Query 009168
Match_columns 541
No_of_seqs 494 out of 3438
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 20:21:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z7x_W Ribonuclease inhibitor; 100.0 5.4E-39 1.8E-43 336.5 38.0 378 117-504 52-433 (461)
2 2ca6_A RAN GTPase-activating p 100.0 1.5E-38 5E-43 325.5 29.3 281 215-497 32-333 (386)
3 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-37 5.7E-42 325.2 36.4 369 117-497 24-398 (461)
4 2ca6_A RAN GTPase-activating p 100.0 2.3E-36 8E-41 309.1 29.0 315 125-469 3-333 (386)
5 3goz_A Leucine-rich repeat-con 100.0 4.7E-32 1.6E-36 274.6 18.5 280 215-495 22-310 (362)
6 3goz_A Leucine-rich repeat-con 100.0 1.6E-30 5.5E-35 263.3 17.7 297 158-466 3-309 (362)
7 3ogk_B Coronatine-insensitive 99.9 3.6E-25 1.2E-29 238.9 24.9 227 242-495 292-539 (592)
8 3ogk_B Coronatine-insensitive 99.9 1.3E-24 4.5E-29 234.5 27.0 340 119-495 110-514 (592)
9 2p1m_B Transport inhibitor res 99.9 7E-25 2.4E-29 236.7 23.9 227 242-496 288-533 (594)
10 3v47_A TOLL-like receptor 5B a 99.9 5.2E-28 1.8E-32 252.6 -0.7 328 120-496 29-424 (455)
11 4fmz_A Internalin; leucine ric 99.9 3.7E-25 1.3E-29 222.5 16.3 283 120-483 43-325 (347)
12 4fmz_A Internalin; leucine ric 99.9 8.2E-25 2.8E-29 220.0 17.3 286 117-483 62-347 (347)
13 2p1m_B Transport inhibitor res 99.9 7.9E-24 2.7E-28 228.5 25.5 333 117-494 101-506 (594)
14 2id5_A Lingo-1, leucine rich r 99.9 2.1E-27 7.2E-32 249.6 -6.1 305 119-483 30-334 (477)
15 3rgz_A Protein brassinosteroid 99.9 2.4E-27 8.2E-32 263.3 -7.6 235 216-483 419-718 (768)
16 3o6n_A APL1; leucine-rich repe 99.9 3.2E-26 1.1E-30 234.1 1.2 162 298-495 204-365 (390)
17 3rgz_A Protein brassinosteroid 99.9 1.2E-27 4.1E-32 265.8 -10.9 317 115-484 312-695 (768)
18 2z80_A TOLL-like receptor 2, v 99.9 1.1E-25 3.7E-30 227.1 3.8 274 182-497 52-331 (353)
19 3v47_A TOLL-like receptor 5B a 99.9 2.5E-26 8.7E-31 239.8 -1.3 306 124-483 13-385 (455)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-25 5.9E-30 237.6 4.0 172 297-495 322-496 (520)
21 3oja_B Anopheles plasmodium-re 99.9 3.1E-25 1.1E-29 239.4 3.6 269 153-491 99-367 (597)
22 1o6v_A Internalin A; bacterial 99.9 7.4E-24 2.5E-28 221.8 13.1 193 241-483 175-367 (466)
23 3o6n_A APL1; leucine-rich repe 99.9 8.2E-26 2.8E-30 231.1 -1.9 292 119-485 43-334 (390)
24 3un9_A NLR family member X1; l 99.9 2.8E-22 9.7E-27 202.5 23.7 188 243-434 72-261 (372)
25 2id5_A Lingo-1, leucine rich r 99.9 6.1E-26 2.1E-30 238.5 -4.4 299 124-485 14-312 (477)
26 3un9_A NLR family member X1; l 99.9 2.2E-22 7.5E-27 203.4 21.8 215 271-490 72-291 (372)
27 1o6v_A Internalin A; bacterial 99.9 3.5E-23 1.2E-27 216.7 15.1 281 119-484 66-346 (466)
28 3t6q_A CD180 antigen; protein- 99.9 1.2E-25 4.2E-30 243.3 -4.2 90 268-369 275-364 (606)
29 3oja_B Anopheles plasmodium-re 99.9 3E-25 1E-29 239.6 -2.2 291 120-485 50-340 (597)
30 2z81_A CD282 antigen, TOLL-lik 99.9 4.3E-24 1.5E-28 228.4 6.8 311 121-482 26-423 (549)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-24 4.2E-29 233.3 0.8 168 297-491 351-520 (562)
32 2z7x_B TOLL-like receptor 1, v 99.9 5.8E-24 2E-28 225.8 5.6 128 121-283 21-150 (520)
33 3t6q_A CD180 antigen; protein- 99.9 3.7E-25 1.3E-29 239.6 -4.5 42 323-369 274-315 (606)
34 4eco_A Uncharacterized protein 99.9 3E-25 1E-29 241.1 -5.5 290 153-483 206-527 (636)
35 4eco_A Uncharacterized protein 99.9 6.9E-25 2.4E-29 238.2 -3.2 221 115-368 200-446 (636)
36 1xku_A Decorin; proteoglycan, 99.9 5.6E-25 1.9E-29 219.7 -4.0 298 122-480 32-330 (330)
37 4ecn_A Leucine-rich repeat pro 99.9 5.2E-24 1.8E-28 236.1 3.0 248 115-397 442-710 (876)
38 2ast_B S-phase kinase-associat 99.9 6.5E-22 2.2E-26 197.8 17.9 209 242-483 92-307 (336)
39 1xku_A Decorin; proteoglycan, 99.9 1.8E-24 6.2E-29 216.0 -1.0 276 153-484 31-308 (330)
40 2z81_A CD282 antigen, TOLL-lik 99.9 3.7E-22 1.2E-26 213.4 16.7 192 270-496 333-526 (549)
41 4ecn_A Leucine-rich repeat pro 99.9 4.7E-24 1.6E-28 236.4 1.3 260 182-483 491-767 (876)
42 3vq2_A TLR4, TOLL-like recepto 99.9 5.4E-25 1.9E-29 238.2 -6.9 89 383-483 447-535 (606)
43 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-24 1.1E-28 232.1 -1.2 152 322-496 419-573 (606)
44 2ast_B S-phase kinase-associat 99.9 2.6E-21 9E-26 193.4 19.0 255 153-456 47-308 (336)
45 1ziw_A TOLL-like receptor 3; i 99.9 3.3E-24 1.1E-28 235.3 -2.8 306 121-480 25-364 (680)
46 2z63_A TOLL-like receptor 4, v 99.9 1.2E-24 4E-29 233.7 -7.4 167 297-483 345-532 (570)
47 2ft3_A Biglycan; proteoglycan, 99.9 8.3E-25 2.8E-29 218.6 -9.8 276 153-479 54-330 (332)
48 2z63_A TOLL-like receptor 4, v 99.9 1.3E-24 4.3E-29 233.5 -10.4 146 324-484 344-509 (570)
49 3o53_A Protein LRIM1, AGAP0063 99.9 5.4E-24 1.8E-28 211.3 -5.1 260 153-477 10-270 (317)
50 2ft3_A Biglycan; proteoglycan, 99.9 1.9E-24 6.4E-29 216.1 -8.7 273 153-483 33-308 (332)
51 1ziw_A TOLL-like receptor 3; i 99.8 6.8E-23 2.3E-27 224.8 1.4 280 124-455 7-286 (680)
52 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-24 6.3E-29 242.6 -12.4 140 119-285 22-162 (844)
53 3bz5_A Internalin-J, INLJ; leu 99.8 4.3E-22 1.5E-26 207.3 6.0 170 269-483 168-353 (457)
54 1ogq_A PGIP-2, polygalacturona 99.8 4.6E-25 1.6E-29 218.5 -16.2 224 216-480 77-302 (313)
55 3j0a_A TOLL-like receptor 5; m 99.8 7.7E-23 2.6E-27 229.4 -0.9 173 272-482 267-439 (844)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.2E-22 1.1E-26 214.5 3.3 310 120-482 51-463 (562)
57 2z80_A TOLL-like receptor 2, v 99.8 2.7E-22 9.2E-27 202.2 2.2 256 183-483 32-291 (353)
58 4glp_A Monocyte differentiatio 99.8 1.4E-22 4.7E-27 200.5 -0.6 247 215-485 64-310 (310)
59 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-22 5E-27 200.9 -0.6 221 215-486 34-254 (317)
60 1wwl_A Monocyte differentiatio 99.8 2.1E-22 7.2E-27 199.3 0.3 213 241-485 93-312 (312)
61 2z66_A Variable lymphocyte rec 99.8 1.7E-23 5.7E-28 206.7 -7.7 243 216-496 29-276 (306)
62 3g06_A SSPH2 (leucine-rich rep 99.8 7.8E-21 2.7E-25 203.9 11.9 271 121-495 40-310 (622)
63 1ogq_A PGIP-2, polygalacturona 99.8 6.9E-24 2.4E-28 210.0 -11.8 228 216-483 51-282 (313)
64 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-21 5.9E-26 202.7 4.3 283 117-484 38-333 (457)
65 2z66_A Variable lymphocyte rec 99.8 4.9E-23 1.7E-27 203.3 -7.8 266 155-468 9-276 (306)
66 3oja_A Leucine-rich immune mol 99.8 2.7E-22 9.2E-27 210.7 -2.7 235 183-477 35-270 (487)
67 4g8a_A TOLL-like receptor 4; l 99.8 1E-22 3.4E-27 221.3 -7.0 128 353-498 467-597 (635)
68 1io0_A Tropomodulin; LRR prote 99.8 4.7E-19 1.6E-23 160.9 17.4 150 344-497 25-177 (185)
69 4fcg_A Uncharacterized protein 99.8 1.8E-22 6.3E-27 201.1 -5.9 235 182-483 81-315 (328)
70 3zyj_A Leucine-rich repeat-con 99.8 8.6E-22 2.9E-26 204.6 -3.3 238 216-494 65-305 (440)
71 3zyi_A Leucine-rich repeat-con 99.8 1.1E-21 3.9E-26 204.3 -2.6 227 216-483 76-304 (452)
72 3oja_A Leucine-rich immune mol 99.8 2E-21 6.7E-26 204.1 -1.0 220 215-485 34-253 (487)
73 1ozn_A Reticulon 4 receptor; N 99.8 3.6E-21 1.2E-25 187.8 0.6 182 271-482 56-238 (285)
74 3zyi_A Leucine-rich repeat-con 99.8 5.4E-22 1.8E-26 206.9 -5.9 227 182-454 75-303 (452)
75 4fcg_A Uncharacterized protein 99.8 1.1E-21 3.9E-26 195.3 -3.7 227 153-423 81-312 (328)
76 3zyj_A Leucine-rich repeat-con 99.8 4.8E-22 1.6E-26 206.5 -7.0 228 182-454 64-292 (440)
77 4glp_A Monocyte differentiatio 99.8 5.6E-21 1.9E-25 188.9 0.5 241 153-426 64-308 (310)
78 1ozn_A Reticulon 4 receptor; N 99.8 3.5E-21 1.2E-25 187.9 -1.1 205 216-454 33-238 (285)
79 1io0_A Tropomodulin; LRR prote 99.8 1.8E-18 6E-23 157.1 15.3 148 318-469 27-177 (185)
80 1jl5_A Outer protein YOPM; leu 99.8 4.3E-19 1.5E-23 184.5 9.5 155 272-483 216-371 (454)
81 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-18 6E-23 185.7 13.9 264 121-481 61-327 (622)
82 1h6u_A Internalin H; cell adhe 99.8 8.3E-19 2.8E-23 173.0 9.8 151 295-483 81-231 (308)
83 1wwl_A Monocyte differentiatio 99.8 4E-20 1.4E-24 182.9 0.1 266 153-456 43-311 (312)
84 1pgv_A TMD-1, tropomodulin TMD 99.8 1.7E-17 5.9E-22 149.3 16.1 151 345-499 31-185 (197)
85 4g8a_A TOLL-like receptor 4; l 99.8 5E-21 1.7E-25 207.9 -8.5 138 119-285 50-187 (635)
86 1jl5_A Outer protein YOPM; leu 99.8 6.1E-19 2.1E-23 183.3 7.6 260 121-483 91-351 (454)
87 2z62_A TOLL-like receptor 4, v 99.8 7.6E-20 2.6E-24 177.6 0.6 198 271-496 52-253 (276)
88 1h6u_A Internalin H; cell adhe 99.7 4.6E-18 1.6E-22 167.7 10.3 190 216-455 42-231 (308)
89 1p9a_G Platelet glycoprotein I 99.7 6.1E-19 2.1E-23 172.3 0.8 189 272-494 32-221 (290)
90 2z62_A TOLL-like receptor 4, v 99.7 5.9E-19 2E-23 171.2 -1.6 210 216-456 29-239 (276)
91 1p9a_G Platelet glycoprotein I 99.7 3.8E-19 1.3E-23 173.8 -3.3 159 297-479 75-234 (290)
92 2o6q_A Variable lymphocyte rec 99.7 1.5E-18 5.2E-23 167.8 -0.1 192 272-494 38-232 (270)
93 3rfs_A Internalin B, repeat mo 99.7 9E-19 3.1E-23 169.6 -2.1 129 216-368 42-170 (272)
94 3rfs_A Internalin B, repeat mo 99.7 9.9E-19 3.4E-23 169.3 -1.9 178 243-454 41-218 (272)
95 1pgv_A TMD-1, tropomodulin TMD 99.7 3.4E-16 1.2E-20 140.9 14.0 146 319-468 33-182 (197)
96 2o6q_A Variable lymphocyte rec 99.7 2.2E-18 7.4E-23 166.7 -3.8 137 297-455 83-219 (270)
97 1h6t_A Internalin B; cell adhe 99.6 1.1E-16 3.8E-21 156.4 7.2 152 296-485 65-216 (291)
98 4ezg_A Putative uncharacterize 99.6 5E-17 1.7E-21 149.2 3.9 151 299-483 44-195 (197)
99 3m19_A Variable lymphocyte rec 99.6 2E-17 6.8E-22 158.1 0.9 194 272-498 15-210 (251)
100 1h6t_A Internalin B; cell adhe 99.6 1.8E-16 6.1E-21 154.9 5.9 123 216-368 47-169 (291)
101 4ezg_A Putative uncharacterize 99.6 5.8E-16 2E-20 142.1 5.9 151 271-455 44-195 (197)
102 3cvr_A Invasion plasmid antige 99.6 2.9E-16 1E-20 166.5 2.8 193 215-463 59-252 (571)
103 1m9s_A Internalin B; cell inva 99.6 1.2E-15 4.2E-20 163.4 7.1 170 243-456 43-212 (605)
104 2xwt_C Thyrotropin receptor; s 99.6 2.4E-17 8.1E-22 156.3 -6.8 153 295-479 76-236 (239)
105 1m9s_A Internalin B; cell inva 99.6 9.3E-16 3.2E-20 164.3 4.7 189 184-426 23-211 (605)
106 2ra8_A Uncharacterized protein 99.6 7.4E-15 2.5E-19 147.0 10.8 135 354-493 192-331 (362)
107 2ra8_A Uncharacterized protein 99.5 1.4E-14 4.8E-19 145.0 10.9 221 243-480 107-341 (362)
108 3cvr_A Invasion plasmid antige 99.5 3.5E-15 1.2E-19 158.2 6.5 193 182-433 59-251 (571)
109 3m19_A Variable lymphocyte rec 99.5 2.3E-16 8E-21 150.6 -2.3 63 384-455 131-193 (251)
110 2xwt_C Thyrotropin receptor; s 99.5 3.3E-16 1.1E-20 148.3 -3.3 179 271-483 31-219 (239)
111 1xeu_A Internalin C; cellular 99.5 6.5E-15 2.2E-19 141.5 2.9 14 243-256 41-54 (263)
112 1xeu_A Internalin C; cellular 99.5 5.3E-15 1.8E-19 142.1 1.8 80 183-285 20-99 (263)
113 3e6j_A Variable lymphocyte rec 99.5 4.4E-15 1.5E-19 139.6 0.0 173 301-503 21-195 (229)
114 2xot_A Amphoterin-induced prot 99.4 5.3E-15 1.8E-19 149.1 -1.5 140 325-483 62-203 (361)
115 1dce_A Protein (RAB geranylger 99.4 4.3E-15 1.5E-19 158.2 -4.8 125 300-448 442-567 (567)
116 4b8c_D Glucose-repressible alc 99.4 1.7E-14 5.8E-19 158.3 -2.3 152 237-422 218-369 (727)
117 2v9t_B SLIT homolog 2 protein 99.4 2.1E-14 7.3E-19 134.0 -1.8 147 328-496 33-180 (220)
118 2o6s_A Variable lymphocyte rec 99.4 1.2E-14 4E-19 134.5 -3.7 13 272-284 29-41 (208)
119 1dce_A Protein (RAB geranylger 99.4 1.4E-15 4.9E-20 161.8 -11.4 215 215-476 349-567 (567)
120 4b8c_D Glucose-repressible alc 99.4 3.3E-14 1.1E-18 156.0 -1.1 183 265-482 218-404 (727)
121 2v70_A SLIT-2, SLIT homolog 2 99.4 2.3E-14 7.9E-19 133.8 -2.5 126 351-494 53-179 (220)
122 2xot_A Amphoterin-induced prot 99.4 3.5E-14 1.2E-18 143.1 -1.9 157 216-397 40-202 (361)
123 2o6s_A Variable lymphocyte rec 99.4 1.3E-14 4.5E-19 134.2 -4.7 109 243-368 28-137 (208)
124 2v9t_B SLIT homolog 2 protein 99.3 4.8E-14 1.6E-18 131.6 -1.3 135 299-455 32-166 (220)
125 2ell_A Acidic leucine-rich nuc 99.3 1.6E-13 5.3E-18 122.3 1.6 137 327-482 24-160 (168)
126 2v70_A SLIT-2, SLIT homolog 2 99.3 6.4E-14 2.2E-18 130.8 -1.6 134 300-454 33-166 (220)
127 2je0_A Acidic leucine-rich nuc 99.3 5.6E-13 1.9E-17 116.1 3.9 111 351-477 38-148 (149)
128 3e6j_A Variable lymphocyte rec 99.3 1.6E-13 5.3E-18 129.0 0.3 131 216-368 41-172 (229)
129 2je0_A Acidic leucine-rich nuc 99.3 7.4E-13 2.5E-17 115.3 3.8 132 299-449 17-148 (149)
130 2ell_A Acidic leucine-rich nuc 99.3 6.7E-13 2.3E-17 118.2 2.5 139 298-455 23-161 (168)
131 1ds9_A Outer arm dynein; leuci 99.3 1.4E-13 4.8E-18 126.2 -2.8 165 296-484 15-187 (198)
132 1a9n_A U2A', U2A'; complex (nu 99.3 4.4E-13 1.5E-17 120.4 0.1 61 297-369 17-78 (176)
133 4ay9_X Follicle-stimulating ho 99.2 2.2E-14 7.6E-19 143.9 -11.0 105 156-284 12-117 (350)
134 1ds9_A Outer arm dynein; leuci 99.2 1.8E-13 6.2E-18 125.5 -5.6 13 412-424 140-152 (198)
135 4ay9_X Follicle-stimulating ho 99.2 2E-14 7E-19 144.2 -13.1 219 216-478 31-255 (350)
136 1a9n_A U2A', U2A'; complex (nu 99.2 4.2E-12 1.4E-16 113.9 1.8 137 325-483 17-154 (176)
137 1w8a_A SLIT protein; signaling 99.1 2.4E-12 8.2E-17 117.3 -2.6 139 330-493 11-151 (192)
138 1w8a_A SLIT protein; signaling 99.1 5.4E-12 1.9E-16 114.9 -1.7 16 439-454 124-139 (192)
139 3sb4_A Hypothetical leucine ri 99.1 7.9E-12 2.7E-16 124.1 -1.4 251 182-485 25-313 (329)
140 3sb4_A Hypothetical leucine ri 99.1 2E-12 6.7E-17 128.5 -6.2 221 215-476 101-328 (329)
141 2o6r_A Variable lymphocyte rec 99.1 1.9E-11 6.4E-16 109.7 0.6 144 329-497 9-154 (177)
142 2wfh_A SLIT homolog 2 protein 99.1 1.6E-11 5.4E-16 111.9 0.2 18 323-340 50-67 (193)
143 2wfh_A SLIT homolog 2 protein 99.0 1.9E-11 6.4E-16 111.4 -0.5 140 330-495 13-153 (193)
144 3e4g_A ATP synthase subunit S, 99.0 1.6E-10 5.5E-15 101.9 4.4 104 384-496 61-169 (176)
145 2o6r_A Variable lymphocyte rec 99.0 8.6E-11 2.9E-15 105.4 0.6 14 326-339 51-64 (177)
146 3e4g_A ATP synthase subunit S, 98.9 2.1E-09 7.2E-14 94.7 5.6 92 356-457 62-156 (176)
147 3g39_A Variable lymphocyte rec 98.8 3.7E-10 1.3E-14 100.5 -0.1 103 384-500 30-135 (170)
148 2r9u_A Variable lymphocyte rec 98.8 8E-10 2.7E-14 98.7 -0.2 103 384-500 33-138 (174)
149 3g39_A Variable lymphocyte rec 98.7 2.2E-09 7.6E-14 95.4 2.4 42 323-368 50-91 (170)
150 2r9u_A Variable lymphocyte rec 98.6 5.8E-09 2E-13 93.1 1.7 18 323-340 53-70 (174)
151 4fdw_A Leucine rich hypothetic 98.6 1.2E-09 4E-14 111.1 -5.3 17 350-366 266-282 (401)
152 4fdw_A Leucine rich hypothetic 98.6 1.2E-09 4E-14 111.1 -5.5 242 182-483 113-359 (401)
153 2ifg_A High affinity nerve gro 98.3 5.4E-08 1.9E-12 97.0 -0.5 104 302-425 11-116 (347)
154 2ifg_A High affinity nerve gro 98.3 2.1E-07 7E-12 92.7 2.2 101 247-368 12-116 (347)
155 3rw6_A Nuclear RNA export fact 98.1 2E-06 6.7E-11 81.5 5.9 107 360-475 148-257 (267)
156 3rw6_A Nuclear RNA export fact 97.9 1.6E-05 5.6E-10 75.2 6.2 68 296-369 167-234 (267)
157 4fs7_A Uncharacterized protein 96.6 4.3E-05 1.5E-09 77.3 -6.6 128 323-479 249-376 (394)
158 4fs7_A Uncharacterized protein 96.5 2.6E-05 8.7E-10 79.0 -8.7 163 270-474 229-393 (394)
159 4gt6_A Cell surface protein; l 94.6 0.0041 1.4E-07 62.6 -1.4 129 323-480 261-389 (394)
160 4gt6_A Cell surface protein; l 94.0 0.0069 2.4E-07 60.9 -1.0 131 294-453 260-390 (394)
161 3rfe_A Platelet glycoprotein I 89.6 0.13 4.5E-06 42.4 1.9 52 441-496 31-83 (130)
162 4h09_A Hypothetical leucine ri 88.9 0.031 1E-06 55.6 -3.0 131 323-479 213-343 (379)
163 4h09_A Hypothetical leucine ri 88.4 0.074 2.5E-06 52.8 -0.6 156 269-456 192-347 (379)
164 3rfe_A Platelet glycoprotein I 87.8 0.19 6.5E-06 41.5 1.7 36 413-453 32-67 (130)
165 3bbo_G Ribosomal protein L4; l 23.1 24 0.00083 32.9 1.0 13 481-493 247-259 (293)
166 2xze_Q Charged multivesicular 22.4 12 0.00042 23.3 -0.8 11 524-534 27-37 (40)
167 2job_A Antilipopolysaccharide 20.8 50 0.0017 25.1 2.1 41 14-57 50-99 (102)
No 1
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=5.4e-39 Score=336.52 Aligned_cols=378 Identities=21% Similarity=0.288 Sum_probs=333.3
Q ss_pred hhhccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCC
Q 009168 117 KATAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGR 196 (541)
Q Consensus 117 ~~~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~ 196 (541)
....+.+++|+|++|. ++......+...+....+++++|+|++|.++..++..+...+... ++|++|+|++|.+++
T Consensus 52 l~~~~~L~~L~Ls~n~---l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~ 127 (461)
T 1z7x_W 52 LRVNPALAELNLRSNE---LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTL-PTLQELHLSDNLLGD 127 (461)
T ss_dssp HHTCTTCCEEECTTCC---CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSC-TTCCEEECCSSBCHH
T ss_pred HHhCCCcCEEeCCCCc---CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccC-CceeEEECCCCcCch
Confidence 3445789999999987 556677777777766544899999999999998888887777664 499999999999876
Q ss_pred chHHHHHHHHHHHhhhc--CCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcC-CCCCc
Q 009168 197 PEEEALEVINMFSSALE--GSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIP-STEKL 273 (541)
Q Consensus 197 ~~~~~l~~l~~~~~~l~--~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L 273 (541)
.+...+ ...+. .++|++|+|++|.+++.+...++..+..+++|++|+|++|.++..++..+...+. ..++|
T Consensus 128 ~~~~~l------~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 128 AGLQLL------CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp HHHHHH------HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHH------HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCc
Confidence 543332 22221 2579999999999999999999999999999999999999999988888877654 35699
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhh-cCCCcCEEEccCCCCCchHHHHHHHhcc
Q 009168 274 KVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALG-QCTHLKKLDLRDNMFGVEAGVALSEVLP 352 (541)
Q Consensus 274 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 352 (541)
++|++++|.+++.+...++..+..+++|++|++++|.+++.+...++..+. .+++|++|++++|.++..+...++..+.
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988888877665 5899999999999999999999999999
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHH
Q 009168 353 AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILI 432 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 432 (541)
.+++|++|++++|.+++.++..++..+..+.++|+.|++++|.+++.+...+...+..+++|++|+|++|.+++.|+..+
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 361 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 361 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHH
Confidence 99999999999999999999999998877778999999999999999988999999999999999999999999999999
Q ss_pred HHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcCccccccCC
Q 009168 433 GKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDVLGPLD 504 (541)
Q Consensus 433 ~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~l~~l~ 504 (541)
+.++...+++|++|+|++|.|++.|+..++..+..+++|++|++++|+|++.|+..+.+.+++....+..+.
T Consensus 362 ~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence 998873488999999999999999999999999999999999999999999999999999998766665553
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=1.5e-38 Score=325.46 Aligned_cols=281 Identities=22% Similarity=0.302 Sum_probs=249.9
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCC------HHHHHHHHHhcCCCCCccEEEcCCCCCChHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGIS------EEAAQAILELIPSTEKLKVLHFHNNMTGDEGA 288 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 288 (541)
++|++|+|++|.++..++..++..+..+++|++|+|++|.+. ..+...++..+..+++|++|+|++|.++..+.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 578888999999998888888888888999999999987554 34667777778888999999999999999888
Q ss_pred HHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcC---------CCcCEEEccCCCCCchHHHHHHHhcccCCCCCE
Q 009168 289 VAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQC---------THLKKLDLRDNMFGVEAGVALSEVLPAFPDLTE 359 (541)
Q Consensus 289 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 359 (541)
..++..+..+++|++|+|++|.++..+...++..+..+ ++|++|+|++|.++..+...++..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 88999999999999999999999888887888888777 899999999999998888888888999999999
Q ss_pred EEcccCCCChhHHHHHHH-HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 360 VYLSYLNLEDEGAEALAG-ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 360 L~L~~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
|+|++|.+++.+...+.. .+. .+++|+.|+|++|.++..+...+...+..+++|++|+|++|.|++.|+..++.++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~- 269 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS- 269 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH-
T ss_pred EECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh-
Confidence 999999999888777776 443 46999999999999999888888889999999999999999999999999999986
Q ss_pred c--CCCccEEEccCCCCChHHHHHHHHHH-hcCCCccEEEecCCCCChhH--HHHHHHHHhcCc
Q 009168 439 G--HGQLIEIDLSTNSMKRAGARLLAQVA-VNKPGLKMLNINGNFIPDEG--IDEVKEILKHSL 497 (541)
Q Consensus 439 ~--~~~L~~L~Ls~n~i~~~~~~~l~~~l-~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~~ 497 (541)
. +++|++|+|++|.|+..|+..++..+ .++++|++|+|++|++++.+ +..+.+.+++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 4 89999999999999999999999988 56899999999999999988 799999988754
No 3
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.7e-37 Score=325.21 Aligned_cols=369 Identities=20% Similarity=0.222 Sum_probs=221.1
Q ss_pred hhhccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCC
Q 009168 117 KATAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGR 196 (541)
Q Consensus 117 ~~~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~ 196 (541)
....+.++.|+|++|. ++......+...+... ++|++|+|++|.++..+...+...+....++|++|+|++|.++.
T Consensus 24 ~~~~~~L~~L~L~~~~---l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 99 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCG---LTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 99 (461)
T ss_dssp HHHHTTCSEEEEESSC---CCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred HhhcCCccEEEccCCC---CCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence 3444556666666665 2333333333333333 56666666666665544444433322211246666666666555
Q ss_pred chHHHHHHHHHHHhhh-cCCCeeEEEcCCCCCChhHHHHHHHHhhc-CCCccEEEecCCCCCHHHHHHHHHhcCCCCCcc
Q 009168 197 PEEEALEVINMFSSAL-EGSQLRYLNLSHNALGEKGVRAFGALLKS-QNNLEELHLMNDGISEEAAQAILELIPSTEKLK 274 (541)
Q Consensus 197 ~~~~~l~~l~~~~~~l-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 274 (541)
.+...+ ...+ ..++|++|+|++|.+++.++..++..+.. .++|++|+|++|.++..++..+...+..+++|+
T Consensus 100 ~~~~~l------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 100 AGCGVL------SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp GGHHHH------HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHH------HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence 432211 1112 22466666666666666666655554432 345666666666666655555555555556666
Q ss_pred EEEcCCCCCChHHHHHHHHHhh-cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcc-
Q 009168 275 VLHFHNNMTGDEGAVAISEIVK-HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLP- 352 (541)
Q Consensus 275 ~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~- 352 (541)
+|++++|.+++.+...++..+. ..++|++|++++|.++..+...++..+..+++|++|++++|.+++.+...+...+.
T Consensus 174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~ 253 (461)
T 1z7x_W 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence 6666666666666555555444 24466666666666666666666666666666666666666666665555554433
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhC-CCccEEEccCCCCChhHHHH
Q 009168 353 AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALK-QFLTKLNLAENELQDEGAIL 431 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~~ 431 (541)
.+++|++|++++|.+++.+...++..+.. +++|++|++++|.+++.++..++..+..+ ++|++|+|++|.+++.++..
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 332 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRA-KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH 332 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHH-CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhh-CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH
Confidence 35666667776666666665555555544 36677777777766666666666655443 46777777777777666666
Q ss_pred HHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhc-CCCccEEEecCCCCChhHHHHHHHHHhcCc
Q 009168 432 IGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVN-KPGLKMLNINGNFIPDEGIDEVKEILKHSL 497 (541)
Q Consensus 432 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~ 497 (541)
++..+. .+++|++|+|++|.|++.++..++..+.. +++|++|+|++|.|++.|+..+...+...+
T Consensus 333 l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 333 FSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp HHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred HHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 666666 67777777777777777777777666654 567777777777777777777777766543
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=100.00 E-value=2.3e-36 Score=309.12 Aligned_cols=315 Identities=21% Similarity=0.277 Sum_probs=217.3
Q ss_pred EEeccCCCcccc--cHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHH
Q 009168 125 VFDISGGQRGFI--EEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEAL 202 (541)
Q Consensus 125 ~ldls~~~~~~~--~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l 202 (541)
.+++++..+++. +..++..+...+... ++|++|+|++|.++..++..++..+... ++|++|+|++|.++......
T Consensus 3 ~~s~~~~~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~~~~~~l~~~~- 79 (386)
T 2ca6_A 3 RFSIEGKSLKLDAITTEDEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASK-KDLEIAEFSDIFTGRVKDEI- 79 (386)
T ss_dssp EEECTTCCCEESSCCSHHHHTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTC-TTCCEEECCSCCTTSCGGGS-
T ss_pred eEEecCcccccCCCCHHHHHHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhC-CCccEEeCcccccCccccch-
Confidence 456666665544 666777766666655 6677777777777766666655554442 36666666665544332211
Q ss_pred HHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCC
Q 009168 203 EVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNM 282 (541)
Q Consensus 203 ~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 282 (541)
..+...++..+..+++|++|+|++|.++..+...+...+..+++|++|+|++|.
T Consensus 80 --------------------------~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 80 --------------------------PEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp --------------------------HHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred --------------------------hHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 123334444445555555555555555554444444444444555555555555
Q ss_pred CChHHHHHHHHHhhcC---------CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH-hcc
Q 009168 283 TGDEGAVAISEIVKHS---------PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSE-VLP 352 (541)
Q Consensus 283 l~~~~~~~l~~~l~~~---------~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~ 352 (541)
+++.+...++..+..+ ++|++|++++|+++..+...++..+..+++|++|+|++|.++..+...+.. .+.
T Consensus 134 l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 5555544455554444 778888888888877777777777788888888888888888777766666 788
Q ss_pred cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhh--CCCccEEEccCCCCChhHHH
Q 009168 353 AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIAL--KQFLTKLNLAENELQDEGAI 430 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~l~~~g~~ 430 (541)
.+++|+.|+|++|.+++.+...++..+.. +++|++|+|++|.|++.++..++..+.. +++|++|+|++|.+++.|+.
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 88888888888888887777777766554 5889999999999988888888888765 88999999999999999999
Q ss_pred HHHHHhhhcCCCccEEEccCCCCChHH--HHHHHHHHhcCC
Q 009168 431 LIGKSLEEGHGQLIEIDLSTNSMKRAG--ARLLAQVAVNKP 469 (541)
Q Consensus 431 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~~ 469 (541)
.++..+...+++|++|+|++|.|+..+ +..+...+...+
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 999988536899999999999999887 466766665444
No 5
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.98 E-value=4.7e-32 Score=274.59 Aligned_cols=280 Identities=16% Similarity=0.224 Sum_probs=227.4
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCC-CccEEEecCCCCCHHHHHHHHHhcCCC-CCccEEEcCCCCCChHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQN-NLEELHLMNDGISEEAAQAILELIPST-EKLKVLHFHNNMTGDEGAVAIS 292 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~ 292 (541)
++|++|+|++|.+++.+...++..+..++ +|++|+|++|.++..++..+..++..+ ++|++|+|++|.+++.+...+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 35888888888888888877777887777 788888888888887777787777665 7888888888888877777777
Q ss_pred HHhhcC-CCccEEEecCCCCChhHHHHHHHHhhc-CCCcCEEEccCCCCCchHHHHHHHhcccCC-CCCEEEcccCCCCh
Q 009168 293 EIVKHS-PALEDFRCSSTRIGAEGGIALAKALGQ-CTHLKKLDLRDNMFGVEAGVALSEVLPAFP-DLTEVYLSYLNLED 369 (541)
Q Consensus 293 ~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~ 369 (541)
..+..+ ++|++|++++|+++..+...+...+.. +++|++|+|++|.+++.+...++..+..++ +|++|+|++|.+++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 777777 788888888888888877777777777 468888888888888877777888877776 88889998888888
Q ss_pred hHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhh-CCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEc
Q 009168 370 EGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIAL-KQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDL 448 (541)
Q Consensus 370 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~L 448 (541)
.++..++.++....++|++|+|++|.|++.+...++..+.. +++|++|+|++|.|++.|+..++..+. .+++|++|+|
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~-~l~~L~~L~L 260 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD-SLKHLQTVYL 260 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT-TTTTCSEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh-cCCCccEEEe
Confidence 88888887777653588999999998888887778777777 458999999999988888888776666 7888999999
Q ss_pred cCCC---CChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 449 STNS---MKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 449 s~n~---i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
++|. ++..++..++..+..+++|+.|++++|++.+.+...+...+.+
T Consensus 261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~~l~~ 310 (362)
T 3goz_A 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRE 310 (362)
T ss_dssp EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHHHHHH
T ss_pred ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHHHHHH
Confidence 9887 7777778888888888888899999999888876666666654
No 6
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.97 E-value=1.6e-30 Score=263.32 Aligned_cols=297 Identities=16% Similarity=0.178 Sum_probs=235.2
Q ss_pred EEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhh-cCC-CeeEEEcCCCCCChhHHHHH
Q 009168 158 ICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSAL-EGS-QLRYLNLSHNALGEKGVRAF 235 (541)
Q Consensus 158 L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l-~~~-~L~~L~Ls~n~l~~~~~~~l 235 (541)
+.++.|.++.... .++ ....+|++|+|++|.++..+...+. ..+ ..+ +|++|+|++|.+++.++..+
T Consensus 3 ~~ls~n~~~~~~~----~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 71 (362)
T 3goz_A 3 YKLTLHPGSNPVE----EFT-SIPHGVTSLDLSLNNLYSISTVELI------QAFANTPASVTSLNLSGNSLGFKNSDEL 71 (362)
T ss_dssp EECCCCTTCCHHH----HHH-TSCTTCCEEECTTSCGGGSCHHHHH------HHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred cccccccchHHHH----HHH-hCCCCceEEEccCCCCChHHHHHHH------HHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence 4566666664222 221 1224588888888877776542221 112 224 78888888888888888888
Q ss_pred HHHhhcC-CCccEEEecCCCCCHHHHHHHHHhcCCC-CCccEEEcCCCCCChHHHHHHHHHhhc-CCCccEEEecCCCCC
Q 009168 236 GALLKSQ-NNLEELHLMNDGISEEAAQAILELIPST-EKLKVLHFHNNMTGDEGAVAISEIVKH-SPALEDFRCSSTRIG 312 (541)
Q Consensus 236 ~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~ 312 (541)
+.++... ++|++|+|++|.+++..+..++..+..+ ++|++|+|++|.+++.+...+...+.. +++|++|+|++|.++
T Consensus 72 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 72 VQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 8888776 7889999999988887778888877777 789999999998888887778777777 468999999999998
Q ss_pred hhHHHHHHHHhhcCC-CcCEEEccCCCCCchHHHHHHHhcccCC-CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEE
Q 009168 313 AEGGIALAKALGQCT-HLKKLDLRDNMFGVEAGVALSEVLPAFP-DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLD 390 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~ 390 (541)
+.+...++..+...+ +|++|+|++|.++..+...+...+..++ +|++|+|++|.+++.+...++..+...+++|++|+
T Consensus 152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~ 231 (362)
T 3goz_A 152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence 888888888888776 8999999999998888888888888884 89999999999988888888887777556899999
Q ss_pred ecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC---CChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHh
Q 009168 391 LAGNDITAKAASSLAACIALKQFLTKLNLAENE---LQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAV 466 (541)
Q Consensus 391 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 466 (541)
|++|.+++.++..+..++..+++|++|+|++|. ++..++..+...+. .+++|++||+++|.|.+.+...++..+.
T Consensus 232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~-~l~~L~~LdL~~N~l~~~~~~~~~~~l~ 309 (362)
T 3goz_A 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP-NIQKIILVDKNGKEIHPSHSIPISNLIR 309 (362)
T ss_dssp CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST-TCCEEEEECTTSCBCCGGGCHHHHHHHH
T ss_pred CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc-cCCceEEEecCCCcCCCcchHHHHHHHH
Confidence 999999988888888877888899999999997 77788888888888 8889999999999999887776766654
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=3.6e-25 Score=238.89 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=129.1
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEec-----------CCC
Q 009168 242 QNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCS-----------STR 310 (541)
Q Consensus 242 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~ 310 (541)
+++|++|+|++|.++.... ...+..+++|++|+++ +.+.+.+. ......+++|++|+++ .+.
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~-~~~~~~~l---~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDH---CTLIQKCPNLEVLETR-NVIGDRGL---EVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGCCEEEETTCCCCHHHH---HHHHTTCTTCCEEEEE-GGGHHHHH---HHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred cCCCcEEecCCCcCCHHHH---HHHHHhCcCCCEEecc-CccCHHHH---HHHHHhCCCCCEEEeecCccccccccccCc
Confidence 3444445555444443322 1223344555555554 33333222 2223345556666666 245
Q ss_pred CChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcc----cCCCChh----HHHHHHHHHhhc
Q 009168 311 IGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS----YLNLEDE----GAEALAGALKEC 382 (541)
Q Consensus 311 i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~----~n~l~~~----~~~~l~~~l~~~ 382 (541)
++..+... ....+++|++|+++.|.+++.+...+.. .+++|+.|+++ .|.+++. +...+.. .
T Consensus 365 ~~~~~~~~---l~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~----~ 434 (592)
T 3ogk_B 365 VSQRGLIA---LAQGCQELEYMAVYVSDITNESLESIGT---YLKNLCDFRLVLLDREERITDLPLDNGVRSLLI----G 434 (592)
T ss_dssp CCHHHHHH---HHHHCTTCSEEEEEESCCCHHHHHHHHH---HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH----H
T ss_pred cCHHHHHH---HHhhCccCeEEEeecCCccHHHHHHHHh---hCCCCcEEEEeecCCCccccCchHHHHHHHHHH----h
Confidence 55544332 2334566666666666666554333322 25566666664 4455542 2332222 2
Q ss_pred CCCccEEEecCCC--CCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHH
Q 009168 383 APSLEVLDLAGND--ITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARL 460 (541)
Q Consensus 383 ~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 460 (541)
+++|+.|++++|. +++.+...+. ..+++|++|+|++|.+++.++..+.. .+++|++|+|++|.|++.++..
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIG---QYSPNVRWMLLGYVGESDEGLMEFSR----GCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHH---HSCTTCCEEEECSCCSSHHHHHHHHT----CCTTCCEEEEESCCCBHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHH---HhCccceEeeccCCCCCHHHHHHHHh----cCcccCeeeccCCCCcHHHHHH
Confidence 5777777776543 6666555443 33577888888888888766555433 6788888888888887766444
Q ss_pred HHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 461 LAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 461 l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
+ +..+++|++|+|++|++++.|+..+.+.++.
T Consensus 508 ~---~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 508 A---VTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp H---HHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred H---HHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 3 3467888888888888888887777766544
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=1.3e-24 Score=234.53 Aligned_cols=340 Identities=14% Similarity=0.184 Sum_probs=223.1
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCC-CCchHHHHHHHHHHHhccCccEEEcCCCcCCCc
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKS-FGLGASRVAAPILRLIKDQLTEVDLSDFIAGRP 197 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~ 197 (541)
..+.++.|+|+++. ++......+...+ + .+|++|+|++|. +...+. ..+...+ ++|++|+|++|.+.+.
T Consensus 110 ~~~~L~~L~L~~~~---i~~~~~~~l~~~~--~-~~L~~L~L~~~~~~~~~~l---~~~~~~~-~~L~~L~L~~~~~~~~ 179 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI---VSDLDLDRLAKAR--A-DDLETLKLDKCSGFTTDGL---LSIVTHC-RKIKTLLMEESSFSEK 179 (592)
T ss_dssp HCTTCCEEEEESCB---CCHHHHHHHHHHH--G-GGCCEEEEESCEEEEHHHH---HHHHHHC-TTCSEEECTTCEEECC
T ss_pred hCCCCCeEEeeccE---ecHHHHHHHHHhc--c-ccCcEEECcCCCCcCHHHH---HHHHhhC-CCCCEEECccccccCc
Confidence 55678888888774 4444444443332 0 237788887775 333222 2222222 5788888888776555
Q ss_pred hHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHH--------------
Q 009168 198 EEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAI-------------- 263 (541)
Q Consensus 198 ~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------- 263 (541)
+...+..+. ...++|++|+|++|.++......+...+..+++|++|+|++|.+.+.. ..+
T Consensus 180 ~~~~l~~~~-----~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 180 DGKWLHELA-----QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSL 253 (592)
T ss_dssp CSHHHHHHH-----HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBC
T ss_pred chhHHHHHH-----hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhccccc
Confidence 433222211 122578888888887764444456666667777888888777654421 111
Q ss_pred --------------------------------HHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCC
Q 009168 264 --------------------------------LELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRI 311 (541)
Q Consensus 264 --------------------------------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 311 (541)
...+..+++|++|+|++|.+++.+ +...+..+++|++|+++ +.+
T Consensus 254 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~---~~~~~~~~~~L~~L~L~-~~~ 329 (592)
T 3ogk_B 254 NEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETED---HCTLIQKCPNLEVLETR-NVI 329 (592)
T ss_dssp CCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHH---HHHHHTTCTTCCEEEEE-GGG
T ss_pred ccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHH---HHHHHHhCcCCCEEecc-Ccc
Confidence 112233457777777777766654 23445667778888877 455
Q ss_pred ChhHHHHHHHHhhcCCCcCEEEcc-----------CCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHh
Q 009168 312 GAEGGIALAKALGQCTHLKKLDLR-----------DNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALK 380 (541)
Q Consensus 312 ~~~~~~~l~~~l~~~~~L~~L~L~-----------~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 380 (541)
++.+ +...+..+++|++|+|+ .|.++..+...+ ...+++|++|+++.|.+++.++..++..
T Consensus 330 ~~~~---l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~l~~~~~~~l~~~-- 401 (592)
T 3ogk_B 330 GDRG---LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL---AQGCQELEYMAVYVSDITNESLESIGTY-- 401 (592)
T ss_dssp HHHH---HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH---HHHCTTCSEEEEEESCCCHHHHHHHHHH--
T ss_pred CHHH---HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH---HhhCccCeEEEeecCCccHHHHHHHHhh--
Confidence 5444 33344567888888888 356776654333 3457888889988888888777776653
Q ss_pred hcCCCccEEEec----CCCCCHHHH-HHHHHHHhhCCCccEEEccCCC--CChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 381 ECAPSLEVLDLA----GNDITAKAA-SSLAACIALKQFLTKLNLAENE--LQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 381 ~~~~~L~~L~L~----~n~l~~~~~-~~l~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
+++|+.|+++ .|.+++... ..+...+..+++|++|+|++|. +++.++..++. .+++|++|+|++|.+
T Consensus 402 --~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----~~~~L~~L~L~~n~l 475 (592)
T 3ogk_B 402 --LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----YSPNVRWMLLGYVGE 475 (592)
T ss_dssp --CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----SCTTCCEEEECSCCS
T ss_pred --CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----hCccceEeeccCCCC
Confidence 6889999996 667775211 1233345567999999998654 88888777664 689999999999999
Q ss_pred ChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 454 KRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 454 ~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
++.++ ...+..+++|++|+|++|++++.++..+...++.
T Consensus 476 ~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 476 SDEGL---MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514 (592)
T ss_dssp SHHHH---HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS
T ss_pred CHHHH---HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc
Confidence 99764 4455688999999999999999999888776553
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7e-25 Score=236.74 Aligned_cols=227 Identities=16% Similarity=0.173 Sum_probs=151.8
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEe---------cCCCCC
Q 009168 242 QNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRC---------SSTRIG 312 (541)
Q Consensus 242 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L---------~~n~i~ 312 (541)
+++|++|+|++|.+++.. +..++..+++|++|++++| +++.+.. .....+++|++|++ ..+.++
T Consensus 288 ~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~~L~l~~~-~~~~~l~---~l~~~~~~L~~L~L~~~~~~g~~~~~~l~ 360 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYD---LVKLLCQCPKLQRLWVLDY-IEDAGLE---VLASTCKDLRELRVFPSEPFVMEPNVALT 360 (594)
T ss_dssp HTTCCEEECTTCCCCHHH---HHHHHTTCTTCCEEEEEGG-GHHHHHH---HHHHHCTTCCEEEEECSCTTCSSCSSCCC
T ss_pred hCCCCEEEccCCCCCHHH---HHHHHhcCCCcCEEeCcCc-cCHHHHH---HHHHhCCCCCEEEEecCcccccccCCCCC
Confidence 355666666666655432 3333445566666666665 4433322 22334666777776 334566
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcc--c----CCCC----hhHHHHHHHHHhhc
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS--Y----LNLE----DEGAEALAGALKEC 382 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~----n~l~----~~~~~~l~~~l~~~ 382 (541)
+.+...+. ..+++|++|.+..|.+++.+...+. ..+++|+.|+++ + +.++ +.+...+.. .
T Consensus 361 ~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~----~ 430 (594)
T 2p1m_B 361 EQGLVSVS---MGCPKLESVLYFCRQMTNAALITIA---RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVE----H 430 (594)
T ss_dssp HHHHHHHH---HHCTTCCEEEEEESCCCHHHHHHHH---HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHH----H
T ss_pred HHHHHHHH---HhchhHHHHHHhcCCcCHHHHHHHH---hhCCCcceeEeecccCCCcccccCCchhhHHHHHHh----h
Confidence 55543322 3466777777777777765543333 246778888887 3 4566 344444432 3
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 383 APSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
+++|+.|++++ .+++.++..++. .+++|+.|+|++|.+++.|+..++. .+++|++|+|++|.+++.++..+
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~---~~~~L~~L~L~~~~i~~~~~~~l~~----~~~~L~~L~L~~n~~~~~~~~~~- 501 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGT---YAKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKLEIRDCPFGDKALLAN- 501 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHH---HCTTCCEEEEESCCSSHHHHHHHHH----HCTTCCEEEEESCSCCHHHHHHT-
T ss_pred CCCccEEeecC-cccHHHHHHHHH---hchhccEeeccCCCCcHHHHHHHHh----cCCCcCEEECcCCCCcHHHHHHH-
Confidence 68888888877 788777666654 3588999999999999988877654 68999999999999988764433
Q ss_pred HHHhcCCCccEEEecCCCCChhHHHHHHHHHhcC
Q 009168 463 QVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHS 496 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~ 496 (541)
+..+++|++|++++|+++++|++.+...+++-
T Consensus 502 --~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 502 --ASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp --GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred --HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 45678999999999999999999987766544
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.93 E-value=5.2e-28 Score=252.62 Aligned_cols=328 Identities=18% Similarity=0.174 Sum_probs=223.7
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCch-HHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLG-ASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
.+.+++|||++|.+..+.. ..+... .+|++|+|++|.+... ....+... ++|++|+|++|.+....
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~-------~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l-----~~L~~L~Ls~n~l~~~~ 95 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNE-------TSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGL-----SSLIILKLDYNQFLQLE 95 (455)
T ss_dssp CTTCCEEECCSSCCCEECT-------TTTSSC-TTCCEEECCCCSTTCEECTTTTTTC-----TTCCEEECTTCTTCEEC
T ss_pred CCccCEEEecCCccCcCCh-------hHhccC-ccccEEECcCCcccceECccccccc-----ccCCEEeCCCCccCccC
Confidence 3678999999988643322 222222 7888999998876421 11122222 58889999988877654
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
+..+..+ ++|++|+|++|.++...+.. ..+..+++|++|+|++|.++...+.. ++..+++|++|++
T Consensus 96 ~~~~~~l---------~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L 161 (455)
T 3v47_A 96 TGAFNGL---------ANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPAS---FFLNMRRFHVLDL 161 (455)
T ss_dssp TTTTTTC---------TTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCG---GGGGCTTCCEEEC
T ss_pred hhhccCc---------ccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCccc---ccCCCCcccEEeC
Confidence 4333222 48888888888887532221 22566688888888888876542221 1345578888888
Q ss_pred CCCCCChHHHHHHHH------------------------------HhhcCCCccEEEecCCCCChhHHHHHHHHhh----
Q 009168 279 HNNMTGDEGAVAISE------------------------------IVKHSPALEDFRCSSTRIGAEGGIALAKALG---- 324 (541)
Q Consensus 279 s~n~l~~~~~~~l~~------------------------------~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~---- 324 (541)
++|.+.......+.. .+..+++|++|++++|+++......+...+.
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 888765422111111 1223467888888888887654443333211
Q ss_pred -------------------------------cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 325 -------------------------------QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 325 -------------------------------~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
..++|+.|++++|.++.. .+..+..+++|+.|++++|.+++..+.
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL----LKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc----chhhcccCCCCCEEECCCCcccccChh
Confidence 125788888888888764 366788899999999999999876555
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
.+.. +++|+.|+|++|.+++..+.. +..+++|++|+|++|.++... +.++. .+++|++|+|++|.|
T Consensus 318 ~~~~-----l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 318 AFWG-----LTHLLKLNLSQNFLGSIDSRM----FENLDKLEVLDLSYNHIRALG----DQSFL-GLPNLKELALDTNQL 383 (455)
T ss_dssp TTTT-----CTTCCEEECCSSCCCEECGGG----GTTCTTCCEEECCSSCCCEEC----TTTTT-TCTTCCEEECCSSCC
T ss_pred HhcC-----cccCCEEECCCCccCCcChhH----hcCcccCCEEECCCCcccccC----hhhcc-ccccccEEECCCCcc
Confidence 5543 689999999999998765443 445699999999999998643 33445 799999999999999
Q ss_pred ChHHHHHHHHHHhcCCCccEEEecCCCCChhH--HHHHHHHHhcC
Q 009168 454 KRAGARLLAQVAVNKPGLKMLNINGNFIPDEG--IDEVKEILKHS 496 (541)
Q Consensus 454 ~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~ 496 (541)
+.. ....+..+++|++|+|++|+++... +..+...+...
