Query 009172
Match_columns 541
No_of_seqs 538 out of 3558
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:26:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ri6_A O-acetylhomoserine sulf 100.0 1.1E-65 3.6E-70 550.1 37.3 385 150-539 24-430 (430)
2 1qgn_A Protein (cystathionine 100.0 1.4E-63 4.6E-68 535.8 45.0 396 145-541 49-445 (445)
3 3ndn_A O-succinylhomoserine su 100.0 2E-63 6.7E-68 530.2 42.5 384 152-539 26-414 (414)
4 3nmy_A Xometc, cystathionine g 100.0 1E-62 3.5E-67 522.4 39.8 376 152-539 19-397 (400)
5 2fq6_A Cystathionine beta-lyas 100.0 4.2E-61 1.4E-65 512.4 40.1 383 152-541 25-414 (415)
6 3qhx_A Cystathionine gamma-syn 100.0 1.5E-58 5.2E-63 488.6 43.4 375 152-539 17-392 (392)
7 3acz_A Methionine gamma-lyase; 100.0 3E-57 1E-61 477.8 44.2 384 152-541 5-389 (389)
8 3cog_A Cystathionine gamma-lya 100.0 1.1E-56 3.7E-61 476.4 42.4 377 152-540 18-397 (403)
9 2ctz_A O-acetyl-L-homoserine s 100.0 4.1E-55 1.4E-59 466.6 39.1 384 153-539 3-421 (421)
10 1n8p_A Cystathionine gamma-lya 100.0 1.6E-54 5.6E-59 458.0 37.3 376 152-540 7-390 (393)
11 1gc0_A Methionine gamma-lyase; 100.0 5.9E-54 2E-58 453.5 39.1 386 152-540 9-396 (398)
12 1e5e_A MGL, methionine gamma-l 100.0 5.4E-52 1.8E-56 440.2 42.8 385 152-540 7-394 (404)
13 2cb1_A O-acetyl homoserine sul 100.0 2.6E-51 9E-56 435.4 44.2 381 153-541 3-412 (412)
14 2rfv_A Methionine gamma-lyase; 100.0 5.1E-49 1.8E-53 415.3 42.0 386 152-540 8-395 (398)
15 1cs1_A CGS, protein (cystathio 100.0 2.1E-47 7E-52 401.1 43.0 378 152-540 4-382 (386)
16 1ibj_A CBL, cystathionine beta 100.0 4.8E-47 1.6E-51 409.5 41.7 375 153-541 87-462 (464)
17 1pff_A Methionine gamma-lyase; 100.0 8.4E-41 2.9E-45 342.5 35.3 326 214-541 2-330 (331)
18 3i16_A Aluminum resistance pro 100.0 7.3E-35 2.5E-39 310.8 28.5 324 199-541 65-425 (427)
19 3hvy_A Cystathionine beta-lyas 100.0 3.3E-34 1.1E-38 305.7 29.1 324 199-541 66-425 (427)
20 3jzl_A Putative cystathionine 100.0 9.5E-34 3.2E-38 300.8 27.6 320 199-540 51-407 (409)
21 1bs0_A Protein (8-amino-7-oxon 100.0 4.6E-27 1.6E-31 245.0 32.9 284 209-540 83-382 (384)
22 1t3i_A Probable cysteine desul 100.0 1.9E-27 6.6E-32 249.8 28.8 305 202-539 64-407 (420)
23 1fc4_A 2-amino-3-ketobutyrate 100.0 4.2E-27 1.4E-31 246.8 31.3 284 209-539 89-395 (401)
24 3ffh_A Histidinol-phosphate am 100.0 1.3E-26 4.3E-31 239.8 33.4 281 204-539 61-360 (363)
25 3cai_A Possible aminotransfera 100.0 1.7E-27 5.7E-32 249.9 26.9 303 202-541 61-405 (406)
26 3get_A Histidinol-phosphate am 100.0 3E-27 1E-31 244.7 27.4 282 204-538 59-364 (365)
27 4hvk_A Probable cysteine desul 100.0 6E-28 2.1E-32 249.5 21.9 307 201-539 34-371 (382)
28 3tqx_A 2-amino-3-ketobutyrate 100.0 1.2E-26 3.9E-31 242.5 31.9 286 208-540 86-395 (399)
29 1jg8_A L-ALLO-threonine aldola 100.0 1.4E-27 4.8E-32 245.3 24.4 284 208-539 36-344 (347)
30 3euc_A Histidinol-phosphate am 100.0 3.6E-27 1.2E-31 244.3 27.1 284 204-538 61-365 (367)
31 3lvm_A Cysteine desulfurase; s 100.0 5.7E-27 1.9E-31 247.2 28.5 305 204-539 62-397 (423)
32 3ly1_A Putative histidinol-pho 100.0 6.1E-27 2.1E-31 241.1 27.0 283 204-539 45-350 (354)
33 3op7_A Aminotransferase class 100.0 6.2E-27 2.1E-31 243.3 26.2 291 201-540 56-370 (375)
34 3ht4_A Aluminum resistance pro 100.0 4.2E-27 1.4E-31 251.4 25.4 258 207-480 62-345 (431)
35 1kmj_A Selenocysteine lyase; p 100.0 7.6E-27 2.6E-31 243.9 26.8 295 208-539 65-399 (406)
36 2w8t_A SPT, serine palmitoyltr 100.0 2.2E-26 7.6E-31 244.6 30.7 285 208-538 107-408 (427)
37 3dzz_A Putative pyridoxal 5'-p 100.0 2.3E-26 8E-31 239.5 29.7 298 200-540 56-388 (391)
38 3vax_A Putative uncharacterize 100.0 8.9E-28 3E-32 251.3 18.5 307 201-539 54-398 (400)
39 1fg7_A Histidinol phosphate am 100.0 4E-26 1.4E-30 236.7 30.5 279 205-540 53-353 (356)
40 3a2b_A Serine palmitoyltransfe 100.0 9.4E-26 3.2E-30 236.5 33.0 285 208-540 86-391 (398)
41 2e7j_A SEP-tRNA:Cys-tRNA synth 100.0 3.9E-27 1.3E-31 243.7 21.3 289 202-538 45-363 (371)
42 2dr1_A PH1308 protein, 386AA l 99.9 6.2E-26 2.1E-30 235.6 30.3 293 204-539 47-377 (386)
43 4eb5_A Probable cysteine desul 99.9 2.4E-26 8.3E-31 238.4 24.5 302 208-539 41-371 (382)
44 3zrp_A Serine-pyruvate aminotr 99.9 5.5E-26 1.9E-30 235.6 26.6 287 208-539 33-361 (384)
45 3hdo_A Histidinol-phosphate am 99.9 3.4E-26 1.2E-30 236.8 24.5 282 204-539 59-349 (360)
46 3kki_A CAI-1 autoinducer synth 99.9 1.2E-25 3.9E-30 237.0 28.7 280 210-538 104-397 (409)
47 1elu_A L-cysteine/L-cystine C- 99.9 1.1E-25 3.7E-30 234.1 28.0 291 206-541 53-388 (390)
48 3nra_A Aspartate aminotransfer 99.9 2.2E-26 7.4E-31 241.3 22.7 289 207-539 79-403 (407)
49 4dq6_A Putative pyridoxal phos 99.9 2.3E-25 7.7E-30 232.0 29.8 280 200-524 61-374 (391)
50 3frk_A QDTB; aminotransferase, 99.9 1.6E-26 5.4E-31 240.4 20.6 303 207-540 33-363 (373)
51 2z61_A Probable aspartate amin 99.9 1.4E-25 4.8E-30 232.8 25.8 264 211-524 67-352 (370)
52 3kax_A Aminotransferase, class 99.9 3.8E-25 1.3E-29 229.6 29.0 280 201-524 54-366 (383)
53 3ftb_A Histidinol-phosphate am 99.9 4E-25 1.4E-29 227.9 28.8 283 205-540 56-360 (361)
54 1b9h_A AHBA synthase, protein 99.9 8E-26 2.7E-30 236.2 23.5 308 204-539 32-382 (388)
55 1b5p_A Protein (aspartate amin 99.9 7.7E-25 2.6E-29 229.1 30.9 271 211-529 69-370 (385)
56 3uwc_A Nucleotide-sugar aminot 99.9 4.2E-26 1.4E-30 236.6 20.9 300 208-539 36-365 (374)
57 1eg5_A Aminotransferase; PLP-d 99.9 1.2E-25 4E-30 233.1 23.8 302 208-540 42-375 (384)
58 1lc5_A COBD, L-threonine-O-3-p 99.9 2.9E-25 1E-29 230.1 26.8 282 206-539 55-358 (364)
59 2dou_A Probable N-succinyldiam 99.9 3.5E-25 1.2E-29 230.3 27.1 285 206-539 58-372 (376)
60 3ju7_A Putative PLP-dependent 99.9 2.6E-25 9E-30 233.3 26.2 304 209-540 35-370 (377)
61 3nyt_A Aminotransferase WBPE; 99.9 3.5E-25 1.2E-29 230.2 26.6 302 208-540 33-359 (367)
62 1c7n_A Cystalysin; transferase 99.9 5.4E-25 1.8E-29 230.5 28.2 285 212-539 68-391 (399)
63 3fkd_A L-threonine-O-3-phospha 99.9 2.7E-25 9.3E-30 228.9 24.3 282 204-539 44-340 (350)
64 3g0t_A Putative aminotransfera 99.9 2.4E-25 8.2E-30 236.0 24.5 295 206-539 77-435 (437)
65 1j32_A Aspartate aminotransfer 99.9 8.3E-25 2.8E-29 228.2 28.0 282 211-539 68-385 (388)
66 3isl_A Purine catabolism prote 99.9 3.5E-25 1.2E-29 232.5 25.2 290 208-540 42-389 (416)
67 3l8a_A METC, putative aminotra 99.9 2.5E-25 8.7E-30 235.7 24.2 296 200-538 90-419 (421)
68 3ruy_A Ornithine aminotransfer 99.9 6.7E-25 2.3E-29 229.5 26.9 289 201-539 69-388 (392)
69 1v2d_A Glutamine aminotransfer 99.9 2.6E-24 9E-29 224.1 31.3 271 206-524 56-352 (381)
70 3lws_A Aromatic amino acid bet 99.9 2.7E-25 9.3E-30 229.3 23.6 255 209-486 46-319 (357)
71 3h14_A Aminotransferase, class 99.9 5.3E-25 1.8E-29 230.2 25.7 282 212-539 70-380 (391)
72 3p1t_A Putative histidinol-pho 99.9 1.4E-24 4.6E-29 221.8 28.0 275 204-537 45-333 (337)
73 3ffr_A Phosphoserine aminotran 99.9 1.1E-24 3.8E-29 223.9 27.5 282 210-540 43-359 (362)
74 3dyd_A Tyrosine aminotransfera 99.9 1.3E-24 4.6E-29 230.8 29.0 284 209-539 95-422 (427)
75 1o4s_A Aspartate aminotransfer 99.9 1.1E-24 3.8E-29 228.2 27.8 264 211-524 79-370 (389)
76 3fvs_A Kynurenine--oxoglutarat 99.9 4.8E-25 1.7E-29 232.6 25.0 289 212-540 69-421 (422)
77 3fdb_A Beta C-S lyase, putativ 99.9 1.4E-25 4.7E-30 232.7 20.3 281 213-540 61-375 (377)
78 3nnk_A Ureidoglycine-glyoxylat 99.9 5.3E-25 1.8E-29 230.8 24.9 287 210-539 46-388 (411)
79 2x5d_A Probable aminotransfera 99.9 1.5E-24 5E-29 228.8 28.1 286 209-539 74-396 (412)
80 3jtx_A Aminotransferase; NP_28 99.9 1.2E-24 4E-29 227.5 26.7 275 212-529 68-383 (396)
81 1u08_A Hypothetical aminotrans 99.9 6.2E-24 2.1E-28 221.7 31.9 285 211-540 68-385 (386)
82 3pj0_A LMO0305 protein; struct 99.9 5.6E-25 1.9E-29 226.9 23.6 285 208-535 46-353 (359)
83 3e2y_A Kynurenine-oxoglutarate 99.9 9.8E-25 3.4E-29 229.1 25.8 294 205-540 55-408 (410)
84 3f9t_A TDC, L-tyrosine decarbo 99.9 4.8E-25 1.6E-29 228.9 23.1 277 209-539 68-392 (397)
85 3aow_A Putative uncharacterize 99.9 2.1E-24 7.1E-29 231.3 28.7 287 210-539 118-443 (448)
86 1vjo_A Alanine--glyoxylate ami 99.9 9.3E-25 3.2E-29 228.0 25.2 292 204-538 61-388 (393)
87 2z9v_A Aspartate aminotransfer 99.9 1.3E-24 4.3E-29 226.7 26.1 289 210-540 42-370 (392)
88 2aeu_A Hypothetical protein MJ 99.9 5.9E-25 2E-29 230.0 23.6 205 212-426 60-279 (374)
89 2o1b_A Aminotransferase, class 99.9 9.2E-25 3.1E-29 230.3 25.2 284 210-539 85-401 (404)
90 1gd9_A Aspartate aminotransfer 99.9 2.1E-24 7.2E-29 225.2 27.7 284 211-539 64-384 (389)
91 2r2n_A Kynurenine/alpha-aminoa 99.9 5.4E-24 1.8E-28 225.9 31.1 288 212-539 84-422 (425)
92 2zyj_A Alpha-aminodipate amino 99.9 7.4E-25 2.5E-29 229.7 24.0 287 210-539 74-391 (397)
93 3ele_A Amino transferase; RER0 99.9 1.6E-24 5.5E-29 226.8 26.0 279 211-539 77-394 (398)
94 1iug_A Putative aspartate amin 99.9 1.7E-24 5.8E-29 221.9 25.6 280 210-538 34-341 (352)
95 3cq5_A Histidinol-phosphate am 99.9 2.7E-24 9.4E-29 223.4 27.3 278 206-538 65-365 (369)
96 2bwn_A 5-aminolevulinate synth 99.9 6.4E-24 2.2E-28 222.7 30.3 282 208-539 89-394 (401)
97 3kgw_A Alanine-glyoxylate amin 99.9 5.5E-25 1.9E-29 228.8 21.2 290 209-540 55-387 (393)
98 2huf_A Alanine glyoxylate amin 99.9 2.6E-24 8.8E-29 224.4 26.2 293 204-539 46-381 (393)
99 2x5f_A Aspartate_tyrosine_phen 99.9 2.7E-24 9.3E-29 228.0 26.6 284 206-540 83-428 (430)
100 3dr4_A Putative perosamine syn 99.9 2.3E-24 7.8E-29 225.6 25.4 305 207-540 53-388 (391)
101 2oga_A Transaminase; PLP-depen 99.9 8.4E-25 2.9E-29 230.0 22.2 212 209-430 62-297 (399)
102 2zc0_A Alanine glyoxylate tran 99.9 2.9E-24 9.9E-29 225.6 26.1 287 211-540 76-403 (407)
103 1vp4_A Aminotransferase, putat 99.9 1.2E-24 4E-29 230.9 22.9 286 211-539 86-416 (425)
104 3ezs_A Aminotransferase ASPB; 99.9 1.2E-24 4E-29 225.9 21.7 277 212-539 61-373 (376)
105 1d2f_A MALY protein; aminotran 99.9 2.3E-23 7.8E-28 217.7 31.2 284 212-539 65-387 (390)
106 1mdo_A ARNB aminotransferase; 99.9 7.1E-24 2.4E-28 221.3 27.2 302 208-539 37-380 (393)
107 3ppl_A Aspartate aminotransfer 99.9 4.1E-24 1.4E-28 226.6 25.6 289 210-539 78-418 (427)
108 1iay_A ACC synthase 2, 1-amino 99.9 6.7E-24 2.3E-28 224.9 26.8 290 205-539 77-425 (428)
109 1yiz_A Kynurenine aminotransfe 99.9 2.9E-23 9.8E-28 219.9 31.4 287 212-538 79-426 (429)
110 1m32_A 2-aminoethylphosphonate 99.9 2E-24 6.7E-29 222.1 21.6 285 210-539 37-359 (366)
111 2gb3_A Aspartate aminotransfer 99.9 1E-23 3.5E-28 222.2 27.5 285 211-539 80-400 (409)
112 2ch1_A 3-hydroxykynurenine tra 99.9 7.9E-24 2.7E-28 221.0 25.9 294 204-539 45-381 (396)
113 1bw0_A TAT, protein (tyrosine 99.9 1.4E-23 4.9E-28 221.1 27.7 283 210-539 75-411 (416)
114 1xi9_A Putative transaminase; 99.9 1.6E-23 5.6E-28 220.3 28.1 284 211-540 79-402 (406)
115 2o0r_A RV0858C (N-succinyldiam 99.9 2.7E-23 9.3E-28 219.0 29.8 253 212-488 64-351 (411)
116 2bkw_A Alanine-glyoxylate amin 99.9 1.8E-23 6E-28 217.0 27.8 286 211-540 39-383 (385)
117 3b46_A Aminotransferase BNA3; 99.9 2.4E-23 8.1E-28 222.7 28.9 286 211-538 96-440 (447)
118 2fnu_A Aminotransferase; prote 99.9 9.8E-24 3.3E-28 218.4 25.0 304 208-539 30-366 (375)
119 3if2_A Aminotransferase; YP_26 99.9 7.6E-24 2.6E-28 225.3 24.2 297 210-539 83-438 (444)
120 1v72_A Aldolase; PLP-dependent 99.9 1.4E-22 4.8E-27 207.9 31.8 277 208-539 41-347 (356)
121 3ez1_A Aminotransferase MOCR f 99.9 3E-23 1E-27 219.3 27.5 288 210-539 70-413 (423)
122 2yrr_A Aminotransferase, class 99.9 1.1E-23 3.8E-28 215.4 23.4 284 210-539 33-351 (353)
123 4adb_A Succinylornithine trans 99.9 1.5E-23 5E-28 219.9 24.2 291 202-539 73-398 (406)
124 2eh6_A Acoat, acetylornithine 99.9 1.5E-23 5.2E-28 217.4 24.1 281 206-540 66-373 (375)
125 3f0h_A Aminotransferase; RER07 99.9 2.8E-23 9.5E-28 215.3 25.8 168 210-382 52-229 (376)
126 3nx3_A Acoat, acetylornithine 99.9 2.8E-23 9.7E-28 217.5 25.7 290 200-540 68-394 (395)
127 3piu_A 1-aminocyclopropane-1-c 99.9 3.1E-23 1.1E-27 220.4 25.9 288 206-539 81-430 (435)
128 3g7q_A Valine-pyruvate aminotr 99.9 3.8E-23 1.3E-27 217.5 26.1 295 210-539 75-411 (417)
129 2c81_A Glutamine-2-deoxy-scyll 99.9 1.4E-22 4.8E-27 214.2 30.1 210 211-431 43-290 (418)
130 3a9z_A Selenocysteine lyase; P 99.9 5.1E-23 1.7E-27 218.0 26.1 307 209-539 60-426 (432)
131 3tcm_A Alanine aminotransferas 99.9 1.7E-22 5.8E-27 219.6 29.1 287 211-540 135-493 (500)
132 1qz9_A Kynureninase; kynurenin 99.9 8.1E-23 2.8E-27 214.9 25.4 251 209-482 70-365 (416)
133 1uu1_A Histidinol-phosphate am 99.9 1.2E-22 4E-27 208.3 25.9 265 206-540 52-333 (335)
134 3b8x_A WBDK, pyridoxamine 5-ph 99.9 7.8E-23 2.7E-27 214.0 25.0 302 208-538 32-389 (390)
135 3t18_A Aminotransferase class 99.9 1.2E-22 4.2E-27 213.9 26.2 275 211-540 80-409 (413)
136 3d6k_A Putative aminotransfera 99.9 7.4E-23 2.5E-27 216.9 24.6 292 206-539 71-416 (422)
137 1vef_A Acetylornithine/acetyl- 99.9 5E-23 1.7E-27 215.5 20.9 283 206-539 83-391 (395)
138 3qgu_A LL-diaminopimelate amin 99.9 5.4E-23 1.9E-27 219.2 20.9 283 210-539 111-438 (449)
139 3e9k_A Kynureninase; kynurenin 99.9 4.7E-23 1.6E-27 221.2 20.2 284 210-539 111-455 (465)
140 3rq1_A Aminotransferase class 99.9 2.8E-22 9.4E-27 211.6 25.6 274 212-540 82-414 (418)
141 3ihj_A Alanine aminotransferas 99.9 6.8E-22 2.3E-26 214.8 28.9 216 211-431 134-406 (498)
142 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.9 2.5E-22 8.5E-27 214.0 24.8 310 207-540 59-431 (437)
143 3mad_A Sphingosine-1-phosphate 99.9 3.1E-22 1.1E-26 217.8 25.9 275 213-540 142-468 (514)
144 3hbx_A GAD 1, glutamate decarb 99.9 4.1E-22 1.4E-26 216.7 26.8 284 214-539 99-442 (502)
145 2ord_A Acoat, acetylornithine 99.9 4.6E-23 1.6E-27 216.0 18.0 286 207-541 79-397 (397)
146 1svv_A Threonine aldolase; str 99.9 4.7E-22 1.6E-26 204.0 25.0 285 201-539 40-352 (359)
147 2dkj_A Serine hydroxymethyltra 99.9 2.9E-22 1E-26 209.8 23.8 292 208-540 63-387 (407)
148 2po3_A 4-dehydrase; external a 99.9 3.9E-21 1.3E-25 203.7 30.8 210 209-430 51-283 (424)
149 1z7d_A Ornithine aminotransfer 99.9 1.1E-21 3.8E-26 209.1 26.7 289 207-539 104-427 (433)
150 3mc6_A Sphingosine-1-phosphate 99.9 6.7E-22 2.3E-26 214.0 25.3 277 212-540 109-436 (497)
151 3ke3_A Putative serine-pyruvat 99.9 1.4E-21 4.7E-26 204.4 26.0 291 209-540 34-375 (379)
152 2oat_A Ornithine aminotransfer 99.9 3.1E-21 1E-25 206.2 29.2 288 207-540 115-438 (439)
153 3ei9_A LL-diaminopimelate amin 99.9 8.2E-22 2.8E-26 209.0 24.4 268 210-524 98-409 (432)
154 2pb2_A Acetylornithine/succiny 99.9 1.4E-21 4.8E-26 207.3 25.3 285 206-540 95-417 (420)
155 1o69_A Aminotransferase; struc 99.9 6.5E-21 2.2E-25 200.1 30.0 303 209-540 31-382 (394)
156 7aat_A Aspartate aminotransfer 99.9 2.4E-21 8.2E-26 203.1 25.2 212 211-427 72-336 (401)
157 3n0l_A Serine hydroxymethyltra 99.9 2.7E-21 9.2E-26 203.2 25.5 286 214-539 75-387 (417)
158 2c0r_A PSAT, phosphoserine ami 99.9 1.1E-21 3.8E-26 202.8 21.8 274 211-539 50-355 (362)
159 3bwn_A AT1G70560, L-tryptophan 99.9 1.2E-21 4.3E-26 205.9 22.4 282 213-539 71-381 (391)
160 3f6t_A Aspartate aminotransfer 99.9 1.2E-21 4.1E-26 214.7 22.7 159 211-375 139-330 (533)
161 2dgk_A GAD-beta, GADB, glutama 99.9 6.2E-21 2.1E-25 204.1 27.0 287 212-539 83-432 (452)
162 1w23_A Phosphoserine aminotran 99.9 2.7E-22 9.1E-27 206.7 15.2 274 211-539 49-354 (360)
163 1ajs_A Aspartate aminotransfer 99.9 1.1E-20 3.7E-25 198.8 27.1 215 208-427 72-344 (412)
164 3dxv_A Alpha-amino-epsilon-cap 99.9 4.3E-21 1.5E-25 204.1 23.8 292 201-540 77-424 (439)
165 3meb_A Aspartate aminotransfer 99.9 8.3E-21 2.9E-25 203.1 25.6 225 200-427 86-371 (448)
166 3gbx_A Serine hydroxymethyltra 99.9 3E-21 1E-25 202.7 21.1 253 210-485 76-349 (420)
167 2z67_A O-phosphoseryl-tRNA(SEC 99.9 1.3E-20 4.3E-25 202.3 26.4 283 211-540 134-453 (456)
168 3b1d_A Betac-S lyase; HET: PLP 99.8 5.3E-24 1.8E-28 223.0 0.0 284 212-539 68-391 (392)
169 2vi8_A Serine hydroxymethyltra 99.9 3.2E-21 1.1E-25 201.8 20.6 292 208-539 63-385 (405)
170 1s0a_A Adenosylmethionine-8-am 99.9 1.2E-20 4.1E-25 200.1 24.8 289 204-539 80-418 (429)
171 3asa_A LL-diaminopimelate amin 99.9 1E-20 3.5E-25 198.7 23.6 213 209-427 74-315 (400)
172 2ez2_A Beta-tyrosinase, tyrosi 99.9 1.9E-20 6.5E-25 199.9 26.0 210 208-426 73-331 (456)
173 1ax4_A Tryptophanase; tryptoph 99.9 1.3E-20 4.4E-25 201.7 24.3 253 208-485 74-390 (467)
174 1sff_A 4-aminobutyrate aminotr 99.9 1.3E-20 4.4E-25 198.9 24.0 286 205-539 79-422 (426)
175 1wyu_B Glycine dehydrogenase s 99.9 2.7E-20 9.2E-25 200.8 26.8 211 211-427 108-363 (474)
176 1rv3_A Serine hydroxymethyltra 99.9 3.8E-21 1.3E-25 208.1 19.6 210 214-430 94-346 (483)
177 3ecd_A Serine hydroxymethyltra 99.9 3.2E-20 1.1E-24 195.2 25.8 249 214-485 82-350 (425)
178 2eo5_A 419AA long hypothetical 99.9 2.6E-20 8.9E-25 197.3 24.9 283 205-540 81-417 (419)
179 3fsl_A Aromatic-amino-acid ami 99.9 3.5E-20 1.2E-24 193.5 24.2 213 210-427 70-333 (397)
180 3a8u_X Omega-amino acid--pyruv 99.9 7.1E-20 2.4E-24 195.4 26.3 289 206-540 89-446 (449)
181 2q7w_A Aspartate aminotransfer 99.9 3.1E-20 1.1E-24 193.9 23.0 215 208-427 67-332 (396)
182 1yaa_A Aspartate aminotransfer 99.9 4.1E-20 1.4E-24 194.5 24.0 214 209-427 72-344 (412)
183 2fyf_A PSAT, phosphoserine ami 99.9 3.3E-20 1.1E-24 194.7 22.9 285 210-540 78-397 (398)
184 3h7f_A Serine hydroxymethyltra 99.9 2.4E-20 8.1E-25 199.5 22.0 209 213-427 93-321 (447)
185 2a7v_A Serine hydroxymethyltra 99.9 1.4E-20 4.7E-25 203.8 20.3 291 208-539 94-439 (490)
186 4eu1_A Mitochondrial aspartate 99.8 4E-20 1.4E-24 194.6 22.3 214 209-427 78-344 (409)
187 2x3l_A ORN/Lys/Arg decarboxyla 99.8 7E-21 2.4E-25 204.0 16.1 166 201-378 48-230 (446)
188 4f4e_A Aromatic-amino-acid ami 99.8 1.5E-19 5E-24 191.2 25.9 213 210-427 92-355 (420)
189 2hox_A ALLIIN lyase 1; cystein 99.8 2.1E-20 7E-25 199.2 19.0 269 212-524 102-406 (427)
190 1zod_A DGD, 2,2-dialkylglycine 99.8 1.9E-19 6.6E-24 190.8 25.7 290 205-539 80-430 (433)
191 2ay1_A Aroat, aromatic amino a 99.8 4.4E-20 1.5E-24 192.8 20.1 213 210-427 69-329 (394)
192 3vp6_A Glutamate decarboxylase 99.8 2E-19 6.8E-24 196.0 26.1 221 207-432 128-413 (511)
193 3i4j_A Aminotransferase, class 99.8 2.6E-19 8.8E-24 189.8 26.1 294 206-540 68-427 (430)
194 1c4k_A Protein (ornithine deca 99.8 1.5E-19 5.1E-24 204.1 25.3 218 208-431 171-443 (730)
195 3gju_A Putative aminotransfera 99.8 5.7E-19 1.9E-23 189.4 28.7 291 202-539 87-454 (460)
196 4a6r_A Omega transaminase; tra 99.8 3.4E-19 1.2E-23 191.1 26.6 289 202-539 86-447 (459)
197 1js3_A DDC;, DOPA decarboxylas 99.8 1.2E-19 4.1E-24 196.0 22.8 245 209-477 108-428 (486)
198 3tfu_A Adenosylmethionine-8-am 99.8 8.7E-20 3E-24 196.1 21.0 290 204-540 112-452 (457)
199 3n5m_A Adenosylmethionine-8-am 99.8 3.2E-19 1.1E-23 190.6 24.7 296 202-540 83-451 (452)
200 3l44_A Glutamate-1-semialdehyd 99.8 1.8E-19 6E-24 191.3 22.3 286 206-540 91-429 (434)
201 2epj_A Glutamate-1-semialdehyd 99.8 1.3E-19 4.4E-24 192.5 21.2 259 206-486 92-401 (434)
202 2okj_A Glutamate decarboxylase 99.8 8.1E-19 2.8E-23 190.5 27.2 214 214-431 136-409 (504)
203 2zy4_A L-aspartate beta-decarb 99.8 2.6E-19 8.8E-24 196.7 23.4 150 227-380 166-338 (546)
204 3dod_A Adenosylmethionine-8-am 99.8 2.7E-19 9.1E-24 191.2 22.2 239 205-464 82-380 (448)
205 4e77_A Glutamate-1-semialdehyd 99.8 3.3E-19 1.1E-23 189.0 22.1 258 207-486 90-399 (429)
206 1wyu_A Glycine dehydrogenase ( 99.8 7.6E-19 2.6E-23 187.2 24.8 279 210-540 108-435 (438)
207 3oks_A 4-aminobutyrate transam 99.8 1.3E-18 4.5E-23 186.3 26.7 291 202-539 96-449 (451)
208 2vyc_A Biodegradative arginine 99.8 3.8E-19 1.3E-23 202.1 23.5 218 204-429 199-466 (755)
209 2qma_A Diaminobutyrate-pyruvat 99.8 3.7E-19 1.3E-23 192.8 21.7 241 201-464 129-433 (497)
210 2jis_A Cysteine sulfinic acid 99.8 2.6E-18 8.8E-23 187.2 28.2 216 212-431 150-424 (515)
211 2cy8_A D-phgat, D-phenylglycin 99.8 8.9E-19 3E-23 187.2 22.7 235 207-464 94-367 (453)
212 2oqx_A Tryptophanase; lyase, p 99.8 3.3E-19 1.1E-23 190.7 19.3 296 208-539 72-440 (467)
213 4ffc_A 4-aminobutyrate aminotr 99.8 2.9E-18 9.9E-23 183.8 26.6 292 201-539 98-447 (453)
214 2cjg_A L-lysine-epsilon aminot 99.8 1.1E-18 3.6E-23 186.9 23.0 281 205-539 96-446 (449)
215 4e1o_A HDC, histidine decarbox 99.8 1.7E-18 5.9E-23 187.1 24.5 255 200-478 106-433 (481)
216 3hmu_A Aminotransferase, class 99.8 2.7E-18 9.4E-23 185.2 26.0 288 202-539 91-450 (472)
217 3k7y_A Aspartate aminotransfer 99.8 2.2E-18 7.7E-23 182.4 24.6 217 201-425 65-333 (405)
218 3k28_A Glutamate-1-semialdehyd 99.8 4.8E-19 1.7E-23 187.9 19.3 286 206-540 89-426 (429)
219 3k40_A Aromatic-L-amino-acid d 99.8 2.2E-18 7.5E-23 186.1 23.6 249 208-478 107-426 (475)
220 2e7u_A Glutamate-1-semialdehyd 99.8 2.7E-18 9.3E-23 181.7 23.8 257 207-486 89-397 (424)
221 3i5t_A Aminotransferase; pyrid 99.8 1.1E-17 3.8E-22 180.6 26.9 293 201-539 87-452 (476)
222 3e77_A Phosphoserine aminotran 99.8 9.6E-19 3.3E-23 183.3 17.6 281 209-540 57-370 (377)
223 3fq8_A Glutamate-1-semialdehyd 99.8 3.9E-18 1.3E-22 180.5 21.9 216 207-426 89-339 (427)
224 3qm2_A Phosphoserine aminotran 99.8 3E-18 1E-22 180.3 17.3 282 205-540 67-380 (386)
225 3m5u_A Phosphoserine aminotran 99.7 5.4E-17 1.8E-21 169.2 20.9 274 209-540 49-355 (361)
226 3n75_A LDC, lysine decarboxyla 99.7 1.1E-16 3.9E-21 179.6 21.5 212 208-428 193-443 (715)
227 2yky_A Beta-transaminase; tran 99.6 4.6E-19 1.6E-23 190.7 0.0 240 206-464 136-398 (465)
228 1ohv_A 4-aminobutyrate aminotr 99.7 2.7E-16 9.3E-21 169.5 19.3 275 211-538 111-464 (472)
229 4h51_A Aspartate aminotransfer 99.7 9.8E-15 3.3E-19 155.1 24.2 221 200-427 79-351 (420)
230 3ou5_A Serine hydroxymethyltra 99.6 2.3E-13 7.9E-18 143.1 24.3 255 201-478 85-391 (490)
231 4ao9_A Beta-phenylalanine amin 99.6 1.6E-13 5.4E-18 146.9 21.8 234 208-463 125-383 (454)
232 4atq_A 4-aminobutyrate transam 99.6 5E-13 1.7E-17 143.4 25.5 286 208-540 105-454 (456)
233 3bc8_A O-phosphoseryl-tRNA(SEC 99.5 1.1E-12 3.7E-17 139.6 25.4 218 205-428 89-338 (450)
234 3hl2_A O-phosphoseryl-tRNA(SEC 99.5 2.9E-13 1E-17 142.9 17.3 203 216-427 123-355 (501)
235 4e3q_A Pyruvate transaminase; 99.5 2.7E-12 9.1E-17 138.2 23.7 236 207-463 108-404 (473)
236 4a0g_A Adenosylmethionine-8-am 99.4 1.4E-12 4.7E-17 149.5 16.4 286 206-540 420-827 (831)
237 3ic5_A Putative saccharopine d 51.9 70 0.0024 25.3 8.6 90 227-330 7-97 (118)
238 3dr5_A Putative O-methyltransf 48.1 1.5E+02 0.0051 27.2 11.3 122 208-335 37-165 (221)
239 2yxb_A Coenzyme B12-dependent 47.1 27 0.00094 30.9 5.6 67 258-326 30-97 (161)
240 2xhz_A KDSD, YRBH, arabinose 5 46.6 1E+02 0.0034 27.0 9.5 41 308-354 105-147 (183)
241 1xrs_B D-lysine 5,6-aminomutas 41.9 1.6E+02 0.0055 28.3 10.5 82 270-354 152-241 (262)
242 3gi1_A LBP, laminin-binding pr 41.4 46 0.0016 32.4 6.7 70 248-331 178-256 (286)
243 3tnl_A Shikimate dehydrogenase 40.2 1.5E+02 0.0052 29.2 10.4 103 226-337 155-266 (315)
244 3sho_A Transcriptional regulat 40.1 75 0.0026 28.0 7.5 110 213-356 27-140 (187)
245 3ruf_A WBGU; rossmann fold, UD 39.5 1.3E+02 0.0043 29.2 9.8 59 242-302 42-106 (351)
246 2yvq_A Carbamoyl-phosphate syn 37.5 46 0.0016 28.9 5.4 87 236-331 37-130 (143)
247 1y80_A Predicted cobalamin bin 37.1 68 0.0023 29.3 6.9 82 251-334 90-179 (210)
248 3c85_A Putative glutathione-re 36.9 63 0.0022 28.4 6.5 88 226-326 40-130 (183)
249 2o1e_A YCDH; alpha-beta protei 36.4 59 0.002 32.1 6.7 69 248-330 189-266 (312)
250 3i6i_A Putative leucoanthocyan 36.1 87 0.003 30.6 8.0 58 271-331 58-116 (346)
251 4h1h_A LMO1638 protein; MCCF-l 35.8 1E+02 0.0035 30.5 8.4 70 245-314 8-96 (327)
252 3tla_A MCCF; serine protease, 35.8 1.1E+02 0.0038 31.0 8.7 70 245-314 39-127 (371)
253 2avd_A Catechol-O-methyltransf 35.8 2.4E+02 0.0082 25.2 11.0 123 209-335 54-181 (229)
254 1m3s_A Hypothetical protein YC 35.7 1.5E+02 0.0051 26.0 8.8 40 308-353 88-129 (186)
255 1tks_A 3,4-dihydroxy-2-butanon 35.5 42 0.0014 31.2 4.9 36 296-331 159-194 (204)
256 3inp_A D-ribulose-phosphate 3- 35.2 79 0.0027 30.2 7.1 81 269-352 129-221 (246)
257 1zco_A 2-dehydro-3-deoxyphosph 35.1 1.9E+02 0.0065 27.6 9.9 68 272-339 128-205 (262)
258 1qop_A Tryptophan synthase alp 34.9 1.1E+02 0.0036 29.3 8.1 87 245-333 118-212 (268)
259 1vhx_A Putative holliday junct 34.2 46 0.0016 29.2 4.9 55 284-338 43-103 (150)
260 4e5s_A MCCFLIKE protein (BA_56 34.1 1.2E+02 0.004 30.2 8.5 70 245-314 8-96 (331)
261 1qyd_A Pinoresinol-lariciresin 33.0 1.4E+02 0.0047 28.3 8.7 55 272-328 54-110 (313)
262 3tr6_A O-methyltransferase; ce 32.9 2.6E+02 0.0091 24.8 10.8 123 208-335 48-176 (225)
263 3sr3_A Microcin immunity prote 32.4 1.3E+02 0.0045 29.9 8.5 70 245-314 9-97 (336)
264 2r6j_A Eugenol synthase 1; phe 31.5 94 0.0032 29.8 7.2 82 243-331 29-112 (318)
265 3vnd_A TSA, tryptophan synthas 31.3 1E+02 0.0035 29.7 7.3 89 242-332 116-212 (267)
266 2zcu_A Uncharacterized oxidore 31.0 1.1E+02 0.0037 28.6 7.4 53 273-327 44-96 (286)
267 1pq4_A Periplasmic binding pro 30.9 96 0.0033 30.1 7.1 70 248-331 189-265 (291)
268 3mfq_A TROA, high-affinity zin 30.8 31 0.0011 33.6 3.4 71 250-331 164-243 (282)
269 3cbg_A O-methyltransferase; cy 30.5 3.1E+02 0.011 24.9 12.2 121 208-335 56-184 (232)
270 3tfw_A Putative O-methyltransf 30.5 3.2E+02 0.011 25.1 11.2 122 209-335 48-172 (248)
271 1iv0_A Hypothetical protein; r 30.4 62 0.0021 26.2 4.7 53 284-336 39-96 (98)
272 4gqr_A Pancreatic alpha-amylas 30.2 26 0.00089 36.2 3.0 85 247-335 7-99 (496)
273 3e48_A Putative nucleoside-dip 29.5 1.1E+02 0.0037 28.8 7.2 55 271-327 42-98 (289)
274 3llv_A Exopolyphosphatase-rela 29.4 1.9E+02 0.0066 23.8 8.1 73 226-305 7-79 (141)
275 3r3h_A O-methyltransferase, SA 28.9 2E+02 0.0067 26.7 8.8 123 209-336 45-173 (242)
276 2xw6_A MGS, methylglyoxal synt 28.5 37 0.0013 29.4 3.1 58 274-332 49-111 (134)
277 1ccw_A Protein (glutamate muta 28.1 61 0.0021 27.7 4.6 75 258-334 15-93 (137)
278 3ujp_A Mn transporter subunit; 27.5 1.1E+02 0.0036 30.2 6.7 68 249-330 190-266 (307)
279 3etn_A Putative phosphosugar i 26.9 2E+02 0.0068 26.3 8.3 54 292-354 104-159 (220)
280 1b93_A Protein (methylglyoxal 26.4 63 0.0021 28.6 4.3 59 273-332 56-119 (152)
281 3dhn_A NAD-dependent epimerase 26.1 2.1E+02 0.0071 25.5 8.2 54 241-302 20-73 (227)
282 2jl1_A Triphenylmethane reduct 25.7 2.9E+02 0.0098 25.6 9.5 92 229-327 3-99 (287)
283 3dm5_A SRP54, signal recogniti 25.6 3.1E+02 0.011 28.4 10.2 125 211-336 75-225 (443)
284 1lss_A TRK system potassium up 25.6 2.6E+02 0.009 22.5 8.7 89 227-326 6-94 (140)
285 3duw_A OMT, O-methyltransferas 25.4 3.6E+02 0.012 23.9 11.5 124 209-336 43-170 (223)
286 3ecs_A Translation initiation 25.4 4E+02 0.014 26.2 10.5 100 226-332 122-229 (315)
287 4df3_A Fibrillarin-like rRNA/T 25.1 80 0.0027 29.8 5.1 125 207-334 54-184 (233)
288 3enk_A UDP-glucose 4-epimerase 24.9 1.4E+02 0.0046 28.8 7.1 75 228-302 7-84 (341)
289 3tsm_A IGPS, indole-3-glycerol 24.9 1.5E+02 0.0053 28.5 7.2 96 251-351 97-193 (272)
290 3qvo_A NMRA family protein; st 24.9 2E+02 0.0067 26.2 7.9 90 228-326 25-116 (236)
291 3c3y_A Pfomt, O-methyltransfer 24.6 4E+02 0.014 24.3 11.1 123 209-335 55-183 (237)
292 1vim_A Hypothetical protein AF 24.4 2.5E+02 0.0085 25.1 8.3 42 308-353 98-139 (200)
293 1sui_A Caffeoyl-COA O-methyltr 24.4 4.2E+02 0.014 24.4 10.2 123 209-335 64-192 (247)
294 1lu0_A CMTI-I, trypsin inhibit 24.1 17 0.00058 22.7 0.1 15 7-29 2-16 (29)
295 1xvl_A Mn transporter, MNTC pr 24.1 1.4E+02 0.0047 29.5 6.9 68 249-330 204-280 (321)
296 1g94_A Alpha-amylase; beta-alp 23.5 38 0.0013 35.1 2.7 64 269-336 23-88 (448)
297 3nav_A Tryptophan synthase alp 23.5 1.6E+02 0.0055 28.4 7.1 86 244-331 120-213 (271)
298 1vmd_A MGS, methylglyoxal synt 23.4 70 0.0024 29.0 4.1 44 287-331 89-134 (178)
299 3fxa_A SIS domain protein; str 23.3 1.2E+02 0.0041 27.1 5.9 41 308-354 101-143 (201)
300 1jeo_A MJ1247, hypothetical pr 23.1 2.6E+02 0.0091 24.1 8.1 40 309-355 92-133 (180)
301 1qyc_A Phenylcoumaran benzylic 23.0 1.3E+02 0.0046 28.3 6.5 53 271-328 54-107 (308)
302 2gas_A Isoflavone reductase; N 22.8 1.2E+02 0.0042 28.6 6.2 52 272-328 54-106 (307)
303 1vb5_A Translation initiation 22.7 3.5E+02 0.012 25.9 9.4 107 217-331 101-216 (276)
304 3bo9_A Putative nitroalkan dio 22.6 3.9E+02 0.013 26.1 10.0 168 173-352 25-203 (326)
305 2i2x_B MTAC, methyltransferase 22.5 82 0.0028 30.0 4.7 83 249-333 123-211 (258)
306 2yva_A DNAA initiator-associat 22.5 3.3E+02 0.011 23.8 8.7 37 289-330 104-140 (196)
307 3dqp_A Oxidoreductase YLBE; al 22.4 1.7E+02 0.0057 26.2 6.8 77 241-326 16-97 (219)
308 3c1o_A Eugenol synthase; pheny 22.2 1.6E+02 0.0055 28.1 6.9 55 272-331 55-110 (321)
309 3ovp_A Ribulose-phosphate 3-ep 22.0 1.9E+02 0.0065 26.9 7.1 81 269-352 107-195 (228)
310 3io5_A Recombination and repai 21.9 3.5E+02 0.012 26.9 9.3 80 248-331 57-167 (333)
311 4af0_A Inosine-5'-monophosphat 21.8 1.6E+02 0.0055 31.5 7.1 117 243-362 287-419 (556)
312 2g1u_A Hypothetical protein TM 21.8 3.6E+02 0.012 22.6 9.9 95 225-332 19-117 (155)
313 3cx3_A Lipoprotein; zinc-bindi 21.7 71 0.0024 30.9 4.2 69 248-330 176-253 (284)
314 1mct_I Trypsin inhibitor A; co 21.7 18 0.00063 22.3 -0.1 15 7-29 2-16 (28)
315 3bh4_A Alpha-amylase; calcium, 21.5 52 0.0018 34.3 3.3 30 306-335 72-101 (483)
316 3kts_A Glycerol uptake operon 21.3 1E+02 0.0035 28.2 4.9 82 283-383 17-100 (192)
317 3khj_A Inosine-5-monophosphate 21.2 4.4E+02 0.015 26.3 10.1 86 266-352 137-234 (361)
318 3tha_A Tryptophan synthase alp 21.0 3.1E+02 0.011 26.0 8.4 87 243-331 110-204 (252)
319 3hh8_A Metal ABC transporter s 20.8 97 0.0033 30.2 4.9 67 250-330 184-259 (294)
320 1g57_A DHBP synthase, 3,4-dihy 20.8 97 0.0033 29.0 4.6 34 297-331 168-201 (217)
321 1req_A Methylmalonyl-COA mutas 20.7 1.3E+02 0.0045 33.3 6.4 82 250-333 597-685 (727)
322 1ud2_A Amylase, alpha-amylase; 20.3 56 0.0019 34.0 3.3 29 308-336 76-104 (480)
323 1wpc_A Glucan 1,4-alpha-maltoh 20.3 56 0.0019 34.1 3.3 28 308-335 78-105 (485)
324 1mxg_A Alpha amylase; hyperthe 20.2 57 0.002 33.6 3.3 29 308-336 82-110 (435)
325 1hvx_A Alpha-amylase; hydrolas 20.1 57 0.0019 34.4 3.3 31 306-336 75-105 (515)
No 1
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=100.00 E-value=1.1e-65 Score=550.12 Aligned_cols=385 Identities=32% Similarity=0.486 Sum_probs=308.4
Q ss_pred CCCccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEE
Q 009172 150 LSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTV 229 (541)
Q Consensus 150 ~~~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i 229 (541)
|.+++|+++|+|...+ ..+++++||||+|+||.|++.+++.+.+.+...+|.|+|+++|+.++||++||+++|.+.++
T Consensus 24 m~~~~t~~~h~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~v 101 (430)
T 3ri6_A 24 MRGFTTRALHVPKAKR--DVHGALRTPVYDNAAFEFENSDEIAQVSLGRALGHVYSRSSNPTVEDLEQRLKNLTGALGVL 101 (430)
T ss_dssp -CCHHHHHHCCC----------------------------------------------CCHHHHHHHHHHHHHHTCSEEE
T ss_pred cCCcchhheeCCCCCC--CCCCCcCCCcccccccccCCHHHHHHHhhcccCCccccCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 3358999999997653 35889999999999999999988777776667789999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCC
Q 009172 230 IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPF 309 (541)
Q Consensus 230 ~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPt 309 (541)
+++||++|+.+++++++++||+|+++++.|+++...+...++..|+++++++..|+++|++++++ +|++|++|+|+||+
T Consensus 102 ~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-~t~~v~~e~p~Npt 180 (430)
T 3ri6_A 102 ALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-TTKLLFLETISNPQ 180 (430)
T ss_dssp EESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred EECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCC
Confidence 99999999999999999999999999999999988776677888999999999999999999987 59999999999999
Q ss_pred CcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEe--ChHH-----------
Q 009172 310 LRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG--SGKL----------- 376 (541)
Q Consensus 310 G~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~--~~~l----------- 376 (541)
|.+.|+++|+++|+++|++||+|++|+.+..+++...|+|++++|+||+++|++++++|+++. +..+
T Consensus 181 G~~~dl~~i~~la~~~g~~livD~a~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~ 260 (430)
T 3ri6_A 181 LQVADLEALSKVVHAKGIPLVVDTTMTPPYLLEAKRLGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYA 260 (430)
T ss_dssp CCCCCHHHHHHHHHTTTCCEEEECTTSCTTTCCGGGGTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHH
T ss_pred CeecCHHHHHHHHHHcCCEEEEECCCcccccCChHHcCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhh
Confidence 999999999999999999999999999988889999999999999999999999999999994 3222
Q ss_pred -------HHHHHH-HhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHh
Q 009172 377 -------VTQIRN-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIAT 448 (541)
Q Consensus 377 -------i~~l~~-~~~~~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~ 448 (541)
+++++. .....|..++++.+|+++++++++..|++++.+|+++++++|+++|.|.+|.||+|+++|+|++++
T Consensus 261 ~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~ 340 (430)
T 3ri6_A 261 KAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLGLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAK 340 (430)
T ss_dssp HHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHH
T ss_pred hhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHH
Confidence 233332 334678889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCccc-EEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCH
Q 009172 449 QQMTGFGG-VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF 527 (541)
Q Consensus 449 ~~~~g~g~-~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~ 527 (541)
+|+ |+|+ |++|+++ +.+.+.+|+++++++++++|+|+.+|++++|++++|..++++++++.|+.+++||||||+|++
T Consensus 341 ~~~-g~Gg~~lsf~l~-~~~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG~E~~ 418 (430)
T 3ri6_A 341 RQF-RYAGSILTFELE-SKEASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVGIEEI 418 (430)
T ss_dssp HHC-SSCCSEEEEECS-SHHHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECCSSCH
T ss_pred HhC-CCCceEEEEEEC-CHHHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeccCCH
Confidence 999 9999 9999998 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009172 528 EDLKADVLQALH 539 (541)
Q Consensus 528 edli~dL~~AL~ 539 (541)
+|+++||++||+
T Consensus 419 ~dl~~dl~~al~ 430 (430)
T 3ri6_A 419 EDLKEDILQALC 430 (430)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhC
Confidence 999999999984
No 2
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=100.00 E-value=1.4e-63 Score=535.79 Aligned_cols=396 Identities=87% Similarity=1.321 Sum_probs=366.1
Q ss_pred hhhccCCCccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhC
Q 009172 145 NEASFLSSDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG 224 (541)
Q Consensus 145 ~~~~~~~~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g 224 (541)
++++|++..+|+++|+|...+....++++.+|||+|+||.|++.+++...+.++.++|.|+|+++|+.+++|++||+++|
T Consensus 49 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~Pi~~t~t~~~~~~~~~~~~~~~~~~~~~y~r~~~~~~~~l~~~lA~l~g 128 (445)
T 1qgn_A 49 KYASFLNSDGSVAIHAGERLGRGIVTDAITTPVVNTSAYFFNKTSELIDFKEKRRASFEYGRYGNPTTVVLEEKISALEG 128 (445)
T ss_dssp CCCTTCCSHHHHHHHTTTTTCCSSCCSBSSCCBCCCSBBCBSSHHHHHHHHTTSSCCCCBGGGCCHHHHHHHHHHHHHHT
T ss_pred cccccCCCcccEEEecCCCCCcCCCCCCcCCCcccCCceecCCHHHHHhhhccccCCccccCCCChHHHHHHHHHHHHhC
Confidence 55666655499999999865311357999999999999999999888777777777899999999999999999999999
Q ss_pred CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCe-eEEEEe
Q 009172 225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNV-SLFFTE 303 (541)
Q Consensus 225 ~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~t-klV~le 303 (541)
+++.++++||++|+.+++++++++||+||++.+.|++++.++...++..|+++++++..|+++|+++++++ | ++|++|
T Consensus 129 ~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~ai~~~-tv~lV~le 207 (445)
T 1qgn_A 129 AESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELALNQK-KVNLFFTE 207 (445)
T ss_dssp CSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHHHHHS-CEEEEEEE
T ss_pred CCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhccC-CCCEEEEe
Confidence 99999999999999999999999999999999999998887766678889999999999999999999874 8 999999
Q ss_pred CCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH
Q 009172 304 SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL 383 (541)
Q Consensus 304 sp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~ 383 (541)
+|+||+|.+.|+++|.++|+++|+++|+|++|+.++.+.++.+|+|++++|+||+++|++++++|+++++++++++++..
