Query 009171
Match_columns 541
No_of_seqs 221 out of 1680
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 21:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 8E-111 2E-115 893.7 61.7 537 1-541 1-538 (539)
2 PLN02991 oxidoreductase 100.0 5E-109 1E-113 875.1 60.8 517 20-540 20-536 (543)
3 PLN02354 copper ion binding / 100.0 1E-108 3E-113 877.4 59.5 515 23-540 22-544 (552)
4 PLN00044 multi-copper oxidase- 100.0 7E-108 2E-112 870.6 59.5 533 5-541 4-561 (596)
5 PLN02792 oxidoreductase 100.0 2E-107 4E-112 864.9 59.4 513 25-540 13-529 (536)
6 PLN02168 copper ion binding / 100.0 1E-106 3E-111 858.5 59.7 509 26-537 24-544 (545)
7 KOG1263 Multicopper oxidases [ 100.0 1.2E-99 2E-104 798.6 58.8 521 18-540 18-561 (563)
8 TIGR03389 laccase laccase, pla 100.0 2.1E-99 5E-104 813.3 58.5 498 26-534 1-539 (539)
9 PLN02604 oxidoreductase 100.0 1.2E-95 3E-100 785.5 59.9 513 8-539 4-566 (566)
10 PLN02191 L-ascorbate oxidase 100.0 7.8E-96 2E-100 785.1 57.3 496 25-539 20-566 (574)
11 TIGR03388 ascorbase L-ascorbat 100.0 4.4E-95 1E-99 779.2 55.8 488 28-535 1-539 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 1.7E-93 3.7E-98 764.6 53.2 477 28-519 8-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 2E-79 4.3E-84 654.9 51.1 427 29-515 46-587 (587)
14 PRK10965 multicopper oxidase; 100.0 1.1E-79 2.4E-84 652.6 47.4 411 28-515 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 5.9E-78 1.3E-82 634.2 43.8 400 30-517 47-470 (471)
16 COG2132 SufI Putative multicop 100.0 4.6E-61 9.9E-66 508.6 43.6 411 30-516 34-450 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.9E-49 4.2E-54 396.7 25.7 263 23-300 22-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 7.3E-37 1.6E-41 261.6 11.7 115 34-148 1-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 4.3E-30 9.3E-35 228.7 11.5 108 409-516 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 2.4E-26 5.2E-31 209.1 13.2 139 160-299 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 1.4E-18 3E-23 154.3 12.7 101 44-146 38-148 (148)
22 TIGR02376 Cu_nitrite_red nitri 99.7 4.7E-16 1E-20 156.1 21.8 243 192-516 47-297 (311)
23 TIGR01480 copper_res_A copper- 99.7 3.2E-16 6.9E-21 168.8 11.3 100 45-146 483-587 (587)
24 TIGR03096 nitroso_cyanin nitro 99.5 2E-13 4.3E-18 117.0 11.9 118 9-143 6-131 (135)
25 TIGR03389 laccase laccase, pla 99.2 5.2E-10 1.1E-14 121.2 20.2 239 193-500 23-264 (539)
26 PLN02835 oxidoreductase 99.2 8.7E-10 1.9E-14 118.7 20.9 225 193-497 49-276 (539)
27 PRK10965 multicopper oxidase; 99.2 4E-10 8.6E-15 120.9 18.2 249 29-282 180-509 (523)
28 PLN02354 copper ion binding / 99.2 1.4E-09 3.1E-14 117.2 19.3 233 193-499 47-283 (552)
29 PLN02792 oxidoreductase 99.1 3.8E-09 8.2E-14 113.5 19.8 228 193-497 36-267 (536)
30 PLN02168 copper ion binding / 99.1 5.5E-09 1.2E-13 112.3 20.5 219 193-490 46-267 (545)
31 PLN02991 oxidoreductase 99.1 5.4E-09 1.2E-13 112.2 19.1 222 193-494 48-273 (543)
32 PRK10883 FtsI repressor; Provi 99.1 5.1E-09 1.1E-13 111.3 18.0 234 30-282 181-454 (471)
33 TIGR03390 ascorbOXfungal L-asc 99.1 1.4E-08 3E-13 109.9 20.7 242 193-498 28-281 (538)
34 PLN02604 oxidoreductase 99.0 2E-09 4.4E-14 117.0 11.7 90 415-518 56-146 (566)
35 TIGR03388 ascorbase L-ascorbat 99.0 4.1E-08 9E-13 106.5 20.7 256 193-499 21-280 (541)
36 PLN00044 multi-copper oxidase- 99.0 4.8E-08 1E-12 105.7 20.9 236 193-495 49-291 (596)
37 COG2132 SufI Putative multicop 98.9 2.6E-08 5.6E-13 106.1 16.2 227 44-282 186-435 (451)
38 PF07731 Cu-oxidase_2: Multico 98.9 1.8E-09 3.9E-14 95.8 5.8 90 58-148 33-137 (138)
39 PLN02191 L-ascorbate oxidase 98.8 3.5E-07 7.6E-12 99.5 19.4 254 193-497 43-301 (574)
40 PF07732 Cu-oxidase_3: Multico 98.7 4.2E-08 9E-13 84.0 7.2 90 414-517 26-116 (117)
41 PF13473 Cupredoxin_1: Cupredo 98.6 1E-07 2.2E-12 80.1 6.2 70 59-145 35-104 (104)
42 PRK02710 plastocyanin; Provisi 98.6 9.2E-07 2E-11 76.0 11.9 74 58-146 46-119 (119)
43 KOG1263 Multicopper oxidases [ 98.6 7.4E-06 1.6E-10 88.0 21.2 227 193-498 48-285 (563)
44 TIGR02656 cyanin_plasto plasto 98.3 3.6E-06 7.8E-11 69.9 8.4 82 57-146 15-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.1 8.9E-06 1.9E-10 73.9 8.1 94 412-516 58-157 (159)
46 PRK02888 nitrous-oxide reducta 98.1 1.4E-05 3E-10 85.6 9.8 101 38-148 532-635 (635)
47 PF00127 Copper-bind: Copper b 98.1 7.5E-06 1.6E-10 68.0 5.8 82 58-146 16-99 (99)
48 TIGR02657 amicyanin amicyanin. 98.0 3.5E-05 7.5E-10 61.7 8.3 74 58-146 10-83 (83)
49 TIGR03095 rusti_cyanin rusticy 98.0 3.5E-05 7.6E-10 68.7 8.6 89 414-514 52-147 (148)
50 TIGR03094 sulfo_cyanin sulfocy 97.8 0.0004 8.6E-09 62.2 12.7 99 49-148 74-187 (195)
51 PF06525 SoxE: Sulfocyanin (So 97.8 0.00034 7.3E-09 64.0 11.6 100 48-148 74-188 (196)
52 TIGR02656 cyanin_plasto plasto 97.6 0.0003 6.5E-09 58.4 7.5 83 414-515 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.5 0.00048 1E-08 58.5 8.4 75 58-148 14-89 (116)
54 COG3794 PetE Plastocyanin [Ene 97.5 0.00042 9E-09 59.5 8.0 75 59-147 54-128 (128)
55 TIGR03096 nitroso_cyanin nitro 97.4 0.00077 1.7E-08 58.3 7.8 59 415-500 62-120 (135)
56 TIGR03102 halo_cynanin halocya 97.1 0.0026 5.7E-08 53.9 8.5 73 58-146 41-115 (115)
57 PF13473 Cupredoxin_1: Cupredo 96.6 0.0051 1.1E-07 51.5 6.3 62 415-505 36-97 (104)
58 PF00127 Copper-bind: Copper b 96.6 0.016 3.5E-07 47.9 8.7 83 414-515 17-99 (99)
59 PRK02710 plastocyanin; Provisi 95.9 0.03 6.6E-07 48.0 7.2 72 415-515 48-119 (119)
60 PRK02888 nitrous-oxide reducta 95.8 0.034 7.3E-07 60.2 8.6 75 415-516 556-634 (635)
61 COG4454 Uncharacterized copper 95.7 0.082 1.8E-06 46.5 9.2 89 55-147 59-158 (158)
62 TIGR02375 pseudoazurin pseudoa 95.6 0.046 1E-06 46.5 7.0 41 478-522 54-94 (116)
63 TIGR02657 amicyanin amicyanin. 95.4 0.079 1.7E-06 42.2 7.5 71 415-514 12-82 (83)
64 PRK10378 inactive ferrous ion 94.1 0.5 1.1E-05 48.6 11.2 76 56-148 41-118 (375)
65 COG4454 Uncharacterized copper 93.5 0.29 6.3E-06 43.2 7.0 93 416-515 65-157 (158)
66 PF00116 COX2: Cytochrome C ox 93.4 0.48 1E-05 40.6 8.2 74 58-145 45-119 (120)
67 TIGR03102 halo_cynanin halocya 93.1 0.59 1.3E-05 39.7 8.2 73 415-515 43-115 (115)
68 TIGR02695 azurin azurin. Azuri 93.1 0.45 9.7E-06 40.6 7.3 86 58-144 15-124 (125)
69 PF00116 COX2: Cytochrome C ox 93.0 2.1 4.5E-05 36.7 11.6 72 204-294 46-117 (120)
70 COG3794 PetE Plastocyanin [Ene 92.0 0.77 1.7E-05 39.6 7.5 74 415-516 55-128 (128)
71 TIGR02866 CoxB cytochrome c ox 91.3 2.6 5.6E-05 39.7 11.2 77 58-148 116-193 (201)
72 TIGR02866 CoxB cytochrome c ox 88.7 1.5 3.2E-05 41.3 7.2 78 414-519 117-195 (201)
73 PF06525 SoxE: Sulfocyanin (So 88.6 3.2 6.9E-05 38.4 8.9 98 412-517 84-188 (196)
74 COG1622 CyoA Heme/copper-type 87.4 2.5 5.5E-05 41.0 8.0 78 58-149 136-214 (247)
75 PF12690 BsuPI: Intracellular 86.2 8.8 0.00019 30.4 9.1 65 214-279 4-82 (82)
76 TIGR03094 sulfo_cyanin sulfocy 82.4 9.8 0.00021 34.7 8.6 97 413-516 84-186 (195)
77 TIGR02695 azurin azurin. Azuri 79.6 13 0.00027 31.9 8.0 77 204-280 16-111 (125)
78 PF12690 BsuPI: Intracellular 78.2 4.5 9.8E-05 32.0 4.7 57 60-127 17-80 (82)
79 COG1622 CyoA Heme/copper-type 78.2 7.9 0.00017 37.6 7.3 79 413-519 136-215 (247)
80 KOG4063 Major epididymal secre 76.1 21 0.00045 31.5 8.4 60 60-119 49-123 (158)
81 COG4263 NosZ Nitrous oxide red 73.5 5.1 0.00011 41.5 4.8 77 60-146 559-636 (637)
82 TIGR03079 CH4_NH3mon_ox_B meth 72.4 28 0.0006 35.4 9.4 58 55-118 278-352 (399)
83 PF04151 PPC: Bacterial pre-pe 66.1 26 0.00057 26.4 6.4 64 205-280 6-69 (70)
84 TIGR01433 CyoA cytochrome o ub 64.7 13 0.00029 35.6 5.4 77 415-519 140-217 (226)
85 PF14344 DUF4397: Domain of un 64.0 88 0.0019 26.3 11.0 21 215-235 3-24 (122)
86 PRK10378 inactive ferrous ion 61.4 47 0.001 34.4 8.9 85 194-299 33-118 (375)
87 MTH00140 COX2 cytochrome c oxi 61.2 24 0.00051 34.0 6.5 79 413-519 139-218 (228)
88 PF07705 CARDB: CARDB; InterP 60.4 85 0.0018 24.9 9.7 65 207-280 14-82 (101)
89 PF07172 GRP: Glycine rich pro 59.6 4.1 8.8E-05 33.3 0.8 20 1-20 1-20 (95)
90 PF01835 A2M_N: MG2 domain; I 59.3 26 0.00055 28.4 5.6 68 208-281 11-85 (99)
91 PF05506 DUF756: Domain of unk 57.2 77 0.0017 25.2 7.9 64 57-128 7-73 (89)
92 PF05938 Self-incomp_S1: Plant 56.7 28 0.0006 29.0 5.5 70 70-148 2-71 (110)
93 PTZ00047 cytochrome c oxidase 56.6 47 0.001 29.9 7.0 77 415-519 74-151 (162)
94 MTH00129 COX2 cytochrome c oxi 55.6 31 0.00067 33.2 6.2 79 413-519 139-218 (230)
95 PF10633 NPCBM_assoc: NPCBM-as 55.4 69 0.0015 24.7 7.2 65 208-281 1-75 (78)
96 MTH00098 COX2 cytochrome c oxi 54.9 33 0.00072 32.9 6.2 78 414-519 140-218 (227)
97 COG2967 ApaG Uncharacterized p 54.3 15 0.00032 31.0 3.2 65 71-149 34-106 (126)
98 COG3354 FlaG Putative archaeal 51.5 1.7E+02 0.0037 25.7 9.2 82 193-280 51-141 (154)
99 TIGR01432 QOXA cytochrome aa3 50.3 30 0.00065 33.0 5.1 77 415-519 131-208 (217)
100 MTH00047 COX2 cytochrome c oxi 50.2 1.1E+02 0.0025 28.5 8.8 63 204-285 116-178 (194)
101 PF05506 DUF756: Domain of unk 48.8 1.3E+02 0.0029 23.8 8.4 58 212-280 20-77 (89)
102 MTH00047 COX2 cytochrome c oxi 48.3 1.1E+02 0.0023 28.7 8.3 76 415-518 117-193 (194)
103 MTH00185 COX2 cytochrome c oxi 47.5 52 0.0011 31.6 6.3 79 413-519 139-218 (230)
104 MTH00008 COX2 cytochrome c oxi 46.8 50 0.0011 31.7 6.1 79 413-519 139-218 (228)
105 MTH00117 COX2 cytochrome c oxi 44.4 59 0.0013 31.2 6.2 79 413-519 139-218 (227)
106 cd00918 Der-p2_like Several gr 41.0 1.1E+02 0.0023 26.2 6.6 62 58-119 19-88 (120)
107 PF04744 Monooxygenase_B: Mono 40.8 55 0.0012 33.4 5.4 69 45-119 249-334 (381)
108 PRK10894 lipopolysaccharide tr 40.8 50 0.0011 30.4 4.9 39 2-40 1-41 (180)
109 PF07691 PA14: PA14 domain; I 40.7 1.7E+02 0.0038 25.0 8.3 61 205-270 53-120 (145)
110 MTH00076 COX2 cytochrome c oxi 38.4 70 0.0015 30.7 5.7 79 413-519 139-218 (228)
111 MTH00051 COX2 cytochrome c oxi 37.2 87 0.0019 30.2 6.1 79 413-519 143-222 (234)
112 PRK13254 cytochrome c-type bio 36.6 52 0.0011 29.3 4.1 72 24-102 29-103 (148)
113 smart00758 PA14 domain in bact 36.0 2.2E+02 0.0048 24.2 8.1 60 206-270 52-112 (136)
114 MTH00140 COX2 cytochrome c oxi 35.4 1.8E+02 0.0038 27.9 7.9 62 204-284 140-201 (228)
115 COG4633 Plastocyanin domain co 35.0 2E+02 0.0044 27.3 7.7 88 42-150 80-172 (272)
116 TIGR01433 CyoA cytochrome o ub 34.5 1.7E+02 0.0037 28.1 7.6 62 204-284 139-200 (226)
117 PF11142 DUF2917: Protein of u 33.8 1.4E+02 0.0031 22.2 5.5 46 206-263 2-47 (63)
118 PF11614 FixG_C: IG-like fold 33.5 1.2E+02 0.0027 25.4 5.9 48 213-269 34-83 (118)
119 TIGR01432 QOXA cytochrome aa3 33.1 1.8E+02 0.0038 27.7 7.5 62 204-284 130-191 (217)
120 PRK13159 cytochrome c-type bio 32.5 1.1E+02 0.0023 27.5 5.3 77 22-102 27-104 (155)
121 PRK05461 apaG CO2+/MG2+ efflux 32.2 71 0.0015 27.6 4.1 19 97-115 67-85 (127)
122 MTH00154 COX2 cytochrome c oxi 30.6 1.4E+02 0.003 28.6 6.3 78 414-519 140-218 (227)
123 MTH00038 COX2 cytochrome c oxi 30.5 1.3E+02 0.0027 29.0 6.0 79 413-519 139-218 (229)
124 PF14524 Wzt_C: Wzt C-terminal 30.0 1.7E+02 0.0036 24.9 6.4 83 195-281 19-107 (142)
125 MTH00023 COX2 cytochrome c oxi 30.0 1.9E+02 0.0041 28.0 7.2 79 413-519 150-229 (240)
126 PF10989 DUF2808: Protein of u 29.8 59 0.0013 28.8 3.4 26 476-501 99-128 (146)
127 MTH00139 COX2 cytochrome c oxi 29.5 1.5E+02 0.0033 28.4 6.4 79 413-519 139-218 (226)
128 COG1188 Ribosome-associated he 28.3 42 0.00091 27.6 1.9 30 50-79 36-65 (100)
129 PTZ00047 cytochrome c oxidase 27.5 4.7E+02 0.01 23.7 8.8 62 204-284 73-134 (162)
130 cd00916 Npc2_like Niemann-Pick 27.3 2.6E+02 0.0056 23.8 6.8 60 60-119 23-92 (123)
131 KOG1554 COP9 signalosome, subu 26.9 44 0.00096 32.7 2.1 25 124-148 134-173 (347)
132 PF04379 DUF525: Protein of un 26.1 1.3E+02 0.0027 24.3 4.3 49 213-264 15-67 (90)
133 PF10989 DUF2808: Protein of u 25.7 79 0.0017 28.0 3.4 29 103-131 96-127 (146)
134 MTH00027 COX2 cytochrome c oxi 25.2 2E+02 0.0042 28.3 6.3 78 414-519 174-252 (262)
135 MTH00080 COX2 cytochrome c oxi 25.1 1.9E+02 0.0042 27.8 6.2 79 413-519 142-221 (231)
136 PRK05461 apaG CO2+/MG2+ efflux 24.5 1.9E+02 0.0041 25.0 5.4 49 213-264 32-84 (127)
137 PF14392 zf-CCHC_4: Zinc knuck 23.9 1.1E+02 0.0024 21.3 3.3 39 468-506 6-45 (49)
138 PF12988 DUF3872: Domain of un 22.8 45 0.00097 29.0 1.2 14 62-75 43-56 (137)
139 MTH00008 COX2 cytochrome c oxi 22.6 4.2E+02 0.0091 25.4 8.0 61 204-283 140-200 (228)
140 PF10794 DUF2606: Protein of u 22.6 1.7E+02 0.0036 24.8 4.4 35 27-61 40-75 (131)
141 PRK10525 cytochrome o ubiquino 22.3 6.8E+02 0.015 25.4 9.6 74 59-146 151-225 (315)
142 PF14326 DUF4384: Domain of un 21.9 3.9E+02 0.0084 20.8 8.2 24 208-231 3-26 (83)
143 PRK13150 cytochrome c-type bio 21.7 1.5E+02 0.0032 26.8 4.3 85 23-110 28-119 (159)
144 PF04744 Monooxygenase_B: Mono 21.4 68 0.0015 32.8 2.3 53 95-147 71-128 (381)
145 PF03032 Brevenin: Brevenin/es 20.9 51 0.0011 23.0 1.0 14 1-14 3-16 (46)
146 cd08068 MPN_BRCC36 Mov34/MPN/P 20.7 69 0.0015 31.1 2.2 8 125-132 93-100 (244)
147 PRK10525 cytochrome o ubiquino 20.5 3.2E+02 0.007 27.6 6.9 63 204-285 151-213 (315)
148 PRK15188 fimbrial chaperone pr 20.4 5E+02 0.011 24.9 8.0 17 58-74 79-95 (228)
149 KOG4387 Ornithine decarboxylas 20.3 41 0.00089 30.6 0.5 29 61-89 71-99 (191)
150 PF03100 CcmE: CcmE; InterPro 20.1 28 0.0006 30.3 -0.6 70 27-102 31-103 (131)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=7.6e-111 Score=893.69 Aligned_cols=537 Identities=67% Similarity=1.147 Sum_probs=437.9
Q ss_pred CCcchhHHHHHHHHHHHhhh-hcccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCC
Q 009171 1 MKGAIFLEILIGILACLCVF-WVNAEDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDE 79 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~ 79 (541)
|.++.-+-+|++.++.|++. ...+.+++++|+|++++..+++||+++++|+|||++|||+||+++||+|+|+|+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~ 80 (539)
T PLN02835 1 MGSAVNLHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQ 80 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCC
Confidence 56677788899988887765 45556789999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCC
Q 009171 80 PFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPD 159 (541)
Q Consensus 80 ~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~ 159 (541)
+++|||||++|.++++|||+|+.||||+||++|+|+|++++++||||||||...|+++||+|+|||++++..+.+++..|
T Consensus 81 ~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d 160 (539)
T PLN02835 81 PFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPD 160 (539)
T ss_pred CCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCC
Confidence 99999999999999999999989999999999999999877899999999999999999999999987655555666679
Q ss_pred CceEEEEccccccCCCHHHHHHHHhcCCCCCCCCeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEE
Q 009171 160 GEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLV 239 (541)
Q Consensus 160 ~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~vi 239 (541)
+|++++++||+++ ....+...+..+...+.++.+||||+.. +.++|++|++|||||||+|..+.+.|+|+||+|+||
T Consensus 161 ~e~~l~l~Dw~~~--~~~~~~~~~~~g~~~~~~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI 237 (539)
T PLN02835 161 GDFTLLVGDWYKT--SHKTLQQRLDSGKVLPFPDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLV 237 (539)
T ss_pred ceEEEEeeccccC--CHHHHHHHhhcCCCCCCCceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEE
Confidence 9999999999999 4445555555565667889999999999 899999999999999999999999999999999999
Q ss_pred eecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccc
Q 009171 240 EVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSM 319 (541)
Q Consensus 240 a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 319 (541)
|+||++++|..+++|.|++||||||+|++++++|+|||++...+........|||+|+++..+.+.++|..|..+...+.
T Consensus 238 ~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~ 317 (539)
T PLN02835 238 EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSM 317 (539)
T ss_pred EECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccc
Confidence 99999999999999999999999999999988899999987544444567899999988654332233332321111112
Q ss_pred cccccccccCccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCC
Q 009171 320 KQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTI 399 (541)
Q Consensus 320 ~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~ 399 (541)
..+......+.+....+.+...........++++.+.......++...|+|||.+|..|++|+|++.+++.++.|+.+..
T Consensus 318 ~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~ 397 (539)
T PLN02835 318 RQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSI 397 (539)
T ss_pred chhhccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCcc
Confidence 22222222233333333332221111223455555543222235667899999999999999987766666666654432
Q ss_pred CCCCCCCCCCCCceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCC
Q 009171 400 KDTPTPGAPAKLGASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQ 479 (541)
Q Consensus 400 ~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~ 479 (541)
...+. +...+.++.++.++.|++|||+|+|.+...||||||||+||||++|.|.|++.....+|+.||++|||+.|+++
T Consensus 398 ~~~~~-~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~ 476 (539)
T PLN02835 398 QSLPS-GGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPK 476 (539)
T ss_pred ccCCC-CCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCC
Confidence 22221 12245568899999999999999999988999999999999999999999876555688999999999999999
Q ss_pred CEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCccccccCCCCCChhhccCCCCCC
Q 009171 480 SWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALFCGKAKRPQ 541 (541)
Q Consensus 480 g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~~ 541 (541)
||++|||++||||.|+|||||++|+..||+.+|+|.++.+..+++.++|++++.||..++-|
T Consensus 477 gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~~~ 538 (539)
T PLN02835 477 SWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIGRH 538 (539)
T ss_pred CEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCccCC
Confidence 99999999999999999999999999999999999998777777889999999999877643
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=5.1e-109 Score=875.08 Aligned_cols=517 Identities=56% Similarity=1.006 Sum_probs=425.8
Q ss_pred hhcccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCC
Q 009171 20 FWVNAEDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGV 99 (541)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~ 99 (541)
++..+.+++++|+|++++..+++||+++++++|||++|||+|++++||+|+|+|+|+|+++++|||||++|.++++|||+
T Consensus 20 ~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv 99 (543)
T PLN02991 20 SFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGV 99 (543)
T ss_pred hhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCC
Confidence 34555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHH
Q 009171 100 LGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKAL 179 (541)
Q Consensus 100 ~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~ 179 (541)
++.||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++.++.|+...++|++++|+||+++ ....+
T Consensus 100 ~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~--~~~~~ 177 (543)
T PLN02991 100 YGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKT--NHKDL 177 (543)
T ss_pred CCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecC--CHHHH
Confidence 9889999999999999998678999999999999999999999999997666666656688999999999998 45555
Q ss_pred HHHHhcCCCCCCCCeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCC
Q 009171 180 QKRLEDGYSLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVG 259 (541)
Q Consensus 180 ~~~~~~~~~~~~~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pg 259 (541)
...+..+...+.++.+||||+...+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..++++.|++|
T Consensus 178 ~~~~~~~~~~~~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~G 257 (543)
T PLN02991 178 RAQLDNGGKLPLPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVG 257 (543)
T ss_pred HHHhhcCCCCCCCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEEcCC
Confidence 44444555566889999999986588999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCC
Q 009171 260 QSVAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQ 339 (541)
Q Consensus 260 eR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~ 339 (541)
|||||+|++++++|+|||++...+........|||+|+++..+.+.+.|..|. ...++.++....+..+.+....+.|.
T Consensus 258 QRydvlv~a~~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~-~~~~~~~~~~~~~~~l~p~~~~~~p~ 336 (543)
T PLN02991 258 QSYSVLITADQPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPI-QLSWSFDQARAIKTNLTASGPRPNPQ 336 (543)
T ss_pred cEEEEEEECCCCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCc-cccccccchhhhhhcccCCCCCCCCC
Confidence 99999999999899999999875444556789999999875422222333221 11122222211222344332333333
Q ss_pred CCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecC
Q 009171 340 GSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTT 419 (541)
Q Consensus 340 ~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 419 (541)
..........++++.+.......++...|+|||.+|..|++|+|++.+++++++|+.+...+.|. +......+.++.++
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~v~~~~ 415 (543)
T PLN02991 337 GSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPT-NGAIFPVTSVMQTD 415 (543)
T ss_pred ccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCC-CCccccCCcEEEcC
Confidence 32222223344555444322222456789999999999999999877777778877653333232 12234567788999
Q ss_pred CCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeec
Q 009171 420 LHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSA 499 (541)
Q Consensus 420 ~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCH 499 (541)
.+++|||+|+|.....||||||||+||||++|.|.|++.....||+.||++|||+.||++||++|||++||||+|+||||
T Consensus 416 ~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCH 495 (543)
T PLN02991 416 YKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSE 495 (543)
T ss_pred CCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeC
Confidence 99999999999988899999999999999999999987766679999999999999999999999999999999999999
Q ss_pred hhhHhhcccEEEEEEecCCccccccCCCCCChhhccCCCCC
Q 009171 500 IWERRYLGQELYLRVSNDERSLFTETDVPPNALFCGKAKRP 540 (541)
Q Consensus 500 il~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (541)
|..|+..||.++++|.++.+..+++.+||.++++||.-++-
T Consensus 496 i~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~~ 536 (543)
T PLN02991 496 LWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATGH 536 (543)
T ss_pred ccccccccEEEEEEecCCCCccccccCCCcccCccccCCCC
Confidence 99999999999999999988887889999999999876653
No 3
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=1.4e-108 Score=877.36 Aligned_cols=515 Identities=57% Similarity=1.023 Sum_probs=418.1
Q ss_pred ccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC
Q 009171 23 NAEDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT 102 (541)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~ 102 (541)
.+.+++++|+|++++..+++||+++++++|||++|||+||+++||+|+|+|+|+|+++++|||||++|.+++++||+|+.
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~T 101 (552)
T PLN02354 22 RAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGT 101 (552)
T ss_pred hccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCC
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHH
Q 009171 103 NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKR 182 (541)
Q Consensus 103 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (541)
||||+||++|+|+|++.+++||||||||...|+++||+|+|||++++..+.+|+..++|++|+|+||+++ ....+..+
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~--~~~~~~~~ 179 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTK--SHTALKKF 179 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccC--CHHHHHHH
Confidence 9999999999999997678999999999999999999999999998666667766678999999999998 55556655
Q ss_pred HhcCCCCCCCCeEEEcCCCC------CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEE
Q 009171 183 LEDGYSLPVPDALLINGHHN------SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDI 256 (541)
Q Consensus 183 ~~~~~~~~~~~~~lvNG~~~------~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l 256 (541)
+..+...+.++.+||||+.. .+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|
T Consensus 180 ~~~g~~~~~~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i 259 (552)
T PLN02354 180 LDSGRTLGRPDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSLDV 259 (552)
T ss_pred HhcCCCCCCCCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEEEE
Confidence 55555556789999999962 378999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCC
Q 009171 257 HVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARP 336 (541)
Q Consensus 257 ~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p 336 (541)
++||||||+|++++++|+|||++...+........|||+|+++..+.+.+.|..+. +..++...+..++.++.+....+
T Consensus 260 ~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~l~~~~~~p 338 (552)
T PLN02354 260 HVGQCFSVLVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPV-GWAWSLNQFRSFRWNLTASAARP 338 (552)
T ss_pred ccCceEEEEEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCc-ccccchhhhhhhhhcccccccCC
Confidence 99999999999998889999999865445567789999999875433222332221 11112222223322333322222
Q ss_pred CCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCC-cccccCCCCC-CCCCCCCCCCcee
Q 009171 337 NPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIP-GVFDLNTIKD-TPTPGAPAKLGAS 414 (541)
Q Consensus 337 ~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~-~~~~~~~~~~-~p~~~~~~~~~~~ 414 (541)
.+...........++++.+.......++...|+|||.+|..|++|+|++.++++. +.+..+...+ .|........++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~ 418 (552)
T PLN02354 339 NPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPN 418 (552)
T ss_pred CCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCe
Confidence 2222111112334555555443222345678999999999999999876554433 4443221111 1110112345678
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
++.++.|++|||+|+|.+...||||||||+||||++|.|.|+++....+|+.||++|||+.||++||++|||++||||+|
T Consensus 419 v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW 498 (552)
T PLN02354 419 VLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMW 498 (552)
T ss_pred eEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEE
Confidence 89999999999999999888999999999999999999999876666799999999999999999999999999999999
Q ss_pred EEeechhhHhhcccEEEEEEecCCccccccCCCCCChhhccCCCCC
Q 009171 495 NLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALFCGKAKRP 540 (541)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (541)
+|||||..|+++||++.+.|.++.+.++++.++|++.+.|++.++.
T Consensus 499 ~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~ 544 (552)
T PLN02354 499 NIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGL 544 (552)
T ss_pred eeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccCC
Confidence 9999999999999999999999887776677899999999988764
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=7.2e-108 Score=870.59 Aligned_cols=533 Identities=50% Similarity=0.861 Sum_probs=428.7
Q ss_pred hhHHHHHHHHHHHhhhhcccCCCeEEEEEEEEEEEeCCCC--eeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCee
Q 009171 5 IFLEILIGILACLCVFWVNAEDPYRSYTWTVTYGTISPFG--VPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFL 82 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g--~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~ 82 (541)
+|.-+|++.+|.|+-..+.|.+++++|+|++++..+.+|| ..+++++|||++|||+||+++||+|+|+|+|+|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~tt 83 (596)
T PLN00044 4 ILFLLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLL 83 (596)
T ss_pred HHHHHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCcc
Confidence 3344555566666666667788999999999999999998 55689999999999999999999999999999999999
Q ss_pred EeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCC-Cc
Q 009171 83 ITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPD-GE 161 (541)
Q Consensus 83 iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~-~e 161 (541)
|||||++|..++++||+++.||||+||++|+|+|++++++||||||||...|+++||+|+|||++++..+.||...+ +|
T Consensus 84 IHWHGl~q~~t~w~DGv~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e 163 (596)
T PLN00044 84 LTWHGVQQRKSAWQDGVGGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGD 163 (596)
T ss_pred EEECCccCCCCccccCCCCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccc
Confidence 99999999999999999878999999999999999877899999999999999999999999999866566664434 79
Q ss_pred eEEEEccccccCCCHHHHHHHHhcCCCCCCCCeEEEcCCCCC-------------ccEEEecCCEEEEEEEEcCCCCeEE
Q 009171 162 FTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNS-------------LSFTGQKGKTYKFRVSNVGIATSIN 228 (541)
Q Consensus 162 ~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~lvNG~~~~-------------p~l~v~~G~~~rlRliNa~~~~~~~ 228 (541)
.+|+|+||+++ ....+...+..+.....++.++|||++.. +.++|++|++|||||||++..+.+.
