Query 009169
Match_columns 541
No_of_seqs 175 out of 204
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 21:15:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2295 C2H2 Zn-finger protein 100.0 1E-73 2.2E-78 604.9 16.5 428 11-535 200-648 (648)
2 PF04959 ARS2: Arsenite-resist 100.0 2.5E-38 5.5E-43 309.4 7.1 129 231-369 2-136 (214)
3 PF12066 DUF3546: Domain of un 99.9 1.7E-26 3.7E-31 205.3 9.5 85 2-86 1-85 (110)
4 KOG2295 C2H2 Zn-finger protein 98.7 6.3E-09 1.4E-13 113.0 2.6 85 2-86 49-133 (648)
5 PF13821 DUF4187: Domain of un 98.1 1.1E-06 2.5E-11 69.8 2.1 33 201-233 8-40 (55)
6 PF13894 zf-C2H2_4: C2H2-type 90.7 0.19 4E-06 31.7 1.9 24 306-331 1-24 (24)
7 PF00096 zf-C2H2: Zinc finger, 90.6 0.13 2.9E-06 32.9 1.1 23 306-331 1-23 (23)
8 KOG1924 RhoA GTPase effector D 89.7 0.74 1.6E-05 53.6 6.8 10 288-297 426-435 (1102)
9 smart00451 ZnF_U1 U1-like zinc 86.3 0.55 1.2E-05 32.8 2.1 30 305-336 3-33 (35)
10 PF12171 zf-C2H2_jaz: Zinc-fin 82.9 0.5 1.1E-05 31.8 0.6 24 305-330 1-24 (27)
11 KOG1994 Predicted RNA binding 82.7 1.3 2.8E-05 45.0 3.6 84 141-232 167-251 (268)
12 KOG0717 Molecular chaperone (D 82.5 0.99 2.1E-05 49.9 2.9 44 301-346 288-332 (508)
13 PF12756 zf-C2H2_2: C2H2 type 80.6 0.79 1.7E-05 38.3 1.1 31 305-337 50-81 (100)
14 PF12874 zf-met: Zinc-finger o 79.2 1.3 2.9E-05 28.8 1.6 23 306-330 1-23 (25)
15 KOG1924 RhoA GTPase effector D 78.8 4.7 0.0001 47.4 6.7 15 149-163 205-219 (1102)
16 smart00355 ZnF_C2H2 zinc finge 75.8 2.2 4.8E-05 26.7 1.9 24 306-332 1-24 (26)
17 PHA00616 hypothetical protein 74.8 1.3 2.8E-05 34.1 0.7 26 306-333 2-27 (44)
18 PF04780 DUF629: Protein of un 67.6 4.9 0.00011 44.8 3.4 42 290-337 45-87 (466)
19 PF13912 zf-C2H2_6: C2H2-type 67.5 3.8 8.1E-05 27.1 1.6 25 306-332 2-26 (27)
20 PF04959 ARS2: Arsenite-resist 53.9 3.5 7.5E-05 41.6 -0.7 42 286-328 62-103 (214)
21 PF02892 zf-BED: BED zinc fing 53.6 9.4 0.0002 28.3 1.8 27 304-332 15-45 (45)
22 COG5192 BMS1 GTP-binding prote 51.9 16 0.00035 42.0 4.0 71 10-87 506-589 (1077)
23 KOG2893 Zn finger protein [Gen 49.1 41 0.0009 34.8 6.0 33 305-340 34-67 (341)
24 smart00805 AGTRAP Angiotensin 47.1 18 0.00039 34.9 3.0 13 521-533 133-145 (159)
25 PF13465 zf-H2C2_2: Zinc-finge 45.3 12 0.00027 25.0 1.2 24 290-318 2-25 (26)
26 KOG3993 Transcription factor ( 43.1 8.8 0.00019 42.3 0.3 27 305-333 356-382 (500)
27 PF05605 zf-Di19: Drought indu 42.6 19 0.00041 28.1 2.0 26 305-333 2-27 (54)
28 PF13913 zf-C2HC_2: zinc-finge 41.8 20 0.00043 24.1 1.7 21 306-329 3-23 (25)
29 KOG4702 Uncharacterized conser 36.9 65 0.0014 27.5 4.4 34 3-36 31-64 (77)
30 PF13909 zf-H2C2_5: C2H2-type 34.8 22 0.00048 22.9 1.1 24 306-332 1-24 (24)
31 PHA00733 hypothetical protein 33.9 29 0.00063 32.1 2.2 26 305-332 99-124 (128)
32 KOG4173 Alpha-SNAP protein [In 31.6 25 0.00053 35.7 1.3 49 282-331 122-170 (253)
33 KOG0132 RNA polymerase II C-te 31.0 40 0.00086 40.0 3.0 55 436-504 703-757 (894)
34 PF04423 Rad50_zn_hook: Rad50 29.9 73 0.0016 24.8 3.5 45 288-340 7-51 (54)
35 KOG4849 mRNA cleavage factor I 28.7 1.8E+02 0.0039 31.9 7.2 9 311-319 157-165 (498)
36 PHA02768 hypothetical protein; 26.3 44 0.00095 27.0 1.7 22 306-329 6-27 (55)
37 PF05605 zf-Di19: Drought indu 26.3 74 0.0016 24.7 3.0 24 305-332 31-54 (54)
38 KOG1925 Rac1 GTPase effector F 23.8 67 0.0015 36.6 3.1 33 444-476 233-266 (817)
39 KOG2482 Predicted C2H2-type Zn 22.8 19 0.00041 38.9 -1.2 69 292-367 184-252 (423)
No 1
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1e-73 Score=604.91 Aligned_cols=428 Identities=33% Similarity=0.395 Sum_probs=352.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhcCCcchHHHHH-------------HHHHHHHHHHHHHHH
Q 009169 11 EDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIE-------------RRNDLARKVAKDFLL 77 (541)
Q Consensus 11 ~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFrEKY~P~~l~~~~e-------------~R~e~~~~~a~~F~~ 77 (541)
+|++.+..+++.|++| .+|. +|.++||..||...||..+|+|.++.+.++ +++-.+...+..|+-