T Consensus 208 ~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~ 287 (445)
T 1qgn_A 208 SPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNL 287 (445)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHH
Confidence 99999999999999999999999999999999988777888889999999999999999988899999999999998887
Q ss_pred hhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009172 384 HHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD 463 (541)
Q Consensus 384 ~~~~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~ 463 (541)
...+|+.++++.+|+++++++++..|++++.+++++++++|+++|.+.+++||+++++|+|+++++++++.|++++|+++
T Consensus 288 ~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~ 367 (445)
T 1qgn_A 288 HHILGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVD 367 (445)
T ss_dssp HHHHCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEES
T ss_pred HHHhCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEEC
Confidence 77788889999999999999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 464 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 464 g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
++.+.+.+|+++|+++++++|+|+.+|++++|+.++|..++.+.+.++|+++++||||+|+|++++++++|+++|+++
T Consensus 368 ~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG~Edid~li~~L~~al~~~ 445 (445)
T 1qgn_A 368 GDLLTTAKFVDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGVEDFDDLKADILQALDSI 445 (445)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCSSCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHhCCCceEeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 765678899999999999999999999999999999999999999999999999999999999999999999999875
No 3
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2e-63 Score=530.20 Aligned_cols=384 Identities=34% Similarity=0.548 Sum_probs=360.5
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|...+ .++++.||||+|++|.|++.+++.+.+.++..+|.|+||++|+.++|+++|++++|.++++++
T Consensus 26 ~~~t~~~~~~~~~~---~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~ 102 (414)
T 3ndn_A 26 SQATVGVRGGMLRS---GFEETAEAMYLTSGYVYGSAAVAEKSFAGELDHYVYSRYGNPTVSVFEERLRLIEGAPAAFAT 102 (414)
T ss_dssp CHHHHHHHTTCCCC---TTCBSSCCBCCCSBBCCSSHHHHHHHHTTSSCCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCCCC---CCCCcCCCcccCCceecCChHHHHHHHhCCcCCcCcCCCCChHHHHHHHHHHHHHCCCcEEEE
Confidence 58999999997642 478999999999999999999888877777788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++++++++||+|+++++.|+++...+...++..|+++++++..|+++|++++++ +|++|++|+|+||+|.
T Consensus 103 ~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~-~t~~v~le~p~NptG~ 181 (414)
T 3ndn_A 103 ASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGDDLSQWERALSV-PTQAVFFETPSNPMQS 181 (414)
T ss_dssp SSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHTSS-CCSEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999999888776667778999999999999999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHH-HHHHHhhhcCCC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVLGGA 390 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~l~~~~~~~g~~ 390 (541)
+.|+++|+++|+++|++||+|++|+.+....++..|+|++++|+||+++++|++++|+++++++.+. .++.....+|..
T Consensus 182 ~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~~g~~ 261 (414)
T 3ndn_A 182 LVDIAAVTELAHAAGAKVVLDNVFATPLLQQGFPLGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPA 261 (414)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTHHHHCCCGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHHHCCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhcCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999877777888999999999999999999888999999988776 677667778888
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----H
Q 009172 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----L 466 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~----~ 466 (541)
+++..+++++++++++..|++++.+++++++++|+++|.+.++.||+++++|+|++++++++|+|+|++|+++++ .
T Consensus 262 ~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~ 341 (414)
T 3ndn_A 262 MSAFNAWVLLKGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAK 341 (414)
T ss_dssp CCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876 6
Q ss_pred HHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 467 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 467 ~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+.+.+|+++++++++++|+|+.+|++++|++++|..++++++.++|+.+++||||+|+|+++|+++||++||+
T Consensus 342 ~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~e~~~dli~dl~~al~ 414 (414)
T 3ndn_A 342 QRAFEVLDKMRLIDISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGLEDTDDLIADIDRALS 414 (414)
T ss_dssp HHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCccceEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHhhC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999984
No 4
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=100.00 E-value=1e-62 Score=522.44 Aligned_cols=376 Identities=39% Similarity=0.668 Sum_probs=349.9
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|...+ ..+|+++||||++++|.|++.+ ...+|.|+|+++|+.++|+++|++++|.++++++
T Consensus 19 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~s~~~~~~~~--------~~~~~~y~r~~~p~~~~l~~~la~l~g~~~~~~~ 88 (400)
T 3nmy_A 19 SLATLAIHGGQSPD--PSTGAVMPPIYATSTYAQSSPG--------EHQGFEYSRTHNPTRFAYERCVAALEGGTRAFAF 88 (400)
T ss_dssp CHHHHHHHTTCCCC--TTTCBSSCCBCCCSBBBCSBTT--------BSSSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcchheeeCCCCCC--CCCCCcCCCccccceeeccCcc--------ccCCcccccCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 47999999998653 3589999999999999998753 3468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhh-cccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCC
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETV-LPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~-l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG 310 (541)
+||++|+.+ +..++++||+|+++++.|++++..+... ++..|+++.+++..|++++++++++ ++++|++|+|+||+|
T Consensus 89 ~sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~e~~~np~G 166 (400)
T 3nmy_A 89 ASGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA-DTKMVWIETPTNPML 166 (400)
T ss_dssp SSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred cCHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEEEECCCCHHHHHHHhcc-CCCEEEEECCCCCCC
Confidence 999999988 5778999999999999999988877666 7778999999999999999999987 599999999999999
Q ss_pred cccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEE-EEE-eChHHHHHHHHHhhhcC
Q 009172 311 RCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-SIS-GSGKLVTQIRNLHHVLG 388 (541)
Q Consensus 311 ~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG-~vv-~~~~li~~l~~~~~~~g 388 (541)
.+.|+++|+++|+++|+++|+|++|++++.+.++.+|+|++++|+||+++|+++.++| +++ .+++++++++.....+|
T Consensus 167 ~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~~~~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g 246 (400)
T 3nmy_A 167 KLVDIAAIAVIARKHGLLTVVDNTFASPMLQRPLSLGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIG 246 (400)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHC
T ss_pred eeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988777888899999999999999999988899 555 46788888888888889
Q ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009172 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 468 (541)
Q Consensus 389 ~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~ 468 (541)
..++++.+|+++++++++..|++++.+++++++++|+++|.|.+|.||+++++|+|++++++++|.|+|++|+++++.+.
T Consensus 247 ~~~~~~~a~~~l~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~ 326 (400)
T 3nmy_A 247 GVQGPFDSFLALRGLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDA 326 (400)
T ss_dssp CBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875677
Q ss_pred HHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 469 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 469 ~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+.+|+++++++++++|+|+.+|++++|+.++|..++++.+.++|+++++||||+|+|+++|+++||++||+
T Consensus 327 ~~~~~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 327 AKRFCEKTELFTLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp HHHHHHHCSSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcceEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999985
No 5
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=100.00 E-value=4.2e-61 Score=512.38 Aligned_cols=383 Identities=27% Similarity=0.454 Sum_probs=349.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcc-cCCCCCCCCCchhHHHHHHHHHHHhCCCcEEE
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKR-RASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~-~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~ 230 (541)
+++|+++|+|...+ ..+++++||||+|+||.|++.+++.+.+.+. .++|.|+|+++|+.++||++||+++|++++++
T Consensus 25 ~~~t~~~~~~~~~~--~~~~~~~~pi~~s~t~~~~~~~~~~~~~~~~~~~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~ 102 (415)
T 2fq6_A 25 KLDTQLVNAGRSKK--YTLGAVNSVIQRASSLVFDSVEAKKHATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVL 102 (415)
T ss_dssp CHHHHHHHTTCCHH--HHTTBSSCCBCCCSCBCCSSHHHHHHHHHTTTTTSCCCTTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCEeCCeecccceeeCCHHHHHHhhccccCCCccccCCCCchHHHHHHHHHHHhCCCeEEE
Confidence 58899999997642 3478999999999999999998887776555 56799999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCC
Q 009172 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (541)
Q Consensus 231 ~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG 310 (541)
++||++|+++++.+++++||+||++.++|++++..+...++..|+++++++.+|+++|++++++ +||+|++|+|+||+|
T Consensus 103 ~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~d~~~le~ai~~-~tklV~~e~~~NptG 181 (415)
T 2fq6_A 103 FPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQP-NTKIVFLESPGSITM 181 (415)
T ss_dssp ESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECTTCGGGGGGGCCT-TEEEEEEESSCTTTC
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEECCCCHHHHHHhhcc-CCcEEEEECCCCCCC
Confidence 9999999999999999999999999999999988887777888999999999999999999987 599999999999999
Q ss_pred cccCHHHHHHHHHh--CCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcC
Q 009172 311 RCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG 388 (541)
Q Consensus 311 ~v~di~~Ia~la~~--~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g 388 (541)
.++|+++|+++|++ +|+++|+|++|+.++...++.+|+|++++|+||+++|++++++|+++++++++++++......|
T Consensus 182 ~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G 261 (415)
T 2fq6_A 182 EVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMG 261 (415)
T ss_dssp CCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTT
T ss_pred EeecHHHHHHHHHhhcCCCEEEEECCCcccccCCccccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcC
Confidence 99999999999999 9999999999998877788889999999999999999998889999999888888887777778
Q ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--H
Q 009172 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--L 466 (541)
Q Consensus 389 ~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~--~ 466 (541)
..+++..+++++++++++..|++++.+|+..++++|+++|.+.++.||+++++|+|+++++++.+.|++++|+++++ .
T Consensus 262 ~~~~~~~a~~~~~~l~~l~~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~ 341 (415)
T 2fq6_A 262 QMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNN 341 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCH
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCH
Confidence 88899999999999999999999999999999999999999999999999999999999999988999999999873 6
Q ss_pred HHHHHHHHHcCCCceeecCCCcccceec--CcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 467 TATIKFIDALKIPYIAPSFGGCESIVDQ--PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 467 ~~~~~~l~~L~~~~iavS~G~~~sl~~~--pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
+.+.+|++.++++++++|+|+++|++.+ |+.++|... .+++|+.+++||||+|+|+++|+|++|.++|+++
T Consensus 342 ~~~~~~l~~l~~~~~a~s~G~~~s~~~~~~p~~~s~~~~----~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~~ 414 (415)
T 2fq6_A 342 EELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIRP----QGEIDFSGTLIRLHIGLEDVDDLIADLDAGFARI 414 (415)
T ss_dssp HHHHHHHTTCSSCEECSCCCSSSCEEEEECHHHHHTTCT----TCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcCeEeccCCCCceeEEecCCCccccccc----hhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999998 877766321 0246788899999999999999999999999863
No 6
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=100.00 E-value=1.5e-58 Score=488.56 Aligned_cols=375 Identities=37% Similarity=0.585 Sum_probs=348.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|..++ ..++++.+|||++++|.|++.+ +...+|.|+|+++|+.++||++||+++|.++++++
T Consensus 17 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~y~r~~~~~~~~l~~~la~~~g~~~~~~~ 87 (392)
T 3qhx_A 17 GLATRAIHSGYRPD--PATGAVNAPIYASSTFAQDGVG-------GLRGGYEYARTGNPTRTALEAALAAVEDAAFGRAF 87 (392)
T ss_dssp CHHHHHHHSSCCCC--TTTCBSSCCBCCCSBBCCSSTT-------CCBTTBCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CcchhheeCCCCCC--CCCCCccCCcccCcceEecCcc-------cccCCccccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 47999999997653 4588999999999999998753 23458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++.+++++||+|+++.++|+++...+...++..|+++.+++.+|++++++++++ ++++|++++|+||+|.
T Consensus 88 ~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 166 (392)
T 3qhx_A 88 SSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVALADLDAVRAAIRP-TTRLIWVETPTNPLLS 166 (392)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCCCCHHHHHHhhCC-CCeEEEEECCCCCCcE
Confidence 999999999999999999999999999999888877777888999999999999999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcCCC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGGA 390 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g~~ 390 (541)
+.|+++|.++|+++|+++|+|++|+.++..++...|+|++++|+||++++++++++|+++++ +++.+.++.....+|..
T Consensus 167 ~~~l~~i~~la~~~g~~li~D~~~~~~~~~~~~~~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 246 (392)
T 3qhx_A 167 IADIAGIAQLGADSSAKVLVDNTFASPALQQPLSLGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAV 246 (392)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCC
T ss_pred EecHHHHHHHHHHcCCEEEEECCCcccccCChHHhCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999998888888899999999999999999998889999987 58888888887778889
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009172 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 470 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~ 470 (541)
.+++.+++++++++++..+++++.+++++++++|+++|.+..+.||+++++|+|++++++++|.|+|++|+++++.+..+
T Consensus 247 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~ 326 (392)
T 3qhx_A 247 PGPFDAYLTMRGLKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAE 326 (392)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHH
T ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987667889
Q ss_pred HHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 471 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 471 ~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+|++.++++++++|+|+.++++++|..++|..++.+ .+|+.+++||||+|+|+++|++++|.++|+
T Consensus 327 ~~~~~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~---~~g~~~~~iRlSvg~e~~~~~i~~l~~al~ 392 (392)
T 3qhx_A 327 QLCAKTNIFILAESLGSVESLIEHPSAMTHASTAGS---QLEVPDDLVRLSVGIEDVADLLDDLKQALG 392 (392)
T ss_dssp HHHHHCSSSEECSCCCCSSCEEECGGGTSCGGGBTT---BCCCCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred HHHHhCCCceECCCCCCCCceeeCcccccccccCHH---HcCCCCCeEEEEeccCCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999888765 788999999999999999999999999984
No 7
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=100.00 E-value=3e-57 Score=477.84 Aligned_cols=384 Identities=34% Similarity=0.560 Sum_probs=355.3
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+| .. ..++++.||||+++||.|++.+++.+.+.+...+|.|+|+++|...+||++||+++|.++++++
T Consensus 5 ~~~t~~~~~~-~~---~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~i~~ 80 (389)
T 3acz_A 5 DITTTLLHPK-GD---HVLHSHAYPIFQTSTFCFDSTQQGADLFMGKGEGHIYSRLGNPTVEQFEEMVCSIEGAAGSAAF 80 (389)
T ss_dssp CHHHHHHSCS-SC---CSTTBSSCCBCCCSBBCCSSHHHHHHHHTTCSSCCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecC-CC---CCCCCCCCCcccCCceecCChHHHHHhhcCCCCCcccCCCCChHHHHHHHHHHHHhCCCeEEEe
Confidence 4789999999 32 3479999999999999999998888877666678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++.+++++||+|+++.+.|+++...+...++..|+++++++..|++++++++++ ++++|++|+|+||+|.
T Consensus 81 ~sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 159 (389)
T 3acz_A 81 GSGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKP-NTKMVYLESPANPTCK 159 (389)
T ss_dssp SSHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTCHHHHHHTCCT-TEEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCCe
Confidence 999999999999999999999999999999887776667778999999999999999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 390 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g~~ 390 (541)
+.|+++|.++|+++|+++|+|++|+.++...++..++|++++|+||+++++++.++|++++++ +++++++.....+|..
T Consensus 160 ~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~~~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~g~~ 239 (389)
T 3acz_A 160 VSDIKGIAVVCHERGARLVVDATFTSPCFLKPLELGADIALHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDAGSL 239 (389)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHCCC
T ss_pred ecCHHHHHHHHHHcCCEEEEECCCccccccCccccCCeEEEECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999988766778889999999999999999987789999998 8999888877667888
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009172 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 470 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~ 470 (541)
.++..+++++++++++..|++++.++++.++++|++++.+.++.+|+|+++|+++++++++++.|++++|++++ .+...
T Consensus 240 ~~~~~~~~~~~~l~~l~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~-~~~~~ 318 (389)
T 3acz_A 240 MAPMDAFLCARGMKTLPIRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS-FEAAK 318 (389)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-HHHHH
T ss_pred CCHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC-HHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999988999999999986 67788
Q ss_pred HHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 471 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 471 ~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
++++.++++..++|+|+.+|++++|+.++|..++++++...|+++++||||+|.|++++++++|.++|+++
T Consensus 319 ~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~~~~~li~~l~~al~~~ 389 (389)
T 3acz_A 319 KLMEHLKVCTLAVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIENVDDIIADLKQALELW 389 (389)
T ss_dssp HHHTTCSSSEEBSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCcEECcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864
No 8
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=100.00 E-value=1.1e-56 Score=476.35 Aligned_cols=377 Identities=36% Similarity=0.609 Sum_probs=336.7
Q ss_pred CccccccccCCcCCCCCCC-CcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEE
Q 009172 152 SDGSLAIHAGERLGRGIVT-DAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVI 230 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~-~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~ 230 (541)
+++|+++|+|...+ ..+ +++.+|||+++||.+++..+ ..+|.|+||++|+..+||++||+++|.++.++
T Consensus 18 ~~~t~~~h~g~~~~--~~~~~~~~~pi~~stt~~~~~~~~--------~~~~~y~r~~~p~~~~l~~~la~~~g~~~~i~ 87 (403)
T 3cog_A 18 HFATQAIHVGQDPE--QWTSRAVVPPISLSTTFKQGAPGQ--------HSGFEYSRSGNPTRNCLEKAVAALDGAKYCLA 87 (403)
T ss_dssp THHHHHHHTTCCGG--GSTTCBSSCCBCCCSCBCCC----------------------CHHHHHHHHHHHHHHTCSEEEE
T ss_pred CcccEEEeCCCCCC--cCCCCCccCCeeccceeecCCccc--------cCCCcccCCCCchHHHHHHHHHHHhCCCcEEE
Confidence 47899999997643 246 89999999999999987532 13588999999999999999999999989999
Q ss_pred eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCC
Q 009172 231 MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFL 310 (541)
Q Consensus 231 ~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG 310 (541)
++||++|+.+++. ++++||+|+++++.|++++..+...++..|+++++++..|++++++++++ +|++|++++|+||+|
T Consensus 88 ~~sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~t~~v~~~~p~nptG 165 (403)
T 3cog_A 88 FASGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCSKIKLLEAAITP-ETKLVWIETPTNPTQ 165 (403)
T ss_dssp ESCHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSCTTTC
T ss_pred ECCHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCc-CCeEEEEECCCCCCC
Confidence 9999999999999 89999999999999999887776667888999999998899999999987 599999999999999
Q ss_pred cccCHHHHHHHHHhCC-CEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcC
Q 009172 311 RCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG 388 (541)
Q Consensus 311 ~v~di~~Ia~la~~~g-illvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g 388 (541)
.+.|+++|+++|+++| +++|+|++|+.+....++.+|+|++++|+||+++|++++++|+++++ ++++++++.....+|
T Consensus 166 ~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g 245 (403)
T 3cog_A 166 KVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPLALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG 245 (403)
T ss_dssp CCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTTTTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_pred eeeCHHHHHHHHHHcCCCEEEEECCCcccccCCccccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC
Confidence 9999999999999999 99999999998876677788999999999999999998778999985 788888888777788
Q ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009172 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 468 (541)
Q Consensus 389 ~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~ 468 (541)
...+++.+++++++++++..|++++.+|+..++++|++++.|+++.+|+|+++|+++++++++++.|++++|.+++..+.
T Consensus 246 ~~~~~~~~~~~~~~l~~l~~r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~~~ 325 (403)
T 3cog_A 246 AVPSPIDCYLCNRGLKTLHVRMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTLQH 325 (403)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999989999999999866577
Q ss_pred HHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 469 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 469 ~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+|+++++++.+++|+|+.+|++++|+.++|..++.+.+..+|+++++||||+|+|+++++|++|.++|++
T Consensus 326 ~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~ 397 (403)
T 3cog_A 326 AEIFLKNLKLFTLAESLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKA 397 (403)
T ss_dssp HHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcceEccCCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999999999975
No 9
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=100.00 E-value=4.1e-55 Score=466.56 Aligned_cols=384 Identities=31% Similarity=0.456 Sum_probs=343.3
Q ss_pred ccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEeC
Q 009172 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (541)
Q Consensus 153 ~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~s 232 (541)
++|+++|+|...+ ..++++.+|||+|++|.|++.++....+.++..+|.|+|+.+|..+++|++|++++|.+..++++
T Consensus 3 ~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~ 80 (421)
T 2ctz_A 3 FETLQLHAGYEPE--PTTLSRQVPIYPTTSYVFKSPEHAANLFALKEFGNIYSRIMNPTVDVLEKRLAALEGGKAALATA 80 (421)
T ss_dssp HHHHHHHTTCCCC--TTTCBSSCCBCCCSCBCCSCHHHHHHHHTTTTGGGSCBTTBCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cceeeeeCCCCCC--cCCCCccCCeeccceeeeCCHHHHHHhhccccCCCcccCCCChHHHHHHHHHHHHhCCCceEEec
Confidence 6799999997653 34799999999999999999988777666666789999999999999999999999998899999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe-CCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI-DPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 233 SG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v-d~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
||++|+.+++.+++++||+|+++.++|+++...+...++..|+++.++ +.+|++++++++++ +|++|++++|+||+|.
T Consensus 81 sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~n~~G~ 159 (421)
T 2ctz_A 81 SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-KTRAWWVESIGNPALN 159 (421)
T ss_dssp SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHhhcc-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999998877655567789999999 98899999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCC-CCCCcccccccCCcEEEECCccccCCCCCceEEEEEeC--hHH----HHHHH---
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTF-ATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS--GKL----VTQIR--- 381 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~-a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~--~~l----i~~l~--- 381 (541)
+.|+++|.++|+++|+++|+|+++ +.++..+++..++|++++|+||+++++++.+||+++.+ .++ .+.+.
T Consensus 160 ~~~l~~i~~~a~~~g~~livD~~~~~~g~~~~~~~~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~ 239 (421)
T 2ctz_A 160 IPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQ 239 (421)
T ss_dssp CCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCcccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhcccc
Confidence 999999999999999999999999 77766677788999999999999999887778888873 222 11221
Q ss_pred ----------------------H-HhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCC
Q 009172 382 ----------------------N-LHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGL 438 (541)
Q Consensus 382 ----------------------~-~~~~~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl 438 (541)
. ....+|..+++..+|+++++++++..|++++.++++++.++|+++|.|..+.||++
T Consensus 240 ~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~ 319 (421)
T 2ctz_A 240 PGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGL 319 (421)
T ss_dssp GGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTS
T ss_pred chhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCC
Confidence 0 12346778899999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHhhhc-CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCe
Q 009172 439 KSHPEHHIATQQM-TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNL 517 (541)
Q Consensus 439 ~s~p~~~l~~~~~-~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~ 517 (541)
+++|+|+++++++ ++.|+|++|++++..+.+.+|+++++++++++++|+.++++++|+.++|..++++++..+|+++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~ 399 (421)
T 2ctz_A 320 PHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEM 399 (421)
T ss_dssp TTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTE
T ss_pred CCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCe
Confidence 9999999999999 789999999998644678899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCHHHHHHHHHHHHh
Q 009172 518 VRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 518 IRlSvG~Ed~edli~dL~~AL~ 539 (541)
||+|+|+|++++++++|+++|+
T Consensus 400 vRlS~g~e~~~~li~~l~~al~ 421 (421)
T 2ctz_A 400 VRLSVGLEHVEDLKAELKEALA 421 (421)
T ss_dssp EEEECCSSCHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999974
No 10
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=100.00 E-value=1.6e-54 Score=458.04 Aligned_cols=376 Identities=35% Similarity=0.589 Sum_probs=340.2
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|...+ .++++.||||+++||.|++.+ ...+.|.|+|+++|..++||++||+++|.++.+++
T Consensus 7 ~~~t~~~~~~~~~~---~~~~~~~pi~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~lr~~la~~~g~~~~i~~ 76 (393)
T 1n8p_A 7 KFATKAIHAGEHVD---VHGSVIEPISLSTTFKQSSPA-------NPIGTYEYSRSQNPNRENLERAVAALENAQYGLAF 76 (393)
T ss_dssp CHHHHHHHTTCCCC---SSCCSSCCBCCCSBCCBSSSS-------SBSSSCCBTTTCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEecCCCcc---CCCCcCCCcccccceeecccc-------ccccCcceecCCChhHHHHHHHHHHHhCCCcEEEE
Confidence 47899999997642 479999999999999997642 12257999999999999999999999999899999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+++++. ++++||+|+++.++|++++..+...++..|+++++++.+| +++++++++ +|++|++++|+||+|.
T Consensus 77 ~sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d-~~l~~~i~~-~t~lv~~~~~~nptG~ 153 (393)
T 1n8p_A 77 SSGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDLL-NDLPQLIKE-NTKLVWIETPTNPTLK 153 (393)
T ss_dssp SCHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSHH-HHHHHHSCS-SEEEEEECSSCTTTCC
T ss_pred CChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCCh-HHHHHhccc-CceEEEEECCCCCcce
Confidence 999999999999 9999999999999999887776656788899999998878 999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhC----CCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhh
Q 009172 312 CVDVKLVSDLCHKK----GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHV 386 (541)
Q Consensus 312 v~di~~Ia~la~~~----gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~ 386 (541)
++|+++|.++|+++ |+++|+|++|+.+...++..+|+|++++|+||+++++|++++|+++++ +++++.++.....
T Consensus 154 ~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~~~~~~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~ 233 (393)
T 1n8p_A 154 VTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA 233 (393)
T ss_dssp CCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCCHHHcCCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999 999999999987655567778999999999999999998888999985 7888888877776
Q ss_pred cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC-ceEEeCCCCCCCchhhhHhhhcCC-c-ccEEEEEEc
Q 009172 387 LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK-VKRVHYPGLKSHPEHHIATQQMTG-F-GGVVSFEVD 463 (541)
Q Consensus 387 ~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~-v~~V~~Pgl~s~p~~~l~~~~~~g-~-g~~vsf~l~ 463 (541)
+|...++..++++.++++++..++++..+++..+.++|++++. +.++.+|+++++|+++++.+++++ . |++++|+++
T Consensus 234 ~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~ 313 (393)
T 1n8p_A 234 IGAIPSPFDAWLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIK 313 (393)
T ss_dssp HCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEES
T ss_pred cCCCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeC
Confidence 7888889999988889999999999999999999999999988 888999999999999999998877 7 999999998
Q ss_pred CCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 464 GDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 464 g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
+.......|++.++++++++|+|++++++.+|+..+|..++.+.+.++|++++.||||+|.|+++++|++|.++|++
T Consensus 314 ~~~~~~~~~l~~l~~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~ 390 (393)
T 1n8p_A 314 GGAEAASKFASSTRLFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp SCHHHHHHHHHHCSSSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCCcceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 66567899999999999999999999999999999999888888999999999999999999999999999999985
No 11
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=100.00 E-value=5.9e-54 Score=453.55 Aligned_cols=386 Identities=38% Similarity=0.576 Sum_probs=319.0
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|...+ ..++++.+|+|+++||.++..++....+.++...|.|+|+++|..+++|++|++++|.++.+++
T Consensus 9 ~~~t~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~la~~~g~~~~i~~ 86 (398)
T 1gc0_A 9 GFATRAIHHGYDPQ--DHGGALVPPVYQTATFTFPTVEYGAACFAGEQAGHFYSRISNPTLNLLEARMASLEGGEAGLAL 86 (398)
T ss_dssp CHHHHHHHTTCCGG--GGTTBSSCCBCCCSCBCCC---------------------CCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcCceeEeCCCCCC--CCCCCcCCCccCCCccccCCHHHHHHhhcCCcCCCcccCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 57899999997642 3478999999999999999877665555556678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++.+++++||+|+++.+.|+++...+...+...|+++.+++..|++++++++++ ++++|++++|+||+|.
T Consensus 87 ~sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 165 (398)
T 1gc0_A 87 ASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADLQALEAAMTP-ATRVIYFESPANPNMH 165 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCeEEEEECCCCCCcc
Confidence 999999999999999999999999999999887776556778999999999999999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHH-HHHHHhhh-cCC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHV-LGG 389 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~l~~~~~~-~g~ 389 (541)
+.|+++|.++|+++|+++|+|++|+.+....++..++|+++.|+||+++++++.++|++++++++++ .++..... +|+
T Consensus 166 ~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~ 245 (398)
T 1gc0_A 166 MADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGA 245 (398)
T ss_dssp CCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCC
T ss_pred cccHHHHHHHHHHcCCEEEEECCCcccccCCchhhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999998776556677899999999999999998777899999988765 56655555 677
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009172 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 469 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~ 469 (541)
..++..++++.++++++..++++..++++.+.++|++++.+.++.||+++++|+++++.+++++.|++++|++++..+..
T Consensus 246 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 325 (398)
T 1gc0_A 246 VLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAG 325 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999988889999999998644668
Q ss_pred HHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 470 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 470 ~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++++++++.++++|+|+.++++++|..++|..++.+.+..+|++++.||||+|.|++++++++|.++|++
T Consensus 326 ~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~ 396 (398)
T 1gc0_A 326 RRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396 (398)
T ss_dssp HHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999975
No 12
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=100.00 E-value=5.4e-52 Score=440.17 Aligned_cols=385 Identities=34% Similarity=0.576 Sum_probs=347.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|+++|+|.. + ..++++.+|+|+++++.++...+..+.+.+..+.|.|+|.++|..++|+++|++++|.++++++
T Consensus 7 ~~~t~~~~~~~~-~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~l~~~ia~~~g~~~~i~~ 83 (404)
T 1e5e_A 7 TPATACIHANPQ-K--DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGNPTVSNLEGKIAFLEKTEACVAT 83 (404)
T ss_dssp CHHHHHHHSSCC-C--CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CccceeeecCCC-C--CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcChHHHHHHHHHHHHhCCCcEEEe
Confidence 378999999875 2 2468999999999999999987766655556678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
++|++|+.+++.+++++||+|+++++.|+++...+...++..|+++++++..|++++++++++ +|++|++++|+||||.
T Consensus 84 ~~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~t~~v~l~~p~NptG~ 162 (404)
T 1e5e_A 84 SSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTAIPGEVKKHMKP-NTKIVYFETPANPTLK 162 (404)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHHCCT-TEEEEEEESSCTTTCC
T ss_pred CChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCCCHHHHHHhcCC-CCcEEEEECCCCCCCc
Confidence 999999999999999999999999999999887665566778999999998899999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHh-CCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHH-HHHHHhhhc-C
Q 009172 312 CVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-G 388 (541)
Q Consensus 312 v~di~~Ia~la~~-~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~l~~~~~~~-g 388 (541)
+.|+++|.++|++ +|+++|+|++|+.+....++.+|+|+++.|+||+++++++.++|++++++++++ +++.....+ |
T Consensus 163 v~~l~~i~~la~~~~~~~li~De~~~~~~~~~~~~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g 242 (404)
T 1e5e_A 163 IIDMERVCKDAHSQEGVLVIADNTFCSPMITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITG 242 (404)
T ss_dssp CCCHHHHHHHHHTSTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCC
T ss_pred ccCHHHHHHHHHhhcCCEEEEECCCchhhhCCccccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhCCC
Confidence 9999999999999 999999999999876656777899999999999999998766799999998887 777766555 7
Q ss_pred CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH
Q 009172 389 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA 468 (541)
Q Consensus 389 ~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~ 468 (541)
...+++.++++.++++++..+++++.++++.+.++|++++.+.++.+|+|+++|+++++.+++++.|+++.|++++..+.
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~ 322 (404)
T 1e5e_A 243 SVISPHDAWLITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEG 322 (404)
T ss_dssp CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHH
T ss_pred CCCCHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCCHHH
Confidence 77889999999999999999999999999999999999999999999999999999999999889999999999754356
Q ss_pred HHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 469 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 469 ~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+++++++++..++++|+.+|++++|+.++|..++.+++...|+++++||||+|.|+.++++++|+++|++
T Consensus 323 ~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~e~~~~li~~l~~al~~ 394 (404)
T 1e5e_A 323 AKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGIEDADELIADFKQGLDA 394 (404)
T ss_dssp HHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 778999999888999999999999999999999999999999999889999999999999999999999874
No 13
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=100.00 E-value=2.6e-51 Score=435.42 Aligned_cols=381 Identities=33% Similarity=0.507 Sum_probs=341.1
Q ss_pred ccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEeC
Q 009172 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (541)
Q Consensus 153 ~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~s 232 (541)
++|+++|+|...+ .+++++||||++++|.|++.+++.+... ...+|.|+|+.++..+++|+++++++|.+++++++
T Consensus 3 ~~t~~~~~~~~~~---~~~~~~~pi~~s~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~ 78 (412)
T 2cb1_A 3 YTTLAVLAGLPED---PHGAVGLPIYAVAAYGFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGALEAVVLA 78 (412)
T ss_dssp HHHHHHHTTCCCC---TTCCSSCCCCCCSBCCCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred ccceeeecCCCcC---CCCCcCCCccccceeecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCCcEEEEC
Confidence 6799999997642 4789999999999999999988777655 45679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcc
Q 009172 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (541)
Q Consensus 233 SG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v 312 (541)
||++|+.+++.+++++||+|+++.++|++++..+...++..|+++.+++.+ +++|++++++ ++++|++++|+||+|.+
T Consensus 79 ~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~l~~~i~~-~~~~v~~~~~~n~~G~~ 156 (412)
T 2cb1_A 79 SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDPE-PEAVREALSA-KTRAVFVETVANPALLV 156 (412)
T ss_dssp SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTCEEEEECSS-HHHHHHHCCT-TEEEEEEESSCTTTCCC
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-HHHHHHHhcc-CCeEEEEeCCCCCCccc
Confidence 999999999999999999999999999988877665577789999999864 9999999987 59999999999999999
Q ss_pred cCHHHHHHHHHhCCCEEEEEcCCCCC-CcccccccCCcEEEECCccccCCCCCceEEEEEeCh-----------------
Q 009172 313 VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG----------------- 374 (541)
Q Consensus 313 ~di~~Ia~la~~~gillvvDea~a~~-~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~----------------- 374 (541)
.|+++|.++|+++|+++|+|++|+.+ +...+...++|+++.|+||+++++++.+||+++.++
T Consensus 157 ~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 236 (412)
T 2cb1_A 157 PDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVESLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKG 236 (412)
T ss_dssp CCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC----
T ss_pred ccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEECCcccccCCCCcEEEEEEeccccccccccccccccccc
Confidence 99999999999999999999999887 666777789999999999999998877788888763
Q ss_pred ----------HHHHHHHHHh-hhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCch
Q 009172 375 ----------KLVTQIRNLH-HVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPE 443 (541)
Q Consensus 375 ----------~li~~l~~~~-~~~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~ 443 (541)
++.+.++... ...|..+++..++++..+++.+..++++..++++++.++|.+++.+..+++|++.++|+
T Consensus 237 ~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~ 316 (412)
T 2cb1_A 237 QIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGLETVALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPA 316 (412)
T ss_dssp ---HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTT
T ss_pred cchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCCchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcc
Confidence 4455555543 44566778999999889999999999999999999999999999998899999999999
Q ss_pred hhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEec
Q 009172 444 HHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG 523 (541)
Q Consensus 444 ~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG 523 (541)
|+++++++++.|++++|++ ++.+...+++++++++. +.|+|+.++++++|+..+|..++++++.++|+.++.||+|+|
T Consensus 317 ~~~~~~~~~~~~~iv~~~~-~~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g 394 (412)
T 2cb1_A 317 HRNARKYLASGGPILTLDL-GDLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVG 394 (412)
T ss_dssp HHHHHHHCSSSCSEEEEEC-SSHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECC
T ss_pred HHHHHHhCCCCceEEEEEe-CCHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEec
Confidence 9999999999999999999 67778889999999888 999999999999999999998999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhC
Q 009172 524 VEDFEDLKADVLQALHAI 541 (541)
Q Consensus 524 ~Ed~edli~dL~~AL~~i 541 (541)
.+++++++++|.++|+++
T Consensus 395 ~~~~~~~i~~l~~al~~~ 412 (412)
T 2cb1_A 395 LEDPLDLLALFEEALEAV 412 (412)
T ss_dssp SSCHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999999863
No 14
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=100.00 E-value=5.1e-49 Score=415.26 Aligned_cols=386 Identities=37% Similarity=0.637 Sum_probs=341.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
++.|+++|+|...+ ..++++..|++.++++.++...+....+.+....|.|+|++++..+++++++++++|.++.+++
T Consensus 8 ~~~t~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~i~~ 85 (398)
T 2rfv_A 8 GFNTQIVHAGQQPD--PSTGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGEAGLAT 85 (398)
T ss_dssp CHHHHHHHTTCCCC--TTTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CCceeEeecCCcCc--cCCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46899999997642 3468899999999999999887665544455678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++.+++++||+|+++.+.|+++...+...++..|+++++++..|++++++++++ ++++|++++|+||||.
T Consensus 86 ~sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 164 (398)
T 2rfv_A 86 ASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRP-ETKVVYIETPANPTLS 164 (398)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-TEEEEEEESSBTTTTB
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhcCC-CCeEEEEECCCCCCCc
Confidence 999999999999999999999999999999877665555778999999999999999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHH-HHHHHhhhc-CC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRNLHHVL-GG 389 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~l~~~~~~~-g~ 389 (541)
+.|+++|.++|+++|+++|+|++|+.+....+...++|+++.|+||++++++..++|++++++++++ .++.....+ |.
T Consensus 165 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 244 (398)
T 2rfv_A 165 LVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGG 244 (398)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCC
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCchhhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999998876666777899999999999999888666799999998887 666666566 77
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009172 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 469 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~ 469 (541)
..++..++++.++++.+..++++..++++.+.++|++++.+.++.+|+|+++|++++..+++++.|++++|++++..+..
T Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~ 324 (398)
T 2rfv_A 245 CMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAG 324 (398)
T ss_dssp CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHH
T ss_pred CCCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCHHHH
Confidence 78888888888899988889999999999999999999999999999999999999998887888999999997544567
Q ss_pred HHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 470 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 470 ~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++++.++..++++++|+.++++++|...+|..++.+.+...|+.++.||||+|.+++++++++|.++|++
T Consensus 325 ~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~ 395 (398)
T 2rfv_A 325 RRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK 395 (398)
T ss_dssp HHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHh
Confidence 88999998889999999999999999888898888888889999899999999999999999999999975
No 15
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=100.00 E-value=2.1e-47 Score=401.13 Aligned_cols=378 Identities=33% Similarity=0.552 Sum_probs=330.6
Q ss_pred CccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEe
Q 009172 152 SDGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIM 231 (541)
Q Consensus 152 ~~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~ 231 (541)
+++|.++|.|...+ ..++++.||||++++|.|++.+ ....|.|+||++|...+|+++|++++|.++.+++
T Consensus 4 ~~~t~~~~~~~~~~--~~~~~~~~pi~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~ 73 (386)
T 1cs1_A 4 KQATIAVRSGLNDD--EQYGCVVPPIHLSSTYNFTGFN--------EPRAHDYSRRGNPTRDVVQRALAELEGGAGAVLT 73 (386)
T ss_dssp CHHHHHHHTTTTCC--TTTCBSSCCBCCCSBBCCSBTT--------BCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred CcceeEEecCCCcc--ccCCCCCCCccccceeeccccC--------CCCCcceeCCCCccHHHHHHHHHHHhCCCcEEEe
Confidence 36799999997542 3479999999999999987632 2357999999999999999999999999889999
Q ss_pred CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc
Q 009172 232 ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR 311 (541)
Q Consensus 232 sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~ 311 (541)
+||++|+.+++.+++++||+|+++.++|++++..+...++..|+++.+++..|++++++++++ ++++|++++|+||+|.
T Consensus 74 ~sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~ 152 (386)
T 1cs1_A 74 NTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAE-KPKLVLVESPSNPLLR 152 (386)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTTCHHHHHHHHHT-CCSEEEEECSCTTTCC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhcc-CCcEEEEeCCCCCCCc
Confidence 999999999999999999999999999999877665556778999999998899999999987 5999999999999999
Q ss_pred ccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcCCC
Q 009172 312 CVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGA 390 (541)
Q Consensus 312 v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g~~ 390 (541)
+.|+++|.++|+++|+++|+|++|..+....+...++|+++.|+||++++++.+++|++++++ ++++.++.....++..
T Consensus 153 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~ 232 (386)
T 1cs1_A 153 VVDIAKICHLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVT 232 (386)
T ss_dssp CCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCB
T ss_pred ccCHHHHHHHHHHcCCEEEEECCCcccccCCccccCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999877655566789999999999999988866679999886 7888888776666777
Q ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHH
Q 009172 391 LNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATI 470 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~ 470 (541)
.++..++.+.++++.+..++++..++++.+.++|++++.+..+.+|++.++|+++++.++.++.|++++|++++..+...
T Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (386)
T 1cs1_A 233 GGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLR 312 (386)
T ss_dssp CCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCCHHHHH
Confidence 78888888888888888888999999999999999999998999999999999999988888899999999986545555
Q ss_pred HHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 471 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 471 ~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
++++..+++..+.++|+.++++++|..+.|...+.+.+..+|+.++.||||++.+++++++++|.++|++
T Consensus 313 ~~l~~~gi~~~~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~ 382 (386)
T 1cs1_A 313 RFLGGLSLFTLAESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_dssp HHHHTCSSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcceEcccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHH
Confidence 6666555544445589999999999988888888888888999889999999999999999999999875
No 16
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=100.00 E-value=4.8e-47 Score=409.55 Aligned_cols=375 Identities=33% Similarity=0.584 Sum_probs=330.6
Q ss_pred ccccccccCCcCCCCCCCCcccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhCCCcEEEeC
Q 009172 153 DGSLAIHAGERLGRGIVTDAITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEGAESTVIMA 232 (541)
Q Consensus 153 ~~t~~~~~g~~~~~~~~~~~~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~s 232 (541)
+.|.++|.+...+ ..+++.+||++++++.++... ..+.|.|+|+++|..+++++++++++|.+++++++
T Consensus 87 ~~~~~i~l~~g~~---~~~~~~~~i~~a~~~~~~~~~--------~~~~~~Y~~~g~~~~~~l~~~la~~~g~~~~i~~~ 155 (464)
T 1ibj_A 87 VSTLLVNLDNKFD---PFDAMSTPLYQTATFKQPSAI--------ENGPYDYTRSGNPTRDALESLLAKLDKADRAFCFT 155 (464)
T ss_dssp HHHHHTCCCCSSC---TTCCSSCCCCCCSBCCCSSSS--------CCCSCSBTTTCCHHHHHHHHHHHHHHTCSEEEEES
T ss_pred cCCeEEECCCCCC---CCCCCCccHHhhhhhhhhccc--------ccCCccccCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 6788888875311 257899999999998765431 23568899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcc
Q 009172 233 SGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC 312 (541)
Q Consensus 233 SG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v 312 (541)
+|++|+.+++. ++++||+|+++++.|+++...+....+..|+++++++..|+++|++++++ ++++|++++|+||+|.+
T Consensus 156 sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~d~~~l~~~i~~-~tk~v~l~~p~NptG~v 233 (464)
T 1ibj_A 156 SGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGP-QTKLVWLESPTNPRQQI 233 (464)
T ss_dssp SHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTTSHHHHHHHCCS-SEEEEEECSSCTTTCCC
T ss_pred CHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHhcc-CceEEEEeCCCCCCCEe
Confidence 99999988875 88999999999999999877665667778999999999899999999987 59999999999999999
Q ss_pred cCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcCCCc
Q 009172 313 VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGAL 391 (541)
Q Consensus 313 ~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g~~~ 391 (541)
.|+++|+++|+++|+++|+|++|..+....+..+|+|++++|+||++++++++++|++++++ ++++.++......|...
