BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009171
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 182 bits (461), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 156/563 (27%), Positives = 240/563 (42%), Gaps = 75/563 (13%)
Query: 29 RSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITWNG 87
R Y W V Y +P + INGQFPGP I A D+++V L NKL E +I W+G
Sbjct: 4 RHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHG 63
Query: 88 VKQRRTTWQDGVLG-TNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVA 146
+ QR T W DG + C I P + Y F + D GTF Y + R+ G +G++ V
Sbjct: 64 ILQRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVD 122
Query: 147 QRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPV-----PDALLING-- 199
P+H DGE LL+SDW+ H+++ K+ S P+ P +L+NG
Sbjct: 123 PPQGKKEPFHY-DGEINLLLSDWW-----HQSIHKQEVGLSSKPIRWIGEPQTILLNGRG 176
Query: 200 ---------HHNSLSFTGQKG--------------KTYKFRVSNVGIATSINFRIQGHTL 236
+ ++L KG KTY+ R+++ ++NF I H L
Sbjct: 177 QFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQL 236
Query: 237 TLVEVEGAHCLQESYESIDIHVGQSVAVVVAM-HGPPKDYYIVASTRF----TKPILTTT 291
+VE +G + IDI+ G+S +V++ P ++Y++ TR T P LT
Sbjct: 237 LVVEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTRARHPNTPPGLTLL 296
Query: 292 AILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVR 351
L S P S P P P + +++ +TA P P +K R
Sbjct: 297 NYLPNSVSKLPTS-PPPQTPAWD---DFDRSKNFTYRITAAMGSPKP-------PVKFNR 345
Query: 352 TIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIK---------DT 402
I L N+ IN +++A+N +S P TP A +N+ FD N DT
Sbjct: 346 RIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDT 405
Query: 403 PTPGAPAKLGASVIPTTLHDYVEIVFQN------NETSVQSWHLDXXXXXXXXXXXXTWT 456
P ++G V + + V+++ QN N + WHL ++
Sbjct: 406 PPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFS 465
Query: 457 ADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSN 516
A+ NL + R+TV ++P W+AI DN GVW I ++G +
Sbjct: 466 AEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV 525
Query: 517 DERSLFTETDVPPNALFCGKAKR 539
++ +P AL CG +
Sbjct: 526 EKVG-----RIPTKALACGGTAK 543
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 132/290 (45%), Gaps = 32/290 (11%)
Query: 32 TWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWN 86
T T+T +SP G + GIL+NG GP I NDN +N++N LD P + I W+
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GVKQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNV 145
G+ QR T W DG G N CPI P + YKF GTF Y G G + +
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 AQRSVISVPYHIPDGEFTLL-VSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHN-- 202
+ + D E T++ ++DW+ ++Q + PDA LING
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWYH--IPAPSIQGAAQ-------PDATLINGKGRYV 177
Query: 203 -----SLSFTG-QKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDI 256
LS ++GK Y+ R+ ++ + F I GH LT++EV+G + + + I
Sbjct: 178 GGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQI 237
Query: 257 HVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTT-------AILHYDGS 299
GQ + V+ + P +Y+I A + L T AIL Y G+
Sbjct: 238 FTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA 287
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 132/290 (45%), Gaps = 32/290 (11%)
Query: 32 TWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWN 86
T T+T +SP G + GIL+NG GP I NDN +N++N LD P + I W+
Sbjct: 8 TMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWH 66
Query: 87 GVKQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNV 145
G+ QR T W DG G N CPI P + YKF GTF Y G G + +
Sbjct: 67 GLFQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVI 126
Query: 146 AQRSVISVPYHIPDGEFTLL-VSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHN-- 202
+ + D E T++ ++DW+ ++Q + PDA LING
Sbjct: 127 YDDNDPHAALYDEDDENTIITLADWYH--IPAPSIQGAAQ-------PDATLINGKGRYV 177
Query: 203 -----SLSFTG-QKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDI 256
LS ++GK Y+ R+ ++ + F I GH LT++EV+G + + + I
Sbjct: 178 GGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQI 237
Query: 257 HVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTT-------AILHYDGS 299
GQ + V+ + P +Y+I A + L T AIL Y G+
Sbjct: 238 FTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGA 287
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 103/372 (27%), Positives = 160/372 (43%), Gaps = 49/372 (13%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T++ G +SP G +Q IL+N FP P I D +N+I+ + + I W+G
Sbjct: 9 TISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNV-- 145
Q T W DG N CPI + Y FQ+ DQ GTF Y G G + V
Sbjct: 69 FQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYD 128
