 NQIEMLPAEHLK----HLNSLLVLDLRDNKLK-----EVPDEIC-LLRSLERLDLSNNDISS-----LPYSLGNL-HLKF 301 (565)
T ss_pred cHHHhhHHHHhc----ccccceeeeccccccc-----cCchHHH-HhhhhhhhcccCCcccc-----CCcccccc-eeee
Confidence 998765544433 4489999999999999 6677777 88999999999999998 77778888 9999
Q ss_pred EEecCCCCCh-------hHHHHHHHHHhc
Q 009168 474 LNINGNFIPD-------EGIDEVKEILKH 495 (541)
Q Consensus 474 L~L~~N~i~~-------~g~~~l~~~l~~ 495 (541)
|-+.||++.. .|..++.+.+..
T Consensus 302 L~leGNPlrTiRr~ii~~gT~~vLKyLrs 330 (565)
T KOG0472|consen 302 LALEGNPLRTIRREIISKGTQEVLKYLRS 330 (565)
T ss_pred hhhcCCchHHHHHHHHcccHHHHHHHHHH
Confidence 9999999753 445555555543
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=1.9e-15 Score=162.81 Aligned_cols=245 Identities=19% Similarity=0.171 Sum_probs=182.4
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.++.|++++|.+..+.. ..++|++|+|++|.+..-. ...++|+.|+|++|.+...+.
T Consensus 222 ~~L~~L~L~~N~Lt~LP~------------lp~~Lk~LdLs~N~LtsLP---------~lp~sL~~L~Ls~N~L~~Lp~- 279 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPA------------LPPELRTLEVSGNQLTSLP---------VLPPGLLELSIFSNPLTHLPA- 279 (788)
T ss_pred cCCCEEEccCCcCCCCCC------------CCCCCcEEEecCCccCccc---------CcccccceeeccCCchhhhhh-
Confidence 578999999998653321 1279999999999987421 123689999999998876542
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHN 280 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 280 (541)
+. .+|+.|+|++|+++.. +. ..++|+.|+|++|.++... .. ...|+.|++++
T Consensus 280 ----lp--------~~L~~L~Ls~N~Lt~L-----P~---~p~~L~~LdLS~N~L~~Lp-----~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 280 ----LP--------SGLCKLWIFGNQLTSL-----PV---LPPGLQELSVSDNQLASLP-----AL---PSELCKLWAYN 331 (788)
T ss_pred ----ch--------hhcCEEECcCCccccc-----cc---cccccceeECCCCccccCC-----CC---ccccccccccc
Confidence 10 3799999999999853 21 1367999999999987531 11 24788999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEE
Q 009168 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEV 360 (541)
Q Consensus 281 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 360 (541)
|.++. ++.. ..+|+.|+|++|+++. ++. ...+|+.|++++|.|+. ++.. ..+|+.|
T Consensus 332 N~L~~-----LP~l---p~~Lq~LdLS~N~Ls~-----LP~---lp~~L~~L~Ls~N~L~~-----LP~l---~~~L~~L 387 (788)
T PRK15387 332 NQLTS-----LPTL---PSGLQELSVSDNQLAS-----LPT---LPSELYKLWAYNNRLTS-----LPAL---PSGLKEL 387 (788)
T ss_pred Ccccc-----cccc---ccccceEecCCCccCC-----CCC---CCcccceehhhcccccc-----Cccc---ccccceE
Confidence 99875 4432 2579999999999984 332 23578899999999885 3332 2579999
Q ss_pred EcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC
Q 009168 361 YLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH 440 (541)
Q Consensus 361 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 440 (541)
++++|.|+.. +. + .++|+.|++++|.|+... . + ..+|+.|+|++|.|+ .|+..+. .+
T Consensus 388 dLs~N~Lt~L-P~-l-------~s~L~~LdLS~N~LssIP-~-l------~~~L~~L~Ls~NqLt-----~LP~sl~-~L 444 (788)
T PRK15387 388 IVSGNRLTSL-PV-L-------PSELKELMVSGNRLTSLP-M-L------PSGLLSLSVYRNQLT-----RLPESLI-HL 444 (788)
T ss_pred EecCCcccCC-CC-c-------ccCCCEEEccCCcCCCCC-c-c------hhhhhhhhhccCccc-----ccChHHh-hc
Confidence 9999999842 21 1 268999999999998532 1 1 246899999999998 5777777 89
Q ss_pred CCccEEEccCCCCChHHHHHHH
Q 009168 441 GQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
+.|+.|+|++|.|+......+.
T Consensus 445 ~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 445 SSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred cCCCeEECCCCCCCchHHHHHH
Confidence 9999999999999987555443
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.59 E-value=2.7e-15 Score=162.48 Aligned_cols=260 Identities=18% Similarity=0.190 Sum_probs=183.3
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
.....+.|+++++.+..+.. .+ + ..++.|+|++|.+..-. .....+|++|+|++|.+...+
T Consensus 176 l~~~~~~L~L~~~~LtsLP~--------~I--p-~~L~~L~Ls~N~LtsLP--------~~l~~nL~~L~Ls~N~LtsLP 236 (754)
T PRK15370 176 LKNNKTELRLKILGLTTIPA--------CI--P-EQITTLILDNNELKSLP--------ENLQGNIKTLYANSNQLTSIP 236 (754)
T ss_pred cccCceEEEeCCCCcCcCCc--------cc--c-cCCcEEEecCCCCCcCC--------hhhccCCCEEECCCCccccCC
Confidence 34557899999887643322 12 1 57999999999988422 122358999999999988765
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
... . .+|+.|+|++|.+.... ..+ ..+|+.|+|++|+++.. +.. + .++|+.|++
T Consensus 237 ~~l----~--------~~L~~L~Ls~N~L~~LP-----~~l--~s~L~~L~Ls~N~L~~L-P~~----l--~~sL~~L~L 290 (754)
T PRK15370 237 ATL----P--------DTIQEMELSINRITELP-----ERL--PSALQSLDLFHNKISCL-PEN----L--PEELRYLSV 290 (754)
T ss_pred hhh----h--------ccccEEECcCCccCcCC-----hhH--hCCCCEEECcCCccCcc-ccc----c--CCCCcEEEC
Confidence 321 1 37999999999998532 122 15799999999998742 221 2 258999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++|.+.. ++..+. ++|+.|++++|.+.. ++..+ .++|+.|++++|.++. ++..+ .++|+
T Consensus 291 s~N~Lt~-----LP~~lp--~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~~L~Ls~N~Lt~-----LP~~l--~~sL~ 349 (754)
T PRK15370 291 YDNSIRT-----LPAHLP--SGITHLNVQSNSLTA-----LPETL--PPGLKTLEAGENALTS-----LPASL--PPELQ 349 (754)
T ss_pred CCCcccc-----Ccccch--hhHHHHHhcCCcccc-----CCccc--cccceeccccCCcccc-----CChhh--cCccc
Confidence 9999885 443332 478999999999874 23222 3689999999999876 34433 36899
Q ss_pred EEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 359 EVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 359 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
.|++++|+|+. .+..+ .++|+.|+|++|.++.. +..+. ..|+.|++++|.|... +..++....
T Consensus 350 ~L~Ls~N~L~~-LP~~l-------p~~L~~LdLs~N~Lt~L-P~~l~------~sL~~LdLs~N~L~~L-P~sl~~~~~- 412 (754)
T PRK15370 350 VLDVSKNQITV-LPETL-------PPTITTLDVSRNALTNL-PENLP------AALQIMQASRNNLVRL-PESLPHFRG- 412 (754)
T ss_pred EEECCCCCCCc-CChhh-------cCCcCEEECCCCcCCCC-CHhHH------HHHHHHhhccCCcccC-chhHHHHhh-
Confidence 99999999974 33333 26899999999999853 33332 3699999999999832 222333333
Q ss_pred cCCCccEEEccCCCCChHHHHHH
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLL 461 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l 461 (541)
.++.+..|+|.+|.|+......+
T Consensus 413 ~~~~l~~L~L~~Npls~~tl~~L 435 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSERTIQNM 435 (754)
T ss_pred cCCCccEEEeeCCCccHHHHHHH
Confidence 56889999999999987644433
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=4.3e-16 Score=148.87 Aligned_cols=298 Identities=17% Similarity=0.148 Sum_probs=184.3
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEE-EcCCCCCChhH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYL-NLSHNALGEKG 231 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L-~Ls~n~l~~~~ 231 (541)
+..+.|.|..|+|......+|..+ ++|+.||||+|+|+.+.+.+++.+. +|..| ++++|+|++..
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l-----~~LRrLdLS~N~Is~I~p~AF~GL~---------~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTL-----HRLRRLDLSKNNISFIAPDAFKGLA---------SLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcceEEEeccCCcccCChhhccch-----hhhceecccccchhhcChHhhhhhH---------hhhHHHhhcCCchhhhh
Confidence 466777777777776666555555 5777778877777777777777665 44443 44447777766
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH-HhhcCCCccEEEecCCC
Q 009168 232 VRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE-IVKHSPALEDFRCSSTR 310 (541)
Q Consensus 232 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~ 310 (541)
...|..+ ..|+.|.+.-|++.-.-..++.++ ++|..|.+.+|.+.. ++. .+.....++.+.+..|.
T Consensus 133 k~~F~gL----~slqrLllNan~i~Cir~~al~dL----~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 133 KGAFGGL----SSLQRLLLNANHINCIRQDALRDL----PSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHhhhH----HHHHHHhcChhhhcchhHHHHHHh----hhcchhcccchhhhh-----hccccccchhccchHhhhcCc
Confidence 6555554 667777777777766555555555 677777777776654 443 45556667777766665
Q ss_pred CCh-hHHHHHHH-------HhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhc
Q 009168 311 IGA-EGGIALAK-------ALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKEC 382 (541)
Q Consensus 311 i~~-~~~~~l~~-------~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 382 (541)
+-. -.+..++. .++.........+.+.++.......+... ...+..=-.+.+......+..-+ +.
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf----~~ 272 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCF----KK 272 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHH----hh
Confidence 211 11111111 11222222223333333332221111111 11111111122223333333222 23
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 383 APSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
+++|+.|+|++|.|+......|..+ ..++.|.|..|+|. .+......++..|+.|+|.+|+|+.. -+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~aFe~~----a~l~eL~L~~N~l~-----~v~~~~f~~ls~L~tL~L~~N~it~~----~~ 339 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDGAFEGA----AELQELYLTRNKLE-----FVSSGMFQGLSGLKTLSLYDNQITTV----AP 339 (498)
T ss_pred cccceEeccCCCccchhhhhhhcch----hhhhhhhcCcchHH-----HHHHHhhhccccceeeeecCCeeEEE----ec
Confidence 6999999999999999888887777 88999999999987 34444433899999999999999997 55
Q ss_pred HHHhcCCCccEEEecCCCCCh-hHHHHHHHHHhcCc
Q 009168 463 QVAVNKPGLKMLNINGNFIPD-EGIDEVKEILKHSL 497 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~-~g~~~l~~~l~~~~ 497 (541)
.+|.....|.+|+|-.|++.- --+..+.+-+.++.
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 667777889999999998765 44667777676654
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.52 E-value=1.1e-15 Score=146.10 Aligned_cols=273 Identities=22% Similarity=0.231 Sum_probs=190.0
Q ss_pred HHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecC-C
Q 009168 175 PILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMN-D 253 (541)
Q Consensus 175 ~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n 253 (541)
.++..+++..++|+|..|+|+.++..++..+. +|+.||||+|+|+..+..+|..+ .+|.+|.+-+ |
T Consensus 60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~---------~LRrLdLS~N~Is~I~p~AF~GL----~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLH---------RLRRLDLSKNNISFIAPDAFKGL----ASLLSLVLYGNN 126 (498)
T ss_pred cCcccCCCcceEEEeccCCcccCChhhccchh---------hhceecccccchhhcChHhhhhh----HhhhHHHhhcCC
Confidence 55666678999999999999999999988885 99999999999999888887666 7766665555 8
Q ss_pred CCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHH-HhhcCCCcCEE
Q 009168 254 GISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAK-ALGQCTHLKKL 332 (541)
Q Consensus 254 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L 332 (541)
+|+......|..+ ..|+.|.+.-|.+.- ...+.+..++++..|.+..|.+.. ++. .+.....++.+
T Consensus 127 kI~~l~k~~F~gL----~slqrLllNan~i~C----ir~~al~dL~~l~lLslyDn~~q~-----i~~~tf~~l~~i~tl 193 (498)
T KOG4237|consen 127 KITDLPKGAFGGL----SSLQRLLLNANHINC----IRQDALRDLPSLSLLSLYDNKIQS-----ICKGTFQGLAAIKTL 193 (498)
T ss_pred chhhhhhhHhhhH----HHHHHHhcChhhhcc----hhHHHHHHhhhcchhcccchhhhh-----hccccccchhccchH
Confidence 9988766666555 688899998888765 244677788999999999998763 333 46677888888
Q ss_pred EccCCCCCc-hHHH-------HHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEE--E-ecCCCCCHHHH
Q 009168 333 DLRDNMFGV-EAGV-------ALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVL--D-LAGNDITAKAA 401 (541)
Q Consensus 333 ~L~~n~l~~-~~~~-------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L--~-L~~n~l~~~~~ 401 (541)
.+..|.+-. -... ..+..++.........+.+.++.......+.. .++.+ . .+.+......+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c-------~~esl~s~~~~~d~~d~~cP 266 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC-------SLESLPSRLSSEDFPDSICP 266 (498)
T ss_pred hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh-------hHHhHHHhhccccCcCCcCh
Confidence 888887322 1111 11112222233333445555554444443322 12222 1 22333333333
Q ss_pred HHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCC
Q 009168 402 SSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFI 481 (541)
Q Consensus 402 ~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i 481 (541)
+.++...++|++|+|++|+|+. |.++.+.+...+++|.|..|+|... -..+|.+...|+.|+|.+|+|
T Consensus 267 ---~~cf~~L~~L~~lnlsnN~i~~-----i~~~aFe~~a~l~eL~L~~N~l~~v----~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 267 ---AKCFKKLPNLRKLNLSNNKITR-----IEDGAFEGAAELQELYLTRNKLEFV----SSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred ---HHHHhhcccceEeccCCCccch-----hhhhhhcchhhhhhhhcCcchHHHH----HHHhhhccccceeeeecCCee
Confidence 2346667999999999999994 4444433889999999999999875 456678889999999999999
Q ss_pred ChhHHHHHHHH
Q 009168 482 PDEGIDEVKEI 492 (541)
Q Consensus 482 ~~~g~~~l~~~ 492 (541)
+.-..-++...
T Consensus 335 t~~~~~aF~~~ 345 (498)
T KOG4237|consen 335 TTVAPGAFQTL 345 (498)
T ss_pred EEEeccccccc
Confidence 87554444443
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.49 E-value=6.3e-14 Score=135.31 Aligned_cols=310 Identities=17% Similarity=0.128 Sum_probs=220.8
Q ss_pred CCCCcceEEEeeCC-CCCchHHHHHHHHHHHhccCccEEEcCCC-cCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCC-C
Q 009168 150 EPGNSYTRICFSNK-SFGLGASRVAAPILRLIKDQLTEVDLSDF-IAGRPEEEALEVINMFSSALEGSQLRYLNLSHN-A 226 (541)
Q Consensus 150 ~~~~~l~~L~Ls~~-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n-~ 226 (541)
..+..+++|.+.|+ ..++...+.+... .+++++|++.++ .+++.....+.. ..++|++|+|..+ .