T Consensus 164 ~~i~l~DW~~~--~~~~~~~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~ 241 (596)
T PLN00044 164 ITLFIADWYAR--DHRALRRALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLN 241 (596)
T ss_pred eEEEecccccC--CHHHHHHHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEE
Confidence 99999999998 45555555555544567899999998531 3799999999999999999999999
Q ss_pred EEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCc-eeEEEEecccc----CCCcceEEEEEecCCCCCC
Q 009171 229 FRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPK-DYYIVASTRFT----KPILTTTAILHYDGSNTPP 303 (541)
Q Consensus 229 ~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g-~~~i~~~~~~~----~~~~~~~ail~y~~~~~~~ 303 (541)
|+|+||+|+|||+||.+++|+.+++|.|++||||||+|+++++++ +|||++..... .++..+.|||+|+++....
T Consensus 242 fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~ 321 (596)
T PLN00044 242 FRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPA 321 (596)
T ss_pred EEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999998765 89999864311 2456788999999865422
Q ss_pred CCCCCCCC--CCcccccccccccccccCccCCCCCCCCCCCcccccceeeEEEEecc-ccccCCEEEEEEcCeeeeCCCC
Q 009171 304 SLPLPIAP--TYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANS-ATKINNKLRYAVNGISYVNPIT 380 (541)
Q Consensus 304 ~~~~p~~p--~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~-~~~~~g~~~~~iNg~~f~~~~~ 380 (541)
..++|..| ..+..++.++...++.........+.|.....+....+.+.+.+... .....++..|+|||.+|..|++
T Consensus 322 ~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~ 401 (596)
T PLN00044 322 SGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPST 401 (596)
T ss_pred CCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCC
Confidence 22234323 22332222233333322222222233332221212222333322211 1112356889999999999999
Q ss_pred ccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCcccc
Q 009171 381 PLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIR 460 (541)
Q Consensus 381 P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~ 460 (541)
|+|++.+++++++|+.+++...|. .....++.++.++.+++|||+|+|.....||||||||+|+||++|.|.|+++..
T Consensus 402 p~L~a~~~~~~gv~~~~fp~~pp~--~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~ 479 (596)
T PLN00044 402 PLMLAQIFNVPGVFKLDFPNHPMN--RLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYGLWTDNSR 479 (596)
T ss_pred cchhhhhccCCCcccCCCCCCCCc--cccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCCCCCCCcc
Confidence 999888878888887775444342 223457889999999999999999877899999999999999999999998777
Q ss_pred ccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCcc-ccccCCCCCChhhccCCCC
Q 009171 461 KRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERS-LFTETDVPPNALFCGKAKR 539 (541)
Q Consensus 461 ~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~-~~~~~~~p~~~~~c~~~~~ 539 (541)
..||+.||++|||+.|+++||++|||++||||+|+|||||+.|++.||++.|.|.++.+. .+++.+||++++.||..++
T Consensus 480 ~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~ 559 (596)
T PLN00044 480 GTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSS 559 (596)
T ss_pred cccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCccccccc
Confidence 789999999999999999999999999999999999999999999999999999998865 5678899999999987765
Q ss_pred CC
Q 009171 540 PQ 541 (541)
Q Consensus 540 ~~ 541 (541)
.|
T Consensus 560 ~~ 561 (596)
T PLN00044 560 LQ 561 (596)
T ss_pred CC
Confidence 43
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.7e-107 Score=864.90 Aligned_cols=513 Identities=51% Similarity=0.946 Sum_probs=422.6
Q ss_pred CCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCC
Q 009171 25 EDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNC 104 (541)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~ 104 (541)
.+++++|+|++++..+++||+.+++++|||++|||+||+++||+|+|+|+|+|+++++|||||++|.+++|+||+++.||
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqc 92 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTC 92 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcC
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred ccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHh
Q 009171 105 PIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLE 184 (541)
Q Consensus 105 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 184 (541)
||+||++|+|+|++++++||||||||...|+.+||+|+|||++++..+.+++..++|++++|+||+++ ....+...+.
T Consensus 93 PI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~--~~~~~~~~~~ 170 (536)
T PLN02792 93 PIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRR--NHTTLKKILD 170 (536)
T ss_pred ccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccC--CHHHHHHHhh
Confidence 99999999999998778999999999999999999999999886555556666688999999999998 4555555555
Q ss_pred cCCCCC-CCCeEEEcCCCC--CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCce
Q 009171 185 DGYSLP-VPDALLINGHHN--SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQS 261 (541)
Q Consensus 185 ~~~~~~-~~~~~lvNG~~~--~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR 261 (541)
.+...+ .++.+||||++. .+.++|++||+|||||||+|..+.+.|+|+||+|+|||+||++++|..+++|.|+||||
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqR 250 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQT 250 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEEEEccCce
Confidence 554333 789999999973 26799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCC-CCcccccccccccccccCccCCCCCCCCC
Q 009171 262 VAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAP-TYHIHWSMKQARTIRTNLTANAARPNPQG 340 (541)
Q Consensus 262 ~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~~~~~~p~p~~ 340 (541)
|||+|++++++|+|+|++...+.+.+....|||+|+++....+ ..|..| ..+..++......++..+.+..+.+.|..
T Consensus 251 ydVlV~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~ 329 (536)
T PLN02792 251 YSVLVTMDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQG 329 (536)
T ss_pred EEEEEEcCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhhhhhccCCCCCCCCCCc
Confidence 9999999988899999998754445567899999998654211 112222 22233332222223333433223334443
Q ss_pred CCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCC
Q 009171 341 SFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTL 420 (541)
Q Consensus 341 ~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 420 (541)
...+....+++++.+.......++...|+|||.+|..|++|+|++.++++.++++.+..++.|...+....++.++.++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~ 409 (536)
T PLN02792 330 SYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHH 409 (536)
T ss_pred ccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCC
Confidence 33222334456655544322234567899999999999999998877777777765433333321222344688999999
Q ss_pred CcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeech
Q 009171 421 HDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAI 500 (541)
Q Consensus 421 g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHi 500 (541)
|++|||+|+|.....||||||||+||||++|.|.|++.....||+.||++|||+.|+++||++|||++||||+|+||||+
T Consensus 410 ~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~ 489 (536)
T PLN02792 410 NAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQF 489 (536)
T ss_pred CCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcc
Confidence 99999999998888999999999999999999999987667899999999999999999999999999999999999999
Q ss_pred hhHhhcccEEEEEEecCCccccccCCCCCChhhccCCCCC
Q 009171 501 WERRYLGQELYLRVSNDERSLFTETDVPPNALFCGKAKRP 540 (541)
Q Consensus 501 l~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (541)
..|+..||+++|.|.++.+..+++.+||++.+.||..++.
T Consensus 490 ~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~~ 529 (536)
T PLN02792 490 WARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASNK 529 (536)
T ss_pred hhccccceEEEEEEccCCCccccccCCCcccCccccccCC
Confidence 9999999999999999888777889999999999977653
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.3e-106 Score=858.55 Aligned_cols=509 Identities=47% Similarity=0.852 Sum_probs=403.8
Q ss_pred CCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCc
Q 009171 26 DPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCP 105 (541)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~ 105 (541)
+++++|+|++++..+.+||+.+++++|||++|||+||+++||+|+|+|+|+|+++++|||||++|.++++|||+|+.|||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcp 103 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCP 103 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred cCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHhc
Q 009171 106 IPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLED 185 (541)
Q Consensus 106 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~ 185 (541)
|+||++|+|+|++++++||||||||.+.|+++||+|+|||++++..+.+++..++|++|+|+||++. ....+...+..
T Consensus 104 I~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~--~~~~~~~~~~~ 181 (545)
T PLN02168 104 ILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYA--DHTVMRASLDN 181 (545)
T ss_pred CCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCC--CHHHHHhhhhc
Confidence 9999999999998668999999999999999999999999997765556656689999999999998 44444433334
Q ss_pred CCCCCCCCeEEEcCCCC-CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEE
Q 009171 186 GYSLPVPDALLINGHHN-SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAV 264 (541)
Q Consensus 186 ~~~~~~~~~~lvNG~~~-~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv 264 (541)
+...+.++.+||||++. .+.++|++|++|||||||+|..+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||
T Consensus 182 g~~~~~~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydv 261 (545)
T PLN02168 182 GHSLPNPDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSV 261 (545)
T ss_pred CCCCCCCCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEE
Confidence 43445789999999972 37899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCC-c---eeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCC-CcccccccccccccccCccCCCCCCCC
Q 009171 265 VVAMHGPP-K---DYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPT-YHIHWSMKQARTIRTNLTANAARPNPQ 339 (541)
Q Consensus 265 ~v~~~~~~-g---~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~ 339 (541)
+|++++++ | +|||++..........+.|||+|+++......++|..|. .+...+.+....++..+.+....+.|.
T Consensus 262 lv~a~~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~ 341 (545)
T PLN02168 262 LVTAKTDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQ 341 (545)
T ss_pred EEEcCCCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCc
Confidence 99998644 3 899999875555567789999998864422122333221 112111122222222233322223332
Q ss_pred CCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecC
Q 009171 340 GSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTT 419 (541)
Q Consensus 340 ~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 419 (541)
..+......+++++.+.......++...|+|||.+|..|++|+|++.++++++.+..+..+..|. +.....++.++.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~v~~~~ 420 (545)
T PLN02168 342 GSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPS-NKTPTLGTSVVDIH 420 (545)
T ss_pred ccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCC-cCccccCceEEEec
Confidence 22211123344555443321112456789999999999999988766555443333331111111 11122357889999
Q ss_pred CCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeec
Q 009171 420 LHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSA 499 (541)
Q Consensus 420 ~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCH 499 (541)
.|++|||+|+|.....||||||||+||||++|.|.|++.....+|+.||++|||+.|+++||++|||++||||.|+||||
T Consensus 421 ~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCH 500 (545)
T PLN02168 421 YKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQ 500 (545)
T ss_pred CCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeec
Confidence 99999999999988899999999999999999999997666679999999999999999999999999999999999999
Q ss_pred hhhHhhcccEEEEEEe-----cCCcc-ccccCCCCCChhhccCC
Q 009171 500 IWERRYLGQELYLRVS-----NDERS-LFTETDVPPNALFCGKA 537 (541)
Q Consensus 500 il~H~d~GMm~~~~V~-----~~~~~-~~~~~~~p~~~~~c~~~ 537 (541)
|..|++.||++.++|. +|++. .+++.++|++.++||..
T Consensus 501 i~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~~ 544 (545)
T PLN02168 501 KAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGKV 544 (545)
T ss_pred CcccceecCcEEEEEEcccccCccccccccccCCChhhcccccC
Confidence 9999999999999885 33332 33466899999999853
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-99 Score=798.59 Aligned_cols=521 Identities=47% Similarity=0.774 Sum_probs=453.4
Q ss_pred hhhhcccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCC
Q 009171 18 CVFWVNAEDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQD 97 (541)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D 97 (541)
..++..|.++.+.|+|+++...+.++|.+++++++||++|||+|+|++||+|.|+|.|+++++++|||||++|..++|+|
T Consensus 18 ~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~D 97 (563)
T KOG1263|consen 18 LVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQD 97 (563)
T ss_pred HHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCcccc
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCH
Q 009171 98 GVLGT-NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSH 176 (541)
Q Consensus 98 G~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~ 176 (541)
| +.+ ||||+||++|+|+|++++|.||||||+|...|+++|++|+|||.++...+.|++.+++|++|+++||+.+. ..
T Consensus 98 G-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~-~~ 175 (563)
T KOG1263|consen 98 G-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNL-NH 175 (563)
T ss_pred C-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeecccc-CH
Confidence 9 555 99999999999999998899999999999999999999999999998777888888999999999999953 57
Q ss_pred HHHHHHHhcCCCCCC-CCeEEEcCCCCC-----ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceee
Q 009171 177 KALQKRLEDGYSLPV-PDALLINGHHNS-----LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQES 250 (541)
Q Consensus 177 ~~~~~~~~~~~~~~~-~~~~lvNG~~~~-----p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~ 250 (541)
..+...++.+...+. +|..+|||+... +.++|++||+|||||+|+|....+.|+|++|+|+||++||.+++|..
T Consensus 176 ~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~ 255 (563)
T KOG1263|consen 176 KNLKNFLDRTGALPNPSDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFT 255 (563)
T ss_pred HHHHHhhccCCCCCCCCCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeee
Confidence 777777776655444 899999999841 58999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCceEEEEEEeCCCCceeEEEEeccccCC----CcceEEEEEecCCCCCCCCCCC---C-CCCCccccccccc
Q 009171 251 YESIDIHVGQSVAVVVAMHGPPKDYYIVASTRFTKP----ILTTTAILHYDGSNTPPSLPLP---I-APTYHIHWSMKQA 322 (541)
Q Consensus 251 ~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~----~~~~~ail~y~~~~~~~~~~~p---~-~p~~~~~~~~~~~ 322 (541)
+++|.|.||||+||+|++++.+++|+|.+.+.+... .....++++|.++..+.+...| . .+..+..++..+.
T Consensus 256 ~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 335 (563)
T KOG1263|consen 256 TDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQA 335 (563)
T ss_pred eceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhh
Confidence 999999999999999999999999999999887765 7789999999985443322222 2 2234556677777
Q ss_pred ccccccCccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCC-cccccCCCCC
Q 009171 323 RTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIP-GVFDLNTIKD 401 (541)
Q Consensus 323 ~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~-~~~~~~~~~~ 401 (541)
+.++..+....+.++|.+.+........+.+.+..+....+++..++||+.+|..|++|.+++.++... +.+..++++.
T Consensus 336 ~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~ 415 (563)
T KOG1263|consen 336 RSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDK 415 (563)
T ss_pred hcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCC
Confidence 778877777777888888776666666677776654434577889999999999999998888766544 4455445444
Q ss_pred CCCC-C-CCCCCceeEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEEecccccCc--cccccCcCCCCCccceE
Q 009171 402 TPTP-G-APAKLGASVIPTTLHDYVEIVFQNNE---TSVQSWHLDGSSFYVVGYGSGTWTA--DIRKRYNLNDAITRHTV 474 (541)
Q Consensus 402 ~p~~-~-~~~~~~~~~~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~--~~~~~~~~~~p~~rDTv 474 (541)
.+.. + ...+.+++++.++.++.|||+++|.+ ...|||||||++|+||++|.|.|++ +....||+.+|..||||
T Consensus 416 P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv 495 (563)
T KOG1263|consen 416 PPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTV 495 (563)
T ss_pred CccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceE
Confidence 4321 1 12478999999999999999999987 5679999999999999999999998 44467999999999999
Q ss_pred EeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCccccccCCCCCChhhccCCCCC
Q 009171 475 QVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALFCGKAKRP 540 (541)
Q Consensus 475 ~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~~~~~~ 540 (541)
.|+||||++|||.+||||+|+||||+.+|...||++.|+|.++++.+.++.++|.+.++||..++.
T Consensus 496 ~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~~ 561 (563)
T KOG1263|consen 496 QVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASGI 561 (563)
T ss_pred EeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCCc
Confidence 999999999999999999999999999999999999999999999888899999999999998765
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.1e-99 Score=813.29 Aligned_cols=498 Identities=28% Similarity=0.483 Sum_probs=386.3
Q ss_pred CCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC-CC
Q 009171 26 DPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT-NC 104 (541)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~ 104 (541)
+++|+|+|++++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|.+++++||+|++ ||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred ccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHh
Q 009171 105 PIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLE 184 (541)
Q Consensus 105 ~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 184 (541)
+|+||++|+|+|++++++||||||||.+.|. +||+|+|||++++..+.+++..|+|++|+|+||+++. ....+.....
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~-~~~~~~~~~~ 158 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNAD-VEAVINQANQ 158 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCC-HHHHHHHHHh
Confidence 9999999999999866899999999998665 5899999999976656666667899999999999983 3333444444
Q ss_pred cCCCCCCCCeEEEcCCCC---------CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEE
Q 009171 185 DGYSLPVPDALLINGHHN---------SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESID 255 (541)
Q Consensus 185 ~~~~~~~~~~~lvNG~~~---------~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~ 255 (541)
.+.....++.+||||+.. .+.++|++|++|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.
T Consensus 159 ~~~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~ 238 (539)
T TIGR03389 159 TGGAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIV 238 (539)
T ss_pred cCCCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEE
Confidence 454455779999999963 14799999999999999999999999999999999999999999999999999
Q ss_pred EcCCceEEEEEEeCCCCceeEEEEeccccC----CCcceEEEEEecCCCCCCCCCCCCCC-CCcccccccccccccccCc
Q 009171 256 IHVGQSVAVVVAMHGPPKDYYIVASTRFTK----PILTTTAILHYDGSNTPPSLPLPIAP-TYHIHWSMKQARTIRTNLT 330 (541)
Q Consensus 256 l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~----~~~~~~ail~y~~~~~~~~~~~p~~p-~~~~~~~~~~~~~l~~~l~ 330 (541)
|++||||||+|++++++|+|||++....++ ......|||+|+++.....+..+..+ .............+. .+.
T Consensus 239 i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~-~~~ 317 (539)
T TIGR03389 239 IGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLR-SLN 317 (539)
T ss_pred ecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcc-ccc
Confidence 999999999999998789999999865332 23568999999886542211111111 111000000000111 111
Q ss_pred -cCCCCCCCCCCCcccccceeeEEEEeccc-----------cccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCC
Q 009171 331 -ANAARPNPQGSFHYGTIKVVRTIVLANSA-----------TKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNT 398 (541)
Q Consensus 331 -~~~~~p~p~~~~~~~~~~~~r~~~l~~~~-----------~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~ 398 (541)
+..+...| ..+++++.+.... ........|+|||++|..|.+|+|.+...++.+.+..+.
T Consensus 318 ~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~ 389 (539)
T TIGR03389 318 SAQYPANVP--------VTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDF 389 (539)
T ss_pred ccCCCCCCC--------CCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCC
Confidence 10000111 1123332222110 001234679999999998899987655444333332221
Q ss_pred CCCCCCC----------CCCCCCceeEEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEEecccccCccc-cccCc
Q 009171 399 IKDTPTP----------GAPAKLGASVIPTTLHDYVEIVFQNNE---TSVQSWHLDGSSFYVVGYGSGTWTADI-RKRYN 464 (541)
Q Consensus 399 ~~~~p~~----------~~~~~~~~~~~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~ 464 (541)
....|.. +-..+.+++++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+... ...+|
T Consensus 390 ~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~n 469 (539)
T TIGR03389 390 PANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFN 469 (539)
T ss_pred ccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccc
Confidence 1111100 001233677899999999999999985 448999999999999999999887542 23689
Q ss_pred CCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCccccccCCCCCChhhc
Q 009171 465 LNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALFC 534 (541)
Q Consensus 465 ~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c 534 (541)
+.||++|||+.|+++||++|||++||||.|+|||||++|+..||+++|.+.+.++..+++.++|+++++|
T Consensus 470 l~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 470 LVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999877665556688999999999
No 9
>PLN02604 oxidoreductase
Probab=100.00 E-value=1.2e-95 Score=785.52 Aligned_cols=513 Identities=29% Similarity=0.504 Sum_probs=389.6
Q ss_pred HHHHHHHHHHhhhhcccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECC-CCCeeEeeC
Q 009171 8 EILIGILACLCVFWVNAEDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKL-DEPFLITWN 86 (541)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l-~~~~~iH~H 86 (541)
.+.+++.+++-+....+.+++++|+|++++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|++ .++++||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~H 83 (566)
T PLN02604 4 FLALFFLLFSVLNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWH 83 (566)
T ss_pred hhhHHHHHHHHHHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeC
Confidence 3444444444444667778999999999999999999999999999999999999999999999999998 689999999
Q ss_pred CcCCCCCCCCCCCCCC-CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEE
Q 009171 87 GVKQRRTTWQDGVLGT-NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLL 165 (541)
Q Consensus 87 G~~~~~~~~~DG~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 165 (541)
|+++.+++++||++++ ||+|+||++++|+|++ +++||||||||...|+.+||+|+|||++++..+.++ ..|.|.+|+
T Consensus 84 G~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~ 161 (566)
T PLN02604 84 GIRQIGTPWFDGTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSII 161 (566)
T ss_pred CCCCCCCccccCCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEE
Confidence 9999888999999998 9999999999999997 689999999999999999999999999876444455 348899999
Q ss_pred EccccccCCCHHHHHHHHhc--CCCCCCCCeEEEcCCCC------------------------CccEEEecCCEEEEEEE
Q 009171 166 VSDWFKNFSSHKALQKRLED--GYSLPVPDALLINGHHN------------------------SLSFTGQKGKTYKFRVS 219 (541)
Q Consensus 166 l~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~lvNG~~~------------------------~p~l~v~~G~~~rlRli 219 (541)
|+||+++. .......... ......++..+|||++. .+.++|++|++||||||
T Consensus 162 l~Dw~~~~--~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlI 239 (566)
T PLN02604 162 LTDWYHKS--TYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRIS 239 (566)
T ss_pred eeccccCC--HHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEE
Confidence 99999983 3222221111 11224678999999742 13689999999999999
Q ss_pred EcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCc-eeEEEEeccccC-CCcceEEEEEec
Q 009171 220 NVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPK-DYYIVASTRFTK-PILTTTAILHYD 297 (541)
Q Consensus 220 Na~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g-~~~i~~~~~~~~-~~~~~~ail~y~ 297 (541)
|+|+.+.+.|+|++|+|+|||+||.+++|++++.|.|++||||||+|++++++| +|||++...... +...+.|||+|+
T Consensus 240 Na~~~~~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~ 319 (566)
T PLN02604 240 SLTALSALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYY 319 (566)
T ss_pred eccccceEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEEC
Confidence 999999999999999999999999999999999999999999999999998765 899998754332 346789999998
Q ss_pred CCCCCCCC--CCCCCCC-CcccccccccccccccCccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCee
Q 009171 298 GSNTPPSL--PLPIAPT-YHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGIS 374 (541)
Q Consensus 298 ~~~~~~~~--~~p~~p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~ 374 (541)
+....... ..+..+. .+..........+.. +... ... .....++++.+.......++...|.|||.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~--------~~~~~d~~~~~~~~~~~~~~~~~w~in~~~ 389 (566)
T PLN02604 320 PNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKA-RHGY-IHP--------PPLTSDRVIVLLNTQNEVNGYRRWSVNNVS 389 (566)
T ss_pred CCCCCCCCCCCCCCCCcccccchhhcchhcccc-cccC-cCC--------CCCCCCeEEEEeccccccCCeEEEEECccc
Confidence 64321111 1111110 000000000000000 0000 000 011235555543322222456789999999
Q ss_pred eeCCCCccccccccCCCcccccCCCCCC----------CCCCCCCCCceeEEecCCCcEEEEEEEcCC------CCCCce
Q 009171 375 YVNPITPLKLADWFNIPGVFDLNTIKDT----------PTPGAPAKLGASVIPTTLHDYVEIVFQNNE------TSVQSW 438 (541)
Q Consensus 375 f~~~~~P~l~~~~~~~~~~~~~~~~~~~----------p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~------~~~HP~ 438 (541)
|..+.+|+|++......++|+.+..... ...+...+.+..++.++.|++||++|+|.. ...|||
T Consensus 390 ~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~ 469 (566)
T PLN02604 390 FNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPW 469 (566)
T ss_pred CCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCE
Confidence 9988899877655444444432211100 000112344677899999999999999985 457999
Q ss_pred eecCCceEEEEecccccCccc-cccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecC
Q 009171 439 HLDGSSFYVVGYGSGTWTADI-RKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSND 517 (541)
Q Consensus 439 HlHG~~F~Vl~~g~g~~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~ 517 (541)
|||||+||||++|.|.|++.. ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|...||+++|... +
T Consensus 470 HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-~ 548 (566)
T PLN02604 470 HLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-I 548 (566)
T ss_pred EecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-h
Confidence 999999999999999887543 34689999999999999999999999999999999999999999999999999653 3
Q ss_pred CccccccCCCCCChhhccCCCC
Q 009171 518 ERSLFTETDVPPNALFCGKAKR 539 (541)
Q Consensus 518 ~~~~~~~~~~p~~~~~c~~~~~ 539 (541)
+ ++.++|.++++|+.-+|
T Consensus 549 ~----~~~~~p~~~~~C~~~~~ 566 (566)
T PLN02604 549 E----RVGKLPSSIMGCGESKG 566 (566)
T ss_pred h----hccCCCCCcCccccCCC
Confidence 3 36678999999986654
No 10
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=7.8e-96 Score=785.10 Aligned_cols=496 Identities=30% Similarity=0.537 Sum_probs=376.7
Q ss_pred CCCeEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCC-CCeeEeeCCcCCCCCCCCCCCCCC-
Q 009171 25 EDPYRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITWNGVKQRRTTWQDGVLGT- 102 (541)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~- 102 (541)
.+++++|+|++++..+.+||+++++++|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++.+++++||+|++
T Consensus 20 ~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvt 99 (574)
T PLN02191 20 SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVT 99 (574)
T ss_pred ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccc
Confidence 468899999999999999999999999999999999999999999999999997 789999999999999999999999
Q ss_pred CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHH
Q 009171 103 NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKR 182 (541)
Q Consensus 103 q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (541)
||||+||++|+|+|++ +++||||||||...|+++||+|+|||+++.....++ ..|+|++|+|+||+++. ........
T Consensus 100 q~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~-~~~~~~~~ 176 (574)
T PLN02191 100 QCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNLLLSDWWHES-IPSQELGL 176 (574)
T ss_pred cCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEEeeeccccCC-hHHHHHhh
Confidence 9999999999999997 689999999999999999999999998754322232 23899999999999983 12221111
Q ss_pred Hh-cCCCCCCCCeEEEcCCCCC--------------------------c-cEEEecCCEEEEEEEEcCCCCeEEEEEcCc
Q 009171 183 LE-DGYSLPVPDALLINGHHNS--------------------------L-SFTGQKGKTYKFRVSNVGIATSINFRIQGH 234 (541)
Q Consensus 183 ~~-~~~~~~~~~~~lvNG~~~~--------------------------p-~l~v~~G~~~rlRliNa~~~~~~~~~i~~h 234 (541)
.. .......++.+||||++.. | .++|++|++|||||||+|+.+.+.|+|++|
T Consensus 177 ~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH 256 (574)
T PLN02191 177 SSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGH 256 (574)
T ss_pred ccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCC
Confidence 11 1112245788899987521 2 589999999999999999999999999999
Q ss_pred eeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCC-ceeEEEEeccccCC-CcceEEEEEecCCCCCCCC--CCCCC
Q 009171 235 TLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPP-KDYYIVASTRFTKP-ILTTTAILHYDGSNTPPSL--PLPIA 310 (541)
Q Consensus 235 ~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~~~~-~~~~~ail~y~~~~~~~~~--~~p~~ 310 (541)
+|+|||+||.+++|+++++|.|++||||||+|++++++ ++||||+....... .....|||+|.+......+ +.|..
T Consensus 257 ~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~ 336 (574)
T PLN02191 257 KLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVT 336 (574)
T ss_pred eEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999866 58999997543221 2345799999876542111 11111
Q ss_pred CC-CcccccccccccccccCccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccC
Q 009171 311 PT-YHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFN 389 (541)
Q Consensus 311 p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~ 389 (541)
|. .+.. ........+......+.+.. ...++++.+.... ...+..+|+|||.+|..|.+|+|++.+.+
T Consensus 337 p~~~~~~----~~~~~~~~~~~~~~~~~~p~------~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~P~L~~~~~~ 405 (574)
T PLN02191 337 PRWDDFE----RSKNFSKKIFSAMGSPSPPK------KYRKRLILLNTQN-LIDGYTKWAINNVSLVTPATPYLGSVKYN 405 (574)
T ss_pred Ccccccc----hhhcccccccccccCCCCCC------cccceEEEecccc-eeCCeEEEEECcccCcCCCcchHHHHhhc
Confidence 11 1110 00111111110000011110 1123444443211 12345689999999998999988776554
Q ss_pred CCcccccCCCCC---------CCCCCCCCCCceeEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEEecccc
Q 009171 390 IPGVFDLNTIKD---------TPTPGAPAKLGASVIPTTLHDYVEIVFQNNE------TSVQSWHLDGSSFYVVGYGSGT 454 (541)
Q Consensus 390 ~~~~~~~~~~~~---------~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~------~~~HP~HlHG~~F~Vl~~g~g~ 454 (541)
..+.++.+.+.. .+......+.++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~ 485 (574)
T PLN02191 406 LKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGK 485 (574)
T ss_pred cCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCC
Confidence 444443321110 0000001234677889999999999999985 6789999999999999999999
Q ss_pred cCccc-cccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCccccccCCCCCChhh
Q 009171 455 WTADI-RKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALF 533 (541)
Q Consensus 455 ~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~ 533 (541)
|+++. ...+|+.||++|||+.|+++||++|||++||||.|+|||||++|...||+++|. +.+++ +..+|++++.
T Consensus 486 ~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~-e~~~~----~~~~p~~~~~ 560 (574)
T PLN02191 486 FKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFA-EGLNR----IGKIPDEALG 560 (574)
T ss_pred CCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEe-cChhh----ccCCCcchhh
Confidence 98632 246899999999999999999999999999999999999999999999999994 34433 4457888999
Q ss_pred ccCCCC
Q 009171 534 CGKAKR 539 (541)
Q Consensus 534 c~~~~~ 539 (541)
|+.++.
T Consensus 561 C~~~~~ 566 (574)
T PLN02191 561 CGLTKQ 566 (574)
T ss_pred hhcccc
Confidence 987653
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=4.4e-95 Score=779.24 Aligned_cols=488 Identities=32% Similarity=0.573 Sum_probs=375.1
Q ss_pred eEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCC-CCeeEeeCCcCCCCCCCCCCCCCC-CCc
Q 009171 28 YRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITWNGVKQRRTTWQDGVLGT-NCP 105 (541)
Q Consensus 28 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-q~~ 105 (541)
+|+|+|+++++.+++||+.+.+|+|||++|||+||+++||+|+|+|+|+|. ++++|||||+++.++++|||+|++ ||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 488999999999999999999999999999999999999999999999995 899999999999999999999999 999
Q ss_pred cCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHhc
Q 009171 106 IPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLED 185 (541)
Q Consensus 106 i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~ 185 (541)
|+||++++|+|++ +++||||||||...|+++||+|+|||+++..++.++ ..|+|++|+|+||+++. ..........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~--~~~~~~~~~~ 156 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKS--IHEQEVGLSS 156 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCC--HHHHHhhccc
Confidence 9999999999997 689999999999999999999999999975444444 23899999999999983 3222211111
Q ss_pred --CCCCCCCCeEEEcCCCCC--------------------------ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeE
Q 009171 186 --GYSLPVPDALLINGHHNS--------------------------LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLT 237 (541)
Q Consensus 186 --~~~~~~~~~~lvNG~~~~--------------------------p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~ 237 (541)
......++.++|||++.. ..++|++|++|||||||+|..+.+.|+|++|+|+
T Consensus 157 ~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 157 KPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 112246789999998521 2489999999999999999999999999999999
Q ss_pred EEeecCcccceeeeeEEEEcCCceEEEEEEeCCCC-ceeEEEEeccccC-CCcceEEEEEecCCCCCCCC--CCCCCCC-
Q 009171 238 LVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPP-KDYYIVASTRFTK-PILTTTAILHYDGSNTPPSL--PLPIAPT- 312 (541)
Q Consensus 238 via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~~~-~~~~~~ail~y~~~~~~~~~--~~p~~p~- 312 (541)
|||+||++++|+.++.|.|++||||||+|++++++ ++|||++...... ......|||+|++......+ +.|..|.