T Consensus 384 ~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~ 424 (455)
T 3v47_A 384 KSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 424 (455)
T ss_dssp SCC----CTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred ccC----CHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhC
Confidence 985 3345678899999999999998754 55665655544
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=3.7e-25 Score=222.50 Aligned_cols=283 Identities=17% Similarity=0.150 Sum_probs=143.4
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchH
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEE 199 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~ 199 (541)
.+.++.++++++.+..+. .+... +++++|++++|.+..... +.. .++|++|+|++|.+...+.
T Consensus 43 l~~L~~L~l~~~~i~~~~---------~~~~~-~~L~~L~l~~n~i~~~~~------~~~-l~~L~~L~L~~n~i~~~~~ 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ---------GIEYL-TNLEYLNLNGNQITDISP------LSN-LVKLTNLYIGTNKITDISA 105 (347)
T ss_dssp HTTCSEEECCSSCCCCCT---------TGGGC-TTCCEEECCSSCCCCCGG------GTT-CTTCCEEECCSSCCCCCGG
T ss_pred cccccEEEEeCCccccch---------hhhhc-CCccEEEccCCccccchh------hhc-CCcCCEEEccCCcccCchH
Confidence 445666666666543221 12222 566666666666554322 111 1466666666666655421
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcC
Q 009168 200 EALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFH 279 (541)
Q Consensus 200 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 279 (541)
+ -..++|++|++++|.++.... +..+++|++|++++|...... ..+..+++|++|+++
T Consensus 106 --~---------~~l~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 106 --L---------QNLTNLRELYLNEDNISDISP------LANLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVT 163 (347)
T ss_dssp --G---------TTCTTCSEEECTTSCCCCCGG------GTTCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECC
T ss_pred --H---------cCCCcCCEEECcCCcccCchh------hccCCceeEEECCCCCCcccc-----cchhhCCCCcEEEec
Confidence 1 112466666666666654321 445566666666666322211 113444566666666
Q ss_pred CCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCE
Q 009168 280 NNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTE 359 (541)
Q Consensus 280 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 359 (541)
+|.+... +. +..+++|++|++++|.+.... . +..+++|+.|++++|.++... .+..+++|++
T Consensus 164 ~~~~~~~-----~~-~~~l~~L~~L~l~~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~ 225 (347)
T 4fmz_A 164 ESKVKDV-----TP-IANLTDLYSLSLNYNQIEDIS-----P-LASLTSLHYFTAYVNQITDIT------PVANMTRLNS 225 (347)
T ss_dssp SSCCCCC-----GG-GGGCTTCSEEECTTSCCCCCG-----G-GGGCTTCCEEECCSSCCCCCG------GGGGCTTCCE
T ss_pred CCCcCCc-----hh-hccCCCCCEEEccCCcccccc-----c-ccCCCccceeecccCCCCCCc------hhhcCCcCCE
Confidence 6655542 11 455566666666666655421 1 445556666666666555421 1445555666
Q ss_pred EEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhc
Q 009168 360 VYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEG 439 (541)
Q Consensus 360 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 439 (541)
|++++|.+++..+ + ..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+. .
T Consensus 226 L~l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~~~-~ 285 (347)
T 4fmz_A 226 LKIGNNKITDLSP--L-----ANLSQLTWLEIGTNQISDI------NAVKDLTKLKMLNVGSNQISDI------SVLN-N 285 (347)
T ss_dssp EECCSSCCCCCGG--G-----TTCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSCCCCC------GGGG-G
T ss_pred EEccCCccCCCcc--h-----hcCCCCCEEECCCCccCCC------hhHhcCCCcCEEEccCCccCCC------hhhc-C
Confidence 6666665554322 1 1245566666666655542 1233445566666666655542 1233 4
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 440 HGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 440 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+++|++|++++|.++.. .+..+..+++|++|++++|++++
T Consensus 286 l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNE----DMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CTTCSEEECCSSCCCGG----GHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCCEEECcCCcCCCc----ChhHhhccccCCEEEccCCcccc
Confidence 55566666666655554 23334455556666666665554
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=8.2e-25 Score=220.02 Aligned_cols=286 Identities=19% Similarity=0.196 Sum_probs=223.6
Q ss_pred hhhccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCC
Q 009168 117 KATAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGR 196 (541)
Q Consensus 117 ~~~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~ 196 (541)
....+.+++|++++|.+..+.. +... ++|++|++++|.+.... . +..+ ++|++|+|++|.+..
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~---------~~~l-~~L~~L~L~~n~i~~~~--~----~~~l-~~L~~L~l~~n~i~~ 124 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP---------LSNL-VKLTNLYIGTNKITDIS--A----LQNL-TNLRELYLNEDNISD 124 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG---------GTTC-TTCCEEECCSSCCCCCG--G----GTTC-TTCSEEECTTSCCCC
T ss_pred hhhcCCccEEEccCCccccchh---------hhcC-CcCCEEEccCCcccCch--H----HcCC-CcCCEEECcCCcccC
Confidence 4567899999999998654332 3333 89999999999987632 1 2221 699999999999988
Q ss_pred chHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEE
Q 009168 197 PEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVL 276 (541)
Q Consensus 197 ~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 276 (541)
.+. +. ..++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|++|
T Consensus 125 ~~~--~~---------~l~~L~~L~l~~n~~~~~~-----~~~~~l~~L~~L~l~~~~~~~~~~------~~~l~~L~~L 182 (347)
T 4fmz_A 125 ISP--LA---------NLTKMYSLNLGANHNLSDL-----SPLSNMTGLNYLTVTESKVKDVTP------IANLTDLYSL 182 (347)
T ss_dssp CGG--GT---------TCTTCCEEECTTCTTCCCC-----GGGTTCTTCCEEECCSSCCCCCGG------GGGCTTCSEE
T ss_pred chh--hc---------cCCceeEEECCCCCCcccc-----cchhhCCCCcEEEecCCCcCCchh------hccCCCCCEE
Confidence 753 11 2369999999999443321 226778999999999999876532 4567999999
Q ss_pred EcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCC
Q 009168 277 HFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPD 356 (541)
Q Consensus 277 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 356 (541)
++++|.+.. ++. +..+++|+.|++++|.+..... +..+++|++|++++|.++.. +. +..+++
T Consensus 183 ~l~~n~l~~-----~~~-~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~~~-----~~-~~~l~~ 244 (347)
T 4fmz_A 183 SLNYNQIED-----ISP-LASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKITDL-----SP-LANLSQ 244 (347)
T ss_dssp ECTTSCCCC-----CGG-GGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCCCC-----GG-GTTCTT
T ss_pred EccCCcccc-----ccc-ccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccCCC-----cc-hhcCCC
Confidence 999999987 333 7789999999999999986532 78899999999999999874 22 788999
Q ss_pred CCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHh
Q 009168 357 LTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSL 436 (541)
Q Consensus 357 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l 436 (541)
|++|++++|.+++. ..+ ..+++|+.|++++|.+++.. .+..+++|++|+|++|.+++..+..+
T Consensus 245 L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l---- 307 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAV-----KDLTKLKMLNVGSNQISDIS------VLNNLSQLNSLFLNNNQLGNEDMEVI---- 307 (347)
T ss_dssp CCEEECCSSCCCCC--GGG-----TTCTTCCEEECCSSCCCCCG------GGGGCTTCSEEECCSSCCCGGGHHHH----
T ss_pred CCEEECCCCccCCC--hhH-----hcCCCcCEEEccCCccCCCh------hhcCCCCCCEEECcCCcCCCcChhHh----
Confidence 99999999999864 222 23689999999999998752 35667999999999999998665444
Q ss_pred hhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 437 EEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 437 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
. .+++|++|++++|.++.. .+ +..+++|++|++++|+|+.
T Consensus 308 ~-~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 308 G-GLTNLTTLFLSQNHITDI----RP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp H-TCTTCSEEECCSSSCCCC----GG--GGGCTTCSEESSSCC----
T ss_pred h-ccccCCEEEccCCccccc----cC--hhhhhccceeehhhhcccC
Confidence 3 799999999999999985 22 7789999999999999863
No 13
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.9e-24 Score=228.47 Aligned_cols=333 Identities=15% Similarity=0.169 Sum_probs=223.9
Q ss_pred hhhccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCC-CCCchHHHHHHHHHHHhccCccEEEcCCCcCC
Q 009168 117 KATAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNK-SFGLGASRVAAPILRLIKDQLTEVDLSDFIAG 195 (541)
Q Consensus 117 ~~~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~ 195 (541)
....+.++.|+|+++. ++......+...+ ++|++|+|++| .++..+...+ ...+ ++|++|+|++|.++
T Consensus 101 ~~~~~~L~~L~L~~~~---~~~~~~~~l~~~~----~~L~~L~L~~~~~~~~~~l~~~---~~~~-~~L~~L~L~~~~i~ 169 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMV---VTDDCLELIAKSF----KNFKVLVLSSCEGFSTDGLAAI---AATC-RNLKELDLRESDVD 169 (594)
T ss_dssp HHHCTTCCEEEEESCB---CCHHHHHHHHHHC----TTCCEEEEESCEEEEHHHHHHH---HHHC-TTCCEEECTTCEEE
T ss_pred HHhCCCCCeEEeeCcE---EcHHHHHHHHHhC----CCCcEEeCCCcCCCCHHHHHHH---HHhC-CCCCEEeCcCCccC
Confidence 3456788999999886 4555555554444 68999999988 6665443332 2222 58899999888766
Q ss_pred CchHHHHHHHHHHHhhh-cCCCeeEEEcCCCC--CChhHHHHHHHHhhcCCCccEEEecCCC-CC---------------
Q 009168 196 RPEEEALEVINMFSSAL-EGSQLRYLNLSHNA--LGEKGVRAFGALLKSQNNLEELHLMNDG-IS--------------- 256 (541)
Q Consensus 196 ~~~~~~l~~l~~~~~~l-~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~--------------- 256 (541)
+.+...+.. .. ..++|++|+|++|. ++... +..++..+++|++|+|++|. +.
T Consensus 170 ~~~~~~l~~------~~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 170 DVSGHWLSH------FPDTYTSLVSLNISCLASEVSFSA---LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp CCCGGGGGG------SCTTCCCCCEEECTTCCSCCCHHH---HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred CcchHHHHH------HhhcCCcCcEEEecccCCcCCHHH---HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 544322211 11 22467777777775 44333 33334446667777776662 11
Q ss_pred ----------HHHHHHHH------------------------HhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCcc
Q 009168 257 ----------EEAAQAIL------------------------ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALE 302 (541)
Q Consensus 257 ----------~~~~~~l~------------------------~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~ 302 (541)
......+. ..+..+++|++|++++|.+++.+ +...+..+++|+
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~---l~~~~~~~~~L~ 317 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD---LVKLLCQCPKLQ 317 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH---HHHHHTTCTTCC
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH---HHHHHhcCCCcC
Confidence 11111111 01113467888888888877654 344566788899
Q ss_pred EEEecCCCCChhHHHHHHHHhhcCCCcCEEEc---------cCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 303 DFRCSSTRIGAEGGIALAKALGQCTHLKKLDL---------RDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 303 ~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L---------~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
+|++++| +++.+. ......+++|++|++ ..+.+++.+...+. ..+++|+.|.++.|.+++.++.
T Consensus 318 ~L~l~~~-~~~~~l---~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~---~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 318 RLWVLDY-IEDAGL---EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS---MGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp EEEEEGG-GHHHHH---HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH---HHCTTCCEEEEEESCCCHHHHH
T ss_pred EEeCcCc-cCHHHH---HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH---HhchhHHHHHHhcCCcCHHHHH
Confidence 9999888 555443 333446888999988 33567776644443 3468899998888999987777
Q ss_pred HHHHHHhhcCCCccEEEec--C----CCCC----HHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCc
Q 009168 374 ALAGALKECAPSLEVLDLA--G----NDIT----AKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQL 443 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~--~----n~l~----~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L 443 (541)
.++.. +++|+.|+++ + +.++ +.+ +...+..+++|+.|+|++ .+++.++..++. .+++|
T Consensus 391 ~l~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~---~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----~~~~L 458 (594)
T 2p1m_B 391 TIARN----RPNMTRFRLCIIEPKAPDYLTLEPLDIG---FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----YAKKM 458 (594)
T ss_dssp HHHHH----CTTCCEEEEEESSTTCCCTTTCCCTHHH---HHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----HCTTC
T ss_pred HHHhh----CCCcceeEeecccCCCcccccCCchhhH---HHHHHhhCCCccEEeecC-cccHHHHHHHHH----hchhc
Confidence 76543 6899999999 4 5676 333 334466679999999988 899888877765 58899
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHh
Q 009168 444 IEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILK 494 (541)
Q Consensus 444 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~ 494 (541)
++|+|++|.+++.++..++ ..+++|+.|+|++|++++.++..+...++
T Consensus 459 ~~L~L~~~~i~~~~~~~l~---~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVL---SGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp CEEEEESCCSSHHHHHHHH---HHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred cEeeccCCCCcHHHHHHHH---hcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 9999999999998876654 45899999999999999998887766554
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.1e-27 Score=249.62 Aligned_cols=305 Identities=14% Similarity=0.083 Sum_probs=231.3
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
..+.++.|||++|.+..+.. ..+... ++|++|+|++|.+.......+..+ ++|++|+|++|.+...+
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~-------~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~ 96 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQ-------DEFASF-PHLEELELNENIVSAVEPGAFNNL-----FNLRTLGLRSNRLKLIP 96 (477)
T ss_dssp CCTTCSEEECCSSCCCEECT-------TTTTTC-TTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCSCC
T ss_pred CCCCCcEEECCCCccceECH-------hHccCC-CCCCEEECCCCccCEeChhhhhCC-----ccCCEEECCCCcCCccC
Confidence 34678999999998754432 122222 899999999999886543333332 68999999999988776
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
...+.. .++|++|+|++|.++.... ..+..+++|++|+|++|.+..... ..+..+++|++|++
T Consensus 97 ~~~~~~---------l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l 159 (477)
T 2id5_A 97 LGVFTG---------LSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDLVYISH----RAFSGLNSLEQLTL 159 (477)
T ss_dssp TTSSTT---------CTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCTTCCEECT----TSSTTCTTCCEEEE
T ss_pred cccccC---------CCCCCEEECCCCccccCCh----hHccccccCCEEECCCCccceeCh----hhccCCCCCCEEEC
Confidence 433322 2599999999999986433 335677999999999999876433 23456789999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++|.++.. .+..+..+++|+.|++++|.+.... ...+..+++|+.|++++|.+... ++..+....+|+
T Consensus 160 ~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~ 227 (477)
T 2id5_A 160 EKCNLTSI----PTEALSHLHGLIVLRLRHLNINAIR----DYSFKRLYRLKVLEISHWPYLDT----MTPNCLYGLNLT 227 (477)
T ss_dssp ESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEEC----TTCSCSCTTCCEEEEECCTTCCE----ECTTTTTTCCCS
T ss_pred CCCcCccc----ChhHhcccCCCcEEeCCCCcCcEeC----hhhcccCcccceeeCCCCccccc----cCcccccCcccc
Confidence 99998863 2345788999999999999998642 23577889999999999886543 244444556999
Q ss_pred EEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 359 EVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 359 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
.|++++|.++......+. .+++|+.|+|++|.++...+.. +..+++|+.|+|++|.++... +.++.
T Consensus 228 ~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~----~~~~~- 293 (477)
T 2id5_A 228 SLSITHCNLTAVPYLAVR-----HLVYLRFLNLSYNPISTIEGSM----LHELLRLQEIQLVGGQLAVVE----PYAFR- 293 (477)
T ss_dssp EEEEESSCCCSCCHHHHT-----TCTTCCEEECCSSCCCEECTTS----CTTCTTCCEEECCSSCCSEEC----TTTBT-
T ss_pred EEECcCCcccccCHHHhc-----CccccCeeECCCCcCCccChhh----ccccccCCEEECCCCccceEC----HHHhc-
Confidence 999999999865544443 3699999999999998765433 445689999999999998643 33445
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
.+++|++|+|++|.|+.. ....+..+++|+.|+|++|++..
T Consensus 294 ~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTL----EESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECCSSCCSCC----CGGGBSCGGGCCEEECCSSCEEC
T ss_pred CcccCCEEECCCCcCcee----CHhHcCCCcccCEEEccCCCccC
Confidence 799999999999999985 33456778999999999999874
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.4e-27 Score=263.30 Aligned_cols=235 Identities=22% Similarity=0.219 Sum_probs=143.6
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+|++|+|++|.++... +..+..+++|+.|+|++|.+.+..+. .+..+++|++|++++|.+... ++..+
T Consensus 419 ~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~----~p~~l 486 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTI----PSSLGSLSKLRDLKLWLNMLEGEIPQ----ELMYVKTLETLILDFNDLTGE----IPSGL 486 (768)
T ss_dssp TCCEEECCSSEEESCC----CGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCCSC----CCGGG
T ss_pred CCCEEECcCCcccCcc----cHHHhcCCCCCEEECCCCcccCcCCH----HHcCCCCceEEEecCCcccCc----CCHHH
Confidence 4445555555443221 12233445555555555555432222 223345666666666665531 34455
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEAL 375 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 375 (541)
..+++|++|++++|+++.. ++..+..+++|+.|+|++|.++.. ++..+..+++|+.|++++|.+++..+..+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGN----IPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred hcCCCCCEEEccCCccCCc----CChHHhcCCCCCEEECCCCcccCc----CCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 6666677777777666543 445566667777777777776543 35566667777777777776654333322
Q ss_pred HHHH-----------------------------------------------------------------hhcCCCccEEE
Q 009168 376 AGAL-----------------------------------------------------------------KECAPSLEVLD 390 (541)
Q Consensus 376 ~~~l-----------------------------------------------------------------~~~~~~L~~L~ 390 (541)
.... ...+++|+.|+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld 638 (768)
T 3rgz_A 559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638 (768)
T ss_dssp GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence 1100 00135677888
Q ss_pred ecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCC
Q 009168 391 LAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPG 470 (541)
Q Consensus 391 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 470 (541)
|++|.+++..+..+ ..++.|+.|+|++|.++. .++..+. .+++|+.|||++|+++.. ++..+..++.
T Consensus 639 Ls~N~l~g~ip~~l----~~l~~L~~L~Ls~N~l~g----~ip~~l~-~L~~L~~LdLs~N~l~g~----ip~~l~~l~~ 705 (768)
T 3rgz_A 639 MSYNMLSGYIPKEI----GSMPYLFILNLGHNDISG----SIPDEVG-DLRGLNILDLSSNKLDGR----IPQAMSALTM 705 (768)
T ss_dssp CCSSCCBSCCCGGG----GGCTTCCEEECCSSCCCS----CCCGGGG-GCTTCCEEECCSSCCEEC----CCGGGGGCCC
T ss_pred CcCCcccccCCHHH----hccccCCEEeCcCCccCC----CCChHHh-CCCCCCEEECCCCcccCc----CChHHhCCCC
Confidence 88888877665543 444888888888888875 3455566 788888888888888876 7777788888
Q ss_pred ccEEEecCCCCCh
Q 009168 471 LKMLNINGNFIPD 483 (541)
Q Consensus 471 L~~L~L~~N~i~~ 483 (541)
|++|+|++|+++.
T Consensus 706 L~~L~ls~N~l~g 718 (768)
T 3rgz_A 706 LTEIDLSNNNLSG 718 (768)
T ss_dssp CSEEECCSSEEEE
T ss_pred CCEEECcCCcccc
Confidence 8888888887653
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-26 Score=234.14 Aligned_cols=162 Identities=22% Similarity=0.198 Sum_probs=122.1
Q ss_pred CCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH
Q 009168 298 SPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG 377 (541)
Q Consensus 298 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 377 (541)
.++|++|++++|.+.... ....++|+.|++++|.++. ...+..+++|++|++++|.+++..+..+..
T Consensus 204 ~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVR-------GPVNVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp CSSCSEEECCSSCCCEEE-------CCCCSSCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred CCcceEEECCCCeeeecc-------ccccccccEEECCCCCCcc------cHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 345666666666665431 1234689999999999887 356788999999999999998765555543
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHH
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAG 457 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 457 (541)
+++|+.|++++|.+++... .+..+++|++|+|++|.++. ++..+. .+++|++|++++|.|+...
T Consensus 271 -----l~~L~~L~L~~n~l~~~~~-----~~~~l~~L~~L~L~~n~l~~-----~~~~~~-~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 271 -----MQRLERLYISNNRLVALNL-----YGQPIPTLKVLDLSHNHLLH-----VERNQP-QFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp -----CSSCCEEECCSSCCCEEEC-----SSSCCTTCCEEECCSSCCCC-----CGGGHH-HHTTCSEEECCSSCCCCCC
T ss_pred -----cccCCEEECCCCcCcccCc-----ccCCCCCCCEEECCCCccee-----cCcccc-ccCcCCEEECCCCccceeC
Confidence 6899999999999986421 12446899999999999984 333344 6889999999999998852
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 458 ARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 458 ~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
+..+++|+.|++++|+++.+....+...+.+
T Consensus 335 -------~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 335 -------LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp -------CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred -------chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 5678999999999999999877666554443
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.2e-27 Score=265.76 Aligned_cols=317 Identities=19% Similarity=0.199 Sum_probs=243.2
Q ss_pred HHhhhccCCcEEeccCCCcc-cccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCc
Q 009168 115 AEKATAASQTVFDISGGQRG-FIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFI 193 (541)
Q Consensus 115 ~~~~~~~~l~~ldls~~~~~-~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 193 (541)
......+.++.|+|++|.+. .+... .+..+ ++|++|++++|.+.......+... ..+|++|+|++|.
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~----~l~~l----~~L~~L~Ls~n~l~~~~p~~l~~l----~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMD----TLLKM----RGLKVLDLSFNEFSGELPESLTNL----SASLLTLDLSSNN 379 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHH----HHTTC----TTCCEEECCSSEEEECCCTTHHHH----TTTCSEEECCSSE
T ss_pred hHHhcCCCccEEECCCCcccCcCCHH----HHhcC----CCCCEEeCcCCccCccccHHHHhh----hcCCcEEEccCCC
Confidence 34556788999999999864 33331 12223 799999999998764333333333 2489999999997
Q ss_pred CCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCc
Q 009168 194 AGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKL 273 (541)
Q Consensus 194 ~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 273 (541)
+.......+.. ...++|++|++++|.++.. ++..+..+++|++|+|++|.+++..+. .+..+++|
T Consensus 380 l~~~~~~~~~~-------~~~~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L 444 (768)
T 3rgz_A 380 FSGPILPNLCQ-------NPKNTLQELYLQNNGFTGK----IPPTLSNCSELVSLHLSFNYLSGTIPS----SLGSLSKL 444 (768)
T ss_dssp EEEECCTTTTC-------STTCCCCEEECCSSEEEEE----CCGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTC
T ss_pred cCCCcChhhhh-------cccCCccEEECCCCccccc----cCHHHhcCCCCCEEECcCCcccCcccH----HHhcCCCC
Confidence 75432111100 0025899999999998754 334567789999999999988764333 34556899
Q ss_pred cEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhccc
Q 009168 274 KVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPA 353 (541)
Q Consensus 274 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 353 (541)
+.|++++|.+... ++..+..+++|++|++++|+++.. ++..+..+++|+.|+|++|.+++. ++..+..
T Consensus 445 ~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~----~p~~~~~ 512 (768)
T 3rgz_A 445 RDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGE----IPSGLSNCTNLNWISLSNNRLTGE----IPKWIGR 512 (768)
T ss_dssp CEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGGCTTCCEEECCSSCCCSC----CCGGGGG
T ss_pred CEEECCCCcccCc----CCHHHcCCCCceEEEecCCcccCc----CCHHHhcCCCCCEEEccCCccCCc----CChHHhc
Confidence 9999999998852 567788899999999999999864 566788999999999999999864 4778889
Q ss_pred CCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHH--------------------------
Q 009168 354 FPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAAC-------------------------- 407 (541)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-------------------------- 407 (541)
+++|+.|+|++|.+++..+..+.. +++|+.|++++|.+++..+..+...
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~-----l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGD-----CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGG-----CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred CCCCCEEECCCCcccCcCCHHHcC-----CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 999999999999998776666654 6999999999998875544433221
Q ss_pred ----------------------------------------HhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEE
Q 009168 408 ----------------------------------------IALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEID 447 (541)
Q Consensus 408 ----------------------------------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~ 447 (541)
+..+++|+.|+|++|.++. .++..+. .++.|+.|+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g----~ip~~l~-~l~~L~~L~ 662 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG----YIPKEIG-SMPYLFILN 662 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS----CCCGGGG-GCTTCCEEE
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc----cCCHHHh-ccccCCEEe
Confidence 1223679999999999986 3455666 899999999
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh
Q 009168 448 LSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 448 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 484 (541)
|++|.++.. ++..+..+++|+.|||++|+++..
T Consensus 663 Ls~N~l~g~----ip~~l~~L~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 663 LGHNDISGS----IPDEVGDLRGLNILDLSSNKLDGR 695 (768)
T ss_dssp CCSSCCCSC----CCGGGGGCTTCCEEECCSSCCEEC
T ss_pred CcCCccCCC----CChHHhCCCCCCEEECCCCcccCc
Confidence 999999987 888899999999999999999864
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.1e-25 Score=227.07 Aligned_cols=274 Identities=18% Similarity=0.200 Sum_probs=206.7
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
++|++|+|++|.++..+...+..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.++.....
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRC---------VNLQALVLTSNGINTIEE----DSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTC---------TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred ccCcEEECCCCcCcccCHHHhccC---------CCCCEEECCCCccCccCH----hhcCCCCCCCEEECCCCcCCcCCHh
Confidence 577788888777776543333222 588999999998876432 2355668899999999988764333
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHH--HhhcCCCccEEEecCC-CCChhHHHHHHHHhhcCCCcCEEEccCCC
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISE--IVKHSPALEDFRCSST-RIGAEGGIALAKALGQCTHLKKLDLRDNM 338 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~ 338 (541)
. +..+++|++|++++|.+.. ++. .+..+++|++|++++| .++.. .+..+..+++|++|++++|.
T Consensus 119 ~----~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 119 W----FKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDTFTKI----QRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp H----HTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSSCCEE----CTTTTTTCCEEEEEEEEETT
T ss_pred H----hCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCcccccc----CHHHccCCCCCCEEECCCCC
Confidence 2 3456899999999998875 444 5678899999999998 46543 23457788999999999999
Q ss_pred CCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEE
Q 009168 339 FGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLN 418 (541)
Q Consensus 339 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 418 (541)
++.. .+..+..+++|++|++++|.++... ..+.. .+++|+.|++++|.+++.....+.. ...+..++.++
T Consensus 186 l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~~----~~~~L~~L~L~~n~l~~~~~~~l~~-~~~~~~l~~l~ 255 (353)
T 2z80_A 186 LQSY----EPKSLKSIQNVSHLILHMKQHILLL-EIFVD----VTSSVECLELRDTDLDTFHFSELST-GETNSLIKKFT 255 (353)
T ss_dssp CCEE----CTTTTTTCSEEEEEEEECSCSTTHH-HHHHH----HTTTEEEEEEESCBCTTCCCC-------CCCCCCEEE
T ss_pred cCcc----CHHHHhccccCCeecCCCCccccch-hhhhh----hcccccEEECCCCcccccccccccc-ccccchhhccc
Confidence 8874 3667888999999999999997533 32222 2689999999999998755444332 34467899999
Q ss_pred ccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHH-HhcCCCccEEEecCCCCChh--HHHHHHHHHhc
Q 009168 419 LAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQV-AVNKPGLKMLNINGNFIPDE--GIDEVKEILKH 495 (541)
Q Consensus 419 Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~-l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~ 495 (541)
|+++.+++.+...++..+. .+++|++|++++|.|+. ++.. +..+++|++|+|++|++..+ .+..+...+.+
T Consensus 256 L~~~~l~~~~l~~l~~~l~-~l~~L~~L~Ls~N~l~~-----i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLN-QISGLLELEFSRNQLKS-----VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp EESCBCCHHHHHHHHHHHH-TCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred cccccccCcchhhhHHHHh-cccCCCEEECCCCCCCc-----cCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 9999999999999999998 99999999999999996 4444 47889999999999999875 46666666665
Q ss_pred Cc
Q 009168 496 SL 497 (541)
Q Consensus 496 ~~ 497 (541)
..
T Consensus 330 ~~ 331 (353)
T 2z80_A 330 NS 331 (353)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=2.5e-26 Score=239.82 Aligned_cols=306 Identities=17% Similarity=0.127 Sum_probs=207.7
Q ss_pred cEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCC-CchHHHH
Q 009168 124 TVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAG-RPEEEAL 202 (541)
Q Consensus 124 ~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~-~~~~~~l 202 (541)
+.++.+++++..+.. ..+++++|+|++|.+.......+..+ ++|++|+|++|.+. ..+...+
T Consensus 13 ~~~~c~~~~l~~lp~------------l~~~l~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~L~~n~~~~~i~~~~~ 75 (455)
T 3v47_A 13 YNAICINRGLHQVPE------------LPAHVNYVDLSLNSIAELNETSFSRL-----QDLQFLKVEQQTPGLVIRNNTF 75 (455)
T ss_dssp TEEECCSSCCSSCCC------------CCTTCCEEECCSSCCCEECTTTTSSC-----TTCCEEECCCCSTTCEECTTTT
T ss_pred cccCcCCCCcccCCC------------CCCccCEEEecCCccCcCChhHhccC-----ccccEEECcCCcccceECcccc
Confidence 567777776543321 12689999999999986433333332 69999999999775 3322222
Q ss_pred HHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCC
Q 009168 203 EVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNM 282 (541)
Q Consensus 203 ~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 282 (541)
..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.+++..+.. ..+..+++|++|++++|.
T Consensus 76 ~~l---------~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~ 140 (455)
T 3v47_A 76 RGL---------SSLIILKLDYNQFLQLET----GAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNN 140 (455)
T ss_dssp TTC---------TTCCEEECTTCTTCEECT----TTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSB
T ss_pred ccc---------ccCCEEeCCCCccCccCh----hhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCc
Confidence 222 599999999999986533 34566799999999999998643322 225667999999999999
Q ss_pred CChHHHHHHHH-HhhcCCCccEEEecCCCCChhHHHHHHH------------------------------HhhcCCCcCE
Q 009168 283 TGDEGAVAISE-IVKHSPALEDFRCSSTRIGAEGGIALAK------------------------------ALGQCTHLKK 331 (541)
Q Consensus 283 l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~------------------------------~l~~~~~L~~ 331 (541)
+... .+. .+..+++|++|++++|+++......+.. .+..+++|++
T Consensus 141 l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~ 216 (455)
T 3v47_A 141 IKKI----QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT 216 (455)
T ss_dssp CCSC----CCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred cCcc----CcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence 8862 122 3778999999999999987542211110 0123356777
Q ss_pred EEccCCCCCchHHHHHHHhcc-----------------------------------cCCCCCEEEcccCCCChhHHHHHH
Q 009168 332 LDLRDNMFGVEAGVALSEVLP-----------------------------------AFPDLTEVYLSYLNLEDEGAEALA 376 (541)
Q Consensus 332 L~L~~n~l~~~~~~~l~~~l~-----------------------------------~~~~L~~L~L~~n~l~~~~~~~l~ 376 (541)
|++++|.++......+...+. ..++|+.|++++|.++...+..+.
T Consensus 217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 296 (455)
T 3v47_A 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296 (455)
T ss_dssp EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT
T ss_pred EecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcc
Confidence 888888777655444443311 114677777777777655444333
Q ss_pred HHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 377 GALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 377 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
.+++|+.|++++|.+++..+.. +..+++|++|+|++|.++... +..+. .+++|++|+|++|.|+..
T Consensus 297 -----~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 297 -----HFTDLEQLTLAQNEINKIDDNA----FWGLTHLLKLNLSQNFLGSID----SRMFE-NLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp -----TCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEEC----GGGGT-TCTTCCEEECCSSCCCEE
T ss_pred -----cCCCCCEEECCCCcccccChhH----hcCcccCCEEECCCCccCCcC----hhHhc-CcccCCEEECCCCccccc
Confidence 2578888888888887654433 334478888888888887532 23344 688888888888888775
Q ss_pred HHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 457 GARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 457 ~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
.+..+..+++|++|+|++|+|+.
T Consensus 363 ----~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 363 ----GDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ----ChhhccccccccEEECCCCcccc
Confidence 35566778888888888888875
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.7e-25 Score=237.62 Aligned_cols=172 Identities=16% Similarity=0.171 Sum_probs=102.3
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHH
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALA 376 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 376 (541)
.+++|++|++++|+++.. ++..+..+++|+.|++++|.++.. ..++..+..+++|+.|++++|.+++..+....
T Consensus 322 ~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDT----VFENCGHLTELETLILQMNQLKEL--SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp SCCCCCEEECCSSCCCTT----TTTTCCCCSSCCEEECCSSCCCBH--HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred hCCcccEEEeECCccChh----hhhhhccCCCCCEEEccCCccCcc--ccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 344555555555555432 233345555556666666555531 12344455556666666666655542222110
Q ss_pred HHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 377 GALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 377 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
..+++|+.|++++|.+++..+..+ .++|++|+|++|.|+ .++..+. .+++|++|+|++|+|+.
T Consensus 396 ----~~l~~L~~L~Ls~N~l~~~~~~~l------~~~L~~L~Ls~N~l~-----~ip~~~~-~l~~L~~L~L~~N~l~~- 458 (520)
T 2z7x_B 396 ----SWTKSLLSLNMSSNILTDTIFRCL------PPRIKVLDLHSNKIK-----SIPKQVV-KLEALQELNVASNQLKS- 458 (520)
T ss_dssp ----CCCTTCCEEECCSSCCCGGGGGSC------CTTCCEEECCSSCCC-----CCCGGGG-GCTTCCEEECCSSCCCC-
T ss_pred ----ccCccCCEEECcCCCCCcchhhhh------cccCCEEECCCCccc-----ccchhhh-cCCCCCEEECCCCcCCc-
Confidence 123566666666666654432211 157888888888887 4566666 78999999999999986
Q ss_pred HHHHHHH-HHhcCCCccEEEecCCCCChh-HHHHH-HHHHhc
Q 009168 457 GARLLAQ-VAVNKPGLKMLNINGNFIPDE-GIDEV-KEILKH 495 (541)
Q Consensus 457 ~~~~l~~-~l~~~~~L~~L~L~~N~i~~~-g~~~l-~~~l~~ 495 (541)
++. .+..+++|++|++++|+++.+ .+..+ ...+.+
T Consensus 459 ----l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 459 ----VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 496 (520)
T ss_dssp ----CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred ----cCHHHhccCCcccEEECcCCCCcccCCchHHHHHHHHh
Confidence 433 367789999999999998764 34455 444433
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.1e-25 Score=239.43 Aligned_cols=269 Identities=19% Similarity=0.187 Sum_probs=172.4
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
++|++|+|++|.+.......+..+ ++|++|+|++|.++..+...+..+ ++|++|+|++|.++....
T Consensus 99 ~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~l~~~~~~~l---------~~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 99 HTIQKLYMGFNAIRYLPPHVFQNV-----PLLTVLVLERNDLSSLPRGIFHNT---------PKLTTLSMSNNNLERIED 164 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC-----TTCCEEECCSSCCCCCCTTTTTTC---------TTCCEEECCSSCCCBCCT
T ss_pred CCCCEEECCCCcCCCCCHHHHcCC-----CCCCEEEeeCCCCCCCCHHHhccC---------CCCCEEEeeCCcCCCCCh
Confidence 455666666655543322222211 456666666655554443221111 356666666665554322
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
..+..+++|++|+|++|.+++.. +..+++|+.|++++|.+.. +...++|+.|++++|.++
T Consensus 165 ----~~~~~l~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 165 ----DTFQATTSLQNLQLSSNRLTHVD-------LSLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSIN 224 (597)
T ss_dssp ----TTTTTCTTCCEEECTTSCCSBCC-------GGGCTTCSEEECCSSCCSE---------EECCTTCSEEECCSSCCC
T ss_pred ----hhhhcCCcCcEEECcCCCCCCcC-------hhhhhhhhhhhcccCcccc---------ccCCchhheeeccCCccc
Confidence 12344455666666666555421 1223556666666665543 233456777777777765
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEec
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLA 392 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 392 (541)
.... ...++|+.|+|++|.+++ +..+..+++|+.|+|++|.+++..+..+.. +++|+.|+|+
T Consensus 225 ~~~~-------~~~~~L~~L~L~~n~l~~------~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls 286 (597)
T 3oja_B 225 VVRG-------PVNVELTILKLQHNNLTD------TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-----MQRLERLYIS 286 (597)
T ss_dssp EEEC-------SCCSCCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCEEESGGGTT-----CSSCCEEECT
T ss_pred cccc-------ccCCCCCEEECCCCCCCC------ChhhccCCCCCEEECCCCccCCCCHHHhcC-----ccCCCEEECC
Confidence 4211 123678999999999887 366788999999999999998766655543 6899999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCcc
Q 009168 393 GNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLK 472 (541)
Q Consensus 393 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~ 472 (541)
+|.+++.. ..+..+++|+.|+|++|.++. ++..+. .+++|+.|+|++|.|+... +..+++|+
T Consensus 287 ~N~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~-~l~~L~~L~L~~N~l~~~~-------~~~~~~L~ 348 (597)
T 3oja_B 287 NNRLVALN-----LYGQPIPTLKVLDLSHNHLLH-----VERNQP-QFDRLENLYLDHNSIVTLK-------LSTHHTLK 348 (597)
T ss_dssp TSCCCEEE-----CSSSCCTTCCEEECCSSCCCC-----CGGGHH-HHTTCSEEECCSSCCCCCC-------CCTTCCCS
T ss_pred CCCCCCCC-----cccccCCCCcEEECCCCCCCc-----cCcccc-cCCCCCEEECCCCCCCCcC-------hhhcCCCC
Confidence 99998742 123346899999999999983 344444 6889999999999998742 56778999
Q ss_pred EEEecCCCCChhHHHHHHH
Q 009168 473 MLNINGNFIPDEGIDEVKE 491 (541)
Q Consensus 473 ~L~L~~N~i~~~g~~~l~~ 491 (541)
.|+|++|+++......+..
T Consensus 349 ~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 349 NLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp EEECCSSCEEHHHHHHHTT
T ss_pred EEEeeCCCCCChhHHHHHH
Confidence 9999999998876555543
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=7.4e-24 Score=221.81 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=85.8
Q ss_pred cCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHH
Q 009168 241 SQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALA 320 (541)
Q Consensus 241 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 320 (541)
.+++|++|++++|.++.. ..+..+++|++|++++|.+... .. +..+++|++|++++|+++..
T Consensus 175 ~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~-----~~-~~~l~~L~~L~l~~n~l~~~------ 236 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI------SVLAKLTNLESLIATNNQISDI-----TP-LGILTNLDELSLNGNQLKDI------ 236 (466)
T ss_dssp TCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCC-----GG-GGGCTTCCEEECCSSCCCCC------
T ss_pred cCCCCCEEECcCCcCCCC------hhhccCCCCCEEEecCCccccc-----cc-ccccCCCCEEECCCCCcccc------
Confidence 334455555555544432 1123334555555555544431 11 33444555555555554432
Q ss_pred HHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHH
Q 009168 321 KALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKA 400 (541)
Q Consensus 321 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 400 (541)
..+..+++|+.|++++|.++.. . .+..+++|+.|++++|.+++..+ + ..+++|+.|++++|.+++..
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~-----~-~~~~l~~L~~L~l~~n~l~~~~~--~-----~~l~~L~~L~L~~n~l~~~~ 303 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNL-----A-PLSGLTKLTELKLGANQISNISP--L-----AGLTALTNLELNENQLEDIS 303 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC-----G-GGTTCTTCSEEECCSSCCCCCGG--G-----TTCTTCSEEECCSSCCSCCG
T ss_pred hhhhcCCCCCEEECCCCccccc-----h-hhhcCCCCCEEECCCCccCcccc--c-----cCCCccCeEEcCCCcccCch
Confidence 1234445555555555554432 1 14444555555555555443221 1 11345555555555554432
Q ss_pred HHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 401 ASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 401 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
+ +..+++|+.|+|++|.+++... +. .+++|++|++++|.+++. ..+..+++|+.|++++|+
T Consensus 304 ~------~~~l~~L~~L~L~~n~l~~~~~------~~-~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 304 P------ISNLKNLTYLTLYFNNISDISP------VS-SLTKLQRLFFYNNKVSDV------SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp G------GGGCTTCSEEECCSSCCSCCGG------GG-GCTTCCEEECCSSCCCCC------GGGTTCTTCCEEECCSSC
T ss_pred h------hcCCCCCCEEECcCCcCCCchh------hc-cCccCCEeECCCCccCCc------hhhccCCCCCEEeCCCCc
Confidence 1 3334555555555555543221 22 445555555555555442 123444555555555555
Q ss_pred CCh
Q 009168 481 IPD 483 (541)
Q Consensus 481 i~~ 483 (541)
+++
T Consensus 365 l~~ 367 (466)
T 1o6v_A 365 ISD 367 (466)
T ss_dssp CCB
T ss_pred cCc
Confidence 544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.2e-26 Score=231.15 Aligned_cols=292 Identities=18% Similarity=0.148 Sum_probs=220.6
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
..+.++.++++++.+..+... ++..+ ++|++|+|++|.+.......+... ++|++|+|++|.++..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~----~~~~l----~~L~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYA-----HTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCchhhCChh----Hhccc----ccCcEEECCCCcccccChhhccCC-----CCcCEEECCCCCCCcCC
Confidence 346789999999887666552 23333 789999999998876443333322 68999999999888776
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
+..+..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.++...+ ..+..+++|++|++
T Consensus 110 ~~~~~~l---------~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 110 PHVFQNV---------PLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQL 172 (390)
T ss_dssp TTTTTTC---------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCT----TTTSSCTTCCEEEC
T ss_pred HHHhcCC---------CCCCEEECCCCccCcCCH----HHhcCCCCCcEEECCCCccCccCh----hhccCCCCCCEEEC
Confidence 5433322 589999999999885322 224667899999999998876422 23456789999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++|.++.. .+..+++|+.|++++|.++. +...++|+.|++++|.+... +. ...++|+
T Consensus 173 ~~n~l~~~-------~~~~l~~L~~L~l~~n~l~~---------~~~~~~L~~L~l~~n~l~~~-----~~--~~~~~L~ 229 (390)
T 3o6n_A 173 SSNRLTHV-------DLSLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSINVV-----RG--PVNVELT 229 (390)
T ss_dssp CSSCCSBC-------CGGGCTTCSEEECCSSCCSE---------EECCSSCSEEECCSSCCCEE-----EC--CCCSSCC
T ss_pred CCCcCCcc-------ccccccccceeecccccccc---------cCCCCcceEEECCCCeeeec-----cc--ccccccc
Confidence 99998862 25678899999999999875 24557899999999998863 22 3357899
Q ss_pred EEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 359 EVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 359 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
.|++++|.+++. ..+ ..+++|+.|++++|.+++..+.. +..+++|++|+|++|.++.. +....
T Consensus 230 ~L~l~~n~l~~~--~~l-----~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~-----~~~~~- 292 (390)
T 3o6n_A 230 ILKLQHNNLTDT--AWL-----LNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVAL-----NLYGQ- 292 (390)
T ss_dssp EEECCSSCCCCC--GGG-----GGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECCSSCCCEE-----ECSSS-
T ss_pred EEECCCCCCccc--HHH-----cCCCCccEEECCCCcCCCcChhH----ccccccCCEEECCCCcCccc-----CcccC-
Confidence 999999999864 222 23699999999999999765544 44559999999999999853 22233
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
.+++|++|+|++|.++. ++..+..+++|++|+|++|+|+...
T Consensus 293 ~l~~L~~L~L~~n~l~~-----~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCCCEEECCCCccee-----cCccccccCcCCEEECCCCccceeC
Confidence 68999999999999986 4444567799999999999998753
No 24
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=2.8e-22 Score=202.54 Aligned_cols=188 Identities=22% Similarity=0.233 Sum_probs=104.3
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCC-CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPST-EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAK 321 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 321 (541)
++|++|+|++|.++...+..++..+... ++|++|+|++|.+++.+...+...+. +|++|+|++|.+++.+...++.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 5677777777777777777777666544 47777777777777666555554433 4566666666666655555555
Q ss_pred Hhh-cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHH
Q 009168 322 ALG-QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKA 400 (541)
Q Consensus 322 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 400 (541)
.+. .+++|++|+|++|.|++.++..++.++..+++|++|+|++|.|++.++..++.++..+ ++|+.|+|++|.|++.+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHH
Confidence 553 3455555555555555555555555555555555555555555554444444444432 34555555555554444
Q ss_pred HHHHHHHHhhCCCccEEEccCCCCChhHHHHHHH
Q 009168 401 ASSLAACIALKQFLTKLNLAENELQDEGAILIGK 434 (541)
Q Consensus 401 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 434 (541)
...++..+..+++|++|+|++|.|++.|+..++.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=6.1e-26 Score=238.46 Aligned_cols=299 Identities=17% Similarity=0.112 Sum_probs=229.2
Q ss_pred cEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHH
Q 009168 124 TVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALE 203 (541)
Q Consensus 124 ~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~ 203 (541)
+.++.+++++..+.. .+ ...++.|+|++|.+.......+..+ ++|++|+|++|.+.......+.
T Consensus 14 ~~v~c~~~~l~~ip~--------~~---~~~l~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE--------GI---PTETRLLDLGKNRIKTLNQDEFASF-----PHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp TEEECCSCCCSSCCS--------CC---CTTCSEEECCSSCCCEECTTTTTTC-----TTCCEEECTTSCCCEECTTTTT
T ss_pred CEEEeCCCCcCcCCC--------CC---CCCCcEEECCCCccceECHhHccCC-----CCCCEEECCCCccCEeChhhhh
Confidence 567777777543322 22 2689999999999986543333332 6999999999998876544333
Q ss_pred HHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCC
Q 009168 204 VINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMT 283 (541)
Q Consensus 204 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 283 (541)
.+ ++|++|+|++|.++.... ..+..+++|++|+|++|.+..... ..+..+++|++|++++|.+
T Consensus 78 ~l---------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 78 NL---------FNLRTLGLRSNRLKLIPL----GVFTGLSNLTKLDISENKIVILLD----YMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp TC---------TTCCEEECCSSCCCSCCT----TSSTTCTTCCEEECTTSCCCEECT----TTTTTCTTCCEEEECCTTC
T ss_pred CC---------ccCCEEECCCCcCCccCc----ccccCCCCCCEEECCCCccccCCh----hHccccccCCEEECCCCcc
Confidence 22 599999999999986432 235667999999999999886432 3346679999999999998
Q ss_pred ChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcc
Q 009168 284 GDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS 363 (541)
Q Consensus 284 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 363 (541)
... .+..+..+++|++|++++|+++.. ....+..+++|+.|+|++|.+.... ...+..+++|+.|+++
T Consensus 141 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 141 VYI----SHRAFSGLNSLEQLTLEKCNLTSI----PTEALSHLHGLIVLRLRHLNINAIR----DYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CEE----CTTSSTTCTTCCEEEEESCCCSSC----CHHHHTTCTTCCEEEEESCCCCEEC----TTCSCSCTTCCEEEEE
T ss_pred cee----ChhhccCCCCCCEEECCCCcCccc----ChhHhcccCCCcEEeCCCCcCcEeC----hhhcccCcccceeeCC
Confidence 762 234677899999999999999865 2355789999999999999998742 4567889999999999
Q ss_pred cCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCc
Q 009168 364 YLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQL 443 (541)
Q Consensus 364 ~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L 443 (541)
+|.+....+..+.. ..+|+.|++++|.++...... +..+++|++|+|++|.++.... ..+. .+++|
T Consensus 209 ~~~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~----~~~~-~l~~L 274 (477)
T 2id5_A 209 HWPYLDTMTPNCLY-----GLNLTSLSITHCNLTAVPYLA----VRHLVYLRFLNLSYNPISTIEG----SMLH-ELLRL 274 (477)
T ss_dssp CCTTCCEECTTTTT-----TCCCSEEEEESSCCCSCCHHH----HTTCTTCCEEECCSSCCCEECT----TSCT-TCTTC
T ss_pred CCccccccCccccc-----CccccEEECcCCcccccCHHH----hcCccccCeeECCCCcCCccCh----hhcc-ccccC
Confidence 98766544433322 358999999999999755443 4556999999999999986432 2334 78999
Q ss_pred cEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 444 IEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 444 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
++|+|++|.|+.. .+..+..+++|+.|+|++|.|+.-.
T Consensus 275 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 275 QEIQLVGGQLAVV----EPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp CEEECCSSCCSEE----CTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred CEEECCCCccceE----CHHHhcCcccCCEEECCCCcCceeC
Confidence 9999999999986 4566788999999999999988643
No 26
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.90 E-value=2.2e-22 Score=203.36 Aligned_cols=215 Identities=20% Similarity=0.241 Sum_probs=167.6
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcC-CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHS-PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSE 349 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 349 (541)
+.|+.|+|++|.+++.+...++..+... ++|++|+|++|.+++.+...+...+. +|++|+|++|.+++.++..+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~---~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL---RARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH---TEEEEECCSSCCCHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH---hccHhhcCCCCCCHHHHHHHHH
Confidence 5788999999999888888888877754 68999999999988887766665554 6788888888888888888887
Q ss_pred hcc-cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhH
Q 009168 350 VLP-AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEG 428 (541)
Q Consensus 350 ~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g 428 (541)
.+. .+++|++|+|++|.|++.+...++.++.. +++|++|+|++|.|++.+...++..+..+++|++|+|++|.|++.|
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 774 47788888888888888888888887776 4788888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcC-CCccEEE--ecCCCCChhHHHHHH
Q 009168 429 AILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK-PGLKMLN--INGNFIPDEGIDEVK 490 (541)
Q Consensus 429 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~--L~~N~i~~~g~~~l~ 490 (541)
+..++.++. .+++|++|+|++|.|++.|+..+..+.... ..|+.+. +.+|.++++....+.
T Consensus 228 ~~~l~~~L~-~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~~~~~l~ 291 (372)
T 3un9_A 228 ALALARAAR-EHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILS 291 (372)
T ss_dssp HHHHHHHHH-HCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHHHHHHHH
Confidence 888888888 788888888888888888888887754333 1277887 778888776444333
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=3.5e-23 Score=216.73 Aligned_cols=281 Identities=22% Similarity=0.254 Sum_probs=191.4
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
..+.+++|||++|.+..+.. +... .+|++|++++|.+..... +. . .++|++|+|++|.+...+
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~~---------~~~l-~~L~~L~l~~n~l~~~~~--~~----~-l~~L~~L~L~~n~l~~~~ 128 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDITP---------LKNL-TKLVDILMNNNQIADITP--LA----N-LTNLTGLTLFNNQITDID 128 (466)
T ss_dssp GCTTCCEEECCSSCCCCCGG---------GTTC-TTCCEEECCSSCCCCCGG--GT----T-CTTCCEEECCSSCCCCCG
T ss_pred hhcCCCEEECCCCccCCchh---------hhcc-ccCCEEECCCCccccChh--hc----C-CCCCCEEECCCCCCCCCh
Confidence 34556666666655432211 1111 556666666665553321 11 1 145666666666555543
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
. +. ..++|++|++++|.+.... .+..+++|++|+++++ +... ..+..+++|++|++
T Consensus 129 ~--~~---------~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~~-~~~~------~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 129 P--LK---------NLTNLNRLELSSNTISDIS------ALSGLTSLQQLSFGNQ-VTDL------KPLANLTTLERLDI 184 (466)
T ss_dssp G--GT---------TCTTCSEEEEEEEEECCCG------GGTTCTTCSEEEEEES-CCCC------GGGTTCTTCCEEEC
T ss_pred H--Hc---------CCCCCCEEECCCCccCCCh------hhccCCcccEeecCCc-ccCc------hhhccCCCCCEEEC
Confidence 2 11 1246666666666555421 2455566666666532 2221 11466789999999
Q ss_pred CCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC
Q 009168 279 HNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT 358 (541)
Q Consensus 279 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 358 (541)
++|.+.. + ..+..+++|++|++++|.+.... .+..+++|+.|++++|.++.. ..+..+++|+
T Consensus 185 ~~n~l~~-----~-~~l~~l~~L~~L~l~~n~l~~~~------~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~ 246 (466)
T 1o6v_A 185 SSNKVSD-----I-SVLAKLTNLESLIATNNQISDIT------PLGILTNLDELSLNGNQLKDI------GTLASLTNLT 246 (466)
T ss_dssp CSSCCCC-----C-GGGGGCTTCSEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCC------GGGGGCTTCS
T ss_pred cCCcCCC-----C-hhhccCCCCCEEEecCCcccccc------cccccCCCCEEECCCCCcccc------hhhhcCCCCC
Confidence 9998876 2 24678899999999999987642 167789999999999998873 4577889999
Q ss_pred EEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhh
Q 009168 359 EVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEE 438 (541)
Q Consensus 359 ~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 438 (541)
.|++++|.+++..+ + ..+++|+.|++++|.+++..+ +..+++|+.|+|++|.+++... +.