T Consensus 135 Rcgg~lk~LSlrG~r~v~~sslrt~~~~----CpnIehL~l~gc~~iTd~s~~sla~--------~C~~l~~l~L~~c~~ 202 (483)
T KOG4341|consen 135 RCGGFLKELSLRGCRAVGDSSLRTFASN----CPNIEHLALYGCKKITDSSLLSLAR--------YCRKLRHLNLHSCSS 202 (483)
T ss_pred hhccccccccccccccCCcchhhHHhhh----CCchhhhhhhcceeccHHHHHHHHH--------hcchhhhhhhcccch
Confidence 33467888888888 4555555444433 368888888776 344432222211 2368888898885 7
Q ss_pred CChhHHHHHHHHhhcCCCccEEEecCCC-CCHHHHHHHHHhcCCCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCccEE
Q 009168 227 LGEKGVRAFGALLKSQNNLEELHLMNDG-ISEEAAQAILELIPSTEKLKVLHFHNNM-TGDEGAVAISEIVKHSPALEDF 304 (541)
Q Consensus 227 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L 304 (541)
+++...+.++.. |++|++|+++.|. |++.+++.+. ..+..++.+.+.+|. ++. ..+..+-..++.+..+
T Consensus 203 iT~~~Lk~la~g---C~kL~~lNlSwc~qi~~~gv~~~~---rG~~~l~~~~~kGC~e~~l---e~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 203 ITDVSLKYLAEG---CRKLKYLNLSWCPQISGNGVQALQ---RGCKELEKLSLKGCLELEL---EALLKAAAYCLEILKL 273 (483)
T ss_pred hHHHHHHHHHHh---hhhHHHhhhccCchhhcCcchHHh---ccchhhhhhhhcccccccH---HHHHHHhccChHhhcc
Confidence 788776666555 7889999999884 6665555554 344567777777653 333 2344444566777788
Q ss_pred EecCC-CCChhHHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHhcccCCCCCEEEcccC-CCChhHHHHHHHHHhh
Q 009168 305 RCSST-RIGAEGGIALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEVLPAFPDLTEVYLSYL-NLEDEGAEALAGALKE 381 (541)
Q Consensus 305 ~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~ 381 (541)
++..| .+++.+... .-..+..|+.|+.+++. +++.. +-..-.++++|+.|-+..+ ++++.+...++ .
T Consensus 274 nl~~c~~lTD~~~~~---i~~~c~~lq~l~~s~~t~~~d~~---l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~----r 343 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWL---IACGCHALQVLCYSSCTDITDEV---LWALGQHCHNLQVLELSGCQQFSDRGFTMLG----R 343 (483)
T ss_pred chhhhccccchHHHH---HhhhhhHhhhhcccCCCCCchHH---HHHHhcCCCceEEEeccccchhhhhhhhhhh----c
Confidence 87665 577776443 33567889999998876 44433 3444456789999999998 47777766665 4
Q ss_pred cCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHH
Q 009168 382 CAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARL 460 (541)
Q Consensus 382 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 460 (541)
+++.|+.+++..+.....+ .++.+-.+++.|++|.|++| .++|+|...+...-. ....|..+.|+++....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~--tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c-~~~~l~~lEL~n~p~i~d~--- 417 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDG--TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC-SLEGLEVLELDNCPLITDA--- 417 (483)
T ss_pred CChhhhhhcccccceehhh--hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc-cccccceeeecCCCCchHH---
Confidence 6899999999999877655 57777778899999999999 488898888777666 7899999999999765542
Q ss_pred HHHHHhcCCCccEEEecCC-CCChhHHHHHHHHHhcC
Q 009168 461 LAQVAVNKPGLKMLNINGN-FIPDEGIDEVKEILKHS 496 (541)
Q Consensus 461 l~~~l~~~~~L~~L~L~~N-~i~~~g~~~l~~~l~~~ 496 (541)
.-+.+..|++|+.+++-++ .++.+++..++..+++.
T Consensus 418 ~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 418 TLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred HHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 5556778999999999888 58999999999988764
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.46 E-value=1.2e-13 Score=159.67 Aligned_cols=290 Identities=15% Similarity=0.102 Sum_probs=161.6
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCC-cCCCch
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDF-IAGRPE 198 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~~~~~~ 198 (541)
.+.++.|.+.++.+..+.. .+. ..+|+.|+|+++.+..- ...+.. -++|+.|+|+++ .++..+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~--------~f~--~~~L~~L~L~~s~l~~L-----~~~~~~-l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPS--------NFR--PENLVKLQMQGSKLEKL-----WDGVHS-LTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred CcccEEEEecCCCCCCCCC--------cCC--ccCCcEEECcCcccccc-----cccccc-CCCCCEEECCCCCCcCcCC
Confidence 3568889998887653332 221 25888888888876531 111111 158888888875 344443
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
. +.. .++|+.|+|++|..-. .++..+..+++|+.|++++|..-...+.. + .+++|+.|+|
T Consensus 652 ~--ls~---------l~~Le~L~L~~c~~L~----~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~L 711 (1153)
T PLN03210 652 D--LSM---------ATNLETLKLSDCSSLV----ELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNL 711 (1153)
T ss_pred c--ccc---------CCcccEEEecCCCCcc----ccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeC
Confidence 1 111 2578888888874322 23344556678888888876422211111 1 3467777777
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHH------------------------HHH-HHHhhcCCCcCEEE
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGG------------------------IAL-AKALGQCTHLKKLD 333 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~------------------------~~l-~~~l~~~~~L~~L~ 333 (541)
++|..-. .++. ...+|+.|++++|.+..-.. ..+ +......++|+.|+
T Consensus 712 sgc~~L~----~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 712 SGCSRLK----SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCCCcc----cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 7664221 1221 12456666666665432100 000 00011235677777
Q ss_pred ccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCC
Q 009168 334 LRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQF 413 (541)
Q Consensus 334 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 413 (541)
|++|..... ++..+..+++|+.|++++|..-...+..+ ++++|+.|++++|..-...+. ..++
T Consensus 785 Ls~n~~l~~----lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------~L~sL~~L~Ls~c~~L~~~p~-------~~~n 847 (1153)
T PLN03210 785 LSDIPSLVE----LPSSIQNLHKLEHLEIENCINLETLPTGI------NLESLESLDLSGCSRLRTFPD-------ISTN 847 (1153)
T ss_pred CCCCCCccc----cChhhhCCCCCCEEECCCCCCcCeeCCCC------CccccCEEECCCCCccccccc-------cccc
Confidence 777653322 45566777777888877764222222221 246777788777743222111 1256
Q ss_pred ccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCC-CCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 414 LTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTN-SMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 414 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
|+.|+|++|.|+ .++..+. .+++|+.|+|++| .+.. ++..+..+++|+.+++++|.
T Consensus 848 L~~L~Ls~n~i~-----~iP~si~-~l~~L~~L~L~~C~~L~~-----l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 848 ISDLNLSRTGIE-----EVPWWIE-KFSNLSFLDMNGCNNLQR-----VSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEeECCCCCCc-----cChHHHh-cCCCCCEEECCCCCCcCc-----cCcccccccCCCeeecCCCc
Confidence 888888888777 4555666 7788888888875 4443 33344566777777777773
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.41 E-value=3.8e-13 Score=155.41 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=54.1
Q ss_pred CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHH
Q 009168 356 DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKS 435 (541)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 435 (541)
+|+.|+|++|......+..+.. +++|+.|++++|..-...+..+ ..++|+.|+|++|..-. .++.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~-----L~~L~~L~Ls~C~~L~~LP~~~-----~L~sL~~L~Ls~c~~L~----~~p~- 843 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQN-----LHKLEHLEIENCINLETLPTGI-----NLESLESLDLSGCSRLR----TFPD- 843 (1153)
T ss_pred cchheeCCCCCCccccChhhhC-----CCCCCEEECCCCCCcCeeCCCC-----CccccCEEECCCCCccc----cccc-
Confidence 4455555554333333333322 4556666665553211111111 23556666666553211 1111
Q ss_pred hhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCC
Q 009168 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 436 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
..++|++|+|++|.|+. ++..+..+++|+.|+|++|
T Consensus 844 ---~~~nL~~L~Ls~n~i~~-----iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 844 ---ISTNISDLNLSRTGIEE-----VPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred ---cccccCEeECCCCCCcc-----ChHHHhcCCCCCEEECCCC
Confidence 24567888888888875 6667788888999999885
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=4.4e-12 Score=117.50 Aligned_cols=200 Identities=21% Similarity=0.290 Sum_probs=112.6
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHh
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEV 350 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 350 (541)
.|++|||++..|+... +-..++.|..|+.|.+.++++.+. ++..++.+.+|+.|+|+.+. |+..+. .-.
T Consensus 186 Rlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~---~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENAL---QLL 255 (419)
T ss_pred hhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHH---HHH
Confidence 4666666666555432 334455566666666666666654 55556666677777776654 555442 333
Q ss_pred cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGA 429 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~ 429 (541)
+..|+.|.+|+|++|.+....+..+...+ -++|..|+|+|+.-. .....++-+...|++|..||||.| .|++ ++
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~Vtv~V~hi---se~l~~LNlsG~rrn-l~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~ 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEKVTVAVAHI---SETLTQLNLSGYRRN-LQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DC 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchhhhHHHhhh---chhhhhhhhhhhHhh-hhhhHHHHHHHhCCceeeeccccccccCc-hH
Confidence 45566677777777766554443333322 256677777766211 112244555566777777777766 4555 22
Q ss_pred HHHHHHhhhcCCCccEEEccCCC-CChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNS-MKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
...+. ..+.|++|.++.|. |...- + -.+...|+|.+||+.|+ ++|..++-+.+++++
T Consensus 331 ---~~~~~-kf~~L~~lSlsRCY~i~p~~---~-~~l~s~psl~yLdv~g~-vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 331 ---FQEFF-KFNYLQHLSLSRCYDIIPET---L-LELNSKPSLVYLDVFGC-VSDTTMELLKEMLSH 388 (419)
T ss_pred ---HHHHH-hcchheeeehhhhcCCChHH---e-eeeccCcceEEEEeccc-cCchHHHHHHHhCcc
Confidence 22333 56777777777774 22221 1 12345677777777765 344456666666654
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.35 E-value=1e-12 Score=127.02 Aligned_cols=302 Identities=20% Similarity=0.224 Sum_probs=212.9
Q ss_pred CCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCc-CCCchHHHHHHHHHHHhhhcCCCeeEEEcCCC-CCC
Q 009168 151 PGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFI-AGRPEEEALEVINMFSSALEGSQLRYLNLSHN-ALG 228 (541)
Q Consensus 151 ~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n-~l~ 228 (541)
....+++++|..-+...++ .+++.++......|+.|.|+++. .++. .+..+. -.++++++|++.++ .++
T Consensus 108 D~~~~q~idL~t~~rDv~g-~VV~~~~~Rcgg~lk~LSlrG~r~v~~s---slrt~~-----~~CpnIehL~l~gc~~iT 178 (483)
T KOG4341|consen 108 DGSCWQHIDLFTFQRDVDG-GVVENMISRCGGFLKELSLRGCRAVGDS---SLRTFA-----SNCPNIEHLALYGCKKIT 178 (483)
T ss_pred ccccceeeehhcchhcCCC-cceehHhhhhccccccccccccccCCcc---hhhHHh-----hhCCchhhhhhhcceecc
Confidence 3367788888876665553 35566666666789999999963 3332 222211 13478999999999 788
Q ss_pred hhHHHHHHHHhhcCCCccEEEecCC-CCCHHHHHHHHHhcCCCCCccEEEcCCCC-CChHHHHHHHHHhhcCCCccEEEe
Q 009168 229 EKGVRAFGALLKSQNNLEELHLMND-GISEEAAQAILELIPSTEKLKVLHFHNNM-TGDEGAVAISEIVKHSPALEDFRC 306 (541)
Q Consensus 229 ~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L 306 (541)
+.....++.. |+.|++|+|..| .++....+.+++ .|++|++|+++.+. |.+.++.++.+ ++..++.+.+
T Consensus 179 d~s~~sla~~---C~~l~~l~L~~c~~iT~~~Lk~la~---gC~kL~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~ 249 (483)
T KOG4341|consen 179 DSSLLSLARY---CRKLRHLNLHSCSSITDVSLKYLAE---GCRKLKYLNLSWCPQISGNGVQALQR---GCKELEKLSL 249 (483)
T ss_pred HHHHHHHHHh---cchhhhhhhcccchhHHHHHHHHHH---hhhhHHHhhhccCchhhcCcchHHhc---cchhhhhhhh
Confidence 8766666555 899999999996 577766665554 47999999999884 66666655554 4555777777
Q ss_pred cCCCCChhHHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHhcccCCCCCEEEcccC-CCChhHHHHHHHHHhhcCC
Q 009168 307 SSTRIGAEGGIALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEVLPAFPDLTEVYLSYL-NLEDEGAEALAGALKECAP 384 (541)
Q Consensus 307 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~ 384 (541)
.+|. ..+...+...-+.+.-+.++++.+|. +++.+. ...-..+..|+.|+.+++ .+++.....+ ..+++
T Consensus 250 kGC~--e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~---~~i~~~c~~lq~l~~s~~t~~~d~~l~aL----g~~~~ 320 (483)
T KOG4341|consen 250 KGCL--ELELEALLKAAAYCLEILKLNLQHCNQLTDEDL---WLIACGCHALQVLCYSSCTDITDEVLWAL----GQHCH 320 (483)
T ss_pred cccc--cccHHHHHHHhccChHhhccchhhhccccchHH---HHHhhhhhHhhhhcccCCCCCchHHHHHH----hcCCC
Confidence 7653 22333455555677788888887765 777663 333345678999999887 4555444444 44579
Q ss_pred CccEEEecCCC-CCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCC-CCChHHHHHHH
Q 009168 385 SLEVLDLAGND-ITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTN-SMKRAGARLLA 462 (541)
Q Consensus 385 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~ 462 (541)
+|+.|-++.|. +++.+...++ .+++.|+.+++.++.....+ .+...-. +++.|+.|.+++| .|++.|...+.
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~---rn~~~Le~l~~e~~~~~~d~--tL~sls~-~C~~lr~lslshce~itD~gi~~l~ 394 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLG---RNCPHLERLDLEECGLITDG--TLASLSR-NCPRLRVLSLSHCELITDEGIRHLS 394 (483)
T ss_pred ceEEEeccccchhhhhhhhhhh---cCChhhhhhcccccceehhh--hHhhhcc-CCchhccCChhhhhhhhhhhhhhhh
Confidence 99999999995 6666554443 34789999999999766555 2333223 8999999999999 58999999888
Q ss_pred HHHhcCCCccEEEecCCCCChhH
Q 009168 463 QVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
..-.....|..+.|++++...+.