T Consensus 234 ~~l~~i~~la~~~gi~livDea~~~g~~~~~~~~~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~~g~~~ 313 (464)
T 1ibj_A 234 SDIRKISEMAHAQGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGL 313 (464)
T ss_dssp CCHHHHHHHHHTTTCEEEEECTTTCTTTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBC
T ss_pred ecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCEEEEECCcccccCCCCCcEEEEEEChHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999887666677789999999999999998777789999985 78888887776677778
Q ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHH
Q 009172 392 NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIK 471 (541)
Q Consensus 392 s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~ 471 (541)
+++.+++++++++++..|+++..+++..++++|++++.+.++.+++|..+|+++++.++.++.|++++|+++ +.+....
T Consensus 314 ~~~~~~a~~~al~~~~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~-~~~~~~~ 392 (464)
T 1ibj_A 314 APFDCWLCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITG-SVALSKH 392 (464)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECS-CHHHHHH
T ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEEC-CHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999998888888999999996 4445667
Q ss_pred HHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 472 FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 472 ~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
|++.|+..++++++|+.++++++|+.++|..++.+.+...|+.+++||||+|.|+.++++++|+++|+++
T Consensus 393 ~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 393 LVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGIEDVDDLISDLDIAFKTF 462 (464)
T ss_dssp HHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCSSCHHHHHHHHHHHHHSC
T ss_pred HHHhcCcceEeecCCCCceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888877777777778888899999999999999999999999753
No 17
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=100.00 E-value=8.4e-41 Score=342.48 Aligned_cols=326 Identities=37% Similarity=0.592 Sum_probs=288.5
Q ss_pred HHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhcc
Q 009172 214 VVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALN 293 (541)
Q Consensus 214 ~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~ 293 (541)
+||++||+++|.++.++++||++|+.+++.+++++||+|+++.++|+++...+...++..|+++.+++..|+++++++++
T Consensus 2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~i~ 81 (331)
T 1pff_A 2 ALEGKIAKLEHAEACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMAVPGNIEKHLK 81 (331)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTTSTTHHHHTCC
T ss_pred hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCCCCHHHHHHhhc
Confidence 68999999999999999999999999999999999999999999999987666544566799999999889999999998
Q ss_pred CCCeeEEEEeCCCCCCCcccCHHHHHHHHHh-CCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCceEEEEEe
Q 009172 294 NNNVSLFFTESPTNPFLRCVDVKLVSDLCHK-KGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISG 372 (541)
Q Consensus 294 ~~~tklV~lesp~NPtG~v~di~~Ia~la~~-~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~ 372 (541)
+ ++++|++++|+||||.+.|+++|.++|++ +|+++|+|++|+.+....+...++|+++.|+||++++++..++|++++
T Consensus 82 ~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~d~~~~s~~K~~~~~~~r~~G~~~~ 160 (331)
T 1pff_A 82 P-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPLDLGVDIVVHSATKYINGHTDVVAGLVCS 160 (331)
T ss_dssp T-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGGGGTCSEEEEETTTTTSSSSSCCCEEEEE
T ss_pred C-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChhhcCCcEEEEECccccCCCCCceEEEEEe
Confidence 7 59999999999999999999999999999 999999999998765444557789999999999999887655799999
Q ss_pred Ch-HHHHHHHHHhhh-cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhh
Q 009172 373 SG-KLVTQIRNLHHV-LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQ 450 (541)
Q Consensus 373 ~~-~li~~l~~~~~~-~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~ 450 (541)
++ +++++++..... .+...++..++.+.++++.+..++++..++...+.++|++++.+..+.++++.+.|+++++.++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~ 240 (331)
T 1pff_A 161 RADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQ 240 (331)
T ss_dssp CHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhh
Confidence 98 888888876665 5667888888888888998888899999999999999999988888999999999999988887
Q ss_pred cCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHH
Q 009172 451 MTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDL 530 (541)
Q Consensus 451 ~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edl 530 (541)
.++.|++++|.++ +.+...++++..+++..++|+|+.++++++|+...|..++.+.+..+|++++.||||+|.++++++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~ 319 (331)
T 1pff_A 241 MKMFGSMIAFDVD-GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDI 319 (331)
T ss_dssp CSSCCSEEEEECS-SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHH
T ss_pred CCCCceEEEEEEC-CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHH
Confidence 7788999999997 456677777777666668899999999999988888888888888999988999999999999999
Q ss_pred HHHHHHHHhhC
Q 009172 531 KADVLQALHAI 541 (541)
Q Consensus 531 i~dL~~AL~~i 541 (541)
++++.++|+++
T Consensus 320 i~~l~~~l~~~ 330 (331)
T 1pff_A 320 IDDLKQALDLV 330 (331)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999863
No 18
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=100.00 E-value=7.3e-35 Score=310.80 Aligned_cols=324 Identities=19% Similarity=0.246 Sum_probs=259.7
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHH-------H
Q 009172 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFI-------E 267 (541)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~---~sSG~~Ai~~al~all~~GD~VIv~~-~~y~~~~~~~-------~ 267 (541)
..+|.|+|. ..++||+++|+++|++.+++ ++||++|+.+++.++++|||+|++++ +.|+++..++ .
T Consensus 65 ~~gy~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 141 (427)
T 3i16_A 65 SSGYGYGDI---GRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNM 141 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSS
T ss_pred CCCCCCCHH---HHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchH
Confidence 346667665 58999999999999998888 89999999999999999999999999 9999987665 1
Q ss_pred hhcccCCcEEEEeCC-----CCHHHHHHhcc--CCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEEcC
Q 009172 268 TVLPKMGITATVIDP-----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGT 334 (541)
Q Consensus 268 ~~l~~~Gi~v~~vd~-----~dle~Le~ai~--~~~tklV~les----p~NPtG~v~di~~Ia~la~~--~gillvvDea 334 (541)
..++..|+++++++. .|+++++++++ + +||+|++++ |+||+|.+.|+++|+++|++ +|+++++|++
T Consensus 142 ~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~-~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a 220 (427)
T 3i16_A 142 GSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDE-SITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNC 220 (427)
T ss_dssp CCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCT-TEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred HHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCC-CCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456677999999987 58999999998 5 599999999 99999999999999999999 9999999999
Q ss_pred CCCCC-cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh--hhcCCCccH-HH-HHHHHHhHHHHHHH
Q 009172 335 FATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNP-NA-AYLIIRGMKTLHLR 409 (541)
Q Consensus 335 ~a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~--~~~g~~~s~-~~-a~l~l~~l~tl~~r 409 (541)
|+.+. ...+...|+|++++|+||+++|+++..+|+++++++++++++... ...|..+++ +. +++++++++++..|
T Consensus 221 ~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~l~gl~~~~~r 300 (427)
T 3i16_A 221 YGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSMYQGLFLAPHI 300 (427)
T ss_dssp TTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHH
T ss_pred CccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHHHHHHHHHHHH
Confidence 99887 678888999999999999999999888999999999999988733 334444444 44 78899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC---
Q 009172 410 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG--- 486 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G--- 486 (541)
++++.+++..++++|++++. +| +|+ +++|+|++ +++|.+. +.+.+.+|+++|+.+....|+-
T Consensus 301 ~~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~~----------i~~i~l~-~~~~~~~f~~~l~~~~~~~s~~~p~ 365 (427)
T 3i16_A 301 SMEALKGAILCSRIMELAGF--EV-MPK-YDEKRSDI----------IQSIKFN-DKDKLIEFCKGIQTGSPIDSFVSCE 365 (427)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CEEEECS-SHHHHHHHHHHHHHTCSSSTTSCCC
T ss_pred HHHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCccE----------EEEEEEC-CHHHHHHHHHHHhhcCcccccccCc
Confidence 99999999999999999986 67 888 78887765 8999996 5688999999998876554432
Q ss_pred -----CcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 487 -----GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 487 -----~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
|++.-+...+.+--..-+.|.-.+..+.+.++...-|-.+.+...-.+.+|++++
T Consensus 366 ~~~~~gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
T 3i16_A 366 PWDMPGYTDQVIMAAGAFIQGSSIELSADAPIREPYIAYLQGGLTFDHAKIGILIALSRI 425 (427)
T ss_dssp CBCC---CCCEEEEECCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCceeeccCcCCCCccccccCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHHH
Confidence 2222111111000000011111222355678888888888888888888888764
No 19
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=3.3e-34 Score=305.71 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=258.4
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH-------
Q 009172 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------- 267 (541)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~---~sSG~~Ai~~al~all~~GD~VIv~~-~~y~~~~~~~~------- 267 (541)
..+|.|+|+ ..++||+++|+++|++.+++ ++||++|+.+++.++++|||+|++++ +.|+++..++.
T Consensus 66 ~~gy~Y~~~---g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 66 SSGYGYNDI---GRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred CcCCCCCch---hHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhh
Confidence 356777765 58999999999999998888 89999999999999999999999999 99998876551
Q ss_pred hhcccCCcEEEEeCC----CCHHHHHHhcc--CCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEEcCC
Q 009172 268 TVLPKMGITATVIDP----ADMEGLEAALN--NNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTF 335 (541)
Q Consensus 268 ~~l~~~Gi~v~~vd~----~dle~Le~ai~--~~~tklV~les----p~NPtG~v~di~~Ia~la~~--~gillvvDea~ 335 (541)
..++..|+++++++. .|+++++++++ + +||+|++++ |+||+|.+.|+++|.++|++ +|+++++|++|
T Consensus 143 ~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~~-~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~ 221 (427)
T 3hvy_A 143 GSLREYGVKYKMVDLKDGKVDINTVKEELKKDD-SIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCY 221 (427)
T ss_dssp CCTGGGTCEEEECCCBTTBCCHHHHHHHHHHCT-TEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred hHHHHcCCEEEEecCCCCCcCHHHHHHHhhCCC-CCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence 446678999999987 79999999998 5 599999999 99999999999999999999 89999999999
Q ss_pred CCCC-cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh--hcCCCcc--HHHHHHHHHhHHHHHHHH
Q 009172 336 ATPL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALN--PNAAYLIIRGMKTLHLRV 410 (541)
Q Consensus 336 a~~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~--~~g~~~s--~~~a~l~l~~l~tl~~r~ 410 (541)
+.+. ..++...|+|++++|+||+++|+++.+||+++++++++++++.... ..|...+ ...+++++++++++..|+
T Consensus 222 ~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~~~r~ 301 (427)
T 3hvy_A 222 GEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMAPHVT 301 (427)
T ss_dssp CTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHHHHHH
Confidence 9887 6788889999999999999999988889999999999999887432 2332222 233788899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeec------
Q 009172 411 QQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPS------ 484 (541)
Q Consensus 411 ~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS------ 484 (541)
+++.+|+..++++|++++. +| +|+ +++|+|++ +++|.+. +.+.+.+|+++|+.+....|
T Consensus 302 ~~~~~~a~~la~~L~~~g~--~V-~p~-~~~~~~~l----------i~~~~l~-~~~~~~~f~~~l~~~~~~~s~~~p~~ 366 (427)
T 3hvy_A 302 IEAVKGAVFCARIMELAGF--DV-LPK-YNDKRTDI----------IQAIKFN-DEKKLIDFIKGIQTASPVDSFVQCEA 366 (427)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------EEEEECS-SHHHHHHHHHHHHHTCSSSTTCCC--
T ss_pred HHHHHHHHHHHHHHHhCCC--ee-cCC-CCCCCceE----------EEEEeCC-CHHHHHHHHHHhccccccccccCCCC
Confidence 9999999999999999976 56 787 77777654 8999996 56888999999987654433
Q ss_pred --CCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 485 --FGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 485 --~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
+.|+++.+...+.+-=..-+.|.-.+..+.+.++...-|-.+.+...-.+.+|++++
T Consensus 367 ~~~~Gy~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (427)
T 3hvy_A 367 WDMPGYEDKVIMAAGTFVQGASIELSADAPIREPYIGYLQGGLTFDHAKLGVLIALSKL 425 (427)
T ss_dssp --------CEEEECCCSSTTCSSSSEEEEESCTTCEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CCCCCCcCceeeeccccCCCccccccCCCCCCCCeeEEEcCCccHHHHHHHHHHHHHHh
Confidence 344444433222110001111111223456778999999889898888899988764
No 20
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=100.00 E-value=9.5e-34 Score=300.82 Aligned_cols=320 Identities=17% Similarity=0.189 Sum_probs=254.7
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH------h
Q 009172 199 RASFEYGRYGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------T 268 (541)
Q Consensus 199 ~~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~---~sSG~~Ai~~al~all~~GD~VIv~~-~~y~~~~~~~~------~ 268 (541)
..+|.|+|. ..++||+++|+++|.+.+++ ++||++|+.+++.+++++||+|++++ +.|.++...+. .
T Consensus 51 ~~~~~y~~~---~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~ 127 (409)
T 3jzl_A 51 STGYGYDDE---GRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQG 127 (409)
T ss_dssp CCTTCTTCH---HHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSS
T ss_pred CcCCCCChh---HHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhh
Confidence 456666654 58999999999999998888 89999999999999999999999998 99998776552 3
Q ss_pred hcccCCcEEEEeCC-----CCHHHHHHhccCCCeeEEEEeC----CCCCCCcccCHHHHHHHHHh--CCCEEEEEcCCCC
Q 009172 269 VLPKMGITATVIDP-----ADMEGLEAALNNNNVSLFFTES----PTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFAT 337 (541)
Q Consensus 269 ~l~~~Gi~v~~vd~-----~dle~Le~ai~~~~tklV~les----p~NPtG~v~di~~Ia~la~~--~gillvvDea~a~ 337 (541)
.++..|+++++++. .|++++++++++ +||+|++++ |+||+|.+.|+++|.++|++ +|+++++|++|+.
T Consensus 128 ~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~ 206 (409)
T 3jzl_A 128 SLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE 206 (409)
T ss_dssp CTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred HHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence 56778999999987 689999999987 599999999 99999999999999999999 9999999999998
Q ss_pred CC-cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhh------cCCCccHHHHHHHHHhHHHHHHHH
Q 009172 338 PL-NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV------LGGALNPNAAYLIIRGMKTLHLRV 410 (541)
Q Consensus 338 ~~-~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~------~g~~~s~~~a~l~l~~l~tl~~r~ 410 (541)
++ ..++...|+|++++|+||+++|+++.+||+++++++++++++..... .|..+. .+++++++++++..|+
T Consensus 207 ~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~--~~~~~l~gl~~~~~r~ 284 (409)
T 3jzl_A 207 FVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLY--SLLEMYQGFFLAPHVT 284 (409)
T ss_dssp TTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTT--CHHHHHHHHHHHHHHH
T ss_pred ccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHH--HHHHHHHHHhhHHHHH
Confidence 76 56788899999999999999999888899999999999998864322 222222 2456789999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC-----
Q 009172 411 QQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF----- 485 (541)
Q Consensus 411 ~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~----- 485 (541)
+++.+++..++++|++++. ++ +|+ +++|+|++ +++|.++ +.+.+.+|+++|+.+....|+
T Consensus 285 ~~~~~~a~~la~~L~~~g~--~v-~p~-~~~~~~~~----------i~~i~l~-~~~~~~~~~~~L~~~~~~~s~~~p~~ 349 (409)
T 3jzl_A 285 AQAIKGARFTAAMLAEFGV--EA-DPV-WDAPRTDL----------IQSVSFH-NKEKMVAFAQAIQAASPVNAHVLPIG 349 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTC--EE-ESC-TTSCCSSS----------CCEEECS-CHHHHHHHHHHHHHTSSSSTTSCCCC
T ss_pred HHHHHHHHHHHHHHHhCCC--cc-cCC-CCCCCccE----------EEEEEeC-CHHHHHHHHHHHHhcCcccccCCCCC
Confidence 9999999999999999976 56 787 77777654 8899996 568889999999877644332
Q ss_pred ---CCcccceecCccccc-ccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 486 ---GGCESIVDQPAIMSY-WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 486 ---G~~~sl~~~pa~~~~-~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.|++.-+...+.+ + ..-+.|.-.+..+.+.++...-|-.+.+...-.+.+|+++
T Consensus 350 ~~~~gy~~~~~~~~~~-f~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (409)
T 3jzl_A 350 AYMPGYEDDVIMAAGT-FIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQK 407 (409)
T ss_dssp BCCTTCSSCEEEECCC-SSTTCSSSCEEEEESSTTTEEEEECCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceeEeccc-cCCCcceeecCCCCCCCCeEEEEcCCccHHHHHHHHHHHHHh
Confidence 2333322211111 1 0001111122335567888888988888888888888875
No 21
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.96 E-value=4.6e-27 Score=245.05 Aligned_cols=284 Identities=11% Similarity=0.101 Sum_probs=213.9
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~L 288 (541)
.+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+.+... +...|.++..++..|+++|
T Consensus 83 ~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~d~~~l 158 (384)
T 1bs0_A 83 SVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEA----ASLSPSQLRRFAHNDVTHL 158 (384)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHTSSSEEEEECTTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHH----HHHcCCCEEEeCCCCHHHH
Confidence 478899999999999998899999999999999999999999999999999976643 3446899999998899999
Q ss_pred HHhccCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-------cccccCCcEEEECCcccc
Q 009172 289 EAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------KALSLGADLVLHSATKFI 359 (541)
Q Consensus 289 e~ai~~~--~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~-------~~l~~gaDivv~S~sK~l 359 (541)
++++++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... .....+.|+++.|+||++
T Consensus 159 ~~~l~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~ 238 (384)
T 1bs0_A 159 ARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF 238 (384)
T ss_dssp HHHHHSCCSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT
T ss_pred HHHHHhcCCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh
Confidence 9998753 3799999999999999999999999999999999999998765321 112245899999999999
Q ss_pred CCCCCceEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHhCCCceE
Q 009172 360 GGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAEILEAHPKVKR 432 (541)
Q Consensus 360 gg~g~v~gG~vv~~~~li~~l~~~~~~--~g~~~s~~~a~l~l~~l~tl-----~~r~~~~~~na~~la~~L~~~p~v~~ 432 (541)
++. ||++++++++++.++..... .+...++..++.+...++.+ ....++..++++++.+.|++++ +.
T Consensus 239 ~~~----GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~- 312 (384)
T 1bs0_A 239 GVS----GAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-FT- 312 (384)
T ss_dssp SSC----CEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-CE-
T ss_pred hcc----CcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcC-Cc-
Confidence 854 49999999998888764322 23345666665555555443 3455666778888888888752 32
Q ss_pred EeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcC
Q 009172 433 VHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYG 512 (541)
Q Consensus 433 V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~g 512 (541)
+. | +.|+++++.++. .....++.+.|...++.+..|..... .
T Consensus 313 ~~-~----------------~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~--------------------~ 354 (384)
T 1bs0_A 313 LA-D----------------SCSAIQPLIVGD-NSRALQLAEKLRQQGCWVTAIRPPTV--------------------P 354 (384)
T ss_dssp EC-S----------------CCSSBCCEEEES-HHHHHHHHHHHHHTTEECCEECTTSS--------------------C
T ss_pred cc-C----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCcEEEeecCCCC--------------------C
Confidence 21 2 146688888863 23456677776655776665432110 0
Q ss_pred CCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 513 IMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 513 i~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..++.+||+++...+++.++.+.++|.+
T Consensus 355 ~~~~~~Ri~~~~~~~~~~i~~~~~~l~~ 382 (384)
T 1bs0_A 355 AGTARLRLTLTAAHEMQDIDRLLEVLHG 382 (384)
T ss_dssp TTCEEECCBCCTTCCHHHHHHHHHHHHH
T ss_pred CCCceEEEEEcCCCCHHHHHHHHHHHHh
Confidence 1247899999987667777777777764
No 22
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.96 E-value=1.9e-27 Score=249.82 Aligned_cols=305 Identities=15% Similarity=0.151 Sum_probs=215.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~al----l~~GD~VIv~~~~y~~~~~~~~~~l~~~G 274 (541)
+.|+....+...+++++|++++|. ++++++++|++|+.+++.++ +++||+|+++.++|+++...+.......|
T Consensus 64 ~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g 143 (420)
T 1t3i_A 64 HQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTG 143 (420)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcC
Confidence 344433356788999999999998 57888888999999999999 89999999999999997544444555668
Q ss_pred cEEEEeCC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCC
Q 009172 275 ITATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA 348 (541)
Q Consensus 275 i~v~~vd~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~ga 348 (541)
+++++++. .|+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. .+....+.
T Consensus 144 ~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~ 222 (420)
T 1t3i_A 144 AVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDC 222 (420)
T ss_dssp CEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTC
T ss_pred cEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCC
Confidence 88888875 479999999987 599999999999999999999999999999999999999886543 24445689
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhh--------------------cCCCccHHHHHHHHH-hHHH--
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--------------------LGGALNPNAAYLIIR-GMKT-- 405 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~--------------------~g~~~s~~~a~l~l~-~l~t-- 405 (541)
|+++.|+||.+++.| +|+++++++++++++..... +....++..+++++. .++.
T Consensus 223 di~~~s~sK~~~~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 299 (420)
T 1t3i_A 223 DWLVASGHKMCAPTG---IGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLT 299 (420)
T ss_dssp SEEEEEGGGTTSCTT---CEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEehhhhcCCCc---eEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHH
Confidence 999999999888766 68999999888876543211 111122233333222 3333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009172 406 ---LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA 482 (541)
Q Consensus 406 ---l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ia 482 (541)
+....++..++++.+.+.|++.+++. +..|.. +. .+.|++++|.+++ .....+.+.|...++.
T Consensus 300 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~---~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~ 365 (420)
T 1t3i_A 300 DLGMENIHNYEVELTHYLWQGLGQIPQLR-LYGPNP---KH--------GDRAALASFNVAG--LHASDVATMVDQDGIA 365 (420)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHTCTTEE-EESCCG---GG--------SCBCSEEEEEETT--BCHHHHHHHHHTTTEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCeE-EeCCCc---cc--------cccCCEEEEEECC--CCHHHHHHHHHHCCeE
Confidence 34455666788889999998877654 333320 00 0247899999874 1234566666666877
Q ss_pred ecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 483 PSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 483 vS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+..|..+.. | .....|. ++.||||++...+++.++.+.++|+
T Consensus 366 v~~~~~~~~---~-----------~~~~~g~-~~~iRis~~~~~~~~~i~~~~~~l~ 407 (420)
T 1t3i_A 366 IRSGHHCTQ---P-----------LHRLFDA-SGSARASLYFYNTKEEIDLFLQSLQ 407 (420)
T ss_dssp CBCSCTTCH---H-----------HHHHTTC-CCCEEEECCTTCCHHHHHHHHHHHH
T ss_pred Eeeccccch---H-----------HHHhcCC-CCeEEEecCCCCCHHHHHHHHHHHH
Confidence 776643211 0 0111232 5789999997655555555555443
No 23
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.96 E-value=4.2e-27 Score=246.77 Aligned_cols=284 Identities=16% Similarity=0.124 Sum_probs=212.7
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~L 288 (541)
.+...+|+++|++++|.++.+++++|++|+..++.+++++||+|+++.+.|+++.. .++..|+++..++..|++++
T Consensus 89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~l 164 (401)
T 1fc4_A 89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIID----GVRLCKAKRYRYANNDMQEL 164 (401)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHTSCSEEEEECTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHH----HHHHcCCceEEECCCCHHHH
Confidence 67899999999999999888999999999999999999999999999999987653 34567899999988899999
Q ss_pred HHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-c--------cccccCCcEEEEC
Q 009172 289 EAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-Q--------KALSLGADLVLHS 354 (541)
Q Consensus 289 e~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~--------~~l~~gaDivv~S 354 (541)
++++++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++. . ..+..+.|+++.|
T Consensus 165 ~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s 244 (401)
T 1fc4_A 165 EARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGT 244 (401)
T ss_dssp HHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEE
T ss_pred HHHHHHhhccCCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEec
Confidence 9988641 489999999999999999999999999999999999999963322 1 1112357999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTLH---LRVQQQNSTALRMAEILEAHPK 429 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~--~~g~~~s~~~a~l~l~~l~tl~---~r~~~~~~na~~la~~L~~~p~ 429 (541)
+||++++.. ||++++++++++.++.... .+....++..++.+...++.+. ...++..++++++.+.|+++ +
T Consensus 245 ~sK~~~~~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 320 (401)
T 1fc4_A 245 LGKALGGAS---GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAA-G 320 (401)
T ss_dssp SSSTTCSSS---CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred chhhccCCC---CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 999995443 4999999999988876542 2355667777777776776653 55666778888899999876 3
Q ss_pred ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHH
Q 009172 430 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERL 509 (541)
Q Consensus 430 v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~ 509 (541)
+. + +| +.|+++++.+++ ......+.+.|...++.+..|..+.. +
T Consensus 321 ~~-~-~~----------------~~~~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~------------~----- 364 (401)
T 1fc4_A 321 FT-L-AG----------------ADHAIIPVMLGD-AVVAQKFARELQKEGIYVTGFFYPVV------------P----- 364 (401)
T ss_dssp CC-B-CC----------------SSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECTTSS------------C-----
T ss_pred Cc-c-cC----------------CCCCEEEEEcCC-hHHHHHHHHHHHHCCcEEeeecCCCC------------C-----
Confidence 32 1 12 257899999974 23455666666555776665432110 0
Q ss_pred hcCCCCCeEEEEecCCCH----HHHHHHHHHHHh
Q 009172 510 KYGIMDNLVRFSFGVEDF----EDLKADVLQALH 539 (541)
Q Consensus 510 ~~gi~~~~IRlSvG~Ed~----edli~dL~~AL~ 539 (541)
-..+.+||+++...+ +.+++.|.++++
T Consensus 365 ---~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 395 (401)
T 1fc4_A 365 ---KGQARIRTQMSAAHTPEQITRAVEAFTRIGK 395 (401)
T ss_dssp ---TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 124689999996544 444445555444
No 24
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.96 E-value=1.3e-26 Score=239.84 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=205.9
Q ss_pred CCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...++++++++++|. ++++++++|++|+.+++.+++++||+|+++.++|.++... ++..|.++.+++
T Consensus 61 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~ 136 (363)
T 3ffh_A 61 TEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQN----ALIEGAEVREIP 136 (363)
T ss_dssp CCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCSTTCEEEEEESSCHHHHHH----HHHHTCEEEEEE
T ss_pred hhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHHccCCCEEEEcCCChHHHHHH----HHHcCCEEEEec
Confidence 4556777889999999999996 4678888888999999999999999999999999886543 444688888887
Q ss_pred CC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEEcCCCCCCc-------ccccccC
Q 009172 282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-------QKALSLG 347 (541)
Q Consensus 282 ~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~--gillvvDea~a~~~~-------~~~l~~g 347 (541)
.+ |++++++++++ ++++|++++|+||||.++|+++|.++++.+ |+++|+|++|+.... ......+
T Consensus 137 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (363)
T 3ffh_A 137 LLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYK 215 (363)
T ss_dssp CCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCT
T ss_pred CCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCC
Confidence 65 89999999987 599999999999999999999999999887 999999999874321 1111234
Q ss_pred CcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHH
Q 009172 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 348 aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~~~~~na~~la~~L 424 (541)
.++++.|+||.++.+| ...|++++++++++.++..... ...++..++.+...+ +.+..+.++..++++++.+.|
T Consensus 216 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l 292 (363)
T 3ffh_A 216 NLIITRTFSKIYGLAS-ARVGYGIADKEIIRQLNIVRPP--FNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFA 292 (363)
T ss_dssp TEEEEEESSSTTCCSS-CCCEEEEECHHHHHHHHHTCCS--CCCBHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeechhhhcCch-hceeeeecCHHHHHHHHHhCCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999998666 3468888899999988876543 345666665555555 445666677778888999999
Q ss_pred HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCC
Q 009172 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS 504 (541)
Q Consensus 425 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~ 504 (541)
++++++. + +|. .|+++++.++.+ ..++.+.|...++.++.|..+
T Consensus 293 ~~~~g~~-~-~~~----------------~~~~~~~~~~~~---~~~~~~~l~~~gi~v~~g~~~--------------- 336 (363)
T 3ffh_A 293 KRFEKVK-L-YPA----------------NGNFVLIDLGIE---AGTIFSYLEKNGYITRSGAAL--------------- 336 (363)
T ss_dssp HHCTTCE-E-CCC----------------CSSEEEEECSSC---HHHHHHHHHHTTEECEETTTT---------------
T ss_pred hhCCCce-E-CCC----------------CCeEEEEECCCC---HHHHHHHHHHCCeEEEeCccC---------------
Confidence 8876654 2 221 467889998743 334555554457777665431
Q ss_pred HHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 505 QSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 505 ~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+. ++.||||++. ++.++.+.++|+
T Consensus 337 -------~~-~~~iRis~~~---~~~i~~~~~~l~ 360 (363)
T 3ffh_A 337 -------GF-PTAVRITIGK---EEDNSAVIALLE 360 (363)
T ss_dssp -------TC-TTEEEEECCC---HHHHHHHHHHHH
T ss_pred -------CC-CCeEEEECCC---HHHHHHHHHHHH
Confidence 11 5799999993 333444444444
No 25
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.7e-27 Score=249.94 Aligned_cols=303 Identities=14% Similarity=0.082 Sum_probs=215.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHhhcccCCcE
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~al---l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~ 276 (541)
|.|++...+..+++++++++++|.+ ..+++++|++++.+++.++ +++||+|+++.++|+++...+..+.+..|.+
T Consensus 61 ~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~ 140 (406)
T 3cai_A 61 HPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAK 140 (406)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCE
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCe
Confidence 4454445678899999999999975 5667777789999999887 7899999999999998776654444446888
Q ss_pred EEEeCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCc
Q 009172 277 ATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGAD 349 (541)
Q Consensus 277 v~~vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaD 349 (541)
+++++.+ |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|
T Consensus 141 v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d 219 (406)
T 3cai_A 141 VKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDAD 219 (406)
T ss_dssp EEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCS
T ss_pred EEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCC
Confidence 8888754 78999999987 599999999999999999999999999999999999999876432 333456899
Q ss_pred EEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh---------hcCCCccHHHHHHHHHhHHH---------------
Q 009172 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------VLGGALNPNAAYLIIRGMKT--------------- 405 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~---------~~g~~~s~~~a~l~l~~l~t--------------- 405 (541)
+++.|+||++|+. +||+++++++++++++.... ...++.+......+...++.
T Consensus 220 ~~~~s~~K~~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 296 (406)
T 3cai_A 220 VVTVNAHAWGGPP---IGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRER 296 (406)
T ss_dssp EEEEEGGGGTSCS---CEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHH
T ss_pred EEEeehhhhcCCC---cCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhh
Confidence 9999999988743 24399999888776654321 11233344332222222222
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009172 406 ----LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI 481 (541)
Q Consensus 406 ----l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~i 481 (541)
+....++..++++++.+.|++.+++. +..|. ...+++++|.+++. ...++.+.|...++
T Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~L~~~gi 359 (406)
T 3cai_A 297 LAVSMQSADAYLNRVFDYLMVSLRSLPLVM-LIGRP--------------EAQIPVVSFAVHKV--PADRVVQRLADNGI 359 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCTTEE-ECCCC--------------SSBCSEEEEEETTB--CHHHHHHHHHHTTE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCCeE-EcCCc--------------cccCCEEEEEECCc--CHHHHHHHHHHCCc
Confidence 33445556678888889998877653 33221 11345899998741 23345555544577
Q ss_pred eecCCCcccceecCcccccccCCHHHHHhcCCC--CCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 482 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIM--DNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 482 avS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~--~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
.++.|.... ....+|.. .+.||||++..++++.++.+.++|+++
T Consensus 360 ~v~~g~~~~----------------~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~ 405 (406)
T 3cai_A 360 LAIANTGSR----------------VLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALASL 405 (406)
T ss_dssp ECEECCSCH----------------HHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHTC
T ss_pred EEecCChHH----------------HHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHHh
Confidence 777664110 11123432 478999999988787888888888753
No 26
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.96 E-value=3e-27 Score=244.72 Aligned_cols=282 Identities=13% Similarity=0.198 Sum_probs=210.3
Q ss_pred CCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...+||++||+++|. ++++++++|++|+.+++.+++++||+|+++.++|.+.... ++..|.++.+++
T Consensus 59 ~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~ 134 (365)
T 3get_A 59 AHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEIY----AKQCGAKCYKTQ 134 (365)
T ss_dssp TTSCCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHHHTCEEEECS
T ss_pred hccCCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHHhCCCCEEEEeCCChHHHHHH----HHHcCCEEEEEe
Confidence 4455666568999999999995 4678888888999999999999999999999999986543 445688898888
Q ss_pred C-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHH--hCCCEEEEEcCCCCCC---c----cccc---
Q 009172 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH--KKGAIVCIDGTFATPL---N----QKAL--- 344 (541)
Q Consensus 282 ~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~--~~gillvvDea~a~~~---~----~~~l--- 344 (541)
. .|++++++++++ ++++|++++|+||||.++|++++.++++ ++|+++|+|++|+... . ....
T Consensus 135 ~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 213 (365)
T 3get_A 135 SITHNLDEFKKLYETHKD-EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELI 213 (365)
T ss_dssp SSSCCHHHHHHHHHHTTT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHH
T ss_pred cCCCCCCCHHHHHHHhCC-CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHh
Confidence 6 468899999986 5999999999999999999998888888 6799999999987332 1 1111
Q ss_pred -ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHH
Q 009172 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRM 420 (541)
Q Consensus 345 -~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~~~~~na~~l 420 (541)
..+.++++.|+||.++.+| ...|++++++++++.++.....++ .++...+.+...+ +.+..+.++..++++.+
T Consensus 214 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 290 (365)
T 3get_A 214 KEFDNVLYLGTFSKLYGLGG-LRIGYGIANANIISAFYKLRAPFN--VSNLALKAAVAAMDDDEFTEKTLENNFSQMELY 290 (365)
T ss_dssp HHCTTEEEEEESSSTTSCTT-TCCEEEEECHHHHHHHHHHSCTTC--SCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeecchHhcCcc-hheEEEEcCHHHHHHHHHhcCCCC--cCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2367899999999998665 346888889999998887665543 4555544444444 34566667777888899
Q ss_pred HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccccc
Q 009172 421 AEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 500 (541)
Q Consensus 421 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~ 500 (541)
.+.|+++ ++. + +|. .|+++++.+++. ....+.+.|...++.++.|..+
T Consensus 291 ~~~l~~~-g~~-~-~~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~----------- 338 (365)
T 3get_A 291 KEFAKKH-NIK-I-IDS----------------YTNFITYFFDEK--NSTDLSEKLLKKGIIIRNLKSY----------- 338 (365)
T ss_dssp HHHHHHT-TCE-E-CCC----------------SSSEEEEECSSS--CHHHHHHHHHTTTEECEECGGG-----------
T ss_pred HHHHHhC-CCE-E-CCC----------------CCeEEEEECCCC--CHHHHHHHHHHCCEEEEECccC-----------
Confidence 9999887 443 2 221 467889999753 3456666666667777766431
Q ss_pred ccCCHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009172 501 WDLSQSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQAL 538 (541)
Q Consensus 501 ~~~~~~~~~~~gi~~~~IRlSvG~-Ed~edli~dL~~AL 538 (541)
+ ++.||||++. ++.+.+++.|+++|
T Consensus 339 -----------~--~~~iRis~~~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 339 -----------G--LNAIRITIGTSYENEKFFTEFDKIL 364 (365)
T ss_dssp -----------T--CSEEEEECCCHHHHHHHHHHHHHHH
T ss_pred -----------C--CCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 2 5799999994 34556666666554
No 27
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.96 E-value=6e-28 Score=249.54 Aligned_cols=307 Identities=14% Similarity=0.132 Sum_probs=207.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHhhcccCC
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all----~~GD~VIv~~~~y~~~~~~~~~~l~~~G 274 (541)
.|.|++...+..+++++++++++|.+ +++++++|++|+.+++.+++ ++||+|++++++|+++...+. .+...|
T Consensus 34 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~vi~~~~~~~~~~~~~~-~~~~~g 112 (382)
T 4hvk_A 34 VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQG 112 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEEEECCCCcHHHHHHHH-HHHhcC
Confidence 35556666788899999999999975 36667777799999999887 999999999999998776553 345679
Q ss_pred cEEEEeCCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCC
Q 009172 275 ITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGA 348 (541)
Q Consensus 275 i~v~~vd~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~ga 348 (541)
+++.+++.+ |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+ +|+|++++.+.. ......++
T Consensus 113 ~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~ 190 (382)
T 4hvk_A 113 FEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKIGA 190 (382)
T ss_dssp CEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHHTC
T ss_pred CEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhcCC
Confidence 999988754 89999999987 59999999999999999999999999999999 999999876543 33344689
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh-------hhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-------HVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTA 417 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-------~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~~~na 417 (541)
|+++.|+||++|+.| .|+++.+++. .++... ....++.+....+.+...++ .+....++..+++
T Consensus 191 d~~~~s~~K~~g~~g---~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~ 265 (382)
T 4hvk_A 191 DMLTISSNDIYGPKG---VGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLR 265 (382)
T ss_dssp SEEEEESGGGTSCTT---CEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeHHHhcCCCc---eEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999887665 4555554432 111111 11123334444333333333 3344555666778
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcc
Q 009172 418 LRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 418 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~ 497 (541)
+.+.+.|++.|.+. +..+.- .+.+++++|.+++. ....+.+.|...++.++.|..++.....
T Consensus 266 ~~l~~~L~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~-- 327 (382)
T 4hvk_A 266 DRIIDNVLKIEESY-LNGHPE-------------KRLPNNVNVRFSYI--EGESIVLSLDMAGIQASTGSACSSKTLQ-- 327 (382)
T ss_dssp HHHHHHHTTSTTEE-ECSCSS-------------SBCTTEEEEEETTC--CHHHHHHHHHHTTCBCBCC--------C--
T ss_pred HHHHHHHhcCCCeE-EeCCcc-------------ccCCCEEEEEECCC--CHHHHHHHHHHCCEEEeeCCccCCCCCc--
Confidence 88888888777653 222210 12356889998752 2345556665567888887654321111
Q ss_pred cccccCCHHHHHhcCCC----CCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 498 MSYWDLSQSERLKYGIM----DNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 498 ~~~~~~~~~~~~~~gi~----~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
+......+|+. ++.|||+++... .+++++.|.++++
T Consensus 328 ------~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~ 371 (382)
T 4hvk_A 328 ------PSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp ------CCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------chHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 11223344543 589999999654 4455555555543
No 28
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.96 E-value=1.2e-26 Score=242.48 Aligned_cols=286 Identities=15% Similarity=0.130 Sum_probs=212.0
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~ 287 (541)
..+...++++++++++|.++.+++++|++|+..++.+++++||+|+++.++|+++.. .++..|.++..++..|+++
T Consensus 86 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~----~~~~~g~~~~~~~~~d~~~ 161 (399)
T 3tqx_A 86 TQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIID----GIRLCKAQRYRYKNNAMGD 161 (399)
T ss_dssp CBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHH----HHHSCCSEEEEECTTCTTH
T ss_pred CchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHH----HHHHcCCceeEeCCCCHHH
Confidence 467789999999999999999999999999999999999999999999999998654 3455688999998888899
Q ss_pred HHHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-c------ccc--cCCcEEEE
Q 009172 288 LEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K------ALS--LGADLVLH 353 (541)
Q Consensus 288 Le~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~-~------~l~--~gaDivv~ 353 (541)
+++++++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.++.. . ... .+.|+++.
T Consensus 162 l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~ 241 (399)
T 3tqx_A 162 LEAKLKEADEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTG 241 (399)
T ss_dssp HHHHHHHHHTTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEE
T ss_pred HHHHHHhhhccCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEe
Confidence 99888641 4899999999999999999999999999999999999998644321 1 111 26799999
Q ss_pred CCccccCCCCCceEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHhC
Q 009172 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL----HLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~--~~g~~~s~~~a~l~l~~l~tl----~~r~~~~~~na~~la~~L~~~ 427 (541)
|+||+++|. .||++++++++++.+..... .+.+..++..++.+...++.+ ....++..++++.+.+.|+++
T Consensus 242 s~sK~~~g~---~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 318 (399)
T 3tqx_A 242 TLGKALGGA---SGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKL 318 (399)
T ss_dssp ESSSSSCSS---CCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhcccC---ceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 999999943 35999999999988876433 234456676665555555544 445566667788888888775
Q ss_pred CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHH
Q 009172 428 PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSE 507 (541)
Q Consensus 428 p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~ 507 (541)
++. +. ...|+++++.++. ......+.+.|...++.+..+.. +.
T Consensus 319 -g~~-~~-----------------~~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~------~~----------- 361 (399)
T 3tqx_A 319 -GFQ-LV-----------------PGNHPIIPVMLGD-AQLATNMADHLLQEGIYVVGFSY------PV----------- 361 (399)
T ss_dssp -TCC-BC-----------------CCSSSEEEEEEEC-HHHHHHHHHHHHHTTEECCEECT------TT-----------
T ss_pred -CCC-cC-----------------CCCCCEEEEEeCC-HHHHHHHHHHHHHCCCEEeeeCC------CC-----------
Confidence 221 11 1257799999974 34556677766655666553221 10
Q ss_pred HHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 508 RLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 508 ~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
....++.|||+++.. +.+.+++.|.+++++
T Consensus 362 ---~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 395 (399)
T 3tqx_A 362 ---VPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKK 395 (399)
T ss_dssp ---SCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCCceEEEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 011346899999843 445555556665553
No 29
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.96 E-value=1.4e-27 Score=245.26 Aligned_cols=284 Identities=18% Similarity=0.176 Sum_probs=200.1
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----C
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----~ 283 (541)
.++...+||++||+++|.++.++++||++|+.+++.+++++||+|++++++|.+++... ......|+++.+++. .
T Consensus 36 ~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~~ 114 (347)
T 1jg8_A 36 EDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVG-AMAVLSGVMPHPVPGKNGAM 114 (347)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCHHHHSSTT-HHHHHTCCEEEEECEETTEE
T ss_pred CChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHhcCCCCEEEEcCcchhhhcccc-chhhccCeEEEEecCCCCcc
Confidence 57889999999999999998999999999999999999999999999999997654211 123345777777721 2
Q ss_pred CHHHHHHhccC-----CCeeEEEEeCCCCCC-CcccCH---HHHHHHHHhCCCEEEEEcCCCC------CCcccccccCC
Q 009172 284 DMEGLEAALNN-----NNVSLFFTESPTNPF-LRCVDV---KLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGA 348 (541)
Q Consensus 284 dle~Le~ai~~-----~~tklV~lesp~NPt-G~v~di---~~Ia~la~~~gillvvDea~a~------~~~~~~l~~ga 348 (541)
|+++|++++++ .+|++|++++|+||| |.++|. ++|.++|+++|++||+|+++.. +.....+..++
T Consensus 115 d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~ 194 (347)
T 1jg8_A 115 DPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYA 194 (347)
T ss_dssp CHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTC
T ss_pred CHHHHHHHhccccccccCceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccc
Confidence 89999999975 159999999999999 999874 6888999999999999998632 11222233468
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEA 426 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~--s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~ 426 (541)
|.++.|+||+++++ +||+++++++++++++..+..++... +...++++..+++....++++..++++.+.+.|++
T Consensus 195 d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~ 271 (347)
T 1jg8_A 195 DSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKE 271 (347)
T ss_dssp SEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHHSSTTHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999999865 36678889988888876655555433 44555555556665444556666778888888887
Q ss_pred CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHH
Q 009172 427 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 506 (541)
Q Consensus 427 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~ 506 (541)
+ ++. +.++ ...++++++.++.......+|.+.|...++.++.+
T Consensus 272 ~-~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~-------------------- 314 (347)
T 1jg8_A 272 I-GYS-VNPE---------------DVKTNMVILRTDNLKVNAHGFIEALRNSGVLANAV-------------------- 314 (347)
T ss_dssp H-TCB-CCGG---------------GCCSSEEEEECTTSSSCHHHHHHHHHHHTEECEEE--------------------
T ss_pred c-Cce-eccC---------------CCcceEEEEEcccccCCHHHHHHHHHHCCCEEecC--------------------
Confidence 5 332 1111 11467899998731112445666665446555421
Q ss_pred HHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 507 ERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 507 ~~~~~gi~~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
..+.|||+++... .+.+++.|.++++
T Consensus 315 -------~~~~iRl~~~~~~~~e~i~~~~~~l~~~l~ 344 (347)
T 1jg8_A 315 -------SDTEIRLVTHKDVSRNDIEEALNIFEKLFR 344 (347)
T ss_dssp -------ETTEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred -------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 1357999997543 4444455554443
No 30
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.96 E-value=3.6e-27 Score=244.33 Aligned_cols=284 Identities=15% Similarity=0.228 Sum_probs=208.1
Q ss_pred CCCCCchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
+.+|+++...+|+++|++++|. ++.+++++|++|+.+++.+++++||+|+++.++|.++... ++..|.++.++
T Consensus 61 ~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v 136 (367)
T 3euc_A 61 LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPGFVMYAMS----AQFAGLEFVGV 136 (367)
T ss_dssp TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHTCCTTCEEEEEESCSCCSCHH----HHTTTCEEEEE
T ss_pred hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHHcCCCCEEEEcCCCHHHHHHH----HHHcCCeEEEe
Confidence 4456667789999999999997 3556666667999999999999999999999999987643 44568888887
Q ss_pred CC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhC--CCEEEEEcCCCCCCcc----ccccc
Q 009172 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKK--GAIVCIDGTFATPLNQ----KALSL 346 (541)
Q Consensus 281 d~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~--gillvvDea~a~~~~~----~~l~~ 346 (541)
+. .|+++|+++++++++++|++++|+||||.+++ +++|+++|++| |+++|+|++|...... .....
T Consensus 137 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 216 (367)
T 3euc_A 137 PLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDF 216 (367)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTC
T ss_pred cCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhC
Confidence 63 38999999998634999999999999999975 66778889999 9999999998754321 11234
Q ss_pred CCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Q 009172 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 347 gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~---tl~~r~~~~~~na~~la~~ 423 (541)
+.++++.|+||+ +.+| ...|++++++++++.++.....+ ..++..++.+...++ .+..+.++..++++++.+.
T Consensus 217 ~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 292 (367)
T 3euc_A 217 GNLLVMRTVSKL-GLAG-IRLGYVAGDPQWLEQLDKVRPPY--NVNVLTEATALFALEHVAVLDEQAAQLRAERSRVAEG 292 (367)
T ss_dssp TTEEEEEECCCT-TSCS-CCEEEEEECHHHHHHHGGGCCSS--CCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecchhh-cccc-cCceeeeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999 5555 45789999999988887655433 345555555444443 3566667777888999999
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccC
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 503 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~ 503 (541)
|+++|++. + +|. .|+++++.++ + ...+.+.|...++.++.|+.+.