Query: 146 AQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS 205
Q S+ Y + D + ++DW+ H A + G +P DA LING S+
Sbjct: 129 PQDPHKSL-YDVDDDSTVITLADWY-----HLAAKV----GSPVPTADATLINGLGRSID 178
Query: 206 --------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIH 257
T KGK Y+FR+ ++ + F I GH+LT++E + + ++ +SI I
Sbjct: 179 TLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDSIQIF 238
Query: 258 VGQSVAVVVAMHGPPKDYYIVA-----STRFTKPILTTTAILHYDGSNTPPSLPLPIAPT 312
Q + V+ +Y+I A + F + +AIL YDG+ P+ PT
Sbjct: 239 AAQRYSFVLNADQDVGNYWIRALPNSGTRNFDGGV--NSAILRYDGA-------APVEPT 289
Query: 313 YHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNG 372
++T TN +A +G+ G+ + N A ++ +NG
Sbjct: 290 --------TSQTPSTNPLVESALTTLEGTAAPGSPAPGGVDLALNMAFGFAGG-KFTING 340
Query: 373 ISYVNPITPLKL 384
S+ P P+ L
Sbjct: 341 ASFTPPTVPVLL 352
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 155/369 (42%), Gaps = 42/369 (11%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T+T +SP G +Q +++NG PGP + D +N+I+ L + I W+G
Sbjct: 9 TITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q T W DG N CPI P ++ Y FQ+ DQ GTF Y G G V
Sbjct: 69 FQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 -RSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS- 205
+ Y + + + + ++DW+ + L R G DA LING + S
Sbjct: 129 PNDPHASRYDVDNDDTVITLADWYH---TAAKLGPRFPGGA-----DATLINGKGRAPSD 180
Query: 206 -------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
KGK Y+FR+ ++ + F I GH LT++EV+ + +SI I
Sbjct: 181 SVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSNTPPSLPLPIAPTYHI 315
Q + V+ + +Y+I A+ F +AIL YDG+ + PT +
Sbjct: 241 AQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPA-------VEPTTNQ 293
Query: 316 HWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISY 375
S+K + +L + P P G K + N A N + +NG S+
Sbjct: 294 TTSVKPLNEV--DLHPLVSTPVPGAPSSGGVDKAI------NMAFNFNGS-NFFINGASF 344
Query: 376 VNPITPLKL 384
V P P+ L
Sbjct: 345 VPPTVPVLL 353
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 155/369 (42%), Gaps = 42/369 (11%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T+T +SP G +Q +++NG PGP + D +N+I+ L + I W+G
Sbjct: 9 TITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q T W DG N CPI P ++ Y FQ+ DQ GTF Y G G V
Sbjct: 69 FQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 -RSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS- 205
+ Y + + + + ++DW+ + L R G DA LING + S
Sbjct: 129 PNDPHASRYDVDNDDTVITLADWYH---TAAKLGPRFPGGA-----DATLINGKGRAPSD 180
Query: 206 -------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
KGK Y+FR+ ++ + F I GH LT++EV+ + +SI I
Sbjct: 181 SVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSNTPPSLPLPIAPTYHI 315
Q + V+ + +Y+I A+ F +AIL YDG+ + PT +
Sbjct: 241 AQRYSFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPA-------VEPTTNQ 293
Query: 316 HWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISY 375
S+K + +L + P P G K + N A N + +NG S+
Sbjct: 294 TTSVKPLNEV--DLHPLVSTPVPGSPSSGGVDKAI------NMAFNFNGS-NFFINGASF 344
Query: 376 VNPITPLKL 384
V P P+ L
Sbjct: 345 VPPTVPVLL 353
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 156/371 (42%), Gaps = 47/371 (12%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T++ G +SP G +Q IL+N FP P I D +N+I+ + + I W+G
Sbjct: 9 TISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q T W DG N CPI + Y FQ+ DQ GTF Y G G + V
Sbjct: 69 FQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYD 128
Query: 148 RSVISVP-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS- 205
+ Y + D + ++DW+ H A + G +P DA LING S +
Sbjct: 129 PNDPHASLYDVDDDSTVITLADWY-----HLAAKV----GAPVPTADATLINGLGRSAAT 179
Query: 206 -------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
T KGK Y+FR+ ++ + F I GH+LT++E + + + +S+ I
Sbjct: 180 LAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFA 239
Query: 259 GQSVAVVVAMHGPPKDYYIVA-----STRFTKPILTTTAILHYDGSNTPPSLPLPIAPTY 313
Q + V+ +Y+I A + F T +AIL YDG+ P+ PT
Sbjct: 240 AQRYSFVLNADQDVDNYWIRALPNSGTQNFAGG--TNSAILRYDGA-------APVEPT- 289
Query: 314 HIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGI 373
++T TN +A +G+ G+ + N A + +NG
Sbjct: 290 -------TSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFAGG-NFTINGA 341
Query: 374 SYVNPITPLKL 384
S+ P P+ L
Sbjct: 342 SFTPPTVPVLL 352
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 156/371 (42%), Gaps = 47/371 (12%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T++ G +SP G +Q IL+N FP P I D +N+I+ + + I W+G
Sbjct: 9 TISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q T W DG N CPI + Y FQ+ DQ GTF Y G G + V
Sbjct: 69 FQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYD 128