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~ 316 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAW 316 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCc
Confidence 99999999999999999999999999999998766 4899998865332 23567899999875432111 1111121
Q ss_pred CcccccccccccccccCccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCc
Q 009171 313 YHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPG 392 (541)
Q Consensus 313 ~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~ 392 (541)
.+.... ......+......+.+. ...++++.+.......++..+|++||.+|..|..|+|.+..+++.+
T Consensus 317 ~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~ 385 (541)
T TIGR03388 317 DDFDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLN 385 (541)
T ss_pred cccchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCc
Confidence 110000 00000010000011111 1234454433322112455679999999988889988766554433
Q ss_pred ccccCCCC-----C----CCCCCCCCCCceeEEecCCCcEEEEEEEcCC------CCCCceeecCCceEEEEecccccCc
Q 009171 393 VFDLNTIK-----D----TPTPGAPAKLGASVIPTTLHDYVEIVFQNNE------TSVQSWHLDGSSFYVVGYGSGTWTA 457 (541)
Q Consensus 393 ~~~~~~~~-----~----~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~------~~~HP~HlHG~~F~Vl~~g~g~~~~ 457 (541)
+++..... + .+..+...+.++.++.++.|++|||+|+|.+ ...||||||||+||||++|.|.|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~ 465 (541)
T TIGR03388 386 AFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRP 465 (541)
T ss_pred cccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCc
Confidence 33322110 0 0000112345678899999999999999974 4679999999999999999888875
Q ss_pred c-ccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCccccccCCCCCChhhcc
Q 009171 458 D-IRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLFTETDVPPNALFCG 535 (541)
Q Consensus 458 ~-~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~~~~~~p~~~~~c~ 535 (541)
+ ....+|+.+|++|||+.|+++||++|||++||||.|+|||||++|+..||+++|... ++ ++..+|+++++|+
T Consensus 466 ~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-~~----~~~~~P~~~~~C~ 539 (541)
T TIGR03388 466 GVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-VE----KVGKLPKEALGCG 539 (541)
T ss_pred ccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-cc----ccCCCCccccCCC
Confidence 3 234689999999999999999999999999999999999999999999999999643 33 3566899999997
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.7e-93 Score=764.59 Aligned_cols=477 Identities=22% Similarity=0.385 Sum_probs=366.6
Q ss_pred eEEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCC-CCeeEeeCCcCCCCCCCCCCCCCC-CCc
Q 009171 28 YRSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITWNGVKQRRTTWQDGVLGT-NCP 105 (541)
Q Consensus 28 ~~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~-q~~ 105 (541)
.-.|+|++++..+++||+.+.+++|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++..++++||+|++ |||
T Consensus 8 ~~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcp 87 (538)
T TIGR03390 8 QPDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWP 87 (538)
T ss_pred cccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCC
Confidence 356899999999999999999999999999999999999999999999996 899999999999999999999999 999
Q ss_pred cCCCCeEEEEEEec-CCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHh
Q 009171 106 IPPNSNWTYKFQMK-DQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLE 184 (541)
Q Consensus 106 i~pG~~~~y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 184 (541)
|+||++|+|+|+++ +++||||||||...|+. ||+|+|||++++..+..+ |+|++|+|+||+++ ..+.+...+.
T Consensus 88 I~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~~~~~---d~e~~l~l~Dw~~~--~~~~~~~~~~ 161 (538)
T TIGR03390 88 IPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPPPYKY---DDERILLVSDFFSA--TDEEIEQGLL 161 (538)
T ss_pred CCCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCccCCCc---cCcEEEEEeCCCCC--CHHHHHhhhh
Confidence 99999999999974 58999999999999986 599999999875444344 88999999999998 4544433222
Q ss_pred cC--CCCCCCCeEEEcCCCC---------------CccEEEecCCEEEEEEEEcCCCCeEEEEEcCce-eEEEeecCccc
Q 009171 185 DG--YSLPVPDALLINGHHN---------------SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHT-LTLVEVEGAHC 246 (541)
Q Consensus 185 ~~--~~~~~~~~~lvNG~~~---------------~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~-~~via~DG~~~ 246 (541)
.+ .....++.+||||+.. .+.++|++||+|||||||+|+.+.+.|+|++|+ |+|||+||.++
T Consensus 162 ~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~ 241 (538)
T TIGR03390 162 STPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYT 241 (538)
T ss_pred ccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCC
Confidence 21 1134568999999962 267999999999999999999999999999999 99999999999
Q ss_pred ceeeeeEEEEcCCceEEEEEEeCCC-------CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccc
Q 009171 247 LQESYESIDIHVGQSVAVVVAMHGP-------PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSM 319 (541)
Q Consensus 247 ~p~~~d~v~l~pgeR~dv~v~~~~~-------~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~ 319 (541)
+|+.++.|.|++||||||+|+++++ +++||||+.....++.....|||+|+++.....+..|..+........
T Consensus 242 ~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~ 321 (538)
T TIGR03390 242 KPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNST 321 (538)
T ss_pred CceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcc
Confidence 9999999999999999999999864 489999998654445566899999987543221111221110000000
Q ss_pred cccccccccCccCCCCCCCCCCCcccccceeeEEEEecccc--ccCCEEEEEEcCeeeeC--CCCccccccccCCCcccc
Q 009171 320 KQARTIRTNLTANAARPNPQGSFHYGTIKVVRTIVLANSAT--KINNKLRYAVNGISYVN--PITPLKLADWFNIPGVFD 395 (541)
Q Consensus 320 ~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~--~~~g~~~~~iNg~~f~~--~~~P~l~~~~~~~~~~~~ 395 (541)
..+.+. .+.+......+. . .....+++++.+...+. ..++..+|+|||.+|.. +.+|+|...+.+. +.
T Consensus 322 ~~~~~~--~l~pl~~~~~~~--~-~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~---~~ 393 (538)
T TIGR03390 322 YDWLEY--ELEPLSEENNQD--F-PTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG---LP 393 (538)
T ss_pred hhhhhe--eeEecCccccCC--C-CCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC---CC
Confidence 001111 122111100000 0 00123566666665442 12466789999999985 6889876543211 00
Q ss_pred cCCCCCCCC-CCCCCCCceeEEecCCCcEEEEEEEcCC--------CCCCceeecCCceEEEEecccccCccc-cccCcC
Q 009171 396 LNTIKDTPT-PGAPAKLGASVIPTTLHDYVEIVFQNNE--------TSVQSWHLDGSSFYVVGYGSGTWTADI-RKRYNL 465 (541)
Q Consensus 396 ~~~~~~~p~-~~~~~~~~~~~~~~~~g~~ve~vi~N~~--------~~~HP~HlHG~~F~Vl~~g~g~~~~~~-~~~~~~ 465 (541)
.. ...++. .......++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++.. ...+++
T Consensus 394 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl 472 (538)
T TIGR03390 394 AT-PNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLEN 472 (538)
T ss_pred cC-CCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhcc
Confidence 00 000000 0001234566789999999999999974 578999999999999999999998643 235788
Q ss_pred CCCCccceEEeC----------CCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCc
Q 009171 466 NDAITRHTVQVY----------PQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDER 519 (541)
Q Consensus 466 ~~p~~rDTv~vp----------p~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~ 519 (541)
.||++|||+.|| +++|++|||++||||.|+|||||++|...||+++|.|.+.++
T Consensus 473 ~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 473 YTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred CCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 899999999996 889999999999999999999999999999999999988665
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2e-79 Score=654.92 Aligned_cols=427 Identities=21% Similarity=0.278 Sum_probs=322.0
Q ss_pred EEEEEEEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC-CCccC
Q 009171 29 RSYTWTVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT-NCPIP 107 (541)
Q Consensus 29 ~~~~l~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~ 107 (541)
++|+|++++..+.++|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++. +.+||+|++ ||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLP--FQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCC--ccccCCCcccccccC
Confidence 799999999999999999999999999999999999999999999999999999999999875 679999999 99999
Q ss_pred CCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHH----
Q 009171 108 PNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRL---- 183 (541)
Q Consensus 108 pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~---- 183 (541)
||++|+|+|++ .++||||||||...|++.||+|+|||++++.++..+ |+|++|+|+||++.. ....+..+.
T Consensus 124 PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~~---D~E~vl~L~Dw~~~~-p~~i~~~l~~~~~ 198 (587)
T TIGR01480 124 PGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVRA---DREHVVLLSDWTDLD-PAALFRKLKVMAG 198 (587)
T ss_pred CCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccCCC---CceEEEEeeecccCC-HHHHHHhhhcccc
Confidence 99999999997 679999999999999999999999999865554555 899999999999763 222222111
Q ss_pred -----------------hcCC---------CC-------------CCCCeEEEcCCCC--CccEEEecCCEEEEEEEEcC
Q 009171 184 -----------------EDGY---------SL-------------PVPDALLINGHHN--SLSFTGQKGKTYKFRVSNVG 222 (541)
Q Consensus 184 -----------------~~~~---------~~-------------~~~~~~lvNG~~~--~p~l~v~~G~~~rlRliNa~ 222 (541)
..|. +. .....+||||+.. .+++.+++|++|||||||+|
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~~~~~~~~v~~G~rvRLR~INas 278 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTPAGNWTGLFRPGEKVRLRFINGS 278 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccCCCCceEEECCCCEEEEEEEecC
Confidence 0010 00 0112489999974 24689999999999999999
Q ss_pred CCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCCCC
Q 009171 223 IATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTP 302 (541)
Q Consensus 223 ~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~ 302 (541)
+.+.+.|+|+||+|+||++||++++|+.++.+.|+|||||||+|+.+ ..|.|+|.+....+ ...+.++|++.+....
T Consensus 279 ~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~--~~~~~~~l~~~~~~~~ 355 (587)
T TIGR01480 279 AMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDR--TGYARGTLAVRLGLTA 355 (587)
T ss_pred CCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCC--CceEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999987 46899999876422 3467788887654211
Q ss_pred CCCCCCCCCC---Ccccc-c---------ccc--ccccccc-------------C--cc----------------CCCCC
Q 009171 303 PSLPLPIAPT---YHIHW-S---------MKQ--ARTIRTN-------------L--TA----------------NAARP 336 (541)
Q Consensus 303 ~~~~~p~~p~---~~~~~-~---------~~~--~~~l~~~-------------l--~~----------------~~~~p 336 (541)
+.++++..|. .+..- . ... .....-. + .. .+..+
T Consensus 356 ~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (587)
T TIGR01480 356 PVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMP 435 (587)
T ss_pred CCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCcccccCCccccccccCc
Confidence 1111111110 00000 0 000 0000000 0 00 00000
Q ss_pred -----CCC--------CCCc----------ccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcc
Q 009171 337 -----NPQ--------GSFH----------YGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGV 393 (541)
Q Consensus 337 -----~p~--------~~~~----------~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~ 393 (541)
.|. .... ......+|++.+.+... .....|+|||+.|.+ ..
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~--m~~~~wtiNG~~~~~-~~------------- 499 (587)
T TIGR01480 436 MDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGN--MERFAWSFDGEAFGL-KT------------- 499 (587)
T ss_pred ccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCC--CceeEEEECCccCCC-CC-------------
Confidence 000 0000 00123455555544211 234569999988632 01
Q ss_pred cccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccce
Q 009171 394 FDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHT 473 (541)
Q Consensus 394 ~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDT 473 (541)
.+.++.|++|+|.|.|.+.+.|||||||+.|+|+..++ .+ +.++||
T Consensus 500 ---------------------pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G-~~------------~~~~dT 545 (587)
T TIGR01480 500 ---------------------PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQG-EF------------QVRKHT 545 (587)
T ss_pred ---------------------ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCC-cc------------cccCCc
Confidence 14588999999999999999999999999999987642 11 357899
Q ss_pred EEeCCCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEe
Q 009171 474 VQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 474 v~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~ 515 (541)
+.|+|++++.++|+++|||.|+||||++.|++.|||..++|.
T Consensus 546 v~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 546 VDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred eeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 999999999999999999999999999999999999999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.1e-79 Score=652.57 Aligned_cols=411 Identities=19% Similarity=0.215 Sum_probs=304.8
Q ss_pred eEEEEEEEEEEEeCCCC-eeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCcc
Q 009171 28 YRSYTWTVTYGTISPFG-VPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPI 106 (541)
Q Consensus 28 ~~~~~l~~~~~~~~~~g-~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i 106 (541)
...|+|++++..++++| ..+.+|+|||++|||+||+++||+|+|+++|+|+++++|||||+++. +.+||+| ||+|
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I 120 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGII 120 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCC
Confidence 34699999999999875 55679999999999999999999999999999999999999999986 5699988 9999
Q ss_pred CCCCeEEEEEEecCCceeeEEcCCc----hhhhhcceeeEEEEecCCCCCCCCC--CCCCceEEEEccccccCCCHHHHH
Q 009171 107 PPNSNWTYKFQMKDQIGTFNYFPST----KVHRAFGGFGAVNVAQRSVISVPYH--IPDGEFTLLVSDWFKNFSSHKALQ 180 (541)
Q Consensus 107 ~pG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~ 180 (541)
.||++|+|+|++++++||||||||. ..|+++||+|+|||++++..+.+.+ ...+|++|+|+||+++ .++.+.
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~--~~g~~~ 198 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFS--ADGQID 198 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeC--CCCcee
Confidence 9999999999986568999999997 4999999999999999765432222 3456999999999997 333332
Q ss_pred HHHhc--CCCCCCCCeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEE-cCceeEEEeecCccc-ceeeeeEEEE
Q 009171 181 KRLED--GYSLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRI-QGHTLTLVEVEGAHC-LQESYESIDI 256 (541)
Q Consensus 181 ~~~~~--~~~~~~~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i-~~h~~~via~DG~~~-~p~~~d~v~l 256 (541)
...+. ...+..++.++|||+.+ |.+.++ +++|||||||+|+.+.+.|++ ++|+|+|||+||+++ +|+.+++|.|
T Consensus 199 ~~~~~~~~~~g~~gd~~lVNG~~~-p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~l 276 (523)
T PRK10965 199 YQLDVMTAAVGWFGDTLLTNGAIY-PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPVKVSELPI 276 (523)
T ss_pred ccccccccccCccCCeEEECCccc-ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCccEeCeEEE
Confidence 11111 11234678999999998 998886 579999999999999999998 899999999999987 7999999999
Q ss_pred cCCceEEEEEEeCCCCceeEEEEeccccCC-----CcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCcc
Q 009171 257 HVGQSVAVVVAMHGPPKDYYIVASTRFTKP-----ILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTA 331 (541)
Q Consensus 257 ~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~-----~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~ 331 (541)
+|||||||+|+++ ..+.|.+......... ......++++.........++|... ..
T Consensus 277 apGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l------------------~~ 337 (523)
T PRK10965 277 LMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL------------------AS 337 (523)
T ss_pred CccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh------------------cc
Confidence 9999999999998 4688888876432110 1112345555433211111122110 00
Q ss_pred CCCCCCCCCCCcccccceeeEEEEecc-------------------------------c--c----ccC-----CE----
Q 009171 332 NAARPNPQGSFHYGTIKVVRTIVLANS-------------------------------A--T----KIN-----NK---- 365 (541)
Q Consensus 332 ~~~~p~p~~~~~~~~~~~~r~~~l~~~-------------------------------~--~----~~~-----g~---- 365 (541)
..+.+.+.. ...|++.|... + + ... +.
T Consensus 338 ~~~~~~~~~-------~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (523)
T PRK10965 338 LPALPSLEG-------LTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDF 410 (523)
T ss_pred CCCCCcccc-------cceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccccccccccccc
Confidence 000000000 01111211110 0 0 000 00
Q ss_pred -EEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcCCC-CCCceeecCC
Q 009171 366 -LRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNNET-SVQSWHLDGS 443 (541)
Q Consensus 366 -~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~~~-~~HP~HlHG~ 443 (541)
..|+|||++|... . ..+.++.|++++|.|.|.+. +.|||||||+
T Consensus 411 ~~~~~ING~~~~~~-~---------------------------------~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~ 456 (523)
T PRK10965 411 HHANKINGKAFDMN-K---------------------------------PMFAAKKGQYERWVISGVGDMMLHPFHIHGT 456 (523)
T ss_pred cccccCCCeECCCC-C---------------------------------cceecCCCCEEEEEEEeCCCCCccCeEEeCc
Confidence 1247888887431 1 12457899999999999984 7899999999
Q ss_pred ceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcC----CcceeEEeechhhHhhcccEEEEEEe
Q 009171 444 SFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLD----NKGVWNLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 444 ~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d----npG~w~~HCHil~H~d~GMm~~~~V~ 515 (541)
+|||+++++... ....+.|||||.|++ +.++|+++|+ ++|.||||||||+|||.|||..|+|.
T Consensus 457 ~F~Vl~~~g~~~--------~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V~ 523 (523)
T PRK10965 457 QFRILSENGKPP--------AAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTVS 523 (523)
T ss_pred EEEEEEecCCCC--------CccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEeC
Confidence 999999975321 123467999999988 7788877775 46799999999999999999999984
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=5.9e-78 Score=634.20 Aligned_cols=400 Identities=19% Similarity=0.211 Sum_probs=297.7
Q ss_pred EEEEEEEEEEeCCC-CeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCC
Q 009171 30 SYTWTVTYGTISPF-GVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPP 108 (541)
Q Consensus 30 ~~~l~~~~~~~~~~-g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~p 108 (541)
.++|+++.....++ |.++.+|+|||++|||+||+++||+|+|+|+|+|++++++||||+++++. .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37999999999888 57889999999999999999999999999999999999999999998754 567765 88999
Q ss_pred CCeEEEEEEecCCceeeEEcCCch----hhhhcceeeEEEEecCCCCCCCCC--CCCCceEEEEccccccCCCHHHHHHH
Q 009171 109 NSNWTYKFQMKDQIGTFNYFPSTK----VHRAFGGFGAVNVAQRSVISVPYH--IPDGEFTLLVSDWFKNFSSHKALQKR 182 (541)
Q Consensus 109 G~~~~y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~ 182 (541)
|++++|+|++.+++||||||||.+ .|+++||+|+|||+++...+.+++ ...+|++|+|+||+++. .+... +
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~--~g~~~-~ 199 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDN--FGTPE-Y 199 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeecc--CCCcc-c
Confidence 999999999866799999999976 599999999999999765433332 24559999999999983 33211 1
Q ss_pred HhcCCCCCCCCeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEE-cCceeEEEeecCccc-ceeeeeEEEEcCCc
Q 009171 183 LEDGYSLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRI-QGHTLTLVEVEGAHC-LQESYESIDIHVGQ 260 (541)
Q Consensus 183 ~~~~~~~~~~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i-~~h~~~via~DG~~~-~p~~~d~v~l~pge 260 (541)
......+..++.+||||+.+ |.++|++| +|||||||+|+.+.+.|+| ++|+|+|||+||+++ +|+.++++.|+|||
T Consensus 200 ~~~~~~g~~gd~~lvNG~~~-p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~pGe 277 (471)
T PRK10883 200 NEPGSGGFVGDTLLVNGVQS-PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAPGE 277 (471)
T ss_pred cccccCCccCCeeEECCccC-CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECCCC
Confidence 11122345678999999999 99999985 7999999999999999999 899999999997776 79999999999999
Q ss_pred eEEEEEEeCCCCceeEEEEeccccCC-Cc----------ceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccC
Q 009171 261 SVAVVVAMHGPPKDYYIVASTRFTKP-IL----------TTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNL 329 (541)
Q Consensus 261 R~dv~v~~~~~~g~~~i~~~~~~~~~-~~----------~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l 329 (541)
||||+|++++ .+.+.+++....... .. ....+++....... +..+ ..+...+
T Consensus 278 R~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------~~~p~~l 340 (471)
T PRK10883 278 RREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLL-----PLVT-----------DNLPMRL 340 (471)
T ss_pred eEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEccccc-----cCCC-----------CcCChhh
Confidence 9999999974 566766653211000 00 00111222111000 0000 0000011
Q ss_pred ccCCCCCCCCCCCcccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCC
Q 009171 330 TANAARPNPQGSFHYGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPA 409 (541)
Q Consensus 330 ~~~~~~p~p~~~~~~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~ 409 (541)
.... +.+ ......+++.+.. ..|.|||++|.+...+
T Consensus 341 ~~~~--~~~------~~~~~~~~~~l~~--------~~~~INg~~~~~~~~~---------------------------- 376 (471)
T PRK10883 341 LPDE--IME------GSPIRSREISLGD--------DLPGINGALWDMNRID---------------------------- 376 (471)
T ss_pred cCCC--CCC------CCCcceEEEEecC--------CcCccCCcccCCCcce----------------------------
Confidence 1000 000 0111234444432 1367999998542111
Q ss_pred CCceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcC
Q 009171 410 KLGASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLD 489 (541)
Q Consensus 410 ~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~d 489 (541)
+.++.|++++|.+.|. +.|||||||+.|||+++++.... ..+..|||||.|+ +.++|+++|+
T Consensus 377 ------~~~~~g~~e~W~~~n~--~~HP~HlHg~~FqVl~~~G~~~~--------~~~~gwkDTV~v~--~~v~i~~~f~ 438 (471)
T PRK10883 377 ------VTAQQGTWERWTVRAD--MPQAFHIEGVMFLIRNVNGAMPF--------PEDRGWKDTVWVD--GQVELLVYFG 438 (471)
T ss_pred ------eecCCCCEEEEEEECC--CCcCEeECCccEEEEEecCCCCC--------ccccCcCcEEEcC--CeEEEEEEec
Confidence 3578999999999886 68999999999999999753211 1234699999996 4699999999
Q ss_pred Ccc----eeEEeechhhHhhcccEEEEEEecC
Q 009171 490 NKG----VWNLRSAIWERRYLGQELYLRVSND 517 (541)
Q Consensus 490 npG----~w~~HCHil~H~d~GMm~~~~V~~~ 517 (541)
++| .||||||||+|||.|||..|+|.++
T Consensus 439 ~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~~ 470 (471)
T PRK10883 439 QPSWAHFPFLFYSQTLEMADRGSIGQLLVNPA 470 (471)
T ss_pred CCCCCCCcEEeecccccccccCCccCeEEecC
Confidence 977 8999999999999999999999663
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.6e-61 Score=508.64 Aligned_cols=411 Identities=21% Similarity=0.221 Sum_probs=297.5
Q ss_pred EEEEEEEEEEeC-CCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC-CCccC
Q 009171 30 SYTWTVTYGTIS-PFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT-NCPIP 107 (541)
Q Consensus 30 ~~~l~~~~~~~~-~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~ 107 (541)
...+........ .++.....|+|||++|||+||+++||+|+++++|+|.+.+++||||+.++ +.+||++.. |+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCC
Confidence 344444444443 55778899999999999999999999999999999988799999998775 789999887 99999
Q ss_pred CCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCCCHHHHHHHHhcCC
Q 009171 108 PNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFSSHKALQKRLEDGY 187 (541)
Q Consensus 108 pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~ 187 (541)
||++++|.|+. +++||||||+|.+.|+++||+|++||++....+..+ |++..++..+|.... ....... ....
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~~---d~~~~i~~~~~~~~~--~~~~~~~-~~~~ 184 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLGV---DDEPVILQDDWLDED--GTDLYQE-GPAM 184 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCCCC---CceEEEEEeeeecCC--CCccccC-Cccc
Confidence 99999999996 567799999999999999999999999986555444 667777777777652 2111111 0122
Q ss_pred CCCCCCeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEE
Q 009171 188 SLPVPDALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVA 267 (541)
Q Consensus 188 ~~~~~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~ 267 (541)
.....+..+|||+.. |.+.++.| +|||||+|+++.+.+.+++.+++++||++||.+++|..+|.+.|+||||+||+++
T Consensus 185 ~~~~g~~~~vnG~~~-p~~~~~~g-~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 185 GGFPGDTLLVNGAIL-PFKAVPGG-VVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred cCCCCCeEEECCCcc-ceeecCCC-eEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 345668999999877 77777664 5999999999989899999999999999999999999999999999999999999
Q ss_pred eCCCCceeEEEEeccccCCCcceEEEEEecCCCCCCC---CCCCCCCCCcc-cccccccccccccCccCCCCCCCCCCCc
Q 009171 268 MHGPPKDYYIVASTRFTKPILTTTAILHYDGSNTPPS---LPLPIAPTYHI-HWSMKQARTIRTNLTANAARPNPQGSFH 343 (541)
Q Consensus 268 ~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~---~~~p~~p~~~~-~~~~~~~~~l~~~l~~~~~~p~p~~~~~ 343 (541)
+++ .+.+.+.+... .......+............ ......+..+. +.. ... .+...... +
T Consensus 263 ~~~-~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~----~~~~~~~~--~----- 326 (451)
T COG2132 263 MND-GGAVTLTALGE--DMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHA--PVG----LLVTILVE--P----- 326 (451)
T ss_pred cCC-CCeEEEEeccc--cCCceeeeeeccccccccccccccccccCCCcchhhcc--ccc----cchhhcCC--C-----
Confidence 984 78888888751 11111222221111110000 00000000000 000 000 00000000 0
Q ss_pred ccccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcE
Q 009171 344 YGTIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDY 423 (541)
Q Consensus 344 ~~~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 423 (541)
.......+.+.. ..+...|.+|++.|... ...+.++.|++
T Consensus 327 --~~~~~~~~~l~~----~~~~~~~~~n~~~~~~~----------------------------------~~~~~~~~G~~ 366 (451)
T COG2132 327 --GPNRDTDFHLIG----GIGGYVWAINGKAFDDN----------------------------------RVTLIAKAGTR 366 (451)
T ss_pred --cccccccchhhc----ccccccccccCccCCCC----------------------------------cCceeecCCCE
Confidence 000111112211 12234577887776431 12356789999
Q ss_pred EEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeEEeechhhH
Q 009171 424 VEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWER 503 (541)
Q Consensus 424 ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H 503 (541)
++|+|.|.+.+.|||||||+.|+|++.+ . ......+.||||+.+.+++.++++|.+++||.||||||+++|
T Consensus 367 ~~~~i~n~~~~~HP~HlHg~~F~v~~~~-~--------~~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H 437 (451)
T COG2132 367 ERWVLTNDTPMPHPFHLHGHFFQVLSGD-A--------PAPGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEH 437 (451)
T ss_pred EEEEEECCCCCccCeEEcCceEEEEecC-C--------CcccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhH
Confidence 9999999999999999999999999997 1 122345689999999999999999999999999999999999
Q ss_pred hhcccEEEEEEec
Q 009171 504 RYLGQELYLRVSN 516 (541)
Q Consensus 504 ~d~GMm~~~~V~~ 516 (541)
++.|||..+.|..
T Consensus 438 ~~~Gm~~~~~v~~ 450 (451)
T COG2132 438 EDNGMMGQFGVVP 450 (451)
T ss_pred hhcCCeeEEEecC
Confidence 9999999998753
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.9e-49 Score=396.70 Aligned_cols=263 Identities=19% Similarity=0.192 Sum_probs=219.0
Q ss_pred ccCCCeEEEEEEEEEEEeCC-CCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCC--CCeeEeeCCcCCCCCCCCCCC
Q 009171 23 NAEDPYRSYTWTVTYGTISP-FGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD--EPFLITWNGVKQRRTTWQDGV 99 (541)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~--~~~~iH~HG~~~~~~~~~DG~ 99 (541)
.+..++++|+|++++..+.+ +|+.+.+|+|||++|||+||+++||+|+|+|+|+++ .++++||||. ..+||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~-----~~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAA-----TGALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCC-----CccCCC
Confidence 34568899999999999885 599999999999999999999999999999999985 5899999996 247888
Q ss_pred CCC-CCccCCCCeEEEEEEecCCceeeEEcCCc----hhhhhcceeeEEEEecCCCCCCCCCCCCCceEEEEccccccCC
Q 009171 100 LGT-NCPIPPNSNWTYKFQMKDQIGTFNYFPST----KVHRAFGGFGAVNVAQRSVISVPYHIPDGEFTLLVSDWFKNFS 174 (541)
Q Consensus 100 ~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~ 174 (541)
+++ | |.||++++|+|.+ +++||||||||. ..|+.+||+|+|||++++..+ ..|+|++|+++||+++.
T Consensus 97 ~~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~- 168 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPK- 168 (311)
T ss_pred Cccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEeccc-
Confidence 766 6 9999999999996 679999999995 479999999999999865322 33899999999999973
Q ss_pred CHHHH-HHHHhc-C-CCCCCCCeEEEcCCCC--CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCccccee
Q 009171 175 SHKAL-QKRLED-G-YSLPVPDALLINGHHN--SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQE 249 (541)
Q Consensus 175 ~~~~~-~~~~~~-~-~~~~~~~~~lvNG~~~--~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~ 249 (541)
.+.. ..+... . .....++.++|||+.. .+.+++++|+++||||+|+++.+.+.|+++++.+++|+.||+++.+.
T Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~~ 247 (311)
T TIGR02376 169 -DEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFANPP 247 (311)
T ss_pred -cccccccccchHHHHhcCCCCEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcccCCC
Confidence 2111 000000 0 0124568999999953 25689999999999999999999999999999999999999999864
Q ss_pred e--eeEEEEcCCceEEEEEEeCCCCceeEEEEeccccCCCcceEEEEEecCCC
Q 009171 250 S--YESIDIHVGQSVAVVVAMHGPPKDYYIVASTRFTKPILTTTAILHYDGSN 300 (541)
Q Consensus 250 ~--~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~ail~y~~~~ 300 (541)
. ++++.|+||||+||+|+++ .+|.|+++++...........++|+|++..