T Consensus 200 ddd~d~s~~ee~e~e~-se~~-tqksa~~n~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lw 277 (648)
T KOG2295|consen 200 DDDTDDSILEENEPEL-SEWG-TQKSANDNTHKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLW 277 (648)
T ss_pred ccccCcccccccchhh-hhhh-hhhhhhhhhhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhh
Confidence 8999999999999999 8887 899999999999999999999999988887 455677778888888
Q ss_pred HhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCcccccc-cCCCCCCCCCChhhHHHhHHHHHHH
Q 009169 78 DLQSGTLDLGPSVNASSSNKLGQTSEPNSDDDVDNGGKRRRHGRGPAKETDLLS-AAPKAHPISSEPRRIQVDIEQAQAL 156 (541)
Q Consensus 78 dLesG~lD~~p~~~~~~~~~~G~~sd~n~~~e~d~~~K~~R~gw~~~ke~d~~s-~aPka~pi~S~p~RI~~Dl~qa~~L 156 (541)
.+.++++++.+...+- +..+-++.++++.++..++++-|++-+-.+...+++ +|+|++.+.+.+-||..+-.||..|
T Consensus 278 v~fk~~~ni~~a~~aL--n~irl~s~~~se~en~~i~rrvr~~~Gia~~keiasn~a~k~~~lldk~irl~~~a~~t~al 355 (648)
T KOG2295|consen 278 VTFKRGTNIKEACWAL--NGIRLRSNFLSESENPDITRRVRPINGIAKHKEIASNAAQKLKNLLDKLIRLIDRASQTQAL 355 (648)
T ss_pred HhhccccchHHHHHHh--hhccccccccccccccCccceeccCCchhhHHHHHHHHHHhhhHHHhhhHHHhhcccccccc
Confidence 9999999987554444 344556677777777777777788876666666655 6999999999999999999999999
Q ss_pred HHHHhhhhcccccccCCCCccccccccc-CCCCCCceeecccccccCcchhhHHHHHHHHHHHHhhcccccccccc----
Q 009169 157 VRKLDSEKGITENILCGSDNDKMNREKS-HGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRIHGVDYYGMVETS---- 231 (541)
Q Consensus 157 i~kLDaE~gi~~n~L~~~d~~~~~~e~s-~~~~gp~~~~rg~~~~~~~e~~~~LD~lI~YLRrVHs~dYY~~~E~~---- 231 (541)
+++|+++.-|..|++....+.++..++. -++.||.++++|++.++++..+++||+||+|||+||++|||+.+||+
T Consensus 356 ~tkl~s~n~i~kni~d~l~te~S~eE~e~~gssg~e~p~eg~~~er~d~~lk~LDll~~YLr~VhslDfyn~~ey~~e~~ 435 (648)
T KOG2295|consen 356 VTKLSSPNPIAKNIEDRLKTEASMEEDELLGSSGPEVPIEGLTSERDDIRLKLLDLLAEYLRIVHSLDFYNSKEYESEDA 435 (648)
T ss_pred hhhccCCCHHHHHHHHHhhhhcchhhhhhcCCCCCcCccccCccccchhHHHHHHHHHHHHHHHHhcccccccccchhhh
Confidence 9999999999888876665555555554 45788999999999999999999999999999999999999999986
Q ss_pred --cccccccccCCCCCCcCCCchhHHHHHhHHHHHHHhhccChhhHhhhhchhHHHHHHhhhhHHHhhhhcccCcccccC
Q 009169 232 --EAKGLRHVRAEGKSSDITNNGAEWEKKLDFRWQERLRSQDPLEIMTAKDKIDAAAVDALDPFVRKIRDEKYGWKYGCG 309 (541)
Q Consensus 232 --er~g~~H~R~~~~~~~~~~~~~~w~kk~d~~~~~~l~~~dp~~~~~~kekid~~~~e~le~~V~k~~dE~~g~K~~C~ 309 (541)
++||++|+|+++..+ ..+..+|+++|++.|+.+|...++++.+-.+.+.++..+++|++||.+|++|+++|||+|+
T Consensus 436 mpnrcgl~hvR~~~~vs--~~ev~e~es~f~s~le~~l~~~~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~ 513 (648)
T KOG2295|consen 436 MPNRCGLIHVRGKGFVS--SKEVGEEESIFLSDLENNLACLLELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCP 513 (648)
T ss_pred cccccCceeecccCCCC--cccchhHHHHHHHHhhhcccccccchHHHHHHhcccCHHHHHHHHHHHHHHHhhcccccCC
Confidence 489999999995433 2357889999999999999988888888888888888999999999999999999999999
Q ss_pred CCCccccccchhHHHHHHhhhChHHHHHHHhhHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCccccccCCCCCccccccC
Q 009169 310 AKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMPKDRPLRRKLGPDNRLKDERG 389 (541)
Q Consensus 310 ~~~CtKlFKg~eFV~KHI~nKH~E~v~~~~~kv~E~~yfnNYl~DP~rP~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~ 389 (541)
|+||+|||||||||+|||++||.|||+++++ |++||||||+||+||..+++ ++++|++..++. |+++|
T Consensus 514 lsgc~KlF~gpEFvrKHi~~KH~d~leeirk---ea~ffnnYl~Dp~rp~~pe~-~~q~prd~qIl~--------r~~~g 581 (648)
T KOG2295|consen 514 LSGCAKLFKGPEFVRKHINKKHKDKLEEIRK---EAIFFNNYLLDPCRPMDPEV-VSQSPRDLQILN--------RGPYG 581 (648)
T ss_pred CcchHhhccCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccCccccCCCcc-ccCCCCcccccc--------CCCCC
Confidence 9999999999999999999999999999995 89999999999999988888 666676555432 56777
Q ss_pred CccccccccCCCCCCCcccCCCCCCCCCCCCCCCCCCCCchhhcccCCCCccCCCCCCCCCCCCCccccCCCCCCCCCCC
Q 009169 390 NRRDRDYRANGSDRYDRSDNAQASDFPSNDDVPEGANRDESMFDTFGGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFV 469 (541)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~p~lmpvpgagp~gpfv 469 (541)