Query: 148 RSVISVP-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS- 205
+ Y + D + ++DW+ H A + G +P DA LING S +
Sbjct: 129 PNDPHASLYDVDDDSTVITLADWY-----HLAAKV----GAPVPTADATLINGLGRSAAT 179
Query: 206 -------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
T KGK Y+FR+ ++ + F I GH+LT++E + + + +S+ I
Sbjct: 180 LAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDSLQIFA 239
Query: 259 GQSVAVVVAMHGPPKDYYIVA-----STRFTKPILTTTAILHYDGSNTPPSLPLPIAPTY 313
Q + V+ +Y+I A + F T +AIL YDG+ P+ PT
Sbjct: 240 AQRYSFVLNADQDVDNYWIRALPNSGTQNFAGG--TNSAILRYDGA-------APVEPT- 289
Query: 314 HIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGI 373
++T TN +A +G+ G+ + N A + +NG
Sbjct: 290 -------TSQTPSTNPLVESALTTLKGTAAPGSPTPGGVDLALNMAFGFAGG-NFTINGA 341
Query: 374 SYVNPITPLKL 384
S+ P P+ L
Sbjct: 342 SFTPPTVPVLL 352
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 157/369 (42%), Gaps = 42/369 (11%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLIT-----WNGV 88
T+T SP G +Q +++NG PGP + D +N+I+ L ++ W+G
Sbjct: 9 TITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q+ T W DG N CPI P ++ Y FQ+ +Q GTF Y G G V
Sbjct: 69 FQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 -RSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSF 206
+ Y + + + + ++DW+ + L R G DA LING + S
Sbjct: 129 PNDPHASRYDVDNDDTVITLADWYH---TAAKLGPRFPAGA-----DATLINGKGRAPSD 180
Query: 207 TGQ--------KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
T KGK +FR+ ++ + F I GH LT++EV+ ++ S +SI I
Sbjct: 181 TSAELSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSNTPPSLPLPIAPTYHI 315
Q + V+ + +Y+I A+ F +AIL YDG+ + PT +
Sbjct: 241 AQRYSFVLNANQAVDNYWIRANPNFGNVGFNGGINSAILRYDGAPA-------VEPTTNQ 293
Query: 316 HWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISY 375
S+K + NL + P P G K + N A N + +NG S+
Sbjct: 294 TTSVKPLNEV--NLHPLVSTPVPGSPSSGGVDKAI------NMAFNFNGS-NFFINGASF 344
Query: 376 VNPITPLKL 384
V P P+ L
Sbjct: 345 VPPSVPVLL 353
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 26/284 (9%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T+T +SP G +Q +++NG PGP I D +N+I+ L + I W+G
Sbjct: 9 TITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q+ T W DG N CPI ++ Y FQ+ DQ GTF Y G G V
Sbjct: 69 FQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 RSVISVP-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSF 206
+ + Y + + + + + DW+ + +L + L DA LING S S
Sbjct: 129 PNDPAADLYDVDNDDTVITLVDWYH-------VAAKLGPAFPLGA-DATLINGKGRSPST 180
Query: 207 TGQK--------GKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
T GK Y+FR+ ++ + F I GH +T++E + + +SI I
Sbjct: 181 TTADLSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGS 299
Q + V+ + +Y+I A+ F T +AIL YDG+
Sbjct: 241 AQRYSFVLEANQAVDNYWIRANPNFGNVGFTGGINSAILRYDGA 284
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 28/286 (9%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T++ ++P G + ++ NG FPGP I DN +N+I+ L + I W+G+
Sbjct: 9 TISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGL 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q T W DG N CPI +++ Y F + DQ GTF Y G G + V
Sbjct: 69 FQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYD 128
Query: 148 RS-VISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLING------- 199
S + Y + D + +SDW+ H A +L + P D++LING
Sbjct: 129 PSDPYASMYDVDDDTTVITLSDWY-----HTA--AKLGPAFP-PNADSVLINGLGRFAGG 180
Query: 200 HHNSLS-FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
+ + L+ T ++ K Y+FR+ ++ + F I GH +T++EV+G + +SI I
Sbjct: 181 NASDLAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILTT----TAILHYDGSN 300
Q + V+ +Y+I A T I TT +AIL Y G++
Sbjct: 241 SQRYSFVLNATQSVDNYWIRAIPN-TGTIDTTGGLNSAILRYSGAD 285
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/285 (28%), Positives = 124/285 (43%), Gaps = 26/285 (9%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
TVT I P G + I++N FP P I DN +NL+N++ + I W+G
Sbjct: 9 TVTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q+ T W DG N CPI +++ Y FQ+ Q GTF Y G G V
Sbjct: 69 FQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 RSVISVPYHIPDGEFTLL-VSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS- 205
+ + D E T++ ++DW+ L R G D+ LING S S
Sbjct: 129 PNDPHANLYDVDDESTVITLADWYH---VAAKLGPRFPKGA-----DSTLINGLGRSTST 180
Query: 206 -------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
+ KGK Y+FR+ ++ + F I H LT++E +G + +SI I
Sbjct: 181 PTADLAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSN 300
Q + V+ + +Y+I A+ F +AIL YD ++
Sbjct: 241 AQRYSFVLNANQDVDNYWIRANPNFGTTGFADGVNSAILRYDDAD 285