T Consensus 395 ~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 395 SSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred hccccccccceeeecCCCCchHH
Confidence 87777888999999999866543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2e-13 Score=132.61 Aligned_cols=239 Identities=20% Similarity=0.220 Sum_probs=126.2
Q ss_pred EcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCC
Q 009168 221 NLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPA 300 (541)
Q Consensus 221 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 300 (541)
.+++-++...|+..++.-=++..+|+++.|.++.+...+.. ...+.|++++.|||+.|.+... ..+...+..+|+
T Consensus 99 si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~ 173 (505)
T KOG3207|consen 99 SISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPS 173 (505)
T ss_pred hhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhH--HHHHHHHHhccc
Confidence 33333444445555554444445566666666665543222 2334456777777777665432 224455556677
Q ss_pred ccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHh
Q 009168 301 LEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALK 380 (541)
Q Consensus 301 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 380 (541)
|+.|+|+.|++..--..... ..+++|+.|.|+.|.|+... +...+..+|+|..|+|.+|.. .+.......
T Consensus 174 Le~LNls~Nrl~~~~~s~~~---~~l~~lK~L~l~~CGls~k~---V~~~~~~fPsl~~L~L~~N~~--~~~~~~~~~-- 243 (505)
T KOG3207|consen 174 LENLNLSSNRLSNFISSNTT---LLLSHLKQLVLNSCGLSWKD---VQWILLTFPSLEVLYLEANEI--ILIKATSTK-- 243 (505)
T ss_pred chhcccccccccCCccccch---hhhhhhheEEeccCCCCHHH---HHHHHHhCCcHHHhhhhcccc--cceecchhh--
Confidence 77777777665321000000 13456777777777776433 444455667777777777731 111111111
Q ss_pred hcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHH---HHHHHhhhcCCCccEEEccCCCCChHH
Q 009168 381 ECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAI---LIGKSLEEGHGQLIEIDLSTNSMKRAG 457 (541)
Q Consensus 381 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~---~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 457 (541)
..+.|+.|+|++|++-+.... ..+...+.|+.|+++.|.|.+.... .+.. .- ..++|+.|+++.|+|.+.-
T Consensus 244 -i~~~L~~LdLs~N~li~~~~~---~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~k-t~-~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 244 -ILQTLQELDLSNNNLIDFDQG---YKVGTLPGLNQLNLSSTGIASIAEPDVESLDK-TH-TFPKLEYLNISENNIRDWR 317 (505)
T ss_pred -hhhHHhhccccCCcccccccc---cccccccchhhhhccccCcchhcCCCccchhh-hc-ccccceeeecccCcccccc
Confidence 135677777777766543311 1233447777777777776642110 0000 11 4567777777777775531
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 458 ARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 458 ~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
-...+...++|+.|.+..|+++.
T Consensus 318 ---sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 318 ---SLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ---ccchhhccchhhhhhcccccccc
Confidence 11223445667777777777654
No 32
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=4e-12 Score=117.74 Aligned_cols=162 Identities=22% Similarity=0.261 Sum_probs=129.5
Q ss_pred CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccC-CCChhHHHHHHH
Q 009168 299 PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYL-NLEDEGAEALAG 377 (541)
Q Consensus 299 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~ 377 (541)
..|++|||++..|+... +--.++.|.+|+.|.|.++.+.+. +...++.+.+|+.|+|+.+ +++..+...+..
T Consensus 185 sRlq~lDLS~s~it~st---l~~iLs~C~kLk~lSlEg~~LdD~----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~ 257 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVST---LHGILSQCSKLKNLSLEGLRLDDP----IVNTIAKNSNLVRLNLSMCSGFTENALQLLLS 257 (419)
T ss_pred hhhHHhhcchhheeHHH---HHHHHHHHHhhhhccccccccCcH----HHHHHhccccceeeccccccccchhHHHHHHH
Confidence 46999999999998664 445678999999999999999987 5777788999999999997 677665555543
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC--CChhHHHHHHHHhhhcCCCccEEEccCC-CCC
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE--LQDEGAILIGKSLEEGHGQLIEIDLSTN-SMK 454 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~ 454 (541)
+|..|..|+|+.|.++......+..-++ ++|+.|+|+|+. +....+..+.. .|++|.+|||+.| .++
T Consensus 258 ----scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~----rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 258 ----SCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVR----RCPNLVHLDLSDSVMLK 327 (419)
T ss_pred ----hhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHH----hCCceeeeccccccccC
Confidence 4799999999999988766554443333 789999999984 66555555554 8999999999998 577
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCC
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFI 481 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i 481 (541)
+. ....+.+.+.|++|.++.|..
T Consensus 328 ~~----~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 328 ND----CFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred ch----HHHHHHhcchheeeehhhhcC
Confidence 75 566677889999999999963
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-12 Score=127.31 Aligned_cols=213 Identities=23% Similarity=0.230 Sum_probs=149.1
Q ss_pred ecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCc
Q 009168 250 LMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHL 329 (541)
Q Consensus 250 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 329 (541)
+++-.+...+...++.--+...+|+...|.++.+...+.. .....|++++.|+|+.|-+..- ..+++....+++|
T Consensus 100 i~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~---~~~k~~~~v~~LdLS~NL~~nw--~~v~~i~eqLp~L 174 (505)
T KOG3207|consen 100 ISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIE---EYSKILPNVRDLDLSRNLFHNW--FPVLKIAEQLPSL 174 (505)
T ss_pred hcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchh---hhhhhCCcceeecchhhhHHhH--HHHHHHHHhcccc
Confidence 3333344444455554445568999999999998875543 4566799999999999988643 3467777899999
Q ss_pred CEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCC-CCHHHHHHHHHHH
Q 009168 330 KKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGND-ITAKAASSLAACI 408 (541)
Q Consensus 330 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 408 (541)
+.|+|+.|.+.......... .++.|+.|.|+.|+++...+..+... +|+|+.|+|.+|. +... ... .
T Consensus 175 e~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~----fPsl~~L~L~~N~~~~~~---~~~--~ 242 (505)
T KOG3207|consen 175 ENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLT----FPSLEVLYLEANEIILIK---ATS--T 242 (505)
T ss_pred hhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHHHh----CCcHHHhhhhccccccee---cch--h
Confidence 99999999975432111111 45789999999999997776666543 6999999999994 3221 111 1
Q ss_pred hhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHH--HHHHhcCCCccEEEecCCCCCh
Q 009168 409 ALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLL--AQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 409 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
...++|+.|||++|.+-+..-.. .+. .++.|..|+++.|.|........ ..-....++|++|+++.|+|.+
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~---~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGY---KVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred hhhhHHhhccccCCccccccccc---ccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 12378999999999877653222 222 68999999999999887532111 0113456899999999999955
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.23 E-value=5.6e-14 Score=119.76 Aligned_cols=154 Identities=23% Similarity=0.356 Sum_probs=83.2
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKA 322 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 322 (541)
.+++.|.|++|+++. .+..++++ .+|+.|++++|+|.+ ++..++.++.|+.|+++-|++.. ++..
T Consensus 33 s~ITrLtLSHNKl~~-vppnia~l----~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPPNIAEL----KNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRG 97 (264)
T ss_pred hhhhhhhcccCceee-cCCcHHHh----hhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Cccc
Confidence 456666677776654 23344444 567777777777665 66666666666777666666542 5555
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
|+.++.|+.|||.+|++.... ++..|..+..|+.|+|++|.+. ..+..+.+ +++|+.|.+..|.+-. .+.
T Consensus 98 fgs~p~levldltynnl~e~~---lpgnff~m~tlralyl~dndfe-~lp~dvg~-----lt~lqil~lrdndll~-lpk 167 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-----LTNLQILSLRDNDLLS-LPK 167 (264)
T ss_pred cCCCchhhhhhcccccccccc---CCcchhHHHHHHHHHhcCCCcc-cCChhhhh-----hcceeEEeeccCchhh-CcH
Confidence 666666666666666665432 3444444455555555555544 22333333 3455555555554432 122
Q ss_pred HHHHHHhhCCCccEEEccCCCCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQ 425 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~ 425 (541)
.+..+ ..|+.|.+.+|.++
T Consensus 168 eig~l----t~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 168 EIGDL----TRLRELHIQGNRLT 186 (264)
T ss_pred HHHHH----HHHHHHhcccceee
Confidence 33333 44555555555444
No 35
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-13 Score=116.96 Aligned_cols=176 Identities=20% Similarity=0.268 Sum_probs=137.4
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHh
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEV 350 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 350 (541)
..++.|-||+|.++. ++..+..+.+|+.|++++|+|.. ++..++.+++|+.|+++-|.+.. ++..
T Consensus 33 s~ITrLtLSHNKl~~-----vppnia~l~nlevln~~nnqie~-----lp~~issl~klr~lnvgmnrl~~-----lprg 97 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-----VPPNIAELKNLEVLNLSNNQIEE-----LPTSISSLPKLRILNVGMNRLNI-----LPRG 97 (264)
T ss_pred hhhhhhhcccCceee-----cCCcHHHhhhhhhhhcccchhhh-----cChhhhhchhhhheecchhhhhc-----Cccc
Confidence 577888999999986 77788888999999999999974 78889999999999999998775 6889
Q ss_pred cccCCCCCEEEcccCCCChhH-HHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEG-AEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGA 429 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~ 429 (541)
|+.+|.|+.|+|.+|++.... +..++. +..|+-|+|++|.+.-. +..+..+ ++|+.|.+..|.+-
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~-----m~tlralyl~dndfe~l-p~dvg~l----t~lqil~lrdndll---- 163 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFY-----MTTLRALYLGDNDFEIL-PPDVGKL----TNLQILSLRDNDLL---- 163 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhH-----HHHHHHHHhcCCCcccC-Chhhhhh----cceeEEeeccCchh----
Confidence 999999999999999987644 333333 36788999999987643 3444444 99999999999876
Q ss_pred HHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcC---CCccEEEecCCCCC
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK---PGLKMLNINGNFIP 482 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~---~~L~~L~L~~N~i~ 482 (541)
.+++.+. .+++|++|++.+|+++- ++.-+.+. .+=..+.+.+|+.-
T Consensus 164 -~lpkeig-~lt~lrelhiqgnrl~v-----lppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 164 -SLPKEIG-DLTRLRELHIQGNRLTV-----LPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred -hCcHHHH-HHHHHHHHhcccceeee-----cChhhhhhhhhhhHHHHhhhhCCCC
Confidence 6788887 89999999999999876 33322221 12244556677643
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.11 E-value=1.5e-11 Score=114.13 Aligned_cols=132 Identities=27% Similarity=0.359 Sum_probs=96.4
Q ss_pred cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHH
Q 009168 325 QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSL 404 (541)
Q Consensus 325 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 404 (541)
..+.|++|||++|.|+. +-....-.|.++.|++++|.|...+. ++. +++|+.|||++|.++...
T Consensus 282 TWq~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~v~n--La~-----L~~L~~LDLS~N~Ls~~~---- 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRTVQN--LAE-----LPQLQLLDLSGNLLAECV---- 345 (490)
T ss_pred hHhhhhhccccccchhh-----hhhhhhhccceeEEeccccceeeehh--hhh-----cccceEeecccchhHhhh----
Confidence 34568889999998876 34555567889999999998875433 333 588999999999876532
Q ss_pred HHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 405 AACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 405 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
.+-.+..++++|.|++|.|.+. .++. .+-+|..||+++|+|.... -...++++|.|+++.|.+|++..
T Consensus 346 -Gwh~KLGNIKtL~La~N~iE~L------SGL~-KLYSLvnLDl~~N~Ie~ld---eV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 346 -GWHLKLGNIKTLKLAQNKIETL------SGLR-KLYSLVNLDLSSNQIEELD---EVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred -hhHhhhcCEeeeehhhhhHhhh------hhhH-hhhhheeccccccchhhHH---HhcccccccHHHHHhhcCCCccc
Confidence 1222347899999999988742 2344 6778899999999887642 33556788999999999998765
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.04 E-value=7e-11 Score=105.15 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=12.4
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEE
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLN 475 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~ 475 (541)
.+++|+.|+|.+|.++.. ..+=...+..+|+|+.||
T Consensus 111 ~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp G-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred cCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 345555555555554432 112222334455555543
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=1.5e-10 Score=102.98 Aligned_cols=128 Identities=23% Similarity=0.247 Sum_probs=32.9
Q ss_pred CCccEEEecCCCCChhHHHHHHHHhh-cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH
Q 009168 299 PALEDFRCSSTRIGAEGGIALAKALG-QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG 377 (541)
Q Consensus 299 ~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 377 (541)
..+++|+|.+|.|.. .+.+. .+.+|+.|+|++|.|+. ...+..++.|++|++++|.|++... .+..
T Consensus 19 ~~~~~L~L~~n~I~~------Ie~L~~~l~~L~~L~Ls~N~I~~------l~~l~~L~~L~~L~L~~N~I~~i~~-~l~~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQIST------IENLGATLDKLEVLDLSNNQITK------LEGLPGLPRLKTLDLSNNRISSISE-GLDK 85 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--------TT----TT--EEE--SS---S-CH-HHHH
T ss_pred ccccccccccccccc------ccchhhhhcCCCEEECCCCCCcc------ccCccChhhhhhcccCCCCCCcccc-chHH
Confidence 345666666666542 12233 34556666666666554 3344555566666666666554211 1111
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEc
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDL 448 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~L 448 (541)
.+++|++|++++|.|..... + ..+..+++|+.|+|.+|.++...- .=...+. .+|+|+.||-
T Consensus 86 ----~lp~L~~L~L~~N~I~~l~~--l-~~L~~l~~L~~L~L~~NPv~~~~~-YR~~vi~-~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 ----NLPNLQELYLSNNKISDLNE--L-EPLSSLPKLRVLSLEGNPVCEKKN-YRLFVIY-KLPSLKVLDG 147 (175)
T ss_dssp ----H-TT--EEE-TTS---SCCC--C-GGGGG-TT--EEE-TT-GGGGSTT-HHHHHHH-H-TT-SEETT
T ss_pred ----hCCcCCEEECcCCcCCChHH--h-HHHHcCCCcceeeccCCcccchhh-HHHHHHH-HcChhheeCC
Confidence 13556666666665543211 1 113334566666666665553311 1112222 4556665553
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=4.6e-10 Score=104.33 Aligned_cols=127 Identities=24% Similarity=0.263 Sum_probs=57.9
Q ss_pred CccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHh
Q 009168 244 NLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKAL 323 (541)
Q Consensus 244 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 323 (541)
.|++|+|++|.|+. |-+.++-.|.++.|++|+|.|.. + ..+..+++|++|||++|.++... ..-
T Consensus 285 ~LtelDLS~N~I~~-----iDESvKL~Pkir~L~lS~N~i~~-----v-~nLa~L~~L~~LDLS~N~Ls~~~-----Gwh 348 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-----IDESVKLAPKLRRLILSQNRIRT-----V-QNLAELPQLQLLDLSGNLLAECV-----GWH 348 (490)
T ss_pred hhhhccccccchhh-----hhhhhhhccceeEEeccccceee-----e-hhhhhcccceEeecccchhHhhh-----hhH
Confidence 35555555554432 22222223555555555555543 1 22444455555555555544211 111
Q ss_pred hcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhH-HHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 324 GQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEG-AEALAGALKECAPSLEVLDLAGNDIT 397 (541)
Q Consensus 324 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~ 397 (541)
.++.++++|.|+.|.+.+ ...+..+-+|..||+++|+|.... +..++. +|.|+.|.|.+|.+.