T Consensus 247 ~L~l~~n~l~~~~~--~-----~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~~~~------~~- 306 (466)
T 1o6v_A 247 DLDLANNQISNLAP--L-----SGLTKLTELKLGANQISNISP------LAGLTALTNLELNENQLEDISP------IS- 306 (466)
T ss_dssp EEECCSSCCCCCGG--G-----TTCTTCSEEECCSSCCCCCGG------GTTCTTCSEEECCSSCCSCCGG------GG-
T ss_pred EEECCCCccccchh--h-----hcCCCCCEEECCCCccCcccc------ccCCCccCeEEcCCCcccCchh------hc-
Confidence 99999999886543 2 236899999999999987543 5566999999999999986432 44
Q ss_pred cCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh
Q 009168 439 GHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~ 484 (541)
.+++|+.|++++|.+++.. + +..+++|+.|++++|++++.
T Consensus 307 ~l~~L~~L~L~~n~l~~~~----~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDIS----P--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp GCTTCSEEECCSSCCSCCG----G--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCEEECcCCcCCCch----h--hccCccCCEeECCCCccCCc
Confidence 7999999999999998852 2 67889999999999999874
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.2e-25 Score=243.33 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHH
Q 009168 268 PSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVAL 347 (541)
Q Consensus 268 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 347 (541)
..+++|++|++++|.++. ++..+..+++|++|++++|++... .+..+..+++|++|++++|.+.... .
T Consensus 275 ~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~---~ 342 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSE-----LPSGLVGLSTLKKLVLSANKFENL----CQISASNFPSLTHLSIKGNTKRLEL---G 342 (606)
T ss_dssp TTCTTCSEEECTTSCCSC-----CCSSCCSCTTCCEEECTTCCCSBG----GGGCGGGCTTCSEEECCSCSSCCBC---C
T ss_pred ccccCCCEEeccCCccCC-----CChhhcccccCCEEECccCCcCcC----chhhhhccCcCCEEECCCCCccccc---c
Confidence 334566666666666654 455555666666666666666543 1233455555666666555543210 0
Q ss_pred HHhcccCCCCCEEEcccCCCCh
Q 009168 348 SEVLPAFPDLTEVYLSYLNLED 369 (541)
Q Consensus 348 ~~~l~~~~~L~~L~L~~n~l~~ 369 (541)
...+..+++|+.|++++|.++.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhhccCcCCEEECCCCcccc
Confidence 1224445555555555555543
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3e-25 Score=239.55 Aligned_cols=291 Identities=18% Similarity=0.152 Sum_probs=219.9
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchH
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEE 199 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~ 199 (541)
.+.++.++++++.+..+... ++..+ +.|+.|+|++|.+.......+..+ ++|++|+|++|.++..++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~----~~~~l----~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAA----LLDSF----RQVELLNLNDLQIEEIDTYAFAYA-----HTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTH----HHHHC----CCCSEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHH----HHccC----CCCcEEECCCCCCCCCChHHhcCC-----CCCCEEECCCCcCCCCCH
Confidence 45678899998887665552 23333 689999999998876443333322 689999999998888765
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcC
Q 009168 200 EALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFH 279 (541)
Q Consensus 200 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 279 (541)
..+..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.+++..+ ..+..+++|++|+++
T Consensus 117 ~~~~~l---------~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 117 HVFQNV---------PLLTVLVLERNDLSSLPR----GIFHNTPKLTTLSMSNNNLERIED----DTFQATTSLQNLQLS 179 (597)
T ss_dssp TTTTTC---------TTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCBCCT----TTTTTCTTCCEEECT
T ss_pred HHHcCC---------CCCCEEEeeCCCCCCCCH----HHhccCCCCCEEEeeCCcCCCCCh----hhhhcCCcCcEEECc
Confidence 433322 589999999999885322 234667899999999999876433 234566899999999
Q ss_pred CCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCE
Q 009168 280 NNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTE 359 (541)
Q Consensus 280 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 359 (541)
+|.+... .+..+++|+.|++++|.++. +...++|+.|++++|.++.. +. ...++|+.
T Consensus 180 ~N~l~~~-------~~~~l~~L~~L~l~~n~l~~---------l~~~~~L~~L~ls~n~l~~~-----~~--~~~~~L~~ 236 (597)
T 3oja_B 180 SNRLTHV-------DLSLIPSLFHANVSYNLLST---------LAIPIAVEELDASHNSINVV-----RG--PVNVELTI 236 (597)
T ss_dssp TSCCSBC-------CGGGCTTCSEEECCSSCCSE---------EECCTTCSEEECCSSCCCEE-----EC--SCCSCCCE
T ss_pred CCCCCCc-------ChhhhhhhhhhhcccCcccc---------ccCCchhheeeccCCccccc-----cc--ccCCCCCE
Confidence 9998862 25668899999999998874 34567899999999998763 22 22468999
Q ss_pred EEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhc
Q 009168 360 VYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEG 439 (541)
Q Consensus 360 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 439 (541)
|+|++|.+++. ..+ ..+++|+.|+|++|.+++..+.. +..+++|+.|+|++|.++. ++..+. .
T Consensus 237 L~L~~n~l~~~--~~l-----~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~-----l~~~~~-~ 299 (597)
T 3oja_B 237 LKLQHNNLTDT--AWL-----LNYPGLVEVDLSYNELEKIMYHP----FVKMQRLERLYISNNRLVA-----LNLYGQ-P 299 (597)
T ss_dssp EECCSSCCCCC--GGG-----GGCTTCSEEECCSSCCCEEESGG----GTTCSSCCEEECTTSCCCE-----EECSSS-C
T ss_pred EECCCCCCCCC--hhh-----ccCCCCCEEECCCCccCCCCHHH----hcCccCCCEEECCCCCCCC-----CCcccc-c
Confidence 99999999863 222 23699999999999999875544 4455999999999999985 233333 6
Q ss_pred CCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 440 HGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 440 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
+++|+.|+|++|.|+. ++..+..+++|++|+|++|.|+...
T Consensus 300 l~~L~~L~Ls~N~l~~-----i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLH-----VERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CTTCCEEECCSSCCCC-----CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCCCcEEECCCCCCCc-----cCcccccCCCCCEEECCCCCCCCcC
Confidence 8999999999999986 5555667899999999999987643
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=4.3e-24 Score=228.40 Aligned_cols=311 Identities=20% Similarity=0.186 Sum_probs=167.9
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.+++|+|++|.+..+.. ..+... ++|++|+|++|.+.......+... ++|++|+|++|.+...+..
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-------~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-------GDLRAC-ANLQVLILKSSRINTIEGDAFYSL-----GSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCCCEECS-------STTSSC-TTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCccCccCh-------hhhhcC-CcccEEECCCCCcCccChhhcccc-----ccCCEEECCCCccCccCHH
Confidence 578888888887543322 122222 788888888888765433333222 5788888888888776654
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCC-CCHHHHHHHHHhcCCCCCccEEEcC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDG-ISEEAAQAILELIPSTEKLKVLHFH 279 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls 279 (541)
.+..+ ++|++|+|++|.++..+. ...+..+++|++|++++|. ++.... ..+..+++|++|+++
T Consensus 93 ~~~~l---------~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 93 WFGPL---------SSLKYLNLMGNPYQTLGV---TSLFPNLTNLQTLRIGNVETFSEIRR----IDFAGLTSLNELEIK 156 (549)
T ss_dssp HHTTC---------TTCCEEECTTCCCSSSCS---SCSCTTCTTCCEEEEEESSSCCEECT----TTTTTCCEEEEEEEE
T ss_pred HhccC---------CCCcEEECCCCcccccch---hhhhhccCCccEEECCCCccccccCH----hhhhcccccCeeecc
Confidence 44333 478888888887764211 1234556777777777776 332111 123445666777776
Q ss_pred CCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCC--------------------
Q 009168 280 NNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMF-------------------- 339 (541)
Q Consensus 280 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l-------------------- 339 (541)
+|.+... ++..+..+++|++|+++.|.+...+. ..+..+++|++|++++|.+
T Consensus 157 ~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 157 ALSLRNY----QSQSLKSIRDIHHLTLHLSESAFLLE----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp ETTCCEE----CTTTTTTCSEEEEEEEECSBSTTHHH----HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred CCccccc----ChhhhhccccCceEecccCcccccch----hhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence 6666542 22334444444445544444432110 0112334444444444443
Q ss_pred -------CchHHHHHHHhcccCC---------------------------------------------------------
Q 009168 340 -------GVEAGVALSEVLPAFP--------------------------------------------------------- 355 (541)
Q Consensus 340 -------~~~~~~~l~~~l~~~~--------------------------------------------------------- 355 (541)
++.....+...+..++
T Consensus 229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence 3333333333332222
Q ss_pred --CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHH
Q 009168 356 --DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIG 433 (541)
Q Consensus 356 --~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~ 433 (541)
+|+.|++++|.++. .+..+.. .+++|+.|++++|.+++..+.. ...+..+++|++|+|++|.++.... .+
T Consensus 309 ~~~L~~L~l~~n~l~~-ip~~~~~----~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~--~~ 380 (549)
T 2z81_A 309 LEKVKRITVENSKVFL-VPCSFSQ----HLKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQK--TG 380 (549)
T ss_dssp STTCCEEEEESSCCCC-CCHHHHH----HCTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHHH--HH
T ss_pred cccceEEEeccCcccc-CCHHHHh----cCccccEEEccCCccccccccc-hhhhhccccCcEEEccCCccccccc--ch
Confidence 33444444444432 1222211 2577777777777777654322 1123445677777777777764321 12
Q ss_pred HHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC
Q 009168 434 KSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 434 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
..+. .+++|++|++++|.|+. ++..+..+++|++|++++|.|+
T Consensus 381 ~~~~-~l~~L~~L~Ls~N~l~~-----lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 381 EILL-TLKNLTSLDISRNTFHP-----MPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp HHGG-GCTTCCEEECTTCCCCC-----CCSCCCCCTTCCEEECTTSCCS
T ss_pred hhhh-cCCCCCEEECCCCCCcc-----CChhhcccccccEEECCCCCcc
Confidence 3344 67777777777777764 4444555666777777777665
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=1.2e-24 Score=233.29 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=107.7
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHH
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALA 376 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 376 (541)
.+++|++|++++|+++.. ++..+..+++|+.|+|++|.++.. ..++..+..+++|+.|++++|.++...+....
T Consensus 351 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNF--FKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SCCCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBT--THHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCc--ccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 445566666666666542 334455666666666666666541 11344556666677777776666542221111
Q ss_pred HHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 377 GALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 377 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
..+++|+.|++++|.+++..+..+ .++|++|+|++|.|+ .++..+. .+++|++|+|++|+|+.
T Consensus 425 ----~~l~~L~~L~l~~n~l~~~~~~~l------~~~L~~L~L~~N~l~-----~ip~~~~-~l~~L~~L~L~~N~l~~- 487 (562)
T 3a79_B 425 ----AWAESILVLNLSSNMLTGSVFRCL------PPKVKVLDLHNNRIM-----SIPKDVT-HLQALQELNVASNQLKS- 487 (562)
T ss_dssp ----CCCTTCCEEECCSSCCCGGGGSSC------CTTCSEEECCSSCCC-----CCCTTTT-SSCCCSEEECCSSCCCC-
T ss_pred ----cCcccCCEEECCCCCCCcchhhhh------cCcCCEEECCCCcCc-----ccChhhc-CCCCCCEEECCCCCCCC-
Confidence 124677777777777765432211 158999999999888 5566666 78999999999999986
Q ss_pred HHHHHHHH-HhcCCCccEEEecCCCCChh-HHHHHHH
Q 009168 457 GARLLAQV-AVNKPGLKMLNINGNFIPDE-GIDEVKE 491 (541)
Q Consensus 457 ~~~~l~~~-l~~~~~L~~L~L~~N~i~~~-g~~~l~~ 491 (541)
++.. +..+++|+.|++++|++..+ ....+.+
T Consensus 488 ----l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~ 520 (562)
T 3a79_B 488 ----VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520 (562)
T ss_dssp ----CCTTSTTTCTTCCCEECCSCCBCCCHHHHHHHH
T ss_pred ----CCHHHHhcCCCCCEEEecCCCcCCCcchHHHHH
Confidence 4443 77889999999999998753 3444433
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=5.8e-24 Score=225.84 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=92.1
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.+++|+|++|.+..+.... +..+ ++|++|+|++|.+.......+... ++|++|+|++|.++..+..
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~----~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSD----ILSL----SKLRILIISHNRIQYLDISVFKFN-----QELEYLDLSHNKLVKISCH 87 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHH----HTTC----TTCCEEECCSSCCCEEEGGGGTTC-----TTCCEEECCSSCCCEEECC
T ss_pred ccccEEECCCCcccccChhh----cccc----ccccEEecCCCccCCcChHHhhcc-----cCCCEEecCCCceeecCcc
Confidence 78999999999876544322 2333 799999999999986544333333 6999999999999876533
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCc--cEEEc
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKL--KVLHF 278 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L--~~L~L 278 (541)
..++|++|+|++|.++... ++..++.+++|++|+|++|.++... +..+++| +.|++
T Consensus 88 ------------~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 88 ------------PTVNLKHLDLSFNAFDALP---ICKEFGNMSQLKFLGLSTTHLEKSS-------VLPIAHLNISKVLL 145 (520)
T ss_dssp ------------CCCCCSEEECCSSCCSSCC---CCGGGGGCTTCCEEEEEESSCCGGG-------GGGGTTSCEEEEEE
T ss_pred ------------ccCCccEEeccCCcccccc---chhhhccCCcceEEEecCcccchhh-------ccccccceeeEEEe
Confidence 2369999999999987531 1234677799999999999998632 2223455 77777
Q ss_pred CCCCC
Q 009168 279 HNNMT 283 (541)
Q Consensus 279 s~n~l 283 (541)
++|.+
T Consensus 146 ~~n~l 150 (520)
T 2z7x_B 146 VLGET 150 (520)
T ss_dssp EECTT
T ss_pred ecccc
Confidence 66655
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=3.7e-25 Score=239.57 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=21.1
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCCh
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLED 369 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 369 (541)
+..+++|++|++++|.++. ++..+..+++|++|++++|.++.
T Consensus 274 ~~~l~~L~~L~l~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSE-----LPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TTTCTTCSEEECTTSCCSC-----CCSSCCSCTTCCEEECTTCCCSB
T ss_pred hccccCCCEEeccCCccCC-----CChhhcccccCCEEECccCCcCc
Confidence 3344555555555555543 24444455555555555555544
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=3e-25 Score=241.11 Aligned_cols=290 Identities=14% Similarity=0.155 Sum_probs=170.5
Q ss_pred CcceEEEeeCCCCCch----------HHHHHHHHHHHh----ccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCee
Q 009168 153 NSYTRICFSNKSFGLG----------ASRVAAPILRLI----KDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLR 218 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~----------~~~~l~~~l~~~----~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~ 218 (541)
++|++|+|++|.+... .......++..+ -++|++|+|++|.+....+..+.. -++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~---------l~~L~ 276 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA---------LPEMQ 276 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT---------CSSCC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc---------CCCCC
Confidence 7899999999988752 000001111111 158999999998755433222222 25899
Q ss_pred EEEcCCCC-CCh-hHHHHHHHH--hhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 219 YLNLSHNA-LGE-KGVRAFGAL--LKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 219 ~L~Ls~n~-l~~-~~~~~l~~~--l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
+|+|++|. ++. ..+..+..+ +..+++|++|+|++|.++. .+. ...+..+++|++|++++|.+... ++ .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~--~~~l~~l~~L~~L~L~~N~l~g~----ip-~ 348 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPV--ETSLQKMKKLGMLECLYNQLEGK----LP-A 348 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCC--HHHHTTCTTCCEEECCSCCCEEE----CC-C
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCc--hhhhccCCCCCEEeCcCCcCccc----hh-h
Confidence 99999998 886 545545442 2445788999999988873 222 01334557888888888888721 45 5
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCC-cCEEEccCCCCCchHHHHHHHhcccCC--CCCEEEcccCCCChhH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTH-LKKLDLRDNMFGVEAGVALSEVLPAFP--DLTEVYLSYLNLEDEG 371 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~l~~~~ 371 (541)
+..+++|++|++++|+++. ++..+..+++ |++|++++|.++. ++..+...+ +|+.|++++|.+++..
T Consensus 349 ~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~~~ 418 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFSYNEIGSVD 418 (636)
T ss_dssp CEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECCSSCTTTTT
T ss_pred hCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECcCCcCCCcc
Confidence 6667778888888877762 4555667777 7778877777764 344444433 6777777777766544
Q ss_pred HHHHHHHH--hhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC-------CC
Q 009168 372 AEALAGAL--KECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH-------GQ 442 (541)
Q Consensus 372 ~~~l~~~l--~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-------~~ 442 (541)
+..+.... .-.+++|+.|++++|.++...... +..+++|++|+|++|.++. ++....... ++
T Consensus 419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~l~~L~~L~Ls~N~l~~-----i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNMLTE-----IPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHH----HHTTCCCSEEECCSSCCSB-----CCSSSSEETTEECTTGGG
T ss_pred hhhhcccccccccCCCCCEEECcCCccCcCCHHH----HccCCCCCEEECCCCCCCC-----cCHHHhccccccccccCC
Confidence 43332000 001346677777777666332221 2223666666666666652 222111011 16
Q ss_pred ccEEEccCCCCChHHHHHHHHHHh--cCCCccEEEecCCCCCh
Q 009168 443 LIEIDLSTNSMKRAGARLLAQVAV--NKPGLKMLNINGNFIPD 483 (541)
Q Consensus 443 L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~N~i~~ 483 (541)
|++|+|++|.|+. ++..+. .+++|+.|+|++|+|+.
T Consensus 490 L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 490 LTSIDLRFNKLTK-----LSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CCEEECCSSCCCB-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred ccEEECcCCcCCc-----cChhhhhccCCCcCEEECCCCCCCC
Confidence 6666666666663 444443 55666666666666653
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=6.9e-25 Score=238.22 Aligned_cols=221 Identities=11% Similarity=0.097 Sum_probs=133.7
Q ss_pred HHhhhccCCcEEeccCCCcccc----------cHHHHHHHhcccc--CCCCcceEEEeeCCCCCchHHHHHHHHHHHhcc
Q 009168 115 AEKATAASQTVFDISGGQRGFI----------EEEEAKLLLGPLT--EPGNSYTRICFSNKSFGLGASRVAAPILRLIKD 182 (541)
Q Consensus 115 ~~~~~~~~l~~ldls~~~~~~~----------~~~~~~~ll~~l~--~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~ 182 (541)
......+.+++|+|++|.+.-. .......+...+. .. .+|++|+|++|.+.......+..+ +
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l-----~ 273 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKAL-----P 273 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCTTTTTC-----S
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChHHHhcC-----C
Confidence 4466678899999999985420 0001111344444 33 789999999998764333222222 6
Q ss_pred CccEEEcCCCc-CCC-chHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHH--HhhcCCCccEEEecCCCCCHH
Q 009168 183 QLTEVDLSDFI-AGR-PEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGA--LLKSQNNLEELHLMNDGISEE 258 (541)
Q Consensus 183 ~L~~L~Ls~n~-~~~-~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~ 258 (541)
+|++|+|++|. ++. ..+..+..+. .....++|++|+|++|.++. ++. .+..+++|++|+|++|.+++.
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~---~~~~l~~L~~L~L~~n~l~~-----ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALA---DAPVGEKIQIIYIGYNNLKT-----FPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHH---HSGGGGTCCEEECCSSCCSS-----CCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhh---ccccCCCCCEEECCCCcCCc-----cCchhhhccCCCCCEEeCcCCcCccc
Confidence 89999999997 765 3333333331 11112589999999998873 222 466678899999999888743
Q ss_pred HHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-ccEEEecCCCCChhHHHHHHHHhhcCC--CcCEEEcc
Q 009168 259 AAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPA-LEDFRCSSTRIGAEGGIALAKALGQCT--HLKKLDLR 335 (541)
Q Consensus 259 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~L~ 335 (541)
.+ .+..+++|++|++++|.+.. ++..+..+++ |++|++++|.++. ++..+...+ +|+.|+++
T Consensus 346 ip-----~~~~l~~L~~L~L~~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 346 LP-----AFGSEIKLASLNLAYNQITE-----IPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CC-----CCEEEEEESEEECCSSEEEE-----CCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTTCSSCEEEEECC
T ss_pred hh-----hhCCCCCCCEEECCCCcccc-----ccHhhhhhcccCcEEEccCCcCcc-----cchhhhhcccCccCEEECc
Confidence 22 33445677777777777663 5555666666 7777777777662 333333322 56666666
Q ss_pred CCCCCchHHHHHHHhcc-------cCCCCCEEEcccCCCC
Q 009168 336 DNMFGVEAGVALSEVLP-------AFPDLTEVYLSYLNLE 368 (541)
Q Consensus 336 ~n~l~~~~~~~l~~~l~-------~~~~L~~L~L~~n~l~ 368 (541)
+|.++.. ++..+. .+++|+.|+|++|.++
T Consensus 411 ~N~l~~~----~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~ 446 (636)
T 4eco_A 411 YNEIGSV----DGKNFDPLDPTPFKGINVSSINLSNNQIS 446 (636)
T ss_dssp SSCTTTT----TTCSSCTTCSSCCCCCCEEEEECCSSCCC
T ss_pred CCcCCCc----chhhhcccccccccCCCCCEEECcCCccC
Confidence 6666543 133333 4445666666666555
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.6e-25 Score=219.70 Aligned_cols=298 Identities=15% Similarity=0.123 Sum_probs=160.6
Q ss_pred CCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHH
Q 009168 122 SQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEA 201 (541)
Q Consensus 122 ~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~ 201 (541)
.++.++++++.+..+.. .+ .+.++.|+|++|.+.......+..+ ++|++|+|++|.++...+..
T Consensus 32 ~l~~l~~~~~~l~~lp~--------~~---~~~l~~L~L~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK--------DL---PPDTALLDLQNNKITEIKDGDFKNL-----KNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCC--------SC---CTTCCEEECCSSCCCCBCTTTTTTC-----TTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCc--------cC---CCCCeEEECCCCcCCEeChhhhccC-----CCCCEEECCCCcCCeeCHHH
Confidence 56777777766432221 11 1467777777777664332222222 46777777777666553322
Q ss_pred HHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCC
Q 009168 202 LEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNN 281 (541)
Q Consensus 202 l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n 281 (541)
+..+ ++|++|+|++|.++.... . ..++|++|++++|.++......+ ..+++|++|++++|
T Consensus 96 ~~~l---------~~L~~L~Ls~n~l~~l~~-----~--~~~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n 155 (330)
T 1xku_A 96 FAPL---------VKLERLYLSKNQLKELPE-----K--MPKTLQELRVHENEITKVRKSVF----NGLNQMIVVELGTN 155 (330)
T ss_dssp TTTC---------TTCCEEECCSSCCSBCCS-----S--CCTTCCEEECCSSCCCBBCHHHH----TTCTTCCEEECCSS
T ss_pred hcCC---------CCCCEEECCCCcCCccCh-----h--hcccccEEECCCCcccccCHhHh----cCCccccEEECCCC
Confidence 2221 467777777776663211 1 12567777777777665433322 34467777777777
Q ss_pred CCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEE
Q 009168 282 MTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVY 361 (541)
Q Consensus 282 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 361 (541)
.+...+. .+..+..+++|++|++++|.++.. +.. ..++|++|++++|.++... +..+..+++|+.|+
T Consensus 156 ~l~~~~~--~~~~~~~l~~L~~L~l~~n~l~~l-----~~~--~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 156 PLKSSGI--ENGAFQGMKKLSYIRIADTNITTI-----PQG--LPPSLTELHLDGNKITKVD----AASLKGLNNLAKLG 222 (330)
T ss_dssp CCCGGGB--CTTGGGGCTTCCEEECCSSCCCSC-----CSS--CCTTCSEEECTTSCCCEEC----TGGGTTCTTCCEEE
T ss_pred cCCccCc--ChhhccCCCCcCEEECCCCccccC-----Ccc--ccccCCEEECCCCcCCccC----HHHhcCCCCCCEEE
Confidence 6653221 224455667777777777766532 111 1256777777777766531 34566667777777
Q ss_pred cccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhh-hcC
Q 009168 362 LSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLE-EGH 440 (541)
Q Consensus 362 L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~ 440 (541)
+++|.+++..+..+.. +++|+.|++++|.++.. ...+..+++|++|+|++|.|+..+...++.... ...
T Consensus 223 Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~l-----p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 223 LSFNSISAVDNGSLAN-----TPHLRELHLNNNKLVKV-----PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp CCSSCCCEECTTTGGG-----STTCCEEECCSSCCSSC-----CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTS
T ss_pred CCCCcCceeChhhccC-----CCCCCEEECCCCcCccC-----ChhhccCCCcCEEECCCCcCCccChhhcCCccccccc
Confidence 7777666543333322 46677777777766621 112344566777777777766443322211000 013
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 441 GQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
+.|+.|++++|.+....+ .+..+..++.|+.++|++|+
T Consensus 293 ~~l~~l~l~~N~~~~~~i--~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEI--QPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCCSEEECCSSSSCGGGS--CGGGGTTCCCGGGEEC----
T ss_pred ccccceEeecCccccccc--CccccccccceeEEEecccC
Confidence 566677777776654211 12345556667777776663
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=5.2e-24 Score=236.08 Aligned_cols=248 Identities=14% Similarity=0.131 Sum_probs=149.2
Q ss_pred HHhhhccCCcEEeccCCCcccc-------c---HHHHHHHhcccc--CCCCcceEEEeeCCCCCchHHHHHHHHHHHhcc
Q 009168 115 AEKATAASQTVFDISGGQRGFI-------E---EEEAKLLLGPLT--EPGNSYTRICFSNKSFGLGASRVAAPILRLIKD 182 (541)
Q Consensus 115 ~~~~~~~~l~~ldls~~~~~~~-------~---~~~~~~ll~~l~--~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~ 182 (541)
......+.++.|+|++|.+.-. . ......+...+. .. ++|+.|+|++|.+.......+..+ +
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L-----~ 515 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDL-----P 515 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGC-----S
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCC-----C
Confidence 4456678899999999985420 0 000001333332 33 789999999998654333222222 6
Q ss_pred CccEEEcCCCc-CCC-chHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHH--HhhcCCCccEEEecCCCCCHH
Q 009168 183 QLTEVDLSDFI-AGR-PEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGA--LLKSQNNLEELHLMNDGISEE 258 (541)
Q Consensus 183 ~L~~L~Ls~n~-~~~-~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~i~~~ 258 (541)
+|++|+|++|. ++. ..+..+..+. ......++|++|+|++|.++. ++. .+..+++|+.|+|++|.++..
T Consensus 516 ~L~~L~Ls~N~~lsg~~iP~~i~~L~--~~~~~l~~L~~L~Ls~N~L~~-----ip~~~~l~~L~~L~~L~Ls~N~l~~l 588 (876)
T 4ecn_A 516 ELQSLNIACNRGISAAQLKADWTRLA--DDEDTGPKIQIFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVRHL 588 (876)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHH--HCTTTTTTCCEEECCSSCCCB-----CCCHHHHTTCTTCCEEECTTSCCCBC
T ss_pred CCCEEECcCCCCcccccchHHHHhhh--hcccccCCccEEEeeCCcCCc-----cCChhhhhcCCCCCEEECCCCCcccc
Confidence 89999999997 765 3333333332 122233689999999998883 222 466778899999999988732
Q ss_pred HHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCC-ccEEEecCCCCChhHHHHHHHHhhcCC--CcCEEEcc
Q 009168 259 AAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPA-LEDFRCSSTRIGAEGGIALAKALGQCT--HLKKLDLR 335 (541)
Q Consensus 259 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~--~L~~L~L~ 335 (541)
+ .+..+++|+.|+|++|.+.. ++..+..+++ |+.|+|++|.++. ++..+...+ +|+.|+|+
T Consensus 589 -p-----~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 589 -E-----AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp -C-----CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTCSSCEEEEECC
T ss_pred -h-----hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECcCCCCCc-----CchhhhccccCCCCEEECc
Confidence 1 45667888999999888874 6666777787 8888888888773 333344333 37777777
Q ss_pred CCCCCchHHHHHHHhcc--cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 336 DNMFGVEAGVALSEVLP--AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDIT 397 (541)
Q Consensus 336 ~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 397 (541)
+|.++... ..++..+. .+++|+.|+|++|.++. .+..+.. .+++|+.|+|++|.|+
T Consensus 653 ~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~----~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 653 YNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQK-FPTELFA----TGSPISTIILSNNLMT 710 (876)
T ss_dssp SSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHH----TTCCCSEEECCSCCCS
T ss_pred CCcCCCcc-ccchhhhccccCCCcCEEEccCCcCCc-cCHHHHc----cCCCCCEEECCCCcCC
Confidence 77765420 00000111 22356666666666653 2222221 2355555555555554
No 38
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.5e-22 Score=197.82 Aligned_cols=209 Identities=19% Similarity=0.249 Sum_probs=95.7
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCC-CCChhHHHHHH
Q 009168 242 QNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSST-RIGAEGGIALA 320 (541)
Q Consensus 242 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 320 (541)
+++|++|+|++|.++... +...+..+++|++|++++|.+++. .+..+..+++|++|++++| .+++.+ ++
T Consensus 92 ~~~L~~L~L~~~~l~~~~---~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~---l~ 161 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVST---LHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFA---LQ 161 (336)
T ss_dssp CBCCCEEECTTCEECHHH---HHHHHTTBCCCSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHH---HH
T ss_pred CCCCCEEEccCCCcCHHH---HHHHHhhCCCCCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHH---HH
Confidence 344555555555444321 112223334555555555554432 2233344455555555555 444332 23
Q ss_pred HHhhcCCCcCEEEccCC-CCCchHHHHHHHhcccCC-CCCEEEcccC--CCChhHHHHHHHHHhhcCCCccEEEecCCC-
Q 009168 321 KALGQCTHLKKLDLRDN-MFGVEAGVALSEVLPAFP-DLTEVYLSYL--NLEDEGAEALAGALKECAPSLEVLDLAGND- 395 (541)
Q Consensus 321 ~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 395 (541)
..+..+++|++|++++| .+++.+ ++..+..++ +|++|++++| .+++.....+.. .+++|+.|++++|.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----RCPNLVHLDLSDSVM 234 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH----HCTTCSEEECTTCTT
T ss_pred HHHhcCCCCCEEcCCCCCCcChHH---HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh----hCCCCCEEeCCCCCc
Confidence 33444555555555555 555432 233334445 5555555555 344333222221 14556666666555
Q ss_pred CCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEE
Q 009168 396 ITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKML 474 (541)
Q Consensus 396 l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 474 (541)
+++..+..+ ..+++|++|+|++| .+.+.++.. +. .+++|++|++++| +++.++..+.. . |..|
T Consensus 235 l~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~~~~----l~-~~~~L~~L~l~~~-i~~~~~~~l~~---~---l~~L 298 (336)
T 2ast_B 235 LKNDCFQEF----FQLNYLQHLSLSRCYDIIPETLLE----LG-EIPTLKTLQVFGI-VPDGTLQLLKE---A---LPHL 298 (336)
T ss_dssp CCGGGGGGG----GGCTTCCEEECTTCTTCCGGGGGG----GG-GCTTCCEEECTTS-SCTTCHHHHHH---H---STTS
T ss_pred CCHHHHHHH----hCCCCCCEeeCCCCCCCCHHHHHH----Hh-cCCCCCEEeccCc-cCHHHHHHHHh---h---Ccce
Confidence 444433322 23355666666665 344443322 22 4566666666666 55554443332 1 2333
Q ss_pred EecCCCCCh
Q 009168 475 NINGNFIPD 483 (541)
Q Consensus 475 ~L~~N~i~~ 483 (541)
++++|+++.
T Consensus 299 ~l~~n~l~~ 307 (336)
T 2ast_B 299 QINCSHFTT 307 (336)
T ss_dssp EESCCCSCC
T ss_pred EEecccCcc
Confidence 355555544
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=1.8e-24 Score=215.97 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=209.2
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
.+++.++++++.+.. ++....+++++|+|++|.++..+...+..+ ++|++|+|++|.++....
T Consensus 31 c~l~~l~~~~~~l~~--------lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~~ 93 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK--------VPKDLPPDTALLDLQNNKITEIKDGDFKNL---------KNLHTLILINNKISKISP 93 (330)
T ss_dssp EETTEEECTTSCCCS--------CCCSCCTTCCEEECCSSCCCCBCTTTTTTC---------TTCCEEECCSSCCCCBCT
T ss_pred CCCeEEEecCCCccc--------cCccCCCCCeEEECCCCcCCEeChhhhccC---------CCCCEEECCCCcCCeeCH
Confidence 478899999988763 222234689999999999988765433322 599999999999986433
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
..+..+++|++|+|++|.++... . ...++|++|++++|.+... .+..+..+++|+.|++++|.++
T Consensus 94 ----~~~~~l~~L~~L~Ls~n~l~~l~-----~--~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 94 ----GAFAPLVKLERLYLSKNQLKELP-----E--KMPKTLQELRVHENEITKV----RKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSBCC-----S--SCCTTCCEEECCSSCCCBB----CHHHHTTCTTCCEEECCSSCCC
T ss_pred ----HHhcCCCCCCEEECCCCcCCccC-----h--hhcccccEEECCCCccccc----CHhHhcCCccccEEECCCCcCC
Confidence 34566799999999999987421 1 1126999999999998863 2355788999999999999997
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEec
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLA 392 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 392 (541)
..+. .+..+..+++|++|++++|.++. ++..+ .++|++|++++|.++...+..+.. +++|+.|+++
T Consensus 159 ~~~~--~~~~~~~l~~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~Ls 224 (330)
T 1xku_A 159 SSGI--ENGAFQGMKKLSYIRIADTNITT-----IPQGL--PPSLTELHLDGNKITKVDAASLKG-----LNNLAKLGLS 224 (330)
T ss_dssp GGGB--CTTGGGGCTTCCEEECCSSCCCS-----CCSSC--CTTCSEEECTTSCCCEECTGGGTT-----CTTCCEEECC
T ss_pred ccCc--ChhhccCCCCcCEEECCCCcccc-----CCccc--cccCCEEECCCCcCCccCHHHhcC-----CCCCCEEECC
Confidence 5432 34567889999999999999886 23333 278999999999998765555543 6899999999
Q ss_pred CCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHH--hcCCC
Q 009168 393 GNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVA--VNKPG 470 (541)
Q Consensus 393 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~~ 470 (541)
+|.+++..+.. +..+++|++|+|++|.++ .++..+. .+++|++|++++|.|+..+...+.... ...+.
T Consensus 225 ~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~-----~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 225 FNSISAVDNGS----LANTPHLRELHLNNNKLV-----KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp SSCCCEECTTT----GGGSTTCCEEECCSSCCS-----SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCcCceeChhh----ccCCCCCCEEECCCCcCc-----cCChhhc-cCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 99998765433 445699999999999998 4555666 899999999999999986433332111 12467
Q ss_pred ccEEEecCCCCChh
Q 009168 471 LKMLNINGNFIPDE 484 (541)
Q Consensus 471 L~~L~L~~N~i~~~ 484 (541)
|+.|++++|++...
T Consensus 295 l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 295 YSGVSLFSNPVQYW 308 (330)
T ss_dssp CSEEECCSSSSCGG
T ss_pred ccceEeecCccccc
Confidence 99999999998753
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=3.7e-22 Score=213.38 Aligned_cols=192 Identities=18% Similarity=0.196 Sum_probs=143.4
Q ss_pred CCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 009168 270 TEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSE 349 (541)
Q Consensus 270 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 349 (541)
+++|++|++++|.+.+..... +..+..+++|++|++++|+++... .....+..+++|++|++++|.++. ++.
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~ 404 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQ--KTGEILLTLKNLTSLDISRNTFHP-----MPD 404 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHH-HTCTTSSTTCCEEECTTSCCCCHH--HHHHHGGGCTTCCEEECTTCCCCC-----CCS
T ss_pred CccccEEEccCCccccccccc-hhhhhccccCcEEEccCCcccccc--cchhhhhcCCCCCEEECCCCCCcc-----CCh
Confidence 478999999999888632111 223567888999999999987532 123457888999999999998885 466
Q ss_pred hcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHH
Q 009168 350 VLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGA 429 (541)
Q Consensus 350 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~ 429 (541)
.+..+++|+.|++++|.++... ..+ .++|+.|++++|.+++. ...+++|++|+|++|.|+.
T Consensus 405 ~~~~~~~L~~L~Ls~N~l~~l~-~~~-------~~~L~~L~Ls~N~l~~~--------~~~l~~L~~L~Ls~N~l~~--- 465 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTGIRVVK-TCI-------PQTLEVLDVSNNNLDSF--------SLFLPRLQELYISRNKLKT--- 465 (549)
T ss_dssp CCCCCTTCCEEECTTSCCSCCC-TTS-------CTTCSEEECCSSCCSCC--------CCCCTTCCEEECCSSCCSS---
T ss_pred hhcccccccEEECCCCCccccc-chh-------cCCceEEECCCCChhhh--------cccCChhcEEECCCCccCc---
Confidence 7777889999999999886421 111 26899999999999864 2456899999999999983
Q ss_pred HHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhH--HHHHHHHHhcC
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG--IDEVKEILKHS 496 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~ 496 (541)
++. .. .+++|++|+|++|+|+.. .+..+..+++|+.|++++|++...- ...+...+...
T Consensus 466 --ip~-~~-~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~ 526 (549)
T 2z81_A 466 --LPD-AS-LFPVLLVMKISRNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 526 (549)
T ss_dssp --CCC-GG-GCTTCCEEECCSSCCCCC----CTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHC
T ss_pred --CCC-cc-cCccCCEEecCCCccCCc----CHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhc
Confidence 333 23 689999999999999985 5556788999999999999987643 34454444443
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=4.7e-24 Score=236.44 Aligned_cols=260 Identities=17% Similarity=0.189 Sum_probs=165.0
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCC-CCh-hHHHHHHHH---hhcCCCccEEEecCCCCC
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNA-LGE-KGVRAFGAL---LKSQNNLEELHLMNDGIS 256 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~-l~~-~~~~~l~~~---l~~~~~L~~L~L~~n~i~ 256 (541)
++|++|+|++|.+....+..+..+ ++|++|+|++|. ++. ..+..+..+ +..+++|++|+|++|.++
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L---------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDL---------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGC---------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred CCCCEEECcCCCCCccChHHHhCC---------CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 567777777775443322222222 477777777776 765 444444432 234457777787777776
Q ss_pred HHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCC-cCEEEcc
Q 009168 257 EEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTH-LKKLDLR 335 (541)
Q Consensus 257 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~L~ 335 (541)
. .+. ...+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|+++. ++..+..+++ |+.|+|+
T Consensus 562 ~-ip~--~~~l~~L~~L~~L~Ls~N~l~~-----lp-~~~~L~~L~~L~Ls~N~l~~-----lp~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 562 E-FPA--SASLQKMVKLGLLDCVHNKVRH-----LE-AFGTNVKLTDLKLDYNQIEE-----IPEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp B-CCC--HHHHTTCTTCCEEECTTSCCCB-----CC-CCCTTSEESEEECCSSCCSC-----CCTTSCEECTTCCEEECC
T ss_pred c-cCC--hhhhhcCCCCCEEECCCCCccc-----ch-hhcCCCcceEEECcCCcccc-----chHHHhhccccCCEEECc
Confidence 2 221 0123455777888888777774 45 66677778888888877762 4555667777 8888888
Q ss_pred CCCCCchHHHHHHHhcccCC--CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCC
Q 009168 336 DNMFGVEAGVALSEVLPAFP--DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQF 413 (541)
Q Consensus 336 ~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 413 (541)
+|.++. ++..+...+ +|+.|+|++|.+++..+...+..-...+++|+.|+|++|.++..... + +..+++
T Consensus 628 ~N~L~~-----lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~-~---~~~l~~ 698 (876)
T 4ecn_A 628 HNKLKY-----IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE-L---FATGSP 698 (876)
T ss_dssp SSCCCS-----CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH-H---HHTTCC
T ss_pred CCCCCc-----CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH-H---HccCCC
Confidence 887764 355554443 37888888887765322100000001235899999999998843322 2 334588
Q ss_pred ccEEEccCCCCChhHHHHHHHHhhhc-------CCCccEEEccCCCCChHHHHHHHHHHh--cCCCccEEEecCCCCCh
Q 009168 414 LTKLNLAENELQDEGAILIGKSLEEG-------HGQLIEIDLSTNSMKRAGARLLAQVAV--NKPGLKMLNINGNFIPD 483 (541)
Q Consensus 414 L~~L~Ls~n~l~~~g~~~l~~~l~~~-------~~~L~~L~Ls~n~i~~~~~~~l~~~l~--~~~~L~~L~L~~N~i~~ 483 (541)
|+.|+|++|.|+ .++..+... +++|++|+|++|+|+. ++..+. .+++|+.|+|++|.|+.
T Consensus 699 L~~L~Ls~N~L~-----~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 699 ISTIILSNNLMT-----SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CSEEECCSCCCS-----CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CCEEECCCCcCC-----ccChHHhccccccccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCc
Confidence 999999999888 333333211 2289999999999884 666665 78889999999998875
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.4e-25 Score=238.24 Aligned_cols=89 Identities=22% Similarity=0.196 Sum_probs=53.4
Q ss_pred CCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 383 APSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 383 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
+++|+.|++++|.+++.. +...+..+++|++|+|++|.++... +..+. .+++|++|+|++|.++.. .+
T Consensus 447 l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~-~l~~L~~L~Ls~N~l~~~----~~ 514 (606)
T 3vq2_A 447 LTSLNTLKMAGNSFKDNT---LSNVFANTTNLTFLDLSKCQLEQIS----WGVFD-TLHRLQLLNMSHNNLLFL----DS 514 (606)
T ss_dssp CTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEEC----TTTTT-TCTTCCEEECCSSCCSCE----EG
T ss_pred CCCCCEEECCCCcCCCcc---hHHhhccCCCCCEEECCCCcCCccC----hhhhc-ccccCCEEECCCCcCCCc----CH
Confidence 355555555555554421 0112334467777777777766432 22333 677777777777777764 45
Q ss_pred HHHhcCCCccEEEecCCCCCh
Q 009168 463 QVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~ 483 (541)
..+..+++|++|+|++|+|+.
T Consensus 515 ~~~~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp GGTTTCTTCCEEECTTSCCCC
T ss_pred HHccCCCcCCEEECCCCcCcc
Confidence 556667777777777777764
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=3.3e-24 Score=232.10 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=106.6
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChh-HHHHHHHHHhhcCCCccEEEecCCCCCHHH
Q 009168 322 ALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDE-GAEALAGALKECAPSLEVLDLAGNDITAKA 400 (541)
Q Consensus 322 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 400 (541)
.+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+++. .+..+. .+++|+.|++++|.+++..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~ 489 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKID----FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA-----NTTNLTFLDLSKCQLEQIS 489 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEEC----CTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----TCTTCCEEECTTSCCCEEC
T ss_pred hhhccccCCEEECcCCCCCcc----chhhhcCCCCCCEEECCCCcCCCcchHHhhc-----cCCCCCEEECCCCcCCccC
Confidence 345566666666666666543 245566677777777777777652 222232 3689999999999998765
Q ss_pred HHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCC-CccEEEecCC
Q 009168 401 ASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKP-GLKMLNINGN 479 (541)
Q Consensus 401 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~N 479 (541)
+.. +..+++|++|+|++|.+++.. +..+. .+++|++|+|++|+|+. ++..+...+ +|++|++++|
T Consensus 490 ~~~----~~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~l~~N~l~~-----~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 490 WGV----FDTLHRLQLLNMSHNNLLFLD----SSHYN-QLYSLSTLDCSFNRIET-----SKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTT----TTTCTTCCEEECCSSCCSCEE----GGGTT-TCTTCCEEECTTSCCCC-----EESCGGGSCTTCCEEECCSC
T ss_pred hhh----hcccccCCEEECCCCcCCCcC----HHHcc-CCCcCCEEECCCCcCcc-----cCHhHhhhcccCcEEEccCC
Confidence 544 445589999999999998643 34455 78999999999999986 555577776 5999999999
Q ss_pred CCCh-hHHHHHHHHHhcC
Q 009168 480 FIPD-EGIDEVKEILKHS 496 (541)
Q Consensus 480 ~i~~-~g~~~l~~~l~~~ 496 (541)
++.. .....+.+.+...
T Consensus 556 ~~~c~c~~~~~~~~l~~~ 573 (606)
T 3vq2_A 556 SVACICEHQKFLQWVKEQ 573 (606)
T ss_dssp CCCCSSTTHHHHTTTTTS
T ss_pred CcccCCccHHHHHHHHcC
Confidence 9874 4455555544433
No 44
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.6e-21 Score=193.38 Aligned_cols=255 Identities=14% Similarity=0.202 Sum_probs=195.5
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
..++.++++++.+... .+..++ .++++.|++++|.++..... .+..++|++|+|++|.+++.+
T Consensus 47 ~~~~~l~l~~~~~~~~---~~~~~~---~~~l~~L~l~~n~l~~~~~~----------~~~~~~L~~L~L~~~~l~~~~- 109 (336)
T 2ast_B 47 SLWQTLDLTGKNLHPD---VTGRLL---SQGVIAFRCPRSFMDQPLAE----------HFSPFRVQHMDLSNSVIEVST- 109 (336)
T ss_dssp TTSSEEECTTCBCCHH---HHHHHH---HTTCSEEECTTCEECSCCCS----------CCCCBCCCEEECTTCEECHHH-
T ss_pred hhheeeccccccCCHH---HHHhhh---hccceEEEcCCccccccchh----------hccCCCCCEEEccCCCcCHHH-
Confidence 4578888888887732 223322 25899999999887765432 223469999999999988653
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCC-CCChHHHHHHHHHhhcCCCccEEEecCC-C
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNN-MTGDEGAVAISEIVKHSPALEDFRCSST-R 310 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~ 310 (541)
+...+..+++|++|+|++|.+++..+..+ ..+++|++|++++| .+++.+ ++..+..+++|++|++++| .
T Consensus 110 --~~~~~~~~~~L~~L~L~~~~l~~~~~~~l----~~~~~L~~L~L~~~~~l~~~~---l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 110 --LHGILSQCSKLQNLSLEGLRLSDPIVNTL----AKNSNLVRLNLSGCSGFSEFA---LQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp --HHHHHTTBCCCSEEECTTCBCCHHHHHHH----TTCTTCSEEECTTCBSCCHHH---HHHHHHHCTTCCEEECCCCTT
T ss_pred --HHHHHhhCCCCCEEeCcCcccCHHHHHHH----hcCCCCCEEECCCCCCCCHHH---HHHHHhcCCCCCEEcCCCCCC
Confidence 44557788999999999999998766554 44699999999999 788754 4556778899999999999 9
Q ss_pred CChhHHHHHHHHhhcCC-CcCEEEccCC--CCCchHHHHHHHhcccCCCCCEEEcccCC-CChhHHHHHHHHHhhcCCCc
Q 009168 311 IGAEGGIALAKALGQCT-HLKKLDLRDN--MFGVEAGVALSEVLPAFPDLTEVYLSYLN-LEDEGAEALAGALKECAPSL 386 (541)
Q Consensus 311 i~~~~~~~l~~~l~~~~-~L~~L~L~~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~~L 386 (541)
+++.+ ++..+..++ +|++|+|++| .+++.+ ++..+..+++|+.|++++|. +++..+..+.. +++|
T Consensus 181 l~~~~---~~~~~~~l~~~L~~L~l~~~~~~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-----l~~L 249 (336)
T 2ast_B 181 FTEKH---VQVAVAHVSETITQLNLSGYRKNLQKSD---LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-----LNYL 249 (336)
T ss_dssp CCHHH---HHHHHHHSCTTCCEEECCSCGGGSCHHH---HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-----CTTC
T ss_pred cChHH---HHHHHHhcccCCCEEEeCCCcccCCHHH---HHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC-----CCCC
Confidence 98764 456678899 9999999999 566544 45566778999999999998 78777766643 6999
Q ss_pred cEEEecCC-CCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 387 EVLDLAGN-DITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 387 ~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
+.|++++| .++..+... +..+++|+.|+|++| +++.++..+.. .++. |++++|.++..
T Consensus 250 ~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~-i~~~~~~~l~~----~l~~---L~l~~n~l~~~ 308 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLE----LGEIPTLKTLQVFGI-VPDGTLQLLKE----ALPH---LQINCSHFTTI 308 (336)
T ss_dssp CEEECTTCTTCCGGGGGG----GGGCTTCCEEECTTS-SCTTCHHHHHH----HSTT---SEESCCCSCCT
T ss_pred CEeeCCCCCCCCHHHHHH----HhcCCCCCEEeccCc-cCHHHHHHHHh----hCcc---eEEecccCccc
Confidence 99999999 566654433 455799999999999 88877776653 3444 44899999885
No 45
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=3.3e-24 Score=235.34 Aligned_cols=306 Identities=18% Similarity=0.195 Sum_probs=179.4
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.++.|+|++|.+..+.. ..+..+ ++|++|+|++|.+.......+... ++|++|+|++|.+...+..
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l----~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~l~~~ 91 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRY----SQLTSLDVGFNTISKLEPELCQKL-----PMLKVLNLQHNELSQLSDK 91 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGG----TTCSEEECCSSCCCCCCTTHHHHC-----TTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEECCCCCCCCcCH----HHHhCC----CcCcEEECCCCccCccCHHHHhcc-----cCcCEEECCCCccCccChh
Confidence 678999999988654443 122233 788999999998876544444443 6899999999888876643
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHN 280 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 280 (541)
.+..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.+++..+ ..+..+++|++|++++
T Consensus 92 ~~~~l---------~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~ 154 (680)
T 1ziw_A 92 TFAFC---------TNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGLSSTKL----GTQVQLENLQELLLSN 154 (680)
T ss_dssp TTTTC---------TTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCCSCCCC----CSSSCCTTCCEEECCS
T ss_pred hhccC---------CCCCEEECCCCccCccCh----hHccccCCCCEEECCCCcccccCc----hhhcccccCCEEEccC
Confidence 33222 588888888888765322 235566888888888887765322 2235567888888888
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcC---------------------------CCcCEEE
Q 009168 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQC---------------------------THLKKLD 333 (541)
Q Consensus 281 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~---------------------------~~L~~L~ 333 (541)
|.+.......+ ....+++|++|++++|.++... +..+..+ ++|+.|+
T Consensus 155 n~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 155 NKIQALKSEEL--DIFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp SCCCCBCHHHH--GGGTTCEESEEECTTCCCCCBC----TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred CcccccCHHHh--hccccccccEEECCCCcccccC----hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 87765321111 1224577888888888776431 1223333 4555555
Q ss_pred ccCCCCCchHHHHHHHhcccC--CCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhC
Q 009168 334 LRDNMFGVEAGVALSEVLPAF--PDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALK 411 (541)
Q Consensus 334 L~~n~l~~~~~~~l~~~l~~~--~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 411 (541)
+++|.++... +..+..+ ++|+.|++++|.++...+..+. .+++|+.|++++|.+++..+.. +..+
T Consensus 229 L~~n~l~~~~----~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~----~~~l 295 (680)
T 1ziw_A 229 LSNSQLSTTS----NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-----WLPQLEYFFLEYNNIQHLFSHS----LHGL 295 (680)
T ss_dssp CTTSCCCEEC----TTTTGGGGGSCCCEEECTTSCCCEECTTTTT-----TCTTCCEEECCSCCBSEECTTT----TTTC
T ss_pred ccCCcccccC----hhHhhccCcCCCCEEECCCCCcCccCccccc-----CcccccEeeCCCCccCccChhh----hcCC
Confidence 5555555431 2333333 2377777777766654433332 2567777777777666543332 2333
Q ss_pred CCccEEEccCCCCChhH-HHHHHH----HhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 412 QFLTKLNLAENELQDEG-AILIGK----SLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 412 ~~L~~L~Ls~n~l~~~g-~~~l~~----~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
++|++|+|++|.....- ...++. .+. .+++|++|++++|.|+.. .+..+..+++|++|++++|.