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 95.1 bits (235), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 132/491 (26%), Positives = 184/491 (37%), Gaps = 70/491 (14%)
Query: 35 VTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGVK 89
V +SP G + I++NG FP P I D +N+++ L + I W+G
Sbjct: 10 VANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFF 69
Query: 90 QRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQR 148
Q T W DG N CPI ++ Y F + DQ GTF Y G G V
Sbjct: 70 QAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 149 SVISVPYHIPDGEFTLL-VSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLS-- 205
+ D E T++ ++DW+ H A RL + L DA LING S S
Sbjct: 130 KDPHASRYDVDNESTVITLTDWY-----HTA--ARLGPRFPLGA-DATLINGLGRSASTP 181
Query: 206 ------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVG 259
Q GK Y+FR+ ++ + F I GH LT++EV+G + +SI I
Sbjct: 182 TAALAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAA 241
Query: 260 QSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSNTPPSLPLPIA-PTYHI 315
Q + V+ + +Y+I A+ F +AIL Y G+ P+A PT
Sbjct: 242 QRYSFVLNANQTVGNYWIRANPNFGTVGFAGGINSAILRYQGA--------PVAEPT--T 291
Query: 316 HWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISY 375
+ I TNL A P P G K + N A N + +N S+
Sbjct: 292 TQTTSVIPLIETNLHPLARMPVPGSPTPGGVDKAL------NLAFNFNGT-NFFINNASF 344
Query: 376 VNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNNETSV 435
P P+ L DL PA SV P H +EI +
Sbjct: 345 TPPTVPVLLQILSGAQTAQDL----------LPA---GSVYPLPAHSTIEITLPATALAP 391
Query: 436 QS---WHLDXXXXXXXXXXXXTWTADIRKRYNLNDAITRHTVQV-YPQSWSAIYVSL--D 489
+ +HL T YN ND I R V P + + + D
Sbjct: 392 GAPHPFHLHGHAFAVVRSAGST-------TYNYNDPIFRDVVSTGTPAAGDNVTIRFQTD 444
Query: 490 NKGVWNLRSAI 500
N G W L I
Sbjct: 445 NPGPWFLHCHI 455
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/369 (25%), Positives = 152/369 (41%), Gaps = 42/369 (11%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLIT-----WNGV 88
T+T SP G +Q +++NG PGP + D +N+I+ L ++ W+G
Sbjct: 9 TITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q+ T W DG N CPI P ++ Y FQ+ +Q GTF Y G G V
Sbjct: 69 FQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 -RSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSF 206
+ Y + + + T+ ++DW+ + L +G D+ LING + S
Sbjct: 129 PNDPHASRYDVDNDDTTITLADWYH---TAAKLGPAFPNGA-----DSTLINGKGRAPSD 180
Query: 207 TGQ--------KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
+ KGK +FR+ ++ + F I GH T++E + + + +SI I
Sbjct: 181 SSAQLSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGSNTPPSLPLPIAPTYHI 315
Q + + + +Y+I A+ F +AIL YDG+ + PT +
Sbjct: 241 AQRYSFTLNANQAVDNYWIRANPNFGNVGFNGGINSAILRYDGAPA-------VEPTTNQ 293
Query: 316 HWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISY 375
S + TNL + P P G K + N A N + +NG S+
Sbjct: 294 STSTQPLN--ETNLHPLVSTPVPGSPAAGGVDKAI------NMAFNFNGS-NFFINGASF 344
Query: 376 VNPITPLKL 384
P P+ L
Sbjct: 345 TPPSVPVLL 353
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 36/297 (12%)
Query: 29 RSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-ITWNG 87
R Y +V TI+P G + + NG PGPAI A DN+I+++ N L+ I W+G
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 88 VKQRRTTWQDGVLG-TNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVA 146
++Q + DGV G T CPI P TYKFQ+ Q GT Y + G FG + +
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 147 QRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDAL---LINGHH-- 201
+ + + + DW +H+++ + + D L P AL L+NG +
Sbjct: 187 GPATADYDEDVG----VIFLQDW-----AHESVFE-IWDTARLGAPPALENTLMNGTNTF 236
Query: 202 --------------NSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCL 247
T +G Y+ R+ NVGI + F I HTLT++ + +
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 248 QESYESIDIHVGQSVAVVVAMHGPPKDYYIVA----STRFTKPILTTTAILHYDGSN 300
+ +++ I +GQ V+V + +Y+I + T IL YD S+
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS 353
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 131/297 (44%), Gaps = 36/297 (12%)
Query: 29 RSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-ITWNG 87
R Y +V TI+P G + + NG PGPAI A DN+I+++ N L+ I W+G
Sbjct: 68 REYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHG 127
Query: 88 VKQRRTTWQDGVLG-TNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVA 146
++Q + DGV G T CPI P TYKFQ+ Q GT Y + G FG + +
Sbjct: 128 IRQLGSLEYDGVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIIN 186
Query: 147 QRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDAL---LINGHH-- 201
+ + + + DW +H+++ + + D L P AL L+NG +
Sbjct: 187 GPATADYDEDVG----VIFLQDW-----AHESVFE-IWDTARLGAPPALENTLMNGTNTF 236
Query: 202 --------------NSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCL 247