T Consensus 293 l~~~~g~~-~-~~~----------------~~~~~~~~~~-~---~~~l~~~l~~~gi~v~~~~~~~------------- 337 (367)
T 3euc_A 293 MAAHGGVT-V-FPS----------------AANFLLARVP-D---AAQTFDRLLARKVLIKNVSKMH------------- 337 (367)
T ss_dssp HHTSTTCE-E-CCC----------------SSSEEEEECS-C---HHHHHHHHHTTTEECEECGGGC-------------
T ss_pred HHhCCCcE-E-CCC----------------CCeEEEEECC-C---HHHHHHHHHHCCeEEEECCccC-------------
Confidence 99887765 3 332 4678888886 3 3455666666687777664321
Q ss_pred CHHHHHhcCCCCCeEEEEecC-CCHHHHHHHHHHHH
Q 009172 504 SQSERLKYGIMDNLVRFSFGV-EDFEDLKADVLQAL 538 (541)
Q Consensus 504 ~~~~~~~~gi~~~~IRlSvG~-Ed~edli~dL~~AL 538 (541)
+..++.||||++. ++.+.+++.|++++
T Consensus 338 --------~~~~~~iRis~~~~~~i~~~~~~l~~~l 365 (367)
T 3euc_A 338 --------PLLANCLRVTVSTPEENAQFLEAFAASL 365 (367)
T ss_dssp --------GGGTTEEEEECCCHHHHHHHHHHHHHHT
T ss_pred --------CCCCCEEEEecCCHHHHHHHHHHHHHHh
Confidence 0135799999994 24555566655554
No 31
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.96 E-value=5.7e-27 Score=247.23 Aligned_cols=305 Identities=18% Similarity=0.201 Sum_probs=211.2
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhcc----CCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVP----AGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~----~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
+++...+..++++++|++++|.+ .++++++|++|+.+++.++++ +||+|+++.++|+++...+.. +...|+++
T Consensus 62 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~-~~~~g~~~ 140 (423)
T 3lvm_A 62 FGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQ-LEREGFEV 140 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHH-HHHTTCEE
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHH-HHHcCCEE
Confidence 33344567789999999999986 788888899999999998874 899999999999997765543 36678999
Q ss_pred EEeCCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEE
Q 009172 278 TVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLV 351 (541)
Q Consensus 278 ~~vd~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDiv 351 (541)
.+++.+ |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|++||+|++++.+.. ......++|++
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~ 219 (423)
T 3lvm_A 141 TYLAPQRNGIIDLKELEAAMRD-DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLM 219 (423)
T ss_dssp EEECCCTTSCCCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEE
T ss_pred EEeccCCCCccCHHHHHHhcCC-CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEE
Confidence 888754 89999999987 599999999999999999999999999999999999999876543 44456689999
Q ss_pred EECCccccCCCCCceEEEEEeChHHHHHHHHHhh-------hcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHH
Q 009172 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRM 420 (541)
Q Consensus 352 v~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-------~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~l 420 (541)
+.|+||.+++.+ .|+++++++..+.+..... ...++.+......+...++. +....++..++++.+
T Consensus 220 ~~s~sK~~g~~g---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l 296 (423)
T 3lvm_A 220 SFSGHKIYGPKG---IGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRL 296 (423)
T ss_dssp EEESTTTTSCSS---CEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EechHHhcCCCC---eEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888766 5778887765554433211 11223344433333333332 344556666778888
Q ss_pred HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccccc
Q 009172 421 AEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 500 (541)
Q Consensus 421 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~ 500 (541)
.+.|+++|.+..+..+. ...++++.|.+++. ....+.+.|.. +.+..|..++....
T Consensus 297 ~~~L~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~l~~~l~~--i~v~~g~~~~~~~~------ 352 (423)
T 3lvm_A 297 WNGIKDIEEVYLNGDLE--------------HGAPNILNVSFNYV--EGESLIMALKD--LAVSSGSACTSASL------ 352 (423)
T ss_dssp HHHHTTSTTEEEESCST--------------TBCTTEEEEEETTS--CHHHHHHHTTT--EECBCCCC-----C------
T ss_pred HHHHhcCCCEEEeCCcc--------------ccCCCeEEEEeCCC--CHHHHHHHHhh--heeccCccccCCCc------
Confidence 88888777654332111 12356888888642 34556666665 77777754332110
Q ss_pred ccCCHHHHHhcCCC----CCeEEEEecCCCH----HHHHHHHHHHHh
Q 009172 501 WDLSQSERLKYGIM----DNLVRFSFGVEDF----EDLKADVLQALH 539 (541)
Q Consensus 501 ~~~~~~~~~~~gi~----~~~IRlSvG~Ed~----edli~dL~~AL~ 539 (541)
.+.......|+. .+.|||+++...+ +.+++.|.++++
T Consensus 353 --~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~ 397 (423)
T 3lvm_A 353 --EPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG 397 (423)
T ss_dssp --CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred --cccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 011223344554 4899999996544 444555555443
No 32
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.95 E-value=6.1e-27 Score=241.15 Aligned_cols=283 Identities=14% Similarity=0.171 Sum_probs=209.3
Q ss_pred CCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...+|+++||+++|. ++.+++++|++|+.+++.+++++||+|+++.++|.+... .++..|.++.+++
T Consensus 45 ~~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~----~~~~~g~~~~~~~ 120 (354)
T 3ly1_A 45 ANRYAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEH----FAKIAGMKVTKVK 120 (354)
T ss_dssp TTSCCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSSCTHHHH----HHHHTTCEEEEEC
T ss_pred CcCCCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHHhCCCCeEEECCCCchHHHH----HHHHcCCEEEEec
Confidence 4556788899999999999996 467777777899999999999999999999999998654 3445689999888
Q ss_pred CC-----CHHHHHHhccC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEEcCCCCCCcc----ccc----c
Q 009172 282 PA-----DMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQ----KAL----S 345 (541)
Q Consensus 282 ~~-----dle~Le~ai~~-~~tklV~lesp~NPtG~v~di~~Ia~la~~--~gillvvDea~a~~~~~----~~l----~ 345 (541)
.+ |+++|++++++ .++++|++++|+||||.++|++++.++++. +|+++|+|++|...... ... .
T Consensus 121 ~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 200 (354)
T 3ly1_A 121 MLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQ 200 (354)
T ss_dssp CCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHT
T ss_pred CCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhh
Confidence 66 89999999982 259999999999999999999988888877 99999999998754321 111 2
Q ss_pred c-CCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHH
Q 009172 346 L-GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMA 421 (541)
Q Consensus 346 ~-gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~~~~~na~~la 421 (541)
. +.++++.|+||.++.+| ...|++++++++++.++..... ...++...+++...+ +.+..+.++..++++.+.
T Consensus 201 ~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~ 277 (354)
T 3ly1_A 201 GAENIILLKTFSKIHAMAG-MRVGYAVAHPTVIALMGRYVAG--EKINFSGVDAALASMNDSAFITYSKKSNDVSRQILL 277 (354)
T ss_dssp TCSSEEEEEESSSTTCCGG-GCCEEEECCHHHHHHHGGGTTC--SCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeeChhhccChh-hhheeeecCHHHHHHHHHhcCC--CCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2 66799999999997444 3478999999999888776554 344555555444444 345566677778888888
Q ss_pred HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccc
Q 009172 422 EILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 501 (541)
Q Consensus 422 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~ 501 (541)
+.|+++ .+. + +| +.|+++++.++++ ..++.+.|...++.++ |...
T Consensus 278 ~~l~~~-~~~-~-~~----------------~~~~~~~~~~~~~---~~~~~~~l~~~gi~v~-g~~~------------ 322 (354)
T 3ly1_A 278 KALEDL-KLP-Y-LP----------------SEGNFVFHQLVVP---LKDYQTHMADAGVLIG-RAFP------------ 322 (354)
T ss_dssp HHHHHH-TCC-B-CC----------------CCSSEEEEECSSC---HHHHHHHHHHTTEECC-CCCT------------
T ss_pred HHHHHC-CCe-E-CC----------------CCceEEEEECCCC---HHHHHHHHHHCCEEEe-ecCC------------
Confidence 888875 322 1 12 1467889998753 3344555544577766 5321
Q ss_pred cCCHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009172 502 DLSQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH 539 (541)
Q Consensus 502 ~~~~~~~~~~gi~~~~IRlSvG~E-d~edli~dL~~AL~ 539 (541)
+ .++.||||++.+ +.+.+++.|.++++
T Consensus 323 ----------~-~~~~iRis~~~~~~i~~~~~~l~~~l~ 350 (354)
T 3ly1_A 323 ----------P-ADNWCRISLGTPQEMQWVADTMREFRK 350 (354)
T ss_dssp ----------T-CTTEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred ----------C-CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0 357999999853 45666777776665
No 33
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.95 E-value=6.2e-27 Score=243.25 Aligned_cols=291 Identities=14% Similarity=0.167 Sum_probs=207.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
.+.|+ ..+...+|+++|+++++. ++++++++|++|+.+++.+++++||+|+++.+.|.++... +...|.++
T Consensus 56 ~~~y~--~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~ 129 (375)
T 3op7_A 56 KLNYG--WIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDI----PKSLGAEV 129 (375)
T ss_dssp CCSSC--CTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHH----HHHTTCEE
T ss_pred CcCCC--CCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEE
Confidence 34454 345578999999998742 5788888888999999999999999999999999987643 34567777
Q ss_pred EEeCCC-------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCccc----c
Q 009172 278 TVIDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----A 343 (541)
Q Consensus 278 ~~vd~~-------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~----~ 343 (541)
..++.+ |+++|++++++ ++++|++++|+||||.+.| +++|.++|++||+++|+|++|....... .
T Consensus 130 ~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~ 208 (375)
T 3op7_A 130 DLWQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSII 208 (375)
T ss_dssp EEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHH
T ss_pred EEEeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchh
Confidence 776532 89999999987 5999999999999999999 9999999999999999999987643211 1
Q ss_pred cccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH----HHHHHHHHHHH
Q 009172 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL----RVQQQNSTALR 419 (541)
Q Consensus 344 l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~----r~~~~~~na~~ 419 (541)
...+.++++.|+||.++.+| ..+|++++++++++.++......+...++..++++...++..+. +.++..++++.
T Consensus 209 ~~~~~~i~~~s~sK~~~~~G-~r~G~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 287 (375)
T 3op7_A 209 EVYDKGIAVNSLSKTYSLPG-IRIGWVAANHQVTDILRDYRDYTMICAGVFDDLVAQLALAHYQEILERNRHILEENLAI 287 (375)
T ss_dssp HHCTTEEEEEESSSSSSCGG-GCCEEEECCHHHHHHHTTTGGGTTSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeEChhhcCCcc-cceEEEEeCHHHHHHHHHHHhhhccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 12456799999999998555 34788889999999988766655555666666666555554332 23334677888
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCcccceecCccc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L-~~~~iavS~G~~~sl~~~pa~~ 498 (541)
+.+.|++++.+..+ .|. .|.++++.++.+ .....+...+ +..++.+..|..+.
T Consensus 288 l~~~l~~~~~~~~~-~~~----------------~~~~~~~~~~~~-~~~~~~~~~ll~~~gi~v~~g~~~~-------- 341 (375)
T 3op7_A 288 LDQWIEEEPLVSYI-RPA----------------VVSTSFVKIAVD-MPMEDFCLQLLQEHGVLLVPGNRFE-------- 341 (375)
T ss_dssp HHHHHHHCTTEEEC-CCS----------------SSSCEEEEECCS-SCHHHHHHHHHHHHCEECEEGGGGT--------
T ss_pred HHHHHhhCCCceEe-cCC----------------CeEEEeEEcCCC-CCHHHHHHHHHHhCCEEEeChhhhC--------
Confidence 88899887766422 221 234556666532 1223444443 33455555443211
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA 540 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~~ 540 (541)
.++.+||+++.. +.++.++.|.+++++
T Consensus 342 ---------------~~~~iRi~~~~~~~~i~~~l~~l~~~l~~ 370 (375)
T 3op7_A 342 ---------------RDGYVRLGFACEQETLIKGLEKLSQFLRR 370 (375)
T ss_dssp ---------------CTTEEEECCCSCHHHHHHHHHHHHHHHGG
T ss_pred ---------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 157899999875 355566666666653
No 34
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.95 E-value=4.2e-27 Score=251.41 Aligned_cols=258 Identities=19% Similarity=0.238 Sum_probs=208.8
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEE---eCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHH------hhcccCCcE
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVI---MASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIE------TVLPKMGIT 276 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~---~sSG~~Ai~~al~all~~GD~VIv~~-~~y~~~~~~~~------~~l~~~Gi~ 276 (541)
|+++..+++++.+++++|.+..++ ++||++|+.+++.+++++||+|+++. +.|+.+...+. ..++..|++
T Consensus 62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~ 141 (431)
T 3ht4_A 62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIG 141 (431)
T ss_dssp CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCE
T ss_pred CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCE
Confidence 455679999999999999987766 88999999999999999999999998 99998765542 345668999
Q ss_pred EEEeCC-----CCHHHHHHhccCCCeeEEEEeC-CCCCC---CcccCHHHHHHHHHh--CCCEEEEEcCCCCCC-ccccc
Q 009172 277 ATVIDP-----ADMEGLEAALNNNNVSLFFTES-PTNPF---LRCVDVKLVSDLCHK--KGAIVCIDGTFATPL-NQKAL 344 (541)
Q Consensus 277 v~~vd~-----~dle~Le~ai~~~~tklV~les-p~NPt---G~v~di~~Ia~la~~--~gillvvDea~a~~~-~~~~l 344 (541)
+++++. .|+++|++++++ +|++|++++ |+||+ |.+.|+++|.++|++ +|+++|+|++|+.+. ..++.
T Consensus 142 ~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~ 220 (431)
T 3ht4_A 142 YNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPC 220 (431)
T ss_dssp EEECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGG
T ss_pred EEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcc
Confidence 999986 389999999987 599999995 55555 555678899999999 999999999998876 36788
Q ss_pred ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhh--cCCCccH--HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009172 345 SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNP--NAAYLIIRGMKTLHLRVQQQNSTALRM 420 (541)
Q Consensus 345 ~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~--~g~~~s~--~~a~l~l~~l~tl~~r~~~~~~na~~l 420 (541)
..|+|+++.|++|+++|+.+..||++++++++++.++..... .|...++ ..+++++++++++..+++++.+++..+
T Consensus 221 ~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~l 300 (431)
T 3ht4_A 221 HVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFFLAPHVAGQALKGAIFT 300 (431)
T ss_dssp GTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 889999999999999987666789999999999988764433 2222222 225667889999999999999999999
Q ss_pred HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009172 421 AEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 480 (541)
Q Consensus 421 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ 480 (541)
+++|++++. .+ +|. ++++. .+-+++|.++ +.+.+.+|++.|+.+.
T Consensus 301 ~~~L~~~g~--~v-~p~-~~~~~----------~~li~~i~l~-~~~~~~~~~~~l~~~~ 345 (431)
T 3ht4_A 301 AAFLEKLGM--NT-SPA-WNAPR----------TDLIQSVQFD-DKDRMIAFCQAIQYAS 345 (431)
T ss_dssp HHHHHHHTC--CE-ESC-TTSCC----------SSSCCEEECC-CHHHHHHHHHHHHHTS
T ss_pred HHHHHhCcC--Ee-cCC-CCCCC----------ccEEEEEEeC-CHHHHHHHHHHHHhcC
Confidence 999998764 34 565 44443 3448899996 5678889999887654
No 35
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.95 E-value=7.6e-27 Score=243.85 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=206.4
Q ss_pred CchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh----ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL----VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~al----l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
..+...+++++|++++|. +..+++++|++|+.+++.++ +++||+|+++.++|+++...+....+..|.++.++
T Consensus 65 ~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~ 144 (406)
T 1kmj_A 65 ATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVI 144 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEE
Confidence 456788999999999998 45777778889999999999 89999999999999997665555556668888888
Q ss_pred CC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEEC
Q 009172 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (541)
Q Consensus 281 d~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S 354 (541)
+. .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....+.|+++.|
T Consensus 145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s 223 (406)
T 1kmj_A 145 PLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFS 223 (406)
T ss_dssp CBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEE
T ss_pred ecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEE
Confidence 75 378999999987 599999999999999999999999999999999999999876532 23334579999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHH-HhHHHH-----H
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLII-RGMKTL-----H 407 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~---------------------~~g~~~s~~~a~l~l-~~l~tl-----~ 407 (541)
+||.+|+.| .|++++++++++.++.... .+....++..+++++ ..++.+ .
T Consensus 224 ~~K~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~ 300 (406)
T 1kmj_A 224 GHKLYGPTG---IGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLN 300 (406)
T ss_dssp GGGTTSCTT---CEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHH
T ss_pred chhccCCCC---cEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999997765 5899999888887654321 010111222222222 333333 2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCC
Q 009172 408 LRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGG 487 (541)
Q Consensus 408 ~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~ 487 (541)
...++..++++.+.+.|++.|++. +..|. +.|+++.|.+++. ....+.+.|...++.+..|.
T Consensus 301 ~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~ 362 (406)
T 1kmj_A 301 NIAEYEQNLMHYALSQLESVPDLT-LYGPQ---------------NRLGVIAFNLGKH--HAYDVGSFLDNYGIAVRTGH 362 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTEE-EESCT---------------TCCSEEEEEETTC--CHHHHHHHHHHTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeE-EecCC---------------CcCCEEEEEECCC--CHHHHHHHHhhCCcEEEecc
Confidence 344556677888888888876653 22221 1367888888641 12344455555566666553
Q ss_pred cccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 488 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 488 ~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.+.. ......|. ++.||||++..++++.++.+.++|+
T Consensus 363 ~~~~--------------~~~~~~g~-~~~iRis~~~~~t~~~i~~~~~~l~ 399 (406)
T 1kmj_A 363 HCAM--------------PLMAYYNV-PAMCRASLAMYNTHEEVDRLVTGLQ 399 (406)
T ss_dssp TTCH--------------HHHHHTTC-SCEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccch--------------HHHHhcCC-CCeEEEEeecCCCHHHHHHHHHHHH
Confidence 3210 01112332 5799999998655544555555444
No 36
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.95 E-value=2.2e-26 Score=244.57 Aligned_cols=285 Identities=15% Similarity=0.136 Sum_probs=212.4
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~ 287 (541)
..+...+|+++|++++|.++.++++||++|+..++.+++++||+|+++.+.|+++...+ +..|.++..++..|+++
T Consensus 107 ~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~----~~~g~~~~~~~~~d~~~ 182 (427)
T 2w8t_A 107 TFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGC----QQGNAEIVRFRHNSVED 182 (427)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHH----HHSCSEEEEECTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHH----HHcCCeeEEeCCCCHHH
Confidence 35788999999999999999999999999999999999999999999999999866443 44588888899899999
Q ss_pred HHHhccCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc---------cccccCCcEEEECC
Q 009172 288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---------KALSLGADLVLHSA 355 (541)
Q Consensus 288 Le~ai~~~---~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~---------~~l~~gaDivv~S~ 355 (541)
|++++++. ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+... ..+..++|+++.|+
T Consensus 183 le~~l~~~~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~ 262 (427)
T 2w8t_A 183 LDKRLGRLPKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTF 262 (427)
T ss_dssp HHHHHHTSCSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEES
T ss_pred HHHHHHhccCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecc
Confidence 99998752 5899999999999999999999999999999999999998765432 11123579999999
Q ss_pred ccccCCCCCceEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCc
Q 009172 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 356 sK~lgg~g~v~gG~vv~~~~li~~l~~~~--~~~g~~~s~~~a~l~l~~l~tl---~~r~~~~~~na~~la~~L~~~p~v 430 (541)
+|++|.. ||++++++++++.+.... ..++...++..+..+...++.+ ....++..++++++.+.|++. ++
T Consensus 263 sK~~g~~----gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 337 (427)
T 2w8t_A 263 SKSVGTV----GGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAM-GF 337 (427)
T ss_dssp SSTTCSC----CEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred hhhhccC----CCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 9999844 499999988887765432 2334556676666655666655 556677778888888888875 33
Q ss_pred eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHh
Q 009172 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 510 (541)
Q Consensus 431 ~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~ 510 (541)
. +..+. +.|++++|.+++ .....++.+.|...++.+..|..+.. +
T Consensus 338 ~-~~~~~---------------~~~~~~~~~~~~-~~~~~~l~~~L~~~Gi~v~~~~~~~~------------~------ 382 (427)
T 2w8t_A 338 R-LGTET---------------CDSAIVAVMLED-QEQAAMMWQALLDGGLYVNMARPPAT------------P------ 382 (427)
T ss_dssp E-ESCSS---------------CCSSEEEEEESS-HHHHHHHHHHHHHTTEECEEECTTTS------------C------
T ss_pred c-ccCCC---------------CCCCEEEEEECC-HHHHHHHHHHHHHCCeEEeeeCCCCC------------C------
Confidence 2 21111 146799999964 34566677777655766665432110 0
Q ss_pred cCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009172 511 YGIMDNLVRFSFGVEDFEDLKADVLQAL 538 (541)
Q Consensus 511 ~gi~~~~IRlSvG~Ed~edli~dL~~AL 538 (541)
...+.|||+++...+++.++.+.++|
T Consensus 383 --~~~~~lRi~~~~~~t~e~i~~~~~~l 408 (427)
T 2w8t_A 383 --AGTFLLRCSICAEHTPAQIQTVLGMF 408 (427)
T ss_dssp --TTCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred --CCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 12468999999754444444444444
No 37
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.95 E-value=2.3e-26 Score=239.50 Aligned_cols=298 Identities=17% Similarity=0.137 Sum_probs=207.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhC----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALEG----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~g----~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
..+.|+....+..+++++.+++.+| .+..+++++|++|+.+++.+++++||+|+++.++|+++... +...|.
T Consensus 56 ~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~ 131 (391)
T 3dzz_A 56 AAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQFTSPGDQILVQEPVYNMFYSV----IEGNGR 131 (391)
T ss_dssp CCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCHHHHHH----HHHTTC
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHhCCCCCeEEECCCCcHHHHHH----HHHcCC
Confidence 3466776666677778888888777 24677777778999999999999999999999999986643 445688
Q ss_pred EEEEeCC--------CCHHHHHHhccCCCeeEEEEeCCCCCCCcc---cCHHHHHHHHHhCCCEEEEEcCCCCCCc----
Q 009172 276 TATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRC---VDVKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (541)
Q Consensus 276 ~v~~vd~--------~dle~Le~ai~~~~tklV~lesp~NPtG~v---~di~~Ia~la~~~gillvvDea~a~~~~---- 340 (541)
++..++. .|+++|+++++..++++|++++|+||||.+ .++++|.++|++||+++|+|++|.....
T Consensus 132 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 211 (391)
T 3dzz_A 132 RVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDED 211 (391)
T ss_dssp EEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCC
T ss_pred EEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCC
Confidence 8888765 589999999984369999999999999999 5688999999999999999999875322
Q ss_pred -ccccccC---Cc--EEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcC-CCccHHHHHHHHHhHHH----HHH
Q 009172 341 -QKALSLG---AD--LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHL 408 (541)
Q Consensus 341 -~~~l~~g---aD--ivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g-~~~s~~~a~l~l~~l~t----l~~ 408 (541)
......+ .| +++.|+||.++.+| ...|+++++ +++++.++......+ ...++...+.+...++. +..
T Consensus 212 ~~~~~~~~~~~~d~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 290 (391)
T 3dzz_A 212 ITPAFTVDWDAKNWVVSLISPSKTFNLAA-LHAACAIIPNPDLRARAEESFFLAGIGEPNLLAIPAAIAAYEEGHDWLRE 290 (391)
T ss_dssp CCCGGGSCTTTGGGEEEEECSHHHHTCTT-TCCEEEECCSHHHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHHCHHHHHH
T ss_pred ceehhhcCccccCcEEEEEeChhhccccc-hhheEEEECCHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 1122222 45 99999999997555 346888886 888888877644332 23444444443334433 555
Q ss_pred HHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCC
Q 009172 409 RVQQQNSTALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFG 486 (541)
Q Consensus 409 r~~~~~~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L-~~~~iavS~G 486 (541)
+.++..++++.+.+.|++ .|.+. +..|. .+.++++.++........+.+.| +..++.++.|
T Consensus 291 ~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g 353 (391)
T 3dzz_A 291 LKQVLRDNFAYAREFLAKEVPEVK-VLDSN----------------ASYLAWVDISALGMNAEDFCKYLREKTGLIISAG 353 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSE-ECCCC----------------BSSEEEEECGGGCSCHHHHHHHHHHHHCEECEES
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcE-EeccC----------------ceEEEEEehhhcCCCHHHHHHHHHHhCCEEEeCc
Confidence 666777888899999988 67764 32221 34466788763111234555555 3557777766
Q ss_pred CcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009172 487 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA 540 (541)
Q Consensus 487 ~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~~ 540 (541)
..+.. ..++.||||++.. +.++.++.|.+++++
T Consensus 354 ~~~~~---------------------~~~~~iRis~~~~~~~i~~~l~~l~~~l~~ 388 (391)
T 3dzz_A 354 NGYRG---------------------NGHEFVRINLACPKELVIDGMQRLKQGVLN 388 (391)
T ss_dssp GGGCT---------------------TGGGEEEEECCSCHHHHHHHHHHHHHHHHT
T ss_pred hhhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 54321 1257899999952 344555666666654
No 38
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.95 E-value=8.9e-28 Score=251.28 Aligned_cols=307 Identities=15% Similarity=0.154 Sum_probs=203.3
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----cCCC-EEEEcCCCCcchHHHHHhhcccC
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGG-HIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all----~~GD-~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
.|.|+++..+..+++++++++++|.+ .++++++|++|+.+++.+++ ++|| +|+++.++|+++...+.. +...
T Consensus 54 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~-~~~~ 132 (400)
T 3vax_A 54 RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEH-LAGR 132 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHH-HHTT
T ss_pred cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHH-HHhc
Confidence 35566666788899999999999975 57778888899999999987 8999 999999999987766644 3567
Q ss_pred CcEEEEeCCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccC
Q 009172 274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG 347 (541)
Q Consensus 274 Gi~v~~vd~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~g 347 (541)
|+++.+++.+ |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....
T Consensus 133 g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~- 210 (400)
T 3vax_A 133 GFEVDFLTPGPSGRISVEGVMERLRP-DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP- 210 (400)
T ss_dssp TCEEEEECCCTTCCCCHHHHHTTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-
T ss_pred CCeEEEEccCCCCCcCHHHHHHhcCC-CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-
Confidence 9999988754 89999999987 599999999999999999999999999999999999999876543 222234
Q ss_pred CcEEEECCccccCCCCCceEEEEE-eCh-HHH---HHHHHHh-------hhcCCCccHHHHHHHHHhHHHH----HHHHH
Q 009172 348 ADLVLHSATKFIGGHNDVLAGSIS-GSG-KLV---TQIRNLH-------HVLGGALNPNAAYLIIRGMKTL----HLRVQ 411 (541)
Q Consensus 348 aDivv~S~sK~lgg~g~v~gG~vv-~~~-~li---~~l~~~~-------~~~g~~~s~~~a~l~l~~l~tl----~~r~~ 411 (541)
+|+++.|+||.+++.| .|+++ .++ ++. ..+.... ....++.+....+.+...++.+ ....+
T Consensus 211 ~d~~~~s~~K~~g~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~ 287 (400)
T 3vax_A 211 IDMISISGHKIGAPKG---VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQV 287 (400)
T ss_dssp CSEEEEETGGGTSCSS---CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred CcEEEEeHHHhCCCCc---eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8999999999777654 35555 543 111 1111111 1122334444444444444433 34445
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccc
Q 009172 412 QQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESI 491 (541)
Q Consensus 412 ~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl 491 (541)
+..++++++.+.|+ .+++. +..|. ....+++++|.+++ .....+.+.|. .++.++.|..++.
T Consensus 288 ~~~~~~~~l~~~L~-~~~~~-~~~~~-------------~~~~~~~~~~~~~~--~~~~~l~~~L~-~gi~v~~g~~~~~ 349 (400)
T 3vax_A 288 AAQDLRSRLLAGLA-STSFQ-VNGDQ-------------DHVVPHILNLSFED--VDAEAFLVTLK-DLVAVATGSASTS 349 (400)
T ss_dssp HHHHHHHHHHHHHT-TTTCE-ECSCT-------------TSBCTTEEEEECTT--CCHHHHHHHHH-HHHHHTTTTEEEE
T ss_pred HHHHHHHHHHHhhC-CCCEE-EeCCc-------------ccCCCCEEEEEeCC--CCHHHHHHHHh-cCcEEEecccccC
Confidence 55667777777777 66553 22221 01246789998875 23456677777 7888888865443
Q ss_pred eecCcccccccCCHHHHHhcCCC----CCeEEEEe-cCCC----HHHHHHHHHHHHh
Q 009172 492 VDQPAIMSYWDLSQSERLKYGIM----DNLVRFSF-GVED----FEDLKADVLQALH 539 (541)
Q Consensus 492 ~~~pa~~~~~~~~~~~~~~~gi~----~~~IRlSv-G~Ed----~edli~dL~~AL~ 539 (541)
...+ +......+|+. ++.||||+ +... .+++++.|+++++
T Consensus 350 ~~~~--------~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 350 ASFT--------PSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEEC--------CHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred CCCC--------ccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 2111 12233345555 48999999 8544 4444555544443
No 39
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.95 E-value=4e-26 Score=236.71 Aligned_cols=279 Identities=15% Similarity=0.203 Sum_probs=200.1
Q ss_pred CCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 205 GRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
.+|+++...+|+++||+++|.+ +.+++++|++++.+++.+++++| |+|+++.|+|+++...+ ...|.++..++
T Consensus 53 ~~Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~~~g~d~Vl~~~p~~~~~~~~~----~~~g~~~~~v~ 128 (356)
T 1fg7_A 53 NRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSA----ETIGVECRTVP 128 (356)
T ss_dssp TSCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSCTHHHHHH----HHHTCEEEECC
T ss_pred ccCCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHhCCCCCEEEEeCCChHHHHHHH----HHcCCEEEEee
Confidence 4566666789999999999874 45555555699999999999999 99999999999866443 34578888776
Q ss_pred C-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHH---HHHHhCCCEEEEEcCCCCCCc-ccc----cccCC
Q 009172 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS---DLCHKKGAIVCIDGTFATPLN-QKA----LSLGA 348 (541)
Q Consensus 282 ~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia---~la~~~gillvvDea~a~~~~-~~~----l~~ga 348 (541)
. .|+++++++++ ++++|++++|+||||.++|.++|. ++|+ +|+++|+||+|..+.. ... ...+.
T Consensus 129 ~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~ 205 (356)
T 1fg7_A 129 TLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPH 205 (356)
T ss_dssp CCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTT
T ss_pred CCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCC
Confidence 4 37899999887 499999999999999999866555 5555 8999999999875431 111 12357
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----l~~r~~~~~~na~~la~~ 423 (541)
++++.|+||.+|.+| ...|++++++++++.++.....+ ..++...+.+...++. +....++..++++++.+.
T Consensus 206 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 282 (356)
T 1fg7_A 206 LAILRTLSKAFALAG-LRCGFTLANEEVINLLMKVIAPY--PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA 282 (356)
T ss_dssp EEEEEESSSTTCCGG-GCCEEEEECHHHHHHHHHHSCSS--CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecchHhhcCch-hhhEEEEeCHHHHHHHHHhcCCC--CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998655 34688889999998888765544 3455555555554433 445556667788889999
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC-CCcccceecCccccccc
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF-GGCESIVDQPAIMSYWD 502 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~-G~~~sl~~~pa~~~~~~ 502 (541)
|++++.+.. ..|. .|++++++++ + ..++.+.|...++.+.. |..+
T Consensus 283 L~~~~~~~~-~~~~----------------~~~~~~~~~~-~---~~~l~~~L~~~gI~v~~~g~~~------------- 328 (356)
T 1fg7_A 283 LKEIPCVEQ-VFDS----------------ETNYILARFK-A---SSAVFKSLWDQGIILRDQNKQP------------- 328 (356)
T ss_dssp HHHSTTEEE-ECCC----------------SSSEEEEEET-T---HHHHHHHHHHTTEECEECTTST-------------
T ss_pred HHhCCCceE-ECCC----------------CCeEEEEECC-C---HHHHHHHHHHCCEEEEECCCCC-------------
Confidence 988765432 2332 4678899996 2 33455555555666665 4321
Q ss_pred CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 503 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 503 ~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
|. ++++|||++. ++.++.+.++|++
T Consensus 329 ---------~~-~~~iRis~~~---~~e~~~~~~~l~~ 353 (356)
T 1fg7_A 329 ---------SL-SGCLRITVGT---REESQRVIDALRA 353 (356)
T ss_dssp ---------TC-TTEEEEECCC---HHHHHHHHHHHHT
T ss_pred ---------CC-CCeEEEEeCC---HHHHHHHHHHHHh
Confidence 12 4689999984 3456666677664
No 40
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.95 E-value=9.4e-26 Score=236.46 Aligned_cols=285 Identities=14% Similarity=0.152 Sum_probs=209.4
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEG 287 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~ 287 (541)
..+..+++++.+++++|.++++++++|++|+.+++.+++++||+|+++.+.|+++... +...|.++..++..|+++
T Consensus 86 ~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~----~~~~g~~~~~v~~~d~~~ 161 (398)
T 3a2b_A 86 TLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDG----SRLSFSKVIKYGHNNMED 161 (398)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHH----HHHSSSEEEEECTTCHHH
T ss_pred CcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHH----HHHcCCceEEeCCCCHHH
Confidence 4578899999999999998899999999999999999999999999999999987643 445688999999889999
Q ss_pred HHHhccCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc----ccccc-c----CCcEEEECC
Q 009172 288 LEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-L----GADLVLHSA 355 (541)
Q Consensus 288 Le~ai~~~---~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~----~~~l~-~----gaDivv~S~ 355 (541)
|++++++. ++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ..... . ++|+++.|+
T Consensus 162 l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~ 241 (398)
T 3a2b_A 162 LRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTF 241 (398)
T ss_dssp HHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEES
T ss_pred HHHHHHhhccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecc
Confidence 99998762 589999999999999999999999999999999999999976532 11111 1 269999999
Q ss_pred ccccCCCCCceEEEEEeChHHHHHHHHHh--hhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCc
Q 009172 356 TKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 356 sK~lgg~g~v~gG~vv~~~~li~~l~~~~--~~~g~~~s~~~a~l~l~~l~tl---~~r~~~~~~na~~la~~L~~~p~v 430 (541)
||++++.| |++++++++++.++... .......++.....+...++.+ ....++..++++.+.+.|+++ ++
T Consensus 242 sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 316 (398)
T 3a2b_A 242 SKSLASLG----GFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH-GF 316 (398)
T ss_dssp SSTTCSSC----EEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred cccccCCC----cEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 99999654 89999999988887642 2233344554443333444433 345566667788888888875 32
Q ss_pred eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHh
Q 009172 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 510 (541)
Q Consensus 431 ~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~ 510 (541)
. + ++ +.|+++++.++. ......+.+.|...++.+..|..+.. +
T Consensus 317 ~-~-~~----------------~~g~~~~~~~~~-~~~~~~l~~~l~~~gi~v~~~~~~~~---~--------------- 359 (398)
T 3a2b_A 317 D-L-GA----------------TESPILPIFIRS-NEKTFWVTKMLQDDGVFVNPVVSPAV---P--------------- 359 (398)
T ss_dssp C-B-CS----------------CCSSEEEEECCC-HHHHHHHHHHHHHTTEECEEECTTTS---C---------------
T ss_pred C-c-CC----------------CCCCEEEEEcCC-HHHHHHHHHHHHHCCcEEEeeCCCCC---C---------------
Confidence 1 1 11 136789999864 23456677776555777665543211 0
Q ss_pred cCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 511 YGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 511 ~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
..++.||||++.. +.+.+++.|.+++++
T Consensus 360 --~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~ 391 (398)
T 3a2b_A 360 --AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQ 391 (398)
T ss_dssp --GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 0257899999963 344555555555543
No 41
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.95 E-value=3.9e-27 Score=243.68 Aligned_cols=289 Identities=14% Similarity=0.163 Sum_probs=203.2
Q ss_pred CCCCCCCchhHHHHHHH-HHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 202 FEYGRYGNPTTVVVEEK-MSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~-LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
+.++++..+...+++++ +++++|.+..+++++|++|+.+++.+++++||+|+++.++|+++... +...|+++.++
T Consensus 45 ~~~~~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v 120 (371)
T 2e7j_A 45 GRLDEIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVA----AERAGLNIALV 120 (371)
T ss_dssp --------CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH----HHHTTCEEEEE
T ss_pred ccchhhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHhCCCCEEEEccCcchHHHHH----HHHcCCeEEEe
Confidence 34556678889999999 99999988444445557999999999999999999999999987644 45568888888
Q ss_pred C--CC-----CHHHHHHhcc-----CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccC
Q 009172 281 D--PA-----DMEGLEAALN-----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLG 347 (541)
Q Consensus 281 d--~~-----dle~Le~ai~-----~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~g 347 (541)
+ .+ |+++|+++++ + ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++++.+.. ......+
T Consensus 121 ~~~~~~~~~~d~~~l~~~l~~~~~~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~ 199 (371)
T 2e7j_A 121 PKTDYPDYAITPENFAQTIEETKKRG-EVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIG 199 (371)
T ss_dssp CCCCTTTCCCCHHHHHHHHHHHTTTS-CEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHT
T ss_pred ecccCCCCCcCHHHHHHHHHhhcccC-CeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcC
Confidence 8 54 7999999997 5 599999999999999999999999999999999999999887543 3444568
Q ss_pred CcEEEECCccccCCCCCceEEEEEeChHHHHH-HHHHhh--hc-----CCCccHHHHHHHHHhHHHHH-HHHHHH--HHH
Q 009172 348 ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHH--VL-----GGALNPNAAYLIIRGMKTLH-LRVQQQ--NST 416 (541)
Q Consensus 348 aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~-l~~~~~--~~-----g~~~s~~~a~l~l~~l~tl~-~r~~~~--~~n 416 (541)
.|+++.|+||+++++. .+|++++++++++. ++.... .. .++.++...+.+...++.+. ...++. .++
T Consensus 200 ~di~~~s~sK~~~~~~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 277 (371)
T 2e7j_A 200 ADFIVGSGHKSMAASG--PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEK 277 (371)
T ss_dssp CSEEEEEHHHHSSCCS--SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred CCEEEecCCcCCCCCC--CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888765 46899998887776 654332 11 23344444444444555544 334455 678
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCc
Q 009172 417 ALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPA 496 (541)
Q Consensus 417 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa 496 (541)
++++.+.|+++ ++. +..|. .+.+++++|.++ ...++.+.|...++.+.. ..
T Consensus 278 ~~~l~~~L~~~-~~~-~~~~~--------------~~~~~~~~~~~~----~~~~~~~~l~~~gi~~~~-~~-------- 328 (371)
T 2e7j_A 278 ARRFAAEMEKL-GIK-QLGDN--------------PHNHDLMFFHAE----VLYEISKKAKGGRFFLYR-EL-------- 328 (371)
T ss_dssp HHHHHHHHHHT-TCE-EESSS--------------SCCSSEEEEECH----HHHHHHHHSSSGGGHHHH-HH--------
T ss_pred HHHHHHHHHHc-CcE-EecCC--------------CccCceEEEECC----CHHHHHHHHHHCCEEEEe-cc--------
Confidence 88888999886 443 22221 013568999885 456777787765544321 00
Q ss_pred ccccccCCHHHHHhc---CCCCCeEE-EEecCC-CHHHHHHHHHHHH
Q 009172 497 IMSYWDLSQSERLKY---GIMDNLVR-FSFGVE-DFEDLKADVLQAL 538 (541)
Q Consensus 497 ~~~~~~~~~~~~~~~---gi~~~~IR-lSvG~E-d~edli~dL~~AL 538 (541)
... |..++.|| |+++.. .+++.++.+.++|
T Consensus 329 ------------~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l 363 (371)
T 2e7j_A 329 ------------KSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAF 363 (371)
T ss_dssp ------------HHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHH
T ss_pred ------------ccccccCCCCCceEEEEeeccCCCHHHHHHHHHHH
Confidence 011 34468899 999975 4444444444444
No 42
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.95 E-value=6.2e-26 Score=235.59 Aligned_cols=293 Identities=13% Similarity=0.073 Sum_probs=206.4
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~--~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
|+....+..+++++.+++++|.+ + .+++++|++|+.+++.+++++||+|+++.++|++.. +...+...|+++..+
T Consensus 47 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 124 (386)
T 2dr1_A 47 RSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAFGKR--YKEVVESNGRKAVVL 124 (386)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCchhHH--HHHHHHHhCCceEEE
Confidence 43333678889999999999976 5 456677789999999999999999999999998731 223455678888887
Q ss_pred CC-----CCHHHHHHhccC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEE
Q 009172 281 DP-----ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLH 353 (541)
Q Consensus 281 d~-----~dle~Le~ai~~-~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~ 353 (541)
+. .|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.
T Consensus 125 ~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~ 204 (386)
T 2dr1_A 125 EYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFS 204 (386)
T ss_dssp ECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEE
T ss_pred ecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEE
Confidence 64 589999999942 2589999999999999999999999999999999999999876543 2334457899999
Q ss_pred CCccccCCCCCceEEEEEeChHHHHHHH----------------HHh--hhcCCCccHHHHHHHHHhHHH------HHHH
Q 009172 354 SATKFIGGHNDVLAGSISGSGKLVTQIR----------------NLH--HVLGGALNPNAAYLIIRGMKT------LHLR 409 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~li~~l~----------------~~~--~~~g~~~s~~~a~l~l~~l~t------l~~r 409 (541)
|+||+++++.+ +|++++++++++.++ ... .....+.++...+.+...++. +...
T Consensus 205 s~sK~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~ 282 (386)
T 2dr1_A 205 SSQKAFGVPPG--LAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKW 282 (386)
T ss_dssp ETTSTTCCCSS--CEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred eccccccCCCc--eEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999997642 589999998887762 121 122334555555444445543 3345
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009172 410 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 489 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~ 489 (541)
.++..++++.+.+.|+++ ++. +..|. + ...+++++|.++.+ ....++.+.|...++.+..|...
T Consensus 283 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~ 346 (386)
T 2dr1_A 283 LEMYEKRAKMVREGVREI-GLD-ILAEP-----G--------HESPTITAVLTPPG-IKGDEVYEAMRKRGFELAKGYGS 346 (386)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCC-BSSCT-----T--------CBCSSEEEEECCTT-CCHHHHHHHHHHTTEECEECCGG
T ss_pred HHHHHHHHHHHHHHHHHc-CCe-eCcCc-----c--------ccCCceEEEEcCCC-CCHHHHHHHHHHCCeEEecCccc
Confidence 666778888888999876 432 21110 0 01467899998732 12345566665447666655311
Q ss_pred cceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 490 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 490 sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
..++.||||++.. +.+++++.|.++++
T Consensus 347 -----------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 377 (386)
T 2dr1_A 347 -----------------------VKEKTFRIGHMGYMKFEDIQEMLDNLREVIN 377 (386)
T ss_dssp -----------------------GTTTEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------cCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 0257899999963 34455555555544
No 43
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.95 E-value=2.4e-26 Score=238.37 Aligned_cols=302 Identities=14% Similarity=0.120 Sum_probs=202.4
Q ss_pred CchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all----~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
..+...++++++++++|.+ .++++++|++|+.+++.++. ++||+|++++++|+++...+. .+...|+++++++
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~ 119 (382)
T 4eb5_A 41 AREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAK-FLQKQGFEVEYIP 119 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHH-HHTTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHH-HHHhCCcEEEEec
Confidence 3567899999999999975 56677778899999999987 899999999999998766553 3455789998887
Q ss_pred C-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECC
Q 009172 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSA 355 (541)
Q Consensus 282 ~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~ 355 (541)
. .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++|++ |+|++++.+.. .+....++|+++.|+
T Consensus 120 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~ 197 (382)
T 4eb5_A 120 VGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISS 197 (382)
T ss_dssp BCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEET
T ss_pred cCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeeh
Confidence 5 389999999987 599999999999999999999999999999999 99999874322 222234789999999
Q ss_pred ccccCCCCCceEEEEEeChHH-HHHHHH----HhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHh
Q 009172 356 TKFIGGHNDVLAGSISGSGKL-VTQIRN----LHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEILEA 426 (541)
Q Consensus 356 sK~lgg~g~v~gG~vv~~~~l-i~~l~~----~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~la~~L~~ 426 (541)
||++++.| .|+++.+++. +..+.. ......++.+....+.+...++. +....++..++++.+.+.|++
T Consensus 198 sK~~g~~g---~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (382)
T 4eb5_A 198 NDIYGPKG---VGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK 274 (382)
T ss_dssp GGGTCCSS---CEEEEEETTCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCc---eEEEEEccccccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99977655 3566665542 111100 01111233343333333333333 344556667788888888887
Q ss_pred CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHH
Q 009172 427 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQS 506 (541)
Q Consensus 427 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~ 506 (541)
+|++. +..|. . ...+++++|.+++. ....+.+.|...++.+..|..++... ..+..
T Consensus 275 ~~~~~-~~~~~-----~--------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~--------~~~~~ 330 (382)
T 4eb5_A 275 IEESY-LNGHP-----E--------KRLPNNVNVRFSYI--EGESIVLSLDMAGIQASTGSACSSKT--------LQPSH 330 (382)
T ss_dssp STTEE-ECSCS-----S--------SBCTTEEEEEETTS--CHHHHHHHHHHHTCBCBCCCGGGTSS--------CCCCH
T ss_pred CCCeE-EeCCc-----c--------cCCCCEEEEEeCCc--CHHHHHHHHHHCCEEEeccccccCCC--------CcccH
Confidence 76653 32221 0 01367899998741 23445555555577777775433210 00112
Q ss_pred HHHhcCCC----CCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 507 ERLKYGIM----DNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 507 ~~~~~gi~----~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
....+|++ ++.|||+++... .+.+++.|.++++
T Consensus 331 ~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~ 371 (382)
T 4eb5_A 331 VLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE 371 (382)
T ss_dssp HHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 33345553 579999999644 4444555555443
No 44
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.95 E-value=5.5e-26 Score=235.58 Aligned_cols=287 Identities=15% Similarity=0.092 Sum_probs=203.1
Q ss_pred CchhHHHHHHHHHHHhCCCc----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC
Q 009172 208 GNPTTVVVEEKMSALEGAES----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~----~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~ 283 (541)
..+..+++++++++++|.+. ++++++|++|+. ++.+++++||+|+++++.|++. .+...+...|+++.+++.+
T Consensus 33 ~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~~~~~~--~~~~~~~~~g~~~~~v~~~ 109 (384)
T 3zrp_A 33 FVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSLLKPNDKILVVSNGVFGD--RWEQIFKRYPVNVKVLRPS 109 (384)
T ss_dssp HHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGGCCTTCEEEEECSSHHHH--HHHHHHTTSSCEEEEECCS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhhcCCCCEEEEecCCcchH--HHHHHHHHcCCcEEEecCC
Confidence 35678899999999999754 677778889999 9999999999999999999763 2334556779999988753
Q ss_pred -----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCcc
Q 009172 284 -----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (541)
Q Consensus 284 -----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK 357 (541)
|+++++++++++++++|++++|+||||.+.|+++|.++|++||+++|+|++++.+.. ......++|+++.|+||
T Consensus 110 ~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K 189 (384)
T 3zrp_A 110 PGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQK 189 (384)
T ss_dssp TTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTS
T ss_pred CCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcc
Confidence 899999999874599999999999999999999999999999999999999875533 33345679999999999
Q ss_pred ccCCCCCceEEEEEeChHHHHHH-------------HHHhh---h----c---CCCccHHHHHHHHHhHHH-----HHHH
Q 009172 358 FIGGHNDVLAGSISGSGKLVTQI-------------RNLHH---V----L---GGALNPNAAYLIIRGMKT-----LHLR 409 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~~~li~~l-------------~~~~~---~----~---g~~~s~~~a~l~l~~l~t-----l~~r 409 (541)
+++++.+ .|++++++++++++ ..+.. . . .++.+......+...++. +...