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQ-WLKCLEHLNMEDNDIPGI----KSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTT-TCTTCCEEECCSCCBCCC----CTTTTTTCTTCCEEECTTCB
T ss_pred CCccEEeccchhhhcccccccccccChhhcc-cCCCCCEEECCCCccCCC----ChhHhccccCCcEEECCCCc
Confidence 55666666554332100 000110 223 566777777777776664 33345556666666666654
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.2e-24 Score=233.75 Aligned_cols=167 Identities=20% Similarity=0.155 Sum_probs=97.8
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHH------------------HH--HHhcccCCC
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGV------------------AL--SEVLPAFPD 356 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~------------------~l--~~~l~~~~~ 356 (541)
.+++|++|++++|.++..+. .+..+..+++|++|++++|.+...... .. ...+..+++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred cCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 45666777777777654320 122344555555555555554331000 00 123445556
Q ss_pred CCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCH-HHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHH
Q 009168 357 LTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITA-KAASSLAACIALKQFLTKLNLAENELQDEGAILIGKS 435 (541)
Q Consensus 357 L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 435 (541)
|+.|++++|.+....+..+. .+++|+.|++++|.+++ ..+ ..+..+++|++|+|++|.+++.. +..
T Consensus 423 L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~----~~~ 489 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFN-----GLSSLEVLKMAGNSFQENFLP----DIFTELRNLTFLDLSQCQLEQLS----PTA 489 (570)
T ss_dssp CCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEEC----SCCTTCTTCCEEECTTSCCCEEC----TTT
T ss_pred CCEEeCcCCcccccchhhhh-----cCCcCcEEECcCCcCccccch----hhhhcccCCCEEECCCCccccCC----hhh
Confidence 66666666655543333222 25677777777776652 222 23445578888888888877533 233
Q ss_pred hhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 436 LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 436 l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+. .+++|++|++++|.++.. .+..+..+++|+.|++++|+++.
T Consensus 490 ~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 490 FN-SLSSLQVLNMASNQLKSV----PDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TT-TCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCC
T ss_pred hh-cccCCCEEeCCCCcCCCC----CHHHhhcccCCcEEEecCCcccC
Confidence 44 678888888888888775 34456777888888888888765
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=8.3e-25 Score=218.63 Aligned_cols=276 Identities=16% Similarity=0.126 Sum_probs=119.1
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
+.++.|+|++|.+.......+..+ ++|++|+|++|.++......+..+ ++|++|+|++|.++....
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGL-----QHLYALVLVNNKISKIHEKAFSPL---------RKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTC-----TTCCEEECCSSCCCEECGGGSTTC---------TTCCEEECCSSCCCSCCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCC-----CCCcEEECCCCccCccCHhHhhCc---------CCCCEEECCCCcCCccCc
Confidence 355555555555543222111111 355555555555554432222111 355555555555542111
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
.+ .++|++|++++|.++.... ..+..+++|++|++++|.++..+. .+..+..+ +|++|++++|+++
T Consensus 120 -----~~--~~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 120 -----NL--PSSLVELRIHDNRIRKVPK----GVFSGLRNMNCIEMGGNPLENSGF--EPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp -----SC--CTTCCEEECCSSCCCCCCS----GGGSSCSSCCEEECCSCCCBGGGS--CTTSSCSC-CCSCCBCCSSBCS
T ss_pred -----cc--cccCCEEECCCCccCccCH----hHhCCCccCCEEECCCCccccCCC--CcccccCC-ccCEEECcCCCCC
Confidence 11 1445555555555543211 122344555555555555542110 11222333 5555555555554
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEec
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLA 392 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~ 392 (541)
.. +.. ..++|++|++++|.++... +..+..+++|+.|++++|.++...+..+. .+++|+.|+++
T Consensus 186 ~l-----~~~--~~~~L~~L~l~~n~i~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~ 249 (332)
T 2ft3_A 186 GI-----PKD--LPETLNELHLDHNKIQAIE----LEDLLRYSKLYRLGLGHNQIRMIENGSLS-----FLPTLRELHLD 249 (332)
T ss_dssp SC-----CSS--SCSSCSCCBCCSSCCCCCC----TTSSTTCTTCSCCBCCSSCCCCCCTTGGG-----GCTTCCEEECC
T ss_pred cc-----Ccc--ccCCCCEEECCCCcCCccC----HHHhcCCCCCCEEECCCCcCCcCChhHhh-----CCCCCCEEECC
Confidence 31 111 1145555555555555421 23445555555555555555543322222 13555555555
Q ss_pred CCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHh-hhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCc
Q 009168 393 GNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSL-EEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGL 471 (541)
Q Consensus 393 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l-~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 471 (541)
+|.++.. + ..+..+++|++|+|++|.|+..+...++... ......|+.|++++|.+...++ .+.++..++.|
T Consensus 250 ~N~l~~l-p----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~--~~~~~~~l~~L 322 (332)
T 2ft3_A 250 NNKLSRV-P----AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV--QPATFRCVTDR 322 (332)
T ss_dssp SSCCCBC-C----TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS--CGGGGTTBCCS
T ss_pred CCcCeec-C----hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc--Ccccccccchh
Confidence 5555521 1 1133345555555555555543322221100 0012445555555555542111 22334445555
Q ss_pred cEEEecCC
Q 009168 472 KMLNINGN 479 (541)
Q Consensus 472 ~~L~L~~N 479 (541)
+.|++++|
T Consensus 323 ~~l~l~~n 330 (332)
T 2ft3_A 323 LAIQFGNY 330 (332)
T ss_dssp TTEEC---
T ss_pred hhhhcccc
Confidence 55555554
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-24 Score=233.53 Aligned_cols=146 Identities=18% Similarity=0.159 Sum_probs=81.5
Q ss_pred hcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH--------------------HHhhcC
Q 009168 324 GQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG--------------------ALKECA 383 (541)
Q Consensus 324 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~~~ 383 (541)
..+++|++|++++|.++..+. .+..+..+++|+.|++++|.+...... +.. .....+
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 467889999999999875320 012334456666666666654432111 110 000124
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHH
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQ 463 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~ 463 (541)
++|+.|++++|.+++..+.. +..+++|++|+|++|.+++. .++..+. .+++|++|++++|.++.. .+.
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~---~~p~~~~-~l~~L~~L~l~~n~l~~~----~~~ 488 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGI----FNGLSSLEVLKMAGNSFQEN---FLPDIFT-ELRNLTFLDLSQCQLEQL----SPT 488 (570)
T ss_dssp TTCCEEECTTSCCEECCTTT----TTTCTTCCEEECTTCEEGGG---EECSCCT-TCTTCCEEECTTSCCCEE----CTT
T ss_pred CCCCEEeCcCCcccccchhh----hhcCCcCcEEECcCCcCccc---cchhhhh-cccCCCEEECCCCccccC----Chh
Confidence 55666666666555433222 33346666777766665421 1223334 567777777777777764 344
Q ss_pred HHhcCCCccEEEecCCCCChh
Q 009168 464 VAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 464 ~l~~~~~L~~L~L~~N~i~~~ 484 (541)
.+..+++|++|+|++|.++..
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCC
T ss_pred hhhcccCCCEEeCCCCcCCCC
Confidence 556667777777777776653
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=5.4e-24 Score=211.28 Aligned_cols=260 Identities=22% Similarity=0.201 Sum_probs=148.2
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
..++.++++.+.+. ..+..+... .++|++|+|++|.+.......+..+ ++|++|+|++|.++....
T Consensus 10 ~~l~i~~ls~~~l~----~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l---------~~L~~L~Ls~n~l~~~~~ 75 (317)
T 3o53_A 10 NRYKIEKVTDSSLK----QALASLRQS-AWNVKELDLSGNPLSQISAADLAPF---------TKLELLNLSSNVLYETLD 75 (317)
T ss_dssp TEEEEESCCTTTHH----HHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTC---------TTCCEEECTTSCCEEEEE
T ss_pred CceeEeeccccchh----hhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCC---------CcCCEEECCCCcCCcchh
Confidence 34455555555443 222222222 2467777777777776654444332 477777777777764321
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
+..+++|++|+|++|.+++. ...++|++|++++|.+... + ...+++|++|++++|+++
T Consensus 76 ------~~~l~~L~~L~Ls~n~l~~l---------~~~~~L~~L~l~~n~l~~~-----~--~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 76 ------LESLSTLRTLDLNNNYVQEL---------LVGPSIETLHAANNNISRV-----S--CSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp ------ETTCTTCCEEECCSSEEEEE---------EECTTCCEEECCSSCCSEE-----E--ECCCSSCEEEECCSSCCC
T ss_pred ------hhhcCCCCEEECcCCccccc---------cCCCCcCEEECCCCccCCc-----C--ccccCCCCEEECCCCCCC
Confidence 55567777777777766542 2336777777777776652 1 123566777777777776
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc-ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEe
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL-PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDL 391 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 391 (541)
.. .+..+..+++|++|+|++|.++... +..+ ..+++|++|+|++|.++..... ..+++|+.|+|
T Consensus 134 ~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~l~~L~~L~L 198 (317)
T 3o53_A 134 ML----RDLDEGCRSRVQYLDLKLNEIDTVN----FAELAASSDTLEHLNLQYNFIYDVKGQ-------VVFAKLKTLDL 198 (317)
T ss_dssp SG----GGBCTGGGSSEEEEECTTSCCCEEE----GGGGGGGTTTCCEEECTTSCCCEEECC-------CCCTTCCEEEC
T ss_pred Cc----cchhhhccCCCCEEECCCCCCCccc----HHHHhhccCcCCEEECCCCcCcccccc-------cccccCCEEEC
Confidence 43 1223455667777777777766532 2222 3456677777777766643111 01466777777
Q ss_pred cCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCc
Q 009168 392 AGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGL 471 (541)
Q Consensus 392 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 471 (541)
++|.+++..+. +..+++|++|+|++|.|+. ++..+. .+++|+.|++++|.+... .++..+..++.|
T Consensus 199 s~N~l~~l~~~-----~~~l~~L~~L~L~~N~l~~-----l~~~~~-~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L 264 (317)
T 3o53_A 199 SSNKLAFMGPE-----FQSAAGVTWISLRNNKLVL-----IEKALR-FSQNLEHFDLRGNGFHCG---TLRDFFSKNQRV 264 (317)
T ss_dssp CSSCCCEECGG-----GGGGTTCSEEECTTSCCCE-----ECTTCC-CCTTCCEEECTTCCCBHH---HHHHHHHTCHHH
T ss_pred CCCcCCcchhh-----hcccCcccEEECcCCcccc-----hhhHhh-cCCCCCEEEccCCCccCc---CHHHHHhccccc
Confidence 77766653321 3334667777777776662 333444 566677777777766622 145555556666
Q ss_pred cEEEec
Q 009168 472 KMLNIN 477 (541)
Q Consensus 472 ~~L~L~ 477 (541)
+.|+++
T Consensus 265 ~~l~l~ 270 (317)
T 3o53_A 265 QTVAKQ 270 (317)
T ss_dssp HHHHHH
T ss_pred eEEECC
Confidence 665554
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.9e-24 Score=216.07 Aligned_cols=273 Identities=17% Similarity=0.181 Sum_probs=203.9
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
.+++.++++++.+..- +..+.++|++|+|++|.+...+...+..+ ++|++|+|++|.++....
T Consensus 33 c~l~~l~~~~~~l~~i--------p~~~~~~l~~L~l~~n~i~~~~~~~~~~l---------~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAV--------PKEISPDTTLLDLQNNDISELRKDDFKGL---------QHLYALVLVNNKISKIHE 95 (332)
T ss_dssp EETTEEECCSSCCSSC--------CSCCCTTCCEEECCSSCCCEECTTTTTTC---------TTCCEEECCSSCCCEECG
T ss_pred ccCCEEECCCCCcccc--------CCCCCCCCeEEECCCCcCCccCHhHhhCC---------CCCcEEECCCCccCccCH
Confidence 3688889988877631 22223689999999999887654333322 589999999999986533
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRI 311 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i 311 (541)
..+..+++|++|+|++|.++... ..+ .++|++|++++|.+.. ++ ..+..+++|++|++++|.+
T Consensus 96 ----~~~~~l~~L~~L~L~~n~l~~l~-----~~~--~~~L~~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 96 ----KAFSPLRKLQKLYISKNHLVEIP-----PNL--PSSLVELRIHDNRIRK-----VPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp ----GGSTTCTTCCEEECCSSCCCSCC-----SSC--CTTCCEEECCSSCCCC-----CCSGGGSSCSSCCEEECCSCCC
T ss_pred ----hHhhCcCCCCEEECCCCcCCccC-----ccc--cccCCEEECCCCccCc-----cCHhHhCCCccCCEEECCCCcc
Confidence 34567799999999999987421 111 2699999999999886 33 3578899999999999999
Q ss_pred ChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEe
Q 009168 312 GAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDL 391 (541)
Q Consensus 312 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L 391 (541)
+..+. .+..+..+ +|+.|++++|.++. ++..+ .++|++|++++|.++...+..+.. +++|+.|++
T Consensus 160 ~~~~~--~~~~~~~l-~L~~L~l~~n~l~~-----l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~L 224 (332)
T 2ft3_A 160 ENSGF--EPGAFDGL-KLNYLRISEAKLTG-----IPKDL--PETLNELHLDHNKIQAIELEDLLR-----YSKLYRLGL 224 (332)
T ss_dssp BGGGS--CTTSSCSC-CCSCCBCCSSBCSS-----CCSSS--CSSCSCCBCCSSCCCCCCTTSSTT-----CTTCSCCBC
T ss_pred ccCCC--CcccccCC-ccCEEECcCCCCCc-----cCccc--cCCCCEEECCCCcCCccCHHHhcC-----CCCCCEEEC
Confidence 75332 23345555 89999999999886 34333 278999999999998765444433 689999999
Q ss_pred cCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHH--hcCC
Q 009168 392 AGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVA--VNKP 469 (541)
Q Consensus 392 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l--~~~~ 469 (541)
++|.+++..+.. +..+++|++|+|++|.++ .++..+. .+++|++|++++|.|+..+...+.... ...+
T Consensus 225 ~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~-----~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 225 GHNQIRMIENGS----LSFLPTLRELHLDNNKLS-----RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp CSSCCCCCCTTG----GGGCTTCCEEECCSSCCC-----BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSC
T ss_pred CCCcCCcCChhH----hhCCCCCCEEECCCCcCe-----ecChhhh-cCccCCEEECCCCCCCccChhHccccccccccc
Confidence 999998765433 455699999999999998 4555666 899999999999999986443332211 1146
Q ss_pred CccEEEecCCCCCh
Q 009168 470 GLKMLNINGNFIPD 483 (541)
Q Consensus 470 ~L~~L~L~~N~i~~ 483 (541)
.|+.|++++|++..
T Consensus 295 ~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 295 YYNGISLFNNPVPY 308 (332)
T ss_dssp CBSEEECCSSSSCG
T ss_pred cccceEeecCcccc
Confidence 79999999999874
No 51
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=6.8e-23 Score=224.83 Aligned_cols=280 Identities=23% Similarity=0.218 Sum_probs=184.9
Q ss_pred cEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHH
Q 009168 124 TVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALE 203 (541)
Q Consensus 124 ~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~ 203 (541)
+.+|.+++++..+. ..+ + .++++|+|++|.+.......+... ++|++|+|++|.+....+..+.
T Consensus 7 ~~~~cs~~~L~~ip--------~~~--~-~~l~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~ 70 (680)
T 1ziw_A 7 EVADCSHLKLTQVP--------DDL--P-TNITVLNLTHNQLRRLPAANFTRY-----SQLTSLDVGFNTISKLEPELCQ 70 (680)
T ss_dssp SEEECCSSCCSSCC--------SCS--C-TTCSEEECCSSCCCCCCGGGGGGG-----TTCSEEECCSSCCCCCCTTHHH
T ss_pred CeeECCCCCccccc--------ccc--C-CCCcEEECCCCCCCCcCHHHHhCC-----CcCcEEECCCCccCccCHHHHh
Confidence 57888888765332 222 2 689999999999876443333333 6999999999999888766665
Q ss_pred HHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCC
Q 009168 204 VINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMT 283 (541)
Q Consensus 204 ~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 283 (541)
.+ ++|++|+|++|.++.... ..+..+++|++|+|++|.++...+ ..+..+++|++|++++|.+
T Consensus 71 ~l---------~~L~~L~L~~n~l~~l~~----~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 71 KL---------PMLKVLNLQHNELSQLSD----KTFAFCTNLTELHLMSNSIQKIKN----NPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp HC---------TTCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCCCCS----CTTTTCTTCCEEECCSSCC
T ss_pred cc---------cCcCEEECCCCccCccCh----hhhccCCCCCEEECCCCccCccCh----hHccccCCCCEEECCCCcc
Confidence 54 599999999999985432 236677999999999999875422 2345679999999999988
Q ss_pred ChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcc
Q 009168 284 GDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLS 363 (541)
Q Consensus 284 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 363 (541)
... .+..+..+++|++|++++|.++......+ ....+++|++|++++|.++... +..+..+++|+.|+++
T Consensus 134 ~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 134 SST----KLGTQVQLENLQELLLSNNKIQALKSEEL--DIFANSSLKKLELSSNQIKEFS----PGCFHAIGRLFGLFLN 203 (680)
T ss_dssp SCC----CCCSSSCCTTCCEEECCSSCCCCBCHHHH--GGGTTCEESEEECTTCCCCCBC----TTGGGGSSEECEEECT
T ss_pred ccc----CchhhcccccCCEEEccCCcccccCHHHh--hccccccccEEECCCCcccccC----hhhhhhhhhhhhhhcc
Confidence 762 23456789999999999999976532111 1235689999999999987642 4456666677777777
Q ss_pred cCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCc
Q 009168 364 YLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQL 443 (541)
Q Consensus 364 ~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L 443 (541)
++.+.......++..+. .++|+.|++++|.+++..+..+..+ ..++|++|+|++|.++.... ..+. .+++|
T Consensus 204 ~~~l~~~~~~~~~~~l~--~~~L~~L~L~~n~l~~~~~~~~~~l--~~~~L~~L~Ls~n~l~~~~~----~~~~-~l~~L 274 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGL--KWTNLTMLDLSYNNLNVVGN----DSFA-WLPQL 274 (680)
T ss_dssp TCCCHHHHHHHHHHHHT--TSCCCEEECTTSCCCEECTTTTGGG--GGSCCCEEECTTSCCCEECT----TTTT-TCTTC
T ss_pred ccccChhhHHHHHHHhh--hccccEEEccCCcccccChhHhhcc--CcCCCCEEECCCCCcCccCc----cccc-Ccccc
Confidence 77666555554444332 2556666666666555433332221 01236666666665553221 1222 45555
Q ss_pred cEEEccCCCCCh
Q 009168 444 IEIDLSTNSMKR 455 (541)
Q Consensus 444 ~~L~Ls~n~i~~ 455 (541)
++|++++|.++.
T Consensus 275 ~~L~L~~n~l~~ 286 (680)
T 1ziw_A 275 EYFFLEYNNIQH 286 (680)
T ss_dssp CEEECCSCCBSE
T ss_pred cEeeCCCCccCc
Confidence 555555555544
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-24 Score=242.59 Aligned_cols=140 Identities=13% Similarity=0.059 Sum_probs=87.7
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCch-HHHHHHHHHHHhccCccEEEcCCCcCCCc
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLG-ASRVAAPILRLIKDQLTEVDLSDFIAGRP 197 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~ 197 (541)
..+.++.|||++|.+..+.. ..+... .+|++|+|++|.+... ....+... ++|++|+|++|.+...
T Consensus 22 lp~~l~~LdLs~N~i~~i~~-------~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L-----~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTA-------SSFPFL-EQLQLLELGSQYTPLTIDKEAFRNL-----PNLRILDLGSSKIYFL 88 (844)
T ss_dssp SCTTCCEEEEESCCCCEECS-------SSCSSC-CSCSEEEECTTCCCCEECTTTTSSC-----TTCCEEECTTCCCCEE
T ss_pred CCCCcCEEECCCCcCCccCh-------hHCccc-ccCeEEeCCCCCCccccCHHHhcCC-----CCCCEEECCCCcCccc
Confidence 45678999999988653322 122222 7888999988843211 11122221 5888999988888766
Q ss_pred hHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEE
Q 009168 198 EEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLH 277 (541)
Q Consensus 198 ~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 277 (541)
.+..+..+ ++|++|+|++|.+++..+.. ..+..+++|++|+|++|.+++..+ ...+..+++|++|+
T Consensus 89 ~p~~~~~l---------~~L~~L~Ls~n~l~~~~~~~--~~~~~L~~L~~L~Ls~N~l~~~~~---~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 89 HPDAFQGL---------FHLFELRLYFCGLSDAVLKD--GYFRNLKALTRLDLSKNQIRSLYL---HPSFGKLNSLKSID 154 (844)
T ss_dssp CTTSSCSC---------SSCCCEECTTCCCSSCCSTT--CCCSSCSSCCEEEEESCCCCCCCC---CGGGGTCSSCCEEE
T ss_pred CHhHccCC---------cccCEeeCcCCCCCcccccC--ccccccCCCCEEECCCCccccccc---chhHhhCCCCCEEE
Confidence 43333222 58888888888877532111 125667888888888888765321 12345668888888
Q ss_pred cCCCCCCh
Q 009168 278 FHNNMTGD 285 (541)
Q Consensus 278 Ls~n~l~~ 285 (541)
|++|.+..
T Consensus 155 Ls~N~i~~ 162 (844)
T 3j0a_A 155 FSSNQIFL 162 (844)
T ss_dssp EESSCCCC
T ss_pred CCCCcCCe
Confidence 88887754
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=4.3e-22 Score=207.32 Aligned_cols=170 Identities=18% Similarity=0.206 Sum_probs=94.5
Q ss_pred CCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 009168 269 STEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALS 348 (541)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 348 (541)
.+++|++|++++|.++. ++ +..+++|+.|++++|.++.. .+..+++|+.|++++|.++. ++
T Consensus 168 ~l~~L~~L~ls~n~l~~-----l~--l~~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-----ip 228 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-----LD--VSQNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-----ID 228 (457)
T ss_dssp TCTTCCEEECCSSCCCC-----CC--CTTCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-----CC
T ss_pred cCCcCCEEECCCCccce-----ec--cccCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-----cC
Confidence 34555555555555554 22 44455555555555555532 14455556666666665554 12
Q ss_pred HhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCC----------CHHHHHHHHHHHhhCCCccEEE
Q 009168 349 EVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDI----------TAKAASSLAACIALKQFLTKLN 418 (541)
Q Consensus 349 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l----------~~~~~~~l~~~l~~~~~L~~L~ 418 (541)
+..+++|+.|++++|.+++..+. .+++|+.|++++|.+ .+..+ ...+++|+.|+
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~--------~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ 292 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVS--------TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ------AEGCRKIKELD 292 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCT--------TCTTCCEEECTTCCCSCCCCTTCTTCCEEE------CTTCTTCCCCC
T ss_pred --ccccCCCCEEEeeCCcCCCcCHH--------HCCCCCEEeccCCCCCEEECCCCccCCccc------ccccccCCEEE
Confidence 44555666666666655543211 123333333333322 22111 12346777788
Q ss_pred ccCCCCChh------HHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 419 LAENELQDE------GAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 419 Ls~n~l~~~------g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
|++|..... .+..+ .+. .+++|++|++++|+|+.. . +..+++|+.|++++|++++
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L--~l~-~~~~L~~L~L~~N~l~~l-----~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITEL--DLS-QNPKLVYLYLNNTELTEL-----D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC--CCT-TCTTCCEEECTTCCCSCC-----C--CTTCTTCSEEECCSSCCCB
T ss_pred CCCCcccceeccCCCcceEe--chh-hcccCCEEECCCCccccc-----c--cccCCcCcEEECCCCCCCC
Confidence 877752210 00011 133 678999999999999883 1 6788999999999999986
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=4.6e-25 Score=218.53 Aligned_cols=224 Identities=17% Similarity=0.231 Sum_probs=125.0
Q ss_pred CeeEEEcCC-CCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 216 QLRYLNLSH-NALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 216 ~L~~L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
+|++|+|++ |.+.... +..+..+++|++|+|++|.+++..+. .+..+++|++|++++|.+.. .++..
T Consensus 77 ~L~~L~L~~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~----~~p~~ 144 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPI----PPAIAKLTQLHYLYITHTNVSGAIPD----FLSQIKTLVTLDFSYNALSG----TLPPS 144 (313)
T ss_dssp TCSEEEEEEETTEESCC----CGGGGGCTTCSEEEEEEECCEEECCG----GGGGCTTCCEEECCSSEEES----CCCGG
T ss_pred CCCeeeCCCCCcccccC----ChhHhcCCCCCEEECcCCeeCCcCCH----HHhCCCCCCEEeCCCCccCC----cCChH
Confidence 556666653 5444321 12244456666666666666533222 22334666666666666552 13445
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCC-CcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCT-HLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
+..+++|++|++++|+++.. ++..+..++ .|+.|++++|.++.. ++..+..++ |+.|++++|.+++..+.
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGK----IPPTFANLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEE----CCGGGGGCC-CSEEECCSSEEEECCGG
T ss_pred HhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeecc----CChHHhCCc-ccEEECcCCcccCcCCH
Confidence 55666666666666666532 344455555 666677766666532 244444444 67777777666544333
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
.+. .+++|+.|++++|.+++..+. +...++|++|+|++|.+++. ++..+. .+++|++|+|++|.|
T Consensus 216 ~~~-----~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~----~p~~l~-~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 216 LFG-----SDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGT----LPQGLT-QLKFLHSLNVSFNNL 280 (313)
T ss_dssp GCC-----TTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEEC----CCGGGG-GCTTCCEEECCSSEE
T ss_pred HHh-----cCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCc----CChHHh-cCcCCCEEECcCCcc
Confidence 332 246677777777766543322 33346677777777776642 233444 667777777777776
Q ss_pred ChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 454 KRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 454 ~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
+.. ++.. ..+++|+.|++++|+
T Consensus 281 ~~~----ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 281 CGE----IPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEE----CCCS-TTGGGSCGGGTCSSS
T ss_pred ccc----CCCC-ccccccChHHhcCCC
Confidence 643 3332 455667777777775
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=7.7e-23 Score=229.44 Aligned_cols=173 Identities=18% Similarity=0.196 Sum_probs=82.3
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL 351 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 351 (541)
+|+.|++++|.+... .+..+..+++|+.|+|++|+++.. .+..+..+++|++|+|++|.++.. .+..+
T Consensus 267 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~ 334 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSL----NSRVFETLKDLKVLNLAYNKINKI----ADEAFYGLDNLQVLNLSYNLLGEL----YSSNF 334 (844)
T ss_dssp CCCEEECTTCCCCEE----CSCCSSSCCCCCEEEEESCCCCEE----CTTTTTTCSSCCEEEEESCCCSCC----CSCSC
T ss_pred CccEEECCCCccccc----ChhhhhcCCCCCEEECCCCcCCCC----ChHHhcCCCCCCEEECCCCCCCcc----CHHHh
Confidence 455555555544431 123344455555666665555533 123345555666666666655432 13345
Q ss_pred ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHH
Q 009168 352 PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAIL 431 (541)
Q Consensus 352 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 431 (541)
..+++|+.|++++|.++......+. .+++|+.|+|++|.++... ..++|+.|++++|.++.
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~i~---------~~~~L~~L~l~~N~l~~----- 395 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFK-----FLEKLQTLDLRDNALTTIH---------FIPSIPDIFLSGNKLVT----- 395 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSC-----SCCCCCEEEEETCCSCCCS---------SCCSCSEEEEESCCCCC-----
T ss_pred cCCCCCCEEECCCCCCCccChhhhc-----CCCCCCEEECCCCCCCccc---------CCCCcchhccCCCCccc-----
Confidence 5555666666666655443222221 2456666666666555321 13455555555554441
Q ss_pred HHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC
Q 009168 432 IGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 432 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
++. ...+++.|++++|.++..+. ...+..+++|+.|+|++|.++
T Consensus 396 l~~----~~~~l~~L~ls~N~l~~l~~---~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 396 LPK----INLTANLIHLSENRLENLDI---LYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CCC----CCTTCCEEECCSCCCCSSTT---HHHHTTCTTCCEEEEESCCCC
T ss_pred ccc----cccccceeecccCccccCch---hhhhhcCCccceeeCCCCccc
Confidence 111 23344555555555544321 122335555666666666554
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=3.2e-22 Score=214.47 Aligned_cols=310 Identities=15% Similarity=0.091 Sum_probs=187.8
Q ss_pred ccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchH
Q 009168 120 AASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEE 199 (541)
Q Consensus 120 ~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~ 199 (541)
.+.++.|+|++|.+..+.. ..+... ++|++|+|++|.+.......+... ++|++|+|++|.+...+.
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~-------~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~Ls~N~l~~lp~ 117 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRM-------PDISFL-SELRVLRLSHNRIRSLDFHVFLFN-----QDLEYLDVSHNRLQNISC 117 (562)
T ss_dssp CTTCCEEECCSSCCCCCCG-------GGTTTC-TTCCEEECCSCCCCEECTTTTTTC-----TTCCEEECTTSCCCEECS
T ss_pred CCCcCEEECCCCCccccCh-------hhhccC-CCccEEECCCCCCCcCCHHHhCCC-----CCCCEEECCCCcCCccCc
Confidence 3789999999998654432 122222 789999999998876433333332 689999999998887653
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcC
Q 009168 200 EALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFH 279 (541)
Q Consensus 200 ~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls 279 (541)
. ..++|++|+|++|.++.... +..+..+++|++|+|++|.++.. .+..+ ... +|++|+++
T Consensus 118 ~------------~l~~L~~L~Ls~N~l~~l~~---p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-~~L-~L~~L~L~ 177 (562)
T 3a79_B 118 C------------PMASLRHLDLSFNDFDVLPV---CKEFGNLTKLTFLGLSAAKFRQL---DLLPV-AHL-HLSCILLD 177 (562)
T ss_dssp C------------CCTTCSEEECCSSCCSBCCC---CGGGGGCTTCCEEEEECSBCCTT---TTGGG-TTS-CEEEEEEE
T ss_pred c------------ccccCCEEECCCCCccccCc---hHhhcccCcccEEecCCCccccC---chhhh-hhc-eeeEEEee
Confidence 3 12589999999999876321 13466779999999999998763 22221 222 34999998
Q ss_pred CCCC--Ch--------------------------------------------------HHHHHHHHHhhcCCCccEEEec
Q 009168 280 NNMT--GD--------------------------------------------------EGAVAISEIVKHSPALEDFRCS 307 (541)
Q Consensus 280 ~n~l--~~--------------------------------------------------~~~~~l~~~l~~~~~L~~L~L~ 307 (541)
+|.+ .. .........+...+.|+.|++.
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 8877 21 0111222334555666666666
Q ss_pred CCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHH----------------------------HHHHHh---------
Q 009168 308 STRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAG----------------------------VALSEV--------- 350 (541)
Q Consensus 308 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~----------------------------~~l~~~--------- 350 (541)
++.+.......++..+. .++|++|++++|.+++... ..+...
T Consensus 258 ~~~l~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFW-PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHHT-TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhhh-cccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 66666555544444433 3478888888877652100 001111
Q ss_pred ------------cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEE
Q 009168 351 ------------LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLN 418 (541)
Q Consensus 351 ------------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 418 (541)
...+++|++|++++|.+++..+..+. .+++|+.|++++|.+++.. .+...+..+++|++|+
T Consensus 337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~--~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS-----TLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLD 409 (562)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC-----SCSSCCEEECCSSCCCBTT--HHHHTTTTCTTCCEEE
T ss_pred EccCCCcccccCccCCCCceEEECCCCccccchhhhhc-----ccCCCCEEECCCCCcCCcc--cchhhhcCCCCCCEEE
Confidence 04456677777777777654443332 2567777777777776421 1222344457777777
Q ss_pred ccCCCCChhHHHHHHHH-hhhcCCCccEEEccCCCCChHHHHHHHHHHhcC-CCccEEEecCCCCC
Q 009168 419 LAENELQDEGAILIGKS-LEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK-PGLKMLNINGNFIP 482 (541)
Q Consensus 419 Ls~n~l~~~g~~~l~~~-l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~N~i~ 482 (541)
|++|.++.. ++.. +. .+++|++|++++|.|+.. ++. .. ++|+.|+|++|+|+
T Consensus 410 l~~N~l~~~----~~~~~~~-~l~~L~~L~l~~n~l~~~----~~~---~l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 410 VSLNSLNSH----AYDRTCA-WAESILVLNLSSNMLTGS----VFR---CLPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CTTSCCBSC----CSSCCCC-CCTTCCEEECCSSCCCGG----GGS---SCCTTCSEEECCSSCCC
T ss_pred CCCCcCCCc----cChhhhc-CcccCCEEECCCCCCCcc----hhh---hhcCcCCEEECCCCcCc
Confidence 777776631 1211 22 567777777777777653 221 22 56777777777776
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.7e-22 Score=202.16 Aligned_cols=256 Identities=15% Similarity=0.105 Sum_probs=199.8
Q ss_pred CccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHH
Q 009168 183 QLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQA 262 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 262 (541)
.....+++++.++..+... .++|++|+|++|.++..... .+..+++|++|+|++|.++...+
T Consensus 32 ~~~~c~~~~~~l~~iP~~~------------~~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~-- 93 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGL------------TEAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEE-- 93 (353)
T ss_dssp TTSEEECCSTTCSSCCTTC------------CTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECT--
T ss_pred CCeEeeCCCCCcccccccc------------cccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCH--
Confidence 4455788888777765311 14899999999999865332 35677999999999999986432
Q ss_pred HHHhcCCCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHH--HhhcCCCcCEEEccCCC-
Q 009168 263 ILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAK--ALGQCTHLKKLDLRDNM- 338 (541)
Q Consensus 263 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--~l~~~~~L~~L~L~~n~- 338 (541)
..+..+++|++|++++|.++. ++ ..+..+++|++|++++|+++. ++. .+..+++|++|++++|.
T Consensus 94 --~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 94 --DSFSSLGSLEHLDLSYNYLSN-----LSSSWFKPLSSLTFLNLLGNPYKT-----LGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp --TTTTTCTTCCEEECCSSCCSS-----CCHHHHTTCTTCSEEECTTCCCSS-----SCSSCSCTTCTTCCEEEEEESSS
T ss_pred --hhcCCCCCCCEEECCCCcCCc-----CCHhHhCCCccCCEEECCCCCCcc-----cCchhhhccCCCCcEEECCCCcc
Confidence 234566899999999999986 33 347889999999999999984 332 46789999999999994
Q ss_pred CCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEE
Q 009168 339 FGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLN 418 (541)
Q Consensus 339 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 418 (541)
++.. .+..+..+++|++|++++|.++...+..+.. +++|++|++++|.++...... +...++|+.|+
T Consensus 162 ~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-----l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~L~ 228 (353)
T 2z80_A 162 FTKI----QRKDFAGLTFLEELEIDASDLQSYEPKSLKS-----IQNVSHLILHMKQHILLLEIF----VDVTSSVECLE 228 (353)
T ss_dssp CCEE----CTTTTTTCCEEEEEEEEETTCCEECTTTTTT-----CSEEEEEEEECSCSTTHHHHH----HHHTTTEEEEE
T ss_pred cccc----CHHHccCCCCCCEEECCCCCcCccCHHHHhc-----cccCCeecCCCCccccchhhh----hhhcccccEEE
Confidence 6653 1456788999999999999998765555543 689999999999997654333 33359999999
Q ss_pred ccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 419 LAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 419 Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
|++|.++......+.. .. .+..++.++++++.+++.+...++..+..+++|+.|+|++|+|+.
T Consensus 229 L~~n~l~~~~~~~l~~-~~-~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 229 LRDTDLDTFHFSELST-GE-TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp EESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred CCCCcccccccccccc-cc-ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 9999998654333332 22 578899999999999999999999999999999999999999985
No 58
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-22 Score=200.49 Aligned_cols=247 Identities=23% Similarity=0.234 Sum_probs=178.0
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
..++.|.+.++.+++.....+...+.. ++|++|+|++|.+++..+..+.. ..+++|++|+|++|.++......-...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHH
Confidence 478899999999988777766665543 56999999999887643322210 556899999999999885322111134
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+..+++|++|++++|+++.. .+..+..+++|++|+|++|.+...........+..+++|++|+|++|.++....
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-- 214 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG-- 214 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH--
T ss_pred hhhccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH--
Confidence 45789999999999999754 335577899999999999998753322222334678999999999999974322
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
.+..+...+++|++|+|++|.+++..+..+..+ ...++|++|+|++|.|+. ++..+ .++|++|+|++|+|+
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~~~~~L~~L~Ls~N~l~~-----lp~~~---~~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-MWSSALNSLNLSFAGLEQ-----VPKGL---PAKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-CCCTTCCCEECCSSCCCS-----CCSCC---CSCCSCEECCSCCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-cCcCcCCEEECCCCCCCc-----hhhhh---cCCCCEEECCCCcCC
Confidence 222222336999999999999987643332221 112699999999999983 34332 379999999999999
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
.. + .+..+++|+.|+|++|+|++.|
T Consensus 286 ~~-----~-~~~~l~~L~~L~L~~N~l~~~g 310 (310)
T 4glp_A 286 RA-----P-QPDELPEVDNLTLDGNPFLVPG 310 (310)
T ss_dssp SC-----C-CTTSCCCCSCEECSSTTTSCCC
T ss_pred CC-----c-hhhhCCCccEEECcCCCCCCCC
Confidence 73 2 2467899999999999998864
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.5e-22 Score=200.91 Aligned_cols=221 Identities=19% Similarity=0.207 Sum_probs=178.3
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
++|++|+|++|.++..... .+..+++|++|+|++|.+++... +..+++|++|++++|.++.
T Consensus 34 ~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~--------- 94 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQE--------- 94 (317)
T ss_dssp GGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEEE---------
T ss_pred CCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCcccc---------
Confidence 5899999999999876443 35666999999999999976421 5677999999999999875
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+...++|++|++++|+++... ...+++|++|++++|.++... +..+..+++|+.|++++|.++...+..
T Consensus 95 l~~~~~L~~L~l~~n~l~~~~-------~~~~~~L~~L~l~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (317)
T 3o53_A 95 LLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (317)
T ss_dssp EEECTTCCEEECCSSCCSEEE-------ECCCSSCEEEECCSSCCCSGG----GBCTGGGSSEEEEECTTSCCCEEEGGG
T ss_pred ccCCCCcCEEECCCCccCCcC-------ccccCCCCEEECCCCCCCCcc----chhhhccCCCCEEECCCCCCCcccHHH
Confidence 234589999999999998642 235789999999999998742 446777899999999999999765554
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+.. .+++|++|++++|.++.... ...+++|++|+|++|.++.. +..+. .+++|++|+|++|.|+
T Consensus 164 ~~~----~l~~L~~L~L~~N~l~~~~~------~~~l~~L~~L~Ls~N~l~~l-----~~~~~-~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 164 LAA----SSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLAFM-----GPEFQ-SAAGVTWISLRNNKLV 227 (317)
T ss_dssp GGG----GTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCCEE-----CGGGG-GGTTCSEEECTTSCCC
T ss_pred Hhh----ccCcCCEEECCCCcCccccc------ccccccCCEEECCCCcCCcc-----hhhhc-ccCcccEEECcCCccc
Confidence 432 35899999999999987521 22368999999999999853 33455 7899999999999999
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCCChhHH
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFIPDEGI 486 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~ 486 (541)
. ++..+..+++|+.|++++|++....+
T Consensus 228 ~-----l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 228 L-----IEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp E-----ECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred c-----hhhHhhcCCCCCEEEccCCCccCcCH
Confidence 6 56667888999999999999994433
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.1e-22 Score=199.31 Aligned_cols=213 Identities=24% Similarity=0.285 Sum_probs=145.2
Q ss_pred cCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhc-----CCCccEEEecCCCCChhH
Q 009168 241 SQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKH-----SPALEDFRCSSTRIGAEG 315 (541)
Q Consensus 241 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-----~~~L~~L~L~~n~i~~~~ 315 (541)
.+++|++|+|++|.+++..+..+. +..+++|++|+|++|.+... +..+.. .++|++|++++|+++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~-----~~~~~~l~~~~~~~L~~L~L~~N~l~~~- 164 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLL--EATGPDLNILNLRNVSWATR-----DAWLAELQQWLKPGLKVLSIAQAHSLNF- 164 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSS--SCCSCCCSEEEEESCBCSSS-----SSHHHHHHTTCCTTCCEEEEESCSCCCC-
T ss_pred CcCCccEEEccCCcccchhHHHHH--HhcCCCccEEEccCCCCcch-----hHHHHHHHHhhcCCCcEEEeeCCCCccc-
Confidence 357788888888777643222111 25567888888888877753 122222 27888888888888754
Q ss_pred HHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc--ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecC
Q 009168 316 GIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL--PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAG 393 (541)
Q Consensus 316 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~ 393 (541)
.+..+..+++|++|+|++|.+.... .++..+ ..+++|++|+|++|.++... .+...+...+++|+.|++++
T Consensus 165 ---~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~~l~~L~~L~Ls~ 237 (312)
T 1wwl_A 165 ---SCEQVRVFPALSTLDLSDNPELGER--GLISALCPLKFPTLQVLALRNAGMETPS--GVCSALAAARVQLQGLDLSH 237 (312)
T ss_dssp ---CTTTCCCCSSCCEEECCSCTTCHHH--HHHHHSCTTSCTTCCEEECTTSCCCCHH--HHHHHHHHTTCCCSEEECTT
T ss_pred ---hHHHhccCCCCCEEECCCCCcCcch--HHHHHHHhccCCCCCEEECCCCcCcchH--HHHHHHHhcCCCCCEEECCC
Confidence 2345778888999999998876431 123334 77889999999999887422 12222323468999999999
Q ss_pred CCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccE
Q 009168 394 NDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKM 473 (541)
Q Consensus 394 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~ 473 (541)
|.+++..+.. .+...++|++|+|++|.|+ .++..+. ++|++|+|++|+|+.. +. +..+++|++
T Consensus 238 N~l~~~~~~~---~~~~l~~L~~L~Ls~N~l~-----~ip~~~~---~~L~~L~Ls~N~l~~~-----p~-~~~l~~L~~ 300 (312)
T 1wwl_A 238 NSLRDAAGAP---SCDWPSQLNSLNLSFTGLK-----QVPKGLP---AKLSVLDLSYNRLDRN-----PS-PDELPQVGN 300 (312)
T ss_dssp SCCCSSCCCS---CCCCCTTCCEEECTTSCCS-----SCCSSCC---SEEEEEECCSSCCCSC-----CC-TTTSCEEEE
T ss_pred CcCCcccchh---hhhhcCCCCEEECCCCccC-----hhhhhcc---CCceEEECCCCCCCCC-----hh-HhhCCCCCE
Confidence 9888744211 1223478999999999988 3333222 6899999999999884 33 678899999
Q ss_pred EEecCCCCChhH
Q 009168 474 LNINGNFIPDEG 485 (541)
Q Consensus 474 L~L~~N~i~~~g 485 (541)
|+|++|+|++.|
T Consensus 301 L~L~~N~l~~~~ 312 (312)
T 1wwl_A 301 LSLKGNPFLDSE 312 (312)
T ss_dssp EECTTCTTTCCC
T ss_pred EeccCCCCCCCC
Confidence 999999998753
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.83 E-value=1.7e-23 Score=206.66 Aligned_cols=243 Identities=17% Similarity=0.179 Sum_probs=154.2
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHH--HHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEA--AQAILELIPSTEKLKVLHFHNNMTGDEGAVAISE 293 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 293 (541)
+|++|+|++|.++.... ..+..+++|++|+|++|.++..+ +..+. .+++|++|++++|.+.. ++.
T Consensus 29 ~l~~L~L~~n~l~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L~~L~Ls~n~i~~-----l~~ 95 (306)
T 2z66_A 29 SATRLELESNKLQSLPH----GVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVIT-----MSS 95 (306)
T ss_dssp TCCEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCCCEEECCSCSEEE-----EEE
T ss_pred CCCEEECCCCccCccCH----hHhhccccCCEEECCCCccCcccCcccccc----cccccCEEECCCCcccc-----Chh
Confidence 56666666666653221 12344566777777776665321 11221 23677777777776654 444
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChh-HH
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDE-GA 372 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~ 372 (541)
.+..+++|++|++++|+++.... ...+..+++|++|++++|.++.. .+..+..+++|++|++++|.+++. .+
T Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA----FNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC----STTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred hcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc----chhhcccCcCCCEEECCCCccccccch
Confidence 45667777777777777654311 12456777888888888877653 245566777888888888877642 22
Q ss_pred HHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCC
Q 009168 373 EALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNS 452 (541)
Q Consensus 373 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~ 452 (541)
..+. .+++|+.|++++|.+++..+.. +..+++|++|+|++|.++..... .+. .+++|++|+|++|.
T Consensus 169 ~~~~-----~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~~----~~~-~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 169 DIFT-----ELRNLTFLDLSQCQLEQLSPTA----FNSLSSLQVLNMSHNNFFSLDTF----PYK-CLNSLQVLDYSLNH 234 (306)
T ss_dssp SCCT-----TCTTCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTSCCSBCCSG----GGT-TCTTCCEEECTTSC
T ss_pred hHHh-----hCcCCCEEECCCCCcCCcCHHH----hcCCCCCCEEECCCCccCccChh----hcc-CcccCCEeECCCCC
Confidence 2222 2578888888888887654433 34458888889988888753322 234 68899999999999
Q ss_pred CChHHHHHHHHHHhcCC-CccEEEecCCCCCh-hHHHHHHHHHhcC
Q 009168 453 MKRAGARLLAQVAVNKP-GLKMLNINGNFIPD-EGIDEVKEILKHS 496 (541)
Q Consensus 453 i~~~~~~~l~~~l~~~~-~L~~L~L~~N~i~~-~g~~~l~~~l~~~ 496 (541)
|+.. .+..+..++ +|++|+|++|+++. ..+..+.+.+++.
T Consensus 235 l~~~----~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 235 IMTS----KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCBC----SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred Cccc----CHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 8876 444455664 79999999999864 3455555555544
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=7.8e-21 Score=203.92 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=210.2
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
..++.++++++.+..+.. .+ + +++++|+|++|.+..-.. ..++|++|+|++|.++..+.
T Consensus 40 ~~l~~L~ls~n~L~~lp~--------~l--~-~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPD--------CL--P-AHITTLVIPDNNLTSLPA---------LPPELRTLEVSGNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCSCCCS--------CC--C-TTCSEEEECSCCCSCCCC---------CCTTCCEEEECSCCCSCCCC-
T ss_pred CCCcEEEecCCCcCccCh--------hh--C-CCCcEEEecCCCCCCCCC---------cCCCCCEEEcCCCcCCcCCC-
Confidence 357899999998653322 22 1 689999999998874211 23689999999999887653
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHN 280 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 280 (541)
..++|++|+|++|.++.... ..++|+.|++++|.++... ...++|++|++++
T Consensus 99 ------------~l~~L~~L~Ls~N~l~~l~~--------~l~~L~~L~L~~N~l~~lp--------~~l~~L~~L~Ls~ 150 (622)
T 3g06_A 99 ------------LPPGLLELSIFSNPLTHLPA--------LPSGLCKLWIFGNQLTSLP--------VLPPGLQELSVSD 150 (622)
T ss_dssp ------------CCTTCCEEEECSCCCCCCCC--------CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS
T ss_pred ------------CCCCCCEEECcCCcCCCCCC--------CCCCcCEEECCCCCCCcCC--------CCCCCCCEEECcC
Confidence 12589999999999986321 4578999999999987521 2248999999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEE
Q 009168 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEV 360 (541)
Q Consensus 281 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 360 (541)
|.++. ++. ..++|+.|++++|.++.. + ..+++|+.|++++|.++. ++. ..++|+.|
T Consensus 151 N~l~~-----l~~---~~~~L~~L~L~~N~l~~l-----~---~~~~~L~~L~Ls~N~l~~-----l~~---~~~~L~~L 206 (622)
T 3g06_A 151 NQLAS-----LPA---LPSELCKLWAYNNQLTSL-----P---MLPSGLQELSVSDNQLAS-----LPT---LPSELYKL 206 (622)
T ss_dssp SCCSC-----CCC---CCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSC-----CCC---CCTTCCEE
T ss_pred CcCCC-----cCC---ccCCCCEEECCCCCCCCC-----c---ccCCCCcEEECCCCCCCC-----CCC---ccchhhEE
Confidence 99876 332 357899999999999853 2 467899999999999886 222 34789999
Q ss_pred EcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC
Q 009168 361 YLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH 440 (541)
Q Consensus 361 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 440 (541)
++++|.++... ..+++|+.|++++|.|++.. ..+++|++|+|++|.|+. ++. .+
T Consensus 207 ~L~~N~l~~l~---------~~~~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~Ls~N~L~~-----lp~----~~ 260 (622)
T 3g06_A 207 WAYNNRLTSLP---------ALPSGLKELIVSGNRLTSLP--------VLPSELKELMVSGNRLTS-----LPM----LP 260 (622)
T ss_dssp ECCSSCCSSCC---------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC-----CCC----CC
T ss_pred ECcCCcccccC---------CCCCCCCEEEccCCccCcCC--------CCCCcCcEEECCCCCCCc-----CCc----cc
Confidence 99999988522 12478999999999998632 345889999999999983 332 47
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhc
Q 009168 441 GQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKH 495 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~ 495 (541)
++|+.|+|++|.|+. ++..+.++++|+.|+|++|+++......+......
T Consensus 261 ~~L~~L~Ls~N~L~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~ 310 (622)
T 3g06_A 261 SGLLSLSVYRNQLTR-----LPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310 (622)
T ss_dssp TTCCEEECCSSCCCS-----CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred ccCcEEeCCCCCCCc-----CCHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence 899999999999995 66778899999999999999999887777766543
No 63
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=6.9e-24 Score=210.01 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=182.7
Q ss_pred CeeEEEcCCCCCCh--hHHHHHHHHhhcCCCccEEEecC-CCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH
Q 009168 216 QLRYLNLSHNALGE--KGVRAFGALLKSQNNLEELHLMN-DGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS 292 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 292 (541)
+++.|+|++|.++. .. +..+..+++|++|+|++ |.+.+..+.. +..+++|++|++++|.+... ++
T Consensus 51 ~l~~L~L~~~~l~~~~~~----~~~l~~l~~L~~L~L~~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~----~p 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPI----PSSLANLPYLNFLYIGGINNLVGPIPPA----IAKLTQLHYLYITHTNVSGA----IP 118 (313)
T ss_dssp CEEEEEEECCCCSSCEEC----CGGGGGCTTCSEEEEEEETTEESCCCGG----GGGCTTCSEEEEEEECCEEE----CC
T ss_pred eEEEEECCCCCccCCccc----ChhHhCCCCCCeeeCCCCCcccccCChh----HhcCCCCCEEECcCCeeCCc----CC
Confidence 78888888888874 32 23466779999999995 8776543333 45569999999999998742 56
Q ss_pred HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCC-CCCEEEcccCCCChhH
Q 009168 293 EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFP-DLTEVYLSYLNLEDEG 371 (541)
Q Consensus 293 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~~ 371 (541)
..+..+++|++|++++|.++.. ++..+..+++|++|++++|.++.. ++..+..++ +|+.|++++|.+++..