T +G Y+ R+ NVGI + F I HTLT++ + +
Sbjct: 237 DCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIV 296
Query: 248 QESYESIDIHVGQSVAVVVAMHGPPKDYYIVA----STRFTKPILTTTAILHYDGSN 300
+ +++ I +GQ V+V + +Y+I + T IL YD S+
Sbjct: 297 PYTTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSSS 353
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/366 (25%), Positives = 154/366 (42%), Gaps = 45/366 (12%)
Query: 40 ISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGVKQRRTT 94
I P G + + G FPGP I DN + N+L E + I W+G Q+ T
Sbjct: 16 IVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTN 75
Query: 95 WQDG-VLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISV 153
W DG T CPI ++++Y F + GT+ Y G G V +
Sbjct: 76 WADGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDA 135
Query: 154 P-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLING----HHNSLS--- 205
Y + D + ++DW+ L K + G ++ D+ LI+G H N +
Sbjct: 136 NLYDVDDDTTIITLADWYH------VLAKEMGAGGAI-TADSTLIDGLGRTHVNVAAVPL 188
Query: 206 --FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVA 263
T + GK Y+ R+ ++ + +F I GH +T++E +G + + + I I Q +
Sbjct: 189 SVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYS 248
Query: 264 VVVAMHGPPKDYYIVASTR-----FTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWS 318
V+ + P +Y+I A+ F I +AIL YDG+ T + P+ +A T H
Sbjct: 249 FVLNANQPVGNYWIRANPNSGGEGFDGGI--NSAILRYDGATT--ADPVTVASTVHTKCL 304
Query: 319 MKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNP 378
++ T L+ N NP H G + L + + +NG+S+ P
Sbjct: 305 IE---TDLHPLSRNGVPGNP----HQGGADCNLNLSLGFACGN------FVINGVSFTPP 351
Query: 379 ITPLKL 384
P+ L
Sbjct: 352 TVPVLL 357
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 122/284 (42%), Gaps = 26/284 (9%)
Query: 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGV 88
T+T +SP G ++ +++NG P P I D +N+I++L + I W+G
Sbjct: 9 TLTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGF 68
Query: 89 KQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQ 147
Q+ T W DG N CPI ++ Y FQ+ DQ GTF Y G G V
Sbjct: 69 FQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYD 128
Query: 148 RSVISVP-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSF 206
+ Y I + + + ++DW+ L R G D+ LING +
Sbjct: 129 PNDPHASLYDIDNDDTVITLADWYH---VAAKLGPRFPFGS-----DSTLINGLGRTTGI 180
Query: 207 TGQ--------KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHV 258
+GK Y+FR+ ++ + F I HT+T++E + + +SI I
Sbjct: 181 APSDLAVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFA 240
Query: 259 GQSVAVVVAMHGPPKDYYIVASTRFTKPILT---TTAILHYDGS 299
Q + V+ P +Y+I A+ F +AIL YDG+
Sbjct: 241 AQRYSFVLDASQPVDNYWIRANPAFGNTGFAGGINSAILRYDGA 284
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 111/243 (45%), Gaps = 10/243 (4%)
Query: 29 RSYTWTVTYGTISPFGVPQQGIL-INGQFPGPAIEAVTNDNIIVNLINKLDEPFL-ITWN 86
++ WT + + G+ + ++ NGQFP P I D + + L N ++ + ++
Sbjct: 3 HTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFH 62
Query: 87 GVKQRRTTWQDGV-LGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNV 145
G+ Q T DGV T CPI P S Y F + +GT+ Y T G G +
Sbjct: 63 GLFQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFII 122
Query: 146 AQRSVISVPYHIPDGEFTLLVSDWFKNFSSH--KALQKRLEDGYSLPVPDALLINGHHNS 203
S PY D E +L +S+W+ + + K+ + P+P L++N N
Sbjct: 123 KDDSF---PYDY-DEELSLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTMN- 177
Query: 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVA 263
L++ Q TY R+ NVG S F I+ H +T+VE++G + + + I V Q
Sbjct: 178 LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYT 237
Query: 264 VVV 266
V+V
Sbjct: 238 VLV 240
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 122/291 (41%), Gaps = 32/291 (10%)
Query: 30 SYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLIT----- 84
S VT ++ G + +++NG PGP I D +N+IN L ++
Sbjct: 5 SANLVVTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVH 64
Query: 85 WNGVKQRRTTWQDGVLGTN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAV 143
W+G Q+ T W DG N CPI S++ Y F Q GTF Y G G
Sbjct: 65 WHGFFQKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPF 124
Query: 144 NVAQRSVISVP-YHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPV-PDALLINGHH 201
V + S Y + + + ++DW+ H A Q +G + P DA LING
Sbjct: 125 VVYDPNDPSANLYDVDNLNTVITLTDWY-----HTAAQ----NGPAKPGGADATLINGQG 175
Query: 202 NSLS--------FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYES 253
S + GK Y+FR+ + + F I GH +T+++V+ +
Sbjct: 176 RGPSSPSADLAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLK 235
Query: 254 IDIHVGQSVAVVVAMHGPPKDYYIVASTR-----FTKPILTTTAILHYDGS 299
I I+ Q + ++ + +Y+I A+ FT I +AIL Y G+
Sbjct: 236 IQIYAAQRYSFILNANQAVNNYWIRANPNQGNVGFTNGI--NSAILRYSGA 284