T Consensus 349 ~KLGNIKtL~La~N~iE~------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-----LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-----LPCLETLRLTGNPLA 412 (490)
T ss_pred hhhcCEeeeehhhhhHhh------hhhhHhhhhheeccccccchhhHHHhccccc-----ccHHHHHhhcCCCcc
Confidence 234455555555555443 233444445555555555554321 223322 355556666666554
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.73 E-value=5.8e-09 Score=107.49 Aligned_cols=194 Identities=26% Similarity=0.334 Sum_probs=88.7
Q ss_pred EEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCC-CccEEEcCCCCCChHHHHHHHHHhhc
Q 009168 219 YLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTE-KLKVLHFHNNMTGDEGAVAISEIVKH 297 (541)
Q Consensus 219 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~ 297 (541)
.|+++.|.+...... +...+.++.|++.+|.++... ....... +|+.|++++|.+.. ++..+..
T Consensus 97 ~l~~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~i~~i~-----~~~~~~~~nL~~L~l~~N~i~~-----l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNISE-----LLELTNLTSLDLDNNNITDIP-----PLIGLLKSNLKELDLSDNKIES-----LPSPLRN 161 (394)
T ss_pred eeeccccccccCchh-----hhcccceeEEecCCcccccCc-----cccccchhhcccccccccchhh-----hhhhhhc
Confidence 566666665221111 222255666666666655421 1111122 56666666666654 4344555
Q ss_pred CCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH
Q 009168 298 SPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG 377 (541)
Q Consensus 298 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 377 (541)
++.|+.|++++|++.. ++......+.|+.|++++|.+.. ++..+.....|++|.+++|.+.. .+..+..
T Consensus 162 l~~L~~L~l~~N~l~~-----l~~~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~ 230 (394)
T COG4886 162 LPNLKNLDLSFNDLSD-----LPKLLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-LLSSLSN 230 (394)
T ss_pred cccccccccCCchhhh-----hhhhhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-cchhhhh
Confidence 5666666666666553 23222345555666666665554 23222233345555555553211 1111111
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
+.++..|.+.+|.+... ...+...+.|+.|++++|.+++... +. ...+|+.|++++|.+..
T Consensus 231 -----~~~l~~l~l~~n~~~~~-----~~~~~~l~~l~~L~~s~n~i~~i~~------~~-~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 231 -----LKNLSGLELSNNKLEDL-----PESIGNLSNLETLDLSNNQISSISS------LG-SLTNLRELDLSGNSLSN 291 (394)
T ss_pred -----cccccccccCCceeeec-----cchhccccccceecccccccccccc------cc-ccCccCEEeccCccccc
Confidence 24444455555544331 1112223445555555555553211 22 44555555555554443
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.72 E-value=4.9e-09 Score=108.27 Aligned_cols=167 Identities=21% Similarity=0.185 Sum_probs=106.4
Q ss_pred CccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHH
Q 009168 300 ALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGAL 379 (541)
Q Consensus 300 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 379 (541)
.|...+++.|++.. +-.++.-++.|+.|+|++|+++. ...+..++.|++|||++|.+.... .+..
T Consensus 165 ~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~~vp--~l~~-- 229 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLRHVP--QLSM-- 229 (1096)
T ss_pred hHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhh------hHHHHhcccccccccccchhcccc--ccch--
Confidence 46666777777652 44566667788888888888886 446777888888999888876421 1211
Q ss_pred hhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhH-HHHHHHHhhhcCCCccEEEccCCCCCh--H
Q 009168 380 KECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEG-AILIGKSLEEGHGQLIEIDLSTNSMKR--A 456 (541)
Q Consensus 380 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~~~l~~~~~~L~~L~Ls~n~i~~--~ 456 (541)
. -+.|..|.+++|.++... . +.+.++|+.|||++|-|.+-. +..+. .+..|+.|+|.||.+-- .
T Consensus 230 -~-gc~L~~L~lrnN~l~tL~--g----ie~LksL~~LDlsyNll~~hseL~pLw-----sLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 230 -V-GCKLQLLNLRNNALTTLR--G----IENLKSLYGLDLSYNLLSEHSELEPLW-----SLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred -h-hhhheeeeecccHHHhhh--h----HHhhhhhhccchhHhhhhcchhhhHHH-----HHHHHHHHhhcCCccccCHH
Confidence 1 145888999988877532 2 333488899999998876432 22222 45678888999987643 2
Q ss_pred HHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHh
Q 009168 457 GARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILK 494 (541)
Q Consensus 457 ~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~ 494 (541)
--.+.++.+..+..=..+-|+|-.|+......-.....
T Consensus 297 hRaataqYl~~~~a~~~f~LDgk~l~~~efwk~~s~~~ 334 (1096)
T KOG1859|consen 297 HRAATAQYLHKNSAPVKFKLDGKALGGREFWKRQSGVS 334 (1096)
T ss_pred HHHHHHhHhccccCCcceEecceeccchhhhhhhhhee
Confidence 22334444544444456677777776655444444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=1.6e-09 Score=112.08 Aligned_cols=61 Identities=25% Similarity=0.242 Sum_probs=26.6
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
..+++|++|++++|.|+.. ..+..++.|+.|++++|.+.. ...+..++.|+.+++++|.+.
T Consensus 115 ~~~~~L~~L~ls~N~I~~i------~~l~~l~~L~~L~l~~N~i~~------~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKL------EGLSTLTLLKELNLSGNLISD------ISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hhhhcchheeccccccccc------cchhhccchhhheeccCcchh------ccCCccchhhhcccCCcchhh
Confidence 3344444444444444422 112333334555555555443 233333444555555555444
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=4.9e-10 Score=115.86 Aligned_cols=225 Identities=24% Similarity=0.210 Sum_probs=117.3
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
.+|+.|++.+|.|... ...+..+++|++|+|++|.|+.. ..+ ..++.|+.|++++|.|.. ...
T Consensus 95 ~~l~~l~l~~n~i~~i-----~~~l~~~~~L~~L~ls~N~I~~i--~~l----~~l~~L~~L~l~~N~i~~------~~~ 157 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKI-----ENLLSSLVNLQVLDLSFNKITKL--EGL----STLTLLKELNLSGNLISD------ISG 157 (414)
T ss_pred cceeeeeccccchhhc-----ccchhhhhcchheeccccccccc--cch----hhccchhhheeccCcchh------ccC
Confidence 3666677777666532 11144456677777777766653 122 223456677777776664 223
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+..++.|+.+++++|++...... . +..+..++.+++.+|.+... ..+.....+..+++..|.++......
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~---~-~~~~~~l~~l~l~~n~i~~i------~~~~~~~~l~~~~l~~n~i~~~~~l~ 227 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIEND---E-LSELISLEELDLGGNSIREI------EGLDLLKKLVLLSLLDNKISKLEGLN 227 (414)
T ss_pred CccchhhhcccCCcchhhhhhhh---h-hhhccchHHHhccCCchhcc------cchHHHHHHHHhhcccccceeccCcc
Confidence 34456667777777766532110 0 35566667777777766542 22222233333455555554321111
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
... +..|+.+++++|.+.... ..+..+..+..|++..|.+... ..+. ..+.+..+....|.+.
T Consensus 228 ~~~-----~~~L~~l~l~~n~i~~~~-----~~~~~~~~l~~l~~~~n~~~~~------~~~~-~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 228 ELV-----MLHLRELYLSGNRISRSP-----EGLENLKNLPVLDLSSNRISNL------EGLE-RLPKLSELWLNDNKLA 290 (414)
T ss_pred cch-----hHHHHHHhcccCcccccc-----ccccccccccccchhhcccccc------cccc-ccchHHHhccCcchhc
Confidence 000 012667777777665421 2233346677777777776632 1122 4556666666666665
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
......-.......+.+..+.+.+|++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 291 LSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred chhhhhccccccccccccccccccCcccc
Confidence 43221111124455667777777776654
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.69 E-value=4.2e-10 Score=113.10 Aligned_cols=197 Identities=19% Similarity=0.205 Sum_probs=147.4
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKA 322 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 322 (541)
.--...+|+.|++... +..++.+ -.|+.+.|+.|.+.. ++..+.++..|+.|+|+.|+++. ++..
T Consensus 75 tdt~~aDlsrNR~~el-p~~~~~f----~~Le~liLy~n~~r~-----ip~~i~~L~~lt~l~ls~NqlS~-----lp~~ 139 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSEL-PEEACAF----VSLESLILYHNCIRT-----IPEAICNLEALTFLDLSSNQLSH-----LPDG 139 (722)
T ss_pred cchhhhhccccccccC-chHHHHH----HHHHHHHHHhcccee-----cchhhhhhhHHHHhhhccchhhc-----CChh
Confidence 3456778888887653 3344444 367778888888776 77888888899999999999874 5555
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..+ -|+.|-+++|+++. ++..+...+.|..|+.++|.+.. .+..++. +.+|+.|.+..|.+.... .
T Consensus 140 lC~l-pLkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~s-lpsql~~-----l~slr~l~vrRn~l~~lp-~ 206 (722)
T KOG0532|consen 140 LCDL-PLKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQS-LPSQLGY-----LTSLRDLNVRRNHLEDLP-E 206 (722)
T ss_pred hhcC-cceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhh-chHHhhh-----HHHHHHHHHhhhhhhhCC-H
Confidence 5555 58999999999887 57777778899999999998875 4555554 478899999999887543 3
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
.++. =.|..||+|+|++. .|+-.+. .++.|++|-|.+|.+....+.....+ ...-+|+|+..-|+
T Consensus 207 El~~-----LpLi~lDfScNkis-----~iPv~fr-~m~~Lq~l~LenNPLqSPPAqIC~kG--kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 207 ELCS-----LPLIRLDFSCNKIS-----YLPVDFR-KMRHLQVLQLENNPLQSPPAQICEKG--KVHIFKYLSTQACQ 271 (722)
T ss_pred HHhC-----CceeeeecccCcee-----ecchhhh-hhhhheeeeeccCCCCCChHHHHhcc--ceeeeeeecchhcc
Confidence 4443 35999999999998 7777777 89999999999999988744433322 22347889988884
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.3e-08 Score=93.11 Aligned_cols=237 Identities=16% Similarity=0.159 Sum_probs=147.4
Q ss_pred eeEEEcCCCCCChhHH-HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 217 LRYLNLSHNALGEKGV-RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 217 L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+.-|-+.++.|...+. ..|+ ..++.+++|+|.+|.|++ +..++.++.++|.|+.|+|++|.+... ...+|
T Consensus 47 ~ellvln~~~id~~gd~~~~~---~~~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~-I~~lp--- 117 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFG---SSVTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD-IKSLP--- 117 (418)
T ss_pred hhhheecCCCCCcchhHHHHH---HHhhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc-cccCc---
Confidence 4466677777766554 2333 336779999999999985 467778888889999999999987752 11111
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcc-cCCCCCEEEcccCCCChhHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLP-AFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
....+|+.|-|.++.+.... .-..+...+.++.|+++.|.+...... ..... -.+.+++|.+..|... ....
T Consensus 118 ~p~~nl~~lVLNgT~L~w~~---~~s~l~~lP~vtelHmS~N~~rq~n~D--d~c~e~~s~~v~tlh~~~c~~~--~w~~ 190 (418)
T KOG2982|consen 118 LPLKNLRVLVLNGTGLSWTQ---STSSLDDLPKVTELHMSDNSLRQLNLD--DNCIEDWSTEVLTLHQLPCLEQ--LWLN 190 (418)
T ss_pred ccccceEEEEEcCCCCChhh---hhhhhhcchhhhhhhhccchhhhhccc--cccccccchhhhhhhcCCcHHH--HHHH
Confidence 23467899999998887553 344567788888888888853211000 01111 1235666666666432 2222
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
.++.. +..|++..+.+..|.+....... .....+.+..|+|+.|.|.+-.. .+++. +.++|..|.+++|.+.
T Consensus 191 ~~~l~-r~Fpnv~sv~v~e~PlK~~s~ek---~se~~p~~~~LnL~~~~idswas---vD~Ln-~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 191 KNKLS-RIFPNVNSVFVCEGPLKTESSEK---GSEPFPSLSCLNLGANNIDSWAS---VDALN-GFPQLVDLRVSENPLS 262 (418)
T ss_pred HHhHH-hhcccchheeeecCcccchhhcc---cCCCCCcchhhhhcccccccHHH---HHHHc-CCchhheeeccCCccc
Confidence 22221 22588888888888776543322 12223667788888888875321 24555 7889999999999887
Q ss_pred hHHHHHHHH------HHhcCCCccEEEecCCCCCh
Q 009168 455 RAGARLLAQ------VAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 455 ~~~~~~l~~------~l~~~~~L~~L~L~~N~i~~ 483 (541)
+. +.. .++.+++++.|+=+ .|+.
T Consensus 263 d~----l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 263 DP----LRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred cc----ccCCcceEEEEeeccceEEecCc--ccch
Confidence 64 321 12445666666544 6654
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.9e-08 Score=103.73 Aligned_cols=175 Identities=26% Similarity=0.375 Sum_probs=101.0
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCC-CccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQN-NLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE 293 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 293 (541)
..++.|++.+|.+++. ........ +|+.|++++|.+.... ..+..+++|+.|++++|++.+ ++.
T Consensus 116 ~~l~~L~l~~n~i~~i-----~~~~~~~~~nL~~L~l~~N~i~~l~-----~~~~~l~~L~~L~l~~N~l~~-----l~~ 180 (394)
T COG4886 116 TNLTSLDLDNNNITDI-----PPLIGLLKSNLKELDLSDNKIESLP-----SPLRNLPNLKNLDLSFNDLSD-----LPK 180 (394)
T ss_pred cceeEEecCCcccccC-----ccccccchhhcccccccccchhhhh-----hhhhccccccccccCCchhhh-----hhh
Confidence 3677777777776643 22222232 6777777777665421 223445677777777777765 444
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
.....+.|+.|++++|++.. ++..+.....|++|.+++|.+.. ....+..+.++..|.+..|.+... +.
T Consensus 181 ~~~~~~~L~~L~ls~N~i~~-----l~~~~~~~~~L~~l~~~~N~~~~-----~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 181 LLSNLSNLNNLDLSGNKISD-----LPPEIELLSALEELDLSNNSIIE-----LLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhhhhhheeccCCcccc-----CchhhhhhhhhhhhhhcCCccee-----cchhhhhcccccccccCCceeeec-cc
Confidence 44456677777777777764 33333444457777777774222 244455566666666666666531 12
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCCh
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQD 426 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 426 (541)
.+.. ++.++.|++++|.++.... +....+|+.|++++|.+..
T Consensus 250 ~~~~-----l~~l~~L~~s~n~i~~i~~------~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 250 SIGN-----LSNLETLDLSNNQISSISS------LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred hhcc-----ccccceecccccccccccc------ccccCccCEEeccCccccc
Confidence 2221 3567777777777665432 3333677777777776653
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=1.3e-09 Score=112.49 Aligned_cols=140 Identities=24% Similarity=0.227 Sum_probs=99.5
Q ss_pred CcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHH
Q 009168 328 HLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAAC 407 (541)
Q Consensus 328 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 407 (541)
.|...+.++|.+.. +-..+.-++.|+.|+|++|++++.. .+-. |+.|++|||++|.++...-.....