++|+. -|- .+.+++|...-+|.|||.| |+|.|||-
T Consensus 582 G~r~~----------~r~-------------~~dg~~p~~~g~d~fgg~G----------------------a~~sg~~p 616 (648)
T KOG2295|consen 582 GFRNY----------NRN-------------YTDGTTPYGRGRDEFGGSG----------------------ASPSGPQP 616 (648)
T ss_pred CccCC----------CCC-------------CCCCCCCCCCCCCcccCCC----------------------CCCCCCCC
Confidence 66652 111 1223345555567889875 23566553
Q ss_pred CCChHHHHHHhHhcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCccccCCCCCCCccc
Q 009169 470 PAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGPGPILLSPAFRQDPRRIRSYQDLDAPEDEVTV 535 (541)
Q Consensus 470 papp~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~p~~~~dpr~~r~y~dldap~~~~~~ 535 (541)
||.++|+. +...|.| +|+||||||||+++|++
T Consensus 617 -----------------pf~gqg~~------------f~~~p~~-----R~vsYqDLDAPddev~~ 648 (648)
T KOG2295|consen 617 -----------------PFSGQGGM------------FHRRPRY-----RLVSYQDLDAPDDEVPE 648 (648)
T ss_pred -----------------CcccCCCC------------cCCCccc-----ccccccccCCccccCCC
Confidence 35554422 2244443 38999999999999986
No 2
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=100.00 E-value=2.5e-38 Score=309.38 Aligned_cols=129 Identities=33% Similarity=0.553 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCCcCCC-chhHHHHHhHHHHHHHhhccCh-----hhHhhhhchhHHHHHHhhhhHHHhhhhcccCc
Q 009169 231 SEAKGLRHVRAEGKSSDITN-NGAEWEKKLDFRWQERLRSQDP-----LEIMTAKDKIDAAAVDALDPFVRKIRDEKYGW 304 (541)
Q Consensus 231 ~er~g~~H~R~~~~~~~~~~-~~~~w~kk~d~~~~~~l~~~dp-----~~~~~~kekid~~~~e~le~~V~k~~dE~~g~ 304 (541)
.+||||+|||++.+++.++. ++.+|+|+|+++|+.+|+..+. +.+++++ . ++++|++||.++++|++++
T Consensus 2 p~rcGi~HvRg~~p~~~~~~~e~~~w~k~~e~kl~~~L~~~~~l~~~~~~klG~k-~----~e~eve~~v~~~~~e~~~~ 76 (214)
T PF04959_consen 2 PNRCGIIHVRGPPPSNRVTSDEVSEWVKTFEEKLQQLLEPRETLSEEELKKLGGK-D----PEEEVEKFVQKNTKEEDED 76 (214)
T ss_dssp ------------------------HHHHHHHHHHHHHHHS--HHHHHH-HHHHHH-H----HHHHHGGGEEEEE-SSSSE
T ss_pred cccccccccccccccCccCHHHHHHHHHHHHHHHHHHcCCcCcCChHHHHHHccC-c----HHHHHHHHHHHHHHHHcCC
Confidence 46999999999988766544 7889999999999999987553 3333333 3 4556677777777777779
Q ss_pred ccccCCCCccccccchhHHHHHHhhhChHHHHHHHhhHHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQPMP 369 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nKH~E~v~~~~~kv~E~~yfnNYl~DP~rP~~~p~~~~~~~ 369 (541)
||+|++ |+|||||+|||+|||+|||+|+|+++++ |+.||||||+||+||+.+.+++++.+
T Consensus 77 K~~C~l--c~KlFkg~eFV~KHI~nKH~e~ve~~~~---ev~~fnnY~~Dp~rp~~~~~~~~~~p 136 (214)
T PF04959_consen 77 KWRCPL--CGKLFKGPEFVRKHIFNKHPEKVEEVKK---EVEYFNNYLLDPKRPQPPEANPNQHP 136 (214)
T ss_dssp EEEE-S--SS-EESSHHHHHHHHHHH-HHHHHHHHH---HHHHHHHH------------------
T ss_pred EECCCC--CCcccCChHHHHHHHhhcCHHHHHHHHH---HHHHHHHHhcCcccCCCCcccccCcc
Confidence 999986 9999999999999999999999999986 67899999999999987766655444
No 3
>PF12066 DUF3546: Domain of unknown function (DUF3546); InterPro: IPR021933 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 93 to 114 amino acids in length. This domain has two completely conserved Y residues that may be functionally important. ; PDB: 3AX1_A.
Probab=99.93 E-value=1.7e-26 Score=205.33 Aligned_cols=85 Identities=46% Similarity=0.868 Sum_probs=76.7
Q ss_pred CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 009169 2 SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQS 81 (541)
Q Consensus 2 sfKqF~~~~~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFrEKY~P~~l~~~~e~R~e~~~~~a~~F~~dLes 81 (541)
|||||++.++|+|+|++|+++|++||.+|+++|+++||++||+++||||||||+.+.+++++|++.+++++++|+++|++
T Consensus 1 tfK~F~~~~~D~i~~~ea~~~Y~eYK~e~~~~q~~~FF~~HK~eeWFreKY~P~~~~~~~~~~~~~~~~~~~~F~~~l~~ 80 (110)
T PF12066_consen 1 TFKQFLEQQDDDITPEEAQKRYDEYKEEFQRKQLRAFFEQHKDEEWFREKYHPEELDKRREERKEFRKGRADVFMEDLES 80 (110)
T ss_dssp -HHHHGGGTTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhcCcHhhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 009169 82 GTLDL 86 (541)
Q Consensus 82 G~lD~ 86 (541)
|+||.