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~~ 190 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISRNRLTGKI 190 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred HHHhCCCCCCEEeCCCCccCCc----CChHHhcCCCCCeEECcCCcccCc----CCHHHhhhhhcCcEEECcCCeeeccC
Confidence 7788999999999999998753 556688999999999999999854 467778887 9999999999998666
Q ss_pred HHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCC
Q 009168 372 AEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTN 451 (541)
Q Consensus 372 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n 451 (541)
+..+.. + +|+.|++++|.+++..+.. +..+++|++|+|++|.++... ..+. .+++|++|+|++|
T Consensus 191 ~~~~~~-----l-~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~-----~~~~-~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 191 PPTFAN-----L-NLAFVDLSRNMLEGDASVL----FGSDKNTQKIHLAKNSLAFDL-----GKVG-LSKNLNGLDLRNN 254 (313)
T ss_dssp CGGGGG-----C-CCSEEECCSSEEEECCGGG----CCTTSCCSEEECCSSEECCBG-----GGCC-CCTTCCEEECCSS
T ss_pred ChHHhC-----C-cccEEECcCCcccCcCCHH----HhcCCCCCEEECCCCceeeec-----Cccc-ccCCCCEEECcCC
Confidence 655543 3 4999999999988655443 445599999999999987422 2244 7899999999999
Q ss_pred CCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 452 SMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 452 ~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
.|+.. ++..+..+++|++|+|++|++++
T Consensus 255 ~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 255 RIYGT----LPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp CCEEC----CCGGGGGCTTCCEEECCSSEEEE
T ss_pred cccCc----CChHHhcCcCCCEEECcCCcccc
Confidence 99865 67778899999999999999874
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.7e-21 Score=202.74 Aligned_cols=283 Identities=18% Similarity=0.165 Sum_probs=209.5
Q ss_pred hhhccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCC
Q 009168 117 KATAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGR 196 (541)
Q Consensus 117 ~~~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~ 196 (541)
....+.++.|+++++.+.-+. .+... +++++|+|++|.+.... +.. .++|++|+|++|.+..
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~---------~l~~l-~~L~~L~Ls~n~l~~~~-------~~~-l~~L~~L~Ls~N~l~~ 99 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT---------GIEKL-TGLTKLICTSNNITTLD-------LSQ-NTNLTYLACDSNKLTN 99 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT---------TGGGC-TTCSEEECCSSCCSCCC-------CTT-CTTCSEEECCSSCCSC
T ss_pred hhHcCCCCEEEccCCCcccCh---------hhccc-CCCCEEEccCCcCCeEc-------ccc-CCCCCEEECcCCCCce
Confidence 344578999999999865331 22223 79999999999988631 111 1699999999999887
Q ss_pred chHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEE
Q 009168 197 PEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVL 276 (541)
Q Consensus 197 ~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L 276 (541)
.+ +. ..++|++|++++|.++... +..+++|++|++++|.+++. -+..+++|++|
T Consensus 100 ~~---~~---------~l~~L~~L~L~~N~l~~l~-------~~~l~~L~~L~l~~N~l~~l-------~l~~l~~L~~L 153 (457)
T 3bz5_A 100 LD---VT---------PLTKLTYLNCDTNKLTKLD-------VSQNPLLTYLNCARNTLTEI-------DVSHNTQLTEL 153 (457)
T ss_dssp CC---CT---------TCTTCCEEECCSSCCSCCC-------CTTCTTCCEEECTTSCCSCC-------CCTTCTTCCEE
T ss_pred ee---cC---------CCCcCCEEECCCCcCCeec-------CCCCCcCCEEECCCCcccee-------ccccCCcCCEE
Confidence 63 11 2269999999999998641 67789999999999999873 15678999999
Q ss_pred EcCCC-CCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCC
Q 009168 277 HFHNN-MTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFP 355 (541)
Q Consensus 277 ~Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 355 (541)
++++| .++. + .+..+++|++|++++|+++.. + +..+++|+.|++++|.++.. .+..++
T Consensus 154 ~l~~n~~~~~-----~--~~~~l~~L~~L~ls~n~l~~l-----~--l~~l~~L~~L~l~~N~l~~~-------~l~~l~ 212 (457)
T 3bz5_A 154 DCHLNKKITK-----L--DVTPQTQLTTLDCSFNKITEL-----D--VSQNKLLNRLNCDTNNITKL-------DLNQNI 212 (457)
T ss_dssp ECTTCSCCCC-----C--CCTTCTTCCEEECCSSCCCCC-----C--CTTCTTCCEEECCSSCCSCC-------CCTTCT
T ss_pred ECCCCCcccc-----c--ccccCCcCCEEECCCCcccee-----c--cccCCCCCEEECcCCcCCee-------ccccCC
Confidence 99999 4554 2 367789999999999999863 2 77899999999999999873 378899
Q ss_pred CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHH-----
Q 009168 356 DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAI----- 430 (541)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~----- 430 (541)
+|+.|++++|.+++. + + ..+++|+.|++++|.+++.. +..+++|+.|++++|.+....+.
T Consensus 213 ~L~~L~Ls~N~l~~i-p--~-----~~l~~L~~L~l~~N~l~~~~-------~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 213 QLTFLDCSSNKLTEI-D--V-----TPLTQLTYFDCSVNPLTELD-------VSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp TCSEEECCSSCCSCC-C--C-----TTCTTCSEEECCSSCCSCCC-------CTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CCCEEECcCCccccc-C--c-----cccCCCCEEEeeCCcCCCcC-------HHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 999999999999873 2 2 23699999999999998753 23346666655555544321000
Q ss_pred -HHHHHhhhcCCCccEEEccCCCCChHH------HHHHHHHHhcCCCccEEEecCCCCChh
Q 009168 431 -LIGKSLEEGHGQLIEIDLSTNSMKRAG------ARLLAQVAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 431 -~l~~~l~~~~~~L~~L~Ls~n~i~~~~------~~~l~~~l~~~~~L~~L~L~~N~i~~~ 484 (541)
.++ .. .+++|+.|++++|.+...- ...+ .+..+++|++|++++|+++.-
T Consensus 278 ~~~~--~~-~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L--~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 278 IYFQ--AE-GCRKIKELDVTHNTQLYLLDCQAAGITEL--DLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp CEEE--CT-TCTTCCCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCCEEECTTCCCSCC
T ss_pred Cccc--cc-ccccCCEEECCCCcccceeccCCCcceEe--chhhcccCCEEECCCCccccc
Confidence 111 12 5799999999999643210 0001 156778999999999999874
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=4.9e-23 Score=203.30 Aligned_cols=266 Identities=19% Similarity=0.188 Sum_probs=175.9
Q ss_pred ceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHH
Q 009168 155 YTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRA 234 (541)
Q Consensus 155 l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~ 234 (541)
.+.++.+++.+.. ++..++++|++|+|++|.++..+...+..+ ++|++|+|++|.++..+..
T Consensus 9 ~~~l~c~~~~l~~--------ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l---------~~L~~L~L~~n~l~~~~~~- 70 (306)
T 2z66_A 9 GTEIRCNSKGLTS--------VPTGIPSSATRLELESNKLQSLPHGVFDKL---------TQLTKLSLSSNGLSFKGCC- 70 (306)
T ss_dssp TTEEECCSSCCSS--------CCSCCCTTCCEEECCSSCCCCCCTTTTTTC---------TTCSEEECCSSCCCEEEEE-
T ss_pred CCEEEcCCCCccc--------CCCCCCCCCCEEECCCCccCccCHhHhhcc---------ccCCEEECCCCccCcccCc-
Confidence 3456666655542 111223577888888877776553322222 4788888888888743210
Q ss_pred HHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChh
Q 009168 235 FGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAE 314 (541)
Q Consensus 235 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 314 (541)
...+..+++|++|+|++|.+... ...+..+++|++|++++|.+..... ...+..+++|++|++++|.+...
T Consensus 71 -~~~~~~~~~L~~L~Ls~n~i~~l-----~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~l~~~ 141 (306)
T 2z66_A 71 -SQSDFGTTSLKYLDLSFNGVITM-----SSNFLGLEQLEHLDFQHSNLKQMSE---FSVFLSLRNLIYLDISHTHTRVA 141 (306)
T ss_dssp -EHHHHSCSCCCEEECCSCSEEEE-----EEEEETCTTCCEEECTTSEEESSTT---TTTTTTCTTCCEEECTTSCCEEC
T ss_pred -ccccccccccCEEECCCCccccC-----hhhcCCCCCCCEEECCCCccccccc---chhhhhccCCCEEECCCCcCCcc
Confidence 01123457888888888877642 2224566888889998887765210 13567788899999999888653
Q ss_pred HHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCC
Q 009168 315 GGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGN 394 (541)
Q Consensus 315 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n 394 (541)
.+..+..+++|++|++++|.++... ++..+..+++|+.|++++|.+++..+..+.. +++|+.|++++|
T Consensus 142 ----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~L~~N 209 (306)
T 2z66_A 142 ----FNGIFNGLSSLEVLKMAGNSFQENF---LPDIFTELRNLTFLDLSQCQLEQLSPTAFNS-----LSSLQVLNMSHN 209 (306)
T ss_dssp ----STTTTTTCTTCCEEECTTCEEGGGE---ECSCCTTCTTCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTS
T ss_pred ----chhhcccCcCCCEEECCCCcccccc---chhHHhhCcCCCEEECCCCCcCCcCHHHhcC-----CCCCCEEECCCC
Confidence 3445677889999999999876411 3566778889999999999888755544432 588999999999
Q ss_pred CCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC-CCccEEEccCCCCChH-HHHHHHHHHhcC
Q 009168 395 DITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH-GQLIEIDLSTNSMKRA-GARLLAQVAVNK 468 (541)
Q Consensus 395 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~-~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~ 468 (541)
.+++..... +..+++|++|+|++|.++...+ ..+. .+ ++|++|+|++|.++.. ....+...+...
T Consensus 210 ~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~----~~~~-~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 210 NFFSLDTFP----YKCLNSLQVLDYSLNHIMTSKK----QELQ-HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCSBCCSGG----GTTCTTCCEEECTTSCCCBCSS----SSCC-CCCTTCCEEECTTCCEECSGGGHHHHHHHHHT
T ss_pred ccCccChhh----ccCcccCCEeECCCCCCcccCH----HHHH-hhhccCCEEEccCCCeecccChHHHHHHHHhh
Confidence 888654333 3455899999999999886432 2333 45 4899999999988643 233344554443
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.7e-22 Score=210.65 Aligned_cols=235 Identities=23% Similarity=0.207 Sum_probs=150.2
Q ss_pred CccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHH
Q 009168 183 QLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQA 262 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 262 (541)
+|++|+|++|.++..++..+..+ ++|++|+|++|.++.... +..+++|++|+|++|.+++.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l---------~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~l---- 95 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF---------TKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQEL---- 95 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC---------TTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEEE----
T ss_pred CccEEEeeCCcCCCCCHHHHhCC---------CCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCCC----
Confidence 67777777777766554333222 477777777777765321 55667777888877776642
Q ss_pred HHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCch
Q 009168 263 ILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVE 342 (541)
Q Consensus 263 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 342 (541)
...++|++|++++|.+... + ...+++|+.|++++|.++.. .+..+..+++|+.|+|++|.++..
T Consensus 96 -----~~~~~L~~L~L~~N~l~~~-----~--~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (487)
T 3oja_A 96 -----LVGPSIETLHAANNNISRV-----S--CSRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTV 159 (487)
T ss_dssp -----EECTTCCEEECCSSCCCCE-----E--ECCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEE
T ss_pred -----CCCCCcCEEECcCCcCCCC-----C--ccccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCc
Confidence 2336777888887777652 1 12356778888888877753 233456677788888888877764
Q ss_pred HHHHHHHhcc-cCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccC
Q 009168 343 AGVALSEVLP-AFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAE 421 (541)
Q Consensus 343 ~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 421 (541)
. +..+. .+++|+.|+|++|.+++... . ..+++|+.|+|++|.|++..+. +..+++|+.|+|++
T Consensus 160 ~----~~~l~~~l~~L~~L~Ls~N~l~~~~~--~-----~~l~~L~~L~Ls~N~l~~~~~~-----~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 160 N----FAELAASSDTLEHLNLQYNFIYDVKG--Q-----VVFAKLKTLDLSSNKLAFMGPE-----FQSAAGVTWISLRN 223 (487)
T ss_dssp E----GGGGGGGTTTCCEEECTTSCCCEEEC--C-----CCCTTCCEEECCSSCCCEECGG-----GGGGTTCSEEECTT
T ss_pred C----hHHHhhhCCcccEEecCCCccccccc--c-----ccCCCCCEEECCCCCCCCCCHh-----HcCCCCccEEEecC
Confidence 2 33343 56778888888887765411 1 1257788888888877764332 33447788888888
Q ss_pred CCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEec
Q 009168 422 NELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNIN 477 (541)
Q Consensus 422 n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 477 (541)
|.|+. ++..+. .+++|+.|++++|.+.... ++..+..++.|+.++++
T Consensus 224 N~l~~-----lp~~l~-~l~~L~~L~l~~N~l~c~~---~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 224 NKLVL-----IEKALR-FSQNLEHFDLRGNGFHCGT---LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SCCCE-----ECTTCC-CCTTCCEEECTTCCBCHHH---HHHHHTTCHHHHHHHHH
T ss_pred CcCcc-----cchhhc-cCCCCCEEEcCCCCCcCcc---hHHHHHhCCCCcEEecc
Confidence 87773 344455 6777888888888777332 44555555666655553
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1e-22 Score=221.28 Aligned_cols=128 Identities=15% Similarity=0.134 Sum_probs=89.4
Q ss_pred cCCCCCEEEcccCCCChh-HHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHH
Q 009168 353 AFPDLTEVYLSYLNLEDE-GAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAIL 431 (541)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 431 (541)
.++.|+.|++++|.+... .+..+ ..+++|+.|+|++|.|++..+..+ ..+++|++|+|++|.|+...
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~~~-----~~l~~L~~L~Ls~N~L~~l~~~~f----~~l~~L~~L~Ls~N~l~~l~--- 534 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPDIF-----TELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNNFFSLD--- 534 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCC-----TTCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTSCCCBCC---
T ss_pred cchhhhhhhhhhcccccccCchhh-----hhccccCEEECCCCccCCcChHHH----cCCCCCCEEECCCCcCCCCC---
Confidence 345566666666643221 11112 236899999999999987665544 44599999999999998532
Q ss_pred HHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcC-CCccEEEecCCCCCh-hHHHHHHHHHhcCcc
Q 009168 432 IGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK-PGLKMLNINGNFIPD-EGIDEVKEILKHSLD 498 (541)
Q Consensus 432 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~-~g~~~l~~~l~~~~~ 498 (541)
+..+. .+++|++|+|++|+|+.. .+..+... ++|++|+|++|++.- -.+..+.+-++....
T Consensus 535 -~~~~~-~l~~L~~L~Ls~N~l~~~----~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~ 597 (635)
T 4g8a_A 535 -TFPYK-CLNSLQVLDYSLNHIMTS----KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 597 (635)
T ss_dssp -CGGGT-TCTTCCEEECTTSCCCBC----CSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTT
T ss_pred -hhHHh-CCCCCCEEECCCCcCCCC----CHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCC
Confidence 22344 789999999999999986 45556666 579999999999874 346666666655443
No 68
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.81 E-value=4.7e-19 Score=160.90 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=130.8
Q ss_pred HHHHHHhcccCCCCCEEEcccC-CCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC
Q 009168 344 GVALSEVLPAFPDLTEVYLSYL-NLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN 422 (541)
Q Consensus 344 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 422 (541)
...+...+..+++|++|+|++| .+++.+...++.++..+ ++|++|+|++|.|++.+...++.++..+++|++|+|++|
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~-~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhC-CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4557777888888999999888 88888888888888774 889999999999999998899999998999999999999
Q ss_pred CCChhHHHHHHHHhhhcCCCccEEEc--cCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcCc
Q 009168 423 ELQDEGAILIGKSLEEGHGQLIEIDL--STNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSL 497 (541)
Q Consensus 423 ~l~~~g~~~l~~~l~~~~~~L~~L~L--s~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~ 497 (541)
.|++.|+..++.++. .+++|++|+| ++|.|++.|+..++.++..+++|++|+|++|.|++.|. +.++++++.
T Consensus 104 ~i~~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 104 FISGSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp CCCHHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 999999999999998 8899999999 88999999999999999999999999999999988874 666666553
No 69
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=1.8e-22 Score=201.06 Aligned_cols=235 Identities=16% Similarity=0.149 Sum_probs=121.0
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
.+++.|+|++|.+...+.. +..+ ++|++|+|++|.++. ++..+..+++|++|+|++|.++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~-l~~l---------~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~---- 141 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQ-AFRL---------SHLQHMTIDAAGLME-----LPDTMQQFAGLETLTLARNPLRA---- 141 (328)
T ss_dssp TTCCEEEEESSCCSSCCSC-GGGG---------TTCSEEEEESSCCCC-----CCSCGGGGTTCSEEEEESCCCCC----
T ss_pred cceeEEEccCCCchhcChh-hhhC---------CCCCEEECCCCCccc-----hhHHHhccCCCCEEECCCCcccc----
Confidence 5677777777666654421 1111 356666666666552 12223444556666666555542
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCc
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGV 341 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 341 (541)
+...+..+++|++|++++|.+... ++..+.. .. +...+..+++|++|+|++|.++.
T Consensus 142 -lp~~l~~l~~L~~L~L~~n~~~~~----~p~~~~~------~~-------------~~~~~~~l~~L~~L~L~~n~l~~ 197 (328)
T 4fcg_A 142 -LPASIASLNRLRELSIRACPELTE----LPEPLAS------TD-------------ASGEHQGLVNLQSLRLEWTGIRS 197 (328)
T ss_dssp -CCGGGGGCTTCCEEEEEEETTCCC----CCSCSEE------EC--------------CCCEEESTTCCEEEEEEECCCC
T ss_pred -CcHHHhcCcCCCEEECCCCCCccc----cChhHhh------cc-------------chhhhccCCCCCEEECcCCCcCc
Confidence 111233345555555555432210 1211111 00 00012235566666666666553
Q ss_pred hHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccC
Q 009168 342 EAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAE 421 (541)
Q Consensus 342 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 421 (541)
++..+..+++|++|+|++|.++.. +..+. .+++|+.|+|++|.+.+..+.. +..+++|++|+|++
T Consensus 198 -----lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~-----~l~~L~~L~Ls~n~~~~~~p~~----~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 198 -----LPASIANLQNLKSLKIRNSPLSAL-GPAIH-----HLPKLEELDLRGCTALRNYPPI----FGGRAPLKRLILKD 262 (328)
T ss_dssp -----CCGGGGGCTTCCEEEEESSCCCCC-CGGGG-----GCTTCCEEECTTCTTCCBCCCC----TTCCCCCCEEECTT
T ss_pred -----chHhhcCCCCCCEEEccCCCCCcC-chhhc-----cCCCCCEEECcCCcchhhhHHH----hcCCCCCCEEECCC
Confidence 344555566666666666666532 11221 2466666666666655443322 33346677777777
Q ss_pred CCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 422 NELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 422 n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
|.+.. .++..+. .+++|++|+|++|.+... ++..+.++++|+.+++..|.+..
T Consensus 263 n~~~~----~~p~~~~-~l~~L~~L~L~~n~~~~~----iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 263 CSNLL----TLPLDIH-RLTQLEKLDLRGCVNLSR----LPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CTTCC----BCCTTGG-GCTTCCEEECTTCTTCCC----CCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCchh----hcchhhh-cCCCCCEEeCCCCCchhh----ccHHHhhccCceEEeCCHHHHHH
Confidence 65543 2333344 677777777777766665 66666777777777777665543
No 70
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=8.6e-22 Score=204.55 Aligned_cols=238 Identities=21% Similarity=0.213 Sum_probs=147.1
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EI 294 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~ 294 (541)
+++.|+|++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|+|++|.++. ++ ..
T Consensus 65 ~l~~L~L~~n~i~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~-----~~~~~ 131 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKV----NSFKHLRHLEILQLSRNHIRTIEI----GAFNGLANLNTLELFDNRLTT-----IPNGA 131 (440)
T ss_dssp TCSEEECCSCCCCEECT----TTTSSCSSCCEEECCSSCCCEECG----GGGTTCSSCCEEECCSSCCSS-----CCTTT
T ss_pred CCcEEEccCCcCCeeCH----HHhhCCCCCCEEECCCCcCCccCh----hhccCCccCCEEECCCCcCCe-----eCHhH
Confidence 56666666666654332 224455667777777776654322 223445677777777776664 32 24
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCC-CCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNM-FGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
+..+++|++|+|++|++.... ...+..+++|++|+|++|. ++... ...+..+++|+.|+|++|.++...
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~----~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~-- 201 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIP----SYAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLREIP-- 201 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEEC----TTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred hhccccCceeeCCCCcccccC----HHHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCcccc--
Confidence 566677777777777776431 2245667777777777743 44321 234666777888888887776421
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
.+ ..+++|+.|+|++|.|+...+.. +..+++|++|+|++|.|+.... .++. .+++|++|+|++|.|
T Consensus 202 ~~-----~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 202 NL-----TPLIKLDELDLSGNHLSAIRPGS----FQGLMHLQKLWMIQSQIQVIER----NAFD-NLQSLVEINLAHNNL 267 (440)
T ss_dssp CC-----TTCSSCCEEECTTSCCCEECTTT----TTTCTTCCEEECTTCCCCEECT----TSST-TCTTCCEEECTTSCC
T ss_pred cc-----CCCcccCEEECCCCccCccChhh----hccCccCCEEECCCCceeEECh----hhhc-CCCCCCEEECCCCCC
Confidence 11 23577888888888877654433 3344788888888888775432 2333 678888888888888
Q ss_pred ChHHHHHHHHHHhcCCCccEEEecCCCCCh-hHHHHHHHHHh
Q 009168 454 KRAGARLLAQVAVNKPGLKMLNINGNFIPD-EGIDEVKEILK 494 (541)
Q Consensus 454 ~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~-~g~~~l~~~l~ 494 (541)
+.. ....+..+++|+.|+|++|++.- -.+..+..-++
T Consensus 268 ~~~----~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 268 TLL----PHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CCC----CTTTTSSCTTCCEEECCSSCEECSSTTHHHHHHHH
T ss_pred Ccc----ChhHhccccCCCEEEcCCCCccCCCCchHHHHHHH
Confidence 764 33445667888888888888653 33444444333
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.1e-21 Score=204.34 Aligned_cols=227 Identities=19% Similarity=0.216 Sum_probs=145.5
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EI 294 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~ 294 (541)
+|++|+|++|.|+..... .+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+.. ++ ..
T Consensus 76 ~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~-----~~~~~ 142 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTV-----IPSGA 142 (452)
T ss_dssp TCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSB-----CCTTT
T ss_pred CccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCc-----cChhh
Confidence 566666666666543222 23445667777777776664322 223445677777777777664 22 33
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCC-CCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDN-MFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
+..+++|++|+|++|++... ....+..+++|+.|+|++| .++... ...+..+++|+.|+|++|.++...
T Consensus 143 ~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~~~~-- 212 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIESI----PSYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNIKDMP-- 212 (452)
T ss_dssp SSSCTTCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred hcccCCCCEEECCCCCccee----CHhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcccccc--
Confidence 55677777777777777643 1224567777888888774 344321 234666778888888888776531
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
.+ ..+++|+.|+|++|.+++..+.. +..+++|+.|+|++|.++.... .++. .+++|+.|+|++|.|
T Consensus 213 ~~-----~~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 213 NL-----TPLVGLEELEMSGNHFPEIRPGS----FHGLSSLKKLWVMNSQVSLIER----NAFD-GLASLVELNLAHNNL 278 (452)
T ss_dssp CC-----TTCTTCCEEECTTSCCSEECGGG----GTTCTTCCEEECTTSCCCEECT----TTTT-TCTTCCEEECCSSCC
T ss_pred cc-----cccccccEEECcCCcCcccCccc----ccCccCCCEEEeCCCcCceECH----HHhc-CCCCCCEEECCCCcC
Confidence 12 22578888888888887655443 3445788888888888875332 2334 678888888888888
Q ss_pred ChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 454 KRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 454 ~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+.. ....+..+++|+.|+|++|++..
T Consensus 279 ~~~----~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 279 SSL----PHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp SCC----CTTSSTTCTTCCEEECCSSCEEC
T ss_pred Ccc----ChHHhccccCCCEEEccCCCcCC
Confidence 764 33445667888888888888653
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=2e-21 Score=204.06 Aligned_cols=220 Identities=20% Similarity=0.206 Sum_probs=179.3
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
++|++|+|++|.++...+ ..+..+++|++|+|++|.+++..+ +..+++|++|+|++|.++.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~~--------- 94 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA----ADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQE--------- 94 (487)
T ss_dssp GGCCEEECCSSCCCCCCG----GGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEEE---------
T ss_pred CCccEEEeeCCcCCCCCH----HHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCCC---------
Confidence 489999999999987433 346677999999999999986432 5777999999999999875
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+...++|++|++++|.++... ...+++|+.|+|++|.++.. .+..+..+++|+.|+|++|.+++..+..
T Consensus 95 l~~~~~L~~L~L~~N~l~~~~-------~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 163 (487)
T 3oja_A 95 LLVGPSIETLHAANNNISRVS-------CSRGQGKKNIYLANNKITML----RDLDEGCRSRVQYLDLKLNEIDTVNFAE 163 (487)
T ss_dssp EEECTTCCEEECCSSCCCCEE-------ECCCSSCEEEECCSSCCCSG----GGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred CCCCCCcCEEECcCCcCCCCC-------ccccCCCCEEECCCCCCCCC----CchhhcCCCCCCEEECCCCCCCCcChHH
Confidence 234589999999999998642 23568999999999999874 2556778899999999999999866655
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+.. .+++|+.|+|++|.|++... ...+++|++|+|++|.|+.. +..+. .+++|+.|+|++|.|+
T Consensus 164 l~~----~l~~L~~L~Ls~N~l~~~~~------~~~l~~L~~L~Ls~N~l~~~-----~~~~~-~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 164 LAA----SSDTLEHLNLQYNFIYDVKG------QVVFAKLKTLDLSSNKLAFM-----GPEFQ-SAAGVTWISLRNNKLV 227 (487)
T ss_dssp GGG----GTTTCCEEECTTSCCCEEEC------CCCCTTCCEEECCSSCCCEE-----CGGGG-GGTTCSEEECTTSCCC
T ss_pred Hhh----hCCcccEEecCCCccccccc------cccCCCCCEEECCCCCCCCC-----CHhHc-CCCCccEEEecCCcCc
Confidence 542 36899999999999987522 22468999999999999953 33455 7899999999999999
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
. ++..+..+++|+.|++++|++....
T Consensus 228 ~-----lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 228 L-----IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp E-----ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred c-----cchhhccCCCCCEEEcCCCCCcCcc
Confidence 6 5666778899999999999999443
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=3.6e-21 Score=187.84 Aligned_cols=182 Identities=18% Similarity=0.174 Sum_probs=103.0
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCC-CChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHH
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTR-IGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSE 349 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 349 (541)
++|++|++++|.+... .+..+..+++|++|++++|. ++.. .+..+..+++|++|++++|.++.. .+.
T Consensus 56 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 123 (285)
T 1ozn_A 56 RNLTILWLHSNVLARI----DAAAFTGLALLEQLDLSDNAQLRSV----DPATFHGLGRLHTLHLDRCGLQEL----GPG 123 (285)
T ss_dssp TTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSCTTCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTT
T ss_pred CCCCEEECCCCcccee----CHhhcCCccCCCEEeCCCCCCcccc----CHHHhcCCcCCCEEECCCCcCCEE----CHh
Confidence 4455555555544431 12334445555555555554 4322 122345556666666666665542 134
Q ss_pred hcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHH
Q 009168 350 VLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGA 429 (541)
Q Consensus 350 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~ 429 (541)
.+..+++|++|++++|.++......+. .+++|+.|++++|.++...... +..+++|++|+|++|.++...
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~- 193 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDTFR-----DLGNLTHLFLHGNRISSVPERA----FRGLHSLDRLLLHQNRVAHVH- 193 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEEC-
T ss_pred HhhCCcCCCEEECCCCcccccCHhHhc-----cCCCccEEECCCCcccccCHHH----hcCccccCEEECCCCcccccC-
Confidence 455566666666666666543322222 2466777777777666443222 333477777777777776532
Q ss_pred HHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
+..+. .+++|++|++++|.|+.. ....+..+++|+.|+|++|++.
T Consensus 194 ---~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 194 ---PHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ---TTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSCEE
T ss_pred ---HhHcc-CcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCCcc
Confidence 23334 677788888888887775 3345667778888888888775
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=5.4e-22 Score=206.85 Aligned_cols=227 Identities=18% Similarity=0.188 Sum_probs=149.4
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
+++++|+|++|.+.......+..+ ++|++|+|++|.++.... ..+..+++|++|+|++|.++....
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l---------~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~- 140 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHL---------HHLEVLQLGRNSIRQIEV----GAFNGLASLNTLELFDNWLTVIPS- 140 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTC---------TTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSSCCSBCCT-
T ss_pred CCccEEECcCCcCceECHHHcCCC---------CCCCEEECCCCccCCcCh----hhccCcccCCEEECCCCcCCccCh-
Confidence 567777777776666543333222 477788888877765432 234556778888888887764321
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCC-CCChhHHHHHHHHhhcCCCcCEEEccCCCC
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSST-RIGAEGGIALAKALGQCTHLKKLDLRDNMF 339 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l 339 (541)
..+..+++|++|+|++|.+.. ++ ..+..+++|+.|++++| .++... ...+..+++|+.|+|++|.+
T Consensus 141 ---~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 141 ---GAFEYLSKLRELWLRNNPIES-----IPSYAFNRVPSLMRLDLGELKKLEYIS----EGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp ---TTSSSCTTCCEEECCSCCCCE-----ECTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCTTCCEEECTTSCC
T ss_pred ---hhhcccCCCCEEECCCCCcce-----eCHhHHhcCCcccEEeCCCCCCccccC----hhhccCCCCCCEEECCCCcc
Confidence 224456788888888887765 22 35667788888888874 444321 12356778888888888887
Q ss_pred CchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEc
Q 009168 340 GVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNL 419 (541)
Q Consensus 340 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 419 (541)
+.. ..+..+++|+.|+|++|.++...+..+.. +++|+.|+|++|.++...+.. +..+++|+.|+|
T Consensus 209 ~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L 273 (452)
T 3zyi_A 209 KDM------PNLTPLVGLEELEMSGNHFPEIRPGSFHG-----LSSLKKLWVMNSQVSLIERNA----FDGLASLVELNL 273 (452)
T ss_dssp SSC------CCCTTCTTCCEEECTTSCCSEECGGGGTT-----CTTCCEEECTTSCCCEECTTT----TTTCTTCCEEEC
T ss_pred ccc------ccccccccccEEECcCCcCcccCcccccC-----ccCCCEEEeCCCcCceECHHH----hcCCCCCCEEEC
Confidence 762 34667788888888888887655554432 578888888888887655443 344478888888
Q ss_pred cCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 420 AENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 420 s~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
++|.|+.... ..+. .+++|+.|+|++|.+.
T Consensus 274 ~~N~l~~~~~----~~~~-~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 274 AHNNLSSLPH----DLFT-PLRYLVELHLHHNPWN 303 (452)
T ss_dssp CSSCCSCCCT----TSST-TCTTCCEEECCSSCEE
T ss_pred CCCcCCccCh----HHhc-cccCCCEEEccCCCcC
Confidence 8888874221 1223 6788888888888654
No 75
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.1e-21 Score=195.31 Aligned_cols=227 Identities=15% Similarity=0.110 Sum_probs=127.0
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
..++.|+|++|.+..-.. .+..+ ++|++|+|++|.+...+. .+..+ ++|++|+|++|.++.
T Consensus 81 ~~l~~L~L~~n~l~~lp~-~l~~l-----~~L~~L~L~~n~l~~lp~-~~~~l---------~~L~~L~Ls~n~l~~--- 141 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPD-QAFRL-----SHLQHMTIDAAGLMELPD-TMQQF---------AGLETLTLARNPLRA--- 141 (328)
T ss_dssp TTCCEEEEESSCCSSCCS-CGGGG-----TTCSEEEEESSCCCCCCS-CGGGG---------TTCSEEEEESCCCCC---
T ss_pred cceeEEEccCCCchhcCh-hhhhC-----CCCCEEECCCCCccchhH-HHhcc---------CCCCEEECCCCcccc---
Confidence 689999999999873221 11111 699999999999886542 22222 599999999999983
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHH-----hcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEec
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILE-----LIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCS 307 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~ 307 (541)
++..+..+++|++|+|++|.+.+..+..+.. .+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 142 --lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~L~ 214 (328)
T 4fcg_A 142 --LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-----LPASIANLQNLKSLKIR 214 (328)
T ss_dssp --CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC-----CCGGGGGCTTCCEEEEE
T ss_pred --CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc-----chHhhcCCCCCCEEEcc
Confidence 3445778899999999998765432211110 01124556666666665553 44445555556666665
Q ss_pred CCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCcc
Q 009168 308 STRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLE 387 (541)
Q Consensus 308 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~ 387 (541)
+|+++. ++..+..+++|++|+|++|.+... ++..+..+++|+.|+|++|.+....+..+.. +++|+
T Consensus 215 ~N~l~~-----l~~~l~~l~~L~~L~Ls~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-----l~~L~ 280 (328)
T 4fcg_A 215 NSPLSA-----LGPAIHHLPKLEELDLRGCTALRN----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-----LTQLE 280 (328)
T ss_dssp SSCCCC-----CCGGGGGCTTCCEEECTTCTTCCB----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-----CTTCC
T ss_pred CCCCCc-----CchhhccCCCCCEEECcCCcchhh----hHHHhcCCCCCCEEECCCCCchhhcchhhhc-----CCCCC
Confidence 555552 223345555555555555554432 2334444555555555555444333332221 34455
Q ss_pred EEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC
Q 009168 388 VLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE 423 (541)
Q Consensus 388 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 423 (541)
.|+|++|.+.+..+..+. ..++|+.+++..+.
T Consensus 281 ~L~L~~n~~~~~iP~~l~----~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 281 KLDLRGCVNLSRLPSLIA----QLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCCCCGGGG----GSCTTCEEECCGGG
T ss_pred EEeCCCCCchhhccHHHh----hccCceEEeCCHHH
Confidence 555555444443333222 22444444444443
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.8e-22 Score=206.48 Aligned_cols=228 Identities=20% Similarity=0.169 Sum_probs=144.9
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
++++.|+|++|.+...+...+.. .++|++|+|++|.++.... ..+..+++|++|+|++|.++....
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~---------l~~L~~L~Ls~n~i~~i~~----~~~~~l~~L~~L~L~~n~l~~~~~- 129 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKH---------LRHLEILQLSRNHIRTIEI----GAFNGLANLNTLELFDNRLTTIPN- 129 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSS---------CSSCCEEECCSSCCCEECG----GGGTTCSSCCEEECCSSCCSSCCT-
T ss_pred CCCcEEEccCCcCCeeCHHHhhC---------CCCCCEEECCCCcCCccCh----hhccCCccCCEEECCCCcCCeeCH-
Confidence 46677777777666554332222 1477777777777765432 234555777777777777764321
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCC-CCChhHHHHHHHHhhcCCCcCEEEccCCCCC
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSST-RIGAEGGIALAKALGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 340 (541)
..+..+++|++|+|++|.+... ....+..+++|++|++++| .++... ...+..+++|++|+|++|.++
T Consensus 130 ---~~~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~l~~~~~l~~i~----~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 130 ---GAFVYLSKLKELWLRNNPIESI----PSYAFNRIPSLRRLDLGELKRLSYIS----EGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp ---TTSCSCSSCCEEECCSCCCCEE----CTTTTTTCTTCCEEECCCCTTCCEEC----TTTTTTCSSCCEEECTTSCCS
T ss_pred ---hHhhccccCceeeCCCCccccc----CHHHhhhCcccCEeCCCCCCCcceeC----cchhhcccccCeecCCCCcCc
Confidence 2345557778888887777651 1234566777888888774 343221 123567778888888888877
Q ss_pred chHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEcc
Q 009168 341 VEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLA 420 (541)
Q Consensus 341 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 420 (541)
. ...+..+++|+.|+|++|.++...+..+.. +++|+.|+|++|.|+...+.. +..+++|+.|+|+
T Consensus 199 ~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 199 E------IPNLTPLIKLDELDLSGNHLSAIRPGSFQG-----LMHLQKLWMIQSQIQVIERNA----FDNLQSLVEINLA 263 (440)
T ss_dssp S------CCCCTTCSSCCEEECTTSCCCEECTTTTTT-----CTTCCEEECTTCCCCEECTTS----STTCTTCCEEECT
T ss_pred c------ccccCCCcccCEEECCCCccCccChhhhcc-----CccCCEEECCCCceeEEChhh----hcCCCCCCEEECC
Confidence 5 234667778888888888877654444432 578888888888877655433 3344788888888
Q ss_pred CCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 421 ENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 421 ~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+|.|+.... ..+. .+++|+.|+|++|.+.
T Consensus 264 ~N~l~~~~~----~~~~-~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 264 HNNLTLLPH----DLFT-PLHHLERIHLHHNPWN 292 (440)
T ss_dssp TSCCCCCCT----TTTS-SCTTCCEEECCSSCEE
T ss_pred CCCCCccCh----hHhc-cccCCCEEEcCCCCcc
Confidence 888774221 1223 6778888888888664
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.6e-21 Score=188.88 Aligned_cols=241 Identities=18% Similarity=0.157 Sum_probs=141.1
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
..++.+.+.++.++......+...+.. ++|++|+|++|.+....+..+.. ...++|++|+|++|.++....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-------~~~~~L~~L~Ls~n~i~~~~~ 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAY--SRLKELTLEDLKITGTMPPLPLE-------ATGLALSSLRLRNVSWATGRS 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHH--SCCCEEEEESCCCBSCCCCCSSS-------CCCBCCSSCEEESCCCSSTTS
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhccc--CceeEEEeeCCEeccchhhhhhh-------ccCCCCCEEEeecccccchhh
Confidence 368889999998887666655555544 57999999888776543221100 112578888888888875322
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIG 312 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 312 (541)
..-...+..+++|++|+|++|.++...+ ..+..+++|++|+|++|.+...........+..+++|++|++++|+++
T Consensus 135 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 135 WLAELQQWLKPGLKVLSIAQAHSPAFSC----EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp SHHHHHTTBCSCCCEEEEECCSSCCCCT----TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred hhHHHHhhhccCCCEEEeeCCCcchhhH----HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 1111223466788888888888765322 334556788888888887654221111122356677888888888776
Q ss_pred hhHHHHHHHH-hhcCCCcCEEEccCCCCCchHHHHHHHhcccC---CCCCEEEcccCCCChhHHHHHHHHHhhcCCCccE
Q 009168 313 AEGGIALAKA-LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAF---PDLTEVYLSYLNLEDEGAEALAGALKECAPSLEV 388 (541)
Q Consensus 313 ~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~---~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~ 388 (541)
..+. .+.. +..+++|++|+|++|.++... +..+..+ ++|++|+|++|.++. .+..+ .++|+.
T Consensus 211 ~l~~--~~~~l~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~-------~~~L~~ 276 (310)
T 4glp_A 211 TPTG--VCAALAAAGVQPHSLDLSHNSLRATV----NPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL-------PAKLRV 276 (310)
T ss_dssp CHHH--HHHHHHHHTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTCCCEECCSSCCCS-CCSCC-------CSCCSC
T ss_pred chHH--HHHHHHhcCCCCCEEECCCCCCCccc----hhhHHhccCcCcCCEEECCCCCCCc-hhhhh-------cCCCCE
Confidence 4322 2222 456677777777777776531 2333333 567777777776662 22211 245666
Q ss_pred EEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCCh
Q 009168 389 LDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQD 426 (541)
Q Consensus 389 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 426 (541)
|+|++|.|++... +..+++|+.|+|++|.+++
T Consensus 277 L~Ls~N~l~~~~~------~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ------PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC------TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch------hhhCCCccEEECcCCCCCC
Confidence 6666666554210 2233555555555555554
No 78
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=3.5e-21 Score=187.94 Aligned_cols=205 Identities=17% Similarity=0.122 Sum_probs=124.0
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCC-CChHHHHHHHHH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNM-TGDEGAVAISEI 294 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 294 (541)
+|++|+|++|.++..... .+..+++|++|+|++|.++...+ ..+..+++|++|++++|. ++.. .+..
T Consensus 33 ~l~~L~l~~n~i~~~~~~----~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~l~~~----~~~~ 100 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAA----SFRACRNLTILWLHSNVLARIDA----AAFTGLALLEQLDLSDNAQLRSV----DPAT 100 (285)
T ss_dssp TCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECT----TTTTTCTTCCEEECCSCTTCCCC----CTTT
T ss_pred CceEEEeeCCcCCccCHH----HcccCCCCCEEECCCCccceeCH----hhcCCccCCCEEeCCCCCCcccc----CHHH
Confidence 566666666666543221 23445666777776666654322 223444667777777765 5541 1344
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+..+++|++|++++|.++.. .+..+..+++|++|++++|.++... ...+..+++|+.|++++|.++......
T Consensus 101 ~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCGLQEL----GPGLFRGLAALQYLYLQDNALQALP----DDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp TTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred hcCCcCCCEEECCCCcCCEE----CHhHhhCCcCCCEEECCCCcccccC----HhHhccCCCccEEECCCCcccccCHHH
Confidence 55667777777777776643 2334566777777777777766531 234566777777777777776543332
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+. .+++|+.|++++|.+++..+.. +..+++|+.|+|++|.+++... ..+. .+++|++|++++|.+.
T Consensus 173 ~~-----~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 173 FR-----GLHSLDRLLLHQNRVAHVHPHA----FRDLGRLMTLYLFANNLSALPT----EALA-PLRALQYLRLNDNPWV 238 (285)
T ss_dssp TT-----TCTTCCEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCSCCCH----HHHT-TCTTCCEEECCSSCEE
T ss_pred hc-----CccccCEEECCCCcccccCHhH----ccCcccccEeeCCCCcCCcCCH----HHcc-cCcccCEEeccCCCcc
Confidence 32 2567777777777777654433 3344777888888877775332 2334 6777888888887765
No 79
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.78 E-value=1.8e-18 Score=157.11 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=113.0
Q ss_pred HHHHHhhcCCCcCEEEccCC-CCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCC
Q 009168 318 ALAKALGQCTHLKKLDLRDN-MFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDI 396 (541)
Q Consensus 318 ~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 396 (541)
.+...+..++.|++|+|++| .+++.++..+...+..+++|++|+|++|.|++.+...++.++..+ ++|++|+|++|.|
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n-~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVN-NTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHC-SSCCEEECCSSCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhC-CCcCEEECcCCcC
Confidence 35666667777777777777 777777777777777777777788888888777777777777754 6788888888888
Q ss_pred CHHHHHHHHHHHhhCCCccEEEc--cCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCC
Q 009168 397 TAKAASSLAACIALKQFLTKLNL--AENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKP 469 (541)
Q Consensus 397 ~~~~~~~l~~~l~~~~~L~~L~L--s~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 469 (541)
++.+...++..+..+++|++|+| ++|.|++.|+..+++++. .+++|++|+|++|.|++.|+ ++.++..+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~-~n~~L~~L~L~~n~i~~~~~--i~~~L~~N~ 177 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLE-KNTTLLKFGYHFTQQGPRLR--ASNAMMNNN 177 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHH-HCSSCCEEECCCSSHHHHHH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHH-hCCCcCEEeccCCCCChHHH--HHHHHHhhH
Confidence 88888888888888888888888 778888888888888887 78888888888888877763 555555443
No 80
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=4.3e-19 Score=184.45 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=72.3
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL 351 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 351 (541)
+|++|++++|.+.. ++ .+..+++|++|++++|+++.. + ...++|+.|++++|.++. ++.
T Consensus 216 ~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~l-----~---~~~~~L~~L~l~~N~l~~-----l~~-- 274 (454)
T 1jl5_A 216 SLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKTL-----P---DLPPSLEALNVRDNYLTD-----LPE-- 274 (454)
T ss_dssp TCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSSC-----C---SCCTTCCEEECCSSCCSC-----CCC--
T ss_pred cccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCcc-----c---ccccccCEEECCCCcccc-----cCc--
Confidence 45555555555543 33 244555556666655555431 1 112455555555555543 111
Q ss_pred ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhC-CCccEEEccCCCCChhHHH
Q 009168 352 PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALK-QFLTKLNLAENELQDEGAI 430 (541)
Q Consensus 352 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~g~~ 430 (541)
..++|+.|++++|.+++.. . ..++|+.|++++|.+++. ... ++|++|++++|.++.
T Consensus 275 -~~~~L~~L~ls~N~l~~l~--~-------~~~~L~~L~l~~N~l~~i---------~~~~~~L~~L~Ls~N~l~~---- 331 (454)
T 1jl5_A 275 -LPQSLTFLDVSENIFSGLS--E-------LPPNLYYLNASSNEIRSL---------CDLPPSLEELNVSNNKLIE---- 331 (454)
T ss_dssp -CCTTCCEEECCSSCCSEES--C-------CCTTCCEEECCSSCCSEE---------CCCCTTCCEEECCSSCCSC----
T ss_pred -ccCcCCEEECcCCccCccc--C-------cCCcCCEEECcCCcCCcc---------cCCcCcCCEEECCCCcccc----
Confidence 1245555555555554310 0 013455555555554431 111 355555665555552
Q ss_pred HHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 431 LIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 431 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
++. .+++|++|++++|.++. ++. ..++|++|++++|+++.
T Consensus 332 -lp~----~~~~L~~L~L~~N~l~~-----lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 332 -LPA----LPPRLERLIASFNHLAE-----VPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp -CCC----CCTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSS
T ss_pred -ccc----cCCcCCEEECCCCcccc-----ccc---hhhhccEEECCCCCCCc
Confidence 111 23555556665555553 222 23455566666555544
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.8e-18 Score=185.66 Aligned_cols=264 Identities=17% Similarity=0.111 Sum_probs=200.6
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.++.|+|++|.+..+.. ..++|++|+|++|.++.-.. ..++|++|+|++|.+...+.
T Consensus 61 ~~L~~L~L~~N~l~~lp~------------~l~~L~~L~Ls~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA------------LPPELRTLEVSGNQLTSLPV---------LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp TTCSEEEECSCCCSCCCC------------CCTTCCEEEECSCCCSCCCC---------CCTTCCEEEECSCCCCCCCC-
T ss_pred CCCcEEEecCCCCCCCCC------------cCCCCCEEEcCCCcCCcCCC---------CCCCCCEEECcCCcCCCCCC-
Confidence 789999999998654332 22799999999999874211 23699999999999888653
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHN 280 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 280 (541)
..++|+.|++++|.++... ...++|++|+|++|.++... ...++|+.|++++
T Consensus 119 ------------~l~~L~~L~L~~N~l~~lp--------~~l~~L~~L~Ls~N~l~~l~--------~~~~~L~~L~L~~ 170 (622)
T 3g06_A 119 ------------LPSGLCKLWIFGNQLTSLP--------VLPPGLQELSVSDNQLASLP--------ALPSELCKLWAYN 170 (622)
T ss_dssp ------------CCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCCC--------CCCTTCCEEECCS
T ss_pred ------------CCCCcCEEECCCCCCCcCC--------CCCCCCCEEECcCCcCCCcC--------CccCCCCEEECCC
Confidence 1258999999999998631 12488999999999987521 2347899999999
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEE
Q 009168 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEV 360 (541)
Q Consensus 281 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 360 (541)
|.++. ++ ..+++|+.|++++|.++.. + ...++|+.|++++|.++.. +. .+++|+.|
T Consensus 171 N~l~~-----l~---~~~~~L~~L~Ls~N~l~~l-----~---~~~~~L~~L~L~~N~l~~l-----~~---~~~~L~~L 226 (622)
T 3g06_A 171 NQLTS-----LP---MLPSGLQELSVSDNQLASL-----P---TLPSELYKLWAYNNRLTSL-----PA---LPSGLKEL 226 (622)
T ss_dssp SCCSC-----CC---CCCTTCCEEECCSSCCSCC-----C---CCCTTCCEEECCSSCCSSC-----CC---CCTTCCEE
T ss_pred CCCCC-----Cc---ccCCCCcEEECCCCCCCCC-----C---CccchhhEEECcCCccccc-----CC---CCCCCCEE
Confidence 99987 44 4578999999999999852 2 2357999999999998862 32 34789999
Q ss_pred EcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC
Q 009168 361 YLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH 440 (541)
Q Consensus 361 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 440 (541)
+|++|.|+... ..+++|+.|+|++|.|+.... .+++|+.|+|++|.|+ .++..+. .+
T Consensus 227 ~Ls~N~L~~lp---------~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~-----~lp~~l~-~l 283 (622)
T 3g06_A 227 IVSGNRLTSLP---------VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT-----RLPESLI-HL 283 (622)
T ss_dssp ECCSSCCSCCC---------CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCC-----SCCGGGG-GS
T ss_pred EccCCccCcCC---------CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCC-----cCCHHHh-hc
Confidence 99999998622 236899999999999985322 3588999999999999 4566677 89
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhc---CCCccEEEecCCCC
Q 009168 441 GQLIEIDLSTNSMKRAGARLLAQVAVN---KPGLKMLNINGNFI 481 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~---~~~L~~L~L~~N~i 481 (541)
++|+.|+|++|.|+......+...-.. ...+..++++++.+
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~~~~~~~ 327 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASA 327 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHHHHHHHSTTCCSCEEECCSCCC--
T ss_pred cccCEEEecCCCCCCcCHHHHHhcccccccCCCceeeecCCCcc
Confidence 999999999999999866665544322 12345566665443
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=8.3e-19 Score=172.99 Aligned_cols=151 Identities=19% Similarity=0.300 Sum_probs=76.1
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+..+++|++|++++|+++.. ..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+++...
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~-- 146 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITDV------TPLAGLSNLQVLYLDLNQITNISP-- 146 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCC------GGGTTCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred HccCCCCCEEEccCCcCCCc------hhhcCCCCCCEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCcCcc--
Confidence 34444444444444444431 1244455555555555555441 124455555555555555543322
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
+ ..+++|+.|++++|.+++..+ +..+++|+.|+|++|.+++... +. .+++|++|+|++|.|+
T Consensus 147 l-----~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~~~~------l~-~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 147 L-----AGLTNLQYLSIGNAQVSDLTP------LANLSKLTTLKADDNKISDISP------LA-SLPNLIEVHLKNNQIS 208 (308)
T ss_dssp G-----GGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGG------GG-GCTTCCEEECTTSCCC
T ss_pred c-----cCCCCccEEEccCCcCCCChh------hcCCCCCCEEECCCCccCcChh------hc-CCCCCCEEEccCCccC
Confidence 1 124555566665555554322 3344566666666666654221 33 5666666666666666
Q ss_pred hHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 455 RAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 455 ~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+.. .+..+++|+.|++++|+++.
T Consensus 209 ~~~------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 209 DVS------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp BCG------GGTTCTTCCEEEEEEEEEEC
T ss_pred ccc------cccCCCCCCEEEccCCeeec
Confidence 532 14556666666666666554
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=4e-20 Score=182.91 Aligned_cols=266 Identities=20% Similarity=0.156 Sum_probs=161.5
Q ss_pred CcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHH
Q 009168 153 NSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGV 232 (541)
Q Consensus 153 ~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 232 (541)
.++++|++++|.+ ... ..+. ..|+.|+|++|.+............ .......++|++|+|++|.+++...
T Consensus 43 ~~L~~l~l~~n~l-~~p-~~~~-------~~L~~L~L~~n~l~~~~~~~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADL-GQFT-------DIIKSLSLKRLTVRAARIPSRILFG-ALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EECTTHHHHCCTT-CCC-HHHH-------HHHHHCCCCEEEEEEEECBHHHHHH-HHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCceeEeeccccc-ccH-HHHH-------HHHhhcccccccccCCCcCHHHHHH-HHHhcCcCCccEEEccCCcccchhH
Confidence 4566677777766 211 1111 1266666776665432211100000 1111123578888888887765322
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcC-CCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCC
Q 009168 233 RAFGALLKSQNNLEELHLMNDGISEEAAQAILELIP-STEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRI 311 (541)
Q Consensus 233 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 311 (541)
..+ ++..+++|++|+|++|.+++. +..+..+.. ..++|++|++++|.+... .+..+..+++|++|++++|++
T Consensus 113 ~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 113 PPL--LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF----SCEQVRVFPALSTLDLSDNPE 185 (312)
T ss_dssp CCS--SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----CTTTCCCCSSCCEEECCSCTT
T ss_pred HHH--HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----hHHHhccCCCCCEEECCCCCc
Confidence 211 025567788888888887765 333433311 136888888888887762 225667788888888888887
Q ss_pred ChhHHHHHHHHh--hcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEE
Q 009168 312 GAEGGIALAKAL--GQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVL 389 (541)
Q Consensus 312 ~~~~~~~l~~~l--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L 389 (541)
... ..++..+ ..+++|++|+|++|.++.... .....+..+++|+.|++++|.+++..+...+ ..+++|+.|
T Consensus 186 ~~~--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~~l~~L~~L 258 (312)
T 1wwl_A 186 LGE--RGLISALCPLKFPTLQVLALRNAGMETPSG-VCSALAAARVQLQGLDLSHNSLRDAAGAPSC----DWPSQLNSL 258 (312)
T ss_dssp CHH--HHHHHHSCTTSCTTCCEEECTTSCCCCHHH-HHHHHHHTTCCCSEEECTTSCCCSSCCCSCC----CCCTTCCEE
T ss_pred Ccc--hHHHHHHHhccCCCCCEEECCCCcCcchHH-HHHHHHhcCCCCCEEECCCCcCCcccchhhh----hhcCCCCEE
Confidence 532 1233444 677888888888888874211 1223345678888888888888764421111 124788888
Q ss_pred EecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 390 DLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 390 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
+|++|.|+. .+.. +. ++|++|+|++|.|++. +. +. .+++|++|+|++|.|++.