T Consensus 248 ~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 248 NRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGAW 299 (311)
T ss_pred CCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHhCCCEEEEEECCCC
Confidence 4 8999999999999999999 489999999976443345688999998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=7.3e-37 Score=261.58 Aligned_cols=115 Identities=38% Similarity=0.722 Sum_probs=107.9
Q ss_pred EEEEEEeCCCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC-CCccCCCCeE
Q 009171 34 TVTYGTISPFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT-NCPIPPNSNW 112 (541)
Q Consensus 34 ~~~~~~~~~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG~~~ 112 (541)
+|++.++.++|..+++|+|||++|||+||+++||+|+|+|+|+|+++++|||||+++...+++||++++ ||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 478899999987799999999999999999999999999999999999999999999888889999998 9999999999
Q ss_pred EEEEEecCCceeeEEcCCchhhhhcceeeEEEEecC
Q 009171 113 TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQR 148 (541)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (541)
+|+|++++++||||||||.+.|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999998666999999999998888999999999985
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=4.3e-30 Score=228.72 Aligned_cols=108 Identities=35% Similarity=0.494 Sum_probs=99.0
Q ss_pred CCCceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEc
Q 009171 409 AKLGASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSL 488 (541)
Q Consensus 409 ~~~~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~ 488 (541)
.+.+...+.++.|++|+|+|.|.+...|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|||++
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~ 108 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA 108 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe
Confidence 45677889999999999999999999999999999999999998877655556688899999999999999999999999
Q ss_pred CCcceeEEeechhhHhhcccEEEEEEec
Q 009171 489 DNKGVWNLRSAIWERRYLGQELYLRVSN 516 (541)
Q Consensus 489 dnpG~w~~HCHil~H~d~GMm~~~~V~~ 516 (541)
+|||.|+||||+++|++.|||+.++|.+
T Consensus 109 ~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 109 DNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999865
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=2.4e-26 Score=209.08 Aligned_cols=139 Identities=32% Similarity=0.587 Sum_probs=113.9
Q ss_pred CceEEEEccccccCCCHHHHHHHHhcC----CCCCCCCeEEEcCCCC------------CccEEEecCCEEEEEEEEcCC
Q 009171 160 GEFTLLVSDWFKNFSSHKALQKRLEDG----YSLPVPDALLINGHHN------------SLSFTGQKGKTYKFRVSNVGI 223 (541)
Q Consensus 160 ~e~~l~l~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~lvNG~~~------------~p~l~v~~G~~~rlRliNa~~ 223 (541)
+|++|+++||+++. ....+.+....+ ..++.++.++|||+.. .+.+++++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDD-SDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSC-TTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCC-HHHhhhhhccccccccCCCcCCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccC
Confidence 48999999999884 333333333322 2367899999999642 489999999999999999999
Q ss_pred CCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEecc----ccCCCcceEEEEEecCC
Q 009171 224 ATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTR----FTKPILTTTAILHYDGS 299 (541)
Q Consensus 224 ~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~----~~~~~~~~~ail~y~~~ 299 (541)
.+.+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++|.|+|++... .........|+|+|+++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~~ 159 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDGA 159 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETTS
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999997799999999521 22235779999999863
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.78 E-value=1.4e-18 Score=154.28 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=82.0
Q ss_pred CeeeeEEEECCCCcCceEEEecCCEEEEEEEECC---CCCeeEeeCCcCCCCCCCCCCCCCC-CCccCCC---C-e--EE
Q 009171 44 GVPQQGILINGQFPGPAIEAVTNDNIIVNLINKL---DEPFLITWNGVKQRRTTWQDGVLGT-NCPIPPN---S-N--WT 113 (541)
Q Consensus 44 g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l---~~~~~iH~HG~~~~~~~~~DG~~~~-q~~i~pG---~-~--~~ 113 (541)
+....-+.++| .+||+|++++||+|+|+|+|.+ .....||+||......+.+||++.+ |+++.|+ + . .+
T Consensus 38 ~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~ 116 (148)
T TIGR03095 38 GPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTD 116 (148)
T ss_pred CCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeE
Confidence 55566677788 6799999999999999999995 4567888888766555679999888 9988884 1 1 34
Q ss_pred EEEEecCCceeeEEcCCchhhhhcceeeEEEEe
Q 009171 114 YKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVA 146 (541)
Q Consensus 114 y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (541)
+.|+. .++||||||||...|..+||+|.|||+
T Consensus 117 ~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 117 FTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 45554 379999999999999999999999995
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.73 E-value=4.7e-16 Score=156.09 Aligned_cols=243 Identities=12% Similarity=0.028 Sum_probs=159.0
Q ss_pred CCeEEEcCCCCCccEEEecCCEEEEEEEEcCC-CCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCC
Q 009171 192 PDALLINGHHNSLSFTGQKGKTYKFRVSNVGI-ATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHG 270 (541)
Q Consensus 192 ~~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~-~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~ 270 (541)
.+.+++||+...|.+++++|+++++++.|... ...+.++++++. +.||... ...+.||+++.+.+.++
T Consensus 47 ~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~- 115 (311)
T TIGR02376 47 YQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKAT- 115 (311)
T ss_pred EEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcC-
Confidence 45899999987799999999999999999863 245688888864 4566431 23389999999999987
Q ss_pred CCceeEEEEeccc--cCC-CcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCccccc
Q 009171 271 PPKDYYIVASTRF--TKP-ILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTI 347 (541)
Q Consensus 271 ~~g~~~i~~~~~~--~~~-~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~ 347 (541)
.+|.||+|||... ..+ .....+.|.++.... .|. ...+.. + ...++ .+...... .+
T Consensus 116 ~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~-----~~~-~d~e~~--l-~l~d~--~~~~~~~~---~~------- 174 (311)
T TIGR02376 116 RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG-----LPE-YDKEYY--I-GESDL--YTPKDEGE---GG------- 174 (311)
T ss_pred CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC-----CcC-cceeEE--E-eeeeE--eccccccc---cc-------
Confidence 6999999999532 111 223445555544211 111 100000 0 00111 01000000 00
Q ss_pred ceeeEEEEecc-ccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEE
Q 009171 348 KVVRTIVLANS-ATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEI 426 (541)
Q Consensus 348 ~~~r~~~l~~~-~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~ 426 (541)
.+..... +.. .....+.|||+.+.. .| .+.++.|++++|
T Consensus 175 ----~~~~~~~~~~~-~~~~~~~iNG~~~~~--~~---------------------------------~~~v~~G~~~Rl 214 (311)
T TIGR02376 175 ----AYEDDVAAMRT-LTPTHVVFNGAVGAL--TG---------------------------------DNALTAGVGERV 214 (311)
T ss_pred ----cccchHHHHhc-CCCCEEEECCccCCC--CC---------------------------------CcccccCCcEEE
Confidence 0000000 000 111347889975311 01 125678999999
Q ss_pred EEEcCCC-CCCceeecCCceEEEEecccccCccccccCcCCCCC-ccceEEeCCCCEEEEEEEcCCcceeEEeechhhHh
Q 009171 427 VFQNNET-SVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAI-TRHTVQVYPQSWSAIYVSLDNKGVWNLRSAIWERR 504 (541)
Q Consensus 427 vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~-~rDTv~vpp~g~~~irf~~dnpG~w~~HCHil~H~ 504 (541)
.|.|.+. ..+.||++|++|.++..++....+ +. ..|++.|.||+...|.+++++||.|++|||...|.
T Consensus 215 RiiNa~~~~~~~~~~~g~~~~~v~~DG~~~~~----------~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~ 284 (311)
T TIGR02376 215 LFVHSQPNRDSRPHLIGGHGDYVWVTGKFANP----------PNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEA 284 (311)
T ss_pred EEEcCCCCCCCCCeEecCCceEEEECCcccCC----------CCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHH
Confidence 9999874 679999999999999996543221 22 36999999999999999999999999999999887
Q ss_pred -hcccEEEEEEec
Q 009171 505 -YLGQELYLRVSN 516 (541)
Q Consensus 505 -d~GMm~~~~V~~ 516 (541)
..||++.++|..
T Consensus 285 ~~~g~~~~i~~~g 297 (311)
T TIGR02376 285 FEKGAAAQVKVEG 297 (311)
T ss_pred HhCCCEEEEEECC
Confidence 779999998854
No 23
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.66 E-value=3.2e-16 Score=168.79 Aligned_cols=100 Identities=18% Similarity=0.282 Sum_probs=86.1
Q ss_pred eeeeEEEECCCCcCc--eEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC---CCccCCCCeEEEEEEec
Q 009171 45 VPQQGILINGQFPGP--AIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT---NCPIPPNSNWTYKFQMK 119 (541)
Q Consensus 45 ~~~~~~~~Ng~~pGP--~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~---q~~i~pG~~~~y~f~~~ 119 (541)
..+.+|+|||+.+++ .|++++||+|+|+|.|.+...+.|||||+.... ...||.... ...|.||++++|+|.+
T Consensus 483 m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v-~~~~G~~~~~~dTv~V~Pg~t~~~~f~a- 560 (587)
T TIGR01480 483 MERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSEL-EDGQGEFQVRKHTVDVPPGGKRSFRVTA- 560 (587)
T ss_pred CceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeee-ecCCCcccccCCceeeCCCCEEEEEEEC-
Confidence 457789999998874 799999999999999999999999999997653 233664322 4689999999999995
Q ss_pred CCceeeEEcCCchhhhhcceeeEEEEe
Q 009171 120 DQIGTFNYFPSTKVHRAFGGFGAVNVA 146 (541)
Q Consensus 120 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 146 (541)
+++|+||||||...|...||++.+.|.
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 789999999999999999999999874
No 24
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.50 E-value=2e-13 Score=117.01 Aligned_cols=118 Identities=20% Similarity=0.178 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhhcccCCCeEEEEEEEE--EEEe---CCCCeeeeEE-EECCCCcCceEEEecCCEEEEEEEECCCCCe-
Q 009171 9 ILIGILACLCVFWVNAEDPYRSYTWTVT--YGTI---SPFGVPQQGI-LINGQFPGPAIEAVTNDNIIVNLINKLDEPF- 81 (541)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~---~~~g~~~~~~-~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~- 81 (541)
.|++|.+-|. ....+.+..++|++++. +..+ ...|.....+ ++|+++..+.|+|++||+|+++++|..+.++
T Consensus 6 ~~~~~~~~~~-~~~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~ 84 (135)
T TIGR03096 6 MFAGFALGLL-LMGTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEG 84 (135)
T ss_pred HhHHHHHHHh-hccchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccc
Confidence 3555665544 45566777889999999 5555 4678888877 9999999999999999999999999975443
Q ss_pred -eEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEE
Q 009171 82 -LITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAV 143 (541)
Q Consensus 82 -~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~l 143 (541)
.+++||+ +..|+||++.+++|++ +++|+|||||..|..... |-|.|
T Consensus 85 f~i~~~gi--------------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~~~H-~~~~~ 131 (135)
T TIGR03096 85 FSIDAYGI--------------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPKNIH-LPGSL 131 (135)
T ss_pred eEECCCCc--------------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCChhhc-CCCcc
Confidence 4444432 2458999999999995 889999999998854433 44444
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.23 E-value=5.2e-10 Score=121.22 Aligned_cols=239 Identities=13% Similarity=0.099 Sum_probs=147.5
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEE-eecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLV-EVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~vi-a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..+++||+...|.++++.|+++++++.|.-... ..+|.||....-- ..||.+ .+..-.|.||+.+...+++.+.
T Consensus 23 ~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~-tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~~ 97 (539)
T TIGR03389 23 SILTVNGKFPGPTLYAREGDTVIVNVTNNVQYN-VTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITGQ 97 (539)
T ss_pred EEEEECCcccCCEEEEEcCCEEEEEEEeCCCCC-eeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecCC
Confidence 589999999889999999999999999998754 3677777542211 257754 2333468999999999998546
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCcccccceee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVR 351 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r 351 (541)
+|+||+|+|..... ....+-|.+.+... .+.|... .+.+ ....+.+..... ... . ...
T Consensus 98 ~GT~WYHsH~~~~~--~Gl~G~lIV~~~~~---~~~~~~~-~d~e--------~~l~l~Dw~~~~-~~~-----~--~~~ 155 (539)
T TIGR03389 98 RGTLWWHAHISWLR--ATVYGAIVILPKPG---VPYPFPK-PDRE--------VPIILGEWWNAD-VEA-----V--INQ 155 (539)
T ss_pred CeeEEEecCchhhh--ccceEEEEEcCCCC---CCCCCCC-CCce--------EEEEecccccCC-HHH-----H--HHH
Confidence 99999999964221 22334444443221 0111100 0000 000011100000 000 0 000
Q ss_pred EEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcC
Q 009171 352 TIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNN 431 (541)
Q Consensus 352 ~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~ 431 (541)
. +.... ...-...+.|||+...... + .......+.++.|++++|.|.|.
T Consensus 156 -~-~~~~~-~~~~~d~~liNG~~~~~~~--------------------~--------~~~~~~~i~v~~G~~~RlRlINa 204 (539)
T TIGR03389 156 -A-NQTGG-APNVSDAYTINGHPGPLYN--------------------C--------SSKDTFKLTVEPGKTYLLRIINA 204 (539)
T ss_pred -H-HhcCC-CCCccceEEECCCcCCCCC--------------------C--------CCCCceEEEECCCCEEEEEEEec
Confidence 0 00000 0001124678887531100 0 00123468899999999999999
Q ss_pred C-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cceeEEeech
Q 009171 432 E-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGVWNLRSAI 500 (541)
Q Consensus 432 ~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~w~~HCHi 500 (541)
+ ...+.|||+||+|+|++.++.. ..|...|++.|.+|++..|.+++++ +|.|.++-+.
T Consensus 205 ~~~~~~~~~idgH~~~VIa~DG~~-----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~ 264 (539)
T TIGR03389 205 ALNDELFFAIANHTLTVVEVDATY-----------TKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARP 264 (539)
T ss_pred cCCceEEEEECCCeEEEEEeCCcc-----------cCceEeCeEEecCCCEEEEEEECCCCCceEEEEEec
Confidence 7 5568999999999999997532 2356679999999999999999987 8999887654
No 26
>PLN02835 oxidoreductase
Probab=99.22 E-value=8.7e-10 Score=118.68 Aligned_cols=225 Identities=11% Similarity=0.065 Sum_probs=139.5
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.+++++|+++++++.|.-... ..+|.||..+.- -..||.+. ..-.|.||+.+...++..+.
T Consensus 49 ~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~-ttiHWHGl~~~~~~~~DGv~~-----tQ~pI~PG~sf~Y~F~~~~q 122 (539)
T PLN02835 49 QVILINGQFPGPRLDVVTNDNIILNLINKLDQP-FLLTWNGIKQRKNSWQDGVLG-----TNCPIPPNSNYTYKFQTKDQ 122 (539)
T ss_pred EEEEECCcCCCCCEEEECCCEEEEEEEeCCCCC-CcEEeCCcccCCCCCCCCCcc-----CcCCCCCCCcEEEEEEECCC
Confidence 579999999889999999999999999998754 477777765432 24698643 13479999999999987546
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCcccccceee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVR 351 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r 351 (541)
+|+||+|+|.... ......+-|.+..... .+.|. +..+.+. ...+.+..... . . ....
T Consensus 123 ~GT~WYHsH~~~q-~~~Gl~G~lIV~~~~~---~~~p~-~~~d~e~--------~l~l~Dw~~~~-~-~-------~~~~ 180 (539)
T PLN02835 123 IGTFTYFPSTLFH-KAAGGFGAINVYERPR---IPIPF-PLPDGDF--------TLLVGDWYKTS-H-K-------TLQQ 180 (539)
T ss_pred CEeEEEEeCccch-hcCcccceeEEeCCCC---CCcCC-CCCCceE--------EEEeeccccCC-H-H-------HHHH
Confidence 9999999995321 1112223333322111 01111 0000000 00011100000 0 0 0000
Q ss_pred EEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcC
Q 009171 352 TIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNN 431 (541)
Q Consensus 352 ~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~ 431 (541)
. +.... ...-.....|||+.. ..+.++.|++++|.|.|.
T Consensus 181 ~--~~~g~-~~~~~d~~liNG~~~--------------------------------------~~~~v~~G~~yRlRliNa 219 (539)
T PLN02835 181 R--LDSGK-VLPFPDGVLINGQTQ--------------------------------------STFSGDQGKTYMFRISNV 219 (539)
T ss_pred H--hhcCC-CCCCCceEEEccccC--------------------------------------ceEEECCCCEEEEEEEEc
Confidence 0 00000 000012355676531 135678999999999999
Q ss_pred CC-CCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cceeEEe
Q 009171 432 ET-SVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGVWNLR 497 (541)
Q Consensus 432 ~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~w~~H 497 (541)
+. ...-|||.||+|.|++.++... .|...|++.|.+|++..+.++++. +|.|-++
T Consensus 220 ~~~~~~~f~i~gH~~~VI~~DG~~v-----------~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~ 276 (539)
T PLN02835 220 GLSTSLNFRIQGHTMKLVEVEGSHT-----------IQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIV 276 (539)
T ss_pred CCCccEEEEECCCEEEEEEECCccC-----------CCceeeEEEECcCceEEEEEEcCCCCCcEEEE
Confidence 84 5799999999999999976432 244579999999999999999976 7877766
No 27
>PRK10965 multicopper oxidase; Provisional
Probab=99.22 E-value=4e-10 Score=120.87 Aligned_cols=249 Identities=15% Similarity=0.151 Sum_probs=147.5
Q ss_pred EEEEEEEEEEEeCCCC--------------eeeeEEEECCCCcCceEEEecCCEEEEEEEECCC-CCeeEee-CCcCCCC
Q 009171 29 RSYTWTVTYGTISPFG--------------VPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITW-NGVKQRR 92 (541)
Q Consensus 29 ~~~~l~~~~~~~~~~g--------------~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~ 92 (541)
.++.|.++......+| .....+++||+. .|.+.++ |.++++|+.|... ....+.+ .|.....
T Consensus 180 ~d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~v 257 (523)
T PRK10965 180 DDIPVILQDKRFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYV 257 (523)
T ss_pred ceeeEEEEeeeeCCCCceeccccccccccCccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEE
Confidence 3556666665543333 233568999994 7888885 6699999999974 4556665 3432221
Q ss_pred CCCCCCCCC-----C-CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcce------eeEEEEecCC---CCCCC---
Q 009171 93 TTWQDGVLG-----T-NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGG------FGAVNVAQRS---VISVP--- 154 (541)
Q Consensus 93 ~~~~DG~~~-----~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl------~G~liV~~~~---~~~~~--- 154 (541)
-..||.+. + ...|.|||+++..++.. +.|.++...-...+...++ +-.+.+.... ....|
T Consensus 258 -Ia~DG~~l~~P~~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l 335 (523)
T PRK10965 258 -IASDGGLLAEPVKVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSL 335 (523)
T ss_pred -EEeCCCcccCccEeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhh
Confidence 46798542 1 45689999999999974 4677766543211111000 1122233111 00110
Q ss_pred -----CCC----CCCceEEEEcccccc--------CCCHHHHHH--------HHhcC----------CCCC---CCCeEE
Q 009171 155 -----YHI----PDGEFTLLVSDWFKN--------FSSHKALQK--------RLEDG----------YSLP---VPDALL 196 (541)
Q Consensus 155 -----~~~----~~~e~~l~l~d~~~~--------~~~~~~~~~--------~~~~~----------~~~~---~~~~~l 196 (541)
.+. ..+.+.+.+..+.-. +...+.... .+..| .... ....++
T Consensus 336 ~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (523)
T PRK10965 336 ASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANK 415 (523)
T ss_pred ccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 011223322211000 000000000 00000 0000 011248
Q ss_pred EcCCCC---CccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccce---eeeeEEEEcCCceEEEEEEeCC
Q 009171 197 INGHHN---SLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQ---ESYESIDIHVGQSVAVVVAMHG 270 (541)
Q Consensus 197 vNG~~~---~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p---~~~d~v~l~pgeR~dv~v~~~~ 270 (541)
|||+.. .+.++++.|++.+|+|+|.+....+.||||++.|+|++.||.+..+ ...|+|.+.+ ++.+++++++.
T Consensus 416 ING~~~~~~~~~~~~~~G~~e~w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~ 494 (523)
T PRK10965 416 INGKAFDMNKPMFAAKKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDH 494 (523)
T ss_pred CCCeECCCCCcceecCCCCEEEEEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecC
Confidence 999974 2557899999999999999976678999999999999999998753 4589999977 78999999973
Q ss_pred ---CCceeEEEEecc
Q 009171 271 ---PPKDYYIVASTR 282 (541)
Q Consensus 271 ---~~g~~~i~~~~~ 282 (541)
.+|.|.+|||..
T Consensus 495 ~~~~~g~~~~HCHiL 509 (523)
T PRK10965 495 DAPKEHAYMAHCHLL 509 (523)
T ss_pred CCCCCCCEEEEeCch
Confidence 467999999965
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=99.16 E-value=1.4e-09 Score=117.21 Aligned_cols=233 Identities=12% Similarity=0.096 Sum_probs=144.6
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.|++++|+++++++.|.... ...+|.||....- -..||.+. ..-.|.||+.+...+++.+.
T Consensus 47 ~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~-~ttiHWHGi~q~~~~~~DGv~~-----TQcpI~PG~sf~Y~F~~~~q 120 (552)
T PLN02354 47 QVILINGQFPGPNINSTSNNNIVINVFNNLDE-PFLLTWSGIQQRKNSWQDGVPG-----TNCPIPPGTNFTYHFQPKDQ 120 (552)
T ss_pred EEEEECCCCcCCcEEEeCCCEEEEEEEECCCC-CcccccccccCCCCcccCCCcC-----CcCCCCCCCcEEEEEEeCCC
Confidence 58999999988999999999999999999864 3466777654432 24799642 24489999999999998545
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCC-CCCcccccccccccccccCccCCCCCCCCCCCccccccee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIA-PTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVV 350 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 350 (541)
+|+||+|+|..... .....+-|.+.+... .+.|.. +..+.. ..+.+..... .. ...
T Consensus 121 ~GT~WYHsH~~~Q~-~~Gl~G~lII~~~~~---~~~p~~~~d~e~~----------l~l~Dw~~~~--~~-------~~~ 177 (552)
T PLN02354 121 IGSYFYYPSTGMHR-AAGGFGGLRVNSRLL---IPVPYADPEDDYT----------VLIGDWYTKS--HT-------ALK 177 (552)
T ss_pred CcceEEecCcccee-cCCccceEEEcCCcC---CCCCCCCcCceEE----------EEeeeeccCC--HH-------HHH
Confidence 89999999853211 122233333333211 011110 101100 0011100000 00 000
Q ss_pred eEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 351 RTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 351 r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
.. +.... .........|||+..... ......++++.|++.+|.|.|
T Consensus 178 ~~--~~~g~-~~~~~d~~liNG~~~~~~-------------------------------~~~~~~~~v~~Gk~yRlRiIN 223 (552)
T PLN02354 178 KF--LDSGR-TLGRPDGVLINGKSGKGD-------------------------------GKDEPLFTMKPGKTYRYRICN 223 (552)
T ss_pred HH--HhcCC-CCCCCCeEEEeCCcCCCC-------------------------------CCCceEEEECCCCEEEEEEEe
Confidence 00 00000 000112366787642100 012345789999999999999
Q ss_pred CC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cceeEEeec
Q 009171 431 NE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGVWNLRSA 499 (541)
Q Consensus 431 ~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~w~~HCH 499 (541)
.+ ....-|||.||+|+|++.++... .|...|++.|.+|++..+.++++. +|.|-+.-.
T Consensus 224 a~~~~~~~f~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~ 283 (552)
T PLN02354 224 VGLKSSLNFRIQGHKMKLVEMEGSHV-----------LQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVAS 283 (552)
T ss_pred cCCCceEEEEECCceEEEEEeCCccc-----------CCcceeEEEEccCceEEEEEECCCCCCcEEEEEe
Confidence 88 55799999999999999975432 244569999999999999999986 898877665
No 29
>PLN02792 oxidoreductase
Probab=99.12 E-value=3.8e-09 Score=113.45 Aligned_cols=228 Identities=12% Similarity=0.099 Sum_probs=139.8
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEE-eecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLV-EVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~vi-a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.|++++|+++++++.|-... ...+|.||....-- ..||.+. + .-.|.||+.+...+++++.
T Consensus 36 ~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~-~ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~~q 109 (536)
T PLN02792 36 RGILINGQFPGPEIRSLTNDNLVINVHNDLDE-PFLLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVKDQ 109 (536)
T ss_pred EEEEECCCCCCCcEEEECCCEEEEEEEeCCCC-CcCEeCCCcccCCCCccCCCCC----C-cCccCCCCcEEEEEEeCCC
Confidence 57999999988999999999999999999874 33566666543222 2799532 2 2589999999999998646
Q ss_pred CceeEEEEeccccCCCcceE-EEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCccccccee
Q 009171 272 PKDYYIVASTRFTKPILTTT-AILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVV 350 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~-ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 350 (541)
+|+||+|+|..... ..... +++.+.....+ .+.+. +..+.. ..+.+..... .. ...
T Consensus 110 ~GT~WYHsH~~~q~-~~Gl~G~liI~~~~~~~--~p~~~-~d~e~~----------i~l~Dw~~~~--~~-------~~~ 166 (536)
T PLN02792 110 VGSYFYFPSLAVQK-AAGGYGSLRIYSLPRIP--VPFPE-PAGDFT----------FLIGDWYRRN--HT-------TLK 166 (536)
T ss_pred ccceEEecCcchhh-hcccccceEEeCCcccC--cCCCc-ccceeE----------EEecccccCC--HH-------HHH
Confidence 99999999963211 11222 33333321111 01111 101100 0011100000 00 000
Q ss_pred eEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 351 RTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 351 r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
.. +..............|||+... ....+.++.|++++|.|.|
T Consensus 167 ~~--~~~g~~~~~~~d~~liNG~~~~-----------------------------------~~~~~~v~~Gk~yRlRliN 209 (536)
T PLN02792 167 KI--LDGGRKLPLMPDGVMINGQGVS-----------------------------------YVYSITVDKGKTYRFRISN 209 (536)
T ss_pred HH--hhccCcCCCCCCEEEEeccCCC-----------------------------------CcceEEECCCCEEEEEEEE
Confidence 00 0000000001123567776310 1134778899999999999
Q ss_pred CC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cceeEEe
Q 009171 431 NE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGVWNLR 497 (541)
Q Consensus 431 ~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~w~~H 497 (541)
.+ ....-|+|.||+|.|++.++... .|...|++.|.+|++..+.++++. +|.|-+.
T Consensus 210 a~~~~~~~f~i~gH~~tVI~~DG~~v-----------~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~ 267 (536)
T PLN02792 210 VGLQTSLNFEILGHQLKLIEVEGTHT-----------VQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIV 267 (536)
T ss_pred cCCCceEEEEECCcEEEEEEeCCccC-----------CCcceeEEEEccCceEEEEEEcCCCCceEEEE
Confidence 98 45689999999999999975422 244569999999999999999987 6877655
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=99.11 E-value=5.5e-09 Score=112.32 Aligned_cols=219 Identities=10% Similarity=0.071 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEE-eecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLV-EVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~vi-a~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..+++||+...|.++++.|+++++++.|.-... ..+|.||....-- ..||.+- ..-.|.||+++...+++++.
T Consensus 46 ~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~-ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~q 119 (545)
T PLN02168 46 QVIVINDMFPGPLLNATANDVINVNIFNNLTEP-FLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKDQ 119 (545)
T ss_pred EEEEECCcCCCCcEEEECCCEEEEEEEeCCCCC-ccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCCC
Confidence 578999999889999999999999999998754 4777777654222 2588653 23579999999999999645
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCC-CCCCcccccccccccccccCccCCCCCCCCCCCccccccee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPI-APTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVV 350 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~-~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 350 (541)
+|+||+|+|... .......+.|.+.+... .+.|. .+..+.+ + .+.+..... . . ...
T Consensus 120 ~GT~WYHsH~~~-Q~~~GL~G~lII~~~~~---~~~p~~~~d~e~~--l--------~l~Dw~~~~-~-~-------~~~ 176 (545)
T PLN02168 120 IGSYFYFPSLLL-QKAAGGYGAIRIYNPEL---VPVPFPKPDEEYD--I--------LIGDWFYAD-H-T-------VMR 176 (545)
T ss_pred CceEEEecChhh-hhhCcceeEEEEcCCcc---cCcCcCcccceee--E--------EEEecCCCC-H-H-------HHH
Confidence 999999999531 11122333333333221 11111 0111111 0 011100000 0 0 000
Q ss_pred eEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 351 RTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 351 r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
. .+...... .......|||+.- ....+.++.|++++|.|.|
T Consensus 177 ~--~~~~g~~~-~~~d~~liNG~~~------------------------------------~~~~~~v~~G~~yRlRiiN 217 (545)
T PLN02168 177 A--SLDNGHSL-PNPDGILFNGRGP------------------------------------EETFFAFEPGKTYRLRISN 217 (545)
T ss_pred h--hhhcCCCC-CCCCEEEEeccCC------------------------------------CcceEEeCCCCEEEEEEEe
Confidence 0 00000000 0012355676531 0124678899999999999
Q ss_pred CC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC
Q 009171 431 NE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN 490 (541)
Q Consensus 431 ~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 490 (541)
.+ ...+-|+|.||+|+|++.++... .|...|++.|.+|++..+.+++++
T Consensus 218 a~~~~~~~~~IdgH~~tVIa~DG~~v-----------~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 218 VGLKTCLNFRIQDHDMLLVETEGTYV-----------QKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred ccCCceEEEEECCcEEEEEEECCeEC-----------CCceeeEEEEcCCceEEEEEEcCC
Confidence 88 44699999999999999875322 345569999999999999999975
No 31
>PLN02991 oxidoreductase
Probab=99.08 E-value=5.4e-09 Score=112.20 Aligned_cols=222 Identities=12% Similarity=0.104 Sum_probs=138.5
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeE-EEeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLT-LVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~-via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.++++.|+++++++.|.... ...+|.||.... --..||.+. + .-.|.||+.+...+++++.
T Consensus 48 ~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~-~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sftY~F~~~~q 121 (543)
T PLN02991 48 QGILINGKFPGPDIISVTNDNLIINVFNHLDE-PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYTYALQVKDQ 121 (543)
T ss_pred EEEEEcCCCCCCcEEEECCCEEEEEecCCCCC-CccEEECCcccCCCccccCCCC----C-CCccCCCCcEEEEEEeCCC
Confidence 58999999988999999999999999999864 447777776642 234799642 2 4579999999999998646
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCC-CCCcccccccccccccccCccCCCCCCCCCCCccccccee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIA-PTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVV 350 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 350 (541)
+|+||+|+|..... .....+-|.+.+... .+.|.. ...+.. ..+.+..-.. . . ...
T Consensus 122 ~GT~WYHsH~~~q~-~~Gl~G~lIV~~~~~---~~~p~~~~d~d~~----------i~l~DW~~~~-~-~-------~~~ 178 (543)
T PLN02991 122 IGSFYYFPSLGFHK-AAGGFGAIRISSRPL---IPVPFPAPADDYT----------VLIGDWYKTN-H-K-------DLR 178 (543)
T ss_pred CcceEEecCcchhh-hCCCeeeEEEeCCcc---cCcccccccceeE----------EEecceecCC-H-H-------HHH
Confidence 99999999964221 112333333333211 111110 100100 0011100000 0 0 000
Q ss_pred eEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 351 RTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 351 r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
.. +... ..........|||+.. ...+.++.|++++|.|.|
T Consensus 179 ~~--~~~~-~~~~~~d~~liNG~~~-------------------------------------~~~~~v~~G~~yRlRiIN 218 (543)
T PLN02991 179 AQ--LDNG-GKLPLPDGILINGRGS-------------------------------------GATLNIEPGKTYRLRISN 218 (543)
T ss_pred HH--hhcC-CCCCCCCEEEEccCCC-------------------------------------CceEEECCCCEEEEEEEe
Confidence 00 0000 0000012355676531 123678899999999999
Q ss_pred CCC-CCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-ccee
Q 009171 431 NET-SVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGVW 494 (541)
Q Consensus 431 ~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~w 494 (541)
.+. ..+-|+|.||+|+|++.++.. ..|...|++.|.+|++..+.+++++ +|.|
T Consensus 219 a~~~~~~~~~idgH~~tVIa~DG~~-----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y 273 (543)
T PLN02991 219 VGLQNSLNFRIQNHTMKLVEVEGTH-----------TIQTPFSSLDVHVGQSYSVLITADQPAKDY 273 (543)
T ss_pred ccCCeeEEEEECCCEEEEEEeCCcc-----------ccceeeeEEEEcCCcEEEEEEECCCCCCcE
Confidence 984 468999999999999997532 2245679999999999999999988 5644
No 32
>PRK10883 FtsI repressor; Provisional
Probab=99.07 E-value=5.1e-09 Score=111.31 Aligned_cols=234 Identities=14% Similarity=0.143 Sum_probs=139.1
Q ss_pred EEEEEEEEEEeCCC-----------CeeeeEEEECCCCcCceEEEecCCEEEEEEEECCC-CCeeEee-CCcCCCCCCCC
Q 009171 30 SYTWTVTYGTISPF-----------GVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLD-EPFLITW-NGVKQRRTTWQ 96 (541)
Q Consensus 30 ~~~l~~~~~~~~~~-----------g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~-~~~~iH~-HG~~~~~~~~~ 96 (541)
++.|.++...+..+ |....++++||+. .|.|.|+.| ++++|+.|... ....+++ .|..... -..
T Consensus 181 d~~l~l~D~~~~~~g~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~v-Ia~ 257 (471)
T PRK10883 181 DFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHV-IAG 257 (471)
T ss_pred ceeEEeeeeeeccCCCccccccccCCccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEE-EEe
Confidence 56666666444322 3345678999984 789999875 89999999984 4567777 4543221 457
Q ss_pred CCCCC-----C-CCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeE------------EEEecCCCCCCCCCCC
Q 009171 97 DGVLG-----T-NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGA------------VNVAQRSVISVPYHIP 158 (541)
Q Consensus 97 DG~~~-----~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~~~~~~ 158 (541)
||-+. + +..|.|||+++...++ .+.+.+.+++-.......++.+. +-++...... +.