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 117/274 (42%), Gaps = 27/274 (9%)
Query: 47 QQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL-----ITWNGVKQRRTTWQDGVLG 101
+ + G P I +D +N+I++L + + I W+G Q TT DG
Sbjct: 43 RSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDGPAF 102
Query: 102 TN-CPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVP-YHIPD 159
N CPI PN ++ Y F + Q GT+ Y G GA V + + Y + D
Sbjct: 103 VNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDD 162
Query: 160 GEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLING-HHNSLSFTG--------QK 210
+ ++DW+ + S+ D LING NS + + Q
Sbjct: 163 ASTVITIADWYHSLSTVLFPNPNKAPPAP----DTTLINGLGRNSANPSAGQLAVVSVQS 218
Query: 211 GKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHG 270
GK Y+FR+ + + F I GH +T++EV+G + +S+ I GQ +VVV +
Sbjct: 219 GKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTVDSLTIFAGQRYSVVVEANQ 278
Query: 271 PPKDYYIVAS-----TRFTKPILTTTAILHYDGS 299
+Y+I A+ FT I +AI Y G+
Sbjct: 279 AVGNYWIRANPSNGRNGFTGGI--NSAIFRYQGA 310
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 119/286 (41%), Gaps = 31/286 (10%)
Query: 40 ISPFGVPQQGI-LINGQFPGPAIEAVTNDNIIVNLINKL-DEPFLITWNGVKQRRTTWQD 97
+ P GV ++ + LING GP I A D + V +IN L I W+G+ Q+ T D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHD 106
Query: 98 GVLG-TNCPIPPNSNW-TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPY 155
G G T CPIPP TY+++ + Q GT Y G G + + S+PY
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPY 163
Query: 156 HIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHH-NSLSFTGQ----- 209
I G F ++D++ + + P D +LING N + GQ
Sbjct: 164 DIDLGVFP--ITDYYYRAADDLV---HFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVT 218
Query: 210 --KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVA 267
GK ++ R+ N + HT+T++ + + +S+ + VGQ VV+
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVID 278
Query: 268 MHGPPKDYYI-------VASTRFTKPILTTTAILHYDGSNTPPSLP 306
P +Y+ A P AI HY G+ P LP
Sbjct: 279 ASRAPDNYWFNVTFGGQAACGGSLNP--HPAAIFHYAGA--PGGLP 320
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 119/286 (41%), Gaps = 31/286 (10%)
Query: 40 ISPFGVPQQGI-LINGQFPGPAIEAVTNDNIIVNLINKL-DEPFLITWNGVKQRRTTWQD 97
+ P GV ++ + LING GP I A D + V +IN L I W+G+ Q+ T D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHD 106
Query: 98 GVLG-TNCPIPPNSNW-TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPY 155
G G T CPIPP TY+++ + Q GT Y G G + + S+PY
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPY 163
Query: 156 HIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHH-NSLSFTGQ----- 209
I G F ++D++ + + P D +LING N + GQ
Sbjct: 164 DIDLGVFP--ITDYYYRAADDLV---HFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVT 218
Query: 210 --KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVA 267
GK ++ R+ N + HT+T++ + + +S+ + VGQ VV+
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVID 278
Query: 268 MHGPPKDYYI-------VASTRFTKPILTTTAILHYDGSNTPPSLP 306
P +Y+ A P AI HY G+ P LP
Sbjct: 279 ASRAPDNYWFNVTFGGQAACGGSLNP--HPAAIFHYAGA--PGGLP 320
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 119/286 (41%), Gaps = 31/286 (10%)
Query: 40 ISPFGVPQQGI-LINGQFPGPAIEAVTNDNIIVNLINKL-DEPFLITWNGVKQRRTTWQD 97
+ P GV ++ + LING GP I A D + V +IN L I W+G+ Q+ T D
Sbjct: 47 MGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHD 106
Query: 98 GVLG-TNCPIPPNSNW-TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPY 155
G G T CPIPP TY+++ + Q GT Y G G + + S+PY
Sbjct: 107 GANGVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQI--NGPASLPY 163
Query: 156 HIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHH-NSLSFTGQ----- 209
I G F ++D++ + + P D +LING N + GQ
Sbjct: 164 DIDLGVFP--ITDYYYRAADDLV---HFTQNNAPPFSDNVLINGTAVNPNTGEGQYANVT 218
Query: 210 --KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVA 267
GK ++ R+ N + HT+T++ + + +S+ + VGQ VV+
Sbjct: 219 LTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVID 278
Query: 268 MHGPPKDYYI-------VASTRFTKPILTTTAILHYDGSNTPPSLP 306
P +Y+ A P AI HY G+ P LP
Sbjct: 279 ASRAPDNYWFNVTFGGQAACGGSLNP--HPAAIFHYAGA--PGGLP 320
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 124/285 (43%), Gaps = 30/285 (10%)
Query: 40 ISPFGVPQQGI-LINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITWNGVKQRRTTWQD 97
I P GV + + L+N + GP I A DNI V +IN L + W+G++Q + D
Sbjct: 88 IGPDGVLKNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFND 147
Query: 98 GVLG-TNCPIPPNSNW-TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPY 155
G G T CPIPP TYKF+ Q GT Y G G + + + S+PY
Sbjct: 148 GANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPA--SLPY 204