T Consensus 259 ~Ls~N~l~~-ip~~----~~--~~L~~L~Ls~N~l~~~-----p~-~~-~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 259 NLSFTGLKQ-VPKG----LP--AKLSVLDLSYNRLDRN-----PS-PD-ELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ECTTSCCSS-CCSS----CC--SEEEEEECCSSCCCSC-----CC-TT-TSCEEEEEECTTCTTTCC
T ss_pred ECCCCccCh-hhhh----cc--CCceEEECCCCCCCCC-----hh-Hh-hCCCCCEEeccCCCCCCC
Confidence 888888873 2221 11 6789999999988853 22 44 788999999999988764
No 84
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.75 E-value=1.7e-17 Score=149.34 Aligned_cols=151 Identities=18% Similarity=0.155 Sum_probs=136.2
Q ss_pred HHHHHhcccCCCCCEEEcccC-CCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC
Q 009168 345 VALSEVLPAFPDLTEVYLSYL-NLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE 423 (541)
Q Consensus 345 ~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 423 (541)
..+...+...+.|++|+|++| .|++.+...++.+|+.+ +.|+.|+|++|.|++.++..++.++..+++|++|+|++|.
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 457777888899999999986 99999999999999976 8999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhcCCCccEEEccCC---CCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHHhcCccc
Q 009168 424 LQDEGAILIGKSLEEGHGQLIEIDLSTN---SMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEILKHSLDV 499 (541)
Q Consensus 424 l~~~g~~~l~~~l~~~~~~L~~L~Ls~n---~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l~~~~~~ 499 (541)
|++.|+..|+++|. .++.|++|+|++| .|++.|...++.++..+++|+.|+++.|.++. ...+.++++.+...
T Consensus 110 Ig~~Ga~ala~aL~-~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~--~~~ia~aL~~N~~~ 185 (197)
T 1pgv_A 110 LTPELLARLLRSTL-VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA--RHRVSEALERNYER 185 (197)
T ss_dssp CCHHHHHHHHHHTT-TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh-hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH--HHHHHHHHHhcchH
Confidence 99999999999999 8999999999865 78999999999999999999999999887654 34678888776543
No 85
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=5e-21 Score=207.89 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=100.9
Q ss_pred hccCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCch
Q 009168 119 TAASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPE 198 (541)
Q Consensus 119 ~~~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~ 198 (541)
..+.+++|||++|.+..+... .+..+ ++|++|+|++|.|..-...++... ++|++|+|++|.+...+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~----~f~~l----~~L~~L~Ls~N~i~~i~~~~f~~L-----~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSY----SFFSF----PELQVLDLSRCEIQTIEDGAYQSL-----SHLSTLILTGNPIQSLA 116 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTT----TTTTC----TTCCEEECTTCCCCEECTTTTTTC-----TTCCEEECTTCCCCEEC
T ss_pred CCcCCCEEEeeCCCCCCCCHH----HHhCC----CCCCEEECCCCcCCCcChhHhcCC-----CCCCEEEccCCcCCCCC
Confidence 346789999999997655431 12223 799999999999875433333322 68999999999998876
Q ss_pred HHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEc
Q 009168 199 EEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHF 278 (541)
Q Consensus 199 ~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L 278 (541)
...+..+ ++|++|+|++|.++.... ..++.+++|++|+|++|.+.... +...+..+++|++|++
T Consensus 117 ~~~f~~L---------~~L~~L~Ls~N~l~~l~~----~~~~~L~~L~~L~Ls~N~l~~~~---~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 117 LGAFSGL---------SSLQKLVAVETNLASLEN----FPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDL 180 (635)
T ss_dssp GGGGTTC---------TTCCEEECTTSCCCCSTT----CCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEEC
T ss_pred HHHhcCC---------CCCCEEECCCCcCCCCCh----hhhhcCcccCeeccccCccccCC---Cchhhccchhhhhhcc
Confidence 5544333 599999999999986432 23567799999999999986531 1233455689999999
Q ss_pred CCCCCCh
Q 009168 279 HNNMTGD 285 (541)
Q Consensus 279 s~n~l~~ 285 (541)
++|.+..
T Consensus 181 ~~N~l~~ 187 (635)
T 4g8a_A 181 SSNKIQS 187 (635)
T ss_dssp CSSCCCE
T ss_pred cCccccc
Confidence 9998865
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.75 E-value=6.1e-19 Score=183.31 Aligned_cols=260 Identities=19% Similarity=0.190 Sum_probs=157.8
Q ss_pred cCCcEEeccCCCcccccHHHHHHHhccccCCCCcceEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHH
Q 009168 121 ASQTVFDISGGQRGFIEEEEAKLLLGPLTEPGNSYTRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEE 200 (541)
Q Consensus 121 ~~l~~ldls~~~~~~~~~~~~~~ll~~l~~~~~~l~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~ 200 (541)
+.++.|++++|.+..+. . ...++++|++++|.+..-. ...++|++|+|++|.+...+
T Consensus 91 ~~L~~L~l~~n~l~~lp--------~----~~~~L~~L~l~~n~l~~l~---------~~~~~L~~L~L~~n~l~~lp-- 147 (454)
T 1jl5_A 91 PHLESLVASCNSLTELP--------E----LPQSLKSLLVDNNNLKALS---------DLPPLLEYLGVSNNQLEKLP-- 147 (454)
T ss_dssp TTCSEEECCSSCCSSCC--------C----CCTTCCEEECCSSCCSCCC---------SCCTTCCEEECCSSCCSSCC--
T ss_pred CCCCEEEccCCcCCccc--------c----ccCCCcEEECCCCccCccc---------CCCCCCCEEECcCCCCCCCc--
Confidence 45666777666543221 1 1146677777777665311 11146777777777666543
Q ss_pred HHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCC
Q 009168 201 ALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHN 280 (541)
Q Consensus 201 ~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~ 280 (541)
.+. ..++|++|++++|.++.. +. ...+|++|++++|.+++. . .+..+++|++|++++
T Consensus 148 ~~~---------~l~~L~~L~l~~N~l~~l-----p~---~~~~L~~L~L~~n~l~~l-----~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 148 ELQ---------NSSFLKIIDVDNNSLKKL-----PD---LPPSLEFIAAGNNQLEEL-----P-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCT---------TCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSSC-----C-CCTTCTTCCEEECCS
T ss_pred ccC---------CCCCCCEEECCCCcCccc-----CC---CcccccEEECcCCcCCcC-----c-cccCCCCCCEEECCC
Confidence 111 124677777777766541 11 124677777777766652 1 245567777777777
Q ss_pred CCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEE
Q 009168 281 NMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEV 360 (541)
Q Consensus 281 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 360 (541)
|.+.. ++. ..++|++|++++|.+.. ++ .+..+++|++|++++|.++. ++. ..++|+.|
T Consensus 205 N~l~~-----l~~---~~~~L~~L~l~~n~l~~-----lp-~~~~l~~L~~L~l~~N~l~~-----l~~---~~~~L~~L 262 (454)
T 1jl5_A 205 NSLKK-----LPD---LPLSLESIVAGNNILEE-----LP-ELQNLPFLTTIYADNNLLKT-----LPD---LPPSLEAL 262 (454)
T ss_dssp SCCSS-----CCC---CCTTCCEEECCSSCCSS-----CC-CCTTCTTCCEEECCSSCCSS-----CCS---CCTTCCEE
T ss_pred CcCCc-----CCC---CcCcccEEECcCCcCCc-----cc-ccCCCCCCCEEECCCCcCCc-----ccc---cccccCEE
Confidence 76654 221 12467777777777663 23 25667777777777777764 122 23677777
Q ss_pred EcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcC
Q 009168 361 YLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGH 440 (541)
Q Consensus 361 ~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 440 (541)
++++|.+++. + ...++|+.|++++|.+++.. ...++|++|++++|.++. +. ..
T Consensus 263 ~l~~N~l~~l-~--------~~~~~L~~L~ls~N~l~~l~--------~~~~~L~~L~l~~N~l~~---------i~-~~ 315 (454)
T 1jl5_A 263 NVRDNYLTDL-P--------ELPQSLTFLDVSENIFSGLS--------ELPPNLYYLNASSNEIRS---------LC-DL 315 (454)
T ss_dssp ECCSSCCSCC-C--------CCCTTCCEEECCSSCCSEES--------CCCTTCCEEECCSSCCSE---------EC-CC
T ss_pred ECCCCccccc-C--------cccCcCCEEECcCCccCccc--------CcCCcCCEEECcCCcCCc---------cc-CC
Confidence 7777777641 1 11367888888888777521 012578888888888874 11 23
Q ss_pred -CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 441 -GQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 441 -~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
++|++|++++|.++. ++. ..++|++|++++|.++.
T Consensus 316 ~~~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~L~~N~l~~ 351 (454)
T 1jl5_A 316 PPSLEELNVSNNKLIE-----LPA---LPPRLERLIASFNHLAE 351 (454)
T ss_dssp CTTCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSC
T ss_pred cCcCCEEECCCCcccc-----ccc---cCCcCCEEECCCCcccc
Confidence 589999999998886 222 24789999999998874
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.75 E-value=7.6e-20 Score=177.56 Aligned_cols=198 Identities=18% Similarity=0.129 Sum_probs=114.7
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHh
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEV 350 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 350 (541)
++|++|++++|.+... .+..+..+++|++|++++|+++.. .+..+..+++|++|++++|.+.... ...
T Consensus 52 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 119 (276)
T 2z62_A 52 PELQVLDLSRCEIQTI----EDGAYQSLSHLSTLILTGNPIQSL----ALGAFSGLSSLQKLVAVETNLASLE----NFP 119 (276)
T ss_dssp TTCSEEECTTCCCCEE----CTTTTTTCTTCCEEECTTCCCCEE----CTTTTTTCTTCCEEECTTSCCCCST----TCC
T ss_pred cCCcEEECCCCcCCcc----CHHHccCCcCCCEEECCCCccCcc----ChhhhcCCccccEEECCCCCccccC----chh
Confidence 4444444444444431 012334455555555555555432 1223455666666666666665421 223
Q ss_pred cccCCCCCEEEcccCCCChhH-HHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCcc-EEEccCCCCChhH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEG-AEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLT-KLNLAENELQDEG 428 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~g 428 (541)
+..+++|++|++++|.++... +..+. .+++|+.|++++|.+++..+..+..+ ...+.|. .|++++|.++..
T Consensus 120 ~~~l~~L~~L~l~~n~l~~~~l~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~L~ls~n~l~~~- 192 (276)
T 2z62_A 120 IGHLKTLKELNVAHNLIQSFKLPEYFS-----NLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLSLNPMNFI- 192 (276)
T ss_dssp CTTCTTCCEEECCSSCCCCCCCCGGGG-----GCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEEEECCSSCCCEE-
T ss_pred cccCCCCCEEECcCCccceecCchhhc-----cCCCCCEEECCCCCCCcCCHHHhhhh-hhccccceeeecCCCccccc-
Confidence 556667777777777665422 22332 24677777777777776544444433 2223333 788888888743
Q ss_pred HHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhH--HHHHHHHHhcC
Q 009168 429 AILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEG--IDEVKEILKHS 496 (541)
Q Consensus 429 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g--~~~l~~~l~~~ 496 (541)
..... ...+|++|+|++|.|+.. ....+..+++|+.|+|++|+++... +..+...+.+.
T Consensus 193 ----~~~~~-~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~ 253 (276)
T 2z62_A 193 ----QPGAF-KEIRLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 253 (276)
T ss_dssp ----CTTSS-CSCCEEEEECCSSCCSCC----CTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred ----Ccccc-CCCcccEEECCCCceeec----CHhHhcccccccEEEccCCcccccCCchHHHHHHHHhc
Confidence 22222 355899999999988874 3344567888999999999988643 55665555544
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=4.6e-18 Score=167.67 Aligned_cols=190 Identities=18% Similarity=0.228 Sum_probs=116.0
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+|++|++++|.++... .+..+++|++|+|++|.++.... +..+++|++|++++|.+.. + ..+
T Consensus 42 ~L~~L~l~~~~i~~l~------~~~~l~~L~~L~L~~n~i~~~~~------~~~l~~L~~L~L~~n~l~~-----~-~~~ 103 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIE------GVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLKN-----V-SAI 103 (308)
T ss_dssp TCCEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCSC-----C-GGG
T ss_pred CcCEEEeeCCCccCch------hhhccCCCCEEEccCCcCCCChh------HccCCCCCEEEccCCcCCC-----c-hhh
Confidence 5666666666655421 24455666666666666654321 3455666666666666665 2 245
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEAL 375 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 375 (541)
..+++|++|++++|+++... .+..+++|++|++++|.++.. ..+..+++|+.|++++|.+++... +
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~------~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQITNI------SPLAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCG------GGTTCTTCCEEECCSSCCCCC------GGGGGCTTCCEEECCSSCCCCCGG--G
T ss_pred cCCCCCCEEECCCCCCCCch------hhcCCCCCCEEECCCCccCcC------ccccCCCCccEEEccCCcCCCChh--h
Confidence 56666777777777666421 256667777777777776652 125666777777777777665332 2
Q ss_pred HHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 376 AGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 376 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
..+++|+.|++++|.+++..+ +..+++|++|+|++|.+++.. .+. .+++|+.|++++|.|+.
T Consensus 170 -----~~l~~L~~L~l~~n~l~~~~~------l~~l~~L~~L~L~~N~l~~~~------~l~-~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 -----ANLSKLTTLKADDNKISDISP------LASLPNLIEVHLKNNQISDVS------PLA-NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp -----TTCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECTTSCCCBCG------GGT-TCTTCCEEEEEEEEEEC
T ss_pred -----cCCCCCCEEECCCCccCcChh------hcCCCCCCEEEccCCccCccc------ccc-CCCCCCEEEccCCeeec
Confidence 225677777777777765432 445577777777777776533 134 67777777777777655
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=6.1e-19 Score=172.29 Aligned_cols=189 Identities=22% Similarity=0.202 Sum_probs=87.8
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL 351 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 351 (541)
.++.|+|++|.++.. .+..+..+++|++|++++|.++.... ...+++|++|+|++|.++. ++..+
T Consensus 32 ~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~Ls~N~l~~-----l~~~~ 96 (290)
T 1p9a_G 32 DTTILHLSENLLYTF----SLATLMPYTRLTQLNLDRAELTKLQV------DGTLPVLGTLDLSHNQLQS-----LPLLG 96 (290)
T ss_dssp TCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTTSCCCEEEC------CSCCTTCCEEECCSSCCSS-----CCCCT
T ss_pred CCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCCCccCcccC------CCCCCcCCEEECCCCcCCc-----Cchhh
Confidence 444444444444431 11233444455555555555443210 1344555555555555543 23344
Q ss_pred ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHH
Q 009168 352 PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAIL 431 (541)
Q Consensus 352 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 431 (541)
..+++|+.|++++|.++...+..+. .+++|+.|+|++|.|+...+.. +...++|+.|+|++|.|+.
T Consensus 97 ~~l~~L~~L~l~~N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~----- 162 (290)
T 1p9a_G 97 QTLPALTVLDVSFNRLTSLPLGALR-----GLGELQELYLKGNELKTLPPGL----LTPTPKLEKLSLANNNLTE----- 162 (290)
T ss_dssp TTCTTCCEEECCSSCCCCCCSSTTT-----TCTTCCEEECTTSCCCCCCTTT----TTTCTTCCEEECTTSCCSC-----
T ss_pred ccCCCCCEEECCCCcCcccCHHHHc-----CCCCCCEEECCCCCCCccChhh----cccccCCCEEECCCCcCCc-----
Confidence 4455555555555555432222221 1355555555555555432221 2233556666666665552
Q ss_pred HHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC-hhHHHHHHHHHh
Q 009168 432 IGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP-DEGIDEVKEILK 494 (541)
Q Consensus 432 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~-~~g~~~l~~~l~ 494 (541)
++......+++|++|+|++|.|+. ++..+...+.|+.|+|++|++. +.++..+..-+.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~-----ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYT-----IPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred cCHHHhcCcCCCCEEECCCCcCCc-----cChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 222211145566666666666654 4444445555666666666554 233334443333
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=5.9e-19 Score=171.23 Aligned_cols=210 Identities=21% Similarity=0.181 Sum_probs=134.4
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+|++|+|++|.++..... .+..+++|++|+|++|.++.... ..+..+++|++|++++|.+... .+..+
T Consensus 29 ~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 96 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIED----GAYQSLSHLSTLILTGNPIQSL----ALGAF 96 (276)
T ss_dssp TCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECT----TTTTTCTTCCEEECTTCCCCEE----CTTTT
T ss_pred CccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCH----HHccCCcCCCEEECCCCccCcc----Chhhh
Confidence 566777777766654322 24445677777777777664322 1234457777777777777652 12456
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEAL 375 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 375 (541)
..+++|++|++++|.+.... ...+..+++|++|++++|.++... ++..+..+++|+.|++++|.++...+..+
T Consensus 97 ~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~---l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 97 SGLSSLQKLVAVETNLASLE----NFPIGHLKTLKELNVAHNLIQSFK---LPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TTCTTCCEEECTTSCCCCST----TCCCTTCTTCCEEECCSSCCCCCC---CCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred cCCccccEEECCCCCccccC----chhcccCCCCCEEECcCCccceec---CchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 66778888888888776531 113667788888888888876521 35567778888888888888876544444
Q ss_pred HHHHhhcCCCcc-EEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 376 AGALKECAPSLE-VLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 376 ~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
... ..++.|. .|++++|.++...+.. ....+|+.|+|++|.++.... ..+. .+++|++|+|++|.++
T Consensus 170 ~~l--~~L~~l~l~L~ls~n~l~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~----~~~~-~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 170 RVL--HQMPLLNLSLDLSLNPMNFIQPGA-----FKEIRLKELALDTNQLKSVPD----GIFD-RLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHH--HTCTTCCEEEECCSSCCCEECTTS-----SCSCCEEEEECCSSCCSCCCT----TTTT-TCCSCCEEECCSSCBC
T ss_pred hhh--hhccccceeeecCCCcccccCccc-----cCCCcccEEECCCCceeecCH----hHhc-ccccccEEEccCCccc
Confidence 332 1123333 7888888887644321 123478899999998874321 1223 6888999999998887
Q ss_pred hH
Q 009168 455 RA 456 (541)
Q Consensus 455 ~~ 456 (541)
..
T Consensus 238 c~ 239 (276)
T 2z62_A 238 CS 239 (276)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.8e-19 Score=173.81 Aligned_cols=159 Identities=23% Similarity=0.167 Sum_probs=81.1
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHH
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALA 376 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 376 (541)
.+++|++|++++|+++. ++..+..+++|++|+|++|.++... +..+..+++|+.|+|++|.++...+..+.
T Consensus 75 ~l~~L~~L~Ls~N~l~~-----l~~~~~~l~~L~~L~l~~N~l~~l~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQS-----LPLLGQTLPALTVLDVSFNRLTSLP----LGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CCTTCCEEECCSSCCSS-----CCCCTTTCTTCCEEECCSSCCCCCC----SSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCcCCEEECCCCcCCc-----CchhhccCCCCCEEECCCCcCcccC----HHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 34444444444444442 2223344555555555555555421 23455556666666666655543222221
Q ss_pred HHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh-
Q 009168 377 GALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR- 455 (541)
Q Consensus 377 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~- 455 (541)
.+++|+.|+|++|.|+...... +...++|++|+|++|.|+ .++..+. .+++|+.|+|++|.+..
T Consensus 146 -----~l~~L~~L~L~~N~l~~l~~~~----~~~l~~L~~L~L~~N~l~-----~ip~~~~-~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 146 -----PTPKLEKLSLANNNLTELPAGL----LNGLENLDTLLLQENSLY-----TIPKGFF-GSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp -----TCTTCCEEECTTSCCSCCCTTT----TTTCTTCCEEECCSSCCC-----CCCTTTT-TTCCCSEEECCSCCBCCS
T ss_pred -----cccCCCEEECCCCcCCccCHHH----hcCcCCCCEEECCCCcCC-----ccChhhc-ccccCCeEEeCCCCccCc
Confidence 2456666666666665432221 233466777777777766 3444555 56677777777776642
Q ss_pred HHHHHHHHHHhcCCCccEEEecCC
Q 009168 456 AGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 456 ~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
-+...+...+...+....+...++
T Consensus 211 c~~~~l~~wl~~~~~~~~~~~~~~ 234 (290)
T 1p9a_G 211 CEILYFRRWLQDNAENVYVWKQGV 234 (290)
T ss_dssp GGGHHHHHHHHHTGGGBCCCCTTC
T ss_pred CccHHHHHHHHhCcccceeecccc
Confidence 233345555555444333333333
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.5e-18 Score=167.76 Aligned_cols=192 Identities=19% Similarity=0.200 Sum_probs=116.0
Q ss_pred CccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHh
Q 009168 272 KLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEV 350 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 350 (541)
+|++|+|++|.+.. ++ ..+..+++|++|++++|.++.. ....+..+++|++|+|++|.++... ...
T Consensus 38 ~l~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~~i----~~~~~~~l~~L~~L~l~~n~l~~~~----~~~ 104 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS-----LPSKAFHRLTKLRLLYLNDNKLQTL----PAGIFKELKNLETLWVTDNKLQALP----IGV 104 (270)
T ss_dssp TCSEEECCSSCCSC-----CCTTSSSSCTTCCEEECCSSCCSCC----CTTTTSSCTTCCEEECCSSCCCCCC----TTT
T ss_pred CCCEEECcCCCCCe-----eCHHHhcCCCCCCEEECCCCccCee----ChhhhcCCCCCCEEECCCCcCCcCC----HhH
Confidence 45555555555543 22 2344555666666666655432 1122355666677777766665431 234
Q ss_pred cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAI 430 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~ 430 (541)
+..+++|++|++++|.++...+..+. .+++|+.|+|++|.++...... +..+++|++|+|++|.++....
T Consensus 105 ~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~- 174 (270)
T 2o6q_A 105 FDQLVNLAELRLDRNQLKSLPPRVFD-----SLTKLTYLSLGYNELQSLPKGV----FDKLTSLKELRLYNNQLKRVPE- 174 (270)
T ss_dssp TTTCSSCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT-
T ss_pred cccccCCCEEECCCCccCeeCHHHhC-----cCcCCCEEECCCCcCCccCHhH----ccCCcccceeEecCCcCcEeCh-
Confidence 55667777777777776654333232 2577777777777776543322 3445788888888888775322
Q ss_pred HHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh--HHHHHHHHHh
Q 009168 431 LIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE--GIDEVKEILK 494 (541)
Q Consensus 431 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~ 494 (541)
..+. .+++|++|+|++|.|+.. ....+..+++|+.|+|++|++... ++..+.+.+.
T Consensus 175 ---~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~ 232 (270)
T 2o6q_A 175 ---GAFD-KLTELKTLKLDNNQLKRV----PEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLK 232 (270)
T ss_dssp ---TTTT-TCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCSSSSSHHHHHHHH
T ss_pred ---hHhc-cCCCcCEEECCCCcCCcC----CHHHhccccCCCEEEecCCCeeCCCccHHHHHHHHH
Confidence 2233 678899999999988864 233466788899999999987543 3444444443
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=9e-19 Score=169.56 Aligned_cols=129 Identities=16% Similarity=0.186 Sum_probs=59.3
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+|+.|++++|.++.. ..+..+++|++|+|++|.+.+. ..+..+++|++|++++|.++.. .+..+
T Consensus 42 ~L~~L~l~~~~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~n~l~~~----~~~~~ 105 (272)
T 3rfs_A 42 SIDQIIANNSDIKSV------QGIQYLPNVRYLALGGNKLHDI------SALKELTNLTYLILTGNQLQSL----PNGVF 105 (272)
T ss_dssp TCCEEECTTSCCCCC------TTGGGCTTCCEEECTTSCCCCC------GGGTTCTTCCEEECTTSCCCCC----CTTTT
T ss_pred ceeeeeeCCCCcccc------cccccCCCCcEEECCCCCCCCc------hhhcCCCCCCEEECCCCccCcc----ChhHh
Confidence 556666666655432 1234455566666666555442 1234445555555555555431 11223
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
..+++|++|++++|+++.. .+..+..+++|++|++++|.++... +..+..+++|+.|++++|.++
T Consensus 106 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLP----KGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccC----HHHhccCccCCEEECCCCCcC
Confidence 4445555555555554432 1112344445555555555444321 122334444444555444444
No 94
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=9.9e-19 Score=169.29 Aligned_cols=178 Identities=20% Similarity=0.188 Sum_probs=91.7
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKA 322 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 322 (541)
++|+.|++++|.+... ..+..+++|++|++++|.+.. + ..+..+++|++|++++|.++.. .+..
T Consensus 41 ~~L~~L~l~~~~i~~~------~~l~~l~~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~l~~~----~~~~ 104 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV------QGIQYLPNVRYLALGGNKLHD-----I-SALKELTNLTYLILTGNQLQSL----PNGV 104 (272)
T ss_dssp TTCCEEECTTSCCCCC------TTGGGCTTCCEEECTTSCCCC-----C-GGGTTCTTCCEEECTTSCCCCC----CTTT
T ss_pred cceeeeeeCCCCcccc------cccccCCCCcEEECCCCCCCC-----c-hhhcCCCCCCEEECCCCccCcc----ChhH
Confidence 6677777777766542 123445677777777776664 2 2455666666666666666532 1222
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..+++|++|+|++|.++.. .+..+..+++|+.|++++|.++...+..+. .+++|+.|++++|.+++..+.
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSL----PDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-----KLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTT
T ss_pred hcCCcCCCEEECCCCcCCcc----CHHHhccCCCCCEEECCCCccCccCHHHhc-----cCccCCEEECCCCCcCccCHH
Confidence 45566666666666666542 123345556666666666655543222121 135555555555555533221
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
. +..+++|++|+|++|.++... +..+. .+++|+.|++++|.+.
T Consensus 176 ~----~~~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 176 V----FDKLTQLKDLRLYQNQLKSVP----DGVFD-RLTSLQYIWLHDNPWD 218 (272)
T ss_dssp T----TTTCTTCCEEECCSSCCSCCC----TTTTT-TCTTCCEEECCSSCBC
T ss_pred H----hcCCccCCEEECCCCcCCccC----HHHHh-CCcCCCEEEccCCCcc
Confidence 1 222355555555555554311 11122 4455555555555443
No 95
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.68 E-value=3.4e-16 Score=140.86 Aligned_cols=146 Identities=17% Similarity=0.219 Sum_probs=100.4
Q ss_pred HHHHhhcCCCcCEEEccCC-CCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCC
Q 009168 319 LAKALGQCTHLKKLDLRDN-MFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDIT 397 (541)
Q Consensus 319 l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 397 (541)
+...+...+.|++|+|++| .|++.++..++.+|..++.|+.|+|++|.|++.+...++.+|+.+ +.|++|+|++|.|+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N-~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETS-PSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHC-SSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcC-CccCeEecCCCcCC
Confidence 4455556666777777664 677777777777777777777777777777777777777777665 67777777777777
Q ss_pred HHHHHHHHHHHhhCCCccEEEccCC---CCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcC
Q 009168 398 AKAASSLAACIALKQFLTKLNLAEN---ELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK 468 (541)
Q Consensus 398 ~~~~~~l~~~l~~~~~L~~L~Ls~n---~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 468 (541)
+.+...++.++..+++|++|+|++| .+++.|...|++++. .+++|+.|+++.|.++.. ..++.++..+
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~-~N~tL~~L~l~~~~~g~~--~~ia~aL~~N 182 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIE-ENESLLRVGISFASMEAR--HRVSEALERN 182 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHH-HCSSCCEEECCCCCHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHH-hCCCcCeEeccCCCccHH--HHHHHHHHhc
Confidence 7777777777777777777777654 567777777777777 777777777776654432 2355555443
No 96
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.2e-18 Score=166.71 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=67.7
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHH
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALA 376 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 376 (541)
.+++|++|++++|+++... +..+..+++|++|++++|.++... +..+..+++|+.|+|++|.++......+.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALP----IGVFDQLVNLAELRLDRNQLKSLP----PRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp SCTTCCEEECCSSCCCCCC----TTTTTTCSSCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCCEEECCCCcCCcCC----HhHcccccCCCEEECCCCccCeeC----HHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 3444444444444443221 112344455555555555554421 23344555566666666655543222221
Q ss_pred HHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 377 GALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 377 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
.+++|+.|++++|.++...+.. +..+++|++|+|++|.++.... ..+. .+++|+.|+|++|.+..
T Consensus 155 -----~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 155 -----KLTSLKELRLYNNQLKRVPEGA----FDKLTELKTLKLDNNQLKRVPE----GAFD-SLEKLKMLQLQENPWDC 219 (270)
T ss_dssp -----TCTTCCEEECCSSCCSCCCTTT----TTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSCBCC
T ss_pred -----CCcccceeEecCCcCcEeChhH----hccCCCcCEEECCCCcCCcCCH----HHhc-cccCCCEEEecCCCeeC
Confidence 2456666666666655433222 2334667777777776663211 1223 56777777777776543
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=1.1e-16 Score=156.36 Aligned_cols=152 Identities=21% Similarity=0.229 Sum_probs=75.7
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHH
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEAL 375 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 375 (541)
..+++|++|++++|+++.. +. +..+++|++|++++|.++. ...+..+++|+.|++++|.+++. ..+
T Consensus 65 ~~l~~L~~L~L~~n~l~~~-----~~-l~~l~~L~~L~l~~n~l~~------~~~l~~l~~L~~L~L~~n~i~~~--~~l 130 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDI-----KP-LANLKNLGWLFLDENKVKD------LSSLKDLKKLKSLSLEHNGISDI--NGL 130 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC-----GG-GTTCTTCCEEECCSSCCCC------GGGGTTCTTCCEEECTTSCCCCC--GGG
T ss_pred hcCCCCCEEEccCCccCCC-----cc-cccCCCCCEEECCCCcCCC------ChhhccCCCCCEEECCCCcCCCC--hhh
Confidence 3344444444444444432 11 3444555555555555444 12244455555555555555432 111
Q ss_pred HHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 376 AGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 376 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
. .+++|+.|++++|.+++. ..+..+++|++|+|++|.+++... +. .+++|++|++++|.|++
T Consensus 131 ~-----~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~~~~~------l~-~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 131 V-----HLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQISDIVP------LA-GLTKLQNLYLSKNHISD 192 (291)
T ss_dssp G-----GCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCCCGG------GT-TCTTCCEEECCSSCCCB
T ss_pred c-----CCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccccchh------hc-CCCccCEEECCCCcCCC
Confidence 1 135555555555555543 123444666666666666654321 33 56666666666666665
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCCCChhH
Q 009168 456 AGARLLAQVAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 456 ~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g 485 (541)
. + .+..+++|+.|++++|+++..+
T Consensus 193 l-----~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 193 L-----R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp C-----G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred C-----h-hhccCCCCCEEECcCCcccCCc
Confidence 2 1 2455666666666666655433
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=5e-17 Score=149.23 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHH
Q 009168 299 PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGA 378 (541)
Q Consensus 299 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 378 (541)
++|++|++++|.++. ++ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+++..+..+..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~- 110 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATN------YNPISGLSNLERLRIMGKDVTSDKIPNLSG- 110 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSC------CGGGTTCTTCCEEEEECTTCBGGGSCCCTT-
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCc------chhhhcCCCCCEEEeECCccCcccChhhcC-
Confidence 345555555555442 11 24445555555555554443 224445555555555555555433333322
Q ss_pred HhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC-CChhHHHHHHHHhhhcCCCccEEEccCCCCChHH
Q 009168 379 LKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE-LQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAG 457 (541)
Q Consensus 379 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~ 457 (541)
+++|+.|++++|.+++..+..+ ..+++|++|+|++|. +++. + .+. .+++|++|++++|.|++.
T Consensus 111 ----l~~L~~L~Ls~n~i~~~~~~~l----~~l~~L~~L~L~~n~~i~~~-----~-~l~-~l~~L~~L~l~~n~i~~~- 174 (197)
T 4ezg_A 111 ----LTSLTLLDISHSAHDDSILTKI----NTLPKVNSIDLSYNGAITDI-----M-PLK-TLPELKSLNIQFDGVHDY- 174 (197)
T ss_dssp ----CTTCCEEECCSSBCBGGGHHHH----TTCSSCCEEECCSCTBCCCC-----G-GGG-GCSSCCEEECTTBCCCCC-
T ss_pred ----CCCCCEEEecCCccCcHhHHHH----hhCCCCCEEEccCCCCcccc-----H-hhc-CCCCCCEEECCCCCCcCh-
Confidence 4556666666666655444333 233666666666665 5532 1 233 566666666666666652
Q ss_pred HHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 458 ARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 458 ~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
. .+..+++|++|++++|+|++
T Consensus 175 ----~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 175 ----R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ----T-TGGGCSSCCEEEECBC----
T ss_pred ----H-HhccCCCCCEEEeeCcccCC
Confidence 2 45566667777777776654
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=2e-17 Score=158.10 Aligned_cols=194 Identities=18% Similarity=0.164 Sum_probs=121.3
Q ss_pred CccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc
Q 009168 272 KLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL 351 (541)
Q Consensus 272 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 351 (541)
..++++++++.+.. ++..+. +.++.|++++|+++.. .+..+..+++|++|+|++|.++.. .+..+
T Consensus 15 ~~~~l~~~~~~l~~-----~p~~~~--~~l~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-----VPSGIP--ADTEKLDLQSTGLATL----SDATFRGLTKLTWLNLDYNQLQTL----SAGVF 79 (251)
T ss_dssp GGTEEECTTCCCSS-----CCSCCC--TTCCEEECTTSCCCCC----CTTTTTTCTTCCEEECTTSCCCCC----CTTTT
T ss_pred CCeEEecCCCCccc-----cCCCCC--CCCCEEEccCCCcCcc----CHhHhcCcccCCEEECCCCcCCcc----CHhHh
Confidence 34555666555554 333222 4566666666666543 122355667777777777776653 13445
Q ss_pred ccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHH
Q 009168 352 PAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAIL 431 (541)
Q Consensus 352 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 431 (541)
..+++|+.|+|++|.++...+..+. .+++|++|+|++|.|+...+.. +..+++|++|+|++|.|+....
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~~-- 148 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFD-----HLTQLDKLYLGGNQLKSLPSGV----FDRLTKLKELRLNTNQLQSIPA-- 148 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTT-----TCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCT--
T ss_pred ccCCcCCEEECCCCcccccChhHhc-----ccCCCCEEEcCCCcCCCcChhH----hccCCcccEEECcCCcCCccCH--
Confidence 6667777777777777643333222 2577777777777777543322 3345788888888888874221
Q ss_pred HHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh--HHHHHHHHHhcCcc
Q 009168 432 IGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE--GIDEVKEILKHSLD 498 (541)
Q Consensus 432 l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~ 498 (541)
..+. .+++|++|+|++|.|+.. ....+..+++|++|+|++|+++.. .+..+...+.....
T Consensus 149 --~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~ 210 (251)
T 3m19_A 149 --GAFD-KLTNLQTLSLSTNQLQSV----PHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWIRENSN 210 (251)
T ss_dssp --TTTT-TCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHHHHSGG
T ss_pred --HHcC-cCcCCCEEECCCCcCCcc----CHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHHHhccc
Confidence 2344 678889999999988875 334566778899999999988764 46666666655433
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.8e-16 Score=154.88 Aligned_cols=123 Identities=16% Similarity=0.202 Sum_probs=58.6
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHh
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIV 295 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 295 (541)
+|+.|++++|.++.. ..+..+++|++|+|++|.+++... +..+++|++|++++|.+.. ++ .+
T Consensus 47 ~L~~L~l~~~~i~~~------~~~~~l~~L~~L~L~~n~l~~~~~------l~~l~~L~~L~l~~n~l~~-----~~-~l 108 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV------QGIQYLPNVTKLFLNGNKLTDIKP------LANLKNLGWLFLDENKVKD-----LS-SL 108 (291)
T ss_dssp TCCEEECTTSCCCCC------TTGGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-----GG-GG
T ss_pred cccEEEccCCCcccC------hhHhcCCCCCEEEccCCccCCCcc------cccCCCCCEEECCCCcCCC-----Ch-hh
Confidence 566666666665543 124445556666666665554211 3444555555555555554 11 24
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
..+++|++|++++|+++.. ..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++
T Consensus 109 ~~l~~L~~L~L~~n~i~~~------~~l~~l~~L~~L~l~~n~l~~~------~~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI------TVLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC------GGGGGCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCC
T ss_pred ccCCCCCEEECCCCcCCCC------hhhcCCCCCCEEEccCCcCCcc------hhhccCCCCCEEEccCCccc
Confidence 4445555555555554431 1234444444444444444431 23334444444444444443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=5.8e-16 Score=142.09 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=96.3
Q ss_pred CCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHh
Q 009168 271 EKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEV 350 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 350 (541)
++|+.|++++|.+.+ ++ .+..+++|++|++++|.+... ..+..+++|++|++++|.++... +..
T Consensus 44 ~~L~~L~l~~n~i~~-----l~-~l~~l~~L~~L~l~~n~~~~~------~~l~~l~~L~~L~l~~n~l~~~~----~~~ 107 (197)
T 4ezg_A 44 NSLTYITLANINVTD-----LT-GIEYAHNIKDLTINNIHATNY------NPISGLSNLERLRIMGKDVTSDK----IPN 107 (197)
T ss_dssp HTCCEEEEESSCCSC-----CT-TGGGCTTCSEEEEESCCCSCC------GGGTTCTTCCEEEEECTTCBGGG----SCC
T ss_pred CCccEEeccCCCccC-----hH-HHhcCCCCCEEEccCCCCCcc------hhhhcCCCCCEEEeECCccCccc----Chh
Confidence 355555555555553 33 355566666666666665532 23566777777777777776532 455
Q ss_pred cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCC-CCHHHHHHHHHHHhhCCCccEEEccCCCCChhHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGND-ITAKAASSLAACIALKQFLTKLNLAENELQDEGA 429 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~ 429 (541)
+..+++|+.|++++|.+++..+..+.. +++|++|++++|. ++... .+..+++|++|++++|.+++..
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~-----l~~L~~L~L~~n~~i~~~~------~l~~l~~L~~L~l~~n~i~~~~- 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINT-----LPKVNSIDLSYNGAITDIM------PLKTLPELKSLNIQFDGVHDYR- 175 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTT-----CSSCCEEECCSCTBCCCCG------GGGGCSSCCEEECTTBCCCCCT-
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhh-----CCCCCEEEccCCCCccccH------hhcCCCCCCEEECCCCCCcChH-
Confidence 667777888888888777666655543 5778888888886 66532 2555678888888888887522
Q ss_pred HHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 430 ILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 430 ~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
.+. .+++|++|++++|+|++
T Consensus 176 -----~l~-~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 176 -----GIE-DFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp -----TGG-GCSSCCEEEECBC----
T ss_pred -----Hhc-cCCCCCEEEeeCcccCC
Confidence 344 67888888888887764
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.58 E-value=2.9e-16 Score=166.45 Aligned_cols=193 Identities=18% Similarity=0.164 Sum_probs=127.4
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
.+|+.|+|++|.++.. +..+ .++|++|+|++|.|+... ..+++|++|++++|.++. ++.
T Consensus 59 ~~L~~L~Ls~n~L~~l-----p~~l--~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~-----ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL-----PDNL--PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLST-----LPE- 117 (571)
T ss_dssp TTCSEEECCSSCCSCC-----CSCC--CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSC-----CCC-
T ss_pred CCccEEEeCCCCCCcc-----CHhH--cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCC-----cch-
Confidence 3788899998888752 1111 267888888888887421 234788888888888876 444
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA 374 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~ 374 (541)
+.. +|++|++++|.++. ++. .+++|+.|+|++|.|+.. +. .+++|+.|+|++|.|+. .+.
T Consensus 118 l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 118 LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC-cch-
Confidence 332 78888888888875 222 567888888888887752 32 45678888888888775 222
Q ss_pred HHHHHhhcCCCccEEEecCCCCCHHHHHHHHH-HHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 375 LAGALKECAPSLEVLDLAGNDITAKAASSLAA-CIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 375 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
+ .++|+.|+|++|.|+.... +.. +....+.|+.|+|++|.|+ .|+..+. .+++|+.|+|++|.|
T Consensus 178 l-------~~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-----~lp~~l~-~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 178 L-------PESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-----HIPENIL-SLDPTCTIILEDNPL 242 (571)
T ss_dssp C-------CTTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-----CCCGGGG-GSCTTEEEECCSSSC
T ss_pred h-------hCCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-----ecCHHHh-cCCCCCEEEeeCCcC
Confidence 2 1678888888888774221 211 1111233488888888887 4556666 578888888888888
Q ss_pred ChHHHHHHHH
Q 009168 454 KRAGARLLAQ 463 (541)
Q Consensus 454 ~~~~~~~l~~ 463 (541)
+......+..
T Consensus 243 ~~~~p~~l~~ 252 (571)
T 3cvr_A 243 SSRIRESLSQ 252 (571)
T ss_dssp CHHHHHHHHH
T ss_pred CCcCHHHHHH
Confidence 8775444443
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.2e-15 Score=163.38 Aligned_cols=170 Identities=22% Similarity=0.262 Sum_probs=117.8
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKA 322 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 322 (541)
++|+.|++++|.+.... .+..+++|+.|+|++|.+.. ++. +..+++|+.|+|++|.+... ..
T Consensus 43 ~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~-----~~~-l~~l~~L~~L~Ls~N~l~~l------~~ 104 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTD-----IKP-LTNLKNLGWLFLDENKIKDL------SS 104 (605)
T ss_dssp TTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCC-----CGG-GGGCTTCCEEECCSSCCCCC------TT
T ss_pred CCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCC-----Chh-hccCCCCCEEECcCCCCCCC------hh
Confidence 77888888888876531 24556788888888888776 332 67778888888888887642 24
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..+++|+.|+|++|.+.. ...+..+++|+.|+|++|.+++. ..+ ..+++|+.|+|++|.|++..+
T Consensus 105 l~~l~~L~~L~Ls~N~l~~------l~~l~~l~~L~~L~Ls~N~l~~l--~~l-----~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 105 LKDLKKLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDI--TVL-----SRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp STTCTTCCEEECTTSCCCC------CGGGGGCTTCSEEECCSSCCCCC--GGG-----GSCTTCSEEECCSSCCCCCGG-
T ss_pred hccCCCCCEEEecCCCCCC------CccccCCCccCEEECCCCccCCc--hhh-----cccCCCCEEECcCCcCCCchh-
Confidence 6677788888888888776 24466777888888888877753 222 235777888888777776543
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
+..+++|+.|+|++|.|++. ..+. .+++|+.|+|++|.+...
T Consensus 171 -----l~~l~~L~~L~Ls~N~i~~l------~~l~-~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -----LAGLTKLQNLYLSKNHISDL------RALA-GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -----GTTCTTCCEEECCSSCCCBC------GGGT-TCTTCSEEECCSEEEECC
T ss_pred -----hccCCCCCEEECcCCCCCCC------hHHc-cCCCCCEEEccCCcCcCC
Confidence 44557777777777777752 2344 677777777777776653
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=2.4e-17 Score=156.33 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=72.6
Q ss_pred hhcCCCccEEEecC-CCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCC---EEEcccC-CCCh
Q 009168 295 VKHSPALEDFRCSS-TRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLT---EVYLSYL-NLED 369 (541)
Q Consensus 295 l~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~---~L~L~~n-~l~~ 369 (541)
+..+++|++|++++ |.++... +..+..+++|++|++++|.++. ++. +..+++|+ .|++++| .++.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~----~~~f~~l~~L~~L~l~~n~l~~-----lp~-~~~l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYID----PDALKELPLLKFLGIFNTGLKM-----FPD-LTKVYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEEC----TTSEECCTTCCEEEEEEECCCS-----CCC-CTTCCBCCSEEEEEEESCTTCCE
T ss_pred cCCCcCCcEEECCCCCCeeEcC----HHHhCCCCCCCEEeCCCCCCcc-----ccc-cccccccccccEEECCCCcchhh
Confidence 33444555555554 4444221 1223445555555555555543 122 44444444 5555555 5543
Q ss_pred hHHHHHHHHHhhcCCCcc-EEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC-CChhHHHHHHHHhhhcC-CCccEE
Q 009168 370 EGAEALAGALKECAPSLE-VLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE-LQDEGAILIGKSLEEGH-GQLIEI 446 (541)
Q Consensus 370 ~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~-~~L~~L 446 (541)
.....+. .+++|+ .|++++|.++...... +. .++|+.|+|++|. ++.... ..+. .+ ++|++|
T Consensus 146 i~~~~~~-----~l~~L~~~L~l~~n~l~~i~~~~----~~-~~~L~~L~L~~n~~l~~i~~----~~~~-~l~~~L~~L 210 (239)
T 2xwt_C 146 IPVNAFQ-----GLCNETLTLKLYNNGFTSVQGYA----FN-GTKLDAVYLNKNKYLTVIDK----DAFG-GVYSGPSLL 210 (239)
T ss_dssp ECTTTTT-----TTBSSEEEEECCSCCCCEECTTT----TT-TCEEEEEECTTCTTCCEECT----TTTT-TCSBCCSEE
T ss_pred cCccccc-----chhcceeEEEcCCCCCcccCHhh----cC-CCCCCEEEcCCCCCcccCCH----HHhh-ccccCCcEE
Confidence 3222221 135566 6666666555322111 11 1456666666663 553211 1222 45 667777
Q ss_pred EccCCCCChHHHHHHHHHHhcCCCccEEEecCC
Q 009168 447 DLSTNSMKRAGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 447 ~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
++++|.|+.. +.. ..++|+.|+++++
T Consensus 211 ~l~~N~l~~l-----~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTSVTAL-----PSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCCCCCC-----CCT--TCTTCSEEECTTC
T ss_pred ECCCCccccC-----Chh--HhccCceeeccCc
Confidence 7777766652 211 3456677776655
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=9.3e-16 Score=164.29 Aligned_cols=189 Identities=17% Similarity=0.167 Sum_probs=149.8
Q ss_pred ccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHH
Q 009168 184 LTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAI 263 (541)
Q Consensus 184 L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 263 (541)
+..++|+.+.+.+... +..+ .+|+.|++++|.+.... .+..+++|+.|+|++|.++....
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L---------~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~Ls~N~l~~~~~--- 82 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNEL---------NSIDQIIANNSDIKSVQ------GIQYLPNVTKLFLNGNKLTDIKP--- 82 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHH---------TTCCCCBCTTCCCCCCT------TGGGCTTCCEEECTTSCCCCCGG---
T ss_pred HHHHhccCCCcccccc--hhcC---------CCCCEEECcCCCCCCCh------HHccCCCCCEEEeeCCCCCCChh---
Confidence 3444566665555432 2233 48999999999988642 36778999999999999887532
Q ss_pred HHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchH
Q 009168 264 LELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEA 343 (541)
Q Consensus 264 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 343 (541)
+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|++... ..+..+++|+.|+|++|.++..
T Consensus 83 ---l~~l~~L~~L~Ls~N~l~~-----l~-~l~~l~~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~l- 146 (605)
T 1m9s_A 83 ---LTNLKNLGWLFLDENKIKD-----LS-SLKDLKKLKSLSLEHNGISDI------NGLVHLPQLESLYLGNNKITDI- 146 (605)
T ss_dssp ---GGGCTTCCEEECCSSCCCC-----CT-TSTTCTTCCEEECTTSCCCCC------GGGGGCTTCSEEECCSSCCCCC-
T ss_pred ---hccCCCCCEEECcCCCCCC-----Ch-hhccCCCCCEEEecCCCCCCC------ccccCCCccCEEECCCCccCCc-
Confidence 5667999999999999986 33 678899999999999999863 3478899999999999999872
Q ss_pred HHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCC
Q 009168 344 GVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENE 423 (541)
Q Consensus 344 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 423 (541)
..+..+++|+.|+|++|.+++..+ + ..+++|+.|+|++|.|++.. .+..+++|+.|+|++|.
T Consensus 147 -----~~l~~l~~L~~L~Ls~N~l~~~~~--l-----~~l~~L~~L~Ls~N~i~~l~------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 147 -----TVLSRLTKLDTLSLEDNQISDIVP--L-----AGLTKLQNLYLSKNHISDLR------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -----GGGGSCTTCSEEECCSSCCCCCGG--G-----TTCTTCCEEECCSSCCCBCG------GGTTCTTCSEEECCSEE
T ss_pred -----hhhcccCCCCEEECcCCcCCCchh--h-----ccCCCCCEEECcCCCCCCCh------HHccCCCCCEEEccCCc
Confidence 678889999999999999987544 3 23799999999999998742 25667999999999998
Q ss_pred CCh
Q 009168 424 LQD 426 (541)
Q Consensus 424 l~~ 426 (541)
+..
T Consensus 209 l~~ 211 (605)
T 1m9s_A 209 CLN 211 (605)
T ss_dssp EEC
T ss_pred CcC
Confidence 874
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.56 E-value=7.4e-15 Score=147.01 Aligned_cols=135 Identities=25% Similarity=0.247 Sum_probs=89.6
Q ss_pred CCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecC--CC-CCHHHHHHHHHHHh--hCCCccEEEccCCCCChhH
Q 009168 354 FPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAG--ND-ITAKAASSLAACIA--LKQFLTKLNLAENELQDEG 428 (541)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~--n~-l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~l~~~g 428 (541)
+++|++|+|..|.++...+..++. ..+|+|++|+|+. |. ....+...++..+. .+++|++|+|++|.+++.+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~---~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILG---SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHH---SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHH---ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence 456666666666666555554442 1356677666642 11 11111112222222 3578888888888888777
Q ss_pred HHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChhHHHHHHHHH
Q 009168 429 AILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDEGIDEVKEIL 493 (541)
Q Consensus 429 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~g~~~l~~~l 493 (541)
+..++.+ . .+++|++|+|+.|.|++.|+..++..+..+++|+.|+|++|.|++.++..+.+++
T Consensus 269 ~~~la~a-~-~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 269 VEMFLES-D-ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp HHHHHHC-S-SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred HHHHHhC-c-cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 6666543 2 4778888888888888888888887777788888888888888888888888866
No 107
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.54 E-value=1.4e-14 Score=145.00 Aligned_cols=221 Identities=15% Similarity=0.202 Sum_probs=159.7
Q ss_pred CCccEEEecCCCCCH----HHHHHHHHhcCCCCCccEEEcCCCCCChH-----HHHHHHHHhhcCCCccEEEecCCC-CC
Q 009168 243 NNLEELHLMNDGISE----EAAQAILELIPSTEKLKVLHFHNNMTGDE-----GAVAISEIVKHSPALEDFRCSSTR-IG 312 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~l~~~~~L~~L~L~~n~-i~ 312 (541)
..++.|.+....+.+ .....+...+...++|+.|.+..+..... ....+...+..+|+|+.|+|++|. +.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 347899998776542 23344444344458999999976532110 001255677788999999999873 32
Q ss_pred hhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEccc--CC-CChhHHHHHHHHHh-hcCCCccE
Q 009168 313 AEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSY--LN-LEDEGAEALAGALK-ECAPSLEV 388 (541)
Q Consensus 313 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~--n~-l~~~~~~~l~~~l~-~~~~~L~~ 388 (541)
++. + ..++|++|+|..|.++..++..+.. ..+|+|++|+|+. |. ..+.++..+...+. ..+|+|++
T Consensus 187 ------l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~--~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 187 ------IGK-K-PRPNLKSLEIISGGLPDSVVEDILG--SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp ------CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH--SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred ------ecc-c-cCCCCcEEEEecCCCChHHHHHHHH--ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 222 2 3789999999999998877555542 3689999999864 22 22222222333222 23689999
Q ss_pred EEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcC
Q 009168 389 LDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNK 468 (541)
Q Consensus 389 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~ 468 (541)
|+|.+|.+++.++..++.. ..+++|++|+|+.|.|++.|+..++.++. .+++|+.|+|++|.|++.++..++.++
T Consensus 257 L~L~~~~i~~~~~~~la~a-~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~~L~~L~L~~n~i~d~~~~~l~~al--- 331 (362)
T 2ra8_A 257 LGIVDAEEQNVVVEMFLES-DILPQLETMDISAGVLTDEGARLLLDHVD-KIKHLKFINMKYNYLSDEMKKELQKSL--- 331 (362)
T ss_dssp EEEESCTTHHHHHHHHHHC-SSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHTTCSEEECCSBBCCHHHHHHHHHHC---
T ss_pred EeCCCCCCchHHHHHHHhC-ccCCCCCEEECCCCCCChHHHHHHHhhcc-cCCcceEEECCCCcCCHHHHHHHHHHc---
Confidence 9999999998777666653 34689999999999999999999998887 899999999999999999999988765
Q ss_pred CCccEEEecCCC
Q 009168 469 PGLKMLNINGNF 480 (541)
Q Consensus 469 ~~L~~L~L~~N~ 480 (541)
...+++++++
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 4568998887
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=3.5e-15 Score=158.18 Aligned_cols=193 Identities=22% Similarity=0.221 Sum_probs=111.3
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
.+|+.|+|++|.++..+... .++|++|+|++|.|+... ..+++|++|+|++|.|++. +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l------------~~~L~~L~Ls~N~l~~ip--------~~l~~L~~L~Ls~N~l~~i-p- 116 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL------------PPQITVLEITQNALISLP--------ELPASLEYLDACDNRLSTL-P- 116 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC------------CTTCSEEECCSSCCSCCC--------CCCTTCCEEECCSSCCSCC-C-
T ss_pred CCccEEEeCCCCCCccCHhH------------cCCCCEEECcCCCCcccc--------cccCCCCEEEccCCCCCCc-c-
Confidence 36777777776666543211 136777777777776321 2346677777777776652 1
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCc
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGV 341 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 341 (541)
. +.. +|++|+|++|.++. ++. .+++|+.|++++|.++.. +. .+++|+.|+|++|.|+.