T Consensus 81 G~~d~ 85 (110)
T PF12066_consen 81 GKFDE 85 (110)
T ss_dssp T----
T ss_pred CCCcc
Confidence 99994
No 4
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=98.70 E-value=6.3e-09 Score=112.99 Aligned_cols=85 Identities=29% Similarity=0.551 Sum_probs=74.7
Q ss_pred CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 009169 2 SYKQFIQELEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLKDKYHPTNLVAVIERRNDLARKVAKDFLLDLQS 81 (541)
Q Consensus 2 sfKqF~~~~~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFrEKY~P~~l~~~~e~R~e~~~~~a~~F~~dLes 81 (541)
|||.|+.+++|+|....|.++|++||.++..+|...||..||+|+|||.||||....+.+..-....++.-..|....++
T Consensus 49 t~kkr~~~~dddi~e~~p~krynd~k~dp~~qq~~~~f~a~k~eewyr~k~h~d~~~k~r~~~~g~yqn~~q~f~~r~e~ 128 (648)
T KOG2295|consen 49 TFKKRLNSYDDDIRESGPYKRYNDYKIDPRTQQNAVFFEAHKDEEWYRKKYHPDATEKLRNSLHGTYQNRLQVFYARTER 128 (648)
T ss_pred hHHHhhcccccccccCCCcccccccCCCCchhhhHHHHHhcCCcchhhhccCCChHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 79999999999999999999999999999999999999999999999999999886554444445555566788888888
Q ss_pred CCCCC
Q 009169 82 GTLDL 86 (541)
Q Consensus 82 G~lD~ 86 (541)
|.|+.
T Consensus 129 ~~~~~ 133 (648)
T KOG2295|consen 129 GFFES 133 (648)
T ss_pred ccccc
Confidence 88875
No 5
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=98.13 E-value=1.1e-06 Score=69.77 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.3
Q ss_pred cCcchhhHHHHHHHHHHHHhhcccccccccccc
Q 009169 201 KGLEGVELLDTLITYLWRIHGVDYYGMVETSEA 233 (541)
Q Consensus 201 ~~~e~~~~LD~lI~YLRrVHs~dYY~~~E~~er 233 (541)
..+...++|+++|.|||.+|++||||++.|++.
T Consensus 8 ~~l~~~e~L~~l~~YLR~~~~YC~~Cg~~Y~d~ 40 (55)
T PF13821_consen 8 EELSPEERLDKLLSYLREEHNYCFWCGTKYDDE 40 (55)
T ss_pred hccCHHHHHHHHHHHHHhhCceeeeeCCccCCH
Confidence 334457899999999999999999999999753
No 6
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=90.66 E-value=0.19 Score=31.65 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=20.1
Q ss_pred cccCCCCccccccchhHHHHHHhhhC
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKH 331 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH 331 (541)
|.|.+ |++.|....=+++|+.+.|
T Consensus 1 ~~C~~--C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPI--CGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SS--TS-EESSHHHHHHHHHHHS
T ss_pred CCCcC--CCCcCCcHHHHHHHHHhhC
Confidence 67986 9999999999999999877
No 7
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=90.56 E-value=0.13 Score=32.91 Aligned_cols=23 Identities=30% Similarity=0.704 Sum_probs=20.6
Q ss_pred cccCCCCccccccchhHHHHHHhhhC
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKH 331 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH 331 (541)
|.|+ .|+|.|....-+.+||++ |
T Consensus 1 y~C~--~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCP--ICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEET--TTTEEESSHHHHHHHHHH-H
T ss_pred CCCC--CCCCccCCHHHHHHHHhH-C
Confidence 6798 599999999999999987 5
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.69 E-value=0.74 Score=53.58 Aligned_cols=10 Identities=10% Similarity=0.398 Sum_probs=6.6
Q ss_pred HhhhhHHHhh
Q 009169 288 DALDPFVRKI 297 (541)
Q Consensus 288 e~le~~V~k~ 297 (541)
+.|+.||.+|
T Consensus 426 kLIEecISqI 435 (1102)
T KOG1924|consen 426 KLIEECISQI 435 (1102)
T ss_pred HHHHHHHHHH
Confidence 4567777776
No 9
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=86.34 E-value=0.55 Score=32.84 Aligned_cols=30 Identities=33% Similarity=0.464 Sum_probs=25.5
Q ss_pred ccccCCCCccccccchhHHHHHHh-hhChHHHH
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLK-LKHPELVI 336 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~-nKH~E~v~ 336 (541)
+|.|.+ |++-|....-+..|+. .||.+.|+
T Consensus 3 ~~~C~~--C~~~~~~~~~~~~H~~gk~H~~~~~ 33 (35)
T smart00451 3 GFYCKL--CNVTFTDEISVEAHLKGKKHKKNVK 33 (35)
T ss_pred CeEccc--cCCccCCHHHHHHHHChHHHHHHHH
Confidence 689987 9999999999999998 66776654
No 10
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=82.94 E-value=0.5 Score=31.81 Aligned_cols=24 Identities=33% Similarity=0.757 Sum_probs=20.7
Q ss_pred ccccCCCCccccccchhHHHHHHhhh
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLK 330 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nK 330 (541)
+|.|.+ |.|-|+...-+..|+..|
T Consensus 1 q~~C~~--C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 1 QFYCDA--CDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp -CBBTT--TTBBBSSHHHHHCCTTSH
T ss_pred CCCccc--CCCCcCCHHHHHHHHccC
Confidence 478986 999999999999999853
No 11
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=82.72 E-value=1.3 Score=45.03 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=50.4
Q ss_pred CChhhHHHhHHHHHHHHHHHhhhhccc-ccccCCCCcccccccccCCCCCCceeecccccccCcchhhHHHHHHHHHHHH
Q 009169 141 SEPRRIQVDIEQAQALVRKLDSEKGIT-ENILCGSDNDKMNREKSHGSTGPVIIIRGLTSVKGLEGVELLDTLITYLWRI 219 (541)
Q Consensus 141 S~p~RI~~Dl~qa~~Li~kLDaE~gi~-~n~L~~~d~~~~~~e~s~~~~gp~~~~rg~~~~~~~e~~~~LD~lI~YLRrV 219 (541)
+.-.++..++.-|+.....|+-++|.- ...+.--+.. +.+ +. -+.++. +...+.+-..+.|-.+.-|||--
T Consensus 167 ~~kk~~i~~vr~~~~a~~~l~~~~g~~~ps~~kk~e~~--~~e-~~-~~k~~e----~~E~eeei~Ee~lt~in~~LR~e 238 (268)
T KOG1994|consen 167 EDKKNMIPMVRESLEASPALKGEKGFGRPSTLKKCETS--IIE-SR-ITKDTE----LAELEEEIIEERLTKINIFLRSE 238 (268)
T ss_pred hhhhhhHHHHHHHHHhhHHhcCccccCCcchhhhcccc--chh-hh-ccCccc----hhHHHHHHHHHHHHHHHHHHhcc
Confidence 456689999999999999999888752 2222211110 000 00 000110 00111111146799999999999
Q ss_pred hhccccccccccc
Q 009169 220 HGVDYYGMVETSE 232 (541)
Q Consensus 220 Hs~dYY~~~E~~e 232 (541)
|-|||||++.|..