T Consensus 258 DGg~~~~P~~~~~l~l~pGeR~dvlVd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 332 (471)
T PRK10883 258 DQGFLPAPVSVKQLSLAPGERREILVDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV--- 332 (471)
T ss_pred CCCcccCCcEeCeEEECCCCeEEEEEEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---
Confidence 85422 1 4568999999999996 44567777663211111111111 1111110000 00
Q ss_pred CCceEEEEccccccCCCHHHHHHHHhcCCCCCCCCeEEEcCCCCC---ccEEEecCCEEEEEEEEcCCCCeEEEEEcCce
Q 009171 159 DGEFTLLVSDWFKNFSSHKALQKRLEDGYSLPVPDALLINGHHNS---LSFTGQKGKTYKFRVSNVGIATSINFRIQGHT 235 (541)
Q Consensus 159 ~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~lvNG~~~~---p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~ 235 (541)
....+..+...... ....... ... ....+.++|||+... +.++++.|++++|+|.|.. .+.||||+|.
T Consensus 333 ~~~~p~~l~~~~~~--~~~~~~~-~~~---~l~~~~~~INg~~~~~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~ 403 (471)
T PRK10883 333 TDNLPMRLLPDEIM--EGSPIRS-REI---SLGDDLPGINGALWDMNRIDVTAQQGTWERWTVRADM---PQAFHIEGVM 403 (471)
T ss_pred CCcCChhhcCCCCC--CCCCcce-EEE---EecCCcCccCCcccCCCcceeecCCCCEEEEEEECCC---CcCEeECCcc
Confidence 00001000000000 0000000 000 000123479999742 2468999999999998863 5799999999
Q ss_pred eEEEeecCcccce---eeeeEEEEcCCceEEEEEEeCCCCc---eeEEEEecc
Q 009171 236 LTLVEVEGAHCLQ---ESYESIDIHVGQSVAVVVAMHGPPK---DYYIVASTR 282 (541)
Q Consensus 236 ~~via~DG~~~~p---~~~d~v~l~pgeR~dv~v~~~~~~g---~~~i~~~~~ 282 (541)
|+|++.||....+ ...|+|.+. +++++++++++..+ .|.+|||..
T Consensus 404 FqVl~~~G~~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 404 FLIRNVNGAMPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred EEEEEecCCCCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccc
Confidence 9999999986544 347999994 57999999985443 799999975
No 33
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.05 E-value=1.4e-08 Score=109.94 Aligned_cols=242 Identities=12% Similarity=0.091 Sum_probs=145.8
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeC-C
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMH-G 270 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~-~ 270 (541)
..++|||+...|.|++++|+++++++.|.-......+|.||..+.- -..||.+.. ..-.|.||+.+...++++ .
T Consensus 28 ~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~Y~f~~~~~ 103 (538)
T TIGR03390 28 YSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFDYEIKPEPG 103 (538)
T ss_pred EEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEEEEEEecCC
Confidence 4899999998899999999999999999865445578888875422 236887632 123588999999988874 3
Q ss_pred CCceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCccccccee
Q 009171 271 PPKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVV 350 (541)
Q Consensus 271 ~~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~ 350 (541)
.+|+||+|+|... +.....+.|.+.+... .+... ..+.. ..+.+..-.. .+ ...
T Consensus 104 q~GT~WYHsH~~~--Q~~~l~G~lIV~~~~~---~~~~~--d~e~~----------l~l~Dw~~~~--~~-------~~~ 157 (538)
T TIGR03390 104 DAGSYFYHSHVGF--QAVTAFGPLIVEDCEP---PPYKY--DDERI----------LLVSDFFSAT--DE-------EIE 157 (538)
T ss_pred CCeeeEEecCCch--hhhcceeEEEEccCCc---cCCCc--cCcEE----------EEEeCCCCCC--HH-------HHH
Confidence 6899999999632 2222444444443211 01000 00000 0011100000 00 000
Q ss_pred eEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 351 RTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 351 r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
..+. ..............|||+.......... . ....| ....+.++.|++++|.|.|
T Consensus 158 ~~~~-~~~~~~~~~~d~~liNG~~~~~~~~~~~-----------~----------~~~~~-~~~~~~v~~G~~yRlRlIN 214 (538)
T TIGR03390 158 QGLL-STPFTWSGETEAVLLNGKSGNKSFYAQI-----------N----------PSGSC-MLPVIDVEPGKTYRLRFIG 214 (538)
T ss_pred hhhh-ccCCccCCCCceEEECCccccccccccc-----------c----------CCCCC-cceEEEECCCCEEEEEEEc
Confidence 0000 0000000111246788874221100000 0 00011 1346889999999999999
Q ss_pred CCC-CCCceeecCCc-eEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCc--------ceeEEee
Q 009171 431 NET-SVQSWHLDGSS-FYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNK--------GVWNLRS 498 (541)
Q Consensus 431 ~~~-~~HP~HlHG~~-F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnp--------G~w~~HC 498 (541)
.+. ...-|+|.||+ |+|++.++. +..|...|++.|.+|++..|.++++++ |.|.+.-
T Consensus 215 a~~~~~~~~~idgH~~~~VIa~DG~-----------~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~ 281 (538)
T TIGR03390 215 ATALSLISLGIEDHENLTIIEADGS-----------YTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQF 281 (538)
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC-----------CCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEE
Confidence 984 46899999999 999999764 234667899999999999999999863 7765553
No 34
>PLN02604 oxidoreductase
Probab=99.00 E-value=2e-09 Score=116.98 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=71.5
Q ss_pred EEecCCCcEEEEEEEcCC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 415 VIPTTLHDYVEIVFQNNE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
.+.++.|+++++.+.|.. ...|+||+||... .+. .|.. -.+......|+||++.+++|+++++|.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~--~~~---~~~D---------G~~~~tq~~i~pg~s~~y~f~~~~~Gt 121 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQ--IGT---PWFD---------GTEGVTQCPILPGETFTYEFVVDRPGT 121 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCC--CCC---cccc---------CCCccccCccCCCCeEEEEEEcCCCEE
Confidence 367889999999999996 5789999999942 111 1100 001124457899999999999999999
Q ss_pred eEEeechhhHhhcccEEEEEEecCC
Q 009171 494 WNLRSAIWERRYLGQELYLRVSNDE 518 (541)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~~~~ 518 (541)
|.||||...|...||+..+.|.+++
T Consensus 122 ~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 122 YLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEeeCcHHHHhCCCeEEEEEEecC
Confidence 9999999999999999999998764
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.97 E-value=4.1e-08 Score=106.46 Aligned_cols=256 Identities=12% Similarity=0.101 Sum_probs=145.1
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..+++||+...|.+++++|+++++++.|........||+||....- -..||.+- +..-.|.||+++...++++ .
T Consensus 21 ~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~-~ 95 (541)
T TIGR03388 21 LVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVD-R 95 (541)
T ss_pred eEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcC-C
Confidence 5799999998899999999999999999976555688998875321 12577532 2345789999999999998 5
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCcccccceee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVR 351 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r 351 (541)
+|+||+|+|.... ......+.|.+.+.... ..|.....+.. ..+.+..-.. ..+ ...
T Consensus 96 ~Gt~wyH~H~~~q-~~~Gl~G~liV~~~~~~---~~p~~~d~e~~----------l~l~Dw~~~~-~~~--------~~~ 152 (541)
T TIGR03388 96 PGTYFYHGHYGMQ-RSAGLYGSLIVDVPDGE---KEPFHYDGEFN----------LLLSDWWHKS-IHE--------QEV 152 (541)
T ss_pred CEEEEEEecchHH-hhccceEEEEEecCCCC---CCCccccceEE----------EEeecccCCC-HHH--------HHh
Confidence 9999999995311 11223344444332210 11110000100 0011100000 000 000
Q ss_pred EEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEcC
Q 009171 352 TIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQNN 431 (541)
Q Consensus 352 ~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N~ 431 (541)
...... ...........|||+.............. . .+.+.. +.........+.++.|++++|.|.|.
T Consensus 153 ~~~~~~-~~~~~~~d~~liNG~g~~~~~~~~~~~~~-~-~~~~~~---------~~~~~~~~~~~~v~~g~~~RlRliNa 220 (541)
T TIGR03388 153 GLSSKP-MRWIGEPQSLLINGRGQFNCSLAAKFSST-N-LPQCNL---------KGNEQCAPQILHVEPGKTYRLRIAST 220 (541)
T ss_pred hcccCC-CcCCCCCcceEECCCCCCCCccccccCcc-c-cchhhc---------cCCCCCCceEEEECCCCEEEEEEEcc
Confidence 000000 00000112245777532110000000000 0 000000 00000112357899999999999998
Q ss_pred C-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cc-eeEEeec
Q 009171 432 E-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KG-VWNLRSA 499 (541)
Q Consensus 432 ~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG-~w~~HCH 499 (541)
+ ...+-|+|+||+|+|++.++... .|..-|.+.|.+|+++.|.++++. +| .|-++--
T Consensus 221 ~~~~~~~~~id~h~~~VIa~DG~~v-----------~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~ 280 (541)
T TIGR03388 221 TALAALNFAIEGHKLTVVEADGNYV-----------EPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVG 280 (541)
T ss_pred cccceEEEEECCCEEEEEEeCCEec-----------ccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEe
Confidence 7 67899999999999999976432 355679999999999999999975 54 6666543
No 36
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.97 E-value=4.8e-08 Score=105.66 Aligned_cols=236 Identities=11% Similarity=0.138 Sum_probs=141.4
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.++++.|+++++++.|.... ...+|.||..+.. -..||.+ . ..-.|.||+.+...+++++.
T Consensus 49 ~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~---~--TQcPI~PG~sftY~F~~~dq 122 (596)
T PLN00044 49 EAIGINGQFPGPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVG---G--TNCAIPAGWNWTYQFQVKDQ 122 (596)
T ss_pred EEEEEcCcCCCCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCC---C--CcCCcCCCCcEEEEEEeCCC
Confidence 47999999988999999999999999999875 4478888875433 2479853 2 33689999999999999656
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCC-CC-CcccccccccccccccCccCCCCCCCCCCCcccccce
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIA-PT-YHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKV 349 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~-p~-~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~ 349 (541)
+|+||.|+|..... .....+-|.+.+... .+.|.. +. .+.. ..+.+.-... .. ..
T Consensus 123 ~GT~WYHsH~~~Q~-~~Gl~GalII~~~~~---~~~P~~~~~~~e~~----------i~l~DW~~~~--~~-------~~ 179 (596)
T PLN00044 123 VGSFFYAPSTALHR-AAGGYGAITINNRDV---IPIPFGFPDGGDIT----------LFIADWYARD--HR-------AL 179 (596)
T ss_pred CceeEeeccchhhh-hCcCeeEEEEcCccc---ccccccCCcccceE----------EEecccccCC--HH-------HH
Confidence 99999999954211 122333333333211 011110 00 0000 0011100000 00 00
Q ss_pred eeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEE
Q 009171 350 VRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQ 429 (541)
Q Consensus 350 ~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~ 429 (541)
.+.+..... ........|||+.-.......+ + ......++.++.|++++|.|.
T Consensus 180 ~~~l~~g~~---~~~~d~~lING~g~~~~n~~~~-------------------~-----~~~~~~~i~V~~Gk~yRlRiI 232 (596)
T PLN00044 180 RRALDAGDL---LGAPDGVLINAFGPYQYNDSLV-------------------P-----PGITYERINVDPGKTYRFRVH 232 (596)
T ss_pred HHHHhcCCC---CCCCCceEEcccCccccCCccc-------------------c-----CCCccceEEECCCCEEEEEEE
Confidence 000000000 0001123466642100000000 0 001123688999999999999
Q ss_pred cCC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCc-c--eeE
Q 009171 430 NNE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNK-G--VWN 495 (541)
Q Consensus 430 N~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnp-G--~w~ 495 (541)
|.+ ...--|+|-||+|.|++.++.. ..|...|++.|.+|++..+.++++.+ | -||
T Consensus 233 Naa~~~~~~fsIdgH~mtVIa~DG~~-----------v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 233 NVGVATSLNFRIQGHNLLLVEAEGSY-----------TSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred EccCCceEEEEECCCEEEEEEeCCcc-----------cCceeeeeEEEcCCceEEEEEECCCCCCCceEE
Confidence 987 5678899999999999997422 24667799999999999999999874 5 365
No 37
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.92 E-value=2.6e-08 Score=106.14 Aligned_cols=227 Identities=14% Similarity=0.113 Sum_probs=142.3
Q ss_pred CeeeeEEEECCCCcCceEEEecCCEEEEEEEECC-CCCeeEeeCCcCCCCCCCCCCCC----CC-CCccCCCCeEEEEEE
Q 009171 44 GVPQQGILINGQFPGPAIEAVTNDNIIVNLINKL-DEPFLITWNGVKQRRTTWQDGVL----GT-NCPIPPNSNWTYKFQ 117 (541)
Q Consensus 44 g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~-q~~i~pG~~~~y~f~ 117 (541)
|.......+||+. -|. .+.++..+++|+.|.. .....+++.|.+... -..||.+ .+ +..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~-~p~-~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPF-KAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cce-eecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455566677742 344 4455555999999998 556677776655443 4567765 34 668999999999999
Q ss_pred ecCCceeeEEcCCchhhhhcceeeEEEEecCCCCC-CCC------CCCC---CceEEEEccccccCCCHHHHHHHHhcC-
Q 009171 118 MKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSVIS-VPY------HIPD---GEFTLLVSDWFKNFSSHKALQKRLEDG- 186 (541)
Q Consensus 118 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~-~~~------~~~~---~e~~l~l~d~~~~~~~~~~~~~~~~~~- 186 (541)
.+ ..|++-+.|.. .+..+-+.+..-........ ..+ ...+ ............+. . ........
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~--~~~~~~~~l 336 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEP--G--PNRDTDFHL 336 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCC--c--ccccccchh
Confidence 64 47899898876 22223233332221111000 000 0001 11111111111110 0 00000000
Q ss_pred CCCCCCCeEEEcCCCCC---ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCccc---ceeeeeEEEEcCCc
Q 009171 187 YSLPVPDALLINGHHNS---LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHC---LQESYESIDIHVGQ 260 (541)
Q Consensus 187 ~~~~~~~~~lvNG~~~~---p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~---~p~~~d~v~l~pge 260 (541)
........+.+||+... ..+.++.|+++||+|.|-+. -.+.||+||+.|.|++.| ... .+..+|++.+.|++
T Consensus 337 ~~~~~~~~~~~n~~~~~~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~~~~ 414 (451)
T COG2132 337 IGGIGGYVWAINGKAFDDNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVAPGE 414 (451)
T ss_pred hcccccccccccCccCCCCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeCCCe
Confidence 01112356889998753 46789999999999999998 667999999999999999 332 34678999999999
Q ss_pred eEEEEEEeCCCCceeEEEEecc
Q 009171 261 SVAVVVAMHGPPKDYYIVASTR 282 (541)
Q Consensus 261 R~dv~v~~~~~~g~~~i~~~~~ 282 (541)
|+.+.++++ .+|.|.+|||..
T Consensus 415 ~~~v~~~a~-~~g~~~~HCH~l 435 (451)
T COG2132 415 RLLVRFDAD-YPGPWMFHCHIL 435 (451)
T ss_pred EEEEEEeCC-CCCceEEeccch
Confidence 999999999 688999999975
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.90 E-value=1.8e-09 Score=95.76 Aligned_cols=90 Identities=20% Similarity=0.247 Sum_probs=73.2
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCC-------------CCC--CCccCCCCeEEEEEEecCCc
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGV-------------LGT--NCPIPPNSNWTYKFQMKDQI 122 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~-------------~~~--q~~i~pG~~~~y~f~~~~~~ 122 (541)
.+.++++.|+.+++.+.|.....+.+|+||.........++. +.. -..|.||+..+.+|.. +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 568999999999999999999999999999986422111111 111 2358899999999997 689
Q ss_pred eeeEEcCCchhhhhcceeeEEEEecC
Q 009171 123 GTFNYFPSTKVHRAFGGFGAVNVAQR 148 (541)
Q Consensus 123 Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (541)
|.|.||||...+...||.+.+.|.+.
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 99999999999999999999999863
No 39
>PLN02191 L-ascorbate oxidase
Probab=98.78 E-value=3.5e-07 Score=99.54 Aligned_cols=254 Identities=12% Similarity=0.127 Sum_probs=142.5
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEE-EeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTL-VEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.++++.|+++++++.|.-......+|.||....- -..||.+- +..-.|.||+.+...++++ .
T Consensus 43 ~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~g----vtq~pI~PG~s~~Y~f~~~-~ 117 (574)
T PLN02191 43 AVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAG----VTQCAINPGETFTYKFTVE-K 117 (574)
T ss_pred eEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCc----cccCCcCCCCeEEEEEECC-C
Confidence 5899999998899999999999999999866555678888875421 12577642 2235699999999999998 5
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCcccccccccccccccCccCCCCCCCCCCCcccccceee
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIHWSMKQARTIRTNLTANAARPNPQGSFHYGTIKVVR 351 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~l~~~l~~~~~~p~p~~~~~~~~~~~~r 351 (541)
+|+||+|+|.... ......+.|.++....+. .+.....+.. ..+.+..-...+.. ..
T Consensus 118 ~GT~wYHsH~~~q-~~~Gl~G~liV~~~~~~~---~~~~~d~e~~----------l~l~Dw~~~~~~~~---------~~ 174 (574)
T PLN02191 118 PGTHFYHGHYGMQ-RSAGLYGSLIVDVAKGPK---ERLRYDGEFN----------LLLSDWWHESIPSQ---------EL 174 (574)
T ss_pred CeEEEEeeCcHHH-HhCCCEEEEEEccCCCCC---CCCCCCeeEE----------EeeeccccCChHHH---------HH
Confidence 9999999996321 112233444443321111 0110001100 00111000000000 00
Q ss_pred EEEEec-cccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEEEEEEc
Q 009171 352 TIVLAN-SATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVEIVFQN 430 (541)
Q Consensus 352 ~~~l~~-~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve~vi~N 430 (541)
.+.. ............|||+.-........... + ...+ .+.... ++ . ....++.++.|++.+|.|.|
T Consensus 175 --~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~-----~-~~~~-~~~~~~-n~-~-~~p~~~~v~~G~~yRlRiIN 242 (574)
T PLN02191 175 --GLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSN-----G-TELP-MCTFKE-GD-Q-CAPQTLRVEPNKTYRIRLAS 242 (574)
T ss_pred --hhccCCCCcCCCCCceEECCCCCCCCcccccccC-----C-cccc-cceecc-CC-C-CCceEEEEcCCCEEEEEEEe
Confidence 0000 00000001124566643111000000000 0 0000 000000 00 0 11226899999999999999
Q ss_pred CC-CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cc-eeEEe
Q 009171 431 NE-TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KG-VWNLR 497 (541)
Q Consensus 431 ~~-~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG-~w~~H 497 (541)
.+ ...+-|+|.||+|.|++.++.. ..|...|++.|.+|++..|.++++. +| .|-++
T Consensus 243 a~~~~~~~~~idgH~~tVIa~DG~~-----------v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ir 301 (574)
T PLN02191 243 TTALASLNLAVQGHKLVVVEADGNY-----------ITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYIS 301 (574)
T ss_pred cCCceeEEEEECCCeEEEEEcCCee-----------ccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEE
Confidence 87 6689999999999999997542 2456779999999999999999987 54 44444
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.69 E-value=4.2e-08 Score=84.04 Aligned_cols=90 Identities=17% Similarity=0.160 Sum_probs=68.6
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cc
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KG 492 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG 492 (541)
+++.++.|+.|++.+.|.....+.+|+||...- ...+....+ .. -.-.|.||+..+.+|+++. +|
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~-----~~~~~DG~~--~~-------~~~~i~pG~~~~Y~~~~~~~~G 91 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQP-----PSPWMDGVP--GV-------TQCPIAPGESFTYEFTANQQAG 91 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBST-----TGGGGSGGT--TT-------SGSSBSTTEEEEEEEEESSCSE
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeee-----eeeecCCcc--cc-------cceeEEeecceeeeEeeecccc
Confidence 357889999999999999999999999996531 111110000 00 0124788999999999998 99
Q ss_pred eeEEeechhhHhhcccEEEEEEecC
Q 009171 493 VWNLRSAIWERRYLGQELYLRVSND 517 (541)
Q Consensus 493 ~w~~HCHil~H~d~GMm~~~~V~~~ 517 (541)
.|.||||...|...||...+.|.++
T Consensus 92 t~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 92 TYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999999878999999988764
No 41
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.58 E-value=1e-07 Score=80.05 Aligned_cols=70 Identities=14% Similarity=0.248 Sum_probs=46.3
Q ss_pred ceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcc
Q 009171 59 PAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFG 138 (541)
Q Consensus 59 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (541)
.+|++++|+.|+|+++|.....+.+...++.. ...|.||++.++.|. +.++|+|=|+|-.+..
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~-~~~~G~y~~~C~~~~~---- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFT-PLKPGEYEFYCTMHPN---- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEE-E-S-EEEEEB-SSS-T----
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEc-CCCCEEEEEEcCCCCc----
Confidence 58999999999999999987777776666422 246899999999998 5789999999997762
Q ss_pred eeeEEEE
Q 009171 139 GFGAVNV 145 (541)
Q Consensus 139 l~G~liV 145 (541)
|.|-|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6677765
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.57 E-value=9.2e-07 Score=76.04 Aligned_cols=74 Identities=22% Similarity=0.484 Sum_probs=55.3
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhc
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAF 137 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (541)
-+.|++++||+| +++|....++++.+.|.... ... ...+.||+++++.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~~--~~~------~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAKEL--SHK------DLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCccc--ccc------ccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 378999999985 56788777788776643110 011 1247899999999972 899999997 55668
Q ss_pred ceeeEEEEe
Q 009171 138 GGFGAVNVA 146 (541)
Q Consensus 138 Gl~G~liV~ 146 (541)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.56 E-value=7.4e-06 Score=87.97 Aligned_cols=227 Identities=15% Similarity=0.206 Sum_probs=142.8
Q ss_pred CeEEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCcee-EEEeecCcccceeeeeEEEEcCCceEEEEEEeCCC
Q 009171 193 DALLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTL-TLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGP 271 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~-~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~ 271 (541)
..++|||+...|.+.++.|+++.++++|-.. ..+.+|.+|... .--..||.++ ..=.|.|||.+-.-++.++.
T Consensus 48 ~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~q 121 (563)
T KOG1263|consen 48 QVITINGQFPGPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKDQ 121 (563)
T ss_pred eeEeecCCCCCCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCCc
Confidence 5789999998899999999999999999965 566777777533 2334499433 23358899999999999977
Q ss_pred CceeEEEEeccccCCCcceEEEEEecCCCCCCCCCCCCCCCCccc-----cccc-ccccccccCccCCCCCCCCCCCccc
Q 009171 272 PKDYYIVASTRFTKPILTTTAILHYDGSNTPPSLPLPIAPTYHIH-----WSMK-QARTIRTNLTANAARPNPQGSFHYG 345 (541)
Q Consensus 272 ~g~~~i~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~-----~~~~-~~~~l~~~l~~~~~~p~p~~~~~~~ 345 (541)
.|+||.++|.........-.+++.+.-...+ .+.+ .|..+.. |-.+ ..+.++..+......|.
T Consensus 122 ~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p--~pf~-~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~-------- 190 (563)
T KOG1263|consen 122 IGTLWYHSHVSWQRATGVFGALIINPRPGLP--VPFP-KPDKEFTILLGDWYKNLNHKNLKNFLDRTGALPN-------- 190 (563)
T ss_pred ceeEEEeeccccccccCceeEEEEcCCccCC--CCCC-CCCceeEEEeEeeccccCHHHHHHhhccCCCCCC--------
Confidence 9999999997533222122333333322111 1111 1211111 1110 11111111110000010
Q ss_pred ccceeeEEEEeccccccCCEEEEEEcCeeeeCCCCccccccccCCCcccccCCCCCCCCCCCCCCCceeEEecCCCcEEE
Q 009171 346 TIKVVRTIVLANSATKINNKLRYAVNGISYVNPITPLKLADWFNIPGVFDLNTIKDTPTPGAPAKLGASVIPTTLHDYVE 425 (541)
Q Consensus 346 ~~~~~r~~~l~~~~~~~~g~~~~~iNg~~f~~~~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ve 425 (541)
..-...|||... ....|...+++..|++..
T Consensus 191 ------------------~~D~~~iNg~~g--------------------------------~~~~~~~~l~v~pGktY~ 220 (563)
T KOG1263|consen 191 ------------------PSDGVLINGRSG--------------------------------FLYNCTPTLTVEPGKTYR 220 (563)
T ss_pred ------------------CCCceEECCCCC--------------------------------cccCceeEEEEcCCCEEE
Confidence 011245777651 122446778999999999
Q ss_pred EEEEcCC--CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC-cce-eEEee
Q 009171 426 IVFQNNE--TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN-KGV-WNLRS 498 (541)
Q Consensus 426 ~vi~N~~--~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn-pG~-w~~HC 498 (541)
|.|.|.+ ...+ |.|=+|...||+.++-. ..|.--|++.|-+|++..+..++|. ++. |+-=|
T Consensus 221 lRiiN~g~~~~l~-F~I~~H~ltvVe~Dg~y-----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~ 285 (563)
T KOG1263|consen 221 LRIINAGLNTSLN-FSIANHQLTVVEVDGAY-----------TKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAAS 285 (563)
T ss_pred EEEEccccccceE-EEECCeEEEEEEecceE-----------EeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEE
Confidence 9999987 3444 99999999999996422 1244569999999999999999987 664 44433
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.29 E-value=3.6e-06 Score=69.91 Aligned_cols=82 Identities=16% Similarity=0.297 Sum_probs=57.1
Q ss_pred cCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC---CCccCCCCeEEEEEEecCCceeeEEcCCchh
Q 009171 57 PGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT---NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKV 133 (541)
Q Consensus 57 pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~---q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 133 (541)
--..|+|++||+| +++|....++++.++...... ...+..+.. ...+.||+++++.|.. +|+|.|||. .
T Consensus 15 ~P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~ 86 (99)
T TIGR02656 15 EPAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPA-GVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--P 86 (99)
T ss_pred eCCEEEECCCCEE--EEEECCCCCceEEECCCCCcc-chhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--C
Confidence 3468999999985 566877677777776532211 011111111 2346899999998872 999999998 6
Q ss_pred hhhcceeeEEEEe
Q 009171 134 HRAFGGFGAVNVA 146 (541)
Q Consensus 134 q~~~Gl~G~liV~ 146 (541)
+...||.|.|+|+
T Consensus 87 H~~aGM~G~I~V~ 99 (99)
T TIGR02656 87 HRGAGMVGKITVE 99 (99)
T ss_pred ccccCCEEEEEEC
Confidence 8888999999985
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.12 E-value=8.9e-06 Score=73.89 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=77.6
Q ss_pred ceeEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCC
Q 009171 412 GASVIPTTLHDYVEIVFQNNET-SVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDN 490 (541)
Q Consensus 412 ~~~~~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dn 490 (541)
....+.++.|+++.|.|.|.+. ..+.|++.||+|+|++.++.... |...|++.|.+|+.+.+.++++.
T Consensus 58 ~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~-----------p~~~~~l~l~~G~R~dvlv~~~~ 126 (159)
T PF00394_consen 58 EPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVE-----------PYKVDTLVLAPGQRYDVLVTADQ 126 (159)
T ss_dssp TSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEE-----------EEEESBEEE-TTEEEEEEEEECS
T ss_pred ccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEeeecccccc-----------ccccceEEeeCCeEEEEEEEeCC
Confidence 3457889999999999999884 58999999999999999754322 55779999999999999999988
Q ss_pred -cceeEEee----chhhHhhcccEEEEEEec
Q 009171 491 -KGVWNLRS----AIWERRYLGQELYLRVSN 516 (541)
Q Consensus 491 -pG~w~~HC----Hil~H~d~GMm~~~~V~~ 516 (541)
+|.|.+++ +...+...++...+.+.+
T Consensus 127 ~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 127 PPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 99999999 666778888888776543
No 46
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.08 E-value=1.4e-05 Score=85.56 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=69.1
Q ss_pred EEeCCCCeeee--EEEECCCCcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEE
Q 009171 38 GTISPFGVPQQ--GILINGQFPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYK 115 (541)
Q Consensus 38 ~~~~~~g~~~~--~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~ 115 (541)
..+..+|.+.. +.+..-.|--+.|+|++||+|.++++|.-...=.+ ||...... +++.-+.||++.+..
T Consensus 532 ~~v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~-------nI~~dv~PG~t~svt 602 (635)
T PRK02888 532 SKVIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY-------GVNMEVAPQATASVT 602 (635)
T ss_pred cceEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc-------CccEEEcCCceEEEE
Confidence 44566775544 44555566556899999999999999953211111 56544211 112457899999999
Q ss_pred EEecCCceeeEEcCCch-hhhhcceeeEEEEecC
Q 009171 116 FQMKDQIGTFNYFPSTK-VHRAFGGFGAVNVAQR 148 (541)
Q Consensus 116 f~~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~~ 148 (541)
|++ +++|.|||||..- ...-.+|.|.++|+++
T Consensus 603 F~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 603 FTA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred EEc-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 995 8899999999874 1122389999999873
No 47
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.06 E-value=7.5e-06 Score=68.02 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=54.1
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCC-CCCCC-CCccCCCCeEEEEEEecCCceeeEEcCCchhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQD-GVLGT-NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHR 135 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~D-G~~~~-q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 135 (541)
-+.|++++||+| ++.|....++++.+=--........+ ..+.- ...+.||+++++.|+ .+|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC-C-Cc
Confidence 478999999985 56776556666655221000000000 00000 124789999999998 5999999998 4 88
Q ss_pred hcceeeEEEEe
Q 009171 136 AFGGFGAVNVA 146 (541)
Q Consensus 136 ~~Gl~G~liV~ 146 (541)
..||.|.|+|+
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 89999999995
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.99 E-value=3.5e-05 Score=61.73 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhc
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAF 137 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~ 137 (541)
-+.|++++||+| ++.|....++++++...... ..+-. ...+.||+++++.|+ ++|+|-|||-.|-
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~---~~~~~---~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLG---EAALK---GPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCc---ccccc---ccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 468999999996 56888777888887643110 11100 123578888887775 5999999998765
Q ss_pred ceeeEEEEe
Q 009171 138 GGFGAVNVA 146 (541)
Q Consensus 138 Gl~G~liV~ 146 (541)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 499999985
No 49
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.97 E-value=3.5e-05 Score=68.66 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=58.5
Q ss_pred eEEecCCCcEEEEEEEcCCC-CCCceeecCCceEEEEecccccCccccccCcCC-CCCccceEEeCC---C--CEEEEEE
Q 009171 414 SVIPTTLHDYVEIVFQNNET-SVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLN-DAITRHTVQVYP---Q--SWSAIYV 486 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~-~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~-~p~~rDTv~vpp---~--g~~~irf 486 (541)
+.+.++.|+.|++.+.|... ..|.|-||.+.- .+... + ... .+..-..-.+|+ + ++..+.|
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~--------~~~~~-p---~mdG~~~~~~~~i~p~~~~g~~~~~~~tf 119 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGP--------PYPYM-P---GMDGLGFVAGTGFLPPPKSGKFGYTDFTY 119 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCCCccccEEeecCCC--------ccccc-c---ccCCCCccccCcccCCCCCCccceeEEEE
Confidence 35788999999999999864 667777764321 11000 0 000 011111122222 2 2468899
Q ss_pred EcCCcceeEEeechhhHhhcccEEEEEE
Q 009171 487 SLDNKGVWNLRSAIWERRYLGQELYLRV 514 (541)
Q Consensus 487 ~~dnpG~w~~HCHil~H~d~GMm~~~~V 514 (541)
+|+.+|.|.||||+..|...||...+.|
T Consensus 120 ~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 120 HFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred ECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 9999999999999999999999999877
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.83 E-value=0.0004 Score=62.15 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=70.5
Q ss_pred EEEECCCCcC-ceEEEecCCEEEEEEEECCCCCeeEeeCCcCCC----CCCCCCCC----CCCC------CccCCCCeEE
Q 009171 49 GILINGQFPG-PAIEAVTNDNIIVNLINKLDEPFLITWNGVKQR----RTTWQDGV----LGTN------CPIPPNSNWT 113 (541)
Q Consensus 49 ~~~~Ng~~pG-P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~----~~~~~DG~----~~~q------~~i~pG~~~~ 113 (541)
.+-|||+-.| ++|.+..|-+|.|+|+|.-..++++-.-=-..+ .....||. +|.. ..|.+|++..