T Consensus 117 ---~-l~~--~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~l~~l-----p~---~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 117 ---E-LPA--SLKHLDVDNNQLTM-----LPE---LPALLEYINADNNQLTML-----PE---LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp ---C-CCT--TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCC-----CC---CCTTCCEEECCSSCCSC
T ss_pred ---h-hhc--CCCEEECCCCcCCC-----CCC---cCccccEEeCCCCccCcC-----CC---cCCCcCEEECCCCCCCC
Confidence 1 221 67777777777665 333 456777777777777642 21 45677777777777765
Q ss_pred hHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccC
Q 009168 342 EAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAE 421 (541)
Q Consensus 342 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 421 (541)
++. +. ++|+.|+|++|.|+.. +. +...+....+.|+.|+|++|.|+.. +. .+..+++|+.|+|++
T Consensus 175 -----lp~-l~--~~L~~L~Ls~N~L~~l-p~-~~~~L~~~~~~L~~L~Ls~N~l~~l-p~----~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 175 -----LPE-LP--ESLEALDVSTNLLESL-PA-VPVRNHHSEETEIFFRCRENRITHI-PE----NILSLDPTCTIILED 239 (571)
T ss_dssp -----CCC-CC--TTCCEEECCSSCCSSC-CC-CC--------CCEEEECCSSCCCCC-CG----GGGGSCTTEEEECCS
T ss_pred -----cch-hh--CCCCEEECcCCCCCch-hh-HHHhhhcccccceEEecCCCcceec-CH----HHhcCCCCCEEEeeC
Confidence 233 33 6777777777777632 22 2211111223447777777777742 22 233357777777777
Q ss_pred CCCChhHHHHHH
Q 009168 422 NELQDEGAILIG 433 (541)
Q Consensus 422 n~l~~~g~~~l~ 433 (541)
|.++...+..+.
T Consensus 240 N~l~~~~p~~l~ 251 (571)
T 3cvr_A 240 NPLSSRIRESLS 251 (571)
T ss_dssp SSCCHHHHHHHH
T ss_pred CcCCCcCHHHHH
Confidence 777765554444
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=2.3e-16 Score=150.63 Aligned_cols=63 Identities=25% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
++|+.|+|++|.|+...+.. +..+++|++|+|++|.++... ...+. .+++|+.|+|++|.+..
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGA----FDKLTNLQTLSLSTNQLQSVP----HGAFD-RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCC----TTTTT-TCTTCCEEECCSCCBCT
T ss_pred CcccEEECcCCcCCccCHHH----cCcCcCCCEEECCCCcCCccC----HHHHh-CCCCCCEEEeeCCceeC
Confidence 44555555555444332211 222355555555555555321 11222 45556666666665543
No 110
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=3.3e-16 Score=148.35 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=136.6
Q ss_pred CCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCC-CChhHHHHHHHHhhcCCCcCEEEccC-CCCCchHHHHH
Q 009168 271 EKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTR-IGAEGGIALAKALGQCTHLKKLDLRD-NMFGVEAGVAL 347 (541)
Q Consensus 271 ~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l 347 (541)
++|++|++++|.+.. ++ ..+..+++|++|++++|+ ++... +..+..+++|++|++++ |.++...
T Consensus 31 ~~l~~L~l~~n~l~~-----i~~~~~~~l~~L~~L~l~~n~~l~~i~----~~~f~~l~~L~~L~l~~~n~l~~i~---- 97 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-----IPSHAFSNLPNISRIYVSIDVTLQQLE----SHSFYNLSKVTHIEIRNTRNLTYID---- 97 (239)
T ss_dssp TTCCEEEEESCCCSE-----ECTTTTTTCTTCCEEEEECCSSCCEEC----TTTEESCTTCCEEEEEEETTCCEEC----
T ss_pred CcccEEEEeCCcceE-----ECHHHccCCCCCcEEeCCCCCCcceeC----HhHcCCCcCCcEEECCCCCCeeEcC----
Confidence 378888888888776 33 256778899999999997 76531 23577899999999999 9998742
Q ss_pred HHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCcc---EEEecCC-CCCHHHHHHHHHHHhhCCCcc-EEEccCC
Q 009168 348 SEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLE---VLDLAGN-DITAKAASSLAACIALKQFLT-KLNLAEN 422 (541)
Q Consensus 348 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~---~L~L~~n-~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n 422 (541)
...+..+++|+.|++++|.++.. +. +. .+++|+ .|++++| .++...... +..+++|+ .|+|++|
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~l-p~-~~-----~l~~L~~L~~L~l~~N~~l~~i~~~~----~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKMF-PD-LT-----KVYSTDIFFILEITDNPYMTSIPVNA----FQGLCNETLTLKLYNN 166 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCSC-CC-CT-----TCCBCCSEEEEEEESCTTCCEECTTT----TTTTBSSEEEEECCSC
T ss_pred HHHhCCCCCCCEEeCCCCCCccc-cc-cc-----cccccccccEEECCCCcchhhcCccc----ccchhcceeEEEcCCC
Confidence 35678899999999999998862 22 22 357777 9999999 888755433 34458999 9999999
Q ss_pred CCChhHHHHHHHHhhhcCCCccEEEccCCC-CChHHHHHHHHHHhcC-CCccEEEecCCCCCh
Q 009168 423 ELQDEGAILIGKSLEEGHGQLIEIDLSTNS-MKRAGARLLAQVAVNK-PGLKMLNINGNFIPD 483 (541)
Q Consensus 423 ~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~-~~L~~L~L~~N~i~~ 483 (541)
.++.. +.... ..++|++|++++|. ++.. -...+..+ ++|+.|++++|+++.
T Consensus 167 ~l~~i-----~~~~~-~~~~L~~L~L~~n~~l~~i----~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 167 GFTSV-----QGYAF-NGTKLDAVYLNKNKYLTVI----DKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp CCCEE-----CTTTT-TTCEEEEEECTTCTTCCEE----CTTTTTTCSBCCSEEECTTCCCCC
T ss_pred CCccc-----CHhhc-CCCCCCEEEcCCCCCcccC----CHHHhhccccCCcEEECCCCcccc
Confidence 99843 23333 34899999999995 9874 23456777 899999999999875
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=6.5e-15 Score=141.53 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=6.2
Q ss_pred CCccEEEecCCCCC
Q 009168 243 NNLEELHLMNDGIS 256 (541)
Q Consensus 243 ~~L~~L~L~~n~i~ 256 (541)
++|++|++++|+++
T Consensus 41 ~~L~~L~l~~n~i~ 54 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ 54 (263)
T ss_dssp TTCSEEECTTSCCC
T ss_pred CcCcEEECcCCCcc
Confidence 44444444444443
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=5.3e-15 Score=142.13 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=38.7
Q ss_pred CccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHH
Q 009168 183 QLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQA 262 (541)
Q Consensus 183 ~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 262 (541)
++..++++++.+.+.. .+..+ .+|++|++++|.++... .+..+++|++|+|++|.+++...
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l---------~~L~~L~l~~n~i~~l~------~l~~l~~L~~L~L~~N~i~~~~~-- 80 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKEL---------SGVQNFNGDNSNIQSLA------GMQFFTNLKELHLSHNQISDLSP-- 80 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHH---------TTCSEEECTTSCCCCCT------TGGGCTTCCEEECCSSCCCCCGG--
T ss_pred HHHHHHhcCCCccccc--chhhc---------CcCcEEECcCCCcccch------HHhhCCCCCEEECCCCccCCChh--
Confidence 3455555555555443 12222 35666666666555421 23444555555555555554211
Q ss_pred HHHhcCCCCCccEEEcCCCCCCh
Q 009168 263 ILELIPSTEKLKVLHFHNNMTGD 285 (541)
Q Consensus 263 l~~~l~~~~~L~~L~Ls~n~l~~ 285 (541)
+..+++|++|++++|.++.
T Consensus 81 ----l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 81 ----LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp ----GTTCSSCCEEECCSSCCSC
T ss_pred ----hccCCCCCEEECCCCccCC
Confidence 3344555555555555443
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=4.4e-15 Score=139.61 Aligned_cols=173 Identities=20% Similarity=0.193 Sum_probs=113.1
Q ss_pred ccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHh
Q 009168 301 LEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALK 380 (541)
Q Consensus 301 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 380 (541)
.+.+++++++++. ++.. -.++|++|+|++|.++.. .+..+..+++|+.|+|++|.|+......+.
T Consensus 21 ~~~v~c~~~~l~~-----ip~~--~~~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~---- 85 (229)
T 3e6j_A 21 GTTVDCRSKRHAS-----VPAG--IPTNAQILYLHDNQITKL----EPGVFDSLINLKELYLGSNQLGALPVGVFD---- 85 (229)
T ss_dssp TTEEECTTSCCSS-----CCSC--CCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCCCCCTTTTT----
T ss_pred CCEeEccCCCcCc-----cCCC--CCCCCCEEEcCCCccCcc----CHHHhhCccCCcEEECCCCCCCCcChhhcc----
Confidence 4456666665543 2211 225677777777776653 144566677777777777777543222222
Q ss_pred hcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHH
Q 009168 381 ECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARL 460 (541)
Q Consensus 381 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~ 460 (541)
.+++|+.|+|++|.|+...... +...++|++|+|++|.|+ .++..+. .+++|++|+|++|.|+..
T Consensus 86 -~l~~L~~L~Ls~N~l~~l~~~~----~~~l~~L~~L~Ls~N~l~-----~lp~~~~-~l~~L~~L~L~~N~l~~~---- 150 (229)
T 3e6j_A 86 -SLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCCNKLT-----ELPRGIE-RLTHLTHLALDQNQLKSI---- 150 (229)
T ss_dssp -TCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCC-----SCCTTGG-GCTTCSEEECCSSCCCCC----
T ss_pred -cCCCcCEEECCCCcCCccChhH----hCcchhhCeEeccCCccc-----ccCcccc-cCCCCCEEECCCCcCCcc----
Confidence 2577788888888777543322 334588888888888888 4455565 789999999999998874
Q ss_pred HHHHHhcCCCccEEEecCCCCChh--HHHHHHHHHhcCccccccC
Q 009168 461 LAQVAVNKPGLKMLNINGNFIPDE--GIDEVKEILKHSLDVLGPL 503 (541)
Q Consensus 461 l~~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~~l~~l 503 (541)
....+..+++|+.|+|++|++... .+..+...+......+..+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~ 195 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRW 195 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEE
T ss_pred CHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccc
Confidence 334567788999999999998754 4677777776655444333
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=5.3e-15 Score=149.10 Aligned_cols=140 Identities=26% Similarity=0.232 Sum_probs=66.0
Q ss_pred cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHH
Q 009168 325 QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSL 404 (541)
Q Consensus 325 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 404 (541)
.+++|+.|+|++|.|+... +..+..+++|+.|+|++|.|+......+. .+++|+.|+|++|.|+...+..
T Consensus 62 ~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~i~~~~~~~- 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFIS----SEAFVPVPNLRYLDLSSNHLHTLDEFLFS-----DLQALEVLLLYNNHIVVVDRNA- 131 (361)
T ss_dssp CCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCEECTTT-
T ss_pred cccccCEEECCCCcCCccC----hhhccCCCCCCEEECCCCcCCcCCHHHhC-----CCcCCCEEECCCCcccEECHHH-
Confidence 4455555555555554421 22344455555555555555432222221 1355555555555555433222
Q ss_pred HHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCC--ccEEEecCCCCC
Q 009168 405 AACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPG--LKMLNINGNFIP 482 (541)
Q Consensus 405 ~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~--L~~L~L~~N~i~ 482 (541)
+..+++|+.|+|++|.|+......+ ..+. .+++|+.|+|++|.|+.... ..+..++. |+.|+|++|++.
T Consensus 132 ---~~~l~~L~~L~L~~N~l~~l~~~~~-~~~~-~l~~L~~L~L~~N~l~~l~~----~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 132 ---FEDMAQLQKLYLSQNQISRFPVELI-KDGN-KLPKLMLLDLSSNKLKKLPL----TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ---TTTCTTCCEEECCSSCCCSCCGGGT-C-----CTTCCEEECCSSCCCCCCH----HHHHHSCHHHHTTEECCSSCEE
T ss_pred ---hCCcccCCEEECCCCcCCeeCHHHh-cCcc-cCCcCCEEECCCCCCCccCH----HHhhhccHhhcceEEecCCCcc
Confidence 2233566666666666553211100 0001 45666666666666665422 22333444 366777777665
Q ss_pred h
Q 009168 483 D 483 (541)
Q Consensus 483 ~ 483 (541)
-
T Consensus 203 C 203 (361)
T 2xot_A 203 C 203 (361)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.41 E-value=4.3e-15 Score=158.17 Aligned_cols=125 Identities=24% Similarity=0.213 Sum_probs=73.7
Q ss_pred CccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHH
Q 009168 300 ALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGAL 379 (541)
Q Consensus 300 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 379 (541)
.|+.|+|++|.++. ++. +..+++|+.|+|++|.|+. ++..+..+++|+.|+|++|.|++. + .+.
T Consensus 442 ~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~--- 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLRA-----LPPALAALRCLEVLQASDNALENV-D-GVA--- 505 (567)
T ss_dssp TCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCCC-----CCGGGGGCTTCCEEECCSSCCCCC-G-GGT---
T ss_pred CceEEEecCCCCCC-----CcC-ccccccCcEeecCcccccc-----cchhhhcCCCCCEEECCCCCCCCC-c-ccC---
Confidence 46677777776664 233 6666777777777777664 455666677777777777777652 2 222
Q ss_pred hhcCCCccEEEecCCCCCHHH-HHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEc
Q 009168 380 KECAPSLEVLDLAGNDITAKA-ASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDL 448 (541)
Q Consensus 380 ~~~~~~L~~L~L~~n~l~~~~-~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~L 448 (541)
.+++|+.|+|++|.|++.. +.. +..+++|+.|+|++|.++.... .+...+. .+++|+.|++
T Consensus 506 --~l~~L~~L~Ls~N~l~~~~~p~~----l~~l~~L~~L~L~~N~l~~~~~-~~~~l~~-~lp~L~~L~l 567 (567)
T 1dce_A 506 --NLPRLQELLLCNNRLQQSAAIQP----LVSCPRLVLLNLQGNSLCQEEG-IQERLAE-MLPSVSSILT 567 (567)
T ss_dssp --TCSSCCEEECCSSCCCSSSTTGG----GGGCTTCCEEECTTSGGGGSSS-CTTHHHH-HCTTCSEEEC
T ss_pred --CCCCCcEEECCCCCCCCCCCcHH----HhcCCCCCEEEecCCcCCCCcc-HHHHHHH-HCcccCccCC
Confidence 2567777777777776543 333 3344777777777777653211 0111112 4667777654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=1.7e-14 Score=158.27 Aligned_cols=152 Identities=18% Similarity=0.122 Sum_probs=96.7
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHH
Q 009168 237 ALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGG 316 (541)
Q Consensus 237 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 316 (541)
..+..++.|+.|+|++|.+... + ..+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|+|+.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l-~----~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~--- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNI-S----ANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS--- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCC-C----GGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS---
T ss_pred hhhccCCCCcEEECCCCCCCCC-C----hhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc---
Confidence 4455667788888888877632 1 112245788888888888874 66677788888888888888872
Q ss_pred HHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCC
Q 009168 317 IALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDI 396 (541)
Q Consensus 317 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 396 (541)
++..+..+++|++|+|++|.|+. ++..|..+++|+.|+|++|.|++..+..+...- ..+..|+|++|.+
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~----~~~~~l~l~~N~l 353 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVTT-----LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKS----VTGLIFYLRDNRP 353 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCCC-----CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHH----HHHHHHHHHHCCC
T ss_pred --cChhhcCCCCCCEEECCCCCCCc-----cChhhhcCCCccEEeCCCCccCCCChHHHhhcc----hhhhHHhhccCcc
Confidence 56667788888888888888875 466677888888888888888876666554321 1122356777766
Q ss_pred CHHHHHHHHHHHhhCCCccEEEccCC
Q 009168 397 TAKAASSLAACIALKQFLTKLNLAEN 422 (541)
Q Consensus 397 ~~~~~~~l~~~l~~~~~L~~L~Ls~n 422 (541)
++..+ ..|+.|+++.|
T Consensus 354 ~~~~p----------~~l~~l~l~~n 369 (727)
T 4b8c_D 354 EIPLP----------HERRFIEINTD 369 (727)
T ss_dssp CCCCC----------CC---------
T ss_pred cCcCc----------cccceeEeecc
Confidence 64322 45667777666
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=2.1e-14 Score=134.02 Aligned_cols=147 Identities=18% Similarity=0.173 Sum_probs=80.7
Q ss_pred CcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHH
Q 009168 328 HLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAAC 407 (541)
Q Consensus 328 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 407 (541)
+|+.|+|++|.|+... +..+..+++|+.|+|++|.++...+..+.. +++|++|+|++|.|+......
T Consensus 33 ~l~~L~l~~n~i~~i~----~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-----l~~L~~L~Ls~N~l~~l~~~~---- 99 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIP----PGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSLNSLVLYGNKITELPKSL---- 99 (220)
T ss_dssp TCCEEECCSSCCCEEC----TTSSTTCTTCCEEECCSSCCCEECTTTTTT-----CSSCCEEECCSSCCCCCCTTT----
T ss_pred CCCEEECCCCcCCCcC----HhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----CcCCCEEECCCCcCCccCHhH----
Confidence 4555555555554421 224444555555555555555433333322 455666666666555332221
Q ss_pred HhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh-hHH
Q 009168 408 IALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD-EGI 486 (541)
Q Consensus 408 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~-~g~ 486 (541)
+...++|++|+|++|.|+... +..+. .+++|++|+|++|.|+.. ....+..+++|++|+|++|++.. -.+
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLR----VDAFQ-DLHNLNLLSLYDNKLQTI----AKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCC----TTTTT-TCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCCCCCCEEECCCCCCCEeC----HHHcC-CCCCCCEEECCCCcCCEE----CHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 233466777777777766422 22333 677777777777777764 23345667778888888887643 345
Q ss_pred HHHHHHHhcC
Q 009168 487 DEVKEILKHS 496 (541)
Q Consensus 487 ~~l~~~l~~~ 496 (541)
..+...+...
T Consensus 171 ~~l~~~l~~~ 180 (220)
T 2v9t_B 171 KWLADYLHTN 180 (220)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 5555555443
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=1.2e-14 Score=134.50 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=5.7
Q ss_pred CccEEEcCCCCCC
Q 009168 272 KLKVLHFHNNMTG 284 (541)
Q Consensus 272 ~L~~L~Ls~n~l~ 284 (541)
+|++|++++|.+.
T Consensus 29 ~l~~L~l~~n~l~ 41 (208)
T 2o6s_A 29 QTTYLDLETNSLK 41 (208)
T ss_dssp TCSEEECCSSCCC
T ss_pred CCcEEEcCCCccC
Confidence 4444444444443
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1.4e-15 Score=161.82 Aligned_cols=215 Identities=22% Similarity=0.185 Sum_probs=135.5
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
++|+.|+|++|.++ .++..++.+++|++|++++|.... .+...+ ..+ +..+ .++..
T Consensus 349 ~~L~~L~Ls~n~L~-----~Lp~~i~~l~~L~~L~l~~n~~l~----~l~~ll------~~~----~~~~-----~~~~~ 404 (567)
T 1dce_A 349 EQLFRCELSVEKST-----VLQSELESCKELQELEPENKWCLL----TIILLM------RAL----DPLL-----YEKET 404 (567)
T ss_dssp TTSSSCCCCHHHHH-----HHHHHHHHHHHHHHHCTTCHHHHH----HHHHHH------HHH----CTGG-----GHHHH
T ss_pred ccceeccCChhhHH-----hhHHHHHHHHHHHHhccccchhhh----hHHHHH------Hhc----cccc-----CCHHH
Confidence 46667777766654 344455555777777775542111 111110 000 0111 14455
Q ss_pred hhcCCCccEEE-ecCCCCChhHHHHHHH-Hhh--cCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChh
Q 009168 295 VKHSPALEDFR-CSSTRIGAEGGIALAK-ALG--QCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDE 370 (541)
Q Consensus 295 l~~~~~L~~L~-L~~n~i~~~~~~~l~~-~l~--~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 370 (541)
+..+++|+.|+ ++.|.+..-....+.. .+. ....|+.|+|++|.|+. ++. +..+++|+.|+|++|.|+ .
T Consensus 405 l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-----lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 405 LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-----LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-----CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred HHHHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-----CcC-ccccccCcEeecCccccc-c
Confidence 55566677776 5554432211000000 011 11369999999999987 344 888999999999999998 3
Q ss_pred HHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccC
Q 009168 371 GAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLST 450 (541)
Q Consensus 371 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~ 450 (541)
.+..+.. +++|+.|+|++|.|++. + .+..+++|+.|+|++|.|+... .+..+. .+++|+.|+|++
T Consensus 478 lp~~~~~-----l~~L~~L~Ls~N~l~~l-p-----~l~~l~~L~~L~Ls~N~l~~~~---~p~~l~-~l~~L~~L~L~~ 542 (567)
T 1dce_A 478 LPPALAA-----LRCLEVLQASDNALENV-D-----GVANLPRLQELLLCNNRLQQSA---AIQPLV-SCPRLVLLNLQG 542 (567)
T ss_dssp CCGGGGG-----CTTCCEEECCSSCCCCC-G-----GGTTCSSCCEEECCSSCCCSSS---TTGGGG-GCTTCCEEECTT
T ss_pred cchhhhc-----CCCCCEEECCCCCCCCC-c-----ccCCCCCCcEEECCCCCCCCCC---CcHHHh-cCCCCCEEEecC
Confidence 4444443 69999999999999973 2 3566799999999999998532 045566 899999999999
Q ss_pred CCCChHHHHHHHHHHhcCCCccEEEe
Q 009168 451 NSMKRAGARLLAQVAVNKPGLKMLNI 476 (541)
Q Consensus 451 n~i~~~~~~~l~~~l~~~~~L~~L~L 476 (541)
|.|+.... .+...+..+++|+.|++
T Consensus 543 N~l~~~~~-~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 543 NSLCQEEG-IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SGGGGSSS-CTTHHHHHCTTCSEEEC
T ss_pred CcCCCCcc-HHHHHHHHCcccCccCC
Confidence 99876411 12334456899999875
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=3.3e-14 Score=156.00 Aligned_cols=183 Identities=14% Similarity=0.062 Sum_probs=113.6
Q ss_pred HhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHH
Q 009168 265 ELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAG 344 (541)
Q Consensus 265 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 344 (541)
..+..++.|+.|+|++|.+.. ++..+..+++|++|+|++|.|+. ++..+..+++|+.|+|++|.|+.
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~--- 284 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN-----ISANIFKYDFLTRLYLNGNSLTE-----LPAEIKNLSNLRVLDLSHNRLTS--- 284 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC-----CCGGGGGCCSCSCCBCTTSCCSC-----CCGGGGGGTTCCEEECTTSCCSS---
T ss_pred hhhccCCCCcEEECCCCCCCC-----CChhhcCCCCCCEEEeeCCcCcc-----cChhhhCCCCCCEEeCcCCcCCc---
Confidence 445566899999999999886 66667789999999999999983 66778899999999999999985
Q ss_pred HHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCC
Q 009168 345 VALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENEL 424 (541)
Q Consensus 345 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 424 (541)
++..+..+++|+.|+|++|.|+. .+..+. .+++|+.|+|++|.|++..+..+...- ..+..|+|++|.+
T Consensus 285 --lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~-----~l~~L~~L~L~~N~l~~~~p~~~~~~~---~~~~~l~l~~N~l 353 (727)
T 4b8c_D 285 --LPAELGSCFQLKYFYFFDNMVTT-LPWEFG-----NLCNLQFLGVEGNPLEKQFLKILTEKS---VTGLIFYLRDNRP 353 (727)
T ss_dssp --CCSSGGGGTTCSEEECCSSCCCC-CCSSTT-----SCTTCCCEECTTSCCCSHHHHHHHHHH---HHHHHHHHHHCCC
T ss_pred --cChhhcCCCCCCEEECCCCCCCc-cChhhh-----cCCCccEEeCCCCccCCCChHHHhhcc---hhhhHHhhccCcc
Confidence 57788899999999999999974 343343 368999999999999988777665431 1233478899988
Q ss_pred ChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHH----HHHHHhcCCCccEEEecCCCCC
Q 009168 425 QDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARL----LAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 425 ~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~----l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
+.. ....|+.|++++|......... ....+..+..+....+++|-+.
T Consensus 354 ~~~-----------~p~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 354 EIP-----------LPHERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCC-----------CCCC-----------------------------------------CCC
T ss_pred cCc-----------CccccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 731 3467888888888211111111 2223344555667778888775
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=2.3e-14 Score=133.79 Aligned_cols=126 Identities=18% Similarity=0.163 Sum_probs=67.7
Q ss_pred cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAI 430 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~ 430 (541)
+..+++|+.|+|++|.|+......+. .+++|+.|+|++|.|+...+.. +..+++|++|+|++|.|+...
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~~~-- 121 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFE-----GASGVNEILLTSNRLENVQHKM----FKGLESLKTLMLRSNRITCVG-- 121 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCCCCCGGG----GTTCSSCCEEECTTSCCCCBC--
T ss_pred hccCCCCCEEECCCCcCCEECHHHhC-----CCCCCCEEECCCCccCccCHhH----hcCCcCCCEEECCCCcCCeEC--
Confidence 34445555555555555433222222 1355555566555555433322 233466666666666666422
Q ss_pred HHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh-hHHHHHHHHHh
Q 009168 431 LIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD-EGIDEVKEILK 494 (541)
Q Consensus 431 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~-~g~~~l~~~l~ 494 (541)
+..+. .+++|++|+|++|.|+.. .+..+..+++|+.|+|++|++.. -.+..+...+.
T Consensus 122 --~~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~ 179 (220)
T 2v70_A 122 --NDSFI-GLSSVRLLSLYDNQITTV----APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLR 179 (220)
T ss_dssp --TTSST-TCTTCSEEECTTSCCCCB----CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHH
T ss_pred --HhHcC-CCccCCEEECCCCcCCEE----CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHH
Confidence 22233 567777777777777664 34555667777777777777653 23344444443
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=3.5e-14 Score=143.12 Aligned_cols=157 Identities=22% Similarity=0.188 Sum_probs=77.9
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhh-cCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHHHH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLK-SQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAISEI 294 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 294 (541)
.++.|+|++|.|+..... .+. .+++|++|+|++|.|+..... .+..+++|++|+|++|.+... .+..
T Consensus 40 ~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~----~~~~ 107 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSE----AFVPVPNLRYLDLSSNHLHTL----DEFL 107 (361)
T ss_dssp TCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEE----CTTT
T ss_pred CCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChh----hccCCCCCCEEECCCCcCCcC----CHHH
Confidence 456666666666543221 122 445666666666666543211 233445666666666665541 1123
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhc---ccCCCCCEEEcccCCCChhH
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVL---PAFPDLTEVYLSYLNLEDEG 371 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l---~~~~~L~~L~L~~n~l~~~~ 371 (541)
+..+++|+.|+|++|+|... .+..+..+++|+.|+|++|.|+... ...+ ..+++|+.|+|++|.|+...
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~----~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVV----DRNAFEDMAQLQKLYLSQNQISRFP----VELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCCSCC----GGGTC----CTTCCEEECCSSCCCCCC
T ss_pred hCCCcCCCEEECCCCcccEE----CHHHhCCcccCCEEECCCCcCCeeC----HHHhcCcccCCcCCEEECCCCCCCccC
Confidence 45556666666666666532 1233455566666666666655421 1112 34556666666666665433
Q ss_pred HHHHHHHHhhcCCC--ccEEEecCCCCC
Q 009168 372 AEALAGALKECAPS--LEVLDLAGNDIT 397 (541)
Q Consensus 372 ~~~l~~~l~~~~~~--L~~L~L~~n~l~ 397 (541)
...+.. ++. ++.|+|++|.+.
T Consensus 180 ~~~~~~-----l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQK-----LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHH-----SCHHHHTTEECCSSCEE
T ss_pred HHHhhh-----ccHhhcceEEecCCCcc
Confidence 333322 233 355566665554
No 123
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=1.3e-14 Score=134.17 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=50.7
Q ss_pred CCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHH
Q 009168 243 NNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAK 321 (541)
Q Consensus 243 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 321 (541)
++|++|+|++|.++.... ..+..+++|++|++++|.+.. ++ ..+..+++|++|++++|+++.. ...
T Consensus 28 ~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPN----GVFDELTSLTQLYLGGNKLQS-----LPNGVFNKLTSLTYLNLSTNQLQSL----PNG 94 (208)
T ss_dssp TTCSEEECCSSCCCCCCT----TTTTTCTTCSEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCC----CTT
T ss_pred CCCcEEEcCCCccCcCCh----hhhcccccCcEEECCCCccCc-----cChhhcCCCCCcCEEECCCCcCCcc----CHh
Confidence 457777777776654211 123344566666666666553 22 2234445555555555555422 111
Q ss_pred HhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 322 ALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 322 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
.+..+++|++|+|++|.++... ...+..+++|+.|++++|.++
T Consensus 95 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 95 VFDKLTQLKELALNTNQLQSLP----DGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCC----TTTTTTCTTCCEEECCSSCCS
T ss_pred HhcCccCCCEEEcCCCcCcccC----HhHhccCCcCCEEECCCCccc
Confidence 2334445555555555444320 122333444444444444443
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.35 E-value=4.8e-14 Score=131.60 Aligned_cols=135 Identities=18% Similarity=0.210 Sum_probs=76.0
Q ss_pred CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHH
Q 009168 299 PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGA 378 (541)
Q Consensus 299 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 378 (541)
++|+.|++++|+|+.. .+..+..+++|+.|+|++|.++.. .+..+..+++|+.|+|++|.|+......+
T Consensus 32 ~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~----~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f--- 100 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISEL----APDAFQGLRSLNSLVLYGNKITELPKSLF--- 100 (220)
T ss_dssp TTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEE----CTTTTTTCSSCCEEECCSSCCCCCCTTTT---
T ss_pred cCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCc----CHHHhhCCcCCCEEECCCCcCCccCHhHc---
Confidence 3555555555555532 112345556666666666666543 14455566666666666666654222212
Q ss_pred HhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 379 LKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 379 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
..+++|+.|+|++|.|+...+.. +..+++|++|+|++|.|+.... ..+. .+++|++|+|++|.+..
T Consensus 101 --~~l~~L~~L~L~~N~l~~~~~~~----~~~l~~L~~L~L~~N~l~~~~~----~~~~-~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 101 --EGLFSLQLLLLNANKINCLRVDA----FQDLHNLNLLSLYDNKLQTIAK----GTFS-PLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp --TTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCSCCCT----TTTT-TCTTCCEEECCSSCEEC
T ss_pred --cCCCCCCEEECCCCCCCEeCHHH----cCCCCCCCEEECCCCcCCEECH----HHHh-CCCCCCEEEeCCCCcCC
Confidence 12466777777777666544332 3334677777777777764321 1233 57777888888877643
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.34 E-value=1.6e-13 Score=122.30 Aligned_cols=137 Identities=21% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHH
Q 009168 327 THLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAA 406 (541)
Q Consensus 327 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 406 (541)
++|++|++++|.++... ++..+..+++|+.|++++|.++.. ..+ ..+++|+.|++++|.+++..+..
T Consensus 24 ~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~N~l~~~~~~~--- 90 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV--SNL-----PKLPKLKKLELSENRIFGGLDML--- 90 (168)
T ss_dssp TSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC--SSC-----CCCSSCCEEEEESCCCCSCCCHH---
T ss_pred ccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh--hhh-----ccCCCCCEEECcCCcCchHHHHH---
Confidence 45555555555554100 233344555566666666655542 111 12456666666666665532222
Q ss_pred HHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC
Q 009168 407 CIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP 482 (541)
Q Consensus 407 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 482 (541)
+..+++|++|+|++|.+++... ...+. .+++|++|++++|.|+.... .....+..+++|++|++++|.+.
T Consensus 91 -~~~l~~L~~L~Ls~N~l~~~~~---~~~l~-~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 91 -AEKLPNLTHLNLSGNKLKDIST---LEPLK-KLECLKSLDLFNCEVTNLND-YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp -HHHCTTCCEEECBSSSCCSSGG---GGGGS-SCSCCCEEECCSSGGGTSTT-HHHHHHTTCSSCCEETTEETTSC
T ss_pred -HhhCCCCCEEeccCCccCcchh---HHHHh-cCCCCCEEEeeCCcCcchHH-HHHHHHHhCccCcEecCCCCChh
Confidence 2234666666666666664211 02333 56677777777776665321 01134566677777777777654
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.33 E-value=6.4e-14 Score=130.76 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=76.8
Q ss_pred CccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHH
Q 009168 300 ALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGAL 379 (541)
Q Consensus 300 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 379 (541)
.+++|+|++|.++... ....+..+++|++|+|++|.|+... +..+..+++|++|+|++|.++...+..+.
T Consensus 33 ~~~~L~L~~N~l~~~~---~~~~~~~l~~L~~L~L~~N~i~~i~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--- 102 (220)
T 2v70_A 33 YTAELRLNNNEFTVLE---ATGIFKKLPQLRKINFSNNKITDIE----EGAFEGASGVNEILLTSNRLENVQHKMFK--- 102 (220)
T ss_dssp TCSEEECCSSCCCEEC---CCCCGGGCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSSCCCCCCGGGGT---
T ss_pred CCCEEEcCCCcCCccC---chhhhccCCCCCEEECCCCcCCEEC----HHHhCCCCCCCEEECCCCccCccCHhHhc---
Confidence 3455555555554320 0012455666666666666665531 23456666677777777666654333332
Q ss_pred hhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCC
Q 009168 380 KECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMK 454 (541)
Q Consensus 380 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 454 (541)
.+++|++|+|++|.|++..+..+ ..+++|++|+|++|.|+... +..+. .+++|+.|+|++|.+.
T Consensus 103 --~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L~L~~N~l~~~~----~~~~~-~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 103 --GLESLKTLMLRSNRITCVGNDSF----IGLSSVRLLSLYDNQITTVA----PGAFD-TLHSLSTLNLLANPFN 166 (220)
T ss_dssp --TCSSCCEEECTTSCCCCBCTTSS----TTCTTCSEEECTTSCCCCBC----TTTTT-TCTTCCEEECCSCCEE
T ss_pred --CCcCCCEEECCCCcCCeECHhHc----CCCccCCEEECCCCcCCEEC----HHHhc-CCCCCCEEEecCcCCc
Confidence 24667777777777665443332 33467777777777776422 23344 6777888888887765
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=5.6e-13 Score=116.12 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=48.8
Q ss_pred cccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHH
Q 009168 351 LPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAI 430 (541)
Q Consensus 351 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~ 430 (541)
+..+++|+.|++++|.+++. ..+ ..+++|+.|++++|.+++..+.. +..+++|++|+|++|.+++..
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~--~~~-----~~l~~L~~L~Ls~n~i~~~~~~~----~~~l~~L~~L~ls~N~i~~~~-- 104 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI--ANL-----PKLNKLKKLELSDNRVSGGLEVL----AEKCPNLTHLNLSGNKIKDLS-- 104 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC--TTC-----CCCTTCCEEECCSSCCCSCTHHH----HHHCTTCCEEECTTSCCCSHH--
T ss_pred HhhcCCCcEEECcCCCCCCc--hhh-----hcCCCCCEEECCCCcccchHHHH----hhhCCCCCEEECCCCcCCChH--
Confidence 34444455555555544432 111 11345555555555554432222 222355555555555555321
Q ss_pred HHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEec
Q 009168 431 LIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNIN 477 (541)
Q Consensus 431 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~ 477 (541)
.+..+. .+++|++|++++|.++.... .....+..+++|++|+++
T Consensus 105 -~~~~~~-~l~~L~~L~l~~N~l~~~~~-~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 105 -TIEPLK-KLENLKSLDLFNCEVTNLND-YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp -HHGGGG-GCTTCCEEECTTCGGGGSTT-HHHHHHHHCTTCCEETTB
T ss_pred -HHHHHh-hCCCCCEEeCcCCcccchHH-HHHHHHHHCCCcccccCC
Confidence 112233 45555555555555554311 011234455556665554
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=1.6e-13 Score=128.99 Aligned_cols=131 Identities=20% Similarity=0.259 Sum_probs=66.0
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHHH-HH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAIS-EI 294 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~-~~ 294 (541)
+|++|+|++|.++.... ..+..+++|++|+|++|.++.... ..+..+++|++|+|++|.+.. ++ ..
T Consensus 41 ~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~N~l~~i~~----~~~~~l~~L~~L~Ls~N~l~~-----l~~~~ 107 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEP----GVFDSLINLKELYLGSNQLGALPV----GVFDSLTQLTVLDLGTNQLTV-----LPSAV 107 (229)
T ss_dssp TCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCC-----CCTTT
T ss_pred CCCEEEcCCCccCccCH----HHhhCccCCcEEECCCCCCCCcCh----hhcccCCCcCEEECCCCcCCc-----cChhH
Confidence 55666666665554221 223344556666666665543211 112334566666666665553 22 22
Q ss_pred hhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 295 VKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 295 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
+..+++|++|+|++|+++. ++..+..+++|+.|+|++|.|+... ...+..+++|+.|+|++|.+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTE-----LPRGIERLTHLTHLALDQNQLKSIP----HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECCSSCCCS-----CCTTGGGCTTCSEEECCSSCCCCCC----TTTTTTCTTCCEEECTTSCBC
T ss_pred hCcchhhCeEeccCCcccc-----cCcccccCCCCCEEECCCCcCCccC----HHHHhCCCCCCEEEeeCCCcc
Confidence 3445556666666665552 3334455556666666666555421 133445555555555555554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=7.4e-13 Score=115.33 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=67.7
Q ss_pred CCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHH
Q 009168 299 PALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGA 378 (541)
Q Consensus 299 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~ 378 (541)
++|++|++++|.+++.. ++..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+++..+..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~---~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGK---LEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEK- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTB---CCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHH-
T ss_pred ccCeEEEccCCcCChhH---HHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhh-
Confidence 34555555555544110 222344555666666666665542 44555666666666666665533333222
Q ss_pred HhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEcc
Q 009168 379 LKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLS 449 (541)
Q Consensus 379 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls 449 (541)
+++|++|++++|.+++... ...+..+++|++|++++|.+++.... ....+. .+++|+.|+++
T Consensus 87 ----l~~L~~L~ls~N~i~~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~-~~~~~~-~l~~L~~L~l~ 148 (149)
T 2je0_A 87 ----CPNLTHLNLSGNKIKDLST---IEPLKKLENLKSLDLFNCEVTNLNDY-RENVFK-LLPQLTYLDGY 148 (149)
T ss_dssp ----CTTCCEEECTTSCCCSHHH---HGGGGGCTTCCEEECTTCGGGGSTTH-HHHHHH-HCTTCCEETTB
T ss_pred ----CCCCCEEECCCCcCCChHH---HHHHhhCCCCCEEeCcCCcccchHHH-HHHHHH-HCCCcccccCC
Confidence 4666666666666665321 12244456666666666666543220 011223 56666666665
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=6.7e-13 Score=118.16 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=87.6
Q ss_pred CCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHH
Q 009168 298 SPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAG 377 (541)
Q Consensus 298 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~ 377 (541)
.++|++|++++|.+++.. ++..+..+++|+.|++++|.++.. ..+..+++|+.|++++|.++...+..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~---i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGK---IEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTB---CSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCCCChhh---HHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 355666666666665211 333345667777777777777652 55667777888888888777543333322
Q ss_pred HHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCCh
Q 009168 378 ALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKR 455 (541)
Q Consensus 378 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 455 (541)
+++|+.|++++|.+++.... ..+..+++|++|+|++|.++..... ....+. .+++|++|++++|.+..
T Consensus 94 -----l~~L~~L~Ls~N~l~~~~~~---~~l~~l~~L~~L~l~~N~l~~~~~~-~~~~~~-~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 94 -----LPNLTHLNLSGNKLKDISTL---EPLKKLECLKSLDLFNCEVTNLNDY-RESVFK-LLPQLTYLDGYDREDQE 161 (168)
T ss_dssp -----CTTCCEEECBSSSCCSSGGG---GGGSSCSCCCEEECCSSGGGTSTTH-HHHHHT-TCSSCCEETTEETTSCB
T ss_pred -----CCCCCEEeccCCccCcchhH---HHHhcCCCCCEEEeeCCcCcchHHH-HHHHHH-hCccCcEecCCCCChhh
Confidence 57888888888887763210 2244557888888888887753321 012344 78888888888887654
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.4e-13 Score=126.20 Aligned_cols=165 Identities=19% Similarity=0.176 Sum_probs=108.8
Q ss_pred hcCCCccEEEecCCCCChh--HHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 296 KHSPALEDFRCSSTRIGAE--GGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~--~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
...+.++.++++.+.+... .+..++..+..+++|++|+|++|.++. ++ .+..+++|+.|++++|.++. .+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-----l~-~~~~l~~L~~L~l~~n~l~~-l~~ 87 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-----IS-SLSGMENLRILSLGRNLIKK-IEN 87 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-----CC-CHHHHTTCCEEEEEEEEECS-CSS
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-----cc-ccccCCCCCEEECCCCCccc-ccc
Confidence 3344444444444444322 111234467778888888888888776 23 56667888888888888774 222
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
.+.. +++|+.|++++|.+++.. .+..+ ++|++|+|++|.+++.+.. ..+. .+++|++|++++|.+
T Consensus 88 ~~~~-----~~~L~~L~L~~N~l~~l~--~~~~l----~~L~~L~l~~N~i~~~~~~---~~l~-~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 88 LDAV-----ADTLEELWISYNQIASLS--GIEKL----VNLRVLYMSNNKITNWGEI---DKLA-ALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHH-----HHHCSEEEEEEEECCCHH--HHHHH----HHSSEEEESEEECCCHHHH---HHHT-TTTTCSEEEECSCHH
T ss_pred hhhc-----CCcCCEEECcCCcCCcCC--ccccC----CCCCEEECCCCcCCchhHH---HHHh-cCCCCCEEEecCCcc
Confidence 2222 367899999999888632 34444 8899999999998864321 2455 788999999999987
Q ss_pred ChHH------HHHHHHHHhcCCCccEEEecCCCCChh
Q 009168 454 KRAG------ARLLAQVAVNKPGLKMLNINGNFIPDE 484 (541)
Q Consensus 454 ~~~~------~~~l~~~l~~~~~L~~L~L~~N~i~~~ 484 (541)
+... .......+..+++|+.|| +|++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred ccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 6652 122344577889999887 7777664
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=4.4e-13 Score=120.39 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=30.2
Q ss_pred cCCCccEEEecCCCCChhHHHHHHHHhhcC-CCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCCh
Q 009168 297 HSPALEDFRCSSTRIGAEGGIALAKALGQC-THLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLED 369 (541)
Q Consensus 297 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 369 (541)
.+++|++|++++|+++.. + .+..+ ++|+.|++++|.++. + ..+..+++|+.|++++|.++.
T Consensus 17 ~~~~L~~L~l~~n~l~~i-----~-~~~~~~~~L~~L~Ls~N~l~~-----~-~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-----E-NLGATLDQFDAIDFSDNEIRK-----L-DGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-----C-CGGGGTTCCSEEECCSSCCCE-----E-CCCCCCSSCCEEECCSSCCCE
T ss_pred CcCCceEEEeeCCCCchh-----H-HhhhcCCCCCEEECCCCCCCc-----c-cccccCCCCCEEECCCCcccc
Confidence 345566666666655531 1 12222 255555555555554 1 344455555555555555543
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.24 E-value=2.2e-14 Score=143.89 Aligned_cols=105 Identities=12% Similarity=0.026 Sum_probs=48.9
Q ss_pred eEEEeeCCCCCchHHHHHHHHHHHhccCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHH
Q 009168 156 TRICFSNKSFGLGASRVAAPILRLIKDQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAF 235 (541)
Q Consensus 156 ~~L~Ls~~~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l 235 (541)
+.++.++++++. ++..++.++++|+|++|.++..+..++..+ ++|++|+|++|.+.....
T Consensus 12 ~~v~C~~~~Lt~--------iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l---------~~L~~L~Ls~N~i~~~i~--- 71 (350)
T 4ay9_X 12 RVFLCQESKVTE--------IPSDLPRNAIELRFVLTKLRVIQKGAFSGF---------GDLEKIEISQNDVLEVIE--- 71 (350)
T ss_dssp TEEEEESTTCCS--------CCTTCCTTCSEEEEESCCCSEECTTSSTTC---------TTCCEEEEECCTTCCEEC---
T ss_pred CEEEecCCCCCc--------cCcCcCCCCCEEEccCCcCCCcCHHHHcCC---------CCCCEEECcCCCCCCccC---
Confidence 456666666552 222233466666666666665543322222 356666666665532100
Q ss_pred HHHhhcCCCccE-EEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCC
Q 009168 236 GALLKSQNNLEE-LHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTG 284 (541)
Q Consensus 236 ~~~l~~~~~L~~-L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 284 (541)
...+..++++.+ +.+++|++....+ ..+..+++|++|++++|.+.
T Consensus 72 ~~~f~~L~~l~~~l~~~~N~l~~l~~----~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 72 ADVFSNLPKLHEIRIEKANNLLYINP----EAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp TTSBCSCTTCCEEEEEEETTCCEECT----TSBCCCTTCCEEEEEEECCS
T ss_pred hhHhhcchhhhhhhcccCCcccccCc----hhhhhccccccccccccccc
Confidence 011333444443 3444455543211 12334455555555555554
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=1.8e-13 Score=125.47 Aligned_cols=13 Identities=46% Similarity=0.409 Sum_probs=6.1
Q ss_pred CCccEEEccCCCC
Q 009168 412 QFLTKLNLAENEL 424 (541)
Q Consensus 412 ~~L~~L~Ls~n~l 424 (541)
++|++|++++|.+
T Consensus 140 ~~L~~L~l~~N~l 152 (198)
T 1ds9_A 140 DKLEDLLLAGNPL 152 (198)
T ss_dssp TTCSEEEECSCHH
T ss_pred CCCCEEEecCCcc
Confidence 4444444444444
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2e-14 Score=144.16 Aligned_cols=219 Identities=14% Similarity=0.119 Sum_probs=98.4
Q ss_pred CeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccE-EEcCCCCCChHHHHHH-HH
Q 009168 216 QLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKV-LHFHNNMTGDEGAVAI-SE 293 (541)
Q Consensus 216 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~-L~Ls~n~l~~~~~~~l-~~ 293 (541)
++++|+|++|+|+..... .+..+++|++|+|++|.+...... ..+..++++.. +.+++|.+.. + +.
T Consensus 31 ~l~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~i~~~i~~---~~f~~L~~l~~~l~~~~N~l~~-----l~~~ 98 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKG----AFSGFGDLEKIEISQNDVLEVIEA---DVFSNLPKLHEIRIEKANNLLY-----INPE 98 (350)
T ss_dssp TCSEEEEESCCCSEECTT----SSTTCTTCCEEEEECCTTCCEECT---TSBCSCTTCCEEEEEEETTCCE-----ECTT
T ss_pred CCCEEEccCCcCCCcCHH----HHcCCCCCCEEECcCCCCCCccCh---hHhhcchhhhhhhcccCCcccc-----cCch
Confidence 566666666666543211 234446666666666655321000 12233344443 4444555554 2 23
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccC-CCCCchHHHHHHHhcccC-CCCCEEEcccCCCChhH
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRD-NMFGVEAGVALSEVLPAF-PDLTEVYLSYLNLEDEG 371 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~ 371 (541)
.+..+++|++|++++|++.... ...+.....+..|++.+ +.+.... ...+..+ ..++.|+|++|.|+...
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~l~~l~l~~~~~i~~l~----~~~f~~~~~~l~~L~L~~N~i~~i~ 170 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLP----DVHKIHSLQKVLLDIQDNINIHTIE----RNSFVGLSFESVILWLNKNGIQEIH 170 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCC----CCTTCCBSSCEEEEEESCTTCCEEC----TTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred hhhhccccccccccccccccCC----chhhcccchhhhhhhcccccccccc----ccchhhcchhhhhhccccccccCCC
Confidence 4455666666666666654321 01122333455555544 3343311 1222332 24556666666665322
Q ss_pred HHHHHHHHhhcCCCccEEEecC-CCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccC
Q 009168 372 AEALAGALKECAPSLEVLDLAG-NDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLST 450 (541)
Q Consensus 372 ~~~l~~~l~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~ 450 (541)
...+ . ..+|+.|++++ |.++...... +..+++|++|+|++|.|+. ++.. ...+|+.|.+.+
T Consensus 171 ~~~f-~-----~~~L~~l~l~~~n~l~~i~~~~----f~~l~~L~~LdLs~N~l~~-----lp~~---~~~~L~~L~~l~ 232 (350)
T 4ay9_X 171 NSAF-N-----GTQLDELNLSDNNNLEELPNDV----FHGASGPVILDISRTRIHS-----LPSY---GLENLKKLRARS 232 (350)
T ss_dssp TTSS-T-----TEEEEEEECTTCTTCCCCCTTT----TTTEECCSEEECTTSCCCC-----CCSS---SCTTCCEEECTT
T ss_pred hhhc-c-----ccchhHHhhccCCcccCCCHHH----hccCcccchhhcCCCCcCc-----cChh---hhccchHhhhcc
Confidence 2111 1 24566666653 3444322222 2233566666666666652 2211 234455554443
Q ss_pred C-CCChHHHHHHHHHHhcCCCccEEEecC
Q 009168 451 N-SMKRAGARLLAQVAVNKPGLKMLNING 478 (541)
Q Consensus 451 n-~i~~~~~~~l~~~l~~~~~L~~L~L~~ 478 (541)
+ .++. ++ .+..+++|+.+++.+
T Consensus 233 ~~~l~~-----lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 233 TYNLKK-----LP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CTTCCC-----CC-CTTTCCSCCEEECSC
T ss_pred CCCcCc-----CC-CchhCcChhhCcCCC
Confidence 3 2222 22 234555666666653
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.18 E-value=4.2e-12 Score=113.94 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=66.8
Q ss_pred cCCCcCEEEccCCCCCchHHHHHHHhcccC-CCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHH
Q 009168 325 QCTHLKKLDLRDNMFGVEAGVALSEVLPAF-PDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASS 403 (541)
Q Consensus 325 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 403 (541)
.+++|+.|++++|.++. ++ .+..+ ++|+.|++++|.+++. ..+ ..+++|+.|++++|.|+...+..