T Consensus 239 h~YC~fCG~~y~~ 251 (268)
T KOG1994|consen 239 HYYCFFCGIKYKD 251 (268)
T ss_pred ceEEEEeccccCC
Confidence 9999999999864
No 12
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=0.99 Score=49.88 Aligned_cols=44 Identities=32% Similarity=0.422 Sum_probs=38.5
Q ss_pred ccCcccccCCCCccccccchhHHHHHHh-hhChHHHHHHHhhHHHHH
Q 009169 301 KYGWKYGCGAKGCTKLFHAAEFVHKHLK-LKHPELVIELTSKVREEL 346 (541)
Q Consensus 301 ~~g~K~~C~~~~CtKlFKg~eFV~KHI~-nKH~E~v~~~~~kv~E~~ 346 (541)
++|+-+-|.+ |+|.||..-=+..|+. +||-+.|.++++++.|..
T Consensus 288 ~~ge~lyC~v--CnKsFKseKq~kNHEnSKKHkenv~eLrqemEEEe 332 (508)
T KOG0717|consen 288 NEGEVLYCVV--CNKSFKSEKQLKNHENSKKHKENVAELRQEMEEEE 332 (508)
T ss_pred hcCCceEEee--ccccccchHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3355589998 9999999999999998 899999999999886665
No 13
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=80.60 E-value=0.79 Score=38.31 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=23.8
Q ss_pred ccccCCCCccccccchhHHHHHHhhh-ChHHHHH
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLK-HPELVIE 337 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nK-H~E~v~~ 337 (541)
+|.|.+ |++.|+..+=+.+||..+ |.....+
T Consensus 50 ~~~C~~--C~~~f~s~~~l~~Hm~~~~H~~~~~~ 81 (100)
T PF12756_consen 50 SFRCPY--CNKTFRSREALQEHMRSKHHKKRNSE 81 (100)
T ss_dssp SEEBSS--SS-EESSHHHHHHHHHHTTTTC-S--
T ss_pred CCCCCc--cCCCCcCHHHHHHHHcCccCCCcccc
Confidence 699986 999999999999999965 6665443
No 14
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=79.17 E-value=1.3 Score=28.77 Aligned_cols=23 Identities=30% Similarity=0.706 Sum_probs=20.5
Q ss_pred cccCCCCccccccchhHHHHHHhhh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLK 330 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nK 330 (541)
|.|.+ |.+.|....-++.|+..|
T Consensus 1 ~~C~~--C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDI--CNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETT--TTEEESSHHHHHHHHTTH
T ss_pred CCCCC--CCCCcCCHHHHHHHHCcC
Confidence 67987 999999999999999843
No 15
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=78.76 E-value=4.7 Score=47.36 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHhhh
Q 009169 149 DIEQAQALVRKLDSE 163 (541)
Q Consensus 149 Dl~qa~~Li~kLDaE 163 (541)
|+..-.++|+.|-+-
T Consensus 205 ~~k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 205 DIKNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444555555444
No 16
>smart00355 ZnF_C2H2 zinc finger.
Probab=75.80 E-value=2.2 Score=26.74 Aligned_cols=24 Identities=29% Similarity=0.841 Sum_probs=20.3
Q ss_pred cccCCCCccccccchhHHHHHHhhhCh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKHP 332 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH~ 332 (541)
|.|.. |.|.|....-+..|+. +|.
T Consensus 1 ~~C~~--C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPE--CGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCC--CcchhCCHHHHHHHHH-Hhc
Confidence 46875 9999999999999998 553
No 17
>PHA00616 hypothetical protein
Probab=74.81 E-value=1.3 Score=34.13 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=23.8
Q ss_pred cccCCCCccccccchhHHHHHHhhhChH
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKHPE 333 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH~E 333 (541)
|.|+ .|+|.|.-.--+.+|+++.|.+
T Consensus 2 YqC~--~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 2 YQCL--RCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred Cccc--hhhHHHhhHHHHHHHHHHhcCC
Confidence 5797 4999999999999999999988
No 18
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=67.57 E-value=4.9 Score=44.82 Aligned_cols=42 Identities=26% Similarity=0.574 Sum_probs=33.3
Q ss_pred hhhHHHhhhhcccCcc-cccCCCCccccccchhHHHHHHhhhChHHHHH
Q 009169 290 LDPFVRKIRDEKYGWK-YGCGAKGCTKLFHAAEFVHKHLKLKHPELVIE 337 (541)
Q Consensus 290 le~~V~k~~dE~~g~K-~~C~~~~CtKlFKg~eFV~KHI~nKH~E~v~~ 337 (541)
+-.|++++. .|+ |.|+. |.|+|...+=...||.++|+..+..