T Consensus 165 ~L~~a~fsyN~L~~-----mD~SLqll~ale~LnLshNk~~~v~--~Lr~-----l~~LkhLDlsyN~L~~vp~l~~~g- 231 (1096)
T KOG1859|consen 165 KLATASFSYNRLVL-----MDESLQLLPALESLNLSHNKFTKVD--NLRR-----LPKLKHLDLSYNCLRHVPQLSMVG- 231 (1096)
T ss_pred hHhhhhcchhhHHh-----HHHHHHHHHHhhhhccchhhhhhhH--HHHh-----cccccccccccchhccccccchhh-
Confidence 46667778887764 4566777889999999999998633 3322 699999999999887543222222
Q ss_pred HhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh--hH
Q 009168 408 IALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD--EG 485 (541)
Q Consensus 408 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~--~g 485 (541)
..|..|+|++|.++. ..++. ++.+|+.||+++|-|.+..-. ..+..+..|+.|+|.||++-- .-
T Consensus 232 ----c~L~~L~lrnN~l~t------L~gie-~LksL~~LDlsyNll~~hseL---~pLwsLs~L~~L~LeGNPl~c~p~h 297 (1096)
T KOG1859|consen 232 ----CKLQLLNLRNNALTT------LRGIE-NLKSLYGLDLSYNLLSEHSEL---EPLWSLSSLIVLWLEGNPLCCAPWH 297 (1096)
T ss_pred ----hhheeeeecccHHHh------hhhHH-hhhhhhccchhHhhhhcchhh---hHHHHHHHHHHHhhcCCccccCHHH
Confidence 349999999999884 23445 789999999999988764321 123445679999999999854 33
Q ss_pred HHHHHHHHh
Q 009168 486 IDEVKEILK 494 (541)
Q Consensus 486 ~~~l~~~l~ 494 (541)
..+..+.+.
T Consensus 298 RaataqYl~ 306 (1096)
T KOG1859|consen 298 RAATAQYLH 306 (1096)
T ss_pred HHHHHhHhc
Confidence 444455554
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.61 E-value=3.2e-07 Score=99.27 Aligned_cols=212 Identities=15% Similarity=0.176 Sum_probs=130.8
Q ss_pred cceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch------HHHHHHHHHHHhhhcCCCeeEEEcCCCCC
Q 009168 154 SYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE------EEALEVINMFSSALEGSQLRYLNLSHNAL 227 (541)
Q Consensus 154 ~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~------~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l 227 (541)
.++++++.+..+.....+.+. . ..|++|.|.+....... ......+....|.-...+|++||+++...
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~----~--~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~ 134 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLR----K--QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSEL 134 (699)
T ss_pred eeEEeeccceecchhHHHHHh----h--ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccch
Confidence 556666666555543332222 2 23566665552111111 01112233233333346899999998844
Q ss_pred ChhH-HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEe
Q 009168 228 GEKG-VRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRC 306 (541)
Q Consensus 228 ~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L 306 (541)
-..+ +..++.. +|+|++|.+++-.+... .|..+..+.|+|..||+|+++++. + .+++++++|+.|.+
T Consensus 135 ~s~~W~~kig~~---LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~TnI~n-----l-~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 135 FSNGWPKKIGTM---LPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISGTNISN-----L-SGISRLKNLQVLSM 202 (699)
T ss_pred hhccHHHHHhhh---CcccceEEecCceecch---hHHHHhhccCccceeecCCCCccC-----c-HHHhccccHHHHhc
Confidence 3332 3444444 58999999998877654 355555667999999999999887 3 67788899999988
Q ss_pred cCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchH--HHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCC
Q 009168 307 SSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEA--GVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAP 384 (541)
Q Consensus 307 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 384 (541)
.+-.+.... -...+..+++|+.||+|........ .......-..+|+||.||.|++.+.......+.+. .|
T Consensus 203 rnLe~e~~~---~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s----H~ 275 (699)
T KOG3665|consen 203 RNLEFESYQ---DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS----HP 275 (699)
T ss_pred cCCCCCchh---hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh----Cc
Confidence 887776421 1223567899999999987654432 22333344457899999999888887766665542 35
Q ss_pred CccEEE
Q 009168 385 SLEVLD 390 (541)
Q Consensus 385 ~L~~L~ 390 (541)
+|+.+.
T Consensus 276 ~L~~i~ 281 (699)
T KOG3665|consen 276 NLQQIA 281 (699)
T ss_pred cHhhhh
Confidence 554443
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.60 E-value=3.4e-07 Score=96.85 Aligned_cols=136 Identities=27% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCeeEEEcCCC-CCChhHHHHHHHHhhcCCCccEEEecCC-CCCHHHHHHHHHhcCCCCCccEEEcCCCC-CChHHHHHH
Q 009168 215 SQLRYLNLSHN-ALGEKGVRAFGALLKSQNNLEELHLMND-GISEEAAQAILELIPSTEKLKVLHFHNNM-TGDEGAVAI 291 (541)
Q Consensus 215 ~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l 291 (541)
+.|+.|.+.++ .+++.+ +......+++|++|+++++ ................+++|+.|+++.+. +++.+...+
T Consensus 188 ~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred chhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 46666666666 455443 2333444666777776652 21111111122233445666666666665 666655544
Q ss_pred HHHhhcCCCccEEEecCCC-CChhHHHHHHHHhhcCCCcCEEEccCCCC-CchHHHHHHHhcccCCCCCEEEc
Q 009168 292 SEIVKHSPALEDFRCSSTR-IGAEGGIALAKALGQCTHLKKLDLRDNMF-GVEAGVALSEVLPAFPDLTEVYL 362 (541)
Q Consensus 292 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~L 362 (541)
+.. |++|+.|.+.+|. +++.|+..+ ...++.|++|+|++|.. ++.+. ......+++|+.|.+
T Consensus 265 ~~~---c~~L~~L~l~~c~~lt~~gl~~i---~~~~~~L~~L~l~~c~~~~d~~l---~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 265 ASR---CPNLETLSLSNCSNLTDEGLVSI---AERCPSLRELDLSGCHGLTDSGL---EALLKNCPNLRELKL 328 (482)
T ss_pred Hhh---CCCcceEccCCCCccchhHHHHH---HHhcCcccEEeeecCccchHHHH---HHHHHhCcchhhhhh
Confidence 433 5666666666665 566654433 34555666666666653 23332 222333555555443
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.54 E-value=2.7e-07 Score=99.78 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=10.2
Q ss_pred CccEEEcCCCcCCCch
Q 009168 183 QLTEVDLSDFIAGRPE 198 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~ 198 (541)
+++.+++.+.......
T Consensus 61 ~ltki~l~~~~~~~~~ 76 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQT 76 (699)
T ss_pred eeEEeeccceecchhH
Confidence 6777777766555543
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.49 E-value=8.5e-07 Score=93.86 Aligned_cols=230 Identities=25% Similarity=0.284 Sum_probs=148.2
Q ss_pred CCccEEEecCC--CCCHHHHHHHHHhcCCCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCccEEEecCC--CCChhHHH
Q 009168 243 NNLEELHLMND--GISEEAAQAILELIPSTEKLKVLHFHNN-MTGDEGAVAISEIVKHSPALEDFRCSST--RIGAEGGI 317 (541)
Q Consensus 243 ~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~i~~~~~~ 317 (541)
..++.+.+..+ .+.......+ ...++.|+.|.+..+ .+.+.+ +......++.|+.|+++++ .+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 234 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRL---LSSCPLLKRLSLSGCSKITDDS---LDALALKCPNLEELDLSGCCLLITLSPLL 234 (482)
T ss_pred HHHheeeeecccccccHHHHHHH---HhhCchhhHhhhcccccCChhh---HHHHHhhCchhheecccCcccccccchhH
Confidence 34444444433 4444333333 334689999999877 455544 4455667899999999873 23333221
Q ss_pred HHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHhcccCCCCCEEEcccCC-CChhHHHHHHHHHhhcCCCccEEEecCCC
Q 009168 318 ALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEVLPAFPDLTEVYLSYLN-LEDEGAEALAGALKECAPSLEVLDLAGND 395 (541)
Q Consensus 318 ~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 395 (541)
.......+++|+.|+++++. +++.+...+... +++|+.|.+.++. +++.+...++.. ++.|+.|++++|.
T Consensus 235 -~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~---c~~L~~L~l~~c~~lt~~gl~~i~~~----~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 235 -LLLLLSICRKLKSLDLSGCGLVTDIGLSALASR---CPNLETLSLSNCSNLTDEGLVSIAER----CPSLRELDLSGCH 306 (482)
T ss_pred -hhhhhhhcCCcCccchhhhhccCchhHHHHHhh---CCCcceEccCCCCccchhHHHHHHHh----cCcccEEeeecCc
Confidence 22345567899999999988 888775555543 8899999988887 888888888764 6889999999886
Q ss_pred CC-HHHHHHHHHHHhhCCCccEEEccCCC----CChhHHH--------HHHHHhhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 396 IT-AKAASSLAACIALKQFLTKLNLAENE----LQDEGAI--------LIGKSLEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 396 l~-~~~~~~l~~~l~~~~~L~~L~Ls~n~----l~~~g~~--------~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
.. +.+... ....+++|+.|.+.... +++.++. .+.......++.|+.+.+.++.+++.|...+
T Consensus 307 ~~~d~~l~~---~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~- 382 (482)
T KOG1947|consen 307 GLTDSGLEA---LLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS- 382 (482)
T ss_pred cchHHHHHH---HHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-
Confidence 54 333333 34446777776654433 5544432 2222233268889999999888777764333
Q ss_pred HHHhcCCCc--------------cEEEecCCC-CChhHHHHHHHH
Q 009168 463 QVAVNKPGL--------------KMLNINGNF-IPDEGIDEVKEI 492 (541)
Q Consensus 463 ~~l~~~~~L--------------~~L~L~~N~-i~~~g~~~l~~~ 492 (541)
+..|+.| +.|+++.+. .++.++......
T Consensus 383 --l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~ 425 (482)
T KOG1947|consen 383 --LRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADS 425 (482)
T ss_pred --hcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhh
Confidence 3455544 777887775 677777777666
No 52
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=4.6e-09 Score=105.78 Aligned_cols=196 Identities=23% Similarity=0.261 Sum_probs=146.5
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
.-...||+.|++...... ++.+ ..|+.+.|..|.+... +..++. ...|+.|||+.|++.. ++..+
T Consensus 76 dt~~aDlsrNR~~elp~~-~~~f----~~Le~liLy~n~~r~i-p~~i~~----L~~lt~l~ls~NqlS~-----lp~~l 140 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEE-ACAF----VSLESLILYHNCIRTI-PEAICN----LEALTFLDLSSNQLSH-----LPDGL 140 (722)
T ss_pred chhhhhccccccccCchH-HHHH----HHHHHHHHHhccceec-chhhhh----hhHHHHhhhccchhhc-----CChhh
Confidence 456789999988764332 2233 5678888888876542 233433 4789999999999885 67776
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEAL 375 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 375 (541)
..++ |+.|-+++|+++. ++..++...+|..||.+.|.+.. ++.-+..+.+|+.|.+..|++.. .+..+
T Consensus 141 C~lp-Lkvli~sNNkl~~-----lp~~ig~~~tl~~ld~s~nei~s-----lpsql~~l~slr~l~vrRn~l~~-lp~El 208 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLTS-----LPEEIGLLPTLAHLDVSKNEIQS-----LPSQLGYLTSLRDLNVRRNHLED-LPEEL 208 (722)
T ss_pred hcCc-ceeEEEecCcccc-----CCcccccchhHHHhhhhhhhhhh-----chHHhhhHHHHHHHHHhhhhhhh-CCHHH
Confidence 6655 9999999999984 77778888999999999999876 67788889999999999999875 55555
Q ss_pred HHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCC
Q 009168 376 AGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNS 452 (541)
Q Consensus 376 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 452 (541)
+. -.|..||++.|+|... +.. +.+++.|++|-|.+|.+..--+....++ ...-.++|+..-|+
T Consensus 209 ~~------LpLi~lDfScNkis~i-Pv~----fr~m~~Lq~l~LenNPLqSPPAqIC~kG---kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 209 CS------LPLIRLDFSCNKISYL-PVD----FRKMRHLQVLQLENNPLQSPPAQICEKG---KVHIFKYLSTQACQ 271 (722)
T ss_pred hC------CceeeeecccCceeec-chh----hhhhhhheeeeeccCCCCCChHHHHhcc---ceeeeeeecchhcc
Confidence 52 5799999999999853 333 4445999999999999986544433322 23456788887774
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.5e-07 Score=86.36 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=133.4
Q ss_pred CccEEEcCCCcCCCchH-HHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 183 QLTEVDLSDFIAGRPEE-EALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~~-~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
.++.|.+-++.|...+. ..+... .+.++.|||.+|.|++ +..++..+.+++.|+.|+|++|.++..
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~--------~~~v~elDL~~N~iSd--WseI~~ile~lP~l~~LNls~N~L~s~--- 112 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSS--------VTDVKELDLTGNLISD--WSEIGAILEQLPALTTLNLSCNSLSSD--- 112 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHH--------hhhhhhhhcccchhcc--HHHHHHHHhcCccceEeeccCCcCCCc---
Confidence 35566666666665543 111111 1578899999999875 667778888889999999999988763
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhh-cCCCcCEEEccCCCCC
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALG-QCTHLKKLDLRDNMFG 340 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~ 340 (541)
+...-....+|++|-|.+..+.... ....+..+|.+++|.++.|.+...-... .... -.+.+++|++..|.+.
T Consensus 113 -I~~lp~p~~nl~~lVLNgT~L~w~~---~~s~l~~lP~vtelHmS~N~~rq~n~Dd--~c~e~~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 113 -IKSLPLPLKNLRVLVLNGTGLSWTQ---STSSLDDLPKVTELHMSDNSLRQLNLDD--NCIEDWSTEVLTLHQLPCLEQ 186 (418)
T ss_pred -cccCcccccceEEEEEcCCCCChhh---hhhhhhcchhhhhhhhccchhhhhcccc--ccccccchhhhhhhcCCcHHH
Confidence 2222123358889989888777543 3345567788888888888432110000 0011 1234555555555432
Q ss_pred chHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEcc
Q 009168 341 VEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLA 420 (541)
Q Consensus 341 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 420 (541)
-.......-..+|++..+.+..|.+.+.....-. ...|.+-.|+|+.|+|..-.. ...+...+.|.-|.++
T Consensus 187 --~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s----e~~p~~~~LnL~~~~idswas---vD~Ln~f~~l~dlRv~ 257 (418)
T KOG2982|consen 187 --LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS----EPFPSLSCLNLGANNIDSWAS---VDALNGFPQLVDLRVS 257 (418)
T ss_pred --HHHHHHhHHhhcccchheeeecCcccchhhcccC----CCCCcchhhhhcccccccHHH---HHHHcCCchhheeecc
Confidence 2222333334468888888888877654332221 235778888999988876432 2234555889999999
Q ss_pred CCCCCh
Q 009168 421 ENELQD 426 (541)
Q Consensus 421 ~n~l~~ 426 (541)
+|.+.+
T Consensus 258 ~~Pl~d 263 (418)
T KOG2982|consen 258 ENPLSD 263 (418)
T ss_pred CCcccc
Confidence 998875
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=1.4e-06 Score=94.41 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=61.0
Q ss_pred cCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHH
Q 009168 329 LKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACI 408 (541)
Q Consensus 329 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 408 (541)
+..|+|++|.+... ++..+..+++|+.|+|++|.+.+..+..+.. +++|+.|+|++|.+++..+..+..+
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~-----l~~L~~LdLs~N~lsg~iP~~l~~L- 489 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGNIPPSLGS-----ITSLEVLDLSYNSFNGSIPESLGQL- 489 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCcCChHHhC-----CCCCCEEECCCCCCCCCCchHHhcC-
Confidence 55666666666543 3445556666666777666666555544433 4666667777666666555544433
Q ss_pred hhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCC
Q 009168 409 ALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNS 452 (541)
Q Consensus 409 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 452 (541)
++|+.|+|++|.++..- +..+.....++..+++.+|.