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 3677887665 699999999999999999766655544111110 11234554 2221 2356788855
Q ss_pred EEEEecCCceeeEEcCCchhhhhcceeeEEEEecC
Q 009171 114 YKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQR 148 (541)
Q Consensus 114 y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (541)
=.|. +-++|+|||-|-.-.|...||+|-+||-+.
T Consensus 154 g~~~-~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 154 GWWN-DTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEec-cCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 5555 568999999999999999999999999874
No 51
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.77 E-value=0.00034 Score=64.01 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=71.5
Q ss_pred eEEEECCCCc-CceEEEecCCEEEEEEEECCCCCeeEeeC--CcCC--CCCCCCCCC----CCC------CCccCCCCeE
Q 009171 48 QGILINGQFP-GPAIEAVTNDNIIVNLINKLDEPFLITWN--GVKQ--RRTTWQDGV----LGT------NCPIPPNSNW 112 (541)
Q Consensus 48 ~~~~~Ng~~p-GP~i~v~~Gd~v~v~~~N~l~~~~~iH~H--G~~~--~~~~~~DG~----~~~------q~~i~pG~~~ 112 (541)
..+.|||..- -++|.+..|-+|.|+|+|.-..++++-.- +..+ ...-..||. +|. ...|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 4678888754 46999999999999999986544433221 1111 112334443 111 2357899999
Q ss_pred EEEEEecCCceeeEEcCCchhhhhcceeeEEEEecC
Q 009171 113 TYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQR 148 (541)
Q Consensus 113 ~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (541)
.-.|. +-++|.|||-|-.-.|...||++-|+|.+.
T Consensus 154 ~~~~~-~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 154 SGVYN-DLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eEEEc-cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 87775 357999999999999999999999999984
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.56 E-value=0.0003 Score=58.36 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=58.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
..+.++.|++|+|+ |.+...|-+.++...+..-.. .+ ......+++.+.||+...+.|.. ||.
T Consensus 17 ~~i~v~~G~~V~~~--N~~~~~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~--~G~ 79 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKGGPHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST--PGT 79 (99)
T ss_pred CEEEECCCCEEEEE--ECCCCCceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC--CEE
Confidence 35789999998885 777788888876443211100 00 00123467888999988776654 999
Q ss_pred eEEeechhhHhhcccEEEEEEe
Q 009171 494 WNLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (541)
|.|||- -|...||...+.|.
T Consensus 80 y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 80 YTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEEcC--CccccCCEEEEEEC
Confidence 999998 59999999999873
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.53 E-value=0.00048 Score=58.55 Aligned_cols=75 Identities=16% Similarity=0.201 Sum_probs=51.0
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEee-CCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITW-NGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRA 136 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~ 136 (541)
-..|.|++||+|+....|. ++++.+ .+. .-+|... ..-.+|+++++.|+ .+|+|-|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~------~p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGM------IPEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCC------CcCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 3589999999976666654 455554 221 1122211 12245777776664 5999999997 6788
Q ss_pred cceeeEEEEecC
Q 009171 137 FGGFGAVNVAQR 148 (541)
Q Consensus 137 ~Gl~G~liV~~~ 148 (541)
.||.|.|+|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 999999999885
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.52 E-value=0.00042 Score=59.51 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=56.0
Q ss_pred ceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcc
Q 009171 59 PAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFG 138 (541)
Q Consensus 59 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~G 138 (541)
-+|+|++||+ |++.|.....++++.-+.. ..+|.- .....+|+++++.|. .+|+|-|+|-. |...|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~-----~~~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM-----DPEGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC-----Cccccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 3799999999 7889998878888776652 112221 233455688888776 39999999975 67889
Q ss_pred eeeEEEEec
Q 009171 139 GFGAVNVAQ 147 (541)
Q Consensus 139 l~G~liV~~ 147 (541)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.37 E-value=0.00077 Score=58.31 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=50.1
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|+.|+|++.|.+...|.+-++++. -...|+||++..++|.++.||.|
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~g---------------------------is~~I~pGet~TitF~adKpG~Y 114 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSIDAYG---------------------------ISEVIKAGETKTISFKADKAGAF 114 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEECCCC---------------------------cceEECCCCeEEEEEECCCCEEE
Confidence 477999999999999999888887777541 13457889999999999999999
Q ss_pred EEeech
Q 009171 495 NLRSAI 500 (541)
Q Consensus 495 ~~HCHi 500 (541)
.|||-.
T Consensus 115 ~y~C~~ 120 (135)
T TIGR03096 115 TIWCQL 120 (135)
T ss_pred EEeCCC
Confidence 999987
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.14 E-value=0.0026 Score=53.94 Aligned_cols=73 Identities=21% Similarity=0.223 Sum_probs=50.7
Q ss_pred CceEEEecCCEEEEEEEECC-CCCeeEeeCCcCCCCCCCCC-CCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKL-DEPFLITWNGVKQRRTTWQD-GVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHR 135 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l-~~~~~iH~HG~~~~~~~~~D-G~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~ 135 (541)
-+.|+|++||+|+ ++|.. ..++++..-+ . ...| + .....+|++|++.|. ++|+|-|+|-. |.
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~-~~f~s~----~~~~~~G~t~s~Tf~---~~G~Y~Y~C~p--H~ 104 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----D-GDLDES----ERVSEEGTTYEHTFE---EPGIYLYVCVP--HE 104 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECC----C-CCcccc----ccccCCCCEEEEEec---CCcEEEEEccC--CC
Confidence 3579999999955 77543 4566665421 0 0111 1 123578999999996 49999999974 56
Q ss_pred hcceeeEEEEe
Q 009171 136 AFGGFGAVNVA 146 (541)
Q Consensus 136 ~~Gl~G~liV~ 146 (541)
..||.|.|+|+
T Consensus 105 ~~gM~G~I~V~ 115 (115)
T TIGR03102 105 ALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEEC
Confidence 77899999985
No 57
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.64 E-value=0.0051 Score=51.45 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=43.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|+.+.+++.|.+...|-|.+-+. .-...|+||+..++.|.++.||.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~---------------------------~~~~~l~~g~~~~~~f~~~~~G~y 88 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL---------------------------GISKVLPPGETATVTFTPLKPGEY 88 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG---------------------------TEEEEE-TT-EEEEEEEE-S-EEE
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC---------------------------ceEEEECCCCEEEEEEcCCCCEEE
Confidence 47889999899999999877776666540 123778899999999999999999
Q ss_pred EEeechhhHhh
Q 009171 495 NLRSAIWERRY 505 (541)
Q Consensus 495 ~~HCHil~H~d 505 (541)
-|+|-+ |.+
T Consensus 89 ~~~C~~--~~~ 97 (104)
T PF13473_consen 89 EFYCTM--HPN 97 (104)
T ss_dssp EEB-SS--S-T
T ss_pred EEEcCC--CCc
Confidence 999997 554
No 58
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.56 E-value=0.016 Score=47.92 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=54.9
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
..+.++.|++|.|+.. +...|.+.+=- +. +........ .+..-.+..+.+|+...+.|. .+|.
T Consensus 17 ~~i~V~~G~tV~~~n~--~~~~Hnv~~~~--------~~--~~~~~~~~~---~~~~~~~~~~~~G~~~~~tF~--~~G~ 79 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNN--DSMPHNVVFVA--------DG--MPAGADSDY---VPPGDSSPLLAPGETYSVTFT--KPGT 79 (99)
T ss_dssp SEEEEETTEEEEEEEE--SSSSBEEEEET--------TS--SHTTGGHCH---HSTTCEEEEBSTTEEEEEEEE--SSEE
T ss_pred CEEEECCCCEEEEEEC--CCCCceEEEec--------cc--ccccccccc---cCccccceecCCCCEEEEEeC--CCeE
Confidence 4578899999888554 55677765532 11 110000000 001115677888988777766 9999
Q ss_pred eEEeechhhHhhcccEEEEEEe
Q 009171 494 WNLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 494 w~~HCHil~H~d~GMm~~~~V~ 515 (541)
|.|+|- - |...||-..+.|+
T Consensus 80 y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 80 YEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEET-T-TGGTTSEEEEEEE
T ss_pred EEEEcC-C-CcccCCEEEEEEC
Confidence 999999 4 9999999999884
No 59
>PRK02710 plastocyanin; Provisional
Probab=95.89 E-value=0.03 Score=48.00 Aligned_cols=72 Identities=17% Similarity=0.142 Sum_probs=50.6
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|++|+| .|.+...|.+.+.+.. .+ ......+.||+...+.|.. ||.|
T Consensus 48 ~i~v~~Gd~V~~--~N~~~~~H~v~~~~~~---------~~--------------~~~~~~~~pg~t~~~tF~~--~G~y 100 (119)
T PRK02710 48 TLTIKAGDTVKW--VNNKLAPHNAVFDGAK---------EL--------------SHKDLAFAPGESWEETFSE--AGTY 100 (119)
T ss_pred EEEEcCCCEEEE--EECCCCCceEEecCCc---------cc--------------cccccccCCCCEEEEEecC--CEEE
Confidence 367889999887 4777778888654211 00 0112346788877666554 9999
Q ss_pred EEeechhhHhhcccEEEEEEe
Q 009171 495 NLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (541)
.|+|= -|...||-..+.|+
T Consensus 101 ~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 101 TYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEcC--CCccCCcEEEEEEC
Confidence 99997 59899999999873
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.80 E-value=0.034 Score=60.23 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=56.4
Q ss_pred EEecCCCcEEEEEEEcCC---CCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCc
Q 009171 415 VIPTTLHDYVEIVFQNNE---TSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNK 491 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~---~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnp 491 (541)
.+.++.|+.|.+.+.|.. +..|-|-|-++.. -+.+.||....+.|+++.|
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~adkP 608 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTADKP 608 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc---------------------------cEEEcCCceEEEEEEcCCC
Confidence 477899999999999964 5677777643221 1346688999999999999
Q ss_pred ceeEEeechhhH-hhcccEEEEEEec
Q 009171 492 GVWNLRSAIWER-RYLGQELYLRVSN 516 (541)
Q Consensus 492 G~w~~HCHil~H-~d~GMm~~~~V~~ 516 (541)
|.|.+||...-| .|.+|...+.|++
T Consensus 609 Gvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 609 GVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEEECCcccccCcccceEEEEEEe
Confidence 999999987533 2458888887754
No 61
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.74 E-value=0.082 Score=46.54 Aligned_cols=89 Identities=12% Similarity=0.157 Sum_probs=65.8
Q ss_pred CCcCceEEEecCCEEEEEEEECCC--CCeeEe---------eCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCce
Q 009171 55 QFPGPAIEAVTNDNIIVNLINKLD--EPFLIT---------WNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIG 123 (541)
Q Consensus 55 ~~pGP~i~v~~Gd~v~v~~~N~l~--~~~~iH---------~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~G 123 (541)
.+++-.+.++.|++++..++|.-. ...++- .|.... +.+++--.-...+.||++-...|.. .++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~f-t~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVF-TGAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEe-cCCc
Confidence 357778999999999999999852 222221 233322 2344421114568999999999997 5799
Q ss_pred eeEEcCCchhhhhcceeeEEEEec
Q 009171 124 TFNYFPSTKVHRAFGGFGAVNVAQ 147 (541)
Q Consensus 124 t~wYH~H~~~q~~~Gl~G~liV~~ 147 (541)
.|-+-|-...++..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.59 E-value=0.046 Score=46.48 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCEEEEEEEcCCcceeEEeechhhHhhcccEEEEEEecCCcccc
Q 009171 478 PQSWSAIYVSLDNKGVWNLRSAIWERRYLGQELYLRVSNDERSLF 522 (541)
Q Consensus 478 p~g~~~irf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~~~~~~ 522 (541)
+++. +.++|+.+|.|-|+|=. |...||-..+.|.++...++
T Consensus 54 ~g~~--~~~tF~~~G~Y~Y~C~p--H~~~GM~G~V~Vg~~~~n~~ 94 (116)
T TIGR02375 54 INEE--YTVTVTEEGVYGVKCTP--HYGMGMVALIQVGDPPANLD 94 (116)
T ss_pred CCCE--EEEEeCCCEEEEEEcCC--CccCCCEEEEEECCCCcCHH
Confidence 4544 55666889999999995 99999999999988654443
No 63
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=95.40 E-value=0.079 Score=42.21 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=46.8
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.+..|++|.| .|.+...|-++++...+ +.. .+. .-.+.++. .++++++.||.|
T Consensus 12 ~i~v~~GdtVt~--~N~d~~~Hnv~~~~g~~-------~~~-------------~~~-~~~~~~g~--~~~~tf~~~G~y 66 (83)
T TIGR02657 12 ELHVKVGDTVTW--INREAMPHNVHFVAGVL-------GEA-------------ALK-GPMMKKEQ--AYSLTFTEAGTY 66 (83)
T ss_pred EEEECCCCEEEE--EECCCCCccEEecCCCC-------ccc-------------ccc-ccccCCCC--EEEEECCCCEEE
Confidence 477899999887 67777889988753221 000 011 11234555 445677889999
Q ss_pred EEeechhhHhhcccEEEEEE
Q 009171 495 NLRSAIWERRYLGQELYLRV 514 (541)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V 514 (541)
.|||=+ |. .|-..+.|
T Consensus 67 ~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 67 DYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEcCC--CC--CCeEEEEE
Confidence 999998 55 58777776
No 64
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.12 E-value=0.5 Score=48.56 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=52.3
Q ss_pred CcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC--CCccCCCCeEEEEEEecCCceeeEEcCCchh
Q 009171 56 FPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT--NCPIPPNSNWTYKFQMKDQIGTFNYFPSTKV 133 (541)
Q Consensus 56 ~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~ 133 (541)
+--..+.|+.|+ +.+.++|....++..-. .+|+..+ ...|.||.+..+.+++ .+|+|-|+|-.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~----------~~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~- 106 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQKALEWEI----------LKGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL- 106 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCCcceEEe----------eccccccccccccCCCCceEEEEec--CCceEEeecCcC-
Confidence 334579999996 89999999765533111 0121111 2469999999988776 599999999432
Q ss_pred hhhcceeeEEEEecC
Q 009171 134 HRAFGGFGAVNVAQR 148 (541)
Q Consensus 134 q~~~Gl~G~liV~~~ 148 (541)
..+.|.|+|.+.
T Consensus 107 ---~~~~g~l~Vtg~ 118 (375)
T PRK10378 107 ---TNPKGKLIVKGE 118 (375)
T ss_pred ---CCCCceEEEeCC
Confidence 235889999874
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.54 E-value=0.29 Score=43.19 Aligned_cols=93 Identities=16% Similarity=0.098 Sum_probs=66.0
Q ss_pred EecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcceeE
Q 009171 416 IPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVWN 495 (541)
Q Consensus 416 ~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w~ 495 (541)
+.++.|++++.++.|.....|=|=+= ++....+. +..... ..-..---..++.|.||....|-+.+.++|.|-
T Consensus 65 ~~v~aG~tv~~v~~n~~el~hef~~~---~~~~~~~~--~~~~~~--~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye 137 (158)
T COG4454 65 FEVKAGETVRFVLKNEGELKHEFTMD---APDKNLEH--VTHMIL--ADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYE 137 (158)
T ss_pred ccccCCcEEeeeecCcccceEEEecc---Cccccchh--HHHhhh--CCccccCCcceeEeCCCCcEEEEEEecCCccEE
Confidence 56788999999999998777766554 22111110 100000 000001124789999999999999999999999
Q ss_pred EeechhhHhhcccEEEEEEe
Q 009171 496 LRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 496 ~HCHil~H~d~GMm~~~~V~ 515 (541)
+-|-|-.|-+.||-..+.|.
T Consensus 138 ~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 138 FACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred EEecCCCcccCCcEEEEEeC
Confidence 99999999999999999874
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.37 E-value=0.48 Score=40.63 Aligned_cols=74 Identities=15% Similarity=0.028 Sum_probs=49.3
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCch-hhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTK-VHRA 136 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (541)
.+.|.++.|++|++.+++. +--++....++ +++.-+.||+.....|++ +++|+|++.|..- +..-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~------------~~k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPEL------------GIKMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTC------------TEEEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-Ccccccccccc------------Ccccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4689999999999999996 22222222222 113457899999999996 7899999999864 2222
Q ss_pred cceeeEEEE
Q 009171 137 FGGFGAVNV 145 (541)
Q Consensus 137 ~Gl~G~liV 145 (541)
.-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 336666655
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.08 E-value=0.59 Score=39.66 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=46.7
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|++|.|+.+ .+...|-.. +.+.+.|+. ......+|+.. .++|+.||.|
T Consensus 43 ~ltV~~GdTVtw~~~-~d~~~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~--s~Tf~~~G~Y 96 (115)
T TIGR03102 43 AIRVDPGTTVVWEWT-GEGGGHNVV---------SDGDGDLDE--------------SERVSEEGTTY--EHTFEEPGIY 96 (115)
T ss_pred EEEECCCCEEEEEEC-CCCCCEEEE---------ECCCCCccc--------------cccccCCCCEE--EEEecCCcEE
Confidence 478899999998433 233455542 222222321 11123456644 4555789999
Q ss_pred EEeechhhHhhcccEEEEEEe
Q 009171 495 NLRSAIWERRYLGQELYLRVS 515 (541)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~ 515 (541)
.|+|=. |..+||-..+.|+
T Consensus 97 ~Y~C~p--H~~~gM~G~I~V~ 115 (115)
T TIGR03102 97 LYVCVP--HEALGMKGAVVVE 115 (115)
T ss_pred EEEccC--CCCCCCEEEEEEC
Confidence 999996 9999999999873
No 68
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.08 E-value=0.45 Score=40.56 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=55.1
Q ss_pred CceEEEec-CCEEEEEEEECCCCCeeEeeCCcCCCCC--------------CCCCCCC----CC---CCccCCCCeEEEE
Q 009171 58 GPAIEAVT-NDNIIVNLINKLDEPFLITWNGVKQRRT--------------TWQDGVL----GT---NCPIPPNSNWTYK 115 (541)
Q Consensus 58 GP~i~v~~-Gd~v~v~~~N~l~~~~~iH~HG~~~~~~--------------~~~DG~~----~~---q~~i~pG~~~~y~ 115 (541)
=..|.|+. |..|.|+|+|....+...--|.+-...+ ...|=+| .+ -.-|.|||+.+..
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 35799998 4899999999854332222221110000 0111122 11 3358999999999
Q ss_pred EEecC-Ccee-eEEcCCchhhhhcceeeEEE
Q 009171 116 FQMKD-QIGT-FNYFPSTKVHRAFGGFGAVN 144 (541)
Q Consensus 116 f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~li 144 (541)
|+++. ++|+ |-|-|-...|.. .|.|.|.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 99753 5786 999999988876 4988875
No 69
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.05 E-value=2.1 Score=36.70 Aligned_cols=72 Identities=14% Similarity=0.186 Sum_probs=51.4
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.++|++-+... .+.|.|.+..++ +.+-||+.-.+-++++ .+|.|.++|.-..
T Consensus 46 ~~l~lp~g~~v~~~ltS~DV--iHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G~y~~~C~e~C 106 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSEDV--IHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPGTYYGQCAEYC 106 (120)
T ss_dssp SEEEEETTSEEEEEEEESSS---EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSEEEEEEE-SSS
T ss_pred ceecccccceEeEEEEcCCc--cccccccccCcc----------------cccccccceeeeeeec-cCCcEEEcCcccc
Confidence 68999999999999998544 567777766443 4457888889999998 6999999999764
Q ss_pred cCCCcceEEEE
Q 009171 284 TKPILTTTAIL 294 (541)
Q Consensus 284 ~~~~~~~~ail 294 (541)
...-....+.+
T Consensus 107 G~gH~~M~~~v 117 (120)
T PF00116_consen 107 GAGHSFMPGKV 117 (120)
T ss_dssp STTGGG-EEEE
T ss_pred CcCcCCCeEEE
Confidence 44333333433
No 70
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=92.00 E-value=0.77 Score=39.63 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=48.8
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.++++.|++|+| .|.+...|-.+.=+-. +|..-+++...++.. ....|+.||.|
T Consensus 55 ~v~v~pGDTVtw--~~~d~~~Hnv~~~~~~----------------------~~~g~~~~~~~~~~s--~~~Tfe~~G~Y 108 (128)
T COG3794 55 EVTVKPGDTVTW--VNTDSVGHNVTAVGGM----------------------DPEGSGTLKAGINES--FTHTFETPGEY 108 (128)
T ss_pred EEEECCCCEEEE--EECCCCCceEEEeCCC----------------------CcccccccccCCCcc--eEEEecccceE
Confidence 467899999999 6666667765543222 111122333333344 44555569999
Q ss_pred EEeechhhHhhcccEEEEEEec
Q 009171 495 NLRSAIWERRYLGQELYLRVSN 516 (541)
Q Consensus 495 ~~HCHil~H~d~GMm~~~~V~~ 516 (541)
.|.|-. |.-+||-..+.|++
T Consensus 109 ~Y~C~P--H~~~gM~G~IvV~~ 128 (128)
T COG3794 109 TYYCTP--HPGMGMKGKIVVGE 128 (128)
T ss_pred EEEecc--CCCCCcEEEEEeCC
Confidence 999998 99999999998853
No 71
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=91.34 E-value=2.6 Score=39.70 Aligned_cols=77 Identities=12% Similarity=-0.001 Sum_probs=55.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCch-hhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTK-VHRA 136 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (541)
...|.+..|+.|++++++.. .+ ||..++ ... ++.-.-||..-...|++ +++|+|...|..- +..-
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip---~~~----~k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VI--HSFWVP---ELG----GKIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hh--hccccc---ccC----ceEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 35899999999999999862 22 665442 111 24456799999999985 7899999998753 2223
Q ss_pred cceeeEEEEecC
Q 009171 137 FGGFGAVNVAQR 148 (541)
Q Consensus 137 ~Gl~G~liV~~~ 148 (541)
..|.+-++|.++
T Consensus 182 ~~M~~~v~v~~~ 193 (201)
T TIGR02866 182 SLMLFKVVVVER 193 (201)
T ss_pred cCCeEEEEEECH
Confidence 558888988874
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=88.66 E-value=1.5 Score=41.32 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=57.3
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
+.+.++.|+.|++.+.+.+- .|.|.+ -+-+ --..+-||....+.|+++.||.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV-~Hsf~i-------p~~~--------------------~k~da~PG~~~~~~~~~~~~G~ 168 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV-IHSFWV-------PELG--------------------GKIDAIPGQYNALWFNADEPGV 168 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch-hhcccc-------cccC--------------------ceEEecCCcEEEEEEEeCCCEE
Confidence 45788999999999998653 454444 3222 1123457888999999999999
Q ss_pred eEEeechhh-HhhcccEEEEEEecCCc
Q 009171 494 WNLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
|...|.-.- ..|..|...++|+++++
T Consensus 169 y~~~c~e~cG~~h~~M~~~v~v~~~~~ 195 (201)
T TIGR02866 169 YYGYCAELCGAGHSLMLFKVVVVEREE 195 (201)
T ss_pred EEEEehhhCCcCccCCeEEEEEECHHH
Confidence 999999854 23578888998888754
No 73
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=88.58 E-value=3.2 Score=38.40 Aligned_cols=98 Identities=17% Similarity=0.001 Sum_probs=60.3
Q ss_pred ceeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCc-----cc--cccCcCCCCCccceEEeCCCCEEEE
Q 009171 412 GASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTA-----DI--RKRYNLNDAITRHTVQVYPQSWSAI 484 (541)
Q Consensus 412 ~~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~-----~~--~~~~~~~~p~~rDTv~vpp~g~~~i 484 (541)
+...+.++.|-.|.+++.|.+.+.|-+ -|+..+....+. +. ..... ..+.--..--+.+|.....
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~~l~Hnl-------~iv~~~~~~p~~~~i~~DgkIl~~~G-~s~~~~~~~GI~~G~s~~~ 155 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQESLPHNL-------VIVQNDTPTPNNPPISSDGKILLYVG-ASPGNYTSNGISSGQSASG 155 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCCCCCeeE-------EEEeCCCCCCCccccCCCCceeeecc-CCCCccccCCccCCceeeE
Confidence 344577889988999999998877754 455443211100 00 00000 0000001112345666665
Q ss_pred EEEcCCcceeEEeechhhHhhcccEEEEEEecC
Q 009171 485 YVSLDNKGVWNLRSAIWERRYLGQELYLRVSND 517 (541)
Q Consensus 485 rf~~dnpG~w~~HCHil~H~d~GMm~~~~V~~~ 517 (541)
.+..-.+|.|.+=|=+.-|...||-..+.|.+.
T Consensus 156 ~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 156 VYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred EEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 665656999999999999999999999988653
No 74
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=87.38 E-value=2.5 Score=40.98 Aligned_cols=78 Identities=9% Similarity=-0.106 Sum_probs=57.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCch-hhhh
Q 009171 58 GPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTK-VHRA 136 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~ 136 (541)
...|.+..|.+|+++++-. +--++....++. .+.-.-||...+..+++ +++|+|.-+|+.- +..-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~------------~k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLG------------GKIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCC------------ceeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 3899999999999999877 222233332221 13456789999999984 8899999999865 5555
Q ss_pred cceeeEEEEecCC
Q 009171 137 FGGFGAVNVAQRS 149 (541)
Q Consensus 137 ~Gl~G~liV~~~~ 149 (541)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 6799999999864
No 75
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=86.19 E-value=8.8 Score=30.39 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=37.9
Q ss_pred EEEEEEEcCCCCeEEEEEc-Cc--eeEEEeecCcccc--------eeeeeEEEEcCCceEEEEEEeCCC---CceeEEEE
Q 009171 214 YKFRVSNVGIATSINFRIQ-GH--TLTLVEVEGAHCL--------QESYESIDIHVGQSVAVVVAMHGP---PKDYYIVA 279 (541)
Q Consensus 214 ~rlRliNa~~~~~~~~~i~-~h--~~~via~DG~~~~--------p~~~d~v~l~pgeR~dv~v~~~~~---~g~~~i~~ 279 (541)
..|++.|.+... +.|.+. |+ +|.|...+|..+- -+......|.|||...+-...+.. ||.|.+.+
T Consensus 4 ~~l~v~N~s~~~-v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSDEP-VTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCCCe-EEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 577888888743 466664 44 4455555776652 234678999999999998888752 79998864
No 76
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=82.39 E-value=9.8 Score=34.68 Aligned_cols=97 Identities=15% Similarity=-0.016 Sum_probs=57.9
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccc-cCccc---cccCcC--CCCCccceEEeCCCCEEEEEE
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGT-WTADI---RKRYNL--NDAITRHTVQVYPQSWSAIYV 486 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~-~~~~~---~~~~~~--~~p~~rDTv~vpp~g~~~irf 486 (541)
...+-++.|-.|.+++.|....+|-+= |+..+... ..+.- .+-.+. ..+.--..=-+..|......+
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e~~pHnl~-------iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~ 156 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYESLPHNLK-------LLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWW 156 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCCCCCccEE-------EecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEe
Confidence 345778899999999999997776543 44333211 00000 000000 000000111123455555556
Q ss_pred EcCCcceeEEeechhhHhhcccEEEEEEec
Q 009171 487 SLDNKGVWNLRSAIWERRYLGQELYLRVSN 516 (541)
Q Consensus 487 ~~dnpG~w~~HCHil~H~d~GMm~~~~V~~ 516 (541)
..-.||.|.+=|-+.-|...||-..+.|-.
T Consensus 157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 157 NDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred ccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 666799999999999999999999887754
No 77
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=79.59 E-value=13 Score=31.92 Aligned_cols=77 Identities=16% Similarity=0.183 Sum_probs=51.5
Q ss_pred ccEEEec-CCEEEEEEEEcCCCC----eEEEEEc-CceeEEEee-------cCcccce----eeeeEEEEcCCceEEEEE
Q 009171 204 LSFTGQK-GKTYKFRVSNVGIAT----SINFRIQ-GHTLTLVEV-------EGAHCLQ----ESYESIDIHVGQSVAVVV 266 (541)
Q Consensus 204 p~l~v~~-G~~~rlRliNa~~~~----~~~~~i~-~h~~~via~-------DG~~~~p----~~~d~v~l~pgeR~dv~v 266 (541)
..|+|++ ++.+.+.|-|.|... .|++-|- .-++.-++. |-+|+.+ +-..+=.|++||..+|.|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 5789998 488999999998644 3344442 122322322 4445543 234567899999999999
Q ss_pred EeCC-CCc-eeEEEEe
Q 009171 267 AMHG-PPK-DYYIVAS 280 (541)
Q Consensus 267 ~~~~-~~g-~~~i~~~ 280 (541)
+++. .+| +|.+.|.
T Consensus 96 ~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCS 111 (125)
T ss_pred ECCCCCCCCcceEEEc
Confidence 9863 355 6999997
No 78
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=78.24 E-value=4.5 Score=32.04 Aligned_cols=57 Identities=18% Similarity=0.361 Sum_probs=30.9
Q ss_pred eEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC----CCccCCCCeEEEEEEecCC---ceeeEE
Q 009171 60 AIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT----NCPIPPNSNWTYKFQMKDQ---IGTFNY 127 (541)
Q Consensus 60 ~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~----q~~i~pG~~~~y~f~~~~~---~Gt~wY 127 (541)
+|+..-|++..+.|+|.-.+. -| -|++|-.-. +..|.||++.+|++..+.. +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g~~---vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEGKE---VW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT--E---EE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCCE---EE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 566666777777777552221 11 466776543 4569999999999998643 688863
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=78.17 E-value=7.9 Score=37.63 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=56.6
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.|++.+...+ ..|-|.+- +-+ --+.+-||-...+.+.++.||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D-ViHsF~IP-------~l~--------------------~k~d~iPG~~~~~~~~~~~~G 187 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD-VIHSFWIP-------QLG--------------------GKIDAIPGMTTELWLTANKPG 187 (247)
T ss_pred cceEEEeCCCeEEEEEEech-hceeEEec-------CCC--------------------ceeeecCCceEEEEEecCCCe
Confidence 34578899999999888664 55655554 332 223334677788999999999
Q ss_pred eeEEeechhh-HhhcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
.|-.+|+.+- .-|..|-..+.|+.+++
T Consensus 188 ~Y~g~Cae~CG~gH~~M~~~v~vvs~~~ 215 (247)
T COG1622 188 TYRGICAEYCGPGHSFMRFKVIVVSQED 215 (247)
T ss_pred EEEEEcHhhcCCCcccceEEEEEEcHHH
Confidence 9999999996 44555666777777665
No 80
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=76.13 E-value=21 Score=31.54 Aligned_cols=60 Identities=10% Similarity=0.193 Sum_probs=34.2
Q ss_pred eEEEecCCEEEEEEEECCCCC---eeEeeCCcC-----CC-CCCCCCCCCC------CCCccCCCCeEEEEEEec
Q 009171 60 AIEAVTNDNIIVNLINKLDEP---FLITWNGVK-----QR-RTTWQDGVLG------TNCPIPPNSNWTYKFQMK 119 (541)
Q Consensus 60 ~i~v~~Gd~v~v~~~N~l~~~---~~iH~HG~~-----~~-~~~~~DG~~~------~q~~i~pG~~~~y~f~~~ 119 (541)
.=.+++|.+..|.+.=..... ..--.||+. ++ +-+..||-.. +-||+.+||.++|.+.++
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 345678887777666444221 111223322 11 1133555421 369999999999999875
No 81
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=73.53 E-value=5.1 Score=41.55 Aligned_cols=77 Identities=21% Similarity=0.164 Sum_probs=49.3
Q ss_pred eEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCch-hhhhcc
Q 009171 60 AIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTK-VHRAFG 138 (541)
Q Consensus 60 ~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~G 138 (541)
+..|++||.|.+.++|-....-.+ ||.-.. .-|+ ...+.|-++-.|.|.+ +.+|.+||.|--. .-+-.-
T Consensus 559 ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p----~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~e 628 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDEVEDLT--HGFVIP----NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHME 628 (637)
T ss_pred EEEEecCcEEEEEecccceecccc--ceeeec----cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHHh
Confidence 678889999998888875433333 333221 1111 2357888889999985 7899999987543 222233
Q ss_pred eeeEEEEe
Q 009171 139 GFGAVNVA 146 (541)
Q Consensus 139 l~G~liV~ 146 (541)
|.|-++|+
T Consensus 629 m~~rmlve 636 (637)
T COG4263 629 MAGRMLVE 636 (637)
T ss_pred hccceeec
Confidence 66667775
No 82
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=72.41 E-value=28 Score=35.41 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=33.4
Q ss_pred CCcCceEEEecCCEEEEEEEECCCCC--------eeEeeCCc-CCC--CCCCCC-----CCCCC-CCccCCCCeEEEEEE
Q 009171 55 QFPGPAIEAVTNDNIIVNLINKLDEP--------FLITWNGV-KQR--RTTWQD-----GVLGT-NCPIPPNSNWTYKFQ 117 (541)
Q Consensus 55 ~~pGP~i~v~~Gd~v~v~~~N~l~~~--------~~iH~HG~-~~~--~~~~~D-----G~~~~-q~~i~pG~~~~y~f~ 117 (541)
.+||-++++ .+.++|+.+++ .+++|-.- .+. .+..-| |.-.. +.||.|||+.+.+.+
T Consensus 278 ~VPGR~l~~------~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~v~ 351 (399)
T TIGR03079 278 DVPGRALRV------TMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVKME 351 (399)
T ss_pred ecCCcEEEE------EEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEEEE
Confidence 467777654 46777776543 34555332 111 111112 33223 678999999999988
Q ss_pred e
Q 009171 118 M 118 (541)
Q Consensus 118 ~ 118 (541)
+
T Consensus 352 a 352 (399)
T TIGR03079 352 A 352 (399)
T ss_pred E
Confidence 6
No 83
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=66.12 E-value=26 Score=26.40 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=36.3
Q ss_pred cEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEe
Q 009171 205 SFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVAS 280 (541)
Q Consensus 205 ~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~ 280 (541)
.+++++|+++++.+-+.+. +..+.+...+|..+....-.. -..+..-.+.+... .+|+|.|+..