T Consensus 45 al~fak~n~----sWrFWiCp~--CskkF~d~~~~~~H~~~eH~~~l~P 87 (466)
T PF04780_consen 45 ALSFAKENK----SWRFWICPR--CSKKFSDAESCLSHMEQEHPAGLKP 87 (466)
T ss_pred HHHHHHhcC----ceeEeeCCc--ccceeCCHHHHHHHHHHhhhhhcCh
Confidence 346787642 233 78986 9999999999999999999997754
No 19
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=67.54 E-value=3.8 Score=27.11 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=21.4
Q ss_pred cccCCCCccccccchhHHHHHHhhhCh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKHP 332 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH~ 332 (541)
|.|.. |+|.|....=+.+|++..|.
T Consensus 2 ~~C~~--C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 2 FECDE--CGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp EEETT--TTEEESSHHHHHHHHCTTTT
T ss_pred CCCCc--cCCccCChhHHHHHhHHhcC
Confidence 57875 99999999999999977653
No 20
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=53.86 E-value=3.5 Score=41.57 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHHhhhhHHHhhhhcccCcccccCCCCccccccchhHHHHHHh
Q 009169 286 AVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLK 328 (541)
Q Consensus 286 ~~e~le~~V~k~~dE~~g~K~~C~~~~CtKlFKg~eFV~KHI~ 328 (541)
++++|+++|+++.+.||.- =.|.-+.=+--|.-.+...||-.
T Consensus 62 ve~~v~~~~~e~~~~K~~C-~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 62 VEKFVQKNTKEEDEDKWRC-PLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp HGGGEEEEE-SSSSEEEEE--SSS-EESSHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHcCCEECC-CCCCcccCChHHHHHHHhhcCHH
Confidence 5668888888876667753 34654444477888888888864
No 21
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=53.59 E-value=9.4 Score=28.26 Aligned_cols=27 Identities=37% Similarity=0.619 Sum_probs=19.9
Q ss_pred cccccCCCCccccccc----hhHHHHHHhhhCh
Q 009169 304 WKYGCGAKGCTKLFHA----AEFVHKHLKLKHP 332 (541)
Q Consensus 304 ~K~~C~~~~CtKlFKg----~eFV~KHI~nKH~ 332 (541)
.+..|.. |.|.+++ ..=+..||.++||
T Consensus 15 ~~a~C~~--C~~~~~~~~~~ts~l~~HL~~~hp 45 (45)
T PF02892_consen 15 KKAKCKY--CGKVIKYSSGGTSNLKRHLKKKHP 45 (45)
T ss_dssp S-EEETT--TTEE-----SSTHHHHHHHHHTTH
T ss_pred CeEEeCC--CCeEEeeCCCcHHHHHHhhhhhCc
Confidence 4789985 9999987 4788999999997
No 22
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=51.91 E-value=16 Score=41.99 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=39.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH-------------hhcCCcchHHHHHHHHHHHHHHHHHHH
Q 009169 10 LEDDILPAEAERRYQEYKSEYISTQKRVFFDAHKDEEWLK-------------DKYHPTNLVAVIERRNDLARKVAKDFL 76 (541)
Q Consensus 10 ~~D~isp~eA~~~Y~eYK~e~~~kq~r~FF~~HK~EeWFr-------------EKY~P~~l~~~~e~R~e~~~~~a~~F~ 76 (541)
+.++|||+|++++ ||-+-...--...+.+--++++|+ ||+.|...+ +...-|..++.--.
T Consensus 506 y~e~lspeeci~e---~kge~~~s~e~~~v~~D~~edff~vsk~~n~~~s~~~ek~~~~~fe----~L~kkw~s~~~lk~ 578 (1077)
T COG5192 506 YDESLSPEECIEE---YKGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESEFE----ELKKKWSSLAQLKS 578 (1077)
T ss_pred ccccCCHHHHHHH---hccccccccccccccccCchhhhhhhhhcccccccchhhhchhHHH----HHHHHHhhHHHHHH
Confidence 5689999998655 555554444455556666666776 677664433 33333443332222
Q ss_pred HHhhcCCCCCC
Q 009169 77 LDLQSGTLDLG 87 (541)
Q Consensus 77 ~dLesG~lD~~ 87 (541)
.=+..|+||..
T Consensus 579 RF~~~~~lds~ 589 (1077)
T COG5192 579 RFQKDATLDSI 589 (1077)
T ss_pred Hhhcccccccc
Confidence 22335666654
No 23
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=49.06 E-value=41 Score=34.82 Aligned_cols=33 Identities=24% Similarity=0.505 Sum_probs=23.7
Q ss_pred ccccCCCCcc-ccccchhHHHHHHhhhChHHHHHHHh
Q 009169 305 KYGCGAKGCT-KLFHAAEFVHKHLKLKHPELVIELTS 340 (541)
Q Consensus 305 K~~C~~~~Ct-KlFKg~eFV~KHI~nKH~E~v~~~~~ 340 (541)
-|.|.+ |- |||.|+-.-. |-..-|.|-|+.+-+
T Consensus 34 hfkchi--chkkl~sgpglsi-hcmqvhketid~ip~ 67 (341)
T KOG2893|consen 34 HFKCHI--CHKKLFSGPGLSI-HCMQVHKETIDKIPA 67 (341)
T ss_pred cceeee--ehhhhccCCCcee-ehhhhhhhhhhcccc
Confidence 578876 75 5788887654 677778888877643
No 24
>smart00805 AGTRAP Angiotensin II, type I receptor-associated protein. This family consists of several angiotensin II, type I receptor-associated protein (AGTRAP) sequences. AGTRAP is known to interact specifically with the C-terminal cytoplasmic region of the angiotensin II type 1 (AT(1)) receptor to regulate different aspects of AT(1) receptor physiology. The function of this family is unclear.