T Consensus 490 ---~~L~~L~Ls~N~l~g~i----P~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 490 ---TSLRILNLNGNSLSGRV----PAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred ---CCCCEEECcCCcccccC----ChHHhhccccCceEEecCCc
Confidence 66777777666665432 22222122345566666664
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=1.7e-06 Score=93.85 Aligned_cols=107 Identities=19% Similarity=0.343 Sum_probs=76.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHh
Q 009168 301 LEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALK 380 (541)
Q Consensus 301 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 380 (541)
++.|+|++|.+... ++..+..+++|+.|+|++|.+.+. ++..+..+++|+.|+|++|.+++..+..+..
T Consensus 420 v~~L~L~~n~L~g~----ip~~i~~L~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~--- 488 (623)
T PLN03150 420 IDGLGLDNQGLRGF----IPNDISKLRHLQSINLSGNSIRGN----IPPSLGSITSLEVLDLSYNSFNGSIPESLGQ--- 488 (623)
T ss_pred EEEEECCCCCcccc----CCHHHhCCCCCCEEECCCCcccCc----CChHHhCCCCCCEEECCCCCCCCCCchHHhc---
Confidence 66777777777543 556677778888888888877653 4556777788888888888887766666654
Q ss_pred hcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC
Q 009168 381 ECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE 423 (541)
Q Consensus 381 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 423 (541)
+++|+.|+|++|.+++..+..+... ..++..+++.+|.
T Consensus 489 --L~~L~~L~Ls~N~l~g~iP~~l~~~---~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 --LTSLRILNLNGNSLSGRVPAALGGR---LLHRASFNFTDNA 526 (623)
T ss_pred --CCCCCEEECcCCcccccCChHHhhc---cccCceEEecCCc
Confidence 5788888888888877776665432 1356677787775
No 56
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.15 E-value=2.1e-07 Score=67.95 Aligned_cols=60 Identities=28% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCccEEEccCCCCChhHHHHHHH-HhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCC
Q 009168 412 QFLTKLNLAENELQDEGAILIGK-SLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFI 481 (541)
Q Consensus 412 ~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i 481 (541)
++|++|+|++|.|+. ++. .+. ++++|++|++++|.|+.. -+.++..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~-----i~~~~f~-~l~~L~~L~l~~N~l~~i----~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-----IPPDSFS-NLPNLETLDLSNNNLTSI----PPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-----ECTTTTT-TGTTESEEEETSSSESEE----ETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-----cCHHHHc-CCCCCCEeEccCCccCcc----CHHHHcCCCCCCEEeCcCCcC
Confidence 356666666666663 222 222 566777777777766654 334556667777777777654
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.04 E-value=1.7e-06 Score=96.22 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=95.5
Q ss_pred CcceEEEeeCCC--CCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChh
Q 009168 153 NSYTRICFSNKS--FGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEK 230 (541)
Q Consensus 153 ~~l~~L~Ls~~~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~ 230 (541)
+.++.|-+.+|. +......++..+ +.|+.|||++|.-...-+..+..+- +|++|+|++..+.
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m-----~~LrVLDLs~~~~l~~LP~~I~~Li---------~LryL~L~~t~I~-- 608 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSL-----PLLRVLDLSGNSSLSKLPSSIGELV---------HLRYLDLSDTGIS-- 608 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhC-----cceEEEECCCCCccCcCChHHhhhh---------hhhcccccCCCcc--
Confidence 467777777775 333233333333 6888888887644333333333332 7888888888877
Q ss_pred HHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCC
Q 009168 231 GVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTR 310 (541)
Q Consensus 231 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 310 (541)
.++..++.++.|.+|++..+...... ...+..+.+|++|.+........ . ....-+..+.+|+.|......
T Consensus 609 ---~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~Lr~L~l~~s~~~~~-~-~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 609 ---HLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQSLRVLRLPRSALSND-K-LLLKELENLEHLENLSITISS 679 (889)
T ss_pred ---ccchHHHHHHhhheeccccccccccc----cchhhhcccccEEEeeccccccc-h-hhHHhhhcccchhhheeecch
Confidence 35555666688888888877533222 12222247888888765542111 1 122233445555555554333
Q ss_pred CChhHHHHHHHHhhcCCCcC----EEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCCh
Q 009168 311 IGAEGGIALAKALGQCTHLK----KLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLED 369 (541)
Q Consensus 311 i~~~~~~~l~~~l~~~~~L~----~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 369 (541)
. . +..-+...+.|. .+.+..+.... ....+..+.+|+.|.+.++.+.+
T Consensus 680 ~--~----~~e~l~~~~~L~~~~~~l~~~~~~~~~-----~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--L----LLEDLLGMTRLRSLLQSLSIEGCSKRT-----LISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--H----hHhhhhhhHHHHHHhHhhhhcccccce-----eecccccccCcceEEEEcCCCch
Confidence 2 0 111111122222 22222222211 35556677788888888887653
No 58
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=98.02 E-value=2.7e-06 Score=84.32 Aligned_cols=270 Identities=20% Similarity=0.151 Sum_probs=160.3
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhc-CCCCCccEEEcCCCCCChH----HHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELI-PSTEKLKVLHFHNNMTGDE----GAV 289 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~----~~~ 289 (541)
..+++++|+.|...+.....+ ........++.++.+...+.-.- .+..++ +..++|...+++.|..... +..
T Consensus 214 ~~lteldls~n~~Kddip~~~-n~~a~~~vl~~ld~s~tgirlD~--l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~ 290 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTL-NKKAGTLVLFKLDRSTTGIRLDL--LTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGG 290 (553)
T ss_pred ccccccccccCCCCccchhHH-HHhhhhhhhhcccccccccchhh--cccccccccccccchhhhccCCCCccccccccc
Confidence 478888888887766544433 23333345777887777654321 111111 2345777777776644322 222
Q ss_pred HHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCc--CEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCC
Q 009168 290 AISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHL--KKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNL 367 (541)
Q Consensus 290 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 367 (541)
..-+.+..-+++ +|++..++...+-...+.-.++..... -++++..|..... ..+-..+.. ..+++|.+..|++
T Consensus 291 ~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a--~vleaci~g-~R~q~l~~rdnnl 366 (553)
T KOG4242|consen 291 AEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERA--EVLEACIFG-QRVQVLLQRDNNL 366 (553)
T ss_pred ccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccccc--chhhccccc-eeeeEeecccccc
Confidence 223344445567 788888877766555444433333222 2456666655442 112222211 3478888888877
Q ss_pred ChhHHHHHHHHHhhcCCCccEEEecCCCCC-HHHHHHHHHHHhh----CCCccEEEccCCCCChhHHHHHHHHhhhcCCC
Q 009168 368 EDEGAEALAGALKECAPSLEVLDLAGNDIT-AKAASSLAACIAL----KQFLTKLNLAENELQDEGAILIGKSLEEGHGQ 442 (541)
Q Consensus 368 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~~~l~~----~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~ 442 (541)
.+++-... .++. .+.++.++++.-.-. ..+...++..+.. -.-+..+.++.|.++. ++......+. ..+.
T Consensus 367 dgeg~~vg--k~~~-s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka-~l~s~in~l~-stqt 441 (553)
T KOG4242|consen 367 DGEGGAVG--KRKQ-SKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKA-GLESAINKLL-STQT 441 (553)
T ss_pred cccccccc--ceee-ccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccc-cHHHHHHhhc-cCcc
Confidence 66554332 2222 267777777654220 0111111111111 1237888888888874 4444455555 6788
Q ss_pred ccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcC
Q 009168 443 LIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHS 496 (541)
Q Consensus 443 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 496 (541)
+..|++++|..++.|...++..+..+..++.+..+.|.+++.|+--+....+.+
T Consensus 442 l~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~gl~p~~~~~p~n 495 (553)
T KOG4242|consen 442 LAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPGLGPRNEERPLN 495 (553)
T ss_pred cccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccccchhhhhcccc
Confidence 999999999999988888888888888899999999999998888888777655
No 59
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=97.96 E-value=5e-06 Score=82.48 Aligned_cols=269 Identities=18% Similarity=0.050 Sum_probs=175.0
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChh-HHHHHHHHhhcCCCccEEEecCCCCCH---
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEK-GVRAFGALLKSQNNLEELHLMNDGISE--- 257 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~--- 257 (541)
..+++++|+.|...+.-...+... .....++.++.+...+.-+ .+..+. .+..++++..+++.|+.+.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~------a~~~vl~~ld~s~tgirlD~l~~~l~--~g~~tkl~~~kls~ng~s~skg 285 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKK------AGTLVLFKLDRSTTGIRLDLLTSPLA--AGRTTKLTFGKLSRNGTSPSKG 285 (553)
T ss_pred ccccccccccCCCCccchhHHHHh------hhhhhhhcccccccccchhhcccccc--cccccccchhhhccCCCCcccc
Confidence 589999999997766543322211 1224688888888876532 222221 2344679999998886543
Q ss_pred -HHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCC--ccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEc
Q 009168 258 -EAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPA--LEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDL 334 (541)
Q Consensus 258 -~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~--L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 334 (541)
++.....+.+..-+++ +|++.++....+....+.-.+..... =-.+++..|...... ...+-.+-..+++|.+
T Consensus 286 ~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~---vleaci~g~R~q~l~~ 361 (553)
T KOG4242|consen 286 EEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAE---VLEACIFGQRVQVLLQ 361 (553)
T ss_pred cccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccc---hhhccccceeeeEeec
Confidence 3334444445555677 88888888777655444333222222 235677777665432 2222233356999999
Q ss_pred cCCCCCchHHHHHHHhcccCCCCCEEEcccCCC---ChhHH-HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhh
Q 009168 335 RDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNL---EDEGA-EALAGALKECAPSLEVLDLAGNDITAKAASSLAACIAL 410 (541)
Q Consensus 335 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l---~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 410 (541)
++|++..++.... .+...+.++.+.+..-.- -+... ...........--+..+.++.|.+... +..+.+.+..
T Consensus 362 rdnnldgeg~~vg--k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~-l~s~in~l~s 438 (553)
T KOG4242|consen 362 RDNNLDGEGGAVG--KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAG-LESAINKLLS 438 (553)
T ss_pred ccccccccccccc--ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCccccc-HHHHHHhhcc
Confidence 9999988765544 566678889888876432 11111 111111112234588899999988754 4556666777
Q ss_pred CCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHh
Q 009168 411 KQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAV 466 (541)
Q Consensus 411 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 466 (541)
.+++.+|++++|..++.|...+++++. .+..++.+..+.|.++..|...+...+.
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq-~n~rlr~ipds~n~p~~~gl~p~~~~~p 493 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQ-SNCRLRPIPDSLNLPEDPGLGPRNEERP 493 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccC-CCCccCCCCCCCCCccccccchhhhhcc
Confidence 899999999999999999999999999 8899999999999999988665655543
No 60
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=2.6e-06 Score=62.07 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=17.7
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCC
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLN 366 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 366 (541)
+..+++|++|++++|.++... +.+|..+++|++|++++|+
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~----~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIP----PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTGTTESEEEETSSSESEEE----TTTTTTSTTESEEEETSSS
T ss_pred HcCCCCCCEeEccCCccCccC----HHHHcCCCCCCEEeCcCCc
Confidence 334444444444444444321 2334444444445444443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.5e-05 Score=52.36 Aligned_cols=37 Identities=41% Similarity=0.554 Sum_probs=20.1
Q ss_pred CccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 442 QLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 442 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+|++|++++|+|++ ++..+.++++|+.|++++|+|++
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCCC
Confidence 45666666666655 44445556666666666666553
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=7.4e-06 Score=68.09 Aligned_cols=60 Identities=28% Similarity=0.269 Sum_probs=26.1
Q ss_pred CccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 385 SLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
.++.|+|++|.|++.. ..++.+ +.|+.|+++.|.+. ..++.+. .+.+|-.|+.-+|.+-.
T Consensus 78 t~t~lNl~~neisdvP-eE~Aam----~aLr~lNl~~N~l~-----~~p~vi~-~L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 78 TATTLNLANNEISDVP-EELAAM----PALRSLNLRFNPLN-----AEPRVIA-PLIKLDMLDSPENARAE 137 (177)
T ss_pred hhhhhhcchhhhhhch-HHHhhh----HHhhhcccccCccc-----cchHHHH-HHHhHHHhcCCCCcccc
Confidence 4444444444444322 223333 44555555555544 2233333 34444445555554433
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.69 E-value=5.9e-06 Score=68.65 Aligned_cols=60 Identities=22% Similarity=0.281 Sum_probs=30.7
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCC
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 340 (541)
+.++.|+|++|.|.+ +|.-+..++.|+.|++++|.+.. .+..+..+.+|..|+..+|.+.
T Consensus 77 ~t~t~lNl~~neisd-----vPeE~Aam~aLr~lNl~~N~l~~-----~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEISD-----VPEELAAMPALRSLNLRFNPLNA-----EPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhhh-----chHHHhhhHHhhhcccccCcccc-----chHHHHHHHhHHHhcCCCCccc
Confidence 445555555555554 44444555555555555555542 3333444445555555555443
No 64
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.67 E-value=1.6e-05 Score=88.60 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=76.0
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCC--CCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDG--ISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE 293 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 293 (541)
..+.+.+-+|.+... +. -..++.|++|-+..|. +..... .++...+.|++|||++|.-.. .+|.
T Consensus 524 ~~rr~s~~~~~~~~~-----~~-~~~~~~L~tLll~~n~~~l~~is~----~ff~~m~~LrVLDLs~~~~l~----~LP~ 589 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-----AG-SSENPKLRTLLLQRNSDWLLEISG----EFFRSLPLLRVLDLSGNSSLS----KLPS 589 (889)
T ss_pred heeEEEEeccchhhc-----cC-CCCCCccceEEEeecchhhhhcCH----HHHhhCcceEEEECCCCCccC----cCCh
Confidence 556666666655321 11 1234567777777774 222111 223334778888887664222 2677
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCC
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLN 366 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 366 (541)
.++.+-+|++|+++++.+. .+|..+.+++.|.+|++..+.-... ++..+..+++|++|.+.+..