T Consensus 17 ~~~~L~~L~l~~n~l~~-----i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l-----~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-----IE-NLGATLDQFDAIDFSDNEIRKL--DGF-----PLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CTTSCEEEECTTSCCCS-----CC-CGGGGTTCCSEEECCSSCCCEE--CCC-----CCCSSCCEEECCSSCCCEECSCH
T ss_pred CcCCceEEEeeCCCCch-----hH-HhhhcCCCCCEEECCCCCCCcc--ccc-----ccCCCCCEEECCCCcccccCcch
Confidence 44556666666666553 11 22222 3566666666666542 111 12456666666666665432221
Q ss_pred HHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 404 LAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 404 l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+ ..+++|++|+|++|.|++... ...+. .+++|++|++++|.++..... -...+..+++|+.|++++|.+.+
T Consensus 84 ~----~~l~~L~~L~L~~N~i~~~~~---~~~l~-~l~~L~~L~l~~N~i~~~~~~-~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 84 D----QALPDLTELILTNNSLVELGD---LDPLA-SLKSLTYLCILRNPVTNKKHY-RLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp H----HHCTTCCEEECCSCCCCCGGG---GGGGG-GCTTCCEEECCSSGGGGSTTH-HHHHHHHCTTCSEETTEECCHHH
T ss_pred h----hcCCCCCEEECCCCcCCcchh---hHhhh-cCCCCCEEEecCCCCCCcHhH-HHHHHHHCCccceeCCCcCCHHH
Confidence 1 223566666666666653211 01233 556666666666665542110 11134555666666666665543
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.12 E-value=2.4e-12 Score=117.31 Aligned_cols=139 Identities=20% Similarity=0.244 Sum_probs=77.7
Q ss_pred CEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHH-HHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHH
Q 009168 330 KKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEA-LAGALKECAPSLEVLDLAGNDITAKAASSLAACI 408 (541)
Q Consensus 330 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 408 (541)
+.|++++|.++. ++..+. ++|++|++++|.++...+.. +. .+++|++|+|++|.|++..+.. +
T Consensus 11 ~~l~~s~~~l~~-----ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~----~ 74 (192)
T 1w8a_A 11 TTVDCTGRGLKE-----IPRDIP--LHTTELLLNDNELGRISSDGLFG-----RLPHLVKLELKRNQLTGIEPNA----F 74 (192)
T ss_dssp TEEECTTSCCSS-----CCSCCC--TTCSEEECCSCCCCSBCCSCSGG-----GCTTCCEEECCSSCCCCBCTTT----T
T ss_pred CEEEcCCCCcCc-----CccCCC--CCCCEEECCCCcCCccCCccccc-----cCCCCCEEECCCCCCCCcCHhH----c
Confidence 455555555543 232221 25666666666655432211 21 2466666666666666543333 2
Q ss_pred hhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh-HHH
Q 009168 409 ALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE-GID 487 (541)
Q Consensus 409 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~-g~~ 487 (541)
...++|++|+|++|.|+... +..+. .+++|++|+|++|.|+.. .+..+..+++|++|+|++|+++.. .+.
T Consensus 75 ~~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 75 EGASHIQELQLGENKIKEIS----NKMFL-GLHQLKTLNLYDNQISCV----MPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp TTCTTCCEEECCSCCCCEEC----SSSST-TCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCcccCCEEECCCCcCCccC----HHHhc-CCCCCCEEECCCCcCCee----CHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 33466777777777766422 12233 577777888888777765 445566677788888888877643 234
Q ss_pred HHHHHH
Q 009168 488 EVKEIL 493 (541)
Q Consensus 488 ~l~~~l 493 (541)
.+...+
T Consensus 146 ~~~~~l 151 (192)
T 1w8a_A 146 WFAEWL 151 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.09 E-value=5.4e-12 Score=114.93 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=7.2
Q ss_pred cCCCccEEEccCCCCC
Q 009168 439 GHGQLIEIDLSTNSMK 454 (541)
Q Consensus 439 ~~~~L~~L~Ls~n~i~ 454 (541)
.+++|++|+|++|.+.
T Consensus 124 ~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 124 HLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECTTCCBC
T ss_pred cCCCCCEEEeCCCCcc
Confidence 3444444444444443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=7.9e-12 Score=124.09 Aligned_cols=251 Identities=15% Similarity=0.173 Sum_probs=140.8
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCC--hhHHHHHHHHhhcCCCccEEEecCCCCCHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALG--EKGVRAFGALLKSQNNLEELHLMNDGISEEA 259 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 259 (541)
.+|++|.++++. ....+..+. .. .++|+.|||++|.+. .... ...+.+..+.+..+.|..
T Consensus 25 ~~l~~L~l~g~i----~~~~~~~l~---~~--l~~L~~LdLs~n~i~~~~~~~-------~~~~~~~~~~~~~~~I~~-- 86 (329)
T 3sb4_A 25 NSITHLTLTGKL----NAEDFRHLR---DE--FPSLKVLDISNAEIKMYSGKA-------GTYPNGKFYIYMANFVPA-- 86 (329)
T ss_dssp HHCSEEEEEEEE----CHHHHHHHH---HS--CTTCCEEEEEEEEECCEEESS-------SSSGGGCCEEECTTEECT--
T ss_pred CceeEEEEeccc----cHHHHHHHH---Hh--hccCeEEecCcceeEEecCcc-------ccccccccccccccccCH--
Confidence 468888887642 112222221 11 257888888888776 1100 011223455555555543
Q ss_pred HHHHHHhcCC--------CCCccEEEcCCCCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcC
Q 009168 260 AQAILELIPS--------TEKLKVLHFHNNMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLK 330 (541)
Q Consensus 260 ~~~l~~~l~~--------~~~L~~L~Ls~n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~ 330 (541)
.++.. |++|+.|+|.+ .+.. +. .++..|++|+.|++.+|.+...+. .++..+.++.
T Consensus 87 -----~aF~~~~~~~~~g~~~L~~l~L~~-~i~~-----I~~~aF~~~~~L~~l~l~~n~i~~i~~----~aF~~~~~l~ 151 (329)
T 3sb4_A 87 -----YAFSNVVNGVTKGKQTLEKVILSE-KIKN-----IEDAAFKGCDNLKICQIRKKTAPNLLP----EALADSVTAI 151 (329)
T ss_dssp -----TTTEEEETTEEEECTTCCC-CBCT-TCCE-----ECTTTTTTCTTCCEEEBCCSSCCEECT----TSSCTTTCEE
T ss_pred -----HHhcccccccccccCCCcEEECCc-cccc-----hhHHHhhcCcccceEEcCCCCccccch----hhhcCCCceE
Confidence 22344 68888888887 5544 22 456778888888888887764422 3355666666
Q ss_pred EEEccCCCC-------Cc-------------------hHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCC
Q 009168 331 KLDLRDNMF-------GV-------------------EAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAP 384 (541)
Q Consensus 331 ~L~L~~n~l-------~~-------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 384 (541)
.+.+..+.. .. .-...+...-....++..+.+.++ +.......+. ..|+
T Consensus 152 ~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~----~~~~ 226 (329)
T 3sb4_A 152 FIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIR----DYMP 226 (329)
T ss_dssp EECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHH----HHCT
T ss_pred EecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHH----HhcC
Confidence 665544210 00 000000111111223444444443 3333333332 2368
Q ss_pred CccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCcc-EEEccCCCCChHHHHHHHH
Q 009168 385 SLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLI-EIDLSTNSMKRAGARLLAQ 463 (541)
Q Consensus 385 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~-~L~Ls~n~i~~~~~~~l~~ 463 (541)
+|+.|+|++|.++..+... +..|++|+.|+|.+| +...+. .++. +|++|+ .|++.+ .++.. -..
T Consensus 227 ~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~n-i~~I~~----~aF~-~~~~L~~~l~l~~-~l~~I----~~~ 291 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHN-LKTIGQ----RVFS-NCGRLAGTLELPA-SVTAI----EFG 291 (329)
T ss_dssp TCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTT-CCEECT----TTTT-TCTTCCEEEEECT-TCCEE----CTT
T ss_pred CCeEEECCCCCcceecHhh----hhCCCCCCEEECCcc-cceehH----HHhh-CChhccEEEEEcc-cceEE----chh
Confidence 8999999988887655443 444588999999887 653322 2233 788898 898887 66664 235
Q ss_pred HHhcCCCccEEEecCCCCChhH
Q 009168 464 VAVNKPGLKMLNINGNFIPDEG 485 (541)
Q Consensus 464 ~l~~~~~L~~L~L~~N~i~~~g 485 (541)
+|.+|++|+.|++++|.++.-+
T Consensus 292 aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp TTTTCTTEEEEEECSSCCCEEC
T ss_pred hhhCCccCCEEEeCCCccCccc
Confidence 6778888999999888876543
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=2e-12 Score=128.47 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=127.4
Q ss_pred CCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHhcCCCCCccEEEcCCCCCChHHHHHH-HH
Q 009168 215 SQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQAILELIPSTEKLKVLHFHNNMTGDEGAVAI-SE 293 (541)
Q Consensus 215 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l-~~ 293 (541)
++|+.|+|.+ .++..+. ..+..|++|+.|++++|.+...... .+..+.++..+.+..+.... ....+ ..
T Consensus 101 ~~L~~l~L~~-~i~~I~~----~aF~~~~~L~~l~l~~n~i~~i~~~----aF~~~~~l~~l~~~~~~~~~-~~~~i~~~ 170 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIED----AAFKGCDNLKICQIRKKTAPNLLPE----ALADSVTAIFIPLGSSDAYR-FKNRWEHF 170 (329)
T ss_dssp TTCCC-CBCT-TCCEECT----TTTTTCTTCCEEEBCCSSCCEECTT----SSCTTTCEEEECTTCTHHHH-TSTTTTTS
T ss_pred CCCcEEECCc-cccchhH----HHhhcCcccceEEcCCCCccccchh----hhcCCCceEEecCcchhhhh-cccccccc
Confidence 5777777777 5544322 2345567777777777765543222 22334555555554421000 00000 01
Q ss_pred HhhcCCCcc-EEEecCCCCChhHHHHHHHHh----hcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 294 IVKHSPALE-DFRCSSTRIGAEGGIALAKAL----GQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 294 ~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
.+..+..|+ .+.+..... ++..+ ....++..+.+.++- .......+. ..+++|+.|+|++|.++
T Consensus 171 ~f~~~~~L~~~i~~~~~~~-------l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~---~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGK-------LEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIR---DYMPNLVSLDISKTNAT 239 (329)
T ss_dssp CEEESCCCEEEEEECTTCC-------HHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHH---HHCTTCCEEECTTBCCC
T ss_pred ccccccccceeEEecCCCc-------HHHHHhhcccCccccceEEEeeee-cHHHHHHHH---HhcCCCeEEECCCCCcc
Confidence 233445555 444443322 22211 134566777776653 333322222 34788999999998887
Q ss_pred hhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCcc-EEEccCCCCChhHHHHHHHHhhhcCCCccEEE
Q 009168 369 DEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLT-KLNLAENELQDEGAILIGKSLEEGHGQLIEID 447 (541)
Q Consensus 369 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~-~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~ 447 (541)
......+. .|.+|+.|+|.+| ++..+..+ +..|++|+ .|+|.+ .++..+ ..++. +|++|+.|+
T Consensus 240 ~I~~~aF~-----~~~~L~~l~l~~n-i~~I~~~a----F~~~~~L~~~l~l~~-~l~~I~----~~aF~-~c~~L~~l~ 303 (329)
T 3sb4_A 240 TIPDFTFA-----QKKYLLKIKLPHN-LKTIGQRV----FSNCGRLAGTLELPA-SVTAIE----FGAFM-GCDNLRYVL 303 (329)
T ss_dssp EECTTTTT-----TCTTCCEEECCTT-CCEECTTT----TTTCTTCCEEEEECT-TCCEEC----TTTTT-TCTTEEEEE
T ss_pred eecHhhhh-----CCCCCCEEECCcc-cceehHHH----hhCChhccEEEEEcc-cceEEc----hhhhh-CCccCCEEE
Confidence 65554443 3689999999887 66544433 44558899 999988 555332 23344 899999999
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCccEEEe
Q 009168 448 LSTNSMKRAGARLLAQVAVNKPGLKMLNI 476 (541)
Q Consensus 448 Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L 476 (541)
+++|.++..+ ..+|.+|++|+.|+.
T Consensus 304 l~~n~i~~I~----~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLG----DELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEEC----TTTTCTTCCCCEEEC
T ss_pred eCCCccCccc----hhhhcCCcchhhhcc
Confidence 9999988863 346778899998864
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=1.9e-11 Score=109.70 Aligned_cols=144 Identities=19% Similarity=0.124 Sum_probs=82.2
Q ss_pred cCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHH
Q 009168 329 LKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACI 408 (541)
Q Consensus 329 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 408 (541)
.+.+++++|.++.. +..+ .++|+.|++++|.++......+. .+++|++|++++|.++...+.. +
T Consensus 9 ~~~l~~~~~~l~~~-----p~~~--~~~l~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~----~ 72 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-----PTGI--PSSATRLELESNKLQSLPHGVFD-----KLTQLTKLSLSQNQIQSLPDGV----F 72 (177)
T ss_dssp TTEEECCSSCCSSC-----CTTC--CTTCSEEECCSSCCCCCCTTTTT-----TCTTCSEEECCSSCCCCCCTTT----T
T ss_pred CCEEEecCCCCccC-----CCCC--CCCCcEEEeCCCcccEeCHHHhc-----CcccccEEECCCCcceEeChhH----c
Confidence 34555555555431 2111 24566666666665532222221 2456666666666665433222 2
Q ss_pred hhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCChh--HH
Q 009168 409 ALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPDE--GI 486 (541)
Q Consensus 409 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~--g~ 486 (541)
..+++|++|+|++|.|+... ...+. .+++|++|++++|.|+.. ....+..+++|++|+|++|++... .+
T Consensus 73 ~~l~~L~~L~l~~N~l~~~~----~~~~~-~l~~L~~L~l~~N~l~~~----~~~~~~~l~~L~~L~l~~N~~~~~~~~l 143 (177)
T 2o6r_A 73 DKLTKLTILYLHENKLQSLP----NGVFD-KLTQLKELALDTNQLKSV----PDGIFDRLTSLQKIWLHTNPWDCSCPRI 143 (177)
T ss_dssp TTCTTCCEEECCSSCCCCCC----TTTTT-TCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred cCCCccCEEECCCCCccccC----HHHhh-CCcccCEEECcCCcceEe----CHHHhcCCcccCEEEecCCCeeccCccH
Confidence 34477777777777776321 11233 677888888888888763 223346678888888888887753 35
Q ss_pred HHHHHHHhcCc
Q 009168 487 DEVKEILKHSL 497 (541)
Q Consensus 487 ~~l~~~l~~~~ 497 (541)
..+...+....
T Consensus 144 ~~l~~~~~~~~ 154 (177)
T 2o6r_A 144 DYLSRWLNKNS 154 (177)
T ss_dssp HHHHHHHHHTG
T ss_pred HHHHHHHhhCc
Confidence 66666665543
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.6e-11 Score=111.88 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=7.8
Q ss_pred hhcCCCcCEEEccCCCCC
Q 009168 323 LGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~ 340 (541)
+..+++|+.|+|++|.|+
T Consensus 50 ~~~l~~L~~L~Ls~N~i~ 67 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNRIS 67 (193)
T ss_dssp GGGCTTCCEEECCSSCCC
T ss_pred hhcccCCCEEECCCCcCC
Confidence 334444444444444443
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.04 E-value=1.9e-11 Score=111.41 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=82.9
Q ss_pred CEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHh
Q 009168 330 KKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIA 409 (541)
Q Consensus 330 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 409 (541)
+.+++++|.++. ++..+ .++|++|+|++|.|+.. +..+. .+++|+.|+|++|.|+...+.. +.
T Consensus 13 ~~l~~~~~~l~~-----ip~~~--~~~l~~L~L~~n~i~~i-p~~~~-----~l~~L~~L~Ls~N~i~~i~~~~----f~ 75 (193)
T 2wfh_A 13 TVVRCSNKGLKV-----LPKGI--PRDVTELYLDGNQFTLV-PKELS-----NYKHLTLIDLSNNRISTLSNQS----FS 75 (193)
T ss_dssp TEEECTTSCCSS-----CCSCC--CTTCCEEECCSSCCCSC-CGGGG-----GCTTCCEEECCSSCCCCCCTTT----TT
T ss_pred CEEEcCCCCCCc-----CCCCC--CCCCCEEECCCCcCchh-HHHhh-----cccCCCEEECCCCcCCEeCHhH----cc
Confidence 455666665554 23222 24566666666666532 22221 2466777777777666543332 33
Q ss_pred hCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh-hHHHH
Q 009168 410 LKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD-EGIDE 488 (541)
Q Consensus 410 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~-~g~~~ 488 (541)
..++|++|+|++|.|+... +.++. .+++|++|+|++|.|+.. ....+..+++|+.|+|++|++.. -.+..
T Consensus 76 ~l~~L~~L~Ls~N~l~~i~----~~~f~-~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 76 NMTQLLTLILSYNRLRCIP----PRTFD-GLKSLRLLSLHGNDISVV----PEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp TCTTCCEEECCSSCCCBCC----TTTTT-TCTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCCEEECCCCccCEeC----HHHhC-CCCCCCEEECCCCCCCee----ChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 3477777777777777432 22344 678888888888888764 23346677888888888888753 44555
Q ss_pred HHHHHhc
Q 009168 489 VKEILKH 495 (541)
Q Consensus 489 l~~~l~~ 495 (541)
+...+..
T Consensus 147 l~~~~~~ 153 (193)
T 2wfh_A 147 LSDWVKS 153 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555443
No 144
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.01 E-value=1.6e-10 Score=101.89 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=63.2
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHHHHhhhcCCCccEEEccCC-CCChHHHHHH
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIGKSLEEGHGQLIEIDLSTN-SMKRAGARLL 461 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l 461 (541)
..|+.|++++|.|++.+...+ ..+++|++|+|++| .|+|.|+..|+..-. .+++|++|+|++| .||+.|+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L----~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM----EGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG----TTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHG
T ss_pred ceEeEEeCcCCCccHHHHHHh----cCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHH
Confidence 356666666666666655443 34467777777776 477777666653100 1246777777776 3777765554
Q ss_pred HHHHhcCCCccEEEecCCC-CChhH--HHHHHHHHhcC
Q 009168 462 AQVAVNKPGLKMLNINGNF-IPDEG--IDEVKEILKHS 496 (541)
Q Consensus 462 ~~~l~~~~~L~~L~L~~N~-i~~~g--~~~l~~~l~~~ 496 (541)
..+++|++|+|++|+ |++.| +..+.+.+++.
T Consensus 136 ----~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l 169 (176)
T 3e4g_A 136 ----HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSL 169 (176)
T ss_dssp ----GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTC
T ss_pred ----hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCc
Confidence 346777777777764 66655 45566655543
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.96 E-value=8.6e-11 Score=105.36 Aligned_cols=14 Identities=43% Similarity=0.536 Sum_probs=5.5
Q ss_pred CCCcCEEEccCCCC
Q 009168 326 CTHLKKLDLRDNMF 339 (541)
Q Consensus 326 ~~~L~~L~L~~n~l 339 (541)
+++|++|++++|.+
T Consensus 51 l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 51 LTQLTKLSLSQNQI 64 (177)
T ss_dssp CTTCSEEECCSSCC
T ss_pred cccccEEECCCCcc
Confidence 33344444443333
No 146
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.85 E-value=2.1e-09 Score=94.74 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=56.5
Q ss_pred CCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCC-CCCHHHHHHHHHHHhhCCCccEEEccCC-CCChhHHHHHH
Q 009168 356 DLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGN-DITAKAASSLAACIALKQFLTKLNLAEN-ELQDEGAILIG 433 (541)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~ 433 (541)
.|+.|++++|.|++.+...+. .+++|++|+|++| .|++.+...++..-..+++|++|+|++| .|+|.|+..++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred eEeEEeCcCCCccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 466666666666666665553 2566777777766 3666666555431001245777777776 37777766543
Q ss_pred HHhhhcCCCccEEEccCC-CCChHH
Q 009168 434 KSLEEGHGQLIEIDLSTN-SMKRAG 457 (541)
Q Consensus 434 ~~l~~~~~~L~~L~Ls~n-~i~~~~ 457 (541)
.+++|++|+|++| .|++.|
T Consensus 137 -----~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 137 -----HFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp -----GCTTCCEEEEESCTTCCCHH
T ss_pred -----cCCCCCEEECCCCCCCCchH
Confidence 5677777777776 366655
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.83 E-value=3.7e-10 Score=100.51 Aligned_cols=103 Identities=20% Similarity=0.184 Sum_probs=65.7
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHH-hhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKS-LEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
++|+.|+|++|.|++..+.. +...++|++|+|++|.|+. +... +. .+++|++|+|++|.|+.. ..
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~----~~~l~~L~~L~Ls~N~l~~-----l~~~~f~-~l~~L~~L~L~~N~l~~~----~~ 95 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGV----FDRLTQLTRLDLDNNQLTV-----LPAGVFD-KLTQLTQLSLNDNQLKSI----PR 95 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCSEEECCSSCCCC-----CCTTTTT-TCTTCCEEECCSSCCCCC----CT
T ss_pred CCCcEEEcCCCcCCccChhh----hcCcccCCEEECCCCCcCc-----cChhhcc-CCCCCCEEECCCCccCEe----CH
Confidence 45666666666665543332 2333677777777777763 2222 23 677888888888888764 23
Q ss_pred HHHhcCCCccEEEecCCCCChh--HHHHHHHHHhcCcccc
Q 009168 463 QVAVNKPGLKMLNINGNFIPDE--GIDEVKEILKHSLDVL 500 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~~l 500 (541)
..+..+++|++|+|++|+++.. .+..+...+.......
T Consensus 96 ~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 96 GAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred HHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCccee
Confidence 3466778888888888888754 4677776666654443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.76 E-value=8e-10 Score=98.71 Aligned_cols=103 Identities=20% Similarity=0.185 Sum_probs=65.0
Q ss_pred CCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHH-hhhcCCCccEEEccCCCCChHHHHHHH
Q 009168 384 PSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKS-LEEGHGQLIEIDLSTNSMKRAGARLLA 462 (541)
Q Consensus 384 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~-l~~~~~~L~~L~Ls~n~i~~~~~~~l~ 462 (541)
++|+.|+|++|.|++..+.. +...++|++|+|++|.|+. ++.. +. .+++|++|+|++|.|+.. ..
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~l~~-----i~~~~~~-~l~~L~~L~L~~N~l~~l----~~ 98 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGV----FDHLVNLQQLYFNSNKLTA-----IPTGVFD-KLTQLTQLDLNDNHLKSI----PR 98 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCC-----CCTTTTT-TCTTCCEEECCSSCCCCC----CT
T ss_pred CCCcEEEeCCCCccccCHHH----hcCCcCCCEEECCCCCCCc-----cChhHhC-CcchhhEEECCCCcccee----CH
Confidence 45566666666555433322 2334677777777777763 2222 23 678888888888888763 22
Q ss_pred HHHhcCCCccEEEecCCCCChh--HHHHHHHHHhcCcccc
Q 009168 463 QVAVNKPGLKMLNINGNFIPDE--GIDEVKEILKHSLDVL 500 (541)
Q Consensus 463 ~~l~~~~~L~~L~L~~N~i~~~--g~~~l~~~l~~~~~~l 500 (541)
..+..+++|++|+|++|++... .+..+...+......+
T Consensus 99 ~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~ 138 (174)
T 2r9u_A 99 GAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIV 138 (174)
T ss_dssp TTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred HHhccccCCCEEEeCCCCcccccccHHHHHHHHHhccccc
Confidence 3466778888888888888754 4666776666554444
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.75 E-value=2.2e-09 Score=95.41 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=17.9
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCC
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 368 (541)
+..+++|++|+|++|.|+.. .+..+..+++|+.|+|++|.|+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVL----PAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCC----CTTTTTTCTTCCEEECCSSCCC
T ss_pred hcCcccCCEEECCCCCcCcc----ChhhccCCCCCCEEECCCCccC
Confidence 33444444444444444432 0122334444444444444444
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.64 E-value=5.8e-09 Score=93.06 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=7.9
Q ss_pred hhcCCCcCEEEccCCCCC
Q 009168 323 LGQCTHLKKLDLRDNMFG 340 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~ 340 (541)
+..+++|+.|+|++|.|+
T Consensus 53 ~~~l~~L~~L~Ls~N~l~ 70 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLT 70 (174)
T ss_dssp TTTCTTCCEEECCSSCCC
T ss_pred hcCCcCCCEEECCCCCCC
Confidence 334444444444444443
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.58 E-value=1.2e-09 Score=111.15 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=7.8
Q ss_pred hcccCCCCCEEEcccCC
Q 009168 350 VLPAFPDLTEVYLSYLN 366 (541)
Q Consensus 350 ~l~~~~~L~~L~L~~n~ 366 (541)
+|..|++|+.+.+.+|.
T Consensus 266 aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGST 282 (401)
T ss_dssp TTTTCTTCCEEEEESSC
T ss_pred HhhCCCCCCEEEeCCcc
Confidence 34444444444444443
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=1.2e-09 Score=111.13 Aligned_cols=242 Identities=16% Similarity=0.245 Sum_probs=151.1
Q ss_pred cCccEEEcCCCcCCCchHHHHHHHHHHHhhhcCCCeeEEEcCCCCCChhHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 182 DQLTEVDLSDFIAGRPEEEALEVINMFSSALEGSQLRYLNLSHNALGEKGVRAFGALLKSQNNLEELHLMNDGISEEAAQ 261 (541)
Q Consensus 182 ~~L~~L~Ls~n~~~~~~~~~l~~l~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 261 (541)
..++.+.+.++ +...+ ..++.+++|+.+.|..+ ++..+..+ +.. .+|+.+.|.+ .+...+.
T Consensus 113 ~~l~~i~ip~~-i~~I~----------~~aF~~~~L~~i~l~~~-i~~I~~~a----F~~-~~L~~i~lp~-~l~~I~~- 173 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIP----------KDAFRNSQIAKVVLNEG-LKSIGDMA----FFN-STVQEIVFPS-TLEQLKE- 173 (401)
T ss_dssp SSCSEEECCTT-CCEEC----------TTTTTTCCCSEEECCTT-CCEECTTT----TTT-CCCCEEECCT-TCCEECS-
T ss_pred CCccEEEECCc-cCEeh----------HhhcccCCccEEEeCCC-ccEECHHh----cCC-CCceEEEeCC-CccEehH-
Confidence 45667777653 22222 12333457888888776 44433333 233 3588888876 3332211
Q ss_pred HHHHhcCCCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCc
Q 009168 262 AILELIPSTEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGV 341 (541)
Q Consensus 262 ~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 341 (541)
..+..|++|+.++|++|.+.. ++...-.+.+|+.+.+..+ +...+. .++..|++|+.+++..+ ++.
T Consensus 174 ---~aF~~c~~L~~l~l~~n~l~~-----I~~~aF~~~~L~~l~lp~~-l~~I~~----~aF~~~~~L~~l~l~~~-l~~ 239 (401)
T 4fdw_A 174 ---DIFYYCYNLKKADLSKTKITK-----LPASTFVYAGIEEVLLPVT-LKEIGS----QAFLKTSQLKTIEIPEN-VST 239 (401)
T ss_dssp ---STTTTCTTCCEEECTTSCCSE-----ECTTTTTTCCCSEEECCTT-CCEECT----TTTTTCTTCCCEECCTT-CCE
T ss_pred ---HHhhCcccCCeeecCCCcceE-----echhhEeecccCEEEeCCc-hheehh----hHhhCCCCCCEEecCCC-ccC
Confidence 234567889999998887765 3333333678999998754 543322 34778899999999875 333
Q ss_pred hHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCC-----HHHHHHHHHHHhhCCCccE
Q 009168 342 EAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDIT-----AKAASSLAACIALKQFLTK 416 (541)
Q Consensus 342 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~l~~~~~L~~ 416 (541)
.+ ..+|.. .+|+.+.+. +.++..+...+. .|++|+.+.+.+|.+. ..+. .++..|++|+.
T Consensus 240 I~----~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-----~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~ 304 (401)
T 4fdw_A 240 IG----QEAFRE-SGITTVKLP-NGVTNIASRAFY-----YCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLAR 304 (401)
T ss_dssp EC----TTTTTT-CCCSEEEEE-TTCCEECTTTTT-----TCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCE
T ss_pred cc----cccccc-CCccEEEeC-CCccEEChhHhh-----CCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCe
Confidence 22 334444 689999994 445544344443 3789999999888664 1221 23556789999
Q ss_pred EEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCCh
Q 009168 417 LNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIPD 483 (541)
Q Consensus 417 L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 483 (541)
+.|.+ .++..+. .++. +|++|+.|.|..| ++..+ ..+|.+| +|+.|++++|.+..
T Consensus 305 l~l~~-~i~~I~~----~aF~-~c~~L~~l~lp~~-l~~I~----~~aF~~~-~L~~l~l~~n~~~~ 359 (401)
T 4fdw_A 305 FEIPE-SIRILGQ----GLLG-GNRKVTQLTIPAN-VTQIN----FSAFNNT-GIKEVKVEGTTPPQ 359 (401)
T ss_dssp ECCCT-TCCEECT----TTTT-TCCSCCEEEECTT-CCEEC----TTSSSSS-CCCEEEECCSSCCB
T ss_pred EEeCC-ceEEEhh----hhhc-CCCCccEEEECcc-ccEEc----HHhCCCC-CCCEEEEcCCCCcc
Confidence 99984 4654332 2333 7899999999655 55542 2456777 89999999887544
No 153
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=5.4e-08 Score=96.96 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=66.5
Q ss_pred cEEEecCC-CCChhHHHHHHHHhhcCCCcCEEEccC-CCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHH
Q 009168 302 EDFRCSST-RIGAEGGIALAKALGQCTHLKKLDLRD-NMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGAL 379 (541)
Q Consensus 302 ~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l 379 (541)
..++++++ +++. ++. +..+++|+.|+|++ |.|+.. .+..|..+++|+.|+|++|.|+...+..+.
T Consensus 11 ~~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~~----~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~--- 77 (347)
T 2ifg_A 11 SGLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQHL----ELRDLRGLGELRNLTIVKSGLRFVAPDAFH--- 77 (347)
T ss_dssp SCEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCEE----CGGGSCSCCCCSEEECCSSCCCEECTTGGG---
T ss_pred CEEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCCc----ChhHhccccCCCEEECCCCccceeCHHHhc---
Confidence 35677776 6663 555 77777788888875 777763 135577777888888888877764444333
Q ss_pred hhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCC
Q 009168 380 KECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQ 425 (541)
Q Consensus 380 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 425 (541)
.+++|+.|+|++|.|+...+..+ .. ..|+.|+|++|.+.
T Consensus 78 --~l~~L~~L~l~~N~l~~~~~~~~----~~-~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 78 --FTPRLSRLNLSFNALESLSWKTV----QG-LSLQELVLSGNPLH 116 (347)
T ss_dssp --SCSCCCEEECCSSCCSCCCSTTT----CS-CCCCEEECCSSCCC
T ss_pred --CCcCCCEEeCCCCccceeCHHHc----cc-CCceEEEeeCCCcc
Confidence 25777777777777765432211 11 23777777777765
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.27 E-value=2.1e-07 Score=92.71 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=50.8
Q ss_pred EEEecCC-CCCHHHHHHHHHhcCCCCCccEEEcCC-CCCChHHHHHHH-HHhhcCCCccEEEecCCCCChhHHHHHHHHh
Q 009168 247 ELHLMND-GISEEAAQAILELIPSTEKLKVLHFHN-NMTGDEGAVAIS-EIVKHSPALEDFRCSSTRIGAEGGIALAKAL 323 (541)
Q Consensus 247 ~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~l~~~~~~~l~-~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 323 (541)
.++++++ +++. +.. +..+++|+.|+|++ |.+.. ++ ..+..+++|+.|+|++|+|+.. .+..|
T Consensus 12 ~v~~~~~n~l~~-----ip~-l~~~~~L~~L~l~~~n~l~~-----~~~~~~~~l~~L~~L~l~~N~l~~~----~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-----LHH-LPGAENLTELYIENQQHLQH-----LELRDLRGLGELRNLTIVKSGLRFV----APDAF 76 (347)
T ss_dssp CEECCSSCCCTT-----TTT-SCSCSCCSEEECCSCSSCCE-----ECGGGSCSCCCCSEEECCSSCCCEE----CTTGG
T ss_pred EEEcCCCCCCCc-----cCC-CCCCCCeeEEEccCCCCCCC-----cChhHhccccCCCEEECCCCcccee----CHHHh
Confidence 3455555 5543 122 44445666666664 65554 22 3455556666666666665542 22334
Q ss_pred hcCCCcCEEEccCCCCCchHHHHHHH-hcccCCCCCEEEcccCCCC
Q 009168 324 GQCTHLKKLDLRDNMFGVEAGVALSE-VLPAFPDLTEVYLSYLNLE 368 (541)
Q Consensus 324 ~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~ 368 (541)
..+++|+.|+|++|.|+.. +. .+..++ |+.|+|.+|.+.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~-----~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESL-----SWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp GSCSCCCEEECCSSCCSCC-----CSTTTCSCC-CCEEECCSSCCC
T ss_pred cCCcCCCEEeCCCCcccee-----CHHHcccCC-ceEEEeeCCCcc
Confidence 5555666666666665542 22 222222 555555555554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=2e-06 Score=81.54 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=63.8
Q ss_pred EEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhc
Q 009168 360 VYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEG 439 (541)
Q Consensus 360 L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 439 (541)
++++.|.. .....+......++++|+.|+|++|.|++... +...+..+++|+.|+|++|.|++.. .+ ..+. .
T Consensus 148 l~l~~N~~--~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~--l~~~~~~l~~L~~L~Ls~N~i~~~~--~l-~~l~-~ 219 (267)
T 3rw6_A 148 IDVVLNRR--SCMAATLRIIEENIPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSER--EL-DKIK-G 219 (267)
T ss_dssp CCCCTTSH--HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGG--GTTHHHHSTTCCEEECTTSCCCSGG--GG-GGGT-T
T ss_pred ccccCCHH--HHHHHHHHHHHhhCCCCCEEECCCCCCCCCcc--chhHHhhCCCCCEEECCCCccCCch--hh-hhcc-c
Confidence 44555532 23333334444457888888888888876321 2223344588888888888888541 11 1222 2
Q ss_pred CCCccEEEccCCCCChH---HHHHHHHHHhcCCCccEEE
Q 009168 440 HGQLIEIDLSTNSMKRA---GARLLAQVAVNKPGLKMLN 475 (541)
Q Consensus 440 ~~~L~~L~Ls~n~i~~~---~~~~l~~~l~~~~~L~~L~ 475 (541)
+ +|++|+|++|.+... ...+....+..+|+|+.||
T Consensus 220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred C-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 3 888888888888752 1123445567778888775
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=1.6e-05 Score=75.20 Aligned_cols=68 Identities=22% Similarity=0.310 Sum_probs=34.9
Q ss_pred hcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCCh
Q 009168 296 KHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLED 369 (541)
Q Consensus 296 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 369 (541)
..++.|+.|+|++|+|+... .++..+..+++|+.|+|++|.|+... . ...+..+ +|++|+|++|.+..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~--~l~~~~~~l~~L~~L~Ls~N~i~~~~--~-l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLD--DMSSIVQKAPNLKILNLSGNELKSER--E-LDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCG--GGTTHHHHSTTCCEEECTTSCCCSGG--G-GGGGTTS-CCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCc--cchhHHhhCCCCCEEECCCCccCCch--h-hhhcccC-CcceEEccCCcCcc
Confidence 34566666666666665421 12333445666666666666665421 0 1112222 56666666665543
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.60 E-value=4.3e-05 Score=77.29 Aligned_cols=128 Identities=16% Similarity=0.259 Sum_probs=73.8
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..+..|+.+.+..+...-. ...+..+..++.+.+..+.+... . ...+.+|+.+.+..+ ++..+..
T Consensus 249 f~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~~---~-----F~~~~~L~~i~l~~~-i~~I~~~ 314 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPEK---T-----FYGCSSLTEVKLLDS-VKFIGEE 314 (394)
T ss_dssp TTTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECTT---T-----TTTCTTCCEEEECTT-CCEECTT
T ss_pred ccccccceeEEcCCCcceee-----ccccccccccceeccCceeeccc---c-----ccccccccccccccc-cceechh
Confidence 34555666666655442211 23445556666666555433321 1 123678888888654 4433322
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
++..|.+|+.++|..+ ++..| ..++. +|.+|+.+++..+ ++..| ..+|.+|++|+.+++..+
T Consensus 315 ----aF~~c~~L~~i~lp~~-v~~I~----~~aF~-~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 315 ----AFESCTSLVSIDLPYL-VEEIG----KRSFR-GCTSLSNINFPLS-LRKIG----ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ----TTTTCTTCCEECCCTT-CCEEC----TTTTT-TCTTCCEECCCTT-CCEEC----TTTBTTCTTCCEEEEEGG
T ss_pred ----hhcCCCCCCEEEeCCc-ccEEh----HHhcc-CCCCCCEEEECcc-ccEeh----HHHhhCCCCCCEEEECCC
Confidence 2455688888888654 44322 12334 7888999888766 55542 235678888998888654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.54 E-value=2.6e-05 Score=78.95 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=104.2
Q ss_pred CCCccEEEcCCCC--CChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHH
Q 009168 270 TEKLKVLHFHNNM--TGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVAL 347 (541)
Q Consensus 270 ~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l 347 (541)
+..|+.+.+..+. ++. ..+..+..|+.+.+..+...-. ..++..+..++.+.+..+.+..
T Consensus 229 ~~~l~~i~ip~~~~~i~~-------~~f~~~~~l~~~~~~~~~~~i~-----~~~F~~~~~l~~~~~~~~~i~~------ 290 (394)
T 4fs7_A 229 KTGVKNIIIPDSFTELGK-------SVFYGCTDLESISIQNNKLRIG-----GSLFYNCSGLKKVIYGSVIVPE------ 290 (394)
T ss_dssp TCCCCEEEECTTCCEECS-------STTTTCSSCCEEEECCTTCEEC-----SCTTTTCTTCCEEEECSSEECT------
T ss_pred cCCCceEEECCCceeccc-------ccccccccceeEEcCCCcceee-----ccccccccccceeccCceeecc------
Confidence 3456666654432 221 2445677888888876643311 1236678889998887776553
Q ss_pred HHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChh
Q 009168 348 SEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDE 427 (541)
Q Consensus 348 ~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 427 (541)
.++..+.+|+.+.+..+ +...+..++ ..|.+|+.++|..+ ++..+.. ++..|.+|+.+.|..+ ++..
T Consensus 291 -~~F~~~~~L~~i~l~~~-i~~I~~~aF-----~~c~~L~~i~lp~~-v~~I~~~----aF~~c~~L~~i~lp~~-l~~I 357 (394)
T 4fs7_A 291 -KTFYGCSSLTEVKLLDS-VKFIGEEAF-----ESCTSLVSIDLPYL-VEEIGKR----SFRGCTSLSNINFPLS-LRKI 357 (394)
T ss_dssp -TTTTTCTTCCEEEECTT-CCEECTTTT-----TTCTTCCEECCCTT-CCEECTT----TTTTCTTCCEECCCTT-CCEE
T ss_pred -ccccccccccccccccc-cceechhhh-----cCCCCCCEEEeCCc-ccEEhHH----hccCCCCCCEEEECcc-ccEe
Confidence 45677889999998754 443333333 23789999999754 5544333 3555699999999876 5533
Q ss_pred HHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEE
Q 009168 428 GAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKML 474 (541)
Q Consensus 428 g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L 474 (541)
| ..++. +|++|+.+++..+ +.. +..++.+|++|+.+
T Consensus 358 ~----~~aF~-~C~~L~~i~lp~~-~~~-----~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 358 G----ANAFQ-GCINLKKVELPKR-LEQ-----YRYDFEDTTKFKWI 393 (394)
T ss_dssp C----TTTBT-TCTTCCEEEEEGG-GGG-----GGGGBCTTCEEEEE
T ss_pred h----HHHhh-CCCCCCEEEECCC-CEE-----hhheecCCCCCcEE
Confidence 3 23444 8999999999765 222 33457788888765
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.56 E-value=0.0041 Score=62.56 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=57.6
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..|..|+.+.+..+...-. ..++..++.|+.+.+.. .++..+...+ ..|.+|+.+.|..+ ++..+..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~-----~~aF~~c~~L~~i~l~~-~i~~I~~~aF-----~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIG-----TGAFMNCPALQDIEFSS-RITELPESVF-----AGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTCSSCCEEECCTTCCEEC-----TTTTTTCTTCCEEECCT-TCCEECTTTT-----TTCTTCCEEECCTT-CCEECTT
T ss_pred eeecccccEEecccccceec-----CcccccccccccccCCC-cccccCceee-----cCCCCcCEEEeCCc-ccEehHh
Confidence 45566666666655432211 33455566666666642 2332222222 22566666666543 3322222
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNF 480 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~ 480 (541)
++..|.+|+.+.|..+ ++..| ..++. +|++|+.+++.++.. ....+..+..|+.+.+..|.
T Consensus 329 ----aF~~C~~L~~i~ip~s-v~~I~----~~aF~-~C~~L~~i~~~~~~~-------~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 329 ----AFAGCEQLERIAIPSS-VTKIP----ESAFS-NCTALNNIEYSGSRS-------QWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp ----TTTTCTTCCEEEECTT-CCBCC----GGGGT-TCTTCCEEEESSCHH-------HHHTCBCCCCC---------
T ss_pred ----HhhCCCCCCEEEECcc-cCEEh----HhHhh-CCCCCCEEEECCcee-------ehhhhhccCCCCEEEeCCCC
Confidence 2344466666666543 22211 12233 566666666666521 12344556666666665543
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.03 E-value=0.0069 Score=60.87 Aligned_cols=131 Identities=13% Similarity=0.201 Sum_probs=80.8
Q ss_pred HhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHH
Q 009168 294 IVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAE 373 (541)
Q Consensus 294 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 373 (541)
++..|..|+.+.+..+... .| ..++..|+.|+.+.+..+ +...+ ..+|..|.+|+.+.|..+ ++..+..
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~----~~aF~~c~~L~~i~l~~~-i~~I~----~~aF~~c~~L~~i~lp~~-v~~I~~~ 328 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IG----TGAFMNCPALQDIEFSSR-ITELP----ESVFAGCISLKSIDIPEG-ITQILDD 328 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-EC----TTTTTTCTTCCEEECCTT-CCEEC----TTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred eeeecccccEEecccccce-ec----CcccccccccccccCCCc-ccccC----ceeecCCCCcCEEEeCCc-ccEehHh
Confidence 4567888999988765432 11 134678899999999753 33322 456788999999999764 4433333
Q ss_pred HHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 374 ALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 374 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
++. .|.+|+.+.+..+ ++..+.. ++..|.+|+.+++.++... ..++. .+..|+.+.+..+.+
T Consensus 329 aF~-----~C~~L~~i~ip~s-v~~I~~~----aF~~C~~L~~i~~~~~~~~-------~~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 329 AFA-----GCEQLERIAIPSS-VTKIPES----AFSNCTALNNIEYSGSRSQ-------WNAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTT-----TCTTCCEEEECTT-CCBCCGG----GGTTCTTCCEEEESSCHHH-------HHTCB-CCCCC----------
T ss_pred Hhh-----CCCCCCEEEECcc-cCEEhHh----HhhCCCCCCEEEECCceee-------hhhhh-ccCCCCEEEeCCCCE
Confidence 332 3789999999754 4443333 3566799999999987432 24555 788999998877654
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.56 E-value=0.13 Score=42.45 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=33.1
Q ss_pred CCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCCCCC-hhHHHHHHHHHhcC
Q 009168 441 GQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGNFIP-DEGIDEVKEILKHS 496 (541)
Q Consensus 441 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N~i~-~~g~~~l~~~l~~~ 496 (541)
++|++|+|++|.|+.. -...|..+++|+.|+|++|++. +-.+..+..-+...
T Consensus 31 ~~l~~L~Ls~N~l~~l----~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~ 83 (130)
T 3rfe_A 31 VDTTELVLTGNNLTAL----PPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGR 83 (130)
T ss_dssp TTCSEEECTTSCCSSC----CTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTS
T ss_pred cCCCEEECCCCcCCcc----ChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhC
Confidence 3577777777777664 2334566677888888888765 33455566555544
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.94 E-value=0.031 Score=55.65 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=70.5
Q ss_pred hhcCCCcCEEEccCCCCCchHHHHHHHhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHH
Q 009168 323 LGQCTHLKKLDLRDNMFGVEAGVALSEVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAAS 402 (541)
Q Consensus 323 l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 402 (541)
+..+..|+.+.+..+. ...+ ..++..+..|+.+.+..+ ++..+...+ ..+.+|+.+.+..+ +...+..
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~----~~~f~~~~~L~~i~lp~~-v~~I~~~aF-----~~~~~l~~i~l~~~-i~~i~~~ 280 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLG----DGAFYGMKALDEIAIPKN-VTSIGSFLL-----QNCTALKTLNFYAK-VKTVPYL 280 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEEC----TTTTTTCSSCCEEEECTT-CCEECTTTT-----TTCTTCCEEEECCC-CSEECTT
T ss_pred cccccccceeeeccce-eEEc----cccccCCccceEEEcCCC-ccEeCcccc-----ceeehhcccccccc-ceecccc
Confidence 3455666666665442 1111 334556677777777554 332222222 22567777777543 3322221
Q ss_pred HHHHHHhhCCCccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCCChHHHHHHHHHHhcCCCccEEEecCC
Q 009168 403 SLAACIALKQFLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSMKRAGARLLAQVAVNKPGLKMLNINGN 479 (541)
Q Consensus 403 ~l~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~L~~N 479 (541)
++..|.+|+.+.+.++.++..|. .++. +|.+|+.+.|..+ ++..| ..+|.+|.+|+.+.+..+
T Consensus 281 ----aF~~c~~L~~i~l~~~~i~~I~~----~aF~-~c~~L~~i~lp~~-l~~I~----~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 281 ----LCSGCSNLTKVVMDNSAIETLEP----RVFM-DCVKLSSVTLPTA-LKTIQ----VYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ----TTTTCTTCCEEEECCTTCCEECT----TTTT-TCTTCCEEECCTT-CCEEC----TTTTTTCTTCCCCCCCTT
T ss_pred ----ccccccccccccccccccceehh----hhhc-CCCCCCEEEcCcc-ccEEH----HHHhhCCCCCCEEEECCc
Confidence 24445777877777766653221 2233 6777888877644 44432 134567777777777544
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.37 E-value=0.074 Score=52.81 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=93.5
Q ss_pred CCCCccEEEcCCCCCChHHHHHHHHHhhcCCCccEEEecCCCCChhHHHHHHHHhhcCCCcCEEEccCCCCCchHHHHHH
Q 009168 269 STEKLKVLHFHNNMTGDEGAVAISEIVKHSPALEDFRCSSTRIGAEGGIALAKALGQCTHLKKLDLRDNMFGVEAGVALS 348 (541)
Q Consensus 269 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~ 348 (541)
.+..+..+.+....... ....+..+..|+.+.+..+ +...+ ..++..+..|+.+.+..+ ++..+ .
T Consensus 192 ~~~~~~~~~~~~~~~~i-----~~~~f~~~~~l~~i~~~~~-~~~i~----~~~f~~~~~L~~i~lp~~-v~~I~----~ 256 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTV-----TAYGFSYGKNLKKITITSG-VTTLG----DGAFYGMKALDEIAIPKN-VTSIG----S 256 (379)
T ss_dssp TTCCCSEEECCTTCCEE-----CTTTTTTCSSCSEEECCTT-CCEEC----TTTTTTCSSCCEEEECTT-CCEEC----T
T ss_pred ccccccccccccceeEE-----eecccccccccceeeeccc-eeEEc----cccccCCccceEEEcCCC-ccEeC----c
Confidence 34556666655432211 1134455677888887654 22221 123567888999888775 33322 3
Q ss_pred HhcccCCCCCEEEcccCCCChhHHHHHHHHHhhcCCCccEEEecCCCCCHHHHHHHHHHHhhCCCccEEEccCCCCChhH
Q 009168 349 EVLPAFPDLTEVYLSYLNLEDEGAEALAGALKECAPSLEVLDLAGNDITAKAASSLAACIALKQFLTKLNLAENELQDEG 428 (541)
Q Consensus 349 ~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~g 428 (541)
.++..+.+|+.+.+..+ +...+...+ ..|.+|+.+.+.++.++..+..+ +..|.+|+.+.|..+ ++..|
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF-----~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLC-----SGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTT-----TTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTT-CCEEC
T ss_pred cccceeehhcccccccc-ceecccccc-----ccccccccccccccccceehhhh----hcCCCCCCEEEcCcc-ccEEH
Confidence 45677888888888654 333222222 23688999999888776544333 455688999999754 44322
Q ss_pred HHHHHHHhhhcCCCccEEEccCCCCChH
Q 009168 429 AILIGKSLEEGHGQLIEIDLSTNSMKRA 456 (541)
Q Consensus 429 ~~~l~~~l~~~~~~L~~L~Ls~n~i~~~ 456 (541)
..++. +|++|+.+.+..+ ++..
T Consensus 326 ----~~aF~-~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 326 ----VYAFK-NCKALSTISYPKS-ITLI 347 (379)
T ss_dssp ----TTTTT-TCTTCCCCCCCTT-CCEE
T ss_pred ----HHHhh-CCCCCCEEEECCc-cCEE
Confidence 22344 7899999988654 5543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.80 E-value=0.19 Score=41.46 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=16.6
Q ss_pred CccEEEccCCCCChhHHHHHHHHhhhcCCCccEEEccCCCC
Q 009168 413 FLTKLNLAENELQDEGAILIGKSLEEGHGQLIEIDLSTNSM 453 (541)
Q Consensus 413 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i 453 (541)
+|++|+|++|.|+. |.......+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~-----l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTA-----LPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSS-----CCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCc-----cChhhhhhccccCEEEecCCCe
Confidence 45555555555542 2222111455555555555544
No 165
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.07 E-value=24 Score=32.89 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=9.7
Q ss_pred CChhHHHHHHHHH
Q 009168 481 IPDEGIDEVKEIL 493 (541)
Q Consensus 481 i~~~g~~~l~~~l 493 (541)
++...++.|.+.+
T Consensus 247 iT~~Al~~Lee~l 259 (293)
T 3bbo_G 247 FTEGTIQYLNQRY 259 (293)
T ss_dssp CCTTHHHHHHHHS
T ss_pred EEHHHHHHHHHHh
Confidence 6778888887665
No 166
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.40 E-value=12 Score=23.26 Aligned_cols=11 Identities=18% Similarity=0.296 Sum_probs=5.7
Q ss_pred chhhHHHHhhh
Q 009168 524 IRNDLDSKLKE 534 (541)
Q Consensus 524 ~e~~~e~~~~~ 534 (541)
+-.++-++|.-
T Consensus 27 di~~MqsRLaA 37 (40)
T 2xze_Q 27 ALEAMQSRLAT 37 (40)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34556666553
No 167
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=20.78 E-value=50 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=30.4
Q ss_pred eEEecCCC---------hhhHHHHHHHHHhccCcchhhhhhccCCCHHHHHHH
Q 009168 14 SVKLWPPS---------QSTRLMLVQRMTKNLTTPSIFSRKYGLLSKEEAEED 57 (541)
Q Consensus 14 ~~~~w~~~---------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ea~~~ 57 (541)
.=+.|.|. .+.|..++++.++..-..++- +|.|+++||..-
T Consensus 50 ~G~mWCPgWT~i~Ges~TrSrsgvv~~a~rDFV~KA~~---~gLiT~edA~~w 99 (102)
T 2job_A 50 KGRMWCPGWTAIRGEASTRSQSGVAGKTAKDFVRKAFQ---KGLISQQEANQW 99 (102)
T ss_dssp EEEEECBTTBSCEEEEEESCHHHHHHHHHHHHHHHHHH---HTCSCHHHHHHH
T ss_pred EEEEecCCccceecccccccccchhhhHHHHHHHHHHH---cCCccHHHHHHH
Confidence 34678775 456889999988877666644 689999998654
Done!