T Consensus 6 ~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 6 SFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 5788999998888866665 223566666654332211111 11122233344555 6899999875
No 84
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=64.74 E-value=13 Score=35.62 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=56.4
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|+.|++.+...+- .| +|+|-+-+. .+|.+ ||-...+.|+++.||.|
T Consensus 140 el~lP~g~pV~~~ltS~DV-iH-------SF~VP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G~y 191 (226)
T TIGR01433 140 EIAFPVNTPINFKITSNSV-MN-------SFFIPQLGS-----------------QIYAM---AGMQTKLHLIANEPGVY 191 (226)
T ss_pred eEEEECCCEEEEEEEECch-hh-------hhhhhhcCC-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 4678999999998887653 34 455554432 34555 67888899999999999
Q ss_pred EEeechhh-HhhcccEEEEEEecCCc
Q 009171 495 NLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 495 ~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
.-.|--.- -.|..|...++|+.+++
T Consensus 192 ~g~CaE~CG~~Ha~M~~~V~v~~~~~ 217 (226)
T TIGR01433 192 DGISANYSGPGFSGMKFKAIATDRAA 217 (226)
T ss_pred EEEchhhcCcCccCCeEEEEEECHHH
Confidence 99998774 33567888888877654
No 85
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=63.99 E-value=88 Score=26.34 Aligned_cols=21 Identities=10% Similarity=0.316 Sum_probs=13.2
Q ss_pred EEEEEEcCCC-CeEEEEEcCce
Q 009171 215 KFRVSNVGIA-TSINFRIQGHT 235 (541)
Q Consensus 215 rlRliNa~~~-~~~~~~i~~h~ 235 (541)
++|++|++.. ..+.+.++|..
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 6778887765 45566665443
No 86
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=61.37 E-value=47 Score=34.36 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=55.0
Q ss_pred eEEEcCC-CCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCC
Q 009171 194 ALLINGH-HNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPP 272 (541)
Q Consensus 194 ~~lvNG~-~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~ 272 (541)
.++|+.. .....++|++|+ ++|.+.|.+.... +|+++. |..+. -..=.|+||....+.+.+ .|
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~~~~~--------Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L--~p 96 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHSQKAL--------EWEILK--GVMVV---EERENIAPGFSQKMTANL--QP 96 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCCCCcc--------eEEeec--ccccc---ccccccCCCCceEEEEec--CC
Confidence 4566554 344789999996 9999999987542 344442 22110 012378999888888877 48
Q ss_pred ceeEEEEeccccCCCcceEEEEEecCC
Q 009171 273 KDYYIVASTRFTKPILTTTAILHYDGS 299 (541)
Q Consensus 273 g~~~i~~~~~~~~~~~~~~ail~y~~~ 299 (541)
|+|.+.|... ....+.+.+.|.
T Consensus 97 GtY~~~C~~~-----~~~~g~l~Vtg~ 118 (375)
T PRK10378 97 GEYDMTCGLL-----TNPKGKLIVKGE 118 (375)
T ss_pred ceEEeecCcC-----CCCCceEEEeCC
Confidence 9999999432 112556777664
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.23 E-value=24 Score=33.96 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=56.6
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.|++.+.+.+ -.|.|. |-+-+. . ..+-||....+.+.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D-ViHsf~-------ip~~~~-----------------k---~d~~Pg~~~~~~~~~~~~g 190 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD-VIHSWT-------VPSLGV-----------------K---VDAIPGRLNQLSFEPKRPG 190 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc-ccccee-------ccccCc-----------------e---eECCCCcceeEEEEeCCCE
Confidence 35678899999999999865 344444 433321 1 2234677888899999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.|...|.-+-.. |..|-..++|+.+++
T Consensus 191 ~y~~~C~e~CG~~H~~M~~~v~v~~~~~ 218 (228)
T MTH00140 191 VFYGQCSEICGANHSFMPIVVEAVPLED 218 (228)
T ss_pred EEEEECccccCcCcCCCeEEEEEECHHH
Confidence 999999988544 667777888877654
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=60.38 E-value=85 Score=24.95 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=39.7
Q ss_pred EEecCCEE--EEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEE-EEcCCceEEEEEEeCC-CCceeEEEEe
Q 009171 207 TGQKGKTY--KFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESI-DIHVGQSVAVVVAMHG-PPKDYYIVAS 280 (541)
Q Consensus 207 ~v~~G~~~--rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~-~~g~~~i~~~ 280 (541)
.+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.||+...+-+.... .+|.|.|++.
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~ 82 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVV 82 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence 45677765 778899987654444333 33455544 33445 7899999988888753 5788877765
No 89
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.58 E-value=4.1 Score=33.28 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=13.7
Q ss_pred CCcchhHHHHHHHHHHHhhh
Q 009171 1 MKGAIFLEILIGILACLCVF 20 (541)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (541)
|.++.|+.|.+++++.|+.+
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 77888877777666555544
No 90
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=59.29 E-value=26 Score=28.44 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=40.3
Q ss_pred EecCCEEEEEEE--EcCCCCeEEEEEcCc--eeEEEeecCcccceeeeeEE-EEcCCceEEEEEEeCCC--CceeEEEEe
Q 009171 208 GQKGKTYKFRVS--NVGIATSINFRIQGH--TLTLVEVEGAHCLQESYESI-DIHVGQSVAVVVAMHGP--PKDYYIVAS 280 (541)
Q Consensus 208 v~~G~~~rlRli--Na~~~~~~~~~i~~h--~~~via~DG~~~~p~~~d~v-~l~pgeR~dv~v~~~~~--~g~~~i~~~ 280 (541)
-+|||++.||.+ +..+ .. -...+. .++|..-+|..+.- ... .......++..+.+++. .|.|.|++.
T Consensus 11 YrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v~~---~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~ 84 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEVFR---WSVNTTNENGIFSGSFQLPDDAPLGTYTIRVK 84 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEEEE---EEEEETTCTTEEEEEEE--SS---EEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEEEE---EEeeeeCCCCEEEEEEECCCCCCCEeEEEEEE
Confidence 479999999999 7663 10 112223 35555555554322 222 34678888888888753 599999987
Q ss_pred c
Q 009171 281 T 281 (541)
Q Consensus 281 ~ 281 (541)
.
T Consensus 85 ~ 85 (99)
T PF01835_consen 85 T 85 (99)
T ss_dssp E
T ss_pred E
Confidence 5
No 91
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=57.24 E-value=77 Score=25.22 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=41.9
Q ss_pred cCceEEEe---cCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEc
Q 009171 57 PGPAIEAV---TNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYF 128 (541)
Q Consensus 57 pGP~i~v~---~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH 128 (541)
+.|.+.++ ....|.|+|.|....+..+........ .+.+ .+..|.||++.+..|.+. ..--||.
T Consensus 7 ~~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 7 YAPEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 45666665 235899999999888877777653211 1111 156799999999999873 3444553
No 92
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=56.66 E-value=28 Score=29.04 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=45.5
Q ss_pred EEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCchhhhhcceeeEEEEecC
Q 009171 70 IVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQR 148 (541)
Q Consensus 70 ~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 148 (541)
.|.++|.|.....|..|=- +. ..| .| ...+.||+++..+|.. +-.|+-.|.|+... ....-..-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~--S~--d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCK--SK--DDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEee--CC--Ccc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 4899999976666666654 21 112 22 2458999999999984 55677778898865 11113566666554
No 93
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=56.60 E-value=47 Score=29.91 Aligned_cols=77 Identities=10% Similarity=0.157 Sum_probs=52.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|..+++.+...+ ..|.|.+- +.+. ..|.+ ||-...+.+.++.||.|
T Consensus 74 ~LvLP~g~~Vr~~lTS~D-VIHSF~VP-------~lgv-----------------K~Dav---PGr~n~l~~~~~~~G~y 125 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD-VIHSWSVP-------SLGI-----------------KADAI---PGRLHKINTFILREGVF 125 (162)
T ss_pred CEEEeCCCEEEEEEEeCc-cceeeecc-------ccCc-----------------eeecc---CCceEEEEEecCCCeEE
Confidence 467889999999887665 34666553 2221 22333 67777888999999999
Q ss_pred EEeechhh-HhhcccEEEEEEecCCc
Q 009171 495 NLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 495 ~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
...|.-+- --|..|-..++|+.+++
T Consensus 126 ~gqCsElCG~gHs~M~~~V~vvs~~~ 151 (162)
T PTZ00047 126 YGQCSEMCGTLHGFMPIVVEAVSPEA 151 (162)
T ss_pred EEEcchhcCcCccCceEEEEEeCHHH
Confidence 99999874 23445667777776554
No 94
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=55.57 E-value=31 Score=33.21 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=57.5
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+-. |.|+|-+-+. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DVi--------Hsf~ip~~~~-----------------k~da~---PG~~~~~~~~~~~~G 190 (230)
T MTH00129 139 DHRMVVPVESPIRVLVSAEDVL--------HSWAVPALGV-----------------KMDAV---PGRLNQTAFIASRPG 190 (230)
T ss_pred cceEEEecCcEEEEEEEeCccc--------cceeccccCC-----------------ccccC---CCceEEEEEEeCCce
Confidence 3457789999999988877632 5666666542 23433 678888899999999
Q ss_pred eeEEeechhhH-hhcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWER-RYLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (541)
.|...|.-+-- .|..|-..++|+.+++
T Consensus 191 ~~~g~C~e~CG~~H~~M~~~v~vv~~~~ 218 (230)
T MTH00129 191 VFYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEChhhccccccCCcEEEEEECHHH
Confidence 99999988643 3667777888877654
No 95
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=55.37 E-value=69 Score=24.69 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=31.3
Q ss_pred EecCCEE--EEEEEEcCCCC--eEEEEEcCceeEEEeecCccc--ceeeeeEEEEcCCceEEEEEEeC--C--CCceeEE
Q 009171 208 GQKGKTY--KFRVSNVGIAT--SINFRIQGHTLTLVEVEGAHC--LQESYESIDIHVGQSVAVVVAMH--G--PPKDYYI 277 (541)
Q Consensus 208 v~~G~~~--rlRliNa~~~~--~~~~~i~~h~~~via~DG~~~--~p~~~d~v~l~pgeR~dv~v~~~--~--~~g~~~i 277 (541)
|.+|+.. ++.+-|.+... ...+++.. -+|=.+ .|..+. .|.||+...+-++.. . .+|.|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3566654 78888988543 23443332 223221 233333 889998776666653 2 4799988
Q ss_pred EEec
Q 009171 278 VAST 281 (541)
Q Consensus 278 ~~~~ 281 (541)
....
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7753
No 96
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=54.89 E-value=33 Score=32.93 Aligned_cols=78 Identities=8% Similarity=0.080 Sum_probs=55.5
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
+.+.++.|+.+++.+...+- . |.|+|-+-|. ..|.+ ||....+.+.++.||.
T Consensus 140 n~lvlP~~~~v~~~~tS~DV-i-------Hsf~ip~lg~-----------------k~dai---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV-L-------HSWAVPSLGL-----------------KTDAI---PGRLNQTTLMSTRPGL 191 (227)
T ss_pred ceEEecCCCEEEEEEEECcc-c-------cccccccccc-----------------ceecC---CCceEEEEEecCCcEE
Confidence 46788999999998887663 3 4555554431 23433 6777888999999999
Q ss_pred eEEeechhhHh-hcccEEEEEEecCCc
Q 009171 494 WNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 494 w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
+..-|.-+-.. |.-|-..++|..+++
T Consensus 192 ~~g~Cse~CG~~H~~M~~~v~v~~~~~ 218 (227)
T MTH00098 192 YYGQCSEICGSNHSFMPIVLELVPLKY 218 (227)
T ss_pred EEEECccccCcCcCCceEEEEEeCHHH
Confidence 99999887544 556777777777654
No 97
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=54.28 E-value=15 Score=30.98 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=38.4
Q ss_pred EEEEECCCCC---eeEeeCCcCCCC---CCCCCCCCCCCCccCCCCeEEEEEEe--cCCceeeEEcCCchhhhhcceeeE
Q 009171 71 VNLINKLDEP---FLITWNGVKQRR---TTWQDGVLGTNCPIPPNSNWTYKFQM--KDQIGTFNYFPSTKVHRAFGGFGA 142 (541)
Q Consensus 71 v~~~N~l~~~---~~iH~HG~~~~~---~~~~DG~~~~q~~i~pG~~~~y~f~~--~~~~Gt~wYH~H~~~q~~~Gl~G~ 142 (541)
|++.|....+ .+=|||=-...+ .-.-.||-|-|.-|.||++|+|.=-. ..+.|+ |.|-
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~--------------M~Gh 99 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT--------------MQGH 99 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce--------------EEEE
Confidence 6667776544 366887321110 11234443448889999999996433 345676 7777
Q ss_pred EEEecCC
Q 009171 143 VNVAQRS 149 (541)
Q Consensus 143 liV~~~~ 149 (541)
+...+.+
T Consensus 100 Y~M~~e~ 106 (126)
T COG2967 100 YEMIDED 106 (126)
T ss_pred EEEecCC
Confidence 6666543
No 98
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=51.49 E-value=1.7e+02 Score=25.73 Aligned_cols=82 Identities=24% Similarity=0.325 Sum_probs=54.6
Q ss_pred CeEEEcCCCCCccEEEe-cCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceee-------eeEEEEcCCceE-E
Q 009171 193 DALLINGHHNSLSFTGQ-KGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQES-------YESIDIHVGQSV-A 263 (541)
Q Consensus 193 ~~~lvNG~~~~p~l~v~-~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~-------~d~v~l~pgeR~-d 263 (541)
+.-.||.-+. +...-. .-.+|-|.+-|.|... +.++...++|+ +||+.+.|.. .+.|.|.|||-. +
T Consensus 51 dFaIIndPg~-i~~~~~~g~~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~e 125 (154)
T COG3354 51 DFAIINDPGQ-IPYVGTDGPYTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGRE 125 (154)
T ss_pred cEEEecCCCC-CccccCCCceEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeE
Confidence 4567776665 332222 1247899999999864 47788888887 7998886633 257889999988 6
Q ss_pred EEEEeCCCCceeEEEEe
Q 009171 264 VVVAMHGPPKDYYIVAS 280 (541)
Q Consensus 264 v~v~~~~~~g~~~i~~~ 280 (541)
+.+... ..|.-.+...
T Consensus 126 v~vn~~-lSGyhri~V~ 141 (154)
T COG3354 126 VTVNEA-LSGYHRIVVS 141 (154)
T ss_pred EEeccC-CCcceEEEEE
Confidence 666554 3354445444
No 99
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=50.30 E-value=30 Score=32.96 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=56.2
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|+.|++.+...+- .| +|+|-+-+. .+|.+ ||-...+.|.++.||.|
T Consensus 131 ~l~iP~g~~v~~~ltS~DV-iH-------sf~vP~l~~-----------------k~dai---PG~~~~~~~~~~~~G~y 182 (217)
T TIGR01432 131 YLNIPKDRPVLFKLQSADT-MT-------SFWIPQLGG-----------------QKYAM---TGMTMNWYLQADQVGTY 182 (217)
T ss_pred cEEEECCCEEEEEEECCch-hh-------hhhchhhCc-----------------eeecC---CCceEEEEEEeCCCEEE
Confidence 3678899999999887652 33 455544432 34555 68888999999999999
Q ss_pred EEeechhh-HhhcccEEEEEEecCCc
Q 009171 495 NLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 495 ~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
--.|--+- -.|.-|...++|+++++
T Consensus 183 ~g~Cae~CG~~Hs~M~~~v~v~~~~~ 208 (217)
T TIGR01432 183 RGRNANFNGEGFADQTFDVNAVSEKD 208 (217)
T ss_pred EEEehhhcCccccCCeEEEEEeCHHH
Confidence 99997764 23567888888888765
No 100
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=50.20 E-value=1.1e+02 Score=28.49 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++-.... .+.|.+.+... .+..-||..-.+.+.++ .+|.|...|+...
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~C 176 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV--IHSFSVPDLNL----------------KMDAIPGRINHLFFCPD-RHGVFVGYCSELC 176 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc--ccceeccccCc----------------eeecCCCceEEEEEEcC-CCEEEEEEeehhh
Confidence 35889999999998866443 44555554322 23344888888888887 6999999998764
Q ss_pred cC
Q 009171 284 TK 285 (541)
Q Consensus 284 ~~ 285 (541)
+.
T Consensus 177 G~ 178 (194)
T MTH00047 177 GV 178 (194)
T ss_pred Cc
Confidence 43
No 101
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=48.84 E-value=1.3e+02 Score=23.79 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=35.8
Q ss_pred CEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEe
Q 009171 212 KTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVAS 280 (541)
Q Consensus 212 ~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~ 280 (541)
..++|.|.|.|.... .|.+... .+ ......++.|.+|++.++.+.+....|-|-+..+
T Consensus 20 g~l~l~l~N~g~~~~-~~~v~~~---------~y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAV-TFTVYDN---------AY-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCCcE-EEEEEeC---------Cc-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEE
Confidence 368999999876543 4443321 11 1123467788888888888877545566666555
No 102
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=48.27 E-value=1.1e+02 Score=28.65 Aligned_cols=76 Identities=8% Similarity=0.131 Sum_probs=54.5
Q ss_pred EEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCccee
Q 009171 415 VIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGVW 494 (541)
Q Consensus 415 ~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~w 494 (541)
.+.++.|+.+++.+...+ -.|.|.+-. -+ ..+|.+ ||....+.+.++.||.|
T Consensus 117 ~l~lp~g~~v~~~ltS~D-ViHsf~vp~-------l~-----------------~k~d~~---PG~~~~~~~~~~~~G~y 168 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD-VIHSFSVPD-------LN-----------------LKMDAI---PGRINHLFFCPDRHGVF 168 (194)
T ss_pred eEEEeCCCEEEeeeecCc-cccceeccc-------cC-----------------ceeecC---CCceEEEEEEcCCCEEE
Confidence 467888999998887654 556655542 21 122333 68888999999999999
Q ss_pred EEeechhhH-hhcccEEEEEEecCC
Q 009171 495 NLRSAIWER-RYLGQELYLRVSNDE 518 (541)
Q Consensus 495 ~~HCHil~H-~d~GMm~~~~V~~~~ 518 (541)
-.-|.-+-= .|..|-..++|++++
T Consensus 169 ~g~C~e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 169 VGYCSELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEeehhhCcCcccCcEEEEEEcCC
Confidence 999998853 366777788887764
No 103
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=47.55 E-value=52 Score=31.65 Aligned_cols=79 Identities=9% Similarity=0.104 Sum_probs=55.2
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+- . |.|+|-+-|. ..|.+ ||....+.+.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DV-i-------Hsf~iP~lg~-----------------k~dai---PG~~~~~~~~~~~~G 190 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAEDV-L-------HSWTVPALGV-----------------KMDAV---PGRLNQATFIISRPG 190 (230)
T ss_pred CCeEEEecCCEEEEEEEcCcc-c-------ccccccccCc-----------------eeEec---CCceEEEEEEeCCcE
Confidence 345778999999998887663 3 4555554431 22333 677778889999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.|.--|.-+-.. |.-|-..++|..+++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (230)
T MTH00185 191 LYYGQCSEICGANHSFMPIVVEAVPLEH 218 (230)
T ss_pred EEEEEchhhcCcCcCCCeEEEEEECHHH
Confidence 999999887544 556666777776554
No 104
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=46.80 E-value=50 Score=31.70 Aligned_cols=79 Identities=10% Similarity=0.124 Sum_probs=55.4
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+.+.+ -.| .|+|-+-|. ..|. -||....+.+.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViH-------sf~vP~~~~-----------------k~da---iPG~~~~~~~~~~~~G 190 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD-VIH-------SWTVPSLGV-----------------KVDA---VPGRLNQIGFTITRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEeCC-ccc-------cccccccCc-----------------ceec---CCCceEEEEEEeCCCE
Confidence 34577899999999999865 344 444444331 1233 3677788889999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.+..-|.-+-.. |.-|-..++|+.+++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00008 191 VFYGQCSEICGANHSFMPIVLEAVDTKS 218 (228)
T ss_pred EEEEEChhhcCcCccCceeEEEEECHHH
Confidence 999999887544 566777777777654
No 105
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=44.40 E-value=59 Score=31.21 Aligned_cols=79 Identities=10% Similarity=0.082 Sum_probs=55.9
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+- . |.|+|-+-+. ..|.+ ||....+.|.++.||
T Consensus 139 ~n~lvlP~~~~v~~~~tS~DV-i-------Hsf~vP~lg~-----------------K~Dav---PG~~n~~~~~~~~~G 190 (227)
T MTH00117 139 DHRMVIPMESPIRILITAEDV-L-------HSWAVPSLGV-----------------KTDAV---PGRLNQTSFITTRPG 190 (227)
T ss_pred cceEEEecCceEEEEEEecch-h-------hcccccccCc-----------------eeEec---CCceEEEEEEEcccc
Confidence 356788999999998887763 2 4565555431 23443 677788899999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.|.--|--+--. |.-|-..++|+++++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (227)
T MTH00117 191 VFYGQCSEICGANHSFMPIVVESVPLKH 218 (227)
T ss_pred eEEEEeccccccCccCCeEEEEEcCHHH
Confidence 999999887544 556666777776554
No 106
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=41.00 E-value=1.1e+02 Score=26.20 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=35.3
Q ss_pred CceEEEecCCEEEEEEEECCC---CCeeEeeC----CcCCC-CCCCCCCCCCCCCccCCCCeEEEEEEec
Q 009171 58 GPAIEAVTNDNIIVNLINKLD---EPFLITWN----GVKQR-RTTWQDGVLGTNCPIPPNSNWTYKFQMK 119 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~N~l~---~~~~iH~H----G~~~~-~~~~~DG~~~~q~~i~pG~~~~y~f~~~ 119 (541)
+..=.+++|..+.+.+.=..+ .......| |+..+ +-+..||=-.+.|||..|+.++|.+.++
T Consensus 19 ~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 19 GDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 344567788888777662222 22233333 43222 1123454211379999999999998764
No 107
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=40.81 E-value=55 Score=33.41 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=34.2
Q ss_pred eeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCCe--------eEeeCCcCCCCC--CC-CCCCCC----C--CCccC
Q 009171 45 VPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEPF--------LITWNGVKQRRT--TW-QDGVLG----T--NCPIP 107 (541)
Q Consensus 45 ~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~~--------~iH~HG~~~~~~--~~-~DG~~~----~--q~~i~ 107 (541)
++.++-.-+=++||-++++ .++++|+.+++. +++|-.-.+... .+ .|-++. + ..||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~------~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTM------TLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEE------EEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEE------EEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 3444443344678888765 478888876543 455543332211 00 011111 2 56999
Q ss_pred CCCeEEEEEEec
Q 009171 108 PNSNWTYKFQMK 119 (541)
Q Consensus 108 pG~~~~y~f~~~ 119 (541)
|||+.+.+.++.
T Consensus 323 PGETrtl~V~a~ 334 (381)
T PF04744_consen 323 PGETRTLTVEAQ 334 (381)
T ss_dssp TT-EEEEEEEEE
T ss_pred CCceEEEEEEee
Confidence 999999999973
No 108
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=40.79 E-value=50 Score=30.38 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=23.9
Q ss_pred CcchhHHHHHHHHHHHhhhhcccC--CCeEEEEEEEEEEEe
Q 009171 2 KGAIFLEILIGILACLCVFWVNAE--DPYRSYTWTVTYGTI 40 (541)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 40 (541)
++++|+.++|+.+|++++.++.|. +......+++...++
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~a~A~~~d~~~pI~I~AD~~~~ 41 (180)
T PRK10894 1 TNKLSLNLLLASSLLAASIPAFALTGDTDQPIHIDSDQQSL 41 (180)
T ss_pred CcchHHHHHHHHHHHHHHHHHhhcccccCCCEEEEeCceEe
Confidence 467888888777766655555553 344556666665554
No 109
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=40.67 E-value=1.7e+02 Score=25.04 Aligned_cols=61 Identities=13% Similarity=0.290 Sum_probs=41.5
Q ss_pred cEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCccc-------ceeeeeEEEEcCCceEEEEEEeCC
Q 009171 205 SFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHC-------LQESYESIDIHVGQSVAVVVAMHG 270 (541)
Q Consensus 205 ~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~-------~p~~~d~v~l~pgeR~dv~v~~~~ 270 (541)
.++++.-..|+|++-..+ ..+|.|+|..+ ++.++..- .+....++.|..|++++|-|...+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 355666567999998433 45778988864 66565443 345677889999999999998753
No 110
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.44 E-value=70 Score=30.70 Aligned_cols=79 Identities=8% Similarity=0.095 Sum_probs=55.2
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+- . |.|+|-+-|. ..|.+ ||....+.+.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~DV-i-------Hsf~vP~lg~-----------------k~da~---PG~~n~~~~~~~~~G 190 (228)
T MTH00076 139 DNRMVVPMESPIRMLITAEDV-L-------HSWAVPSLGI-----------------KTDAI---PGRLNQTSFIASRPG 190 (228)
T ss_pred CceEEEecCCEEEEEEEeccc-c-------ccccccccCc-----------------eEEcc---CCcceeEEEEeCCcE
Confidence 346788999999998887653 3 4555544431 22333 577778889999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.+---|.-+-.. |..|-..++|+++++
T Consensus 191 ~~~g~C~e~CG~~Hs~M~~~v~vv~~~~ 218 (228)
T MTH00076 191 VYYGQCSEICGANHSFMPIVVEATPLNN 218 (228)
T ss_pred EEEEEChhhcCccccCCceEEEEeCHHH
Confidence 999999887543 566777777776654
No 111
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.18 E-value=87 Score=30.20 Aligned_cols=79 Identities=10% Similarity=0.099 Sum_probs=54.7
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+.+.+ -.| .|+|-+-|. ..|.+ ||....+.|.++.||
T Consensus 143 dn~lvlP~~~~v~~~itS~D-ViH-------sf~vp~lg~-----------------k~dai---PG~~~~~~~~~~~~G 194 (234)
T MTH00051 143 DNRLIVPIQTQVRVLVTAAD-VLH-------SFAVPSLSV-----------------KIDAV---PGRLNQTSFFIKRPG 194 (234)
T ss_pred ceEEEEecCcEEEEEEEeCc-hhc-------cccccccCc-----------------eeEcc---CCceEeEEEEeCCCE
Confidence 35678999999999998875 344 444444331 22333 677778889999999
Q ss_pred eeEEeechhhH-hhcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWER-RYLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (541)
.+---|.-+-- .|.-|-..++|+.+++
T Consensus 195 ~y~g~Cse~CG~~Hs~M~i~v~vv~~~~ 222 (234)
T MTH00051 195 VFYGQCSEICGANHSFMPIVIEGVSLDK 222 (234)
T ss_pred EEEEEChhhcCcccccCeeEEEEECHHH
Confidence 99999988743 3556667777777654
No 112
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.60 E-value=52 Score=29.25 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred cCCCeEEEEEEEEEEEeCC--CCeeeeEEEECCCC-cCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCC
Q 009171 24 AEDPYRSYTWTVTYGTISP--FGVPQQGILINGQF-PGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVL 100 (541)
Q Consensus 24 ~~~~~~~~~l~~~~~~~~~--~g~~~~~~~~Ng~~-pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~ 100 (541)
+-.....|-++.++..... .|+..++ .|.+ +|..-+. .|..++++++-. .....++..|+ .+....+|..
T Consensus 29 a~~~~~~yf~tpse~~~~~~~~g~~vrv---gG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~--lPd~F~eg~~ 101 (148)
T PRK13254 29 ALRQNIVFFYTPSEVAEGEAPAGRRFRL---GGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGI--LPDLFREGQG 101 (148)
T ss_pred HHHhCCceeeCHHHHhcCCccCCCeEEE---eEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCC--CCccccCCCE
Confidence 3334455666665543332 2444443 3433 4544443 788889988876 56678999998 5556777765
Q ss_pred CC
Q 009171 101 GT 102 (541)
Q Consensus 101 ~~ 102 (541)
.+
T Consensus 102 VV 103 (148)
T PRK13254 102 VV 103 (148)
T ss_pred EE
Confidence 44
No 113
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=36.02 E-value=2.2e+02 Score=24.24 Aligned_cols=60 Identities=12% Similarity=0.245 Sum_probs=36.5
Q ss_pred EEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCccc-ceeeeeEEEEcCCceEEEEEEeCC
Q 009171 206 FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHC-LQESYESIDIHVGQSVAVVVAMHG 270 (541)
Q Consensus 206 l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~-~p~~~d~v~l~pgeR~dv~v~~~~ 270 (541)
++++....|+|++...+. ..+.|+|.. |++.++..- .+.....+.|..|++|.+.|....
T Consensus 52 i~~~~~G~y~f~~~~~~~---~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDDG---ARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCCc---EEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 444444569998854333 477888763 444433221 123445688888888888887653
No 114
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.35 E-value=1.8e+02 Score=27.94 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=44.9
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++-+... .|.|.+.+... .+..-||..-.+.+.++ .+|.|...|....