T Consensus 590 ~I~~Li~LryL~L~~t~I~-----~LP~~l~~Lk~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGIS-----HLPSGLGNLKKLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhhhhhhcccccCCCcc-----ccchHHHHHHhhheecccccccccc----ccchhhhcccccEEEeeccc
Confidence 7777777888888877776 3777777777788887777653221 13444446777777776543
No 65
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.44 E-value=0.00016 Score=48.43 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=15.5
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
+|++|++++|.|.+ ++..++.+++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-----l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-----LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-----HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-----cCchHhCCCCCCEEEecCCCCC
Confidence 34444444444444 3333444444444444444443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=5.6e-05 Score=70.37 Aligned_cols=82 Identities=29% Similarity=0.309 Sum_probs=36.1
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC-ChHHHHHH
Q 009168 383 APSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM-KRAGARLL 461 (541)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i-~~~~~~~l 461 (541)
++.|++|.|+-|.|+...+ +..|+.|++|+|..|.|.+..-. ..|+ ++++|+.|.|..|.- ...|..+=
T Consensus 40 Mp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~sldEL---~YLk-nlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIESLDEL---EYLK-NLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cccceeEEeeccccccchh------HHHHHHHHHHHHHhcccccHHHH---HHHh-cCchhhhHhhccCCcccccchhHH
Confidence 3555555555555544321 22225555555555555433211 1222 455555555555532 22333333
Q ss_pred HHHHhcCCCccEE
Q 009168 462 AQVAVNKPGLKML 474 (541)
Q Consensus 462 ~~~l~~~~~L~~L 474 (541)
...+..+|+|+.|
T Consensus 110 ~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 110 RKVLRVLPNLKKL 122 (388)
T ss_pred HHHHHHcccchhc
Confidence 4444445555544
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.32 E-value=0.00013 Score=64.85 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=37.4
Q ss_pred CCCCccEEEcCCCCCChHHHHHHHHHhh-cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHH
Q 009168 269 STEKLKVLHFHNNMTGDEGAVAISEIVK-HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVAL 347 (541)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 347 (541)
..+.|.+|.+++|+|+. +...+. .+++|..|.|.+|+|..-|. ...+..|++|+.|.+-+|.++..... =
T Consensus 62 ~l~rL~tLll~nNrIt~-----I~p~L~~~~p~l~~L~LtnNsi~~l~d---l~pLa~~p~L~~Ltll~Npv~~k~~Y-R 132 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITR-----IDPDLDTFLPNLKTLILTNNSIQELGD---LDPLASCPKLEYLTLLGNPVEHKKNY-R 132 (233)
T ss_pred CccccceEEecCCccee-----eccchhhhccccceEEecCcchhhhhh---cchhccCCccceeeecCCchhcccCc-e
Confidence 33455555555555443 222221 23445555555555433221 12244555555555555554432100 0
Q ss_pred HHhcccCCCCCEEEcccC
Q 009168 348 SEVLPAFPDLTEVYLSYL 365 (541)
Q Consensus 348 ~~~l~~~~~L~~L~L~~n 365 (541)
.-.+..+|+|+.||+..-
T Consensus 133 ~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEEEecCcceEeehhhh
Confidence 112334555555555443
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=9e-05 Score=65.93 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=7.7
Q ss_pred cccCCCCCEEEcccCCCC
Q 009168 351 LPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~ 368 (541)
|..++.|.+|.|+.|+|+
T Consensus 60 lp~l~rL~tLll~nNrIt 77 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRIT 77 (233)
T ss_pred CCCccccceEEecCCcce
Confidence 334444444444444443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=0.0001 Score=68.34 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=17.3
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC
Q 009168 440 HGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 440 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
+++|++|++++|+|.. +..+. .++...+|..|++.+|..+
T Consensus 90 ~P~l~~l~ls~Nki~~--lstl~-pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 90 APNLKVLNLSGNKIKD--LSTLR-PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCceeEEeecCCcccc--ccccc-hhhhhcchhhhhcccCCcc
Confidence 3555555555554443 11121 1233444555555555443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.00012 Score=68.21 Aligned_cols=105 Identities=22% Similarity=0.219 Sum_probs=73.1
Q ss_pred CCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH
Q 009168 298 SPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG 377 (541)
Q Consensus 298 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 377 (541)
+.+.+.|++-+|.+++.. ....++.|+.|.|+=|.|+. ...+..|++|++|+|..|.|.+.. .+.
T Consensus 18 l~~vkKLNcwg~~L~DIs------ic~kMp~lEVLsLSvNkIss------L~pl~rCtrLkElYLRkN~I~sld--EL~- 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS------ICEKMPLLEVLSLSVNKISS------LAPLQRCTRLKELYLRKNCIESLD--ELE- 82 (388)
T ss_pred HHHhhhhcccCCCccHHH------HHHhcccceeEEeecccccc------chhHHHHHHHHHHHHHhcccccHH--HHH-
Confidence 456788888888888653 23578888888888888886 455778888888888888887532 221
Q ss_pred HHhhcCCCccEEEecCCCCCHHHH-HHHHHHHhhCCCccEEE
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAA-SSLAACIALKQFLTKLN 418 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~-~~l~~~l~~~~~L~~L~ 418 (541)
.| .++|+|+.|.|..|.-.+.+. ..-...+...|+|++||
T Consensus 83 YL-knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YL-KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HH-hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 12 236888888888886555443 33334455568888876
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.08 E-value=0.00026 Score=71.18 Aligned_cols=137 Identities=15% Similarity=0.242 Sum_probs=83.4
Q ss_pred HhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCccEEEecCC-CCChhH
Q 009168 238 LLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNN-MTGDEGAVAISEIVKHSPALEDFRCSST-RIGAEG 315 (541)
Q Consensus 238 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~ 315 (541)
-+..|.++++|++++|.++... .+ .++|+.|.++++ .+.. ++..+ .++|++|++++| .+.
T Consensus 47 r~~~~~~l~~L~Is~c~L~sLP-----~L---P~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~--- 108 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESLP-----VL---PNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEIS--- 108 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcccC-----CC---CCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCccccc---
Confidence 3566789999999999876531 11 247999999874 3332 33333 257999999988 443
Q ss_pred HHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccC-CCCCEEEcccCC-CChhH-HHHHHHHHhhcCCCccEEEec
Q 009168 316 GIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAF-PDLTEVYLSYLN-LEDEG-AEALAGALKECAPSLEVLDLA 392 (541)
Q Consensus 316 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~-l~~~~-~~~l~~~l~~~~~~L~~L~L~ 392 (541)
.++ .+|+.|++..+.... +..+ ++|+.|.+.+++ ..... +..+ .++|+.|+++
T Consensus 109 --sLP------~sLe~L~L~~n~~~~---------L~~LPssLk~L~I~~~n~~~~~~lp~~L-------PsSLk~L~Is 164 (426)
T PRK15386 109 --GLP------ESVRSLEIKGSATDS---------IKNVPNGLTSLSINSYNPENQARIDNLI-------SPSLKTLSLT 164 (426)
T ss_pred --ccc------cccceEEeCCCCCcc---------cccCcchHhheecccccccccccccccc-------CCcccEEEec
Confidence 122 468888887766543 1223 367788775432 11110 1111 2689999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCccEEEccCCC
Q 009168 393 GNDITAKAASSLAACIALKQFLTKLNLAENE 423 (541)
Q Consensus 393 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 423 (541)
+|..... +.. + ..+|+.|.++.|.
T Consensus 165 ~c~~i~L-P~~----L--P~SLk~L~ls~n~ 188 (426)
T PRK15386 165 GCSNIIL-PEK----L--PESLQSITLHIEQ 188 (426)
T ss_pred CCCcccC-ccc----c--cccCcEEEecccc
Confidence 8875421 111 1 2579999998763
No 72
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.98 E-value=0.0011 Score=39.45 Aligned_cols=26 Identities=38% Similarity=0.599 Sum_probs=16.8
Q ss_pred CCccEEEccCCCCChhHHHHHHHHhh
Q 009168 412 QFLTKLNLAENELQDEGAILIGKSLE 437 (541)
Q Consensus 412 ~~L~~L~Ls~n~l~~~g~~~l~~~l~ 437 (541)
++|++|+|++|.|++.|+..+++++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45666666666666666666666553
No 73
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.96 E-value=0.0024 Score=61.32 Aligned_cols=121 Identities=21% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCCCEEEcccC-CCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHH
Q 009168 355 PDLTEVYLSYL-NLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIG 433 (541)
Q Consensus 355 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 433 (541)
+.+...+++.+ +|.......++.+++.+ ...+...+.+-...+..+-+++.++..|++|++|++.+|.|+..|+.++.
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~n-t~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~ 276 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNN-THVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALL 276 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcC-chhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHH
Confidence 45556666554 34444455566666554 55666666666666666667777777777777777777777777777777
Q ss_pred HHhhhcCCCccEEEccCC--CCChHHHHHHHHHHhcCCCccEEEec
Q 009168 434 KSLEEGHGQLIEIDLSTN--SMKRAGARLLAQVAVNKPGLKMLNIN 477 (541)
Q Consensus 434 ~~l~~~~~~L~~L~Ls~n--~i~~~~~~~l~~~l~~~~~L~~L~L~ 477 (541)
.++. .+.+|.++...+- .++......++..+..+.+|-.+-+.
T Consensus 277 ~al~-~n~tl~el~~dnqrq~lg~~vemeia~~leen~sllk~gy~ 321 (353)
T KOG3735|consen 277 RALQ-SNKSLTELKNDNQRQVLGNAVEMEIALELEENASLLKFGYH 321 (353)
T ss_pred HHHh-ccchhhHhhhhhHHhhcccHHHHHHHHHHHhcccccccccc
Confidence 7777 6777777665543 34555555677777777766554443
No 74
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=96.92 E-value=0.0013 Score=39.21 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=16.3
Q ss_pred CCccEEEecCCCCChhHHHHHHHHHh
Q 009168 469 PGLKMLNINGNFIPDEGIDEVKEILK 494 (541)
Q Consensus 469 ~~L~~L~L~~N~i~~~g~~~l~~~l~ 494 (541)
++|++|+|++|.|+++|+..++++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEALK 27 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHhc
Confidence 45666666666666666666666553
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00055 Score=61.09 Aligned_cols=101 Identities=19% Similarity=0.181 Sum_probs=68.3
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHHHHhhhcCCCccEEEccCC-CCChHHHHHH
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIGKSLEEGHGQLIEIDLSTN-SMKRAGARLL 461 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l 461 (541)
..++.++-+++.|...+...+..+ +.|+.|.+.+| .+.|.++..|.. ..++|+.|+|++| +||+.|+..+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l----~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL~~L 172 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL----RSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGLACL 172 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc----chhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHHHHH
Confidence 356777777777777777666555 77888888777 477777776665 4578888888877 6888876665
Q ss_pred HHHHhcCCCccEEEecCCCCC---hhHHHHHHHHHhcC
Q 009168 462 AQVAVNKPGLKMLNINGNFIP---DEGIDEVKEILKHS 496 (541)
Q Consensus 462 ~~~l~~~~~L~~L~L~~N~i~---~~g~~~l~~~l~~~ 496 (541)
.. .++|+.|.|.+=+.. +.-...+.+++++.
T Consensus 173 ~~----lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c 206 (221)
T KOG3864|consen 173 LK----LKNLRRLHLYDLPYVANLELVQRQLEEALPKC 206 (221)
T ss_pred HH----hhhhHHHHhcCchhhhchHHHHHHHHHhCccc
Confidence 43 467777777654322 23355566666655
No 76
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=96.70 E-value=0.0034 Score=60.28 Aligned_cols=116 Identities=24% Similarity=0.297 Sum_probs=79.4
Q ss_pred CCccEEEecCC-CCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHH
Q 009168 243 NNLEELHLMND-GISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAK 321 (541)
Q Consensus 243 ~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 321 (541)
+.++.++|+++ .|.......+...+..++..+.+.+.+....+..+..++.++..++.|++|++.+|.|++.|+.++..
T Consensus 198 ~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a~~~ 277 (353)
T KOG3735|consen 198 TGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMALLR 277 (353)
T ss_pred CCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheeccccccccHHHHHHHH
Confidence 55777777776 46666677777777777777777777777777777777777777778888888888888887777777
Q ss_pred HhhcCCCcCEEEccCC--CCCchHHHHHHHhcccCCCCC
Q 009168 322 ALGQCTHLKKLDLRDN--MFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 322 ~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++....+|..+...+- .++......+...+..+.+|-
T Consensus 278 al~~n~tl~el~~dnqrq~lg~~vemeia~~leen~sll 316 (353)
T KOG3735|consen 278 ALQSNKSLTELKNDNQRQVLGNAVEMEIALELEENASLL 316 (353)
T ss_pred HHhccchhhHhhhhhHHhhcccHHHHHHHHHHHhccccc
Confidence 7777777776654332 134444444555555555543
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.64 E-value=0.0026 Score=64.13 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=52.6
Q ss_pred HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHhcccCCCCCEEEcccC-CCChh
Q 009168 293 EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEVLPAFPDLTEVYLSYL-NLEDE 370 (541)
Q Consensus 293 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~ 370 (541)
..+..++.+++|++++|.++. ++ .--.+|+.|.+++|. ++. ++..+ .++|+.|++++| .+..
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~s-----LP---~LP~sLtsL~Lsnc~nLts-----LP~~L--P~nLe~L~Ls~Cs~L~s- 109 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIES-----LP---VLPNELTEITIENCNNLTT-----LPGSI--PEGLEKLTVCHCPEISG- 109 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcc-----cC---CCCCCCcEEEccCCCCccc-----CCchh--hhhhhheEccCcccccc-
Confidence 445667999999999998764 33 122469999998854 432 23333 257999999988 4431
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 371 GAEALAGALKECAPSLEVLDLAGNDIT 397 (541)
Q Consensus 371 ~~~~l~~~l~~~~~~L~~L~L~~n~l~ 397 (541)
+ ..+|+.|++.++...
T Consensus 110 ----L-------P~sLe~L~L~~n~~~ 125 (426)
T PRK15386 110 ----L-------PESVRSLEIKGSATD 125 (426)
T ss_pred ----c-------ccccceEEeCCCCCc
Confidence 2 257888888876543
No 78
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.49 E-value=0.0012 Score=61.39 Aligned_cols=42 Identities=43% Similarity=0.669 Sum_probs=19.5
Q ss_pred cccCCCCCEEEcccC--CCChhHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 351 LPAFPDLTEVYLSYL--NLEDEGAEALAGALKECAPSLEVLDLAGNDIT 397 (541)
Q Consensus 351 l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 397 (541)
+..+++|+.|.++.| ++.. ++..++. .+|+|++|++++|.|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e----~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSG-GLEVLAE----KAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccc-cceehhh----hCCceeEEeecCCccc
Confidence 444555566666655 2221 1222221 2355555555555554
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.18 E-value=0.0031 Score=36.02 Aligned_cols=22 Identities=36% Similarity=0.670 Sum_probs=11.2
Q ss_pred CCccEEEecCCCCChhHHHHHH
Q 009168 469 PGLKMLNINGNFIPDEGIDEVK 490 (541)
Q Consensus 469 ~~L~~L~L~~N~i~~~g~~~l~ 490 (541)
++|++|+|++|+|+++|+..|+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 4555555555555555555554
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.0028 Score=56.68 Aligned_cols=83 Identities=23% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCC-CCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHH
Q 009168 356 DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGND-ITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIG 433 (541)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~ 433 (541)
.++.++-+++.|..+|...+.. ++.++.|.+.+|. +.+.+.+.++. -.++|+.|+|++| .|++.|+..|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-----l~~i~~l~l~~ck~~dD~~L~~l~~---~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-----LRSIKSLSLANCKYFDDWCLERLGG---LAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-----cchhhhheeccccchhhHHHHHhcc---cccchheeeccCCCeechhHHHHHH
Confidence 4666777777777777777654 5777777777773 44444444444 2367888888877 57777766554
Q ss_pred HHhhhcCCCccEEEccCC
Q 009168 434 KSLEEGHGQLIEIDLSTN 451 (541)
Q Consensus 434 ~~l~~~~~~L~~L~Ls~n 451 (541)
.+++|+.|++.+=
T Consensus 174 -----~lknLr~L~l~~l 186 (221)
T KOG3864|consen 174 -----KLKNLRRLHLYDL 186 (221)
T ss_pred -----HhhhhHHHHhcCc
Confidence 4667777766653
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.03 E-value=0.0045 Score=35.31 Aligned_cols=21 Identities=38% Similarity=0.609 Sum_probs=9.2
Q ss_pred CCccEEEccCCCCChhHHHHH
Q 009168 412 QFLTKLNLAENELQDEGAILI 432 (541)
Q Consensus 412 ~~L~~L~Ls~n~l~~~g~~~l 432 (541)
++|++|+|++|.|++.|+..|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 444555555555555444444
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=93.44 E-value=0.081 Score=30.73 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=11.7
Q ss_pred CCccEEEecCCC-CChhHHHHHH
Q 009168 469 PGLKMLNINGNF-IPDEGIDEVK 490 (541)
Q Consensus 469 ~~L~~L~L~~N~-i~~~g~~~l~ 490 (541)
++|++|+|++|+ |+|.|+..+.