T Consensus 190 ~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~ 267 (384)
T 3zrp_A 190 ALGSAAG--LGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENR 267 (384)
T ss_dssp TTCCCSS--EEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccCCCc--eEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 8875432 68899999887776 22221 1 0 023344333333333332 3445
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009172 410 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 489 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~ 489 (541)
.++..++++++.+.|+++ ++. +..|. +. ...+++++|.+++ .....+.+.|...++.+..|...
T Consensus 268 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~ 331 (384)
T 3zrp_A 268 IKRHTMVASAIRAGLEAL-GLE-IVARR----PE--------SYSNTVTGVILKV--ADPQKVLAGTVNEGVEFAPGVHP 331 (384)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCC-BSCSS----GG--------GBCSSEEEEECSS--SCHHHHHHHHHTTTCCCEECCCT
T ss_pred HHHHHHHHHHHHHHHHHC-CCe-EccCc----cc--------ccCccEEEEECCC--CCHHHHHHHHHHCCEEEecCCCC
Confidence 566677888888888876 432 21111 00 1246788999875 23455666666557666654310
Q ss_pred cceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 490 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 490 sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
. .+.|||+++.. +.+++++.|.++++
T Consensus 332 ----------------------~--~~~iRi~~~~~~~~e~i~~~~~~l~~~l~ 361 (384)
T 3zrp_A 332 ----------------------A--FKYFRIGHMGWVTPNDAIIAISVIERTLR 361 (384)
T ss_dssp ----------------------T--CCEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred ----------------------C--cCEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 0 17899999854 44555555555554
No 45
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.95 E-value=3.4e-26 Score=236.76 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=200.5
Q ss_pred CCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...+|+++||+++|. ++++++++|++|+.+++.+++++||+|+++.++|.++... +...|.++.+++
T Consensus 59 ~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~v~ 134 (360)
T 3hdo_A 59 LRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHPSYSYYGTL----AEVQGARVRTFG 134 (360)
T ss_dssp GGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCTHHHHH----HHHHTCEEEEEC
T ss_pred hhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCChHHHHHH----HHHCCCEEEEee
Confidence 4556667778999999999995 5788888889999999999999999999999999986643 445588888887
Q ss_pred CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccc----cccCCcEEEECCcc
Q 009172 282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA----LSLGADLVLHSATK 357 (541)
Q Consensus 282 ~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~----l~~gaDivv~S~sK 357 (541)
.++...+++.++..++++|++++|+||||.++|+++|.++|+++|+++|+|++|+....... ...+.++++.|+||
T Consensus 135 ~~~~~~~~~l~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK 214 (360)
T 3hdo_A 135 LTGDFRIAGFPERYEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSK 214 (360)
T ss_dssp BCTTSSBTTCCSSBCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTT
T ss_pred CCCCCCHHHHHhhcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchH
Confidence 54321222222222367999999999999999999999999999999999999875321111 12456799999999
Q ss_pred ccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Q 009172 358 FIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAHPKVKRVH 434 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~---tl~~r~~~~~~na~~la~~L~~~p~v~~V~ 434 (541)
.++.+| ...|++++++++++.++.....+ ..++..++.+...++ .+..+.++..++++.+.+.|+++ ++. +
T Consensus 215 ~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~- 288 (360)
T 3hdo_A 215 SYSLAG-MRIGLAIARPEVIAALDKIRDHY--NLDRLAQAACVAALRDQAYLSECCRRIRETREWFTTELRSI-GYD-V- 288 (360)
T ss_dssp TTSCTT-SCCEEEECCHHHHHHHHHHSCSC--CSCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E-
T ss_pred hhcCCc-cceeeEeeCHHHHHHHHHhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCE-E-
Confidence 998555 34788999999999888765443 345555555444443 35566677778888899999886 442 2
Q ss_pred CCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCC
Q 009172 435 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 514 (541)
Q Consensus 435 ~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~ 514 (541)
++. .|+++++.+++. ....+.+.|...++.++.|+. + -.
T Consensus 289 ~~~----------------~~~~~~~~~~~~--~~~~l~~~l~~~gi~v~~~~~------~-----------------~~ 327 (360)
T 3hdo_A 289 IPS----------------QGNYLFATPPDR--DGKRVYDGLYARKVLVRHFSD------P-----------------LL 327 (360)
T ss_dssp CCC----------------SSSEEEEECTTC--CHHHHHHHHHHTTEECBCCCS------T-----------------TT
T ss_pred cCC----------------CccEEEEECCCC--CHHHHHHHHHHCCEEEEECCC------C-----------------CC
Confidence 221 467888888742 234455555555777665432 0 12
Q ss_pred CCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 515 DNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 515 ~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
++.||||++. ++.++.|.++|+
T Consensus 328 ~~~iRis~~~---~~e~~~l~~al~ 349 (360)
T 3hdo_A 328 AHGMRISIGT---REEMEQTLAALK 349 (360)
T ss_dssp TTSEEEECCC---HHHHHHHHHHHH
T ss_pred CCEEEEEcCC---HHHHHHHHHHHH
Confidence 4789999993 334445555554
No 46
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.95 E-value=1.2e-25 Score=237.03 Aligned_cols=280 Identities=13% Similarity=0.126 Sum_probs=203.9
Q ss_pred hhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHH
Q 009172 210 PTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLE 289 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le 289 (541)
+..+++++++++++|.+..+++++|++|+..++.+++++||+|+++++.|+++...+ ...|.++..++..|+++|+
T Consensus 104 ~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~d~~~le 179 (409)
T 3kki_A 104 YDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGA----RYANAQAHPFMHNNCDHLR 179 (409)
T ss_dssp TTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHH----HHTTCEEEEECTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHhcCCCCEEEECCCcCHHHHHHH----HHcCCeEEEecCCCHHHHH
Confidence 556789999999999999999999999999999999999999999999998876433 3458888888888999999
Q ss_pred HhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-------c--ccccCCcEEEECCccccC
Q 009172 290 AALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-------K--ALSLGADLVLHSATKFIG 360 (541)
Q Consensus 290 ~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~-------~--~l~~gaDivv~S~sK~lg 360 (541)
++++++++++|++++|+||||.+.|+++|.++|++||++||+|++|+.+... . ....++|+++.|++|.++
T Consensus 180 ~~l~~~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~~ 259 (409)
T 3kki_A 180 MLIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFA 259 (409)
T ss_dssp HHHHHHCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC
T ss_pred HHHHhcCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhhC
Confidence 9997545899999999999999999999999999999999999998764321 0 112257899999999998
Q ss_pred CCCCceEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCceEEeC
Q 009172 361 GHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKVKRVHY 435 (541)
Q Consensus 361 g~g~v~gG~vv~~~~li~~l~~~~~--~~g~~~s~~~a~l~l~~l~tl---~~r~~~~~~na~~la~~L~~~p~v~~V~~ 435 (541)
+. +|++++++++++.++.... .++...++..+..+...++.+ ....++..++++++.+.|++.. +. .
T Consensus 260 ~~----gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g-~~---~ 331 (409)
T 3kki_A 260 YR----AGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG-LT---I 331 (409)
T ss_dssp SS----CEEEEESSSGGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT-CC---C
T ss_pred CC----ceEEEECHHHHHHHHHhCcCccccCCCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC-Cc---c
Confidence 76 4899999888877765322 244456666655555555544 3444556677888888888652 11 1
Q ss_pred CCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCC
Q 009172 436 PGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMD 515 (541)
Q Consensus 436 Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~ 515 (541)
+ +.++++++.++. ......+.+.|...++.+..+. .|.. ....
T Consensus 332 ~----------------~~~~~~~~~~~~-~~~~~~~~~~L~~~Gv~v~~~~------~~~~--------------~~~~ 374 (409)
T 3kki_A 332 R----------------SESQIIGLETGD-ERNTEKVRDYLESNGVFGSVFC------RPAT--------------SKNK 374 (409)
T ss_dssp C----------------CSSSEEEEEEES-HHHHHHHHHHHHHTTEECEEEC------TTSS--------------CTTC
T ss_pred C----------------CCCCEEEEEeCC-HHHHHHHHHHHHHCCceEeeeC------CCCc--------------CCCC
Confidence 1 246789999874 3445566666655565544321 1110 1135
Q ss_pred CeEEEEecCCCHHHHHHHHHHHH
Q 009172 516 NLVRFSFGVEDFEDLKADVLQAL 538 (541)
Q Consensus 516 ~~IRlSvG~Ed~edli~dL~~AL 538 (541)
+.|||+++...+++.++.+.++|
T Consensus 375 ~~iRi~~~~~~t~e~i~~~~~~l 397 (409)
T 3kki_A 375 NIIRLSLNSDVNDEQIAKIIEVC 397 (409)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHH
T ss_pred cEEEEEccCCCCHHHHHHHHHHH
Confidence 79999998654444444444433
No 47
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.95 E-value=1.1e-25 Score=234.13 Aligned_cols=291 Identities=14% Similarity=0.092 Sum_probs=209.9
Q ss_pred CCCc--hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 206 RYGN--PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 206 R~~~--p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
+|+. +...+++++|++++|.+ +++++++|++|+.+++.++ +++||+|+++.++|+++...+....+..|.++..+
T Consensus 53 ~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v 132 (390)
T 1elu_A 53 ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFF 132 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEE
Confidence 4444 77889999999999975 6788888999999999999 89999999999999997655544455568888888
Q ss_pred CC-------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHH----hCCCEEEEEcCCCCCCc-ccccccCC
Q 009172 281 DP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCH----KKGAIVCIDGTFATPLN-QKALSLGA 348 (541)
Q Consensus 281 d~-------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~----~~gillvvDea~a~~~~-~~~l~~ga 348 (541)
+. .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+ ++|+++|+|++|+.+.. ......+.
T Consensus 133 ~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~ 211 (390)
T 1elu_A 133 PVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEV 211 (390)
T ss_dssp CCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCC
T ss_pred cCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCC
Confidence 75 268999999987 5999999999999999999999999999 99999999999875432 22224578
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh----------------------hhcCCCccHHHHHHH---HHhH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH----------------------HVLGGALNPNAAYLI---IRGM 403 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~----------------------~~~g~~~s~~~a~l~---l~~l 403 (541)
|+++.|+||++.++.+ .|++++++++++.++... ....++.+......+ +..+
T Consensus 212 d~~~~s~~K~~~~~~g--~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l 289 (390)
T 1elu_A 212 DYYAFTGHKWFAGPAG--VGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH 289 (390)
T ss_dssp SEEEEESSSTTCCCTT--CEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH
T ss_pred CEEEccccccccCCCc--eEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHH
Confidence 9999999995544432 588888888776654311 111223344333322 3333
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009172 404 KT---LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 480 (541)
Q Consensus 404 ~t---l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ 480 (541)
+. +....++..++++++.+.|++++++. +..|. .+.|+++.|+++.+ ....++.+.|...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~g 353 (390)
T 1elu_A 290 QRQGTAEERYQAICQRSEFLWRGLNQLPHVH-CLATS--------------APQAGLVSFTVDSP-LGHRAIVQKLEEQR 353 (390)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEE-ESCSS--------------CCSSSEEEEEECSS-SCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcE-EecCc--------------cccccEEEEEcCCC-CCHHHHHHHHHHCC
Confidence 23 44566777788899999998877653 33221 12577899998532 12344555554446
Q ss_pred eeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhhC
Q 009172 481 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHAI 541 (541)
Q Consensus 481 iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~i 541 (541)
+.+..|. .++.||||++...+++.++.+.++|+++
T Consensus 354 i~v~~~~--------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~ 388 (390)
T 1elu_A 354 IYLRTIA--------------------------DPDCIRACCHYITDEEEINHLLARLADF 388 (390)
T ss_dssp EECEEET--------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred EEEEecC--------------------------CCCeEEEecccCCCHHHHHHHHHHHHhh
Confidence 5554331 2478999998877777788888887653
No 48
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.95 E-value=2.2e-26 Score=241.30 Aligned_cols=289 Identities=15% Similarity=0.179 Sum_probs=206.9
Q ss_pred CCchhHHHHHHHHHHHhCC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 207 YGNPTTVVVEEKMSALEGA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~-----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...+..+++++.+++++|. ++++++++|++|+..++.+++++||+|+++.++|.++... +...|.++..++
T Consensus 79 g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~ 154 (407)
T 3nra_A 79 GDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL----VEFFEGEMVPVQ 154 (407)
T ss_dssp CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTTCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHhCCCCCEEEEcCCcccchHHH----HHHcCCEEEEee
Confidence 3456788889999998886 5677777778999999999999999999999999986543 445677777765
Q ss_pred C-----------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-------
Q 009172 282 P-----------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN------- 340 (541)
Q Consensus 282 ~-----------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~------- 340 (541)
. .|+++|++++++ ++++|++++|+||||.++| +++|+++|++||+++|+|++|..+..
T Consensus 155 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~ 233 (407)
T 3nra_A 155 LDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTH 233 (407)
T ss_dssp BCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCC
T ss_pred cccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCC
Confidence 4 289999999987 5899999999999999999 88999999999999999999875321
Q ss_pred cccc---ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHH
Q 009172 341 QKAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQ 413 (541)
Q Consensus 341 ~~~l---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~ 413 (541)
...+ ..+.++++.|+||.++..| ...|++++++++++.++.....+....++..++++...++ .+..+.++.
T Consensus 234 ~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~ 312 (407)
T 3nra_A 234 LRAEAAVDAENVVTIMGPSKTESLSG-YRLGVAFGSRAIIARMEKLQAIVSLRAAGYSQAVLRGWFDEAPGWMEDRIARH 312 (407)
T ss_dssp GGGCTTSCGGGEEEEECSSSTTCCGG-GCCEEEEECHHHHHHHHHHHHHHTSSSCHHHHGGGGGTTCCCTTHHHHHHHHH
T ss_pred hhhcCcccCCcEEEEeCcccccCCCe-eeEEEEEcCHHHHHHHHHHHhhhccCCChHHHHHHHHHHhccchHHHHHHHHH
Confidence 1111 2446799999999998554 3468999999999988877666665556665555444442 356666777
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccce
Q 009172 414 NSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIV 492 (541)
Q Consensus 414 ~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~ 492 (541)
.++++.+.+.|++++.+.. ..| ..|.++++.++........+.+.|. ..++.+..|..+.
T Consensus 313 ~~~~~~l~~~L~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-- 373 (407)
T 3nra_A 313 QAIRDELLHVLRGCEGVFA-RTP----------------QAGSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFS-- 373 (407)
T ss_dssp HHHHHHHHHHHHTSTTCBC-CCC----------------SBSSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTC--
T ss_pred HHHHHHHHHHHhcCCCcee-ccC----------------CeeEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhC--
Confidence 7888899999988765531 111 1356778877641122344555552 2366666654321
Q ss_pred ecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 493 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 493 ~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
+ ...+.||||++.. +.+..++.|.++++
T Consensus 374 --~-----------------~~~~~iRis~~~~~~~i~~~~~~l~~~~~ 403 (407)
T 3nra_A 374 --P-----------------HTADSVRLNFSQDHEAAVAAARRIVTLVE 403 (407)
T ss_dssp --T-----------------TCTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred --C-----------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 1 1357999999962 23444555555554
No 49
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.94 E-value=2.3e-25 Score=232.04 Aligned_cols=280 Identities=14% Similarity=0.104 Sum_probs=201.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~g--~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
..+.|+....+..+++++.+++++| . ++++++++|++|+.+++.+++++||+|+++.++|.+.... +...|.
T Consensus 61 ~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~ 136 (391)
T 4dq6_A 61 EIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSV----VKNNNR 136 (391)
T ss_dssp CCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCCTHHHHH----HHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCHHHHHH----HHHcCC
Confidence 4567888778888999999999988 2 4678888888999999999999999999999999986643 345688
Q ss_pred EEEEeCCC---------CHHHHHHhccCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEEcCCCCCCcc--
Q 009172 276 TATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (541)
Q Consensus 276 ~v~~vd~~---------dle~Le~ai~~~~tklV~lesp~NPtG~v~---di~~Ia~la~~~gillvvDea~a~~~~~-- 341 (541)
++..++.+ |+++|++++++ +++|++++|+||||.++ ++++|.++|+++|+++|+|++|......
T Consensus 137 ~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~ 214 (391)
T 4dq6_A 137 ELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH 214 (391)
T ss_dssp EEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred eEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence 88887654 89999999976 89999999999999995 4778999999999999999998753221
Q ss_pred ---ccccc-----CCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcCC-CccHHHHHHHHHhHHH----HH
Q 009172 342 ---KALSL-----GADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKT----LH 407 (541)
Q Consensus 342 ---~~l~~-----gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g~-~~s~~~a~l~l~~l~t----l~ 407 (541)
..... +.++++.|+||.++.+| ...|++++++ ++.+.++......+. ..++.....+...++. +.
T Consensus 215 ~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 293 (391)
T 4dq6_A 215 KHIPMASISKEFEKNTITCMAPTKTFNIAG-LQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNNGESWLE 293 (391)
T ss_dssp CCCCGGGSCHHHHHTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHH
T ss_pred CccCHHHcCccccCcEEEEEechhhccCcc-cceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhchHHHHH
Confidence 11122 33489999999997555 3468888775 888888776544332 4555555544444443 45
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecC
Q 009172 408 LRVQQQNSTALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSF 485 (541)
Q Consensus 408 ~r~~~~~~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~ 485 (541)
.+.++..++++.+.+.|++ .|.+.. ..|. .+.+++++++........+.+.|... ++.+..
T Consensus 294 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~ 356 (391)
T 4dq6_A 294 SFLEYLESNIDFAIKYINENMPKLKV-RKPE----------------GTYLLWVDFSALGLSDEELESILVQKGKVALNQ 356 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEE-CCCS----------------BSSEEEEECGGGCCCHHHHHHHHHHTTCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEe-cCCC----------------ccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeC
Confidence 5566677888888888987 566542 2221 23456688863111234555655544 777766
Q ss_pred CCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC
Q 009172 486 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 486 G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
|..+.. ..++.+|||++.
T Consensus 357 g~~~~~---------------------~~~~~iRis~~~ 374 (391)
T 4dq6_A 357 GNSFGI---------------------GGSGYQRINLAC 374 (391)
T ss_dssp GGGGCT---------------------TCTTEEEEECCS
T ss_pred chhhCC---------------------CCCCeEEEEEcC
Confidence 543211 135899999995
No 50
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.94 E-value=1.6e-26 Score=240.45 Aligned_cols=303 Identities=14% Similarity=0.132 Sum_probs=213.9
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC--
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-- 283 (541)
+.++..+++|++||+++|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|.++.+++.+
T Consensus 33 ~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 108 (373)
T 3frk_A 33 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFIATALAV----SYTGAKPIFVEPDIR 108 (373)
T ss_dssp SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCTHHHHHH----HHHSCEEEEECEETT
T ss_pred cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEEecccc
Confidence 357889999999999999999999999999999999999 999999999999999976443 4458888888754
Q ss_pred ----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--CcEEEECCc-
Q 009172 284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT- 356 (541)
Q Consensus 284 ----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aDivv~S~s- 356 (541)
|++++++++++ ++++|+ |+||+|.+.|+++|.++|+++|+++|+|++++.+...+....| .|+++.|++
T Consensus 109 ~~~~d~~~l~~~l~~-~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~ 184 (373)
T 3frk_A 109 TYNIDPSLIESAITE-KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSLYKGMKVGSLGDAAGFSFYP 184 (373)
T ss_dssp TTEECGGGTGGGCCT-TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred ccCcCHHHHHHhcCC-CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCEECCEeccccccEEEEeCcC
Confidence 88999999987 599988 6889999999999999999999999999999876544444445 799999966
Q ss_pred -cccCCCCCceEEEEEeCh-HHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009172 357 -KFIGGHNDVLAGSISGSG-KLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAE 422 (541)
Q Consensus 357 -K~lgg~g~v~gG~vv~~~-~li~~l~~~~~~------------~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~ 422 (541)
|++++++ .+|++++++ ++.++++..... +...+++..+.+.+..++.++...++..++++++.+
T Consensus 185 ~K~l~~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (373)
T 3frk_A 185 AKNLGSLG--DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIA 262 (373)
T ss_dssp TSSSCCSS--SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred CCccCccc--eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998855 378888764 577777654431 112346666766666666677777777788888888
Q ss_pred HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccc-
Q 009172 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW- 501 (541)
Q Consensus 423 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~- 501 (541)
.|.+.+ + ..|..+.... ....++.+... + ...+.+.|...++.++.+....+.+.|......
T Consensus 263 ~l~~~~-~---~~~~~~~~~~---------~~~~~~~~~~~-~---~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~ 325 (373)
T 3frk_A 263 GINNPN-V---IIPVEADYAK---------HVWYTFVIRSE-K---RDELQKYLNNNGIGTLIHYPIPIHLQQAYKDLGF 325 (373)
T ss_dssp HCCCTT-E---ECCCCCTTEE---------CCCSSEEEEES-S---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGCC
T ss_pred HhccCc-e---EeccCCCCCc---------eeeEEEEEEeC-C---HHHHHHHHHHCCCCcccCcCCccccChHHHhcCC
Confidence 887665 3 2232211000 01122344443 2 334555555557777655422333333221110
Q ss_pred ---cCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 502 ---DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 502 ---~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++..+. +..+.|||+++...+++.++.+.++|++
T Consensus 326 ~~~~~~~~~~----~~~~~lrl~~~~~~t~~di~~~~~~l~~ 363 (373)
T 3frk_A 326 KTGNFPIAEK----IANEILSIPIWYGMKNEEIEYVIDKINA 363 (373)
T ss_dssp CTTSSHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHH----HHhCEEEccCCCCCCHHHHHHHHHHHHH
Confidence 1111111 1236899999999999999999998875
No 51
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.94 E-value=1.4e-25 Score=232.79 Aligned_cols=264 Identities=16% Similarity=0.218 Sum_probs=193.9
Q ss_pred hHHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~g------~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...+++++|+++++ . ++++++++|++|+.+++.+++++||+|++++++|+++... +...|.++..++
T Consensus 67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~- 141 (370)
T 2z61_A 67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNF----IRFLGAKPVFCD- 141 (370)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC-
T ss_pred CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHH----HHHcCCEEEEeC-
Confidence 46788888888874 2 4678888888999999999999999999999999986643 445688888888
Q ss_pred CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc----ccccc----cCCcEEEEC
Q 009172 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN----QKALS----LGADLVLHS 354 (541)
Q Consensus 283 ~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~----~~~l~----~gaDivv~S 354 (541)
.|+++|++++++ ++++|++++|+||||.++|++ |.++|+++|+++|+|++|..+.. ..... .+.|+++.|
T Consensus 142 ~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s 219 (370)
T 2z61_A 142 FTVESLEEALSD-KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILING 219 (370)
T ss_dssp SSHHHHHHHCCS-SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEE
T ss_pred CCHHHHHHhccc-CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEec
Confidence 789999999987 599999999999999999999 99999999999999999876432 11222 367999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALRMAEILEAHPK 429 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-----l~~r~~~~~~na~~la~~L~~~p~ 429 (541)
+||+++.+| ...|++++++++++.++..........++...+.+...++. +....++..++++.+.+.|+++ +
T Consensus 220 ~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g 297 (370)
T 2z61_A 220 FSKLYAMTG-WRIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDF-G 297 (370)
T ss_dssp STTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred ChhccCCcc-ceEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 999997555 35799999999999888766655555666666655555543 3334455667778888888875 3
Q ss_pred ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecCcccccccCCHHHH
Q 009172 430 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSER 508 (541)
Q Consensus 430 v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~ 508 (541)
+. +..| ..|.+++++++. ....+.+.|. ..++.+..|..+..
T Consensus 298 ~~-~~~~----------------~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~f~~----------------- 340 (370)
T 2z61_A 298 WE-VNNP----------------IGAYYVFPNIGE---DGREFAYKLLKEKFVALTPGIGFGS----------------- 340 (370)
T ss_dssp CB-CCCC----------------CBTTEECCBCSS---CHHHHHHHHHHHHCEECEEGGGGCG-----------------
T ss_pred Ce-ecCC----------------CcceEEEEecCC---CHHHHHHHHHHhCCEEEeCchhhCC-----------------
Confidence 32 1111 134567778764 2344555553 34666665543210
Q ss_pred HhcCCCCCeEEEEecC
Q 009172 509 LKYGIMDNLVRFSFGV 524 (541)
Q Consensus 509 ~~~gi~~~~IRlSvG~ 524 (541)
-.++.+|||++.
T Consensus 341 ----~~~~~~Ri~~~~ 352 (370)
T 2z61_A 341 ----KGKNYIRISYAN 352 (370)
T ss_dssp ----GGSSBEEEECCS
T ss_pred ----CCCCEEEEEEeC
Confidence 025789999994
No 52
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.94 E-value=3.8e-25 Score=229.65 Aligned_cols=280 Identities=16% Similarity=0.092 Sum_probs=202.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhC--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEG--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g--~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~ 276 (541)
.+.|+....+..+++++.+++++| . +..+++++|++|+.+++.+++++||+|+++.++|.+.... +...|.+
T Consensus 54 ~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~~~~~~~~~~----~~~~g~~ 129 (383)
T 3kax_A 54 IFGYTLPPENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPALSTSIQAFTKENESVLVQPPIYPPFFEM----VTTNNRQ 129 (383)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHCCTTCEEEECSSCCHHHHHH----HHHTTCE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhCCCCCEEEEcCCCcHHHHHH----HHHcCCE
Confidence 566777777888899999999888 2 4678888888999999999999999999999999986643 4456888
Q ss_pred EEEeCC--------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc----
Q 009172 277 ATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---- 341 (541)
Q Consensus 277 v~~vd~--------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~---- 341 (541)
+..++. .|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|......
T Consensus 130 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~ 208 (383)
T 3kax_A 130 LCVSPLQKQNDTYAIDFEHLEKQFQQ-GVKLMLLCSPHNPIGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTH 208 (383)
T ss_dssp EEECCCEEETTEEECCHHHHHHHHTT-TCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC
T ss_pred EEeccceecCCcEEEcHHHHHHHhCc-CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCc
Confidence 887764 489999999966 5999999999999999988 456666699999999999998753221
Q ss_pred -cccc-----cCCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCC-CccHHHHHHHHHhHHH----HHHH
Q 009172 342 -KALS-----LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMKT----LHLR 409 (541)
Q Consensus 342 -~~l~-----~gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~-~~s~~~a~l~l~~l~t----l~~r 409 (541)
.... .+.++++.|+||.++.+| ...|++++ ++++++.++......+. +.++...+.+...++. +..+
T Consensus 209 ~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 287 (383)
T 3kax_A 209 TPFASLSEELAARTITCMAPSKTFNIAG-LQASIIIIPNEKLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTECNDWLNEI 287 (383)
T ss_dssp CCGGGSCHHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred eeHhhcCccccCcEEEEEEChhhccCcc-hhheEEEeCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHhhHHHHHHH
Confidence 1111 255699999999998555 34688877 67888888876655443 5566655555444433 4555
Q ss_pred HHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCC
Q 009172 410 VQQQNSTALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGG 487 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~ 487 (541)
.++..++++.+.+.|++ .|.+. +..|. .+.++++.++.......++.+.|. ..++.++.|.
T Consensus 288 ~~~~~~~~~~l~~~l~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~ 350 (383)
T 3kax_A 288 RFYIEDNAKFACEYIKDHIPTLS-VMKPE----------------GSFLLWIDCSALNLSQDERTKLLEEKGKIIVEPGE 350 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCE-ECCCS----------------BSSEEEEECGGGCCCHHHHHHHHHHTSCEECEESG
T ss_pred HHHHHHHHHHHHHHHHhhCCCce-EecCC----------------ceEEEEEEccccCCCHHHHHHHHHhhCCEEeECch
Confidence 66677888889999987 56653 22221 234566888631113456666664 5677777665
Q ss_pred cccceecCcccccccCCHHHHHhcCCCCCeEEEEecC
Q 009172 488 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 488 ~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
.+.. ..++.+|||++.
T Consensus 351 ~~~~---------------------~~~~~iRi~~~~ 366 (383)
T 3kax_A 351 KYGL---------------------GGEEHIGINIGC 366 (383)
T ss_dssp GGCT---------------------TCTTEEEEECSS
T ss_pred hhcC---------------------CCCCeEEEEEcC
Confidence 4321 125899999995
No 53
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.94 E-value=4e-25 Score=227.90 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=205.4
Q ss_pred CCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
.+|+++...+++++|++++|. +..+++++|++|+.+++..+ |+|+++.++|.++... +...|.++.+++.
T Consensus 56 ~~y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~----d~vi~~~~~~~~~~~~----~~~~g~~~~~~~~ 127 (361)
T 3ftb_A 56 GVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF----EKILIIVPSYAEYEIN----AKKHGVSVVFSYL 127 (361)
T ss_dssp GSCCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC----SEEEEEESCCTHHHHH----HHHTTCEEEEEEC
T ss_pred cCCCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc----CcEEEecCChHHHHHH----HHHcCCeEEEeec
Confidence 455677789999999999985 45666777789999999877 9999999999986643 4456888887763
Q ss_pred -----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc---cccc----ccC
Q 009172 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---QKAL----SLG 347 (541)
Q Consensus 283 -----~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~---~~~l----~~g 347 (541)
.+++++++++++ +++|++++|+||||.++| +++|+++|++||+++|+|++|..... .... ..+
T Consensus 128 ~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 205 (361)
T 3ftb_A 128 DENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYS 205 (361)
T ss_dssp CTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCS
T ss_pred CcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCC
Confidence 367899999976 899999999999999997 55777788899999999999874332 1111 224
Q ss_pred CcEEEECCccccCCCCCceEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Q 009172 348 ADLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 348 aDivv~S~sK~lgg~g~v~gG~vv-~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~~~~~na~~la~~ 423 (541)
.++++.|+||.++.+|. ..|+++ +++++.+.++.....+ ..++...+.+...+ +.+..+.++..++++.+.+.
T Consensus 206 ~~i~~~s~sK~~~~~G~-r~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 282 (361)
T 3ftb_A 206 CLFIIRAMTKFFAMPGI-RFGYGITNNKEIAAKIKAKQNPW--NINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEE 282 (361)
T ss_dssp SEEEEEESSSTTSCGGG-CCEEEEESCHHHHHHHHTTSCTT--CSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeeChhhcCCCCc-ceeEEEeCCHHHHHHHHhhCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 55889999999985553 457776 8889988887655433 44555555555444 34556667777888999999
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccC
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 503 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~ 503 (541)
|+++|.+..+..+ .|+++++.+++ .....+.+.|...++.++.|..+.
T Consensus 283 l~~~~~~~~~~~~-----------------~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~------------- 330 (361)
T 3ftb_A 283 LNKIGFIKRVFSP-----------------HANFVLCRLEN--ISGEKLYDSLLKEDIVIRRCCNFI------------- 330 (361)
T ss_dssp HHHSSSEEEEECC-----------------SSSEEEEEESS--SCHHHHHHHHHTTTEECEECTTST-------------
T ss_pred HHhCCCCceecCC-----------------CCeEEEEEcCC--CCHHHHHHHHHHCCeEEeeCccCC-------------
Confidence 9988776423322 46788999975 234456666655577777664321
Q ss_pred CHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHhh
Q 009172 504 SQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALHA 540 (541)
Q Consensus 504 ~~~~~~~~gi~~~~IRlSvG~Ed-~edli~dL~~AL~~ 540 (541)
+..++.||||++.++ .+++++.|++.++.
T Consensus 331 --------~~~~~~iRis~~~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 331 --------GLDDSFVRFAIKDEKKNTKFLRALKGVENN 360 (361)
T ss_dssp --------TCCTTEEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred --------CCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 124689999999643 46677777766654
No 54
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.94 E-value=8e-26 Score=236.16 Aligned_cols=308 Identities=15% Similarity=0.137 Sum_probs=214.3
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
|+++..+...+||++|++++|.++.++++||++|+.+++.++ +++||+|+++.++|+++... +...|+++++++.
T Consensus 32 ~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~~~~gd~Vi~~~~~~~~~~~~----~~~~g~~~~~v~~ 107 (388)
T 1b9h_A 32 WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMGVGPGTEVIVPAFTFISSSQA----AQRLGAVTVPVDV 107 (388)
T ss_dssp CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECB
T ss_pred eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEec
Confidence 455677889999999999999988999999999999999999 89999999999999997643 3456888888764
Q ss_pred ------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc---cccccCCcEEEE
Q 009172 283 ------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ---KALSLGADLVLH 353 (541)
Q Consensus 283 ------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~---~~l~~gaDivv~ 353 (541)
.|+++|++++++ ++++|+ |+||+|.+.|+++|.++|+++|++||+|++++.+... ....++ |+++.
T Consensus 108 ~~~~~~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~-~i~~~ 182 (388)
T 1b9h_A 108 DAATYNLDPEAVAAAVTP-RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGELD-SIATF 182 (388)
T ss_dssp CTTTCCBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGSS-SCEEE
T ss_pred CCCcCCCCHHHHHHhcCc-CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCccCCeeccccc-ceEEE
Confidence 279999999987 589887 8999999999999999999999999999999865432 122333 67777
Q ss_pred CCc--cccCCCCCceEEEEEeChH-H--HHHHHHHhhh-------------cCC--CccHHHHHHHHHhHHHHHHHHHHH
Q 009172 354 SAT--KFIGGHNDVLAGSISGSGK-L--VTQIRNLHHV-------------LGG--ALNPNAAYLIIRGMKTLHLRVQQQ 413 (541)
Q Consensus 354 S~s--K~lgg~g~v~gG~vv~~~~-l--i~~l~~~~~~-------------~g~--~~s~~~a~l~l~~l~tl~~r~~~~ 413 (541)
|++ |+++|+ .+|+++++++ + +++++..... .|. .+++..++++...++.+..+.++.
T Consensus 183 S~s~~K~l~g~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~l~~~~~~~ 259 (388)
T 1b9h_A 183 SFQNGKLMTAG---EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLDEQIAVR 259 (388)
T ss_dssp ECCTTSSSCSS---SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHHHHHHHH
T ss_pred EccCCCcccCC---CeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 766 777664 3788888775 5 5665543221 022 256666666667777777788888
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccce
Q 009172 414 NSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIV 492 (541)
Q Consensus 414 ~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-~~~~~~~l~~L~~~~iavS~G~~~sl~ 492 (541)
.++++.+.+.|+++|++. +..+.-... ...+++++|.+++. ......+.+.|...++.++.+.. .+.
T Consensus 260 ~~~~~~l~~~L~~~~~~~-~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~-~~~ 327 (388)
T 1b9h_A 260 DERWTLLSRLLGAIDGVV-PQGGDVRAD----------RNSHYMAMFRIPGLTEERRNALVDRLVEAGLPAFAAFR-AIY 327 (388)
T ss_dssp HHHHHHHHHHHHTSTTCE-ECCCCTTCC----------BCCCSEEEEECTTCCHHHHHHHHHHHHHTTCCEEECCC-CGG
T ss_pred HHHHHHHHHHhccCCCcc-ccCCCcCCC----------ccceEEEEEEeCCcCcccHHHHHHHHHHCCCCcccccC-ccc
Confidence 889999999999887764 222110000 11467899999752 23456677777656777765432 111
Q ss_pred ecCcccccc-----------cCCHHHHHhcCCCCCeEEEEecCCC-HHHHHHHHHHHHh
Q 009172 493 DQPAIMSYW-----------DLSQSERLKYGIMDNLVRFSFGVED-FEDLKADVLQALH 539 (541)
Q Consensus 493 ~~pa~~~~~-----------~~~~~~~~~~gi~~~~IRlSvG~Ed-~edli~dL~~AL~ 539 (541)
..|...... .++...+ +..+.|||+++... +++.++.+.++|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~l~~~~~~~t~edi~~~~~~l~ 382 (388)
T 1b9h_A 328 RTDAFWELGAPDESVDAIARRCPNTDA----ISSDCVWLHHRVLLAGEPELHATAEIIA 382 (388)
T ss_dssp GSHHHHHSSCCSSCHHHHHHTCHHHHH----HHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred cChHhHhcCCCcccccccccCCHHHHH----HHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence 111000000 0111111 12357999998766 5665666665554
No 55
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.94 E-value=7.7e-25 Score=229.05 Aligned_cols=271 Identities=14% Similarity=0.142 Sum_probs=188.2
Q ss_pred hHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...+|++++++++ |. ++.+++++|++|+.+++.+++++||+|+++.|+|.+.... ++..|.++..++.
T Consensus 69 g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~ 144 (385)
T 1b5p_A 69 GIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEM----VRFAGGVVVEVET 144 (385)
T ss_dssp CCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHH----HHHcCCEEEEeec
Confidence 3567888888776 32 3566666777999999999999999999999999876543 4456888777754
Q ss_pred -------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc----ccccc--
Q 009172 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALSL-- 346 (541)
Q Consensus 283 -------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~----~~l~~-- 346 (541)
.|+++|++++++ ++++|++++|+||||.+++ +++|+++|+++|++||+|++|+..... ....+
T Consensus 145 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 223 (385)
T 1b5p_A 145 LPEEGFVPDPERVRRAITP-RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP 223 (385)
T ss_dssp CGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT
T ss_pred CcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC
Confidence 378999999987 5999999999999999987 889999999999999999998764321 11222
Q ss_pred CCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-------HHHHHHHHHHHHHHH
Q 009172 347 GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-------TLHLRVQQQNSTALR 419 (541)
Q Consensus 347 gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~-------tl~~r~~~~~~na~~ 419 (541)
+.++++.|+||.++.+| ...|++++++++++.++..........+....+++...++ .+....++..++++.
T Consensus 224 ~~~i~~~s~SK~~~~~G-~RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 302 (385)
T 1b5p_A 224 EHTLTVNGAAKAFAMTG-WRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDL 302 (385)
T ss_dssp TTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 56899999999998665 3478999999998888876554433445544444433332 234444556677778
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 499 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~ 499 (541)
+.+.|+++ ++. +..| ..|.++++.++.......++.+.|...++.+..|..+
T Consensus 303 l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f---------- 354 (385)
T 1b5p_A 303 LLEGLTAL-GLK-AVRP----------------SGAFYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDF---------- 354 (385)
T ss_dssp HHHHHHHH-TCC-BCCC----------------SBTTEEEEECTTTCSSHHHHHHHHHHTTEECEESGGG----------
T ss_pred HHHHHHHC-CCe-ecCC----------------CeeEEEEEecCCCCCCHHHHHHHHHHCCeEEeccccc----------
Confidence 88888765 332 1111 1344677777520012345555555557776665432
Q ss_pred cccCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009172 500 YWDLSQSERLKYGIMDNLVRFSFGVEDFED 529 (541)
Q Consensus 500 ~~~~~~~~~~~~gi~~~~IRlSvG~Ed~ed 529 (541)
+. ++.||||++. +.++
T Consensus 355 ------------~~-~~~iRis~~~-~~~~ 370 (385)
T 1b5p_A 355 ------------AA-FGHVRLSYAT-SEEN 370 (385)
T ss_dssp ------------TC-TTEEEEECCS-CHHH
T ss_pred ------------CC-CCeEEEEecC-CHHH
Confidence 11 4789999993 3343
No 56
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.94 E-value=4.2e-26 Score=236.63 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=208.3
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
.++...+||++|++++|.++.++++||++|+.+++.++ +++||+|+++.++|+++... +...|+++.+++.+
T Consensus 36 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~~~~gd~v~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~ 111 (374)
T 3uwc_A 36 LGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNIGAGDEVITCANTFIASVGA----IVQAGATPVLVDSENGY 111 (374)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTS
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCC
Confidence 57889999999999999999999999999999999999 99999999999999987643 45568899888764
Q ss_pred --CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--CcEEEECCc--c
Q 009172 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT--K 357 (541)
Q Consensus 284 --dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aDivv~S~s--K 357 (541)
|++++++++++ ++++|+ |+||||.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|+| |
T Consensus 112 ~~d~~~l~~~~~~-~~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~~~~~~~~~~d~~~~s~~~~K 187 (374)
T 3uwc_A 112 VIDPEKIEAAITD-KTKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRINDKFVGSWGQFACFSLHPLK 187 (374)
T ss_dssp SBCGGGTGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECSSSS
T ss_pred CcCHHHHHHhCCC-CceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCceeCCeeccccccEEEEeCCCCC
Confidence 89999999987 589888 8999999999999999999999999999998875433333333 799999977 9
Q ss_pred ccCCCCCceEEEEEeC-hHHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009172 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~-~~li~~l~~~~~~------------~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L 424 (541)
++++++. +|+++.+ +++.+.++..... ....+.+..+.+....++.+....++..++++.+.+.|
T Consensus 188 ~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l 265 (374)
T 3uwc_A 188 NLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSF 265 (374)
T ss_dssp SSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHT
T ss_pred cCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998663 7887765 4677777654421 11224566666666566666667777778888888888
Q ss_pred HhCCC-ceEEeCCCCCCCchhhhHhhhcCCccc--EEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccc
Q 009172 425 EAHPK-VKRVHYPGLKSHPEHHIATQQMTGFGG--VVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 501 (541)
Q Consensus 425 ~~~p~-v~~V~~Pgl~s~p~~~l~~~~~~g~g~--~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~ 501 (541)
.+.+. +. .|..+.. +... .+.+... + ...+.+.|...++.++.|....+.+.|......
T Consensus 266 ~~~~~~~~---~~~~~~~-----------~~~~~~~~~~~~~-~---~~~l~~~L~~~gi~v~~~~~~~~~~~~~~~~~~ 327 (374)
T 3uwc_A 266 VDLSEFID---VPVRREG-----------VYHVFHIYVLRVK-Y---RDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLG 327 (374)
T ss_dssp GGGTTTEE---CCCCCTT-----------EECCCSSEEEEET-T---HHHHHHHHHHTTBCCBCSCSSCGGGSGGGGGGC
T ss_pred ccCCCeEE---eccCCCC-----------CceeeEEEEEEcC-C---HHHHHHHHHHCCCccccCCCCccccChhhhhcC
Confidence 87665 42 2221110 0111 2334433 2 334555555456777766433332333221100
Q ss_pred ----cCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 502 ----DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 502 ----~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.++... .+..+.|||+++...+++.++.+.++|+
T Consensus 328 ~~~~~~~~~~----~~~~~~lrl~~~~~~t~edi~~~~~~l~ 365 (374)
T 3uwc_A 328 YQQGDFPMAE----KHGEAVITLPAHPYLTEEEINYIIKKVR 365 (374)
T ss_dssp CCTTSCHHHH----HHHHHEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CccCCCccHH----HHHhCEEEccCCCCCCHHHHHHHHHHHH
Confidence 111111 1123689999998766666666655554
No 57
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.94 E-value=1.2e-25 Score=233.06 Aligned_cols=302 Identities=15% Similarity=0.097 Sum_probs=203.9
Q ss_pred CchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc----cCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 208 GNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all----~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
..+...+++++|++++|.+ .++++++|++|+.+++.++. ++||+|+++.++|++....+. .+...|.++..++
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~-~~~~~g~~~~~v~ 120 (384)
T 1eg5_A 42 ANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMK-YLSMKGFKVKYVP 120 (384)
T ss_dssp HHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHH-HHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccCCCCEEEECCCCchHHHHHHH-HHHhcCCEEEEEc
Confidence 3456789999999999975 67788888999999999987 799999999999998765553 3355688888887
Q ss_pred C-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC--CEEEEEcCCCCCC-cccccccCCcEEEE
Q 009172 282 P-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG--AIVCIDGTFATPL-NQKALSLGADLVLH 353 (541)
Q Consensus 282 ~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g--illvvDea~a~~~-~~~~l~~gaDivv~ 353 (541)
. .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++| +++|+|++++.+. .......+.|+++.
T Consensus 121 ~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~ 199 (384)
T 1eg5_A 121 VDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASF 199 (384)
T ss_dssp BCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEE
T ss_pred cCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEe
Confidence 5 379999999987 5999999999999999999999999999999 9999999976322 12222347899999
Q ss_pred CCccccCCCCCceEEEEEeChHH--HHHHHHH---hhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q 009172 354 SATKFIGGHNDVLAGSISGSGKL--VTQIRNL---HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~l--i~~l~~~---~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~la~~L 424 (541)
|+||+++++| .|++++++++ ...+... ........+....+.+...++. +....++..++++.+.+.|
T Consensus 200 s~sK~~g~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L 276 (384)
T 1eg5_A 200 SAHKFHGPKG---VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL 276 (384)
T ss_dssp EGGGGTSCTT---CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHhcCCCc---eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 9999988766 4888888765 2211110 0112234455544444444443 3445566677888888888
Q ss_pred HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccce-ecCcccccccC
Q 009172 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV-DQPAIMSYWDL 503 (541)
Q Consensus 425 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~-~~pa~~~~~~~ 503 (541)
++ +++. +..|. . .+.+.+++|.+++. ....+.+.|...++.+..|..+... ..|
T Consensus 277 ~~-~g~~-~~~~~-----~--------~~~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~~~~~~~-------- 331 (384)
T 1eg5_A 277 MN-LGAH-IITPL-----E--------ISLPNTLSVSFPNI--RGSTLQNLLSGYGIYVSTSSACTSKDERL-------- 331 (384)
T ss_dssp HT-TTCE-ECSCT-----T--------SBCTTEEEEECTTC--CHHHHHHHHHHTTEECBC-------------------
T ss_pred CC-CCeE-EeCCc-----c--------cCCCCEEEEEeCCC--CHHHHHHHHhhCCeEEeccccccCCCCcc--------
Confidence 87 4543 32221 0 11356788888642 2345566665567888776543211 001
Q ss_pred CHHHHHhcCCC----CCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 504 SQSERLKYGIM----DNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 504 ~~~~~~~~gi~----~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
.......|++ .+.|||+++.. +.+.+++.|.+++++
T Consensus 332 -~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 375 (384)
T 1eg5_A 332 -RHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (384)
T ss_dssp --CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1122334543 47999999953 445566666665553
No 58
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.94 E-value=2.9e-25 Score=230.12 Aligned_cols=282 Identities=16% Similarity=0.150 Sum_probs=201.1
Q ss_pred CCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC
Q 009172 206 RYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~ 283 (541)
+|+++...+++++|++++|.+ ..+++++|++++.+++..+ +||+|++..++|++.... +...|.++..++.+
T Consensus 55 ~y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~--~gd~vl~~~p~y~~~~~~----~~~~g~~~~~v~~~ 128 (364)
T 1lc5_A 55 RYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRA----LAQSGCEIRRWSLR 128 (364)
T ss_dssp SCCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH--CCSEEEEEESCCTHHHHH----HHHTTCEEEEEECC
T ss_pred cCCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc--CCCeEEEeCCCcHHHHHH----HHHcCCeEEEEeCC
Confidence 445566789999999999864 5677777789999999988 789999999999986543 34468888777643
Q ss_pred C------HHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----ccc-cccCC
Q 009172 284 D------MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKA-LSLGA 348 (541)
Q Consensus 284 d------le~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~~~-l~~ga 348 (541)
+ ++++.+.+++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..+.. ... ...+.