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~----------------k~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--IHSWTVPSLGV----------------KVDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--ccceeccccCc----------------eeECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 57889999999999988554 34455544322 23445888888888888 6999999998654
Q ss_pred c
Q 009171 284 T 284 (541)
Q Consensus 284 ~ 284 (541)
+
T Consensus 201 G 201 (228)
T MTH00140 201 G 201 (228)
T ss_pred C
Confidence 3
No 115
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=35.04 E-value=2e+02 Score=27.33 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCeeeeEEEECCCCcCceEEEecCCEEEEEEEECCCCC-----eeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEE
Q 009171 42 PFGVPQQGILINGQFPGPAIEAVTNDNIIVNLINKLDEP-----FLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKF 116 (541)
Q Consensus 42 ~~g~~~~~~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~~-----~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f 116 (541)
++|..---+++.|.+---.|.|+.|..+++++.=+.+-+ ..--||+. ...+-++....+|
T Consensus 80 ~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe~ 144 (272)
T COG4633 80 PNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIEF 144 (272)
T ss_pred cCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEEe
Confidence 344444445555555445899999999999999886432 23334443 3356688889999
Q ss_pred EecCCceeeEEcCCchhhhhcceeeEEEEecCCC
Q 009171 117 QMKDQIGTFNYFPSTKVHRAFGGFGAVNVAQRSV 150 (541)
Q Consensus 117 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 150 (541)
+ +.++|.|-+-|-.. + |.|.++|+....
T Consensus 145 T-~~s~ge~af~cgmn----m-~~G~~~vet~~~ 172 (272)
T COG4633 145 T-PISKGEYAFLCGMN----M-FRGNIQVETLTG 172 (272)
T ss_pred c-cccccchhhhcchh----h-ccCeeEEEecCC
Confidence 8 68899999888643 2 779999998543
No 116
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=34.49 E-value=1.7e+02 Score=28.06 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=42.6
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++-...-. |.|.+. .-.-....-||..-.+-++++ .+|.|...|..+.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--HSF~VP----------------~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--NSFFIP----------------QLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--hhhhhh----------------hcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 467888999888888765543 233333 222233344888888889888 6999999998754
Q ss_pred c
Q 009171 284 T 284 (541)
Q Consensus 284 ~ 284 (541)
+
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 117
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=33.80 E-value=1.4e+02 Score=22.21 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEE
Q 009171 206 FTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVA 263 (541)
Q Consensus 206 l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~d 263 (541)
+++.+|+..+||.... ..+.+.+-.+++.. +| ..+-+.|.+|+++.
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EG------DPDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CC------CCCCEEECCCCEEE
Confidence 5677888888885432 23666666766654 44 23445556666554
No 118
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=33.48 E-value=1.2e+02 Score=25.38 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=27.0
Q ss_pred EEEEEEEEcCCCC-eEEEEEcCce-eEEEeecCcccceeeeeEEEEcCCceEEEEEEeC
Q 009171 213 TYKFRVSNVGIAT-SINFRIQGHT-LTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMH 269 (541)
Q Consensus 213 ~~rlRliNa~~~~-~~~~~i~~h~-~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~ 269 (541)
.|+++|+|-+... .+.+.++|.+ +++. .....+.|.||+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 4899999999654 5666666632 2221 134688899999887766543
No 119
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=33.08 E-value=1.8e+02 Score=27.69 Aligned_cols=62 Identities=10% Similarity=0.005 Sum_probs=42.6
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++-...- .+.|.+. .-.-....-||..-.+-++++ .+|.|...|..+.
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~vP----------------~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWIP----------------QLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhch----------------hhCceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 46788888888888876554 3333333 222233344899999999988 6999999998653
Q ss_pred c
Q 009171 284 T 284 (541)
Q Consensus 284 ~ 284 (541)
+
T Consensus 191 G 191 (217)
T TIGR01432 191 G 191 (217)
T ss_pred C
Confidence 3
No 120
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.52 E-value=1.1e+02 Score=27.51 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=46.9
Q ss_pred cccCCCeEEEEEEEEEEEeCCCCeeeeEEEECCC-CcCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCC
Q 009171 22 VNAEDPYRSYTWTVTYGTISPFGVPQQGILINGQ-FPGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVL 100 (541)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~Ng~-~pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~ 100 (541)
..|-.....|-++.++...... ...+.+...|. .+|-..|-..+-.|+++++ +......++..|+ .+.-+.+|..
T Consensus 27 ~~al~~n~~yF~tpsEv~~~~~-~~~~~~RlGG~V~~GSv~r~~~~~~v~F~vt-D~~~~v~V~Y~Gi--lPDlFrEGqg 102 (155)
T PRK13159 27 VLALQRNMSYLFTPSQVRAGAA-AGYQQFRLGGMVKAGSIQRAADSLKVSFTVI-DKNAATQVEYTGI--LPDLFRDNQS 102 (155)
T ss_pred HHHhhhCceEEECHHHHhcCCc-ccCCeEEEccEEecCcEEEcCCCcEEEEEEE-cCCcEEEEEEccC--CCccccCCCe
Confidence 3344455677777777544322 12255566666 4777766333336788777 4466778999998 5556777764
Q ss_pred CC
Q 009171 101 GT 102 (541)
Q Consensus 101 ~~ 102 (541)
.+
T Consensus 103 VV 104 (155)
T PRK13159 103 VI 104 (155)
T ss_pred EE
Confidence 43
No 121
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=32.23 E-value=71 Score=27.63 Aligned_cols=19 Identities=26% Similarity=0.709 Sum_probs=12.9
Q ss_pred CCCCCCCCccCCCCeEEEE
Q 009171 97 DGVLGTNCPIPPNSNWTYK 115 (541)
Q Consensus 97 DG~~~~q~~i~pG~~~~y~ 115 (541)
+||-|-|.-|.||++|.|.
T Consensus 67 ~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 67 EGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred CceecCCceECCCCCeEEe
Confidence 4443336679999988775
No 122
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.58 E-value=1.4e+02 Score=28.64 Aligned_cols=78 Identities=9% Similarity=0.113 Sum_probs=0.0
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
+.+.++.|+.+++.+...+- -|.|+|-+-+. .+|.+ ||-...+.|.++.||.
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--------iHsf~vp~l~~-----------------k~dav---PG~~~~~~~~~~~~G~ 191 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--------IHSWTVPSLGV-----------------KVDAV---PGRLNQLNFLINRPGL 191 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--------hhheeccccCC-----------------eeecC---CCceEEEEEEEcCceE
Q ss_pred eEEeechh-hHhhcccEEEEEEecCCc
Q 009171 494 WNLRSAIW-ERRYLGQELYLRVSNDER 519 (541)
Q Consensus 494 w~~HCHil-~H~d~GMm~~~~V~~~~~ 519 (541)
|.--|--+ -.-|.-|-..++|+.+++
T Consensus 192 y~g~Cse~CG~~H~~M~~~v~vv~~~~ 218 (227)
T MTH00154 192 FFGQCSEICGANHSFMPIVIESVSVNN 218 (227)
T ss_pred EEEEeechhCcCccCCeEEEEEeCHHH
No 123
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.45 E-value=1.3e+02 Score=28.97 Aligned_cols=79 Identities=8% Similarity=0.132 Sum_probs=54.3
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+ -.|.|.+ -+-| ...|.+ ||....+.+.++.||
T Consensus 139 dn~lvlP~~~~v~~~~tS~D-ViHsf~i-------P~lg-----------------~k~dai---PG~~~~~~~~~~~~G 190 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD-VLHSWAV-------PSLG-----------------VKMDAV---PGRLNQTTFFISRTG 190 (229)
T ss_pred CceEEEecCeEEEEEEEECC-ccccccc-------cccC-----------------ceeecC---CCceEEEEEEcCCCE
Confidence 34578899999999887665 4555444 3332 123443 677788899999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.+.--|.-+--. |.-|-..++|+++++
T Consensus 191 ~~~g~Cse~CG~~Hs~M~~~v~vv~~~~ 218 (229)
T MTH00038 191 LFYGQCSEICGANHSFMPIVIESVPFNT 218 (229)
T ss_pred EEEEEcccccCcCcCCCeEEEEEeCHHH
Confidence 999999887544 445666677766554
No 124
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=30.02 E-value=1.7e+02 Score=24.91 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=44.2
Q ss_pred EEEcCCCCCccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCccccee----eeeEEEEcCCceEEEEEEeCC
Q 009171 195 LLINGHHNSLSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQE----SYESIDIHVGQSVAVVVAMHG 270 (541)
Q Consensus 195 ~lvNG~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~----~~d~v~l~pgeR~dv~v~~~~ 270 (541)
.++|-.+. +.-.+..|+.+++|+-=......-.+. -.+.+...+|..+--. ....+....++++.+.+.++.
T Consensus 19 ~i~~~~g~-~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~ 94 (142)
T PF14524_consen 19 RILDSDGE-PTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPK 94 (142)
T ss_dssp EEEETTEE-S-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE-
T ss_pred EEEeCCCC-EeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcC
Confidence 34443333 444577888888877555443332222 2355566667655321 123455555999999998875
Q ss_pred --CCceeEEEEec
Q 009171 271 --PPKDYYIVAST 281 (541)
Q Consensus 271 --~~g~~~i~~~~ 281 (541)
.+|.|.+.+.-
T Consensus 95 ~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 95 PLNPGEYSISVGL 107 (142)
T ss_dssp -B-SEEEEEEEEE
T ss_pred ccCCCeEEEEEEE
Confidence 58999998774
No 125
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=29.98 E-value=1.9e+02 Score=27.98 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=55.9
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+ -.|.|.+- +-+. .+|.+ ||....+.+.++.||
T Consensus 150 ~n~lvlP~~~~v~~~~tS~D-ViHsf~iP-------~lgv-----------------K~Dai---PG~~n~~~~~~~~~G 201 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGAD-VLHSFAVP-------SLGL-----------------KIDAV---PGRLNQTGFFIKRPG 201 (240)
T ss_pred CceEEEecCCEEEEEEEcCC-cccceeec-------ccCc-----------------eeecC---CCcceeEEEEcCCCE
Confidence 34578899999999888664 45655543 3321 23443 566678889999999
Q ss_pred eeEEeechhhHh-hcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWERR-YLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H~-d~GMm~~~~V~~~~~ 519 (541)
.|.-.|.-+--. |.-|-..++|+++++
T Consensus 202 ~y~g~C~e~CG~~Hs~M~~~v~vv~~~~ 229 (240)
T MTH00023 202 VFYGQCSEICGANHSFMPIVIEAVSLDK 229 (240)
T ss_pred EEEEEchhhcCcCccCCeEEEEEECHHH
Confidence 999999988544 566777888877654
No 126
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.82 E-value=59 Score=28.76 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=20.8
Q ss_pred eCCCCEEEEEEE-cCCc---ceeEEeechh
Q 009171 476 VYPQSWSAIYVS-LDNK---GVWNLRSAIW 501 (541)
Q Consensus 476 vpp~g~~~irf~-~dnp---G~w~~HCHil 501 (541)
|+||..+.|.++ ..|| |.|.|+|=..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 578999999994 4575 9999998764
No 127
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.50 E-value=1.5e+02 Score=28.36 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+ -.|. |+|-+-+. .+|.+ ||-...+.|.++.||
T Consensus 139 ~n~l~lP~~~~v~~~~tS~D-ViHs-------f~vP~l~~-----------------K~Dai---PG~~n~~~~~~~~~G 190 (226)
T MTH00139 139 DNRLVLPYKSNIRALITAAD-VLHS-------WTVPSLGV-----------------KIDAV---PGRLNQVGFFINRPG 190 (226)
T ss_pred CceEEEecCCEEEEEEecCc-cccc-------eeccccCc-----------------cccCC---CCcEEEEEEEcCCCE
Confidence 35678899999999887665 4444 44444432 34655 577788899999999
Q ss_pred eeEEeechhhH-hhcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWER-RYLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~H-~d~GMm~~~~V~~~~~ 519 (541)
.|.--|--+-= -|.-|-..++|+++++
T Consensus 191 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 218 (226)
T MTH00139 191 VFYGQCSEICGANHSFMPIVVEAISPKF 218 (226)
T ss_pred EEEEEChhhcCcCcCCCeEEEEEeCHHH
Confidence 99999987743 3556777777777654
No 128
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=28.33 E-value=42 Score=27.58 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=25.2
Q ss_pred EEECCCCcCceEEEecCCEEEEEEEECCCC
Q 009171 50 ILINGQFPGPAIEAVTNDNIIVNLINKLDE 79 (541)
Q Consensus 50 ~~~Ng~~pGP~i~v~~Gd~v~v~~~N~l~~ 79 (541)
..+||+.-=|.=.|+.||.|.|++.|.+-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 368898777888999999999999998643
No 129
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.46 E-value=4.7e+02 Score=23.67 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=41.4
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++.-+.. .|.|.+....+.+ -.-||..-.+.+.+. .+|.|...|+...
T Consensus 73 n~LvLP~g~~Vr~~lTS~DV--IHSF~VP~lgvK~----------------DavPGr~n~l~~~~~-~~G~y~gqCsElC 133 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITATDV--IHSWSVPSLGIKA----------------DAIPGRLHKINTFIL-REGVFYGQCSEMC 133 (162)
T ss_pred CCEEEeCCCEEEEEEEeCcc--ceeeeccccCcee----------------eccCCceEEEEEecC-CCeEEEEEcchhc
Confidence 46788999988887765544 3455555443322 223676667777776 6999999998653
Q ss_pred c
Q 009171 284 T 284 (541)
Q Consensus 284 ~ 284 (541)
+
T Consensus 134 G 134 (162)
T PTZ00047 134 G 134 (162)
T ss_pred C
Confidence 3
No 130
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=27.26 E-value=2.6e+02 Score=23.83 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=32.9
Q ss_pred eEEEecCCEEEEEEEECCCC-----CeeEeeC--CcCCCCC-CCCCCCC--CCCCccCCCCeEEEEEEec
Q 009171 60 AIEAVTNDNIIVNLINKLDE-----PFLITWN--GVKQRRT-TWQDGVL--GTNCPIPPNSNWTYKFQMK 119 (541)
Q Consensus 60 ~i~v~~Gd~v~v~~~N~l~~-----~~~iH~H--G~~~~~~-~~~DG~~--~~q~~i~pG~~~~y~f~~~ 119 (541)
.=.+++|+.+.+.+.=...+ .+.+|+. |+..+-. +..|+=- +..|||..|+.++|.+.++
T Consensus 23 PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 23 PCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeee
Confidence 34567788777776522221 2233332 4433211 1233311 2369999999999999763
No 131
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.85 E-value=44 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=16.7
Q ss_pred eeEEcCCch---------------hhhhcceeeEEEEecC
Q 009171 124 TFNYFPSTK---------------VHRAFGGFGAVNVAQR 148 (541)
Q Consensus 124 t~wYH~H~~---------------~q~~~Gl~G~liV~~~ 148 (541)
.=|||+|.+ .|..+--+-+++|+|.
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~ 173 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPT 173 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCc
Confidence 459999976 2444456667777764
No 132
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=26.10 E-value=1.3e+02 Score=24.34 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccc---e-eeeeEEEEcCCceEEE
Q 009171 213 TYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCL---Q-ESYESIDIHVGQSVAV 264 (541)
Q Consensus 213 ~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~---p-~~~d~v~l~pgeR~dv 264 (541)
.|++||-|.+... +.|-...+.|...||...+ + +.-..=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 4799999999873 4555666666666663321 0 1123346778886543
No 133
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=25.70 E-value=79 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=23.1
Q ss_pred CCccCCCCeEEEEEE-e--cCCceeeEEcCCc
Q 009171 103 NCPIPPNSNWTYKFQ-M--KDQIGTFNYFPST 131 (541)
Q Consensus 103 q~~i~pG~~~~y~f~-~--~~~~Gt~wYH~H~ 131 (541)
..||+||++++-.+. + |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 578999999999984 2 3457999998754
No 134
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.20 E-value=2e+02 Score=28.33 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=55.3
Q ss_pred eEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcce
Q 009171 414 SVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKGV 493 (541)
Q Consensus 414 ~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG~ 493 (541)
+.+.++.|..+++.+...+ -.| .|+|-+-+. .+|.+ ||-.-.+.|.++.||.
T Consensus 174 n~lvlP~~~~v~~~ltS~D-ViH-------Sf~vP~lgv-----------------K~Dai---PGr~n~~~~~~~~~G~ 225 (262)
T MTH00027 174 NRLILPVDTNVRVLITAAD-VLH-------SWTVPSLAV-----------------KMDAV---PGRINETGFLIKRPGI 225 (262)
T ss_pred ceEEEeeCcEEEEEEEcCc-ccc-------ceecccccC-----------------cccCC---CCceeeEEEEcCCcEE
Confidence 4578899999998887665 334 445544432 33444 4666778899999999
Q ss_pred eEEeechhh-HhhcccEEEEEEecCCc
Q 009171 494 WNLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 494 w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
|.-.|+-+- .-|..|-..++|..+++
T Consensus 226 y~g~CsE~CG~~Hs~Mpi~v~vv~~~~ 252 (262)
T MTH00027 226 FYGQCSEICGANHSFMPIVVESVSLSK 252 (262)
T ss_pred EEEEcchhcCcCcCCCeEEEEEECHHH
Confidence 999999884 34667878888877654
No 135
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.08 E-value=1.9e+02 Score=27.78 Aligned_cols=79 Identities=9% Similarity=0.072 Sum_probs=55.6
Q ss_pred eeEEecCCCcEEEEEEEcCCCCCCceeecCCceEEEEecccccCccccccCcCCCCCccceEEeCCCCEEEEEEEcCCcc
Q 009171 413 ASVIPTTLHDYVEIVFQNNETSVQSWHLDGSSFYVVGYGSGTWTADIRKRYNLNDAITRHTVQVYPQSWSAIYVSLDNKG 492 (541)
Q Consensus 413 ~~~~~~~~g~~ve~vi~N~~~~~HP~HlHG~~F~Vl~~g~g~~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~~dnpG 492 (541)
.+.+.++.|+.+++.+...+ -.|.| +|-+-|. ..|.+ ||-.-.+.+.++.||
T Consensus 142 dn~l~lP~~~~v~~~itS~D-ViHSf-------~vP~lg~-----------------K~Dav---PGr~n~~~~~~~~~G 193 (231)
T MTH00080 142 DNRCVLPCDTNIRFCITSSD-VIHSW-------ALPSLSI-----------------KMDAM---SGILSTLCYSFPMPG 193 (231)
T ss_pred eCceEeecCcEEEEEEEeCc-ccccc-------cccccCc-----------------eeecc---CCceEEEEEEEcCce
Confidence 34567899999999888765 34444 4433331 34544 577778889999999
Q ss_pred eeEEeechhh-HhhcccEEEEEEecCCc
Q 009171 493 VWNLRSAIWE-RRYLGQELYLRVSNDER 519 (541)
Q Consensus 493 ~w~~HCHil~-H~d~GMm~~~~V~~~~~ 519 (541)
.+.--|--+- --|..|-..++|.++++
T Consensus 194 ~y~g~CsE~CG~~Hs~M~~~v~vv~~~~ 221 (231)
T MTH00080 194 VFYGQCSEICGANHSFMPIAVEVTLLDN 221 (231)
T ss_pred EEEEEehhhcCcCccCCEEEEEEECHHH
Confidence 9999998774 33567778888877654
No 136
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=24.50 E-value=1.9e+02 Score=24.99 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred EEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccc----eeeeeEEEEcCCceEEE
Q 009171 213 TYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCL----QESYESIDIHVGQSVAV 264 (541)
Q Consensus 213 ~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~----p~~~d~v~l~pgeR~dv 264 (541)
.|++||.|.+.. .+.|-...+.+...||...+ .+.-..=.|.|||.++.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 379999998764 35666777777777765321 12223346777776543
No 137
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=23.92 E-value=1.1e+02 Score=21.35 Aligned_cols=39 Identities=8% Similarity=-0.035 Sum_probs=29.5
Q ss_pred CCccce-EEeCCCCEEEEEEEcCCcceeEEeechhhHhhc
Q 009171 468 AITRHT-VQVYPQSWSAIYVSLDNKGVWNLRSAIWERRYL 506 (541)
Q Consensus 468 p~~rDT-v~vpp~g~~~irf~~dnpG~w~~HCHil~H~d~ 506 (541)
|..+-+ +..+.|+...++++......+=+||..+.|...
T Consensus 6 PL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 6 PLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred cccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 444443 334568888889999998899999999988764
No 138
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=22.82 E-value=45 Score=28.98 Aligned_cols=14 Identities=0% Similarity=-0.021 Sum_probs=9.2
Q ss_pred EEecCCEEEEEEEE
Q 009171 62 EAVTNDNIIVNLIN 75 (541)
Q Consensus 62 ~v~~Gd~v~v~~~N 75 (541)
++++|++|+||..=
T Consensus 43 ~I~~GeTvEIR~~l 56 (137)
T PF12988_consen 43 KIKKGETVEIRCEL 56 (137)
T ss_dssp S--TTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEE
Confidence 34688888888763
No 139
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.58 E-value=4.2e+02 Score=25.39 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=43.5
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+-++.|+.+||++-+... .|.|.+.+... ....-||..-.+.+.++ .+|.|+..|+...
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLGV----------------KVDAVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccCc----------------ceecCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 46889999999999988554 34444444332 22334788888888887 6999999998653
No 140
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=22.55 E-value=1.7e+02 Score=24.85 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=23.2
Q ss_pred CeEEEEEEEEEEEeCC-CCeeeeEEEECCCCcCceE
Q 009171 27 PYRSYTWTVTYGTISP-FGVPQQGILINGQFPGPAI 61 (541)
Q Consensus 27 ~~~~~~l~~~~~~~~~-~g~~~~~~~~Ng~~pGP~i 61 (541)
.....+|-++.++-++ +|++..+.---..-|.|.+
T Consensus 40 ~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~ 75 (131)
T PF10794_consen 40 VVNPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSK 75 (131)
T ss_pred ecccEEEEEecCCCCcccceEEEEEeccccCCCCch
Confidence 3457888888877664 4777666655456666654
No 141
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=22.27 E-value=6.8e+02 Score=25.35 Aligned_cols=74 Identities=8% Similarity=-0.025 Sum_probs=47.8
Q ss_pred ceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCCCCccCCCCeEEEEEEecCCceeeEEcCCch-hhhhc
Q 009171 59 PAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGTNCPIPPNSNWTYKFQMKDQIGTFNYFPSTK-VHRAF 137 (541)
Q Consensus 59 P~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~q~~i~pG~~~~y~f~~~~~~Gt~wYH~H~~-~q~~~ 137 (541)
..|.+..|..|+++++-. -.||--.+.. . +.|.-.-||..-...|. ++++|+|.=.|-.- +.--.
T Consensus 151 NeL~iP~g~pV~f~lTS~----DViHSF~IP~-----L----g~K~damPG~~n~l~~~-a~~~G~Y~G~CaEyCG~gHs 216 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSN----SVMNSFFIPR-----L----GSQIYAMAGMQTRLHLI-ANEPGTYDGISASYSGPGFS 216 (315)
T ss_pred ccEEEecCCEEEEEEEEc----hhhhhhhhhh-----h----CCeeecCCCceeEEEEE-cCCCEEEEEEChhhcCcccc
Confidence 679999999999999877 2443333321 1 11334568988888888 47899998877542 22223
Q ss_pred ceeeEEEEe
Q 009171 138 GGFGAVNVA 146 (541)
Q Consensus 138 Gl~G~liV~ 146 (541)
.|..-+++.
T Consensus 217 ~M~f~v~v~ 225 (315)
T PRK10525 217 GMKFKAIAT 225 (315)
T ss_pred CCeEEEEEE
Confidence 366666665
No 142
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.86 E-value=3.9e+02 Score=20.79 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=15.2
Q ss_pred EecCCEEEEEEEEcCCCCeEEEEE
Q 009171 208 GQKGKTYKFRVSNVGIATSINFRI 231 (541)
Q Consensus 208 v~~G~~~rlRliNa~~~~~~~~~i 231 (541)
.+.|++++|++-..-....+-|.+
T Consensus 3 ~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 3 YRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred ccCCCEEEEEEEeCCCeEEEEEEE
Confidence 467899988887744443434444
No 143
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.75 E-value=1.5e+02 Score=26.76 Aligned_cols=85 Identities=11% Similarity=0.135 Sum_probs=45.1
Q ss_pred ccCCCeEEEEEEEEEEEeCC-----CCeeeeEEEECCCC-cCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCC
Q 009171 23 NAEDPYRSYTWTVTYGTISP-----FGVPQQGILINGQF-PGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQ 96 (541)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~~~-----~g~~~~~~~~Ng~~-pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~ 96 (541)
.|-.....|-++.++....- .-...+-+.+.|.+ +|-..|-..|.+|.++++.. .....+..-|+ .+.-+.
T Consensus 28 ~al~~n~~yF~tPsev~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~-~~~v~V~Y~Gi--lPDlFr 104 (159)
T PRK13150 28 YALRANIDLFYTPGEILYGKRETQQLPAVGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDA-EGSVTVSYEGI--LPDLFR 104 (159)
T ss_pred HHHhhCccEEeCHHHHhccccccccCcCCCCEEEEeeEEeCCcEEECCCCcEEEEEEEcC-CcEEEEEEecc--CCcccc
Confidence 34444455666666643100 00122334445543 56666544566788888765 44567778887 555677
Q ss_pred CCCCCC-CCccCCCC
Q 009171 97 DGVLGT-NCPIPPNS 110 (541)
Q Consensus 97 DG~~~~-q~~i~pG~ 110 (541)
+|...+ +-.+.+++
T Consensus 105 EG~gVVveG~~~~~g 119 (159)
T PRK13150 105 EGQGVVVQGTLEKGN 119 (159)
T ss_pred CCCeEEEEEEECCCC
Confidence 776443 33333333
No 144
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=21.35 E-value=68 Score=32.80 Aligned_cols=53 Identities=21% Similarity=0.373 Sum_probs=27.5
Q ss_pred CCCCCCCC-CCccCCCCeEEEEEEec-CCceeeEEcCCchhhhhcceeeE---EEEec
Q 009171 95 WQDGVLGT-NCPIPPNSNWTYKFQMK-DQIGTFNYFPSTKVHRAFGGFGA---VNVAQ 147 (541)
Q Consensus 95 ~~DG~~~~-q~~i~pG~~~~y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~---liV~~ 147 (541)
++.|.|.. ...+..|+.+.|+..+. -.+|+|--|.-...+-...+.|+ +.|++
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEec
Confidence 34444443 45789999988887762 46999766655555555556565 45554
No 145
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=20.94 E-value=51 Score=22.95 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.2
Q ss_pred CCcchhHHHHHHHH
Q 009171 1 MKGAIFLEILIGIL 14 (541)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (541)
||-++|+-+++|++
T Consensus 3 lKKsllLlfflG~I 16 (46)
T PF03032_consen 3 LKKSLLLLFFLGTI 16 (46)
T ss_pred chHHHHHHHHHHHc
Confidence 67777777777665
No 146
>cd08068 MPN_BRCC36 Mov34/MPN/PAD-1 family: BRCC36, a subunit of BRCA1-A complex. BRCC36 (BRCA1-A complex subunit BRCC36; BRCA1/BRCA2-containing complex subunit 36; BRCA1/BRCA2-containing complex subunit 3; BRCC3; BRISC complex subunit BRCC36; BRCC36 isopeptidase complex; Lys-63-specific deubiquitinase BRCC36) and BRCC36-like domains are members of JAMM/MPN+ deubiquitinases (DUBs), possibly with Zn2+-dependent ubiquitin isopeptidase activity. BRCC36 is part of the BRCA1/BRCA2/BARD1-containing nuclear complex that displays an E3 ubiquitin ligase activity. It is targeted to DNA damage foci after irradiation; RAP80 recruits the Abraxas-BRCC36-BRCA1-BARD1 complex to DNA double strand breaks (DSBs) for DNA repair through specific recognition of Lys 63-linked polyubiquitinated proteins by its tandem ubiquitin-interacting motifs. A new protein, MERIT40 (mediator of RAP80 interactions and targeting 40 kDa), also named NBA1 (new component of the BRCA1 A complex), exists in the same BRCA1-contai
Probab=20.71 E-value=69 Score=31.08 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=6.8
Q ss_pred eEEcCCch
Q 009171 125 FNYFPSTK 132 (541)
Q Consensus 125 ~wYH~H~~ 132 (541)
=|||||.+
T Consensus 93 GwYHSHP~ 100 (244)
T cd08068 93 GWYHSHPH 100 (244)
T ss_pred EEEecCCC
Confidence 59999985
No 147
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=20.53 E-value=3.2e+02 Score=27.63 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=45.2
Q ss_pred ccEEEecCCEEEEEEEEcCCCCeEEEEEcCceeEEEeecCcccceeeeeEEEEcCCceEEEEEEeCCCCceeEEEEeccc
Q 009171 204 LSFTGQKGKTYKFRVSNVGIATSINFRIQGHTLTLVEVEGAHCLQESYESIDIHVGQSVAVVVAMHGPPKDYYIVASTRF 283 (541)
Q Consensus 204 p~l~v~~G~~~rlRliNa~~~~~~~~~i~~h~~~via~DG~~~~p~~~d~v~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 283 (541)
..+.++.|+.+||++-..... +.|.|.. -.-.+..-||..-.+-+.++ .+|.|...|..+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi--HSF~IP~----------------Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM--NSFFIPR----------------LGSQIYAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh--hhhhhhh----------------hCCeeecCCCceeEEEEEcC-CCEEEEEEChhhc
Confidence 478899999999999876653 3344432 23344445788888888888 6999999998764
Q ss_pred cC
Q 009171 284 TK 285 (541)
Q Consensus 284 ~~ 285 (541)
+.
T Consensus 212 G~ 213 (315)
T PRK10525 212 GP 213 (315)
T ss_pred Cc
Confidence 43
No 148
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=20.42 E-value=5e+02 Score=24.89 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=11.0
Q ss_pred CceEEEecCCEEEEEEE
Q 009171 58 GPAIEAVTNDNIIVNLI 74 (541)
Q Consensus 58 GP~i~v~~Gd~v~v~~~ 74 (541)
-|..|++.|+.-.+|+.
T Consensus 79 PPlfrl~~~~~~~lRI~ 95 (228)
T PRK15188 79 PPLFVIQPKKENILRIM 95 (228)
T ss_pred CCeEEECCCCceEEEEE
Confidence 35667777766666655
No 149
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.28 E-value=41 Score=30.57 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=24.1
Q ss_pred EEEecCCEEEEEEEECCCCCeeEeeCCcC
Q 009171 61 IEAVTNDNIIVNLINKLDEPFLITWNGVK 89 (541)
Q Consensus 61 i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~ 89 (541)
.....++.+.+.+.|++....++||||+-
T Consensus 71 ~~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 71 LPGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred ccccCCCCcEEeccchhheeeecccceEE
Confidence 34456678889999999999999999984
No 150
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.05 E-value=28 Score=30.27 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=36.4
Q ss_pred CeEEEEEEEEEEEeCCC--CeeeeEEEECCCC-cCceEEEecCCEEEEEEEECCCCCeeEeeCCcCCCCCCCCCCCCCC
Q 009171 27 PYRSYTWTVTYGTISPF--GVPQQGILINGQF-PGPAIEAVTNDNIIVNLINKLDEPFLITWNGVKQRRTTWQDGVLGT 102 (541)
Q Consensus 27 ~~~~~~l~~~~~~~~~~--g~~~~~~~~Ng~~-pGP~i~v~~Gd~v~v~~~N~l~~~~~iH~HG~~~~~~~~~DG~~~~ 102 (541)
....|-+++++...... |...+ +.|.+ +|..-+-..+..+++.++.. .....++.+|. .+....+|...+
T Consensus 31 ~~~~yy~t~se~~~~~~~~~~~vr---v~G~V~~gSv~~~~~~~~~~F~i~D~-~~~i~V~Y~G~--~Pd~F~eg~~VV 103 (131)
T PF03100_consen 31 DSAVYYLTPSELAAEPQKVGRKVR---VGGLVVEGSVEYDPDGNTLTFTITDG-GKEIPVVYTGP--LPDLFREGQGVV 103 (131)
T ss_dssp -SSS-EE-TTTTTTTST-TTSEEE---EEEEEECTTEEE-TTSSEEEEEEE-S-S-EEEEEEES----CTT--TTSEEE
T ss_pred ccceEEcCHHHHhhccccCCceEE---EeeEEccCCEEEcCCCCEEEEEEEEC-CcEEEEEECCC--CCccccCCCeEE
Confidence 33445556555443332 44433 33433 45444444789999999977 45579999997 555677776544
Done!