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHHh
Confidence 455555555552 5555555544
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=92.29 E-value=0.16 Score=29.44 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=10.3
Q ss_pred CCccEEEccCC-CCChHHHHHH
Q 009168 441 GQLIEIDLSTN-SMKRAGARLL 461 (541)
Q Consensus 441 ~~L~~L~Ls~n-~i~~~~~~~l 461 (541)
++|++|+|++| .|++.|+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 44555555555 3555554444
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.59 E-value=0.076 Score=44.75 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=5.8
Q ss_pred CCccEEEccCC
Q 009168 412 QFLTKLNLAEN 422 (541)
Q Consensus 412 ~~L~~L~Ls~n 422 (541)
++|+.+++..+
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 55555555443
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.63 E-value=0.63 Score=23.94 Aligned_cols=11 Identities=64% Similarity=0.836 Sum_probs=3.4
Q ss_pred eeEEEcCCCCC
Q 009168 217 LRYLNLSHNAL 227 (541)
Q Consensus 217 L~~L~Ls~n~l 227 (541)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.37 E-value=1.2 Score=46.22 Aligned_cols=68 Identities=24% Similarity=0.262 Sum_probs=34.7
Q ss_pred hcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC--CCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 381 ECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN--ELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 381 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
.+.+.+..+.|++|++... ..+..+....|.|+.|+|++| .+... ..+.+. +...|++|.+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~L--d~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~---k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHL--DALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKL---KGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhch--hhhhHHHHhcchhheeecccchhhhcch--hhhhhh---cCCCHHHeeecCCcccc
Confidence 3456667777777766542 233334444566666666666 33321 111111 24456666666665543
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=84.21 E-value=2 Score=44.80 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=71.9
Q ss_pred cCCCCCEEEcccCCCChhH-HHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHH--
Q 009168 353 AFPDLTEVYLSYLNLEDEG-AEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGA-- 429 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~-- 429 (541)
..+.+..++|++|++.... +..+.. ..|+|..|+|++|...-.....+... ...-|++|.|.||.+...-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq----~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~ 289 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ----IAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDR 289 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH----hcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhh
Confidence 4578888999999876422 233332 24889999999982222222222222 12458889999998775322
Q ss_pred HHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
..-..++.+..|+|..|| |..+...- .. ....=.-.-+.+|.+..++++.+...|-.
T Consensus 290 s~yv~~i~~~FPKL~~LD--G~ev~~~~----~d---~~~~~~~~p~k~~ff~~~~l~~LV~~Fl~ 346 (585)
T KOG3763|consen 290 SEYVSAIRELFPKLLRLD--GVEVQPEV----ID---INASETPMPCKQNFFGSEELKQLVLQFLQ 346 (585)
T ss_pred HHHHHHHHHhcchheeec--CcccCccc----cc---cccccCCcchhhcccCchHHHHHHHHHHH
Confidence 122224443577776665 55555531 10 00001122346777888888888777653
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.71 E-value=0.15 Score=28.23 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=5.2
Q ss_pred ccEEEccCCCCC
Q 009168 443 LIEIDLSTNSMK 454 (541)
Q Consensus 443 L~~L~Ls~n~i~ 454 (541)
|++|||++|+|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444443
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.10 E-value=0.88 Score=38.10 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=3.1
Q ss_pred CCCccEEEec
Q 009168 242 QNNLEELHLM 251 (541)
Q Consensus 242 ~~~L~~L~L~ 251 (541)
|++|+.+.+.
T Consensus 11 ~~~l~~i~~~ 20 (129)
T PF13306_consen 11 CSNLESITFP 20 (129)
T ss_dssp -TT--EEEET
T ss_pred CCCCCEEEEC
Confidence 3444444443
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=67.91 E-value=3.9 Score=23.38 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=5.0
Q ss_pred ccEEEccCCCCC
Q 009168 414 LTKLNLAENELQ 425 (541)
Q Consensus 414 L~~L~Ls~n~l~ 425 (541)
|+.|+|++|.|.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444433
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=67.91 E-value=3.9 Score=23.38 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=5.0
Q ss_pred ccEEEccCCCCC
Q 009168 414 LTKLNLAENELQ 425 (541)
Q Consensus 414 L~~L~Ls~n~l~ 425 (541)
|+.|+|++|.|.
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 344444444433
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.49 E-value=5.8 Score=23.02 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=8.5
Q ss_pred CCccEEEccCCCCCh
Q 009168 441 GQLIEIDLSTNSMKR 455 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~ 455 (541)
++|+.|+|++|.|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 455666666665543
No 93
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=59.27 E-value=4 Score=44.78 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=7.8
Q ss_pred CChhhHHHHHHHHH
Q 009168 20 PSQSTRLMLVQRMT 33 (541)
Q Consensus 20 ~~~~~~~~~~~r~~ 33 (541)
|++.+|.++|+|+.
T Consensus 692 ~pp~~r~s~i~~v~ 705 (1516)
T KOG1832|consen 692 PPPTTRPSTIVAVG 705 (1516)
T ss_pred CCCCcchhhhhhcc
Confidence 44455666666653
No 94
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=54.40 E-value=20 Score=27.59 Aligned_cols=44 Identities=20% Similarity=0.409 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccCcchh--hhhhcc-CCCHHHHHHHHHHHHHHHHHHH
Q 009168 25 RLMLVQRMTKNLTTPSI--FSRKYG-LLSKEEAEEDAKQIEELAFAAA 69 (541)
Q Consensus 25 ~~~~~~r~~~~~~~~~~--~~~~~~-~~~~~ea~~~~~~i~~~a~~~a 69 (541)
+..|-+|+ +++|..++ .++.|| .+++++|...++.+++..++.-
T Consensus 5 qqiVn~Kl-n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIf 51 (85)
T PF11116_consen 5 QQIVNQKL-NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIF 51 (85)
T ss_pred HHHHHHHH-hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45777888 99998886 688999 8999999999888877654433
No 95
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=52.78 E-value=5.1 Score=40.50 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=7.8
Q ss_pred EEecCCCCChhHHHHHHHH
Q 009168 474 LNINGNFIPDEGIDEVKEI 492 (541)
Q Consensus 474 L~L~~N~i~~~g~~~l~~~ 492 (541)
|.|+.|.-.+..|..|.+-
T Consensus 26 lTi~DtlkKE~~IRkLgeE 44 (458)
T PF10446_consen 26 LTINDTLKKENAIRKLGEE 44 (458)
T ss_pred ccHHHHHHHHHHHhhhhHH
Confidence 3344443333344444443
No 96
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.13 E-value=35 Score=25.40 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=35.1
Q ss_pred ecCCChhhHHHHHHHHHhccCcchhhhhhccCCCHHHHHHHHHHHHHH
Q 009168 17 LWPPSQSTRLMLVQRMTKNLTTPSIFSRKYGLLSKEEAEEDAKQIEEL 64 (541)
Q Consensus 17 ~w~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ea~~~~~~i~~~ 64 (541)
.|......-..||.||+..-.....+..-+|.++++||.++.+.+++.
T Consensus 16 ~~K~~~eSFSdvI~rli~~~~~~~~l~~~~g~l~deea~~~~~~i~e~ 63 (71)
T PF02697_consen 16 KLKREDESFSDVIERLIEKEKKRRDLMDYFGILSDEEADEMEKDIKEE 63 (71)
T ss_pred HHhcCCCCHHHHHHHHHhcccchhHHHHHhccCChhhHHHHHHHHHHH
Confidence 466666777899999987333333455667899999998888877665
No 97
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=49.99 E-value=0.37 Score=44.44 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=27.5
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCC
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 340 (541)
+.|..|+++.|.+.- ++.-++....++.+++..|.... .|..+...++++++++-+|.|.
T Consensus 65 t~~~rl~~sknq~~~-----~~~d~~q~~e~~~~~~~~n~~~~-----~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIKF-----LPKDAKQQRETVNAASHKNNHSQ-----QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHhccHhhHhh-----ChhhHHHHHHHHHHHhhccchhh-----CCccccccCCcchhhhccCcch
Confidence 344555555554432 33333333334444444444431 3344455555555555555543
No 98
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=49.80 E-value=14 Score=41.87 Aligned_cols=16 Identities=13% Similarity=0.466 Sum_probs=14.0
Q ss_pred CCCChhHHHHHHHHHh
Q 009168 479 NFIPDEGIDEVKEILK 494 (541)
Q Consensus 479 N~i~~~g~~~l~~~l~ 494 (541)
..++..|+..+...+.
T Consensus 618 ~~~t~~~l~~ll~vl~ 633 (784)
T PF04931_consen 618 PHLTESGLQLLLDVLD 633 (784)
T ss_pred hhcCHHHHHHHHHHhc
Confidence 4689999999999998
No 99
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=48.48 E-value=0.5 Score=43.62 Aligned_cols=87 Identities=18% Similarity=0.099 Sum_probs=43.8
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHH
Q 009168 353 AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILI 432 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 432 (541)
.....+.||++.|++-..+.. +.. ++.|..|+++.|.|.- .+..+.+. ..++.+++-.|..+ ..
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n-~s~-----~t~~~rl~~sknq~~~-~~~d~~q~----~e~~~~~~~~n~~~-----~~ 103 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKN-FSI-----LTRLVRLDLSKNQIKF-LPKDAKQQ----RETVNAASHKNNHS-----QQ 103 (326)
T ss_pred ccceeeeehhhhhHHHhhccc-hHH-----HHHHHHHhccHhhHhh-ChhhHHHH----HHHHHHHhhccchh-----hC
Confidence 345566666666654322211 111 2455666666665432 12222222 44555566566555 34
Q ss_pred HHHhhhcCCCccEEEccCCCCChH
Q 009168 433 GKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 433 ~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
+.... ..++++.+++-+|.+...
T Consensus 104 p~s~~-k~~~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 104 PKSQK-KEPHPKKNEQKKTEFFRK 126 (326)
T ss_pred Ccccc-ccCCcchhhhccCcchHH
Confidence 44444 566666666666666554
No 100
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=45.24 E-value=14 Score=21.41 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=9.0
Q ss_pred CccEEEcCCCcCCCch
Q 009168 183 QLTEVDLSDFIAGRPE 198 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~ 198 (541)
+|+.|+.++|+++..+
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 4556666666555543
No 101
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=42.14 E-value=25 Score=32.64 Aligned_cols=14 Identities=14% Similarity=0.067 Sum_probs=7.6
Q ss_pred CChhHHHHHHHHHh
Q 009168 481 IPDEGIDEVKEILK 494 (541)
Q Consensus 481 i~~~g~~~l~~~l~ 494 (541)
|+..-+..+.+.+.
T Consensus 44 Ig~k~AekI~e~l~ 57 (232)
T PRK12766 44 IGNALAARIKADVG 57 (232)
T ss_pred CCHHHHHHHHHHhc
Confidence 45555566655553
No 102
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=30.21 E-value=23 Score=38.49 Aligned_cols=8 Identities=38% Similarity=0.414 Sum_probs=3.9
Q ss_pred eEEEeeCC
Q 009168 156 TRICFSNK 163 (541)
Q Consensus 156 ~~L~Ls~~ 163 (541)
+.+.++-+
T Consensus 467 TSiylsP~ 474 (911)
T PF05086_consen 467 TSIYLSPN 474 (911)
T ss_pred eeEEEecC
Confidence 44555544
No 103
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=24.68 E-value=42 Score=30.84 Aligned_cols=16 Identities=25% Similarity=0.220 Sum_probs=8.5
Q ss_pred CCCCCEEEcccCCCCh
Q 009168 354 FPDLTEVYLSYLNLED 369 (541)
Q Consensus 354 ~~~L~~L~L~~n~l~~ 369 (541)
+.+++--.|.+|++.+
T Consensus 195 caN~eGA~L~gcNfed 210 (302)
T KOG1665|consen 195 CANAEGASLKGCNFED 210 (302)
T ss_pred ecccccccccCcCCCC
Confidence 3455555555565553
No 104
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=22.13 E-value=1.9e+02 Score=21.43 Aligned_cols=40 Identities=25% Similarity=0.542 Sum_probs=30.2
Q ss_pred EEecCCChhhHHHHHHHHHhccCcchhhhhhccCCCHHHHHHHHHHH
Q 009168 15 VKLWPPSQSTRLMLVQRMTKNLTTPSIFSRKYGLLSKEEAEEDAKQI 61 (541)
Q Consensus 15 ~~~w~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ea~~~~~~i 61 (541)
++-||..+..|..+...++..+. +. ...++.|..+..+.+
T Consensus 3 L~~~P~k~~~r~~iL~~l~~~f~-~g------~~y~E~EVN~~L~~~ 42 (71)
T PF09860_consen 3 LKRWPSKRKKRLVILEYLASRFE-PG------REYSEKEVNEILKRF 42 (71)
T ss_pred ccccCccHHHHHHHHHHHHHhCC-CC------CccCHHHHHHHHHHH
Confidence 45799999999999999988773 21 156777777766665
No 105
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=21.75 E-value=64 Score=18.56 Aligned_cols=7 Identities=29% Similarity=0.491 Sum_probs=2.6
Q ss_pred eEEEcCC
Q 009168 218 RYLNLSH 224 (541)
Q Consensus 218 ~~L~Ls~ 224 (541)
++|.|..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3333333
No 106
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=21.28 E-value=71 Score=25.20 Aligned_cols=10 Identities=0% Similarity=-0.054 Sum_probs=4.3
Q ss_pred HHHHHHHhcC
Q 009168 487 DEVKEILKHS 496 (541)
Q Consensus 487 ~~l~~~l~~~ 496 (541)
..+..+....
T Consensus 72 SdWiDaCe~v 81 (109)
T KOG3214|consen 72 SDWIDACEAV 81 (109)
T ss_pred HHHHHHHHHh
Confidence 3444444443
Done!