T Consensus 129 ~~~~~~~l~~~~~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 207 (364)
T 1lc5_A 129 EADGWQLTDAILEALTP-DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPH 207 (364)
T ss_dssp GGGTTCCCTTHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTT
T ss_pred cccccchhHHHHHhccC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCC
Confidence 2 3556666655 5899999999999999999 88999999999999999999875431 111 12467
Q ss_pred cEEEECCccccCCCCCceEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv-~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t---l~~r~~~~~~na~~la~~L 424 (541)
++++.|+||+++.+| ...|+++ +++++++.++..... ...++..++.+...++. +....++..++++.+.+.|
T Consensus 208 ~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L 284 (364)
T 1lc5_A 208 IWVLRSLTKFYAIPG-LRLGYLVNSDDAAMARMRRQQMP--WSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQAL 284 (364)
T ss_dssp EEEEEESTTTTTCTT-TCCEEEECCCHHHHHHHHHHSCT--TCSCHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhcCCc-cceEEEEECCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998655 3468888 999999888776543 34566666666666643 4445556667788888999
Q ss_pred HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCC
Q 009172 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS 504 (541)
Q Consensus 425 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~ 504 (541)
+++|++. + +|. .|++++++++++ ...+.+.|...++.+..|..+.
T Consensus 285 ~~~~~~~-~-~~~----------------~g~~~~~~~~~~---~~~l~~~l~~~gi~v~~g~~~~-------------- 329 (364)
T 1lc5_A 285 CQLPLLT-V-YPG----------------RANYLLLRCERE---DIDLQRRLLTQRILIRSCANYP-------------- 329 (364)
T ss_dssp HTSTTEE-E-CCC----------------SSSEEEEEESCT---TCCHHHHHHTTTEECEECTTST--------------
T ss_pred hcCCCCE-E-CCC----------------CCeEEEEECCCc---HHHHHHHHHHCCcEEeeCcccC--------------
Confidence 8877653 2 221 467888988742 2345555555577776654321
Q ss_pred HHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009172 505 QSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQALH 539 (541)
Q Consensus 505 ~~~~~~~gi~~~~IRlSvG~E-d~edli~dL~~AL~ 539 (541)
+..+++||||++.+ +.+.+++.|++.++
T Consensus 330 -------~~~~~~iRis~~~~~~~~~l~~~l~~~~~ 358 (364)
T 1lc5_A 330 -------GLDSRYYRVAIRSAAQNERLLAALRNVLT 358 (364)
T ss_dssp -------TCCTTEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred -------CCCCCEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 12357999999853 33556666665544
No 59
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.94 E-value=3.5e-25 Score=230.30 Aligned_cols=285 Identities=15% Similarity=0.116 Sum_probs=199.2
Q ss_pred CCCc-hhHHHHHHHHHHHh----CCC-----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 206 RYGN-PTTVVVEEKMSALE----GAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 206 R~~~-p~~~~Le~~LA~l~----g~~-----~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
+|+. +...+|++++|+++ |.+ +.+++++|++|+.+++.+++++||+|+++.++|++.... +...|.
T Consensus 58 ~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~----~~~~g~ 133 (376)
T 2dou_A 58 GYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGA----ARVASL 133 (376)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHH----HHHcCC
Confidence 4454 46789999999987 753 566777778999999999999999999999999986643 344688
Q ss_pred EEEEeCC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----ccc
Q 009172 276 TATVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKA 343 (541)
Q Consensus 276 ~v~~vd~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~ 343 (541)
++..++. .|++++++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..+.. ...
T Consensus 134 ~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~ 212 (376)
T 2dou_A 134 RTFLIPLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSP 212 (376)
T ss_dssp EEEEECBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCG
T ss_pred EEEEeeCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCh
Confidence 8887764 367888888875 5999999999999999987 66888999999999999999875421 112
Q ss_pred cc----cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHH
Q 009172 344 LS----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNS 415 (541)
Q Consensus 344 l~----~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~ 415 (541)
.. .+.++++.|+||.++.+| ...|++++++++++.++.....++...++...+.+...++. +....++..+
T Consensus 213 ~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 291 (376)
T 2dou_A 213 LALPGAKERVVELFSLSKSYNLAG-FRLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKEVVRGYARVYRE 291 (376)
T ss_dssp GGSTTGGGTEEEEEEHHHHHTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hhcCCCCCcEEEEecchhhcCChh-heeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22 256799999999998555 34688999999999888766655545566655555444432 3444555667
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecC
Q 009172 416 TALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 416 na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~p 495 (541)
+++.+.+.|+++ + .+..| ..|.+++++++.+ .....+.+.|...++.+..|..+..
T Consensus 292 ~~~~l~~~L~~~--~-~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~---- 347 (376)
T 2dou_A 292 RALGMAEALKGV--L-SLLPP----------------RATMYLWGRLPEG-VDDLEFGLRLVERGVALAPGRGFGP---- 347 (376)
T ss_dssp HHHHHHHHHTTT--S-EECCC----------------CBSSEEEEECCTT-CCHHHHHHHHHHTTEECEEGGGGCG----
T ss_pred HHHHHHHHHHHh--c-CccCC----------------CeeEEEEEECCCC-CCHHHHHHHHHHCCEEEcCchhhCC----
Confidence 778888888775 3 22212 1355788998642 1234455555444766665543210
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
..++.||||++. +.+ .++.+.+.|.
T Consensus 348 -----------------~~~~~~Ris~~~-~~~-~i~~~l~~l~ 372 (376)
T 2dou_A 348 -----------------GGKGFVRIALVR-PLE-ELLEAAKRIR 372 (376)
T ss_dssp -----------------GGTTEEEEECCS-CHH-HHHHHHHHHH
T ss_pred -----------------CCCCeEEEEecC-CHH-HHHHHHHHHH
Confidence 025789999986 333 3333334443
No 60
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.94 E-value=2.6e-25 Score=233.26 Aligned_cols=304 Identities=15% Similarity=0.155 Sum_probs=220.9
Q ss_pred chhHHHHHHHH-HHHhC-CCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC--
Q 009172 209 NPTTVVVEEKM-SALEG-AESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (541)
Q Consensus 209 ~p~~~~Le~~L-A~l~g-~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-- 283 (541)
.|...+||+++ |+++| .+++++++||++|+.+++.++ +++||+||++.++|.++... +...|+++++++.+
T Consensus 35 ~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~~~~Gd~Vi~~~~~~~~~~~~----~~~~G~~~~~v~~~~~ 110 (377)
T 3ju7_A 35 GPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKKRKKGKYALMPSFTFPATPLA----AIWCGLEPYFIDISID 110 (377)
T ss_dssp CHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHSCTTCCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHH----HHHcCCEEEEEecCCc
Confidence 58899999999 99999 788999999999999999998 89999999999999987644 34568999888743
Q ss_pred ----CHHHHHHhc-cCCC--eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCccccccc---CCcEEEE
Q 009172 284 ----DMEGLEAAL-NNNN--VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSL---GADLVLH 353 (541)
Q Consensus 284 ----dle~Le~ai-~~~~--tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~---gaDivv~ 353 (541)
|++++++++ ++ + ||+|+ |+||+|.+.|+++|.++|+ +|++||+|++++.+........ ..|+.++
T Consensus 111 ~~~~d~~~l~~~i~~~-~~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~~~~~g~~~~d~~~~ 185 (377)
T 3ju7_A 111 DWYMDKTVLWDKIEEL-KEEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNGGMHYGQDFSGMIIY 185 (377)
T ss_dssp TCSBCHHHHHHHHHHH-GGGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEETTEETTTTCSSEEEE
T ss_pred cCCcCHHHHHHHHhcC-CCCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeECCEeccCCCCcEEEE
Confidence 899999988 44 4 89887 6889999999999999999 9999999999876544333333 2688888
Q ss_pred CC--ccccCCCCCceEEEEEe-ChHHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009172 354 SA--TKFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418 (541)
Q Consensus 354 S~--sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~------------~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~ 418 (541)
|+ +|++++ + .||+++. ++++.++++..+.. ++..++++.+++++..++++..+++++.++++
T Consensus 186 S~~~~K~l~~-g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l~~~~~~~~~~~~ 262 (377)
T 3ju7_A 186 SFHATKPFGI-G--EGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKWDDKLKERTRISE 262 (377)
T ss_dssp ECBTTSSSCC-B--SCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ECCCCCcCCC-C--CcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 699997 4 3677776 56777887765541 23457788898888999999999999999999
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~ 498 (541)
++.+.|++++.+.....|.-..+. ...++.+.+++. ...+.+++.|+..+|.++.+....+..+|...
T Consensus 263 ~~~~~L~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~ 330 (377)
T 3ju7_A 263 WYKQLLQSNGLMKKGWQLQKTEAV-----------IQQFMPILCPEE-VRNKQVIEDLKKQKIEARLYFSPSCHQQVLFR 330 (377)
T ss_dssp HHHHHHHHTTTTTTTCBCCCCSCB-----------CCSSEEEECCTT-SCHHHHHHHHHTTTBCCBCTTSSCGGGSGGGT
T ss_pred HHHHHhcCCCCccccccCCCCCcc-----------eEEEEEEEeCCh-hhHHHHHHHHHHCCCceecccCCccccchhhh
Confidence 999999998754211112111111 112345555532 12456777787778888766422222233322
Q ss_pred cc--ccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 499 SY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 499 ~~--~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.| ..++..+. +..+.|||+++...+++.++.+.++|.+
T Consensus 331 ~~~~~~~p~~~~----~~~~~l~lp~~~~~t~~di~~v~~~l~~ 370 (377)
T 3ju7_A 331 NYKSTDLTRTNK----IAKRIVSLPLWEGMTKEIVEQIVICLGQ 370 (377)
T ss_dssp TSCBSCCHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHTC
T ss_pred cCCCCCCHHHHH----HHhCEEECCCCCCCCHHHHHHHHHHHHH
Confidence 22 12222221 2356899999988777777777777754
No 61
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.94 E-value=3.5e-25 Score=230.16 Aligned_cols=302 Identities=17% Similarity=0.204 Sum_probs=218.3
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
.++...++|+++|+++|.+++++++||++|+.+++.++ +++||+|+++.++|.++... +...|.++++++.+
T Consensus 33 ~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~~~~~~----~~~~G~~~~~~~~~~~~ 108 (367)
T 3nyt_A 33 LGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALGVGPGDEVITPGFTYVATAET----VALLGAKPVYVDIDPRT 108 (367)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHcCCEEEEEecCCcc
Confidence 57889999999999999999999999999999999999 89999999999999987644 34568888888643
Q ss_pred ---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCC--cEEEECC--c
Q 009172 284 ---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVLHSA--T 356 (541)
Q Consensus 284 ---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~ga--Divv~S~--s 356 (541)
|++++++++++ ++++|+ |+||+|.+.|+++|.++|+++|++||+|++++.+........+. |+++.|+ +
T Consensus 109 ~~~d~~~l~~~i~~-~~~~v~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~Sf~~~ 184 (367)
T 3nyt_A 109 YNLDPQLLEAAITP-RTKAII---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGASYKGKRSCNLSTVACTSFFPS 184 (367)
T ss_dssp CSBCGGGTGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTEETTSSSSEEEEECCTT
T ss_pred CCcCHHHHHHhcCc-CCcEEE---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCeECCeeccCCCCEEEEECCCC
Confidence 78999999987 599888 78999999999999999999999999999988655443333344 9999996 8
Q ss_pred cccCCCCCceEEEEEe-ChHHHHHHHHHhhh------------cCCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISG-SGKLVTQIRNLHHV------------LGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~-~~~li~~l~~~~~~------------~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~ 423 (541)
|++++.|. +|+++. ++++.++++..... ++..+++..+++++..++.++...++..++++++.+.
T Consensus 185 K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~ 262 (367)
T 3nyt_A 185 APLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFEEEIALRQKVAAEYDLS 262 (367)
T ss_dssp SSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998663 788887 46777777765431 2345678888888888888888888888899999999
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc-cccc
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM-SYWD 502 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~-~~~~ 502 (541)
|++.+ + ..|...... .....++.+.++ + ...+.+.|+..++.++.+....+..+|... ....
T Consensus 263 L~~~~-~---~~~~~~~~~---------~~~~~~~~~~~~-~---~~~l~~~L~~~GI~~~~~~~~~~~~~~~~~~~~~~ 325 (367)
T 3nyt_A 263 LKQVG-I---GTPFIEVNN---------ISVYAQYTVRMD-N---RESVQASLKAAGVPTAVHYPIPLNKQPAVADEKAK 325 (367)
T ss_dssp HHHTT-C---CCCCCCTTE---------ECCCSSEEEECS-S---HHHHHHHHHHHTCCCBCSCSSCGGGSGGGCCTTCC
T ss_pred hccCC-e---eccCCCCCC---------ceeeEEEEEEeC-C---HHHHHHHHHHCCCceeccCCCccccChhhhccCCC
Confidence 98864 2 122111100 001224555554 2 234455555456666655332222233221 1111
Q ss_pred CCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 503 LSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 503 ~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
++..+. +..+.|||+++...+++.++.+.+++.+
T Consensus 326 ~~~~~~----~~~~~l~lp~~~~~t~~~i~~v~~~~~~ 359 (367)
T 3nyt_A 326 LPVGDK----AATQVMSLPMHPYLDTASIKIICAALTN 359 (367)
T ss_dssp CHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHC
T ss_pred ChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 221111 2356899999999888888888888764
No 62
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.94 E-value=5.4e-25 Score=230.54 Aligned_cols=285 Identities=12% Similarity=0.037 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-
Q 009172 212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (541)
Q Consensus 212 ~~~Le~~LA~l~----g----~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~- 282 (541)
..++++++++++ | .+.++++++|++|+.+++.+++++||+|+++.++|++.... +...|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 143 (399)
T 1c7n_A 68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYYPFFMA----IKNQERKIIECELL 143 (399)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCTHHHHH----HHTTTCEEEECCCE
T ss_pred cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEecccc
Confidence 667888888764 5 24677777888999999999999999999999999986643 3456788777754
Q ss_pred -------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----ccccc--
Q 009172 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALS-- 345 (541)
Q Consensus 283 -------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~~~l~-- 345 (541)
.|+++|+++++..++++|++++|+||||.++| +++|.++|+++|+++|+|++|..... .....
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (399)
T 1c7n_A 144 EKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSID 223 (399)
T ss_dssp EETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred cCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcC
Confidence 47999999997336999999999999999999 88999999999999999999875321 11111
Q ss_pred ---cCCcEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcCC-CccHHHHHHHHHhHH----HHHHHHHHHHHH
Q 009172 346 ---LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHLRVQQQNST 416 (541)
Q Consensus 346 ---~gaDivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g~-~~s~~~a~l~l~~l~----tl~~r~~~~~~n 416 (541)
.+.++++.|+||.++.+| ...|+++++ +++++.++.....++. ..++...+++...++ .+....++..++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (399)
T 1c7n_A 224 EQLADKTITFTAPSKTFNIAG-MGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKN 302 (399)
T ss_dssp HHHHTTEEEEECSHHHHTCGG-GCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ccccCcEEEEEeChhhccccc-hheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 356799999999998555 346888886 5788888876655432 446655554444443 344445566678
Q ss_pred HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceec
Q 009172 417 ALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQ 494 (541)
Q Consensus 417 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~ 494 (541)
++.+.+.|++ +|.+.. ..| ..+.+++++++........+.+.|. ..++.+..|..+..
T Consensus 303 ~~~l~~~L~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~--- 362 (399)
T 1c7n_A 303 QRIVKDFFEVNHPEIKA-PLI----------------EGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD--- 362 (399)
T ss_dssp HHHHHHHHHHHCTTSBC-CCC----------------SBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG---
T ss_pred HHHHHHHHHhhCCCCeE-ecC----------------CceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC---
Confidence 8888888887 666531 111 1234567888631012345666663 45666665543210
Q ss_pred CcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 495 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 495 pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.||||++.. +.++.++.|.++++
T Consensus 363 ------------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 391 (399)
T 1c7n_A 363 ------------------GGIGFERINLAAPSSVIQESLERLNKALK 391 (399)
T ss_dssp ------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCeEEEEeccCHHHHHHHHHHHHHHHH
Confidence 1257899999975 23444455555554
No 63
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.94 E-value=2.7e-25 Score=228.91 Aligned_cols=282 Identities=10% Similarity=0.079 Sum_probs=205.0
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...+||++||+++|.+ +.+++++|++|+.+++.++. ||+|+++.|+|.++.. .++..|.++.+++
T Consensus 44 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l~--gd~Vi~~~p~~~~~~~----~~~~~g~~~~~v~ 117 (350)
T 3fkd_A 44 IRHYPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAFR--GSRSLIAIPSFAEYED----ACRMYEHEVCFYP 117 (350)
T ss_dssp GGSCCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHTT--TCEEEEEESCCHHHHH----HHHHTTCEEEEEE
T ss_pred HhcCCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHHC--CCEEEEeCCCcHHHHH----HHHHcCCeEEEEe
Confidence 45566666689999999999974 56677777799999999887 9999999999998653 4455689998887
Q ss_pred C-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CEEEEEcCCCCCCccc------ccccCCcEEEE
Q 009172 282 P-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCIDGTFATPLNQK------ALSLGADLVLH 353 (541)
Q Consensus 282 ~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g-illvvDea~a~~~~~~------~l~~gaDivv~ 353 (541)
. ++.+.+ ...++++|++++|+||||.++|+++|.++++.++ .++|+|++|....... ....+.++++.
T Consensus 118 ~~~~~~~~----~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~ 193 (350)
T 3fkd_A 118 SNEDIGEA----DFSNMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVY 193 (350)
T ss_dssp TTSCGGGS----CCTTCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEE
T ss_pred cCCccccC----ccCCCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEe
Confidence 7 443332 2235899999999999999999999999998875 7999999987543211 11335669999
Q ss_pred CCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhCCCc
Q 009172 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---HLRVQQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl---~~r~~~~~~na~~la~~L~~~p~v 430 (541)
|+||.++.+| ...|++++++++++.++..... ...++...+++...++.. ..++++..++++++.+.|+++|.+
T Consensus 194 S~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (350)
T 3fkd_A 194 SFSHAYGIPG-LRIGYIVANKDFMKRVAAFSTP--WAVNALAIEAAKFILIHPAQFTLPIRKWQRNTVDFITALNRLDGV 270 (350)
T ss_dssp ESHHHHSCGG-GCCEEEECCHHHHHHHHTTCCT--TCSCHHHHHHHHHHHHCTTTTCCCHHHHHHHHHHHHHHHHHSTTE
T ss_pred cCchhccCcc-hheEeEEeCHHHHHHHHHhCCC--CCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9999998554 3468888999999888766543 345666666666666542 344555568889999999988766
Q ss_pred eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccceecCcccccccCCHHHHH
Q 009172 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERL 509 (541)
Q Consensus 431 ~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~ 509 (541)
. + +|. .|+++++.++.. ...++.+.|.. .++.++.|..+.
T Consensus 271 ~-~-~~~----------------~~~~~~~~~~~~--~~~~l~~~L~~~~gi~v~~g~~f~------------------- 311 (350)
T 3fkd_A 271 E-V-HPS----------------GTTFFLLRLKKG--TAAELKKYMLEEYNMLIRDASNFR------------------- 311 (350)
T ss_dssp E-E-CCC----------------SSSEEEEEESSS--CHHHHHHHHHHTTCEECEECTTST-------------------
T ss_pred E-E-CCC----------------CCcEEEEECCCC--CHHHHHHHHHHHCCEEEEeCccCC-------------------
Confidence 4 2 222 467888999753 34566677665 688888775431
Q ss_pred hcCCCCCeEEEEecCC-CHHHHHHHHHHHHh
Q 009172 510 KYGIMDNLVRFSFGVE-DFEDLKADVLQALH 539 (541)
Q Consensus 510 ~~gi~~~~IRlSvG~E-d~edli~dL~~AL~ 539 (541)
+..+++||||++.+ +.+++++.|++.++
T Consensus 312 --~~~~~~iRis~~~~~~~~~l~~al~~~~~ 340 (350)
T 3fkd_A 312 --GLDESYVRITTQRPAQNQLFIKALETFLE 340 (350)
T ss_dssp --TCCTTEEEEECCCHHHHHHHHHHHHHHHT
T ss_pred --CCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 12468999999963 34566776666554
No 64
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.94 E-value=2.4e-25 Score=236.03 Aligned_cols=295 Identities=16% Similarity=0.142 Sum_probs=203.2
Q ss_pred CCCchh-HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhc--cCCC--EEEEcCCCCcchHHHHHhhccc
Q 009172 206 RYGNPT-TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALV--PAGG--HIVTTTDCYRKTRIFIETVLPK 272 (541)
Q Consensus 206 R~~~p~-~~~Le~~LA~l~g--------~~~~i~~sSG~~Ai~~al~all--~~GD--~VIv~~~~y~~~~~~~~~~l~~ 272 (541)
+|+.+. ..+++++||++++ .++++++++|++|+.+++.+++ ++|| +|+++.++|.++...+ ..
T Consensus 77 ~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~----~~ 152 (437)
T 3g0t_A 77 IYPNLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQC----RI 152 (437)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTTSCTTCSCCEEEEESCCHHHHHHH----HH
T ss_pred CCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhcCCCCCccEEEEeCCCcHhHHHHH----HH
Confidence 344433 5788888888876 2467777777899999999998 9999 9999999999866443 34
Q ss_pred CCcEEEEeCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc--
Q 009172 273 MGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (541)
Q Consensus 273 ~Gi~v~~vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-- 341 (541)
.|.++.+++.+ |+++|+++++..++++|++++|+||||.+++ +++|+++|+++|++||+|++|+.....
T Consensus 153 ~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~ 232 (437)
T 3g0t_A 153 LGQKFESFDLFEYRGEKLREKLESYLQTGQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKD 232 (437)
T ss_dssp HTCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSC
T ss_pred cCCEEEEEeecCCCCccCHHHHHHHHhcCCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCC
Confidence 56777666542 7899999993336999999999999999997 667899999999999999998743211
Q ss_pred -----------ccc-ccCCcEEEECCccccCCCCCceEEEEEeChHHHH-H-----------------HHHHhhhcCCCc
Q 009172 342 -----------KAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT-Q-----------------IRNLHHVLGGAL 391 (541)
Q Consensus 342 -----------~~l-~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~-----------------l~~~~~~~g~~~ 391 (541)
... ..+.++++.|+||.++.+| ...|++++++++++ . +...........
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3g0t_A 233 YSHPGEPLYQPSVANYTDNYILALSSSKAFSYAG-QRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGA 311 (437)
T ss_dssp CCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGG-GCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSS
T ss_pred cCcccccchhhccCCCCCcEEEEEcCccCCCCcc-ceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCC
Confidence 111 2467799999999998554 34789999998888 6 655544444455
Q ss_pred cHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 392 NPNAAYLIIRGMKT-------LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 392 s~~~a~l~l~~l~t-------l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
++...+++...++. +..+.++..++++.+.+.|+++ ++. +.++.-...| ...|.++++.+++
T Consensus 312 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~~~~~~---------~~~~~~~~~~~~~ 380 (437)
T 3g0t_A 312 THSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFN-IVYDKDGNEP---------LADGFYFTVGYKG 380 (437)
T ss_dssp CHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEE-ESSCEETTEE---------CCSSSEEEEEETT
T ss_pred CHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCE-EeccccCCCC---------CceeEEEEEecCC
Confidence 66666665555554 4455667778888899999887 432 2211000000 0246788999973
Q ss_pred CHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009172 465 DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH 539 (541)
Q Consensus 465 ~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---Ed~edli~dL~~AL~ 539 (541)
.....+.+.|...++.+..|..+.. ..++.||||++. |+.+.+++.|.++++
T Consensus 381 --~~~~~l~~~L~~~gi~v~~~~~~~~---------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~~~ 435 (437)
T 3g0t_A 381 --MDSSKLIEKFVRYGMCAITLKTTGS---------------------KRNEAMRICTSLLPESQFPDLEKRLQMLNA 435 (437)
T ss_dssp --CCHHHHHHHHHHTTEECEESTTTTC---------------------CCTTCEEEECSSSCGGGHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHcCeEEeeccccCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 2234555555545776665533210 123789999995 455666666666554
No 65
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.94 E-value=8.3e-25 Score=228.24 Aligned_cols=282 Identities=15% Similarity=0.185 Sum_probs=194.7
Q ss_pred hHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...++++++++++ |. ++.+++++|++|+.+++.+++++||+|++++++|++.... ++..|.++..++.
T Consensus 68 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~v~~ 143 (388)
T 1j32_A 68 GEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEM----VKLAEGTPVILPT 143 (388)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHH----HHHTTCEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHH----HHHcCCEEEEecC
Confidence 3567777777766 42 3566666678999999999999999999999999986543 4456888888764
Q ss_pred C-------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----ccc---
Q 009172 283 A-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL--- 344 (541)
Q Consensus 283 ~-------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~l--- 344 (541)
+ |+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... ...
T Consensus 144 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 222 (388)
T 1j32_A 144 TVETQFKVSPEQIRQAITP-KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAAS 222 (388)
T ss_dssp CGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSC
T ss_pred CcccCCCCCHHHHHHhcCc-CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHcc
Confidence 2 78999999987 5999999999999999976 889999999999999999998754321 111
Q ss_pred --ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHH
Q 009172 345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTAL 418 (541)
Q Consensus 345 --~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~~~na~ 418 (541)
..+.|+++.|+||+++.+| ...|++++++++++.++..........++...+.+...++ .+....++..++++
T Consensus 223 ~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 301 (388)
T 1j32_A 223 PEAYERSVVCSGFAKTYAMTG-WRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRR 301 (388)
T ss_dssp HHHHHTEEEEEESTTTTTCTT-TCCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEeechhccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 1457899999999997565 3468999999998888776554444455655554444443 24455566677888
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-CHHHHHHHHHHcCC-CceeecCCCcccceecCc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-DLTATIKFIDALKI-PYIAPSFGGCESIVDQPA 496 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g-~~~~~~~~l~~L~~-~~iavS~G~~~sl~~~pa 496 (541)
.+.+.|+++|++. +..|. .|.++++.++. + ....++.+.|.. .++.+..|..+
T Consensus 302 ~l~~~L~~~~g~~-~~~~~----------------~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~------- 356 (388)
T 1j32_A 302 YMLDALNAMPGLE-CPKPD----------------GAFYMFPSIAKTG-RSSLDFCSELLDQHQVATVPGAAF------- 356 (388)
T ss_dssp HHHHHHHTCTTCB-CCCCC----------------BTTEECCBCGGGT-CCHHHHHHHHHHHHCEECEEGGGG-------
T ss_pred HHHHHHhhCCCCc-ccCCC----------------eeEEEEEecCCCC-CCHHHHHHHHHHhCCEEEeChhhh-------
Confidence 8889998876553 11111 23456666642 1 123345555432 36666554321
Q ss_pred ccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 497 IMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 497 ~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
+ .++.||||++.. +.++.++.|.++++
T Consensus 357 ---------------~-~~~~iRis~~~~~~~i~~~~~~l~~~l~ 385 (388)
T 1j32_A 357 ---------------G-ADDCIRLSYATDLDTIKRGMERLEKFLH 385 (388)
T ss_dssp ---------------T-CTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ---------------C-CCCcEEEEecCCHHHHHHHHHHHHHHHH
Confidence 1 146899999842 33444555555554
No 66
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.94 E-value=3.5e-25 Score=232.49 Aligned_cols=290 Identities=11% Similarity=0.077 Sum_probs=201.5
Q ss_pred CchhHHHHHHHHHHHhCCCc--EE-EeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC-
Q 009172 208 GNPTTVVVEEKMSALEGAES--TV-IMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~--~i-~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~- 283 (541)
..+..+++++++++++|.+. .+ +++||++|+.+++.+++++||+|+++++.|.+.. +...++..|+++++++.+
T Consensus 42 ~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~ 119 (416)
T 3isl_A 42 FTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYL--LTEIAERYGANVHMLECEW 119 (416)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHhcCCeeEEEecCC
Confidence 35668899999999999743 34 5678889999999999999999999999998732 334566678888888754
Q ss_pred ----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCccc
Q 009172 284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKF 358 (541)
Q Consensus 284 ----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK~ 358 (541)
|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+....++|+++.|+||+
T Consensus 120 ~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~ 199 (416)
T 3isl_A 120 GTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKC 199 (416)
T ss_dssp TCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSST
T ss_pred CCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccc
Confidence 899999999732589999999999999999999999999999999999999875432 344456899999999998
Q ss_pred cCCCCCceEEEEEeChHHHHHHHHHh--------------------------------------hhcCCCccHHHHHHHH
Q 009172 359 IGGHNDVLAGSISGSGKLVTQIRNLH--------------------------------------HVLGGALNPNAAYLII 400 (541)
Q Consensus 359 lgg~g~v~gG~vv~~~~li~~l~~~~--------------------------------------~~~g~~~s~~~a~l~l 400 (541)
++++.+ .|+++.++++++.+.... ....++.+......+.
T Consensus 200 l~g~~g--~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 277 (416)
T 3isl_A 200 LSVPSG--MAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALR 277 (416)
T ss_dssp TCCCSS--EEEEEECHHHHHHHHTC------------------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHH
T ss_pred cCCCCC--eEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHH
Confidence 555432 688999999888776321 0011233333333333
Q ss_pred HhHHH-----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009172 401 RGMKT-----LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA 475 (541)
Q Consensus 401 ~~l~t-----l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~ 475 (541)
..++. +....++..++++++.+.|++. ++. +..|. . ...+++++|.++.+ ....++.+.
T Consensus 278 ~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~l~~~ 341 (416)
T 3isl_A 278 EGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLR-LFGDD-----S--------CKMPVVTCVEIPGG-IDGESVRDM 341 (416)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eccCc-----c--------ccCCcEEEEeCCCC-CCHHHHHHH
Confidence 33332 3455566677888888888874 332 11110 0 12467899998632 123455555
Q ss_pred cCCC-ceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CC-HHHHHHHHHHHHhh
Q 009172 476 LKIP-YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----ED-FEDLKADVLQALHA 540 (541)
Q Consensus 476 L~~~-~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed-~edli~dL~~AL~~ 540 (541)
|... ++.++.|.. ...++.|||+++. ++ .+++++.|.+++++
T Consensus 342 L~~~~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~~ 389 (416)
T 3isl_A 342 LLAQFGIEIASSFG-----------------------PLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLLR 389 (416)
T ss_dssp HHHHHCEECBCCCS-----------------------TTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEecCCC-----------------------CCCCCEEEEecccCCCcHHHHHHHHHHHHHHHHH
Confidence 5333 666665521 1236799999932 23 56666677666653
No 67
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.94 E-value=2.5e-25 Score=235.65 Aligned_cols=296 Identities=16% Similarity=0.130 Sum_probs=203.7
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhCC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALEGA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
..+.|+....+..+++++.+++.+|. +..+++++|++|+.+++.+++++||+|++..+.|+++...+ ...|.
T Consensus 90 ~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~~~~y~~~~~~~----~~~g~ 165 (421)
T 3l8a_A 90 HIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAFSEKGDAVLINSPVYYPFARTI----RLNDH 165 (421)
T ss_dssp CCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEEESCCHHHHHHH----HHTTE
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHH----HHCCC
Confidence 45778877777888888888888872 35677777789999999999999999999999999866443 34577
Q ss_pred EEEEeCC--------CCHHHHHHhccCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEEcCCCCCCc----
Q 009172 276 TATVIDP--------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (541)
Q Consensus 276 ~v~~vd~--------~dle~Le~ai~~~~tklV~lesp~NPtG~v~---di~~Ia~la~~~gillvvDea~a~~~~---- 340 (541)
++..++. .|+++|++++++.++++|++++|+||+|.+. ++++|.++|+++|++||+||+|.....
T Consensus 166 ~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~ 245 (421)
T 3l8a_A 166 RLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNT 245 (421)
T ss_dssp EEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCC
T ss_pred EEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence 7666653 3899999999733599999999999999984 588999999999999999999865321
Q ss_pred -ccccc-----cCCcEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcCC-CccHHHHHHHHHhHH----HHHH
Q 009172 341 -QKALS-----LGADLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG-ALNPNAAYLIIRGMK----TLHL 408 (541)
Q Consensus 341 -~~~l~-----~gaDivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g~-~~s~~~a~l~l~~l~----tl~~ 408 (541)
..... .+.++++.|++|.++.+| ...|+++.+ +++.+.+.......+. ..++..+..+...++ .+..
T Consensus 246 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G-~~~G~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~~~~~~~~ 324 (421)
T 3l8a_A 246 HHSLNTLDASYKDFTIILSSATKTFNIAG-TKNSFAIIQNESLRRKFQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEE 324 (421)
T ss_dssp CCCGGGSCTTGGGTEEEEECSHHHHTCGG-GCCEEEECCSHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHCHHHHHH
T ss_pred CccHHHcCchhcCcEEEEEeChhhccCch-hheEeEEcCCHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHhccHHHHHH
Confidence 11111 245699999999998555 346888877 7888888766543332 455655554444443 3455
Q ss_pred HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCC
Q 009172 409 RVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGG 487 (541)
Q Consensus 409 r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L-~~~~iavS~G~ 487 (541)
..++..++.+.+.+.|+++|.+..+ .|. .+.++|++++........+.+.| +..++.++.|.
T Consensus 325 ~~~~~~~~~~~l~~~L~~~~~i~~~-~~~----------------~~~~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~ 387 (421)
T 3l8a_A 325 LKTVIEGNIKLVIKELEAKTKIKVM-EPE----------------GTYLVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGA 387 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCEEE-CCS----------------BSSEEEEECGGGTCCTTHHHHHHHHTTCEECEEGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEe-CCC----------------eeEEEEEeccccCCCHHHHHHHHHHhCCEEEECch
Confidence 5666778888888999887666433 221 23455688863101223445555 24477776664
Q ss_pred cccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009172 488 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL 538 (541)
Q Consensus 488 ~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL 538 (541)
.+.. ..++.|||+++.. +.++.++.|.++|
T Consensus 388 ~f~~---------------------~~~~~iRi~~~~~~~~i~~~l~~l~~~l 419 (421)
T 3l8a_A 388 HFGK---------------------EGKYFARLNVATPKNTVQEALSRIISVF 419 (421)
T ss_dssp GGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHC
T ss_pred hhCC---------------------CCCCEEEEEecCCHHHHHHHHHHHHHHH
Confidence 3210 1358999999952 2333444444443
No 68
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.94 E-value=6.7e-25 Score=229.48 Aligned_cols=289 Identities=16% Similarity=0.143 Sum_probs=201.8
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccC----------CCEEEEcCCCCcchHHHHHhhc
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA----------GGHIVTTTDCYRKTRIFIETVL 270 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~----------GD~VIv~~~~y~~~~~~~~~~l 270 (541)
.+.+..+.++..++++++|++++|.+.+++++||++|+.+++..+..+ ||+|++..++|++.........
T Consensus 69 ~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 148 (392)
T 3ruy_A 69 TLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMS 148 (392)
T ss_dssp SCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTC
T ss_pred cccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhcc
Confidence 344555778999999999999999888999999999999999876644 6899999999987543332221
Q ss_pred cc---------CCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCC
Q 009172 271 PK---------MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT 337 (541)
Q Consensus 271 ~~---------~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~ 337 (541)
.. ....+..++..|+++|++++++ ++++|++++|+||||.++| +++|.++|++||++||+|++|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~ 227 (392)
T 3ruy_A 149 SNEEYKRGFGPMLPGIIVIPYGDLEALKAAITP-NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTG 227 (392)
T ss_dssp SCTTTTTTCCSCCSSEEEECTTCHHHHHHHCCT-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTT
T ss_pred CChhhccccCCCCCCCeeeCcccHHHHHHHhcc-CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhC
Confidence 11 1123566677799999999986 5999999999999999998 99999999999999999999853
Q ss_pred CC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HH
Q 009172 338 PL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LR 409 (541)
Q Consensus 338 ~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~--~r 409 (541)
.. .........|+++ +||.++| |...+|++++++++++.+...........++..++.+...++.+. ..
T Consensus 228 ~~~~g~~~~~~~~~~~~d~~~--~SK~l~g-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 304 (392)
T 3ruy_A 228 LGRTGKVFACDWDNVTPDMYI--LGKALGG-GVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAALEVLEEEKL 304 (392)
T ss_dssp TTTTSSSSGGGGGTCCCSEEE--ECGGGGT-TTSCCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTH
T ss_pred CCccccchhhhccCCCCCEEE--EchhhhC-ChhhhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 21 1122233467775 5699987 323578999998888776654443444567777777666766553 33
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009172 410 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 489 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~ 489 (541)
.++..++++++.+.|++... |.+. ...+.|+++++.+++ ...++.+.|...++.++.|
T Consensus 305 ~~~~~~~~~~l~~~L~~~~~------~~~~----------~~~~~g~~~~~~~~~---~~~~l~~~l~~~gi~v~~~--- 362 (392)
T 3ruy_A 305 TERSLQLGEKLVGQLKEIDN------PMIT----------EVRGKGLFIGIELNE---PARPYCEQLKAAGLLCKET--- 362 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCC------TTEE----------EEEEETTEEEEEESS---CSHHHHHHHHTTTEECCCB---
T ss_pred HHHHHHHHHHHHHHHHHhcC------CCce----------EEEeeeeEEEEEEcc---hHHHHHHHHHHCCcEEecC---
Confidence 45556677777777776421 1110 012357889999874 3345666666566665533
Q ss_pred cceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 490 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 490 sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
..+.|||+++...+++.++.+.++|+
T Consensus 363 ------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~ 388 (392)
T 3ruy_A 363 ------------------------HENVIRIAPPLVISEEDLEWAFQKIK 388 (392)
T ss_dssp ------------------------TTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 14789999776555544455444443
No 69
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.94 E-value=2.6e-24 Score=224.09 Aligned_cols=271 Identities=16% Similarity=0.163 Sum_probs=194.2
Q ss_pred CCCch-hHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 206 RYGNP-TTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 206 R~~~p-~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
+|+.+ ...+|+++|+++++.+ +++++++|++|+.+++.+++++||+|+++.++|++.... ++..|.++..++.
T Consensus 56 ~y~~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~ 131 (381)
T 1v2d_A 56 QYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPD----AFLAGAKARLVRL 131 (381)
T ss_dssp SCCCTTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEeC
Confidence 34443 5789999999999873 678888888999999999999999999999999986643 4456778777754
Q ss_pred --------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----cccc--c
Q 009172 283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKAL--S 345 (541)
Q Consensus 283 --------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~l--~ 345 (541)
.|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..... .... .
T Consensus 132 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~ 210 (381)
T 1v2d_A 132 DLTPEGFRLDLSALEKALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFA 210 (381)
T ss_dssp EEETTEEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHC
T ss_pred CCCCccCCcCHHHHHHhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhc
Confidence 379999999986 5999999999999999987 78999999999999999999875432 1122 3
Q ss_pred cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHHH
Q 009172 346 LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTALR 419 (541)
Q Consensus 346 ~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na~~ 419 (541)
.+.|+++.|+||.++.+| ...|++++++++++.++........+.++...+.+...++. +....++..++++.
T Consensus 211 ~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 289 (381)
T 1v2d_A 211 PERTFTVGSAGKRLEATG-YRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDL 289 (381)
T ss_dssp TTTEEEEEEHHHHTTCGG-GCCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 478999999999998555 34789999998988887665544444455554444444443 23445556677888
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 499 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~ 499 (541)
+.+.|++. ++. +..| ..|.++++.+++. + ...+ +...++.+..|..+.. .
T Consensus 290 l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~-~-~~~~---l~~~gi~v~~g~~~~~---~---- 339 (381)
T 1v2d_A 290 LAGGLRAM-GLR-VYVP----------------EGTYFLMAELPGW-D-AFRL---VEEARVALIPASAFYL---E---- 339 (381)
T ss_dssp HHHHHHHT-TCC-EECC----------------SBSSEEEEECTTC-C-HHHH---HHHTCEECEEGGGGCS---S----
T ss_pred HHHHHHHC-CCE-ecCC----------------CcceEEEEecChH-h-HHHH---HHhCCEEEecchHhCC---C----
Confidence 88888873 332 2222 1356888988753 2 3333 3334566555433210 0
Q ss_pred cccCCHHHHHhcCCCCCeEEEEecC
Q 009172 500 YWDLSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 500 ~~~~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
+..++.||||++.
T Consensus 340 ------------~~~~~~iRi~~~~ 352 (381)
T 1v2d_A 340 ------------DPPKDLFRFAFCK 352 (381)
T ss_dssp ------------SCCTTEEEEECCS
T ss_pred ------------CCCCCEEEEEeCC
Confidence 0135799999997
No 70
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.94 E-value=2.7e-25 Score=229.31 Aligned_cols=255 Identities=16% Similarity=0.137 Sum_probs=185.7
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCC--EEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGG--HIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD--~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---- 282 (541)
+|...+|+++|++++|.+..+++++|++|+.+++.+++.+|| .|+++.+.|...+... ......|+++..++.
T Consensus 46 ~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~~ 124 (357)
T 3lws_A 46 GAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQD-GLKELHPIETILVGAADRL 124 (357)
T ss_dssp ETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHSSCEEEECSCTTSC
T ss_pred ChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHhhcCCCcEEEecccceeeeeccc-hhhhccCcEEEEecCCCCC
Confidence 588999999999999998889999999999999999999998 6777766655433210 012234888888764
Q ss_pred CCHHHHHHhccCCCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEEcCCCC------CCcccccccCCcEEE
Q 009172 283 ADMEGLEAALNNNNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT------PLNQKALSLGADLVL 352 (541)
Q Consensus 283 ~dle~Le~ai~~~~tklV~lesp~NPt-G~v~d---i~~Ia~la~~~gillvvDea~a~------~~~~~~l~~gaDivv 352 (541)
.|+++|+++. + +++|++++|+||+ |.+.+ +++|.++|++||++||+|++|.. +.....+..+.|+++
T Consensus 125 ~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~ 201 (357)
T 3lws_A 125 MTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIY 201 (357)
T ss_dssp CCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEE
T ss_pred cCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEE
Confidence 3789999873 3 8999999999998 99886 88999999999999999999751 111122234578999
Q ss_pred ECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009172 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 353 ~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~--s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v 430 (541)
.|+||+++++. +|++++++++++.++.....++... ....+..+...++....++++..++++++.+.|+++|++
T Consensus 202 ~s~sK~~~~~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~ 278 (357)
T 3lws_A 202 ISFYKGLGGIA---GAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRKDRMGQYYEQAKQLAEQFNALPGV 278 (357)
T ss_dssp EESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTE
T ss_pred EeccccCCCCc---eEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999996654 4999999999998887665554332 222233334556665556666778889999999988776
Q ss_pred eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCC
Q 009172 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFG 486 (541)
Q Consensus 431 ~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G 486 (541)
.....|. .++++++.+++.. .....+.+.|...++.+..|
T Consensus 279 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g 319 (357)
T 3lws_A 279 HTTPEVP----------------VSNMFHLHFDGQAADISPKLEQVQEETGLGFVGY 319 (357)
T ss_dssp EEESSSC----------------SSSEEEEEEESCHHHHHHHHHHHHHHHCEESCSC
T ss_pred eeccCCC----------------cceEEEEEecCChHHHHHHHHHHHHhcCeEEecc
Confidence 4322332 4678999997642 23456666666667777665
No 71
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.94 E-value=5.3e-25 Score=230.18 Aligned_cols=282 Identities=15% Similarity=0.118 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC
Q 009172 212 TVVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA 283 (541)
Q Consensus 212 ~~~Le~~LA~l~g--------~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~ 283 (541)
..+++++|+++++ .++++++++|++|+.+++.+++++||+|+++.++|.++... +...|.++..++.+
T Consensus 70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~~ 145 (391)
T 3h14_A 70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQI----LRALGLVPVDLPTA 145 (391)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEECC
T ss_pred hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeecC
Confidence 5678888887763 25678888888999999999999999999999999986643 44568888877643
Q ss_pred -------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----ccccc-cCC
Q 009172 284 -------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS-LGA 348 (541)
Q Consensus 284 -------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~l~-~ga 348 (541)
|+++++++ ++++|++++|+||||.++| +++|+++|+++|+++|+|++|..... ..... .+.
T Consensus 146 ~~~~~~~d~~~l~~~----~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~ 221 (391)
T 3h14_A 146 PENRLQPVPADFAGL----DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDE 221 (391)
T ss_dssp GGGTTSCCHHHHTTS----CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSS
T ss_pred cccCCCCCHHHHHhc----CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCC
Confidence 78888766 4899999999999999998 78899999999999999999875332 12222 246
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR---GMKTLHLRVQQQNSTALRMAEILE 425 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~---~l~tl~~r~~~~~~na~~la~~L~ 425 (541)
++++.|+||.++.+| ...|++++++++++.+.......+...++...+.+.. ..+.+..+.++..++++.+.+.|+
T Consensus 222 ~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~ 300 (391)
T 3h14_A 222 CYVINSFSKYFSMTG-WRVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCDAELQANLDVYKANRKLMLERLP 300 (391)
T ss_dssp SEEEEESSSTTCCTT-SCCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEechhccCCcc-ceeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999997555 3478999999999998877766666666655444433 334556666777788888888888
Q ss_pred hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccceecCcccccccCC
Q 009172 426 AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLS 504 (541)
Q Consensus 426 ~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~G~~~sl~~~pa~~~~~~~~ 504 (541)
+++.+. +..| ..+.++++.++........+.+.|.. .++.++.|..+..
T Consensus 301 ~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~------------- 350 (391)
T 3h14_A 301 KAGFTR-IAPP----------------DGAFYVYADVSDLTDDSRAFAAEILEKAGVAVTPGLDFDP------------- 350 (391)
T ss_dssp HHTCCC-BCCC----------------CBTTEEEEECTTTCSCHHHHHHHHHHHHCEECEEGGGTCT-------------
T ss_pred HcCCCc-ccCC----------------CeeEEEEEecCccCCCHHHHHHHHHHHCCEEEcCchhhCC-------------
Confidence 764321 1111 13457788886311223444444322 3677766644321
Q ss_pred HHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 505 QSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 505 ~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
+..++.||||++.. +.++.++.|.++++
T Consensus 351 -------~~~~~~iRis~~~~~~~i~~~l~~l~~~~~ 380 (391)
T 3h14_A 351 -------ERGAGTLRFSYARATADIEEGLDRLEAFMQ 380 (391)
T ss_dssp -------TTGGGEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred -------CCCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 01257999999972 23344455555544
No 72
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.94 E-value=1.4e-24 Score=221.83 Aligned_cols=275 Identities=16% Similarity=0.181 Sum_probs=193.2
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC-cEEEeCCH-HHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE-STVIMASG-MSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~-~~i~~sSG-~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
+.+|+++...+|+++||+++|.+ +.+++++| ++++.+++..+ +||+|+++.|+|.+.. ..++..|+++..++
T Consensus 45 ~~~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~--~gd~vl~~~p~~~~~~----~~~~~~g~~~~~v~ 118 (337)
T 3p1t_A 45 INRYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYR----ARIAVSGLRHFEIG 118 (337)
T ss_dssp TTSCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS--TTSEEEEESSSCSHHH----HHHTTSCCEEEEEC
T ss_pred hccCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc--CCCeEEEeCCCcHHHH----HHHHHcCCEEEEec
Confidence 45667889999999999999974 34555555 58999988887 9999999999999865 34556789988887
Q ss_pred CC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCccc---ccccCCcEEEE
Q 009172 282 PA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQK---ALSLGADLVLH 353 (541)
Q Consensus 282 ~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~---~l~~gaDivv~ 353 (541)
.+ |+++++++ . ++++|++++|+||||.++|++++.++|+++++ +|+|++|....... ....+.++++.