Probab=47.05 E-value=18 Score=34.93 Aligned_cols=13 Identities=54% Similarity=0.879 Sum_probs=11.1
Q ss_pred CccccCCCCCCCc
Q 009169 521 RSYQDLDAPEDEV 533 (541)
Q Consensus 521 r~y~dldap~~~~ 533 (541)
+||||+|+|.+.-
T Consensus 133 ~sYqdID~p~qp~ 145 (159)
T smart00805 133 SSYQTIDAPADPF 145 (159)
T ss_pred cccccccCCCCCC
Confidence 8999999998753
No 25
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=45.25 E-value=12 Score=25.05 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=18.2
Q ss_pred hhhHHHhhhhcccCcccccCCCCcccccc
Q 009169 290 LDPFVRKIRDEKYGWKYGCGAKGCTKLFH 318 (541)
Q Consensus 290 le~~V~k~~dE~~g~K~~C~~~~CtKlFK 318 (541)
+..+++..+.|+ .|.|+. |.|.|+
T Consensus 2 l~~H~~~H~~~k---~~~C~~--C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTGEK---PYKCPY--CGKSFS 25 (26)
T ss_dssp HHHHHHHHSSSS---SEEESS--SSEEES
T ss_pred HHHHhhhcCCCC---CCCCCC--CcCeeC
Confidence 345677777774 799985 999996
No 26
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=43.08 E-value=8.8 Score=42.34 Aligned_cols=27 Identities=22% Similarity=0.535 Sum_probs=23.4
Q ss_pred ccccCCCCccccccchhHHHHHHhhhChH
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLKHPE 333 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nKH~E 333 (541)
.|-|. .|.|+|+-.-|++||...-|.-
T Consensus 356 i~~C~--~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 356 IFSCH--TCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred eeecH--HhhhhhHHHHHHHHhHHhhhcc
Confidence 89998 4999999999999998776543
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=42.61 E-value=19 Score=28.08 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred ccccCCCCccccccchhHHHHHHhhhChH
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLKHPE 333 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nKH~E 333 (541)
.|.|+. |+|.|.. .-+.+|+..+|..
T Consensus 2 ~f~CP~--C~~~~~~-~~L~~H~~~~H~~ 27 (54)
T PF05605_consen 2 SFTCPY--CGKGFSE-SSLVEHCEDEHRS 27 (54)
T ss_pred CcCCCC--CCCccCH-HHHHHHHHhHCcC
Confidence 688885 8896655 4467788888876
No 28
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=41.77 E-value=20 Score=24.15 Aligned_cols=21 Identities=29% Similarity=0.611 Sum_probs=17.2
Q ss_pred cccCCCCccccccchhHHHHHHhh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKL 329 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~n 329 (541)
..|+. |+.+| .++-+.||+..
T Consensus 3 ~~C~~--CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPI--CGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCC--CCCEE-CHHHHHHHHHh
Confidence 36875 99999 89999999853
No 29
>KOG4702 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.91 E-value=65 Score=27.48 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 009169 3 YKQFIQELEDDILPAEAERRYQEYKSEYISTQKR 36 (541)
Q Consensus 3 fKqF~~~~~D~isp~eA~~~Y~eYK~e~~~kq~r 36 (541)
|++|+....-..+|-++-++-+||+.-...++++
T Consensus 31 Fee~v~~~krel~ppe~~~~~EE~~~~lRe~~a~ 64 (77)
T KOG4702|consen 31 FEEFVRGYKRELSPPEATKRKEEYENFLREQMAF 64 (77)
T ss_pred HHHHHHhccccCCChHHHhhHHHHHHHHHHHHHH
Confidence 8999987777888999999999999866666553
No 30
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=34.80 E-value=22 Score=22.90 Aligned_cols=24 Identities=33% Similarity=0.683 Sum_probs=17.3
Q ss_pred cccCCCCccccccchhHHHHHHhhhCh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKLKHP 332 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~nKH~ 332 (541)
|.|.. |+=... ..=+.+|++.+|+
T Consensus 1 y~C~~--C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPH--CSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SS--SS-EES-HHHHHHHHHHHHS
T ss_pred CCCCC--CCCcCC-HHHHHHHHHhhCc
Confidence 57875 886666 7778999999885
No 31
>PHA00733 hypothetical protein
Probab=33.92 E-value=29 Score=32.06 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=23.5
Q ss_pred ccccCCCCccccccchhHHHHHHhhhCh
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLKHP 332 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nKH~ 332 (541)
.|.|.. |+|.|....-+..|+..||.