Query: 156 HIPDGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLING-HHNSLSFTGQ----- 209
I G F L+ D++ S+ + + +G P D +L NG + + GQ
Sbjct: 205 DIDLGVFPLM--DYYYR-SADELVHFTQSNG--APPSDNVLFNGTARHPETGAGQWYNVT 259
Query: 210 --KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVA 267
GK ++ R+ N + GH +T++ + + S+ + VGQ V +
Sbjct: 260 LTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTID 319
Query: 268 MHGPPKDYYIVASTRFTKPILTTT------AILHYDGSNTPPSLP 306
+ P +Y+ + F + ++ AI Y G+ P +LP
Sbjct: 320 ANSPVGNYWF--NVTFGDGLCGSSNNKFPAAIFRYQGA--PATLP 360
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 16/222 (7%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNW 112
G FPGP + D + + L N+L EP + W+G+ V IPP +W
Sbjct: 41 GGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL-----PISPKVDDPFLEIPPGESW 95
Query: 113 TYKFQM-KDQIGTFNYFPSTKVHRA---FGGFGAVNVAQRSVISVPYHIPDGEFTLLVSD 168
TY+F + K+ GTF Y P A F G V + S+ ++P E L++ D
Sbjct: 96 TYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAIPELREAEEHLLVLKD 155
Query: 169 WFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSIN 228
+ D + D +L+NG + QK T + R+ N A
Sbjct: 156 L--ALQGGRPAPHTPMDWMNGKEGDLVLVNGALRP-TLVAQKA-TLRLRLLNASNARYYR 211
Query: 229 FRIQGHTLTLVEVEGAHCLQESYESIDIHV--GQSVAVVVAM 268
+Q H L L+ +G L+E E ++ + G+ V+V +
Sbjct: 212 LALQDHPLYLIAADGG-FLEEPLEVSELLLAPGERAEVLVRL 252
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 52 INGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGV-LGTNCPIPPNS 110
NGQ P P I + D++ VN+ N P I W+G+ QR T DGV T I P
Sbjct: 27 FNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGD 86
Query: 111 NWTYKFQMKDQIGTFNYFPSTKVHRAF---GGFGAVNVAQRSVISVPYHIPDGEFTLLVS 167
+TYKF+ + GT Y V+ G +G + V ++ + + + ++ L++S
Sbjct: 87 TFTYKFK-AEPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIEKTVTK-DYILMLS 144
Query: 168 DWFKNFSS 175
DW ++++
Sbjct: 145 DWVSSWAN 152
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 100/250 (40%), Gaps = 42/250 (16%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNW 112
NG P P IE D + + + NKL E I W+GV QDG + PI
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV--PPDQDG--SPHDPILAGEER 131
Query: 113 TYKFQM-KDQIGTFNYFPS---TKVHRAFGGFGAVNV--AQRSVISVPYHIPDGEFTLLV 166
Y+F++ +D GT+ Y P T + F G V A++ +S H+ + + L++
Sbjct: 132 IYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALS---HLKEKD--LMI 186
Query: 167 SDWFKNFSSHKALQKRLEDGYSLP-----------VPDALLINGHHNSLSFTGQKGKTYK 215
SD RL++ +P + +LING + +
Sbjct: 187 SDL------------RLDENAQIPNNNLNDWLNGREGEFVLING---QFKPKIKLATNER 231
Query: 216 FRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDY 275
R+ N A +N RIQG LV +G + Y+ ++ + + V V + P
Sbjct: 232 IRIYNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKE-ELFLSPASRVEVLIDAPKDGN 290
Query: 276 YIVASTRFTK 285
+ + S + +
Sbjct: 291 FKLESAYYDR 300
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 6/149 (4%)
Query: 159 DGEFTLLVSDWF-KNFSSHKALQKRLEDGYSLPVPDALLINGHHNSL----SFTGQKGKT 213
D EF ++ D++ K + LQ D P+ ++ NGH +L + + G+T
Sbjct: 164 DKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGET 223
Query: 214 YKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPK 273
+ V N G +F + G V VEG + E+ +S + G S A+V P
Sbjct: 224 VRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGS-AIVEFKVDIPG 282
Query: 274 DYYIVASTRFTKPILTTTAILHYDGSNTP 302
+Y +V + F L +G+ P
Sbjct: 283 NYTLVDHSIFRAFNKGALGQLKVEGAENP 311
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 40 ISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGV 99
I+P G+ +G NG+ PGP + A D + ++ N P I ++GV R T DG
Sbjct: 48 IAP-GIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGV--HRAT-MDGT 103
Query: 100 LGTNC-PIPPNSNWTYKFQ 117
G I P ++TY+F
Sbjct: 104 PGIGAGSIAPGQSFTYEFD 122
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 52 INGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSN 111
ING++ GP I D++ + N+L E +T G++ + G + PN++
Sbjct: 43 INGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPL----MGGPARMMSPNAD 98
Query: 112 WTYKFQMKDQIGTFNYFPST------KVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLL 165
W ++ T Y +T +V+ G V + +P H +F ++
Sbjct: 99 WAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVI 158
Query: 166 VSD-WFKNFSSHKALQKRLEDGYSLPVPDALLING 199
+ D NF + + E G V D LL+NG
Sbjct: 159 IQDKRLDNFGTPEY----NEPGSGGFVGDTLLVNG 189
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 47 QQGILINGQFPGPAIEAVTNDNIIVN--------LINKLDEPFLITWNGVKQRRTTWQDG 98
++ I G E V N II+ L NKL EP ++ W+G W +
Sbjct: 18 KEATYIEATASGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFD---VNWHND 74