T Consensus 119 ~~~~~~~d~~~l~~~--~-~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~ 194 (337)
T 3p1t_A 119 LTDDLLLDPNDLAQV--S-RDDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFR 194 (337)
T ss_dssp BCTTSSBCHHHHTTC--C-TTEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEE
T ss_pred CCCCCCCCHHHHHhh--c-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEe
Confidence 43 78888876 2 47999999999999999999999999999997 56699987432211 12235689999
Q ss_pred CCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 009172 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~~~~~na~~la~~L~~~p~v 430 (541)
|+||.++.+| ...|++++++++++.++.....+ ..++.....+...+ +.+..++++..++++++.+.|+++ ++
T Consensus 195 S~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 270 (337)
T 3p1t_A 195 SFSKSYGLAG-LRLGALFGPSELIAAMKRKQWFC--NVGTLDLHALEAALDNDRAREAHIAKTLAQRRRVADALRGL-GY 270 (337)
T ss_dssp ESSSTTCCTT-TCCEEEECCHHHHHHHHTTSCTT--CSCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred eCchhccCcc-hheEEEEeCHHHHHHHHhhcCCC--CCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-cC
Confidence 9999997555 34689999999998887654332 33444333333333 345566677777888888999876 33
Q ss_pred eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHh
Q 009172 431 KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLK 510 (541)
Q Consensus 431 ~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~ 510 (541)
. + ++ ..|+++++.++.+ +.. .+.|...++.++.|..+.
T Consensus 271 ~-~-~~----------------~~~~~~~~~~~~~-~~~---~~~l~~~gi~v~~g~~~~-------------------- 308 (337)
T 3p1t_A 271 R-V-AS----------------SEANFVLVENAAG-ERT---LRFLRERGIQVKDAGQFG-------------------- 308 (337)
T ss_dssp C-B-CC----------------CSSSEEEEECTTT-HHH---HHHHHHTTEECEEGGGGT--------------------
T ss_pred E-E-CC----------------CCCeEEEEEcCCH-HHH---HHHHHHCCeEEEECccCC--------------------
Confidence 1 1 11 1467888887643 333 333444467776664321
Q ss_pred cCCCCCeEEEEecC-CCHHHHHHHHHHH
Q 009172 511 YGIMDNLVRFSFGV-EDFEDLKADVLQA 537 (541)
Q Consensus 511 ~gi~~~~IRlSvG~-Ed~edli~dL~~A 537 (541)
. ++.||||++. ++.+.+++.|++.
T Consensus 309 --~-~~~iRis~~~~~~~~~l~~al~~~ 333 (337)
T 3p1t_A 309 --L-HHHIRISIGREEDNDRLLAALAEY 333 (337)
T ss_dssp --C-CSEEEEECCCHHHHHHHHHHHHHH
T ss_pred --C-CCeEEEecCCHHHHHHHHHHHHHH
Confidence 1 4799999995 2445555555544
No 73
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=1.1e-24 Score=223.88 Aligned_cols=282 Identities=11% Similarity=0.047 Sum_probs=200.5
Q ss_pred hhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 210 PTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
+..+++++++++++|.. ++++++||++|+.+++.+++++ +.+++..+.|. . .+...++..|+++++++.+
T Consensus 43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~~~-~~i~~~~~~~~-~--~~~~~~~~~g~~~~~v~~~~~~ 118 (362)
T 3ffr_A 43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCVEK-KSFHCVNGSFS-K--RFYEFAGELGREAYKEEAAFGK 118 (362)
T ss_dssp HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHCSS-EEEEEECSHHH-H--HHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhccCC-cEEEEcCcHHH-H--HHHHHHHHhCCCeEEEecCCCC
Confidence 56788999999999862 3677778889999999999988 55555555554 1 1223456678888887642
Q ss_pred --CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC-CCEEEEEcCCCCCCcccccccCCcEEEECCccccC
Q 009172 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK-GAIVCIDGTFATPLNQKALSLGADLVLHSATKFIG 360 (541)
Q Consensus 284 --dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~-gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lg 360 (541)
|+++|+ +++ +|++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+........ +|+++.|+||+++
T Consensus 119 ~~d~~~l~--~~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-~d~~~~s~~K~~~ 194 (362)
T 3ffr_A 119 GFYPADIT--VPA-DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-IDSVFFSVQKCFG 194 (362)
T ss_dssp CCCGGGCC--CCT-TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-CSEEEEETTSTTC
T ss_pred CCCHHHHh--ccC-CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-CcEEEEecccccC
Confidence 678887 565 599999999999999999999999999999 999999999876542212222 8999999999999
Q ss_pred CCCCceEEEEEeChHHHHHHHHHhh---------------------hcCCCccHHHHHHHHHhHHH-----HHHHHHHHH
Q 009172 361 GHNDVLAGSISGSGKLVTQIRNLHH---------------------VLGGALNPNAAYLIIRGMKT-----LHLRVQQQN 414 (541)
Q Consensus 361 g~g~v~gG~vv~~~~li~~l~~~~~---------------------~~g~~~s~~~a~l~l~~l~t-----l~~r~~~~~ 414 (541)
++.+ .|+++.+++++++++.... ....+.+....+.+...++. +..+.++..
T Consensus 195 ~~~G--~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 272 (362)
T 3ffr_A 195 LPAG--LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTE 272 (362)
T ss_dssp CCSC--CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred CCCc--eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4432 4788888888887776442 00223344333333333332 455677778
Q ss_pred HHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceec
Q 009172 415 STALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQ 494 (541)
Q Consensus 415 ~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~ 494 (541)
++++++.+.|+++|++. +..|. +. ...+.+++|.+++ ...++.+.|...++.++.|...
T Consensus 273 ~~~~~l~~~L~~~~g~~-~~~~~----~~--------~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~~g~~~----- 331 (362)
T 3ffr_A 273 EKAALINTYIESSKVFS-FGVED----AK--------LRSMTTIVANTTM---LPGEINKILEPFDMAVGAGYGS----- 331 (362)
T ss_dssp HHHHHHHHHHHHCSSEE-ESSSC----GG--------GBCSSEEEEEESS---CHHHHHHHHGGGTEEEEECSGG-----
T ss_pred HHHHHHHHHHHHccCce-eccCC----hh--------hcCCceEEEecCC---CHHHHHHHHHHCCeEEecCccc-----
Confidence 88999999999987764 22211 11 1135689999975 4567777777768777755210
Q ss_pred CcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 495 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 495 pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..++.||||++..++++.++.+.++|++
T Consensus 332 ------------------~~~~~iRis~~~~~~~e~i~~l~~~l~~ 359 (362)
T 3ffr_A 332 ------------------KKETQIRIANFPAHSLEQVHKLVQTLKE 359 (362)
T ss_dssp ------------------GTTTEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ------------------cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1357999999998888888888888764
No 74
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.94 E-value=1.3e-24 Score=230.85 Aligned_cols=284 Identities=13% Similarity=0.122 Sum_probs=197.7
Q ss_pred chhHHHHHHHHHHHhC-------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 209 NPTTVVVEEKMSALEG-------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g-------~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
.+...+++++++++++ .++++++++|++|+.+++..++++||+|+++.|+|.+... .+...|+++..++
T Consensus 95 ~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~ 170 (427)
T 3dyd_A 95 SIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKT----LAESMGIEVKLYN 170 (427)
T ss_dssp TTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred CCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHH----HHHHcCCEEEEEe
Confidence 4567899999999998 2567888888999999999999999999999999988653 3445678777765
Q ss_pred C-------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----cccccc
Q 009172 282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL 346 (541)
Q Consensus 282 ~-------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~ 346 (541)
. .|+++|++++++ ++++|++++|+||||.++| +++|+++|+++|+++|+|++|..... ......
T Consensus 171 ~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~ 249 (427)
T 3dyd_A 171 LLPEKSWEIDLKQLEYLIDE-KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATL 249 (427)
T ss_dssp EEGGGTTEECHHHHHSSCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGG
T ss_pred cccccCCCCCHHHHHHHhcc-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHh
Confidence 3 289999999987 4999999999999999999 99999999999999999999875321 111223
Q ss_pred CCc---EEEECCccccCCCCCceEEEEEeC-------hHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHH
Q 009172 347 GAD---LVLHSATKFIGGHNDVLAGSISGS-------GKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQ 411 (541)
Q Consensus 347 gaD---ivv~S~sK~lgg~g~v~gG~vv~~-------~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~-----tl~~r~~ 411 (541)
+.+ +++.|+||.++.+|. ..|+++++ +++.+.+....... ...++..+..+...++ .+..+.+
T Consensus 250 ~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~a~~~~L~~~~~~~~~~~~~ 327 (427)
T 3dyd_A 250 STDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKLSQRI-LGPCTIVQGALKSILCRTPGEFYHNTLS 327 (427)
T ss_dssp CSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 333 778999999887764 35666664 35666666544322 2345555544444444 3555667
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-CCCceeecCC
Q 009172 412 QQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-KIPYIAPSFG 486 (541)
Q Consensus 412 ~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~----~~~~~~~l~~L-~~~~iavS~G 486 (541)
+..++++.+.+.|+++|.+. +..|. .|.++++.++.. ......+++.| +..++.+..|
T Consensus 328 ~~~~~~~~l~~~L~~~~g~~-~~~p~----------------~g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g 390 (427)
T 3dyd_A 328 FLKSNADLCYGALAAIPGLR-PVRPS----------------GAMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPA 390 (427)
T ss_dssp HHHHHHHHHHHHHHHSTTEE-EECCS----------------BTTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEG
T ss_pred HHHHHHHHHHHHHhcCCCce-ecCCC----------------eeEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECC
Confidence 77788899999999887764 33332 456778888511 01223444444 2346666555
Q ss_pred CcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 487 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 487 ~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..+. .++.+|||++.. +.++.++.|.++++
T Consensus 391 ~~~~-----------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~ 422 (427)
T 3dyd_A 391 TCFE-----------------------YPNFIRVVITVPEVMMLEACSRIQEFCE 422 (427)
T ss_dssp GGGT-----------------------CTTEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred cccC-----------------------CCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4321 257999999852 33445555555554
No 75
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.94 E-value=1.1e-24 Score=228.18 Aligned_cols=264 Identities=18% Similarity=0.195 Sum_probs=189.1
Q ss_pred hHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...+|++++++++ |. ++.+++++|++|+.+++.+++++||+|++++++|+++... +...|.++..++.
T Consensus 79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~ 154 (389)
T 1o4s_A 79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQ----IILAGGTVNVVET 154 (389)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEEec
Confidence 4678888888887 53 3577777778999999999999999999999999986643 3456788777753
Q ss_pred C-------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc----cccc---
Q 009172 283 A-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KALS--- 345 (541)
Q Consensus 283 ~-------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~----~~l~--- 345 (541)
+ |+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..+... ....
T Consensus 155 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~ 233 (389)
T 1o4s_A 155 FMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE 233 (389)
T ss_dssp CGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS
T ss_pred CCccCCCCCHHHHHHhccc-CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCC
Confidence 2 78999999987 5999999999999999988 889999999999999999998764321 1111
Q ss_pred -cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHH
Q 009172 346 -LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-LHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 346 -~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-l~~r~~~~~~na~~la~~ 423 (541)
.+.|+++.|+||+++.+| ...|++++++++++.++..........++...+.+...++. +....++..++++.+.+.
T Consensus 234 ~~~~~i~~~s~sK~~~~~G-~r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~l~~~ 312 (389)
T 1o4s_A 234 GFDRIVYINGFSKSHSMTG-WRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVER 312 (389)
T ss_dssp SSTTEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeechhhcCCcc-cceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 468999999999997555 34799999999988888766544444556555555444432 334455666778888888
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecCccccccc
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWD 502 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~~~~~~ 502 (541)
|+++ ++. +..| ..|.++++.++.+ ..++.+.|. ..++.+..|..+
T Consensus 313 L~~~-g~~-~~~~----------------~~~~~~~~~~~~~---~~~l~~~l~~~~gi~v~~g~~f------------- 358 (389)
T 1o4s_A 313 LKKM-GVK-FVEP----------------EGAFYLFFKVRGD---DVKFCERLLEEKKVALVPGSAF------------- 358 (389)
T ss_dssp HHHT-TCC-CCCC----------------SBSSEEEEECSSC---HHHHHHHHHHHHCEECEEGGGG-------------
T ss_pred HHhc-CCe-eecC----------------CcceEEEEeCCCC---HHHHHHHHHHHCCEEEeCchhc-------------
Confidence 8875 332 1111 1345778887512 234444443 446655544321
Q ss_pred CCHHHHHhcCCCCCeEEEEecC
Q 009172 503 LSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 503 ~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
+. ++.+|||++.
T Consensus 359 ---------~~-~~~~Ris~~~ 370 (389)
T 1o4s_A 359 ---------LK-PGFVRLSFAT 370 (389)
T ss_dssp ---------TC-TTEEEEECCS
T ss_pred ---------CC-CCeEEEEEeC
Confidence 11 3689999996
No 76
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.93 E-value=4.8e-25 Score=232.60 Aligned_cols=289 Identities=13% Similarity=0.163 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhC----C-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 212 TVVVEEKMSALEG----A-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 212 ~~~Le~~LA~l~g----~-----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
..+++++|+++++ . ++++++++|++|+.+++.+++++||+|+++.++|+++... +...|.++..++.
T Consensus 69 ~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~ 144 (422)
T 3fvs_A 69 YPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPM----TMMAGGRPVFVSL 144 (422)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHH----HHHcCCEEEEEec
Confidence 4566666666654 2 3567777777999999999999999999999999986643 3445777776642
Q ss_pred -----------------CCHHHHHHhccCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEEcCCCCCCcc-
Q 009172 283 -----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATPLNQ- 341 (541)
Q Consensus 283 -----------------~dle~Le~ai~~~~tklV~lesp~NPtG~v~---di~~Ia~la~~~gillvvDea~a~~~~~- 341 (541)
.|++++++++++ ++++|++++|+||||.++ ++++|.++|+++|+++|+|++|......
T Consensus 145 ~~~~~~~G~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~ 223 (422)
T 3fvs_A 145 KPGPIQNGELGSSSNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDG 223 (422)
T ss_dssp BCCCCCSSSCCBGGGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred ccccccccccccccCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC
Confidence 389999999987 599999999999999999 5889999999999999999998753211
Q ss_pred ----ccc----ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------
Q 009172 342 ----KAL----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------- 405 (541)
Q Consensus 342 ----~~l----~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------- 405 (541)
... ..+.++++.|+||.++.+| ...|++++++++++.+...........++...+.+...++.
T Consensus 224 ~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 302 (422)
T 3fvs_A 224 HQHISIASLPGMWERTLTIGSAGKTFSATG-WKVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQP 302 (422)
T ss_dssp CCCCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCT
T ss_pred CCCCChhhcccccCcEEEEecchhccCCcc-ceEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccch
Confidence 111 1245699999999998555 34789999999998887766544555566666555555543
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH------------HH
Q 009172 406 ---LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA------------TI 470 (541)
Q Consensus 406 ---l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~------------~~ 470 (541)
+....++..++++.+.+.|+++ ++. +..|. .|.++++.+...... ..
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (422)
T 3fvs_A 303 SSYFVQFPQAMQRCRDHMIRSLQSV-GLK-PIIPQ----------------GSYFLITDISDFKRKMPDLPGAVDEPYDR 364 (422)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECHHHHHHCCCCCCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCe-ecCCC----------------eeeEEEEechhhcccccccccccccccHH
Confidence 4455566778888889999876 443 23332 466788887531000 22
Q ss_pred HHHHH-cCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009172 471 KFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA 540 (541)
Q Consensus 471 ~~l~~-L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~~ 540 (541)
++... ++..++.++.|+.+..- + ......+.||||++. ++.++.++.|.+++++
T Consensus 365 ~~~~~ll~~~gv~v~~g~~f~~~--~--------------~~~~~~~~iRis~~~~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 365 RFVKWMIKNKGLVAIPVSIFYSV--P--------------HQKHFDHYIRFCFVKDEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHHCEECEEGGGGSCH--H--------------HHTTSCSEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCEEEeCcHHhcCC--c--------------CCCCCCCeEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 44443 33346777766543210 0 001236899999997 2345556666666654
No 77
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.93 E-value=1.4e-25 Score=232.75 Aligned_cols=281 Identities=13% Similarity=0.111 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhC--------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC-
Q 009172 213 VVVEEKMSALEG--------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA- 283 (541)
Q Consensus 213 ~~Le~~LA~l~g--------~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~- 283 (541)
.+++++++++++ .++.+++++|++|+.+++.+++++||+|+++.++|+++... +...|.++..++.+
T Consensus 61 ~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~ 136 (377)
T 3fdb_A 61 SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHFTPAQSKVIVPTPAYPPFFHL----LSATQREGIFIDATG 136 (377)
T ss_dssp CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSCTTCCEEEEESCCTHHHHH----HHHHTCCEEEEECTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCcHhHHHH----HHHcCCEEEEccCCC
Confidence 566777776655 25688888888999999999999999999999999986643 34457788877764
Q ss_pred --CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCccc-----cc----ccCCc
Q 009172 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK-----AL----SLGAD 349 (541)
Q Consensus 284 --dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~-----~l----~~gaD 349 (541)
|+++|+++++++ +++|++++|+||||.++| +++|.++|+++|+++|+|++|....... ++ ..+.+
T Consensus 137 ~~d~~~l~~~l~~~-~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 215 (377)
T 3fdb_A 137 GINLHDVEKGFQAG-ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVC 215 (377)
T ss_dssp SCCHHHHHHHHHTT-CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHE
T ss_pred CCCHHHHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcE
Confidence 899999999874 899999999999999986 5677777999999999999987532211 11 12345
Q ss_pred EEEECCccccCCCCCceEEEEE-eChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHH
Q 009172 350 LVLHSATKFIGGHNDVLAGSIS-GSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv-~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~la~~L 424 (541)
+++.|+||.+|.+|. ..|+++ .++++++.++..........++...+.+...++. +..+.++..++++.+.+.|
T Consensus 216 i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 294 (377)
T 3fdb_A 216 ITITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEI 294 (377)
T ss_dssp EEEECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999976653 457655 4788888887765544455666666555555543 4555666778888888999
Q ss_pred Hh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC---HHHHHHHHHHcCCCceeecCCCcccceecCccccc
Q 009172 425 EA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD---LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSY 500 (541)
Q Consensus 425 ~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~---~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~ 500 (541)
++ .|.+. +..|. .+.+++++++.. .+....++++ .++.+..|..+..
T Consensus 295 ~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~~~---~gi~v~~g~~~~~--------- 345 (377)
T 3fdb_A 295 PKRIPGAK-ITPMQ----------------ATYLMWIDFRDTTIEGSPSEFFIEK---AKVAMNDGAWFGE--------- 345 (377)
T ss_dssp HHHSTTCE-ECCCS----------------BCSEEEEECTTSCCCSCHHHHHHHH---HCEECEEGGGGCG---------
T ss_pred HhhCCCce-EecCC----------------eeEEEEEECcccCCCHHHHHHHHHh---CCEEecCChhccC---------
Confidence 87 66653 22221 344567888641 1223333332 2566665543221
Q ss_pred ccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009172 501 WDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA 540 (541)
Q Consensus 501 ~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~~ 540 (541)
..++.+|||++.. +.++.++.|.+++++
T Consensus 346 ------------~~~~~~Ris~~~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 346 ------------DGTGFCRLNFATSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp ------------GGTTEEEEECCSCHHHHHHHHHHHHHHHTT
T ss_pred ------------CCCCEEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 0257999999962 234445555555543
No 78
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.93 E-value=5.3e-25 Score=230.77 Aligned_cols=287 Identities=11% Similarity=0.061 Sum_probs=197.5
Q ss_pred hhHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 210 PTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
+..+++++++++++|.+ . .++++||++|+.+++.+++++||+|+++.++|.+.. +...+...|++++.++.+
T Consensus 46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~ 123 (411)
T 3nnk_A 46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHL--LCEIARRCRAEVHTIEVPWGE 123 (411)
T ss_dssp HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHH--HHHHHHHcCCeEEEEecCCCC
Confidence 45689999999999974 2 455667889999999999999999999999997732 224556678888887654
Q ss_pred --CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-cccccccCCcEEEECCccccC
Q 009172 284 --DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSATKFIG 360 (541)
Q Consensus 284 --dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-~~~~l~~gaDivv~S~sK~lg 360 (541)
|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+. ..+....++|+++.|+||+++
T Consensus 124 ~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~ 203 (411)
T 3nnk_A 124 VFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLG 203 (411)
T ss_dssp CCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTC
T ss_pred CCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccC
Confidence 89999999975359999999999999999999999999999999999999976543 234445689999999999865
Q ss_pred CCCCceEEEEEeChHHHHHHHHHh------------------------------------hhcCCCccHHHHHHHHHhHH
Q 009172 361 GHNDVLAGSISGSGKLVTQIRNLH------------------------------------HVLGGALNPNAAYLIIRGMK 404 (541)
Q Consensus 361 g~g~v~gG~vv~~~~li~~l~~~~------------------------------------~~~g~~~s~~~a~l~l~~l~ 404 (541)
++. ..|+++.++++++.++... ....++.+......+...++
T Consensus 204 ~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 281 (411)
T 3nnk_A 204 GPS--GTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECAR 281 (411)
T ss_dssp CCS--SEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH
T ss_pred CCC--ceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHH
Confidence 543 2689999999988876532 00112333333333333333
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-
Q 009172 405 T-----LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI- 478 (541)
Q Consensus 405 t-----l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~- 478 (541)
. +....++..++++++.+.|++. ++. +..| +. ...+++++|.++.+ .....+.+.|..
T Consensus 282 ~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~-----~~--------~~~~~~~~~~~~~~-~~~~~l~~~l~~~ 345 (411)
T 3nnk_A 282 LILQEGLDYGIARHKLHGDALVKGIQAM-GLE-TFGD-----LK--------HKMNNVLGVVIPQG-INGDQARKLMLED 345 (411)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BCSC-----GG--------GBCSSEEEEECCTT-CCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCE-eCCC-----cc--------cccccEEEEECCCC-CCHHHHHHHHHHh
Confidence 2 3445566677888888888875 321 1111 00 12467899998632 123344444432
Q ss_pred CceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEe-cCCC----HHHHHHHHHHHHh
Q 009172 479 PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVED----FEDLKADVLQALH 539 (541)
Q Consensus 479 ~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~Ed----~edli~dL~~AL~ 539 (541)
.++.+..|.. ...++.|||++ +..+ .+++++.|+++++
T Consensus 346 ~gi~v~~g~~-----------------------~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~ 388 (411)
T 3nnk_A 346 FGIEIGTSFG-----------------------PLHGKVWRIGTMGYNARKDCVMTTLSALEAVLN 388 (411)
T ss_dssp HSEEEEECCG-----------------------GGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred cCeEEeCccC-----------------------CCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHH
Confidence 2565554411 01357999998 7543 4455555555554
No 79
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.93 E-value=1.5e-24 Score=228.80 Aligned_cols=286 Identities=13% Similarity=0.093 Sum_probs=198.4
Q ss_pred chhHHHHHHHHHHHh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEE
Q 009172 209 NPTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~----g~-----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~ 279 (541)
.+...+|++++|+++ |. ++++++++|++|+.+++.+++++||+|+++.++|++....+ ...|.++..
T Consensus 74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~----~~~g~~~~~ 149 (412)
T 2x5d_A 74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGA----VIAGAQVRS 149 (412)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHH----HHHTCEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHcCCEEEE
Confidence 345678888888888 73 36788888889999999999999999999999999866443 345777777
Q ss_pred eCCC-------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----ccc
Q 009172 280 IDPA-------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (541)
Q Consensus 280 vd~~-------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~l 344 (541)
++.+ |+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..+... ...
T Consensus 150 ~~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 228 (412)
T 2x5d_A 150 VPLVPGIDFFNELERAIRESIP-KPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIM 228 (412)
T ss_dssp EECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred eecCCccCCCCCHHHHHHhccc-CceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChh
Confidence 6532 46889999986 5899999999999999987 578999999999999999998764321 111
Q ss_pred c----cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHH
Q 009172 345 S----LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNST 416 (541)
Q Consensus 345 ~----~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~n 416 (541)
. .+.|+++.|+||+++.+| ...|++++++++++.+.......+...++...+.+...++. +....++..++
T Consensus 229 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 307 (412)
T 2x5d_A 229 QVPGAKDIAVEFFTLSKSYNMAG-WRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQR 307 (412)
T ss_dssp GSTTGGGTEEEEEECC-CCSCTT-SCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHH
T ss_pred hccCccCcEEEEecCccccCCcc-cceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1 367899999999998555 34688999999999888766555555666666555555543 44455566677
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--HHHHHHHHHcC-CCceeecCCCccccee
Q 009172 417 ALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--TATIKFIDALK-IPYIAPSFGGCESIVD 493 (541)
Q Consensus 417 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~--~~~~~~l~~L~-~~~iavS~G~~~sl~~ 493 (541)
++.+.+.|+++ ++. + ++. ..|.++++.++.+. .....+.+.|. ..++.+..|..+..
T Consensus 308 ~~~l~~~L~~~-g~~-~-~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-- 367 (412)
T 2x5d_A 308 RDVLVKGLREA-GWM-V-ENP---------------KASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD-- 367 (412)
T ss_dssp HHHHHHHHHHH-TCC-C-CCC---------------SBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG--
T ss_pred HHHHHHHHHHC-CCE-e-cCC---------------CeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC--
Confidence 88888888875 322 1 110 13457888886321 02345555552 24666665543210
Q ss_pred cCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 494 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 494 ~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.||||++.. +.++.++.|.++|+
T Consensus 368 -------------------~~~~~iRis~~~~~~~l~~~l~~l~~~l~ 396 (412)
T 2x5d_A 368 -------------------YGDDHVRFALIENRDRLRQAVRGIKAMFR 396 (412)
T ss_dssp -------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 0257899999972 23344445555554
No 80
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.93 E-value=1.2e-24 Score=227.49 Aligned_cols=275 Identities=16% Similarity=0.118 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHh----C-----CC-cEEEeCCHHHHHHHHHHHhccCC-----CEEEEcCCCCcchHHHHHhhcccCCcE
Q 009172 212 TVVVEEKMSALE----G-----AE-STVIMASGMSASTVMLLALVPAG-----GHIVTTTDCYRKTRIFIETVLPKMGIT 276 (541)
Q Consensus 212 ~~~Le~~LA~l~----g-----~~-~~i~~sSG~~Ai~~al~all~~G-----D~VIv~~~~y~~~~~~~~~~l~~~Gi~ 276 (541)
..++++.+++++ | .+ +.+++++|++|+.+++.+++++| |+|+++.++|++... .+...|.+
T Consensus 68 ~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~----~~~~~g~~ 143 (396)
T 3jtx_A 68 LPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEG----ATLLGGGE 143 (396)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHH----HHHHTTCE
T ss_pred cHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHH----HHHHcCCE
Confidence 345666666544 5 34 67777778899999999999997 799999999988654 34456888
Q ss_pred EEEeCC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHH---HHHHHHhCCCEEEEEcCCCCCCccc--c--
Q 009172 277 ATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKL---VSDLCHKKGAIVCIDGTFATPLNQK--A-- 343 (541)
Q Consensus 277 v~~vd~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~---Ia~la~~~gillvvDea~a~~~~~~--~-- 343 (541)
+..++. .|+++|++++++ ++++|++++|+||||.+++.++ |+++|++||+++|+|++|....... +
T Consensus 144 ~~~v~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~ 222 (396)
T 3jtx_A 144 IHFANCPAPSFNPDWRSISEEVWK-RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLG 222 (396)
T ss_dssp EEEEECCTTTCCCCGGGSCHHHHH-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCC
T ss_pred EEEeecCCCCCccCHHHHHHhhcc-CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCch
Confidence 877753 267888888877 5999999999999999998665 8899999999999999987643211 1
Q ss_pred -c--------ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---HHHHHHHH
Q 009172 344 -L--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM---KTLHLRVQ 411 (541)
Q Consensus 344 -l--------~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l---~tl~~r~~ 411 (541)
. ..+.++++.|+||.++.+| ...|++++++++++.+.......+...++...+++...+ +.+....+
T Consensus 223 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~ 301 (396)
T 3jtx_A 223 CLQAAAQLGRSRQKLLMFTSLSKRSNVPG-LRSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWDDEQHVIDNRR 301 (396)
T ss_dssp HHHHHHHTTCCCTTEEEEEESTTTSSCGG-GCCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHhhhhhcccccCcEEEEeccccccCCcc-cceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence 1 2567899999999887665 346889999999999888776666666776666555555 34455555
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecCCCccc
Q 009172 412 QQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSFGGCES 490 (541)
Q Consensus 412 ~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L-~~~~iavS~G~~~s 490 (541)
+..++.+.+.+.|+++.. +..| ..|.++++++++. ....+.+.| +..++.++.|..+.
T Consensus 302 ~~~~~~~~l~~~l~~~~~---~~~~----------------~~~~~~~~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~ 360 (396)
T 3jtx_A 302 LYQEKFERVIPILQQVFD---VKLP----------------DASFYIWLKVPDG--DDLAFARNLWQKAAIQVLPGRFLA 360 (396)
T ss_dssp HHHHHHHHHHHHHTTTSC---CCCC----------------SSSSEEEEECTTS--CHHHHHHHHHHHHCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHHhcCC---ccCC----------------CeeEEEEEECCCC--CHHHHHHHHHHHCCEEEeCChHhC
Confidence 666777777888776421 1111 1466889998741 223444444 33467777765443
Q ss_pred ceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHH
Q 009172 491 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFED 529 (541)
Q Consensus 491 l~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~ed 529 (541)
.-. + ..+...+.||||++. +.++
T Consensus 361 ~~~------~---------~~~~~~~~iRis~~~-~~~~ 383 (396)
T 3jtx_A 361 RDT------E---------QGNPGEGYVRIALVA-DVAT 383 (396)
T ss_dssp CCC------T---------TCCTTTTEEEEECCS-CHHH
T ss_pred Ccc------c---------ccCCCCCeEEEEEcC-CHHH
Confidence 210 0 011246899999987 4433
No 81
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.93 E-value=6.2e-24 Score=221.68 Aligned_cols=285 Identities=13% Similarity=0.082 Sum_probs=196.1
Q ss_pred hHHHHHHHHHHHh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~-~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...++++++++++ |. + +++++++|++|+.+++.+++++||+|+++.++|++.... ++..|.++..++
T Consensus 68 g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~ 143 (386)
T 1u08_A 68 GVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPA----IALSGGIVKRMA 143 (386)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEee
Confidence 3567777777774 52 4 677888888999999999999999999999999986643 445677877765
Q ss_pred C------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-------cccc-
Q 009172 282 P------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-------QKAL- 344 (541)
Q Consensus 282 ~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-------~~~l- 344 (541)
. .|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..... ...+
T Consensus 144 ~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 222 (386)
T 1u08_A 144 LQPPHFRVDWQEFAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHP 222 (386)
T ss_dssp CCTTTCCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSH
T ss_pred cCcccCcCCHHHHHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhccc
Confidence 3 479999999986 5999999999999999986 67999999999999999999875321 1111
Q ss_pred -ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q 009172 345 -SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR 419 (541)
Q Consensus 345 -~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~ 419 (541)
..+.|+++.|+||+++++| ...|++++++++++.++..........++.....+...++. +....++..++++.
T Consensus 223 ~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 301 (386)
T 1u08_A 223 QLRERAVAVSSFGKTYHMTG-WKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDI 301 (386)
T ss_dssp HHHTTEEEEEEHHHHTTCGG-GCCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHH
T ss_pred CccCcEEEEecchhhcCCcc-cceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3478999999999998655 34689999999988887765544444455554444445543 33344555567777
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcC-CCceeecCCCcccceecCcc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALK-IPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~ 497 (541)
+.+.|+++ ++. +..| ..|.++++++++.. ....++.+.|. ..++.+..|..+.. .
T Consensus 302 l~~~L~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~---~-- 358 (386)
T 1u08_A 302 LVNALNES-RLE-ILPC----------------EGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA---D-- 358 (386)
T ss_dssp HHHHTTSS-SCE-ECCC----------------CBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS---S--
T ss_pred HHHHHHHC-CCe-ecCC----------------CceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCC---C--
Confidence 77777765 332 2212 13568899987420 12334555442 34666665533210 0
Q ss_pred cccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 498 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 498 ~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
...++.||||++. +++.++.+.+.|.+
T Consensus 359 --------------~~~~~~iRis~~~--~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 359 --------------PFPHKLIRLCFAK--KESTLLAAAERLRQ 385 (386)
T ss_dssp --------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred --------------CCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence 0135799999995 34555555566554
No 82
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.93 E-value=5.6e-25 Score=226.87 Aligned_cols=285 Identities=16% Similarity=0.104 Sum_probs=199.1
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCE--EEEcCCCCcchHHHHHhhcccCCcEEEEeCCC--
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGH--IVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~--VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-- 283 (541)
.++...+|++++++++|.+..++++||++|+.+++.+++.+||+ |+++.+.|...+... ......|.++..++..
T Consensus 46 ~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~-~~~~~~g~~~~~v~~~~~ 124 (359)
T 3pj0_A 46 NGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQD-GLKELQQITPLLLGTANQ 124 (359)
T ss_dssp BSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTT-HHHHHHCCEEEECSCTTS
T ss_pred CCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHhcCCCcEEEEeccceeeehhcc-hHHHhcCceEEecCCcCC
Confidence 47889999999999999988899999999999999999999987 555555543321110 1112348888887643
Q ss_pred --CHHHHHHhccCCCeeEEEEeCCCCCC-CcccCHHHH---HHHHHhCCCEEEEEcCCCCCC------cccccccCCcEE
Q 009172 284 --DMEGLEAALNNNNVSLFFTESPTNPF-LRCVDVKLV---SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLV 351 (541)
Q Consensus 284 --dle~Le~ai~~~~tklV~lesp~NPt-G~v~di~~I---a~la~~~gillvvDea~a~~~------~~~~l~~gaDiv 351 (541)
|+++|+++ .+ ++++|++++|+||+ |.++|.+++ .++|++||++||+|+++.... ....+..+.|++
T Consensus 125 ~~d~~~l~~~-~~-~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~ 202 (359)
T 3pj0_A 125 LLTIDDIKSL-RE-PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSV 202 (359)
T ss_dssp CCCHHHHHTC-SS-CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEE
T ss_pred CcCHHHHHhc-cC-CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEE
Confidence 79999988 55 59999999999998 798886655 999999999999999865322 112233578999
Q ss_pred EECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCc--cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 009172 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGAL--NPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPK 429 (541)
Q Consensus 352 v~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~--s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~ 429 (541)
+.|+||+++++. +|+++++++++++++.....++... ....+..+...++....++++..++++++.+.|+++|+
T Consensus 203 ~~s~sK~~~~~~---gg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~l~~~L~~~~g 279 (359)
T 3pj0_A 203 YVSFYKGIGGIA---GAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSG 279 (359)
T ss_dssp EEESSSTTCCSS---CEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHTSTT
T ss_pred EEeccccCCCcc---eEEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCC
Confidence 999999998774 5889999999999887655444322 12222223345555556677778889999999998877
Q ss_pred ceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHH
Q 009172 430 VKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 508 (541)
Q Consensus 430 v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~ 508 (541)
+.....|. .++++++.++... .....+.+.|...++.+..|..+.. +
T Consensus 280 ~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~GV~v~~g~~~~~---~------------- 327 (359)
T 3pj0_A 280 VKTVPEVP----------------VSNMFHVYFENSADEIGAILTKIQDETGVGISGYLQEKS---A------------- 327 (359)
T ss_dssp EEEESSSC----------------SSSEEEEEESSCHHHHHHHHHHHHHHHCEECCSCCEEEE---T-------------
T ss_pred ceeeccCC----------------cceEEEEEecCccchhHHHHHHHHHhcCcEecCCccccC---C-------------
Confidence 64322332 4678888886432 3355666777666777776643211 1
Q ss_pred HhcCCCCCeEEEEecCC----CHHHHHHHHH
Q 009172 509 LKYGIMDNLVRFSFGVE----DFEDLKADVL 535 (541)
Q Consensus 509 ~~~gi~~~~IRlSvG~E----d~edli~dL~ 535 (541)
..+++|++++.. +.+++.+.++
T Consensus 328 -----~~~~~r~~i~~~~~~~~~e~l~~~l~ 353 (359)
T 3pj0_A 328 -----DVCAFEVSVGDAFAEIPAKNLELVFR 353 (359)
T ss_dssp -----TEEEEEEECCTTGGGSCHHHHHHHHH
T ss_pred -----CceEEEEEecCccccCCHHHHHHHHH
Confidence 246899999854 3444444443
No 83
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.93 E-value=9.8e-25 Score=229.13 Aligned_cols=294 Identities=16% Similarity=0.194 Sum_probs=199.9
Q ss_pred CCCCch-hHHHHHHHHHHHhC------C---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 009172 205 GRYGNP-TTVVVEEKMSALEG------A---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (541)
Q Consensus 205 ~R~~~p-~~~~Le~~LA~l~g------~---~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~G 274 (541)
.+|+.+ ...+++++++++++ . ++++++++|++|+.+++.+++++||+|+++.+.|+++... +...|
T Consensus 55 ~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g 130 (410)
T 3e2y_A 55 NQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPM----VRMAG 130 (410)
T ss_dssp GSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTT
T ss_pred cCCCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHH----HHHcC
Confidence 344443 35678888888765 2 4567777777999999999999999999999999987643 34457
Q ss_pred cEEEEeCC----------------CCHHHHHHhccCCCeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEEcCC
Q 009172 275 ITATVIDP----------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 275 i~v~~vd~----------------~dle~Le~ai~~~~tklV~lesp~NPtG~v~---di~~Ia~la~~~gillvvDea~ 335 (541)
.++..++. .|++++++++++ ++++|++++|+||||.++ ++++|+++|+++|+++|+|++|
T Consensus 131 ~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~ 209 (410)
T 3e2y_A 131 AVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVY 209 (410)
T ss_dssp CEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT
T ss_pred CEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhh
Confidence 77766653 389999999987 599999999999999996 5889999999999999999998
Q ss_pred CCCCcc-----ccc----ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-
Q 009172 336 ATPLNQ-----KAL----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT- 405 (541)
Q Consensus 336 a~~~~~-----~~l----~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t- 405 (541)
...... ... ..+.++++.|+||.++.+| ...|++++++++++.++..........++...+++...++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 288 (410)
T 3e2y_A 210 EWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTG-WKLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFWID 288 (410)
T ss_dssp TTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGG-GCCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCC-ceEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHHhh
Confidence 753211 111 1245599999999998555 45789999999999888766554555566666555555542
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CH------
Q 009172 406 ----------LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DL------ 466 (541)
Q Consensus 406 ----------l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g---~~------ 466 (541)
+....++..++++.+.+.|+++ ++. +..|. .|.++++++.. +.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 350 (410)
T 3e2y_A 289 IKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLK-PIVPD----------------GGYFIIADVSSLGADLSDMNSD 350 (410)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCE-EEBCS----------------BSSEEEEECGGGCCCCTTCCSS
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCe-ecCCC----------------ccEEEEEEchhhhccccccccc
Confidence 4455566677888888999876 443 22332 46678887753 00
Q ss_pred -HHHHHHHHH-cCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 467 -TATIKFIDA-LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 467 -~~~~~~l~~-L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.....+... ++..++.++.|+.+.. +. ... ...++||||++. +++.++...+.|.+
T Consensus 351 ~~~~~~~~~~ll~~~gv~v~~g~~f~~---~~-------~~~------~~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 351 EPYDYKFVKWMTKHKKLTAIPVSAFCD---SK-------SKP------HFEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp CCHHHHHHHHHHHHHSEECEEGGGGSC---TT-------THH------HHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHcCEEEeCchhhCC---CC-------CCC------CCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 011233332 2334677776654321 00 000 025899999997 34444445455543
No 84
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=4.8e-25 Score=228.94 Aligned_cols=277 Identities=12% Similarity=0.055 Sum_probs=192.4
Q ss_pred chhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccC-------------CCEEEEcCCCCcchHHHHHhhcccC
Q 009172 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPA-------------GGHIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~-------------GD~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
.+..+++++++++++|.+ +.+++++|++|+.+++.++..+ ||+|+++.++|+++...+ ...
T Consensus 68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~ 143 (397)
T 3f9t_A 68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGR----EMM 143 (397)
T ss_dssp HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEECCcchhHHHHHH----HHc
Confidence 445678899999999874 4578888889999999988776 999999999999866443 345
Q ss_pred CcEEEEeCCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc--------
Q 009172 274 GITATVIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-------- 340 (541)
Q Consensus 274 Gi~v~~vd~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-------- 340 (541)
|++++.++.+ |+++|++++++.++++|++++|+||||.+.|+++|.++|++||+++|+|++|+.+..
T Consensus 144 g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~ 223 (397)
T 3f9t_A 144 DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYK 223 (397)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGC
T ss_pred CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccc
Confidence 8888888764 899999999862489999999999999999999999999999999999999874321
Q ss_pred -------ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhc---------CCC--ccHHHHHHHHHh
Q 009172 341 -------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVL---------GGA--LNPNAAYLIIRG 402 (541)
Q Consensus 341 -------~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~---------g~~--~s~~~a~l~l~~ 402 (541)
..... ++|+++.|++|+++++.. +|++++.++.+.+.++.....+ +.. .+....+.++..
T Consensus 224 ~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 301 (397)
T 3f9t_A 224 KKGVNYKFDFSL-GVDSITIDPHKMGHCPIP-SGGILFKDIGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRY 301 (397)
T ss_dssp CTTCCCCCSGGG-TCSEEECCTTTTTCCCSS-CEEEEESSGGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHH
T ss_pred cccccccccccc-cCCeEEEccccccCCCCC-ceEEEEeCHHHHHhhccCCccccCCCccccccccccchHHHHHHHHHH
Confidence 11223 889999999999966542 3444445555554442211111 111 133344444433
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009172 403 M--KTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 480 (541)
Q Consensus 403 l--~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ 480 (541)
+ ..+..+.++..++++++.+.|+++ ++..+ .+ ..+++++|.+++ ...+.+.|...+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~----------------~~~~~~~~~~~~----~~~~~~~l~~~g 359 (397)
T 3f9t_A 302 LGREGQRKIVNECMENTLYLYKKLKEN-NFKPV-IE----------------PILNIVAIEDED----YKEVCKKLRDRG 359 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBS-SC----------------CSSSEEEEECTT----HHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEE-cC----------------CCccEEEEEeCC----HHHHHHHHHhCC
Confidence 3 344566777778889999999886 43212 11 136788888864 234444444445
Q ss_pred eeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 481 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 481 iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+.+..|. .++.|||+++...+++.++.+.++|+
T Consensus 360 i~v~~~~--------------------------~~~~~Ri~~~~~~~~e~i~~~~~~l~ 392 (397)
T 3f9t_A 360 IYVSVCN--------------------------CVKALRIVVMPHIKREHIDNFIEILN 392 (397)
T ss_dssp CBCEECS--------------------------SSSEEEEECCTTCCHHHHHHHHHHHH
T ss_pred eEEeccC--------------------------CCCEEEEEEcCCCCHHHHHHHHHHHH
Confidence 5444332 14789999997655555555555554
No 85
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.93 E-value=2.1e-24 Score=231.34 Aligned_cols=287 Identities=15% Similarity=0.116 Sum_probs=199.2
Q ss_pred hhHHHHHHHHHHHh----CC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 210 PTTVVVEEKMSALE----GA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~----g~---~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
+...+|+++|++++ |. ++++++++|++|+.+++.+++++||+|+++.|+|.+.... +...|.++..++.
T Consensus 118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~----~~~~g~~~~~v~~ 193 (448)
T 3aow_A 118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQA----FNFYEPQYIQIPL 193 (448)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEecc
Confidence 34678888888888 75 4566666777999999999999999999999999986643 3446777777654
Q ss_pred ----CCHHHHHHhcc----C-CCeeEEE-EeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----ccc
Q 009172 283 ----ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (541)
Q Consensus 283 ----~dle~Le~ai~----~-~~tklV~-lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~l 344 (541)
.|+++|+++++ + .++++|+ +++|+||||.+++ +++|.++|++||++||+|++|...... ...
T Consensus 194 ~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~ 273 (448)
T 3aow_A 194 DDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIK 273 (448)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTG
T ss_pred CCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHH
Confidence 37999999987 4 2589985 6899999999998 458999999999999999998764321 111
Q ss_pred c---cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHH
Q 009172 345 S---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNS 415 (541)
Q Consensus 345 ~---~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~ 415 (541)
. .+.++++.|+||.++ +| ...|++++++++++.+...........++...+++...++. +....+...+
T Consensus 274 ~~~~~~~vi~~~S~SK~~~-~G-lriG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~ 351 (448)
T 3aow_A 274 ALDNEGRVIYLGTFSKILA-PG-FRIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKP 351 (448)
T ss_dssp GGCTTSCEEEEEESTTTTC-GG-GCCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEccchhhcc-cc-ccEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 2 256799999999998 44 45799999999998887655443333455555554444432 3333444557
Q ss_pred HHHHHHHHHHh-CC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccee
Q 009172 416 TALRMAEILEA-HP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD 493 (541)
Q Consensus 416 na~~la~~L~~-~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~ 493 (541)
+++.+.+.|++ .| .+. +..|. .|.+++++++.+. ...++.+.|...++.+..|..+..
T Consensus 352 ~~~~l~~~L~~~~~~g~~-~~~p~----------------~g~~~~v~~~~~~-~~~~l~~~l~~~gV~v~pg~~f~~-- 411 (448)
T 3aow_A 352 RRDAMLEALEEFMPEGVK-WTKPE----------------GGMFIWVTLPDGI-DSKKMLERAIKKGVAYVPGEAFYA-- 411 (448)
T ss_dssp HHHHHHHHHHHHCCTTCE-ECCCS----------------BSSEEEEECSTTC-CHHHHHHHHHHTTEECEEGGGGST--
T ss_pred HHHHHHHHHHHhCCCCeE-EeCCC----------------ccEEEEEEcCCCC-CHHHHHHHHHHCCcEEEcchhhcC--
Confidence 77888888876 35 343 22221 4678899997421 234555555444777666543211
Q ss_pred cCcccccccCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009172 494 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 539 (541)
Q Consensus 494 ~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E---d~edli~dL~~AL~ 539 (541)
.+..+++||||++.. +.++.++.|.++++
T Consensus 412 -----------------~~~~~~~iRls~~~~~~e~i~~~~~~L~~~l~ 443 (448)
T 3aow_A 412 -----------------HRDVKNTMRLNFTYVDEDKIMEGIKRLAETIK 443 (448)
T ss_dssp -----------------TCCCCSEEEEECSSSCTHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 011357999999863 45666666666665
No 86
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.93 E-value=9.3e-25 Score=228.02 Aligned_cols=292 Identities=14% Similarity=0.122 Sum_probs=200.5
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
|+....+..+++++.+++++|.+ .++++++|++|+.+++.+++++||+|+++.++|++. .+...++..|.++..+
T Consensus 61 ~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~~~~~--~~~~~~~~~g~~~~~v 138 (393)
T 1vjo_A 61 LDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGN--RLVDMAGRYGADVRTI 138 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHH--HHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCChhHH--HHHHHHHHcCCceEEE
Confidence 43333467889999999999974 356667778999999999999999999999999872 1223455668888877
Q ss_pred CC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-cccccccCCcEEEEC
Q 009172 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS 354 (541)
Q Consensus 281 d~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-~~~~l~~gaDivv~S 354 (541)
+. .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+. .......++|+++.|
T Consensus 139 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s 218 (393)
T 1vjo_A 139 SKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSC 218 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECC
T ss_pred ecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEc
Confidence 63 589999999976238999999999999999999999999999999999999987432 122234578999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHH----h----------------hhcCCCccHHHHHHHHHhHHHH-----HHH
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNL----H----------------HVLGGALNPNAAYLIIRGMKTL-----HLR 409 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~----~----------------~~~g~~~s~~~a~l~l~~l~tl-----~~r 409 (541)
+||++++++ ..|++++++++++.++.. . ....++.++...+.+...++.+ ...