T Consensus 99 ~~~C~~--CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 99 SKVCPV--CGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred CccCCC--CCCccCCHHHHHHHHHHhcC
Confidence 579985 99999999999999999996
No 32
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.59 E-value=25 Score=35.69 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=34.6
Q ss_pred hHHHHHHhhhhHHHhhhhcccCcccccCCCCccccccchhHHHHHHhhhC
Q 009169 282 IDAAAVDALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKH 331 (541)
Q Consensus 282 id~~~~e~le~~V~k~~dE~~g~K~~C~~~~CtKlFKg~eFV~KHI~nKH 331 (541)
++.-+.||-+.|... ..|...+-|.|-|-|||-|||..-=-+.|+--+|
T Consensus 122 Ld~HI~E~HDs~Fqa-~veRG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 122 LDAHILEWHDSLFQA-LVERGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred hhHHHHHHHHHHHHH-HHHcCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 444466777776655 4666568899999999999998865555654444
No 33
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=31.02 E-value=40 Score=39.96 Aligned_cols=55 Identities=36% Similarity=0.570 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCCCccccCCCCCCCCCCCCCChHHHHHHhHhcCCCCCCCCCCCCCCCCCCCCC
Q 009169 436 GGQGIRVAPPFPSDIPPPPVLMPVPGAGPLGPFVPAPPEVAMQMIRDQGGPPFEGGGRHGRPGPQISGP 504 (541)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~p~lmpvpgagp~gpfvpapp~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~ 504 (541)
|++|-|+ |||||++|+ .||.||= -||+-.-.-+-.|++ -.+.+.++..|...+||
T Consensus 703 g~pg~~~-------~PPPP~~~~---~gpgG~~--f~P~~~~~~~~~~~~--~~~~~~~~~~~~~~~gp 757 (894)
T KOG0132|consen 703 GGPGGHG-------IPPPPFFDR---GGPGGPP--FPPENPRGRLQRQSP--QWNREQRGMRGGGGAGP 757 (894)
T ss_pred CCCCCCC-------CCCCccccC---CCCCCCC--CCCCCcccccccCCc--cccccccccCCCCCCCC
No 34
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.89 E-value=73 Score=24.81 Aligned_cols=45 Identities=18% Similarity=0.362 Sum_probs=27.3
Q ss_pred HhhhhHHHhhhhcccCcccccCCCCccccccchhHHHHHHhhhChHHHHHHHh
Q 009169 288 DALDPFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTS 340 (541)
Q Consensus 288 e~le~~V~k~~dE~~g~K~~C~~~~CtKlFKg~eFV~KHI~nKH~E~v~~~~~ 340 (541)
+.+.+++..+.+. +=.||| |+--|-..+. .+|..++.+.++.+.+
T Consensus 7 ~~~~k~i~~l~~~----~~~CPl--C~r~l~~e~~--~~li~~~~~~i~~~~~ 51 (54)
T PF04423_consen 7 EELKKYIEELKEA----KGCCPL--CGRPLDEEHR--QELIKKYKSEIEELPE 51 (54)
T ss_dssp HHHHHHHHHHTT-----SEE-TT--T--EE-HHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CCcCCC--CCCCCCHHHH--HHHHHHHHHHHHhhhh
Confidence 3455666665443 229997 9999988877 6777777777776654
No 35
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=28.70 E-value=1.8e+02 Score=31.87 Aligned_cols=9 Identities=22% Similarity=0.028 Sum_probs=5.8
Q ss_pred CCccccccc
Q 009169 311 KGCTKLFHA 319 (541)
Q Consensus 311 ~~CtKlFKg 319 (541)
..|+|.|.+
T Consensus 157 ~~~NK~~~a 165 (498)
T KOG4849|consen 157 LSYNKTNQA 165 (498)
T ss_pred eccchhhHH
Confidence 357887743
No 36
>PHA02768 hypothetical protein; Provisional
Probab=26.35 E-value=44 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=20.2
Q ss_pred cccCCCCccccccchhHHHHHHhh
Q 009169 306 YGCGAKGCTKLFHAAEFVHKHLKL 329 (541)
Q Consensus 306 ~~C~~~~CtKlFKg~eFV~KHI~n 329 (541)
|.|. .|+|.|.-..-+..|+++
T Consensus 6 y~C~--~CGK~Fs~~~~L~~H~r~ 27 (55)
T PHA02768 6 YECP--ICGEIYIKRKSMITHLRK 27 (55)
T ss_pred cCcc--hhCCeeccHHHHHHHHHh
Confidence 7897 499999999999999998
No 37
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.31 E-value=74 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=19.3
Q ss_pred ccccCCCCccccccchhHHHHHHhhhCh
Q 009169 305 KYGCGAKGCTKLFHAAEFVHKHLKLKHP 332 (541)
Q Consensus 305 K~~C~~~~CtKlFKg~eFV~KHI~nKH~ 332 (541)
.+.|++ |.+.+.. =+..||...|.
T Consensus 31 ~v~CPi--C~~~~~~--~l~~Hl~~~H~ 54 (54)
T PF05605_consen 31 NVVCPI--CSSRVTD--NLIRHLNSQHR 54 (54)
T ss_pred CccCCC--chhhhhh--HHHHHHHHhcC
Confidence 689997 9998775 56679998873
No 38
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=23.77 E-value=67 Score=36.58 Aligned_cols=33 Identities=42% Similarity=0.838 Sum_probs=21.3
Q ss_pred CCCCCCCCCCC-ccccCCCCCCCCCCCCCChHHH
Q 009169 444 PPFPSDIPPPP-VLMPVPGAGPLGPFVPAPPEVA 476 (541)
Q Consensus 444 ~~~~~~~~~~p-~lmpvpgagp~gpfvpapp~~~ 476 (541)
|+-+++||.+| ++-=||---|+|||.|.||--+
T Consensus 233 P~~P~~~P~~~~L~~GvPPPPP~G~~PPPPP~~~ 266 (817)
T KOG1925|consen 233 PASPKELPTRDFLLSGVPPPPPKGPFPPPPPLAA 266 (817)
T ss_pred CCChhccCCchhhhcCCCCCCCCCCCCCCCCCcc
Confidence 34455666555 4444666678999999887633
No 39
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=22.77 E-value=19 Score=38.88 Aligned_cols=69 Identities=16% Similarity=0.339 Sum_probs=49.0
Q ss_pred hHHHhhhhcccCcccccCCCCccccccchhHHHHHHhhhChHHHHHHHhhHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 009169 292 PFVRKIRDEKYGWKYGCGAKGCTKLFHAAEFVHKHLKLKHPELVIELTSKVREELYFQNYMNDPDAPGGTPVMQQP 367 (541)
Q Consensus 292 ~~V~k~~dE~~g~K~~C~~~~CtKlFKg~eFV~KHI~nKH~E~v~~~~~kv~E~~yfnNYl~DP~rP~~~p~~~~~ 367 (541)
.++..+..++ +.++|- .|.|.|+...-++-|+++|.--.|.....+ .+--|.-||+.=++++ +++.++-
T Consensus 184 elLehLkekL--~r~~CL--yCekifrdkntLkeHMrkK~HrrinPknre-YDkfyiINY~ev~ks~--t~~~~e~ 252 (423)
T KOG2482|consen 184 ELLEHLKEKL--ERLRCL--YCEKIFRDKNTLKEHMRKKRHRRINPKNRE-YDKFYIINYLEVGKSW--TIVHSED 252 (423)
T ss_pred HHHHHHHHHH--hhheee--eeccccCCcHHHHHHHHhccCcccCCCccc-cceEEEEeHhhcCCcc--chhhhhh
Confidence 3444443333 578997 599999999999999998876667655433 3456788999999996 4444443
Done!