Query: 99 VLGTNCPIPPNSNWTYKFQMKDQIGTFNYFP 129
+ I P ++ Y F + ++ GT+ Y P
Sbjct: 75 A-HPSFAITPGESYNYSFDVVNRAGTYLYHP 104
>pdb|4A66|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116a Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A67|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116e Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKQ|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498d Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4A68|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: D116n Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2WSD|A Chain A, Proximal Mutations At The Type 1 Cu Site Of
Cota-Laccase: I494a Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|1GSK|A Chain A, Crystal Structure Of Cota, An Endospore Coat Protein
From Bacillus Subtilis
pdb|1OF0|A Chain A, Crystal Structure Of Bacillus Subtilis Cota After 1h
Soaking With Ebs
pdb|1W6L|A Chain A, 3d Structure Of Cota Incubated With Cucl2
pdb|1W6W|A Chain A, 3d Structure Of Cota Incubated With Sodium Azide
pdb|1W8E|A Chain A, 3d Structure Of Cota Incubated With Hydrogen Peroxide
pdb|2BHF|A Chain A, 3d Structure Of The Reduced Form Of Cota
pdb|2X88|A Chain A, Crystal Structure Of Holocota
pdb|3ZDW|A Chain A, Substrate And Dioxygen Binding To The Endospore Coat
Laccase Cota From Bacillus Subtilis
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKP|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site:e498t Mutant
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2X87|A Chain A, Crystal Structure Of The Reconstituted Cota
Length = 513
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase
Trinuclear Site: E498l Mutant
Length = 507
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 53 NGQFPGPAIEAVTNDNIIVNLINKL 77
NG FPGP IE N+N+ V +N L
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNL 76
>pdb|2H85|A Chain A, Crystal Structure Of Nsp 15 From Sars
Length = 347
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 372 GISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIV 427
G++ + +PLKL D+ + I D T +K G SVI L D+VEI+
Sbjct: 255 GLAKRSQDSPLKLEDFIPMDSTVKNYFITDAQT--GSSKCGCSVIDLLLGDFVEII 308
>pdb|3OUZ|A Chain A, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUZ|B Chain B, Crystal Structure Of Biotin Carboxylase-Adp Complex From
Campylobacter Jejuni
pdb|3OUU|A Chain A, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
pdb|3OUU|B Chain B, Crystal Structure Of Biotin Carboxylase-Beta-Gamma-Atp
Complex From Campylobacter Jejuni
Length = 446
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 182 RLEDGYSLPVPDALLINGHHNSLSFTGQKGKTY 214
++ +GY+LP +++ +NGH T + KT+
Sbjct: 318 KVAEGYALPSQESIKLNGHSIECRITAEDSKTF 350
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 168 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 227
Query: 517 DE 518
E
Sbjct: 228 SE 229
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 21/141 (14%)
Query: 40 ISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDE--PFLITWNGVKQRRTTWQD 97
I G Q + NG PGP + D + + L+N P + ++G T
Sbjct: 46 IDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFHGA----TGALG 101
Query: 98 GVLGTNCPIPPNSNWTYKFQMKDQIGTFNYF--PSTKV--HRAFGGFGAVNVAQRSVISV 153
G TN + P T +F+ D+ GTF Y PS V H G G + V R +
Sbjct: 102 GAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPSGMVPWHVVSGMSGTLMVLPRDGLKD 158
Query: 154 PYHIP--------DGEFTLLV 166
P P GEF L +
Sbjct: 159 PAGAPLHYDRAYTIGEFDLYI 179
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 159 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 218
Query: 517 DE 518
E
Sbjct: 219 SE 220
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 148 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 207
Query: 517 DE 518
E
Sbjct: 208 SE 209
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 152 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 211
Query: 517 DE 518
E
Sbjct: 212 SE 213
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 153 RYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 212
Query: 517 DE 518
E
Sbjct: 213 SE 214
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 462 RYNLNDAITRHTVQVYPQSWS----AIYVSLDNKG-VWNLRSAIWERRYLGQELYLRVSN 516
RY L+D T +P WS +Y +K +W +WE LG+ Y R +N
Sbjct: 168 RYVLDDEETSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN 227
Query: 517 DE 518
E
Sbjct: 228 SE 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,334,180
Number of Sequences: 62578
Number of extensions: 739905
Number of successful extensions: 1715
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 110
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)