T Consensus 219 ~sK~l~~~~--~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~ 296 (393)
T 1vjo_A 219 SQKGLGCSP--GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANC 296 (393)
T ss_dssp SSSTTCSCS--SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CcccccCCC--ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHH
Confidence 999998776 258999999888877431 0 0111145555555444555443 344
Q ss_pred HHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCc
Q 009172 410 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGC 488 (541)
Q Consensus 410 ~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~G~~ 488 (541)
.++..++++.+.+.|++. ++. +..|. ++ ..+++++|.++.+ .....+.+.|... ++.+..|..
T Consensus 297 ~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~ 360 (393)
T 1vjo_A 297 WQRHQKNVEYLWERLEDI-GLS-LHVEK-----EY--------RLPTLTTVCIPDG-VDGKAVARRLLNEHNIEVGGGLG 360 (393)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCC-BSSCG-----GG--------BCSSEEEEECCTT-CCHHHHHHHHHHHHCEECEECCG
T ss_pred HHHHHHHHHHHHHHHHHc-CCc-ccCCc-----cc--------cCCcEEEEEcCCC-CCHHHHHHHHHhhCCEEEecCcc
Confidence 566678888888888875 332 21110 10 1457889988632 1234555655544 666665542
Q ss_pred ccceecCcccccccCCHHHHHhcCCCCCeEEEE-ecCCCHHHHHHHHHHHH
Q 009172 489 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS-FGVEDFEDLKADVLQAL 538 (541)
Q Consensus 489 ~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlS-vG~Ed~edli~dL~~AL 538 (541)
+. .++.+||| ++..+.++.++.+.++|
T Consensus 361 ~~-----------------------~~~~iRis~~~~~~~~~~i~~~~~~l 388 (393)
T 1vjo_A 361 EL-----------------------AGKVWRVGLMGFNSRKESVDQLIPAL 388 (393)
T ss_dssp GG-----------------------TTTEEEEECCGGGCSHHHHHHHHHHH
T ss_pred cc-----------------------CCCEEEEeCCccCChHHHHHHHHHHH
Confidence 10 25789999 46444443344444443
No 87
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.93 E-value=1.3e-24 Score=226.72 Aligned_cols=289 Identities=10% Similarity=0.023 Sum_probs=195.8
Q ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-----
Q 009172 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----- 282 (541)
+...++++++++++|.+ ..+++++|++|+.+++.+++++||+|+++.++|++.. +...++..|.++..++.
T Consensus 42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~ 119 (392)
T 2z9v_A 42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVVLNLASGVYGKG--FGYWAKRYSPHLLEIEVPYNEA 119 (392)
T ss_dssp HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHHCSCEEEEECCTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcCCCCEEEEecCCcccHH--HHHHHHHcCCceEEeeCCCCCC
Confidence 45789999999999974 5666677889999999999999999999999998763 22344455777777754
Q ss_pred CCHHHHHHhccC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCccccC
Q 009172 283 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFIG 360 (541)
Q Consensus 283 ~dle~Le~ai~~-~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK~lg 360 (541)
.|+++|++++++ .++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+||+++
T Consensus 120 ~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~ 199 (392)
T 2z9v_A 120 IDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLG 199 (392)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTC
T ss_pred CCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCccccc
Confidence 479999999942 2589999999999999999999999999999999999999875432 23334578999999999766
Q ss_pred CCCCceEEEEEeChHHHHHHHHHh--------------------hhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHH
Q 009172 361 GHNDVLAGSISGSGKLVTQIRNLH--------------------HVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNS 415 (541)
Q Consensus 361 g~g~v~gG~vv~~~~li~~l~~~~--------------------~~~g~~~s~~~a~l~l~~l~t-----l~~r~~~~~~ 415 (541)
++.+ .|+++++++++++++... ....++.+......+...++. +....++..+
T Consensus 200 ~~~g--~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~ 277 (392)
T 2z9v_A 200 APPG--LTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHAL 277 (392)
T ss_dssp CCSC--CEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCCc--eeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 5432 389999998888776421 011223344333322333333 3344566667
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcccceec
Q 009172 416 TALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIVDQ 494 (541)
Q Consensus 416 na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~G~~~sl~~~ 494 (541)
+++++.+.|++. ++. +..|. +. ...+++++|.++.+ .....+.+.|... ++.+..|...
T Consensus 278 ~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~-~~~~~l~~~L~~~~gi~v~~g~~~----- 337 (392)
T 2z9v_A 278 TAKAMRAGVTAM-GLS-VWAAS----DS--------IASPTTTAVRTPDG-VDEKALRQAARARYGVVFSSGRGE----- 337 (392)
T ss_dssp HHHHHHHHHHHT-TCC-BSSSS----GG--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECEECCGG-----
T ss_pred HHHHHHHHHHHc-CCe-eccCC----cc--------ccCCceEEEECCCC-CCHHHHHHHHHhcCCEEEecCCCC-----
Confidence 788888888875 332 21111 00 01467889998632 1234455555443 6666554310
Q ss_pred CcccccccCCHHHHHhcCCCCCeEEEEe-cC----CCHHHHHHHHHHHHhh
Q 009172 495 PAIMSYWDLSQSERLKYGIMDNLVRFSF-GV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 495 pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~----Ed~edli~dL~~AL~~ 540 (541)
..++.||||+ +. ++.+.+++.|.+++++
T Consensus 338 ------------------~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~ 370 (392)
T 2z9v_A 338 ------------------TLGKLTRIGHMGPTAQPIYAIAALTALGGAMNA 370 (392)
T ss_dssp ------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCeEEEeCcccccCHHHHHHHHHHHHHHHHH
Confidence 1257899994 62 3445566666666543
No 88
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.93 E-value=5.9e-25 Score=230.05 Aligned_cols=205 Identities=22% Similarity=0.202 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHH
Q 009172 212 TVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGL 288 (541)
Q Consensus 212 ~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~L 288 (541)
.+++++.+++++|. +++++++||++|+.+++.++ +||+|+++.++|+++...+. .++..|++++++ .|++++
T Consensus 60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~-~~~~~g~~~~~v--~d~~~l 134 (374)
T 2aeu_A 60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIER-SCKIVNAKYFES--DKVGEI 134 (374)
T ss_dssp HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHH-HHHHTTCEEEEE--SCHHHH
T ss_pred HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHH-HHHHcCcEEEEe--CCHHHH
Confidence 45677777788898 67889999999999999987 99999999999988766554 556679998888 689999
Q ss_pred HHhccCCCeeE-EEEeCCCCCCC-cccCHHHHHHHHHhCCCEEEEEcCCCCCC---ccc--ccccCCcEEEECCccccCC
Q 009172 289 EAALNNNNVSL-FFTESPTNPFL-RCVDVKLVSDLCHKKGAIVCIDGTFATPL---NQK--ALSLGADLVLHSATKFIGG 361 (541)
Q Consensus 289 e~ai~~~~tkl-V~lesp~NPtG-~v~di~~Ia~la~~~gillvvDea~a~~~---~~~--~l~~gaDivv~S~sK~lgg 361 (541)
+++ ++ ++++ |++++|+|||| ...++++|.++|+++|+++|+|++|+..+ ... +...+.|+++.|+||+++|
T Consensus 135 ~~~-~~-~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g 212 (374)
T 2aeu_A 135 LNK-ID-KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEG 212 (374)
T ss_dssp HTT-CC-TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSS
T ss_pred Hhc-CC-CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccC
Confidence 988 65 5999 99999999999 88999999999999999999999987643 112 4556889999999999987
Q ss_pred CCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH-HHHHHHHHHHHH----HHHHHh
Q 009172 362 HNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL-RVQQQNSTALRM----AEILEA 426 (541)
Q Consensus 362 ~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~-r~~~~~~na~~l----a~~L~~ 426 (541)
. .+|+++++++++++++.....++...++..++++..+++.+.. +++++.+++..+ .+.|.+
T Consensus 213 ~---~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 279 (374)
T 2aeu_A 213 P---RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNK 279 (374)
T ss_dssp C---SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred c---ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 3799999999999988877667777788888877778877644 666777777666 465544
No 89
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.93 E-value=9.2e-25 Score=230.28 Aligned_cols=284 Identities=10% Similarity=0.066 Sum_probs=196.9
Q ss_pred hhHHHHHHHHHHHh----CC-----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 210 PTTVVVEEKMSALE----GA-----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 210 p~~~~Le~~LA~l~----g~-----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
+...+|+++||+++ |. +..+++++|++|+.+++.+++++||+|+++.++|++....+ ...|.++..+
T Consensus 85 ~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~v 160 (404)
T 2o1b_A 85 HGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGV----LLADGKPVPL 160 (404)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHH----HHTTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHCCCEEEEe
Confidence 34678888888887 75 35666677779999999999999999999999999976443 3457777766
Q ss_pred CC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----cccccc-
Q 009172 281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSL- 346 (541)
Q Consensus 281 d~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~l~~- 346 (541)
+. .|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|..+.. ......
T Consensus 161 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 239 (404)
T 2o1b_A 161 NLEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASE 239 (404)
T ss_dssp ECCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGST
T ss_pred ccCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcC
Confidence 53 367888888875 4999999999999999986 67899999999999999999876432 112222
Q ss_pred ---CCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHH
Q 009172 347 ---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALR 419 (541)
Q Consensus 347 ---gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~ 419 (541)
+.++++.|+||+++.+| ...|++++++++++.++..........++...+.+...++. +....++..++++.
T Consensus 240 ~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~ 318 (404)
T 2o1b_A 240 NGKDVAIEIYSLSKGYNMSG-FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDR 318 (404)
T ss_dssp THHHHEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecchhccCch-hheEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 45799999999998555 34688999999999888766655555666666555555544 34444556677888
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecCccc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~~ 498 (541)
+.+.|+++ ++. +..|. .|.+++++++.+. ...++.+.|. ..++.+..|..+..
T Consensus 319 l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~-~~~~l~~~l~~~~gi~v~~g~~f~~------- 372 (404)
T 2o1b_A 319 FEAMLAKA-DLP-FVHAK----------------GGIYVWLETPPGY-DSEQFEQFLVQEKSILVAPGKPFGE------- 372 (404)
T ss_dssp HHHHHHHT-TCC-EECCC----------------BSSEEEEECCTTC-CHHHHHHHHHHHHCEECEESGGGCG-------
T ss_pred HHHHHHhc-CCe-ecCCC----------------cceEEEEeCCCCC-CHHHHHHHHHHHCCEEEeCchhhCc-------
Confidence 88888876 342 22111 3446888886321 2234444432 34666665543210
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH 539 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~ 539 (541)
..++.||||++. |+.++.++.|.++++
T Consensus 373 --------------~~~~~iRis~~~~~e~l~~~l~~l~~~l~ 401 (404)
T 2o1b_A 373 --------------NGNRYVRISLALDDQKLDEAAIRLTELAY 401 (404)
T ss_dssp --------------GGTTEEEEECCSCTTHHHHHHHHHHGGGG
T ss_pred --------------CCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 025789999996 233444444444443
No 90
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.93 E-value=2.1e-24 Score=225.23 Aligned_cols=284 Identities=12% Similarity=0.131 Sum_probs=196.7
Q ss_pred hHHHHHHHHHHHh----CC----Cc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALE----GA----ES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...++++++++++ |. ++ ++++++|++|+.+++.+++++||+|++++++|++....+ ...|.++..++
T Consensus 64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~v~ 139 (389)
T 1gd9_A 64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAV----ILAGGKPVEVP 139 (389)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHH----HHHTCEEEEEE
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHH----HHCCCEEEEec
Confidence 4567888888877 72 46 778888889999999999999999999999999976433 34577777765
Q ss_pred C-------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----cccc-
Q 009172 282 P-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KALS- 345 (541)
Q Consensus 282 ~-------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~l~- 345 (541)
. .|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..+... ....
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~ 218 (389)
T 1gd9_A 140 TYEEDEFRLNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASL 218 (389)
T ss_dssp CCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cCCccCCCCCHHHHHHhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhc
Confidence 2 278999999987 5999999999999999985 889999999999999999998764321 1112
Q ss_pred ---cCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHH
Q 009172 346 ---LGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNST 416 (541)
Q Consensus 346 ---~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~n 416 (541)
.+.|+++.|+||.++.+| ...|++++++++++.++..........++...+.+...++. +....++..++
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (389)
T 1gd9_A 219 DGMFERTITVNGFSKTFAMTG-WRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRR 297 (389)
T ss_dssp TTCGGGEEEEEESTTTTTCGG-GCCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEecChhhcCCcc-cceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 357899999999998555 34689999999998888766544445566555544444432 33444556677
Q ss_pred HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecC
Q 009172 417 ALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 417 a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~p 495 (541)
++.+.+.|+++ ++. +..| ..|.+++++++.......++.+.|. ..++.+..|..+..
T Consensus 298 ~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~---- 355 (389)
T 1gd9_A 298 RKLVWKRLNEM-GLP-TVKP----------------KGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK---- 355 (389)
T ss_dssp HHHHHHHHHHT-TCC-CCCC----------------CBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG----
T ss_pred HHHHHHHHHHc-CCe-ecCC----------------CeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC----
Confidence 88888888876 332 1111 1344677777520012345555554 45666665533210
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.||||++.. +.++.++.|.++++
T Consensus 356 -----------------~~~~~iRi~~~~~~~~i~~~l~~l~~~~~ 384 (389)
T 1gd9_A 356 -----------------AGEGYVRISYATAYEKLEEAMDRMERVLK 384 (389)
T ss_dssp -----------------GGTTBEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 0257899999962 23344455555554
No 91
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.93 E-value=5.4e-24 Score=225.88 Aligned_cols=288 Identities=12% Similarity=0.095 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHhCCC----------cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 212 TVVVEEKMSALEGAE----------STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 212 ~~~Le~~LA~l~g~~----------~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
.+++.+.+++..|.+ +.|+ ++++++|+.+++.+++++||+|+++.|+|.+... .++..|.++..+
T Consensus 84 r~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~----~~~~~g~~~~~v 159 (425)
T 2r2n_A 84 LSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQ----SLHPLGCNIINV 159 (425)
T ss_dssp HHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHH----HHGGGTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHH----HHHHcCCEEEEe
Confidence 444444554545642 3454 4555699999999999999999999999998653 345568888877
Q ss_pred CC----CCHHHHHHhccC-----------CCeeEEEE-eCCCCCCCcccCHH---HHHHHHHhCCCEEEEEcCCCCCCc-
Q 009172 281 DP----ADMEGLEAALNN-----------NNVSLFFT-ESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN- 340 (541)
Q Consensus 281 d~----~dle~Le~ai~~-----------~~tklV~l-esp~NPtG~v~di~---~Ia~la~~~gillvvDea~a~~~~- 340 (541)
+. .|+++|+++++. .++++|++ .+|+||||.+++.+ +|.++|++||++||+|++|.....
T Consensus 160 ~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~ 239 (425)
T 2r2n_A 160 ASDESGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFN 239 (425)
T ss_dssp CEETTEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS
T ss_pred CcCCCCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCC
Confidence 64 378999998862 24889877 68999999999866 999999999999999999864211
Q ss_pred ----cccc---ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------
Q 009172 341 ----QKAL---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------- 405 (541)
Q Consensus 341 ----~~~l---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------- 405 (541)
.... ..+.++++.|+||.++ +| ...|++++++++++.+.........+.++...+++...++.
T Consensus 240 g~~~~~~~~~~~~~~~i~~~s~SK~~~-~G-lRiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~ 317 (425)
T 2r2n_A 240 KFRVPTFLSMDVDGRVIRADSFSKIIS-SG-LRIGFLTGPKPLIERVILHIQVSTLHPSTFNQLMISQLLHEWGEEGFMA 317 (425)
T ss_dssp SSCCCCTGGGCTTSCEEEEEESTTTTC-ST-TCCEEEEEEHHHHHHHHHHHHTTTCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccccCCCCCEEEEccchhhcc-Cc-cceEEEecCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcccchHHH
Confidence 1111 1245799999999997 54 45789999999999888766555555666665555555543
Q ss_pred -HHHHHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009172 406 -LHLRVQQQNSTALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP 483 (541)
Q Consensus 406 -l~~r~~~~~~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iav 483 (541)
+....++..++++.+.+.|++ .|++..+..|. .|.++++++++.......+.+.+...++.+
T Consensus 318 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~----------------~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v 381 (425)
T 2r2n_A 318 HVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPA----------------AGMFLWIKVKGINDVKELIEEKAVKMGVLM 381 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCS----------------BSSEEEEEETTCSCCHHHHHTHHHHTTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCC----------------ceEEEEEEeCCCCCHHHHHHHHHHHCCcEE
Confidence 222334445677777888877 45553333332 577899999752111111233444457777
Q ss_pred cCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009172 484 SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 539 (541)
Q Consensus 484 S~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E---d~edli~dL~~AL~ 539 (541)
..|..+.. + .+...++||||++.. +.++.++.|.++++
T Consensus 382 ~pg~~f~~---~---------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 422 (425)
T 2r2n_A 382 LPGNAFYV---D---------------SSAPSPYLRASFSSASPEQMDVAFQVLAQLIK 422 (425)
T ss_dssp EEGGGGSS---S---------------TTSCCCEEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred echhhhcC---C---------------CCCCCCEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 66644321 0 001257999999832 34555566666654
No 92
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.93 E-value=7.4e-25 Score=229.75 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=198.3
Q ss_pred hhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----C
Q 009172 210 PTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A 283 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----~ 283 (541)
+...+|+++|++++|. ++.+++++|++|+.+++.+++++||+|+++.++|++.... +...|.++..++. .
T Consensus 74 ~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~~~~~ 149 (397)
T 2zyj_A 74 EGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQA----FRLQGPRFLTVPAGEEGP 149 (397)
T ss_dssp TCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTCCEEEEEEEETTEE
T ss_pred CCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEecCcCCCCC
Confidence 3578999999999986 3456666667999999999999999999999999986643 3446777777653 3
Q ss_pred CHHHHHHhccCCCeeEEE-EeCCCCCCCcccCHH---HHHHHHHhCCCEEEEEcCCCCCCc-----cccccc------CC
Q 009172 284 DMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-----QKALSL------GA 348 (541)
Q Consensus 284 dle~Le~ai~~~~tklV~-lesp~NPtG~v~di~---~Ia~la~~~gillvvDea~a~~~~-----~~~l~~------ga 348 (541)
|+++|++++++.++++|+ +++|+||||.++|.+ +|.++|+++|+++|+|++|..+.. .....+ +.
T Consensus 150 d~~~l~~~l~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~ 229 (397)
T 2zyj_A 150 DLDALEEVLKRERPRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPG 229 (397)
T ss_dssp CHHHHHHHHHHCCCSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCC
T ss_pred CHHHHHHHHhhcCCeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCe
Confidence 799999998753488884 689999999999855 899999999999999999876432 111222 34
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~-----tl~~r~~~~~~na~~la~~ 423 (541)
++++.|+||+++ +| ...|++++++++++.++.....+....++...+.+...++ .+....++..++++.+.+.
T Consensus 230 ~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (397)
T 2zyj_A 230 VIYLGSFSKVLS-PG-LRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHA 307 (397)
T ss_dssp EEEEEESTTTTC-GG-GCCEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccc-cc-ceeEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999 44 4579999999998888765543332335555555444443 2334445556777888888
Q ss_pred HHh-CC-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccc
Q 009172 424 LEA-HP-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 501 (541)
Q Consensus 424 L~~-~p-~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~ 501 (541)
|++ .| ++. +..|. .|.+++++++.+ ....++.+.|...++.+..|..+..
T Consensus 308 L~~~~~~g~~-~~~~~----------------~g~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~f~~---------- 359 (397)
T 2zyj_A 308 LDREVPKEVR-YTRPK----------------GGMFVWMELPKG-LSAEGLFRRALEENVAFVPGGPFFA---------- 359 (397)
T ss_dssp HHHHSCTTSE-ECCCS----------------BSSEEEEECSTT-CCHHHHHHHHHHTTEEEEESGGGCT----------
T ss_pred HHHHCCCCeE-EccCC----------------ccEEEEEEcCCC-CCHHHHHHHHHHCCCEEechHHhcC----------
Confidence 876 35 343 22221 467899998642 1234555555545777766543211
Q ss_pred cCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009172 502 DLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 539 (541)
Q Consensus 502 ~~~~~~~~~~gi~~~~IRlSvG~E---d~edli~dL~~AL~ 539 (541)
.+..++.||||++.. +.++.++.|.++++
T Consensus 360 ---------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 391 (397)
T 2zyj_A 360 ---------NGGGENTLRLSYATLDREGIAEGVRRLGRALK 391 (397)
T ss_dssp ---------TSCCTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 011357999999974 34555666666554
No 93
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.93 E-value=1.6e-24 Score=226.84 Aligned_cols=279 Identities=14% Similarity=0.140 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g----~~~~i~~sSG~~Ai~~al~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...+|+++|++++ | .++.+++++|++|+.+++.+++++| |+|+++.|+|.+.... +...|.++..++
T Consensus 77 g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~----~~~~g~~~~~v~ 152 (398)
T 3ele_A 77 GDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF----VNAAGARLVEVP 152 (398)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHH----HHHTTCEEEEEC
T ss_pred CcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHH----HHHcCCEEEEEe
Confidence 3456666666654 4 2467777778899999999999999 9999999999986543 445688888886
Q ss_pred CC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHh------CCCEEEEEcCCCCCCcc-----
Q 009172 282 PA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHK------KGAIVCIDGTFATPLNQ----- 341 (541)
Q Consensus 282 ~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~------~gillvvDea~a~~~~~----- 341 (541)
.+ |+++|++++++ ++++|++++|+||||.+++ +++|+++|++ +|+++|+|++|......
T Consensus 153 ~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~ 231 (398)
T 3ele_A 153 ADTEHFQIDFDALEERINA-HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP 231 (398)
T ss_dssp CCTTTSSCCHHHHHHTCCT-TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC
T ss_pred cCCcCCcCCHHHHHHHhCc-CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC
Confidence 43 89999999987 5999999999999999998 6677788998 99999999998753321
Q ss_pred -cccccCCcEEEECCccccCCCCCceEEEEEeChHH------HHHHHHHhhhcC-CCccHHHHHHHHHhHHHHHHHHHHH
Q 009172 342 -KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL------VTQIRNLHHVLG-GALNPNAAYLIIRGMKTLHLRVQQQ 413 (541)
Q Consensus 342 -~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~l------i~~l~~~~~~~g-~~~s~~~a~l~l~~l~tl~~r~~~~ 413 (541)
.....+.++++.|+||.++.+| ...|++++++++ .+.+.......+ ...++...+.+...++... ..++.
T Consensus 232 ~~~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~ 309 (398)
T 3ele_A 232 FVTKYYDNTLVCYSYSKSLSLPG-ERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQGATG-DINAY 309 (398)
T ss_dssp CGGGTCSSEEEEEESTTTSSCTT-TCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTTCCC-CHHHH
T ss_pred ChHhhcCCeEEEEehhhcCCCcc-ceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhcCHH-HHHHH
Confidence 1122456799999999998555 346888887763 333333333322 2344455554444443221 23456
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCccccee
Q 009172 414 NSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVD 493 (541)
Q Consensus 414 ~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~ 493 (541)
.++++.+.+.|+++ ++. +..|. .|.++++.+++. ....+.+.|...++.+..|..+.
T Consensus 310 ~~~~~~l~~~L~~~-g~~-~~~~~----------------~~~~~~~~~~~~--~~~~~~~~l~~~gi~v~~g~~~~--- 366 (398)
T 3ele_A 310 KENRDLLYEGLTRI-GYH-CFKPD----------------GAFYMFVKALED--DSNAFCEKAKEEDVLIVAADGFG--- 366 (398)
T ss_dssp HHHHHHHHHHHHHH-TCC-EECCS----------------BSSEEEEECSSS--CHHHHHHHHHTTTEECEESGGGT---
T ss_pred HHHHHHHHHHHHHc-CCe-ecCCC----------------eeEEEEEEcCCC--CHHHHHHHHHHCCEEEeCccccC---
Confidence 67778888888765 232 22221 344588988743 24456666666688777664421
Q ss_pred cCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 494 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 494 ~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
.++.||||++.. +.++.++.|.++++
T Consensus 367 --------------------~~~~iRis~~~~~e~i~~~l~~l~~~l~ 394 (398)
T 3ele_A 367 --------------------CPGWVRISYCVDREMIKHSMPAFEKIYK 394 (398)
T ss_dssp --------------------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 147999999852 33455566666654
No 94
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.93 E-value=1.7e-24 Score=221.93 Aligned_cols=280 Identities=11% Similarity=0.034 Sum_probs=192.7
Q ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-----
Q 009172 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----- 282 (541)
+...+++++|++++|.+ ..+++++|++|+.+++.+++++||+|+++.++|++.. +...+...|.++++++.
T Consensus 34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~~ 111 (352)
T 1iug_A 34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERVLVPVYGKFSER--FYEIALEAGLVVERLDYPYGDT 111 (352)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHTTCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhccCCCCeEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCCCC
Confidence 45789999999999985 4666778889999999999999999999999999865 22345567888888764
Q ss_pred CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEEcCCCCCCc-ccccccCCcEEEECCcccc
Q 009172 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (541)
Q Consensus 283 ~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~--gillvvDea~a~~~~-~~~l~~gaDivv~S~sK~l 359 (541)
.|++++++ + ++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+.. ......++|+++.|+||++
T Consensus 112 ~d~~~l~~---~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 187 (352)
T 1iug_A 112 PRPEDVAK---E-GYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGL 187 (352)
T ss_dssp CCTTTSCC---S-SCSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTT
T ss_pred CCHHHHhc---c-CCcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccc
Confidence 25666655 3 589999999999999999999999999999 999999999864322 2223457899999999966
Q ss_pred CCCCCceEEEEEeChHHHHH---------HHH----H-hhhcCCCccHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q 009172 360 GGHNDVLAGSISGSGKLVTQ---------IRN----L-HHVLGGALNPNAAYLIIRGMKT----LHLRVQQQNSTALRMA 421 (541)
Q Consensus 360 gg~g~v~gG~vv~~~~li~~---------l~~----~-~~~~g~~~s~~~a~l~l~~l~t----l~~r~~~~~~na~~la 421 (541)
+++.+ .|+++.+++++++ ++. . .....++.+......+...++. +....++..++++++.
T Consensus 188 ~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~ 265 (352)
T 1iug_A 188 MCPPG--LGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLY 265 (352)
T ss_dssp CCCSC--EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred cCCCc--eeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65432 4888888887654 221 1 1122234444443333334433 3445566678888888
Q ss_pred HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccc
Q 009172 422 EILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYW 501 (541)
Q Consensus 422 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~ 501 (541)
+.|++. ++. +..|. ..+++++|.++.+ ....++.+.|...++.+..|.. +
T Consensus 266 ~~L~~~-g~~-~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~------~------ 315 (352)
T 1iug_A 266 GVGEEG-GLR-PVPKR---------------FSPAVAAFYLPEG-VPYARVKEAFAQRGAVIAGGQG------P------ 315 (352)
T ss_dssp HHHHHT-TCE-ESCSS---------------BCTTCEEEECCTT-CCHHHHHHHHHTTTEECEECCG------G------
T ss_pred HHHHHC-CCc-ccccc---------------cCCeEEEEEcCCC-CCHHHHHHHHHHCCEEEEeCCC------c------
Confidence 899876 443 32221 1466899998732 1244566666666777665531 0
Q ss_pred cCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009172 502 DLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 538 (541)
Q Consensus 502 ~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL 538 (541)
..++.|||+++..++++.++.+.++|
T Consensus 316 -----------~~~~~iRi~~~~~~~~~~i~~~~~~l 341 (352)
T 1iug_A 316 -----------LKGKVFRLSLMGAYDRYEALGVAGMF 341 (352)
T ss_dssp -----------GTTTEEEECCCSSCCHHHHHHHHHHH
T ss_pred -----------cCCCEEEEEccccCCHHHHHHHHHHH
Confidence 13578999999654444444444443
No 95
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.93 E-value=2.7e-24 Score=223.40 Aligned_cols=278 Identities=15% Similarity=0.127 Sum_probs=194.7
Q ss_pred CCCchhHHHHHHHHHHH------hCC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 206 RYGNPTTVVVEEKMSAL------EGA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l------~g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
+|+++...+++++++++ .+. +..+++++|++++.+++.+++++||+|+++.++|++... .+...|.++
T Consensus 65 ~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l~~~gd~Vl~~~~~y~~~~~----~~~~~g~~~ 140 (369)
T 3cq5_A 65 RYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRTALGFQPSYSMHPI----LAKGTHTEF 140 (369)
T ss_dssp SCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCSTTCEEEEEESSCTHHHH----HHHHTTCEE
T ss_pred cCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHhcCCCCEEEEcCCChHHHHH----HHHHcCCEE
Confidence 34444446899999998 443 345555555699999999999999999999999998654 344567887
Q ss_pred EEeCC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-cccc----ccC
Q 009172 278 TVIDP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL----SLG 347 (541)
Q Consensus 278 ~~vd~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l----~~g 347 (541)
..++. .|+++++++++++++++|++++|+||||.+.|++++.++++.+++++|+|++|..+.. .... ..+
T Consensus 141 ~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 220 (369)
T 3cq5_A 141 IAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYP 220 (369)
T ss_dssp EEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCT
T ss_pred EEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCC
Confidence 77753 3789999998752489999999999999999999999999999999999999875432 1112 235
Q ss_pred -CcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHH
Q 009172 348 -ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 348 -aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~---tl~~r~~~~~~na~~la~~ 423 (541)
.++++.|+||+++.+| ...|++++++++++.++.....+ ..++...+.+...++ .+....++..++++.+.+.
T Consensus 221 ~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 297 (369)
T 3cq5_A 221 TKLVVSRTMSKAFDFAG-GRLGYFVANPAFIDAVMLVRLPY--HLSALSQAAAIVALRHSADTLGTVEKLSVERVRVAAR 297 (369)
T ss_dssp TTEEEEEESSSTTSCGG-GCCEEEEECTHHHHHHHTTSCTT--CSCHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCEEEEEechHhcCCcc-cceEEEEeCHHHHHHHHHcCCCC--CCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999998555 34689999999888887654433 355655555555554 3445556667788888888
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccC
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 503 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~ 503 (541)
|++. ++. +. |. .|++++++++.+ ..++.+.|...++.+..|+
T Consensus 298 L~~~-g~~-~~-~~----------------~~~~~~~~~~~~---~~~l~~~l~~~gi~v~~~~---------------- 339 (369)
T 3cq5_A 298 LEEL-GYA-VV-PS----------------ESNFVFFGDFSD---QHAAWQAFLDRGVLIRDVG---------------- 339 (369)
T ss_dssp HHHH-TCE-EE-CC----------------SSSEEEEECCSS---HHHHHHHHHHTTEECBCCS----------------
T ss_pred HHhC-CCE-EC-CC----------------CCeEEEEECCCC---HHHHHHHHHHCCEEEEECC----------------
Confidence 8763 343 21 21 357889988622 3345555544566655431
Q ss_pred CHHHHHhcCCCCCeEEEEecCC-CHHHHHHHHHHHH
Q 009172 504 SQSERLKYGIMDNLVRFSFGVE-DFEDLKADVLQAL 538 (541)
Q Consensus 504 ~~~~~~~~gi~~~~IRlSvG~E-d~edli~dL~~AL 538 (541)
.++.+|||++.+ +.+.+++.|.+++
T Consensus 340 ----------~~~~iRis~~~~~~i~~~~~~l~~~~ 365 (369)
T 3cq5_A 340 ----------IAGHLRTTIGVPEENDAFLDAAAEII 365 (369)
T ss_dssp ----------CTTEEEEECCCHHHHHHHHHHHHHHH
T ss_pred ----------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 146899999932 3344555555544
No 96
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.93 E-value=6.4e-24 Score=222.69 Aligned_cols=282 Identities=16% Similarity=0.086 Sum_probs=200.0
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dl 285 (541)
..+...+++++||+++|.++.+++++|++++..++..+. .+||+|+++.++|+++...+ +..|++++.++.+|+
T Consensus 89 ~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~d~ 164 (401)
T 2bwn_A 89 TTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI----KRNAGPKRIFRHNDV 164 (401)
T ss_dssp CBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH----HHSCCCEEEECTTCH
T ss_pred ChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH----HHcCCeEEEEcCCCH
Confidence 346789999999999999889999999988777776653 58999999999999876443 446888988988889
Q ss_pred HHHHHhccC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-c------ccc--cCCcEEEE
Q 009172 286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ-K------ALS--LGADLVLH 353 (541)
Q Consensus 286 e~Le~ai~~---~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~-~------~l~--~gaDivv~ 353 (541)
++++++++. .++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+... . ... ...|+++.
T Consensus 165 ~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~ 244 (401)
T 2bwn_A 165 AHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNG 244 (401)
T ss_dssp HHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEE
T ss_pred HHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEe
Confidence 999988861 25899999999999999999999999999999999999998743211 0 011 13589999
Q ss_pred CCccccCCCCCceEEEEEeChHHHHHHHHHhh--hcCCCccHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHh
Q 009172 354 SATKFIGGHNDVLAGSISGSGKLVTQIRNLHH--VLGGALNPNAAYLIIRGMKTL-----HLRVQQQNSTALRMAEILEA 426 (541)
Q Consensus 354 S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~--~~g~~~s~~~a~l~l~~l~tl-----~~r~~~~~~na~~la~~L~~ 426 (541)
|++|.++++| |++++++++++.++.... .+....++..+..+...++.+ ....++..++++++.+.|++
T Consensus 245 s~sK~~~~~G----G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (401)
T 2bwn_A 245 TLAKAYGVFG----GYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA 320 (401)
T ss_dssp ESSSTTCSCC----EEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhccCCC----CEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999654 889999888887765332 222223444444444455433 34456667778888888877
Q ss_pred CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecCcccccccCCH
Q 009172 427 HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQ 505 (541)
Q Consensus 427 ~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~~~~~~~~~ 505 (541)
. ++. +..| .+++++|.++. ......+.+.|. ..++.+..+..+
T Consensus 321 ~-g~~-~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~L~~~~gi~v~~~~~~---------------- 364 (401)
T 2bwn_A 321 L-GMP-IIDH-----------------GSHIVPVVIGD-PVHTKAVSDMLLSDYGVYVQPINFP---------------- 364 (401)
T ss_dssp H-TCC-BCCC-----------------SSSCEEEECCC-HHHHHHHHHHHHHHHCEECCEECTT----------------
T ss_pred C-CCc-ccCC-----------------CCCeEEEEeCC-hHHHHHHHHHHHhcCCEEEeecCCC----------------
Confidence 5 332 1111 24589999864 234556666663 446665543211
Q ss_pred HHHHhcCC--CCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 506 SERLKYGI--MDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 506 ~~~~~~gi--~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+. ..+.||||++..++++.++.+.++|+
T Consensus 365 ------~~~~~~~~iRis~~~~~t~~~i~~~~~~l~ 394 (401)
T 2bwn_A 365 ------TVPRGTERLRFTPSPVHDLKQIDGLVHAMD 394 (401)
T ss_dssp ------TSCTTCCEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ------CCCCCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 11 23689999997666555666665554
No 97
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.93 E-value=5.5e-25 Score=228.76 Aligned_cols=290 Identities=14% Similarity=0.165 Sum_probs=200.7
Q ss_pred chhHHHHHHHHHHHhCCC--c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC---
Q 009172 209 NPTTVVVEEKMSALEGAE--S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~--~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~--- 282 (541)
.+...++++++++++|.+ + .++++||++|+.+++.+++++||+|+++.+.|.+.. +...+...|.++..++.
T Consensus 55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~ 132 (393)
T 3kgw_A 55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMR--AAEIADRIGARVHQMIKKPG 132 (393)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEEECCTT
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHH--HHHHHHHcCCceEEEeCCCC
Confidence 456789999999999974 2 456677889999999999999999999988875432 22445567888887753
Q ss_pred --CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCC-CcccccccCCcEEEECCcccc
Q 009172 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSATKFI 359 (541)
Q Consensus 283 --~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~-~~~~~l~~gaDivv~S~sK~l 359 (541)
.|+++|+++++++++++|++++|+||||.+.|+++|.++|++||+++|+|++++.+ ........++|+++.|+||++
T Consensus 133 ~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~ 212 (393)
T 3kgw_A 133 EHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVL 212 (393)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTT
T ss_pred CCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccc
Confidence 48999999998634999999999999999999999999999999999999998743 233334567899999999987
Q ss_pred CCCCCceEEEEEeChHHHHHHHHHhh--------------hc---------CCCccHHHHHHHHHhHHH-----HHHHHH
Q 009172 360 GGHNDVLAGSISGSGKLVTQIRNLHH--------------VL---------GGALNPNAAYLIIRGMKT-----LHLRVQ 411 (541)
Q Consensus 360 gg~g~v~gG~vv~~~~li~~l~~~~~--------------~~---------g~~~s~~~a~l~l~~l~t-----l~~r~~ 411 (541)
+++.+ .|++++++++++.+..... .+ ..+.+....+.+...++. +....+
T Consensus 213 ~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~ 290 (393)
T 3kgw_A 213 NAPPG--ISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWR 290 (393)
T ss_dssp CCCSS--CEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCCCc--eeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 65432 5889999998888764221 11 123344443333333332 355566
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCccc
Q 009172 412 QQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCES 490 (541)
Q Consensus 412 ~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~G~~~s 490 (541)
+..++++.+.+.|+++ ++. +..|. +. ...+.+++|.++.+ ....++.+.|... ++.+..|...
T Consensus 291 ~~~~~~~~l~~~L~~~-g~~-~~~~~----~~--------~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~- 354 (393)
T 3kgw_A 291 RHREATAHLHKHLQEM-GLK-FFVKD----PE--------IRLPTITTVTVPAG-YNWRDIVSYVLDHFSIEISGGLGP- 354 (393)
T ss_dssp HHHHHHHHHHHHHHHT-TCC-BSSSS----GG--------GBCSSEEEEECCTT-BCHHHHHHHHHHHHCEECBCCCGG-
T ss_pred HHHHHHHHHHHHHHHc-CCe-eccCC----hh--------hcCCeEEEEeCCCC-CCHHHHHHHHHHhCCEEEeCCccc-
Confidence 7778888899999886 332 11111 00 12456788988632 1233455555333 6666655310
Q ss_pred ceecCcccccccCCHHHHHhcCCCCCeEEEEe-cC----CCHHHHHHHHHHHHhh
Q 009172 491 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 491 l~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~----Ed~edli~dL~~AL~~ 540 (541)
..++.|||++ +. ++.+++++.|.+++++
T Consensus 355 ----------------------~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~ 387 (393)
T 3kgw_A 355 ----------------------TEERVLRIGLLGYNATTENVDRVAEALREALQH 387 (393)
T ss_dssp ----------------------GTTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence 1357999998 64 4566677777777654
No 98
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.93 E-value=2.6e-24 Score=224.44 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=198.4
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
|+.+..+..+++++++++++|.+ ..+++++|++|+.+++.+++++||+|+++.++|++.. +...++..|.+++++
T Consensus 46 ~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 123 (393)
T 2huf_A 46 LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVILIGHTGHWGDR--SADMATRYGADVRVV 123 (393)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCEEEEECCCcchHH--HHHHHHHcCCeeEEE
Confidence 44444567899999999999974 2445577789999999999999999999999998842 223445678888887
Q ss_pred CC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEEC
Q 009172 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (541)
Q Consensus 281 d~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S 354 (541)
+. .|+++|++++++.++++|++++|+||||.+.|+++|.++|+++|+++|+|+++..+.. ......++|+++.|
T Consensus 124 ~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s 203 (393)
T 2huf_A 124 KSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTG 203 (393)
T ss_dssp ECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECC
T ss_pred eCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEEC
Confidence 63 4899999999752389999999999999999999999999999999999999764322 22234578999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHHh----h-h---------cC---------CCccHHHHHHHHHhHHH-----H
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH----H-V---------LG---------GALNPNAAYLIIRGMKT-----L 406 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~~----~-~---------~g---------~~~s~~~a~l~l~~l~t-----l 406 (541)
+||+++++.+ .|++++++++++.++... . . ++ ++.+......+...++. +
T Consensus 204 ~sK~l~g~~G--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 281 (393)
T 2huf_A 204 SQKVLGAPPG--ITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGL 281 (393)
T ss_dssp SSSTTCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCcccccCCC--eEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCH
Confidence 9998654332 288888998888876431 0 0 11 12333333322223332 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecC
Q 009172 407 HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSF 485 (541)
Q Consensus 407 ~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~ 485 (541)
....++..++++++.+.|++. ++. +..|. . ...+++++|.++.+ ....++.+.|.. .++.+..
T Consensus 282 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~-----~--------~~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~ 345 (393)
T 2huf_A 282 PALIARHEDCAKRLYRGLQDA-GFE-LYADP-----K--------DRLSTVTTIKVPQG-VDWLKAAQYAMKTYLVEISG 345 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCTTEEEEECCTT-CCHHHHHHHHHHHHCEECBC
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCe-eccCc-----c--------ccCCcEEEEEcCCC-CCHHHHHHHHHHhCCEEEec
Confidence 445566778888888888875 332 21110 0 01345888988622 123345555432 3666665
Q ss_pred CCcccceecCcccccccCCHHHHHhcCCCCCeEEEEe-cCC----CHHHHHHHHHHHHh
Q 009172 486 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVE----DFEDLKADVLQALH 539 (541)
Q Consensus 486 G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~E----d~edli~dL~~AL~ 539 (541)
|..+ ..++.|||++ +.. +.+.+++.|.++++
T Consensus 346 g~~~-----------------------~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~ 381 (393)
T 2huf_A 346 GLGP-----------------------TAGQVFRIGLMGQNATTERVDRVLQVFQEAVA 381 (393)
T ss_dssp CCGG-----------------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred Cccc-----------------------ccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH
Confidence 5321 1257899999 632 35556666666654
No 99
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.93 E-value=2.7e-24 Score=228.00 Aligned_cols=284 Identities=12% Similarity=0.061 Sum_probs=200.3
Q ss_pred CCCch-hHHHHHHHHHHHh-----CC--Cc---EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhccc-C
Q 009172 206 RYGNP-TTVVVEEKMSALE-----GA--ES---TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPK-M 273 (541)
Q Consensus 206 R~~~p-~~~~Le~~LA~l~-----g~--~~---~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~-~ 273 (541)
+|+.+ ...+|+++||+++ +. ++ .+++++|++|+.+++.+++++||+|+++.|+|++... .+.. .
T Consensus 83 ~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~----~~~~~~ 158 (430)
T 2x5f_A 83 PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKL----VFNTRN 158 (430)
T ss_dssp SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHH----HHTTTT
T ss_pred ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHHhCCCCEEEEcCCcCccHHH----HHHHhc
Confidence 34443 4688999999998 65 45 6666667799999999999999999999999998653 3445 6
Q ss_pred CcEEEEeCC------CCHHHHHHhccCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHh-----CCCEEEEEcCCCC
Q 009172 274 GITATVIDP------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHK-----KGAIVCIDGTFAT 337 (541)
Q Consensus 274 Gi~v~~vd~------~dle~Le~ai~~~--~tklV~lesp~NPtG~v~d---i~~Ia~la~~-----~gillvvDea~a~ 337 (541)
|.++..++. .|+++|++++++. ++++|++++|+||||.++| +++|.++|++ +|+++|+|++|..
T Consensus 159 g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~ 238 (430)
T 2x5f_A 159 GANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYG 238 (430)
T ss_dssp CCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred CCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhccc
Confidence 888887763 3688999988751 4899999999999999999 8899999999 9999999999875
Q ss_pred CCcc----cc----c-c-cCC---cEEEECCccccCCCCCceEEEEEe---ChHHHHHHHHHhhh----cCCCccHHHHH
Q 009172 338 PLNQ----KA----L-S-LGA---DLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHV----LGGALNPNAAY 397 (541)
Q Consensus 338 ~~~~----~~----l-~-~ga---Divv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~~~~~~----~g~~~s~~~a~ 397 (541)
+... .+ + . .+. ++++.|+||.++.+|. ..|++++ ++++++.+...... .....++..++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 317 (430)
T 2x5f_A 239 LFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQS 317 (430)
T ss_dssp CBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred ccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHH
Confidence 4221 11 1 1 345 7889999999986653 4688888 88998888765543 33445666666
Q ss_pred HHHHhHH----HHHH---HHHHHHHHHHHHHHHHHhC--C-CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH
Q 009172 398 LIIRGMK----TLHL---RVQQQNSTALRMAEILEAH--P-KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT 467 (541)
Q Consensus 398 l~l~~l~----tl~~---r~~~~~~na~~la~~L~~~--p-~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~ 467 (541)
.+...++ .... ..++..++++.+.+.|+++ + .+. +..| ..|.++++.+++ .
T Consensus 318 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~----------------~~g~~~~~~~~~--~ 378 (430)
T 2x5f_A 318 AVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHSHWQ-AYDF----------------NSGYFMAIKVHD--V 378 (430)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTTEE-ECCC----------------CBSSEEEEEESS--S
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCce-eeCC----------------CceEEEEeCCCC--C
Confidence 6555555 2222 4455567777788888732 1 221 2111 134568999972 1
Q ss_pred HHHHHHHHcCC-CceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHhh
Q 009172 468 ATIKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA 540 (541)
Q Consensus 468 ~~~~~l~~L~~-~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG---~Ed~edli~dL~~AL~~ 540 (541)
....+.+.|.. .++.+..| .++.+|||++ .|+.+++++.|.+++++
T Consensus 379 ~~~~~~~~l~~~~gi~v~~g---------------------------~~~~iRis~~~~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 379 DPEALRKHLIDKYSIGVIAL---------------------------NATDIRIAFSCVEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp CHHHHHHHHHHHHCEECEEC---------------------------SSSEEEEEGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCEEEecC---------------------------CCCeEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 23345555543 45555433 2468999999 35677888888887764
No 100
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.93 E-value=2.3e-24 Score=225.56 Aligned_cols=305 Identities=14% Similarity=0.105 Sum_probs=213.5
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC--
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-- 283 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-- 283 (541)
..++...+||++||+++|.+++++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|.++.+++.+
T Consensus 53 ~~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~~~~gd~vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~ 128 (391)
T 3dr4_A 53 SVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSV----TYCGATPVLVDNDPR 128 (391)
T ss_dssp SCSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTT
T ss_pred CCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCchHHHHHHH----HHCCCEEEEEecCcc
Confidence 357889999999999999999999999999999999999 999999999999999876443 4568888888754
Q ss_pred ----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--CcEEEECCc-
Q 009172 284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT- 356 (541)
Q Consensus 284 ----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aDivv~S~s- 356 (541)
|+++|++++++ ++++|+ |+||||.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|++
T Consensus 129 ~~~~d~~~l~~~~~~-~~~~v~---~~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~di~~~S~s~ 204 (391)
T 3dr4_A 129 TFNLDAAKLEALITP-RTKAIM---PVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFG 204 (391)
T ss_dssp TCSBCGGGSGGGCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECBT
T ss_pred ccCcCHHHHHHhcCC-CceEEE---EECCCCChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecccCCEEEEECCC
Confidence 78999999987 589888 5789999999999999999999999999998865443222222 478888855
Q ss_pred -cccCCCCCceEEEEEeC-hHHHHHHHHHhhhc--------------CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009172 357 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRM 420 (541)
Q Consensus 357 -K~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~--------------g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~l 420 (541)
|++++ + .+|+++.+ +++.+.++...... ...+.+..+.+.+..++.+....++..++++++
T Consensus 205 ~K~l~~-g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l 281 (391)
T 3dr4_A 205 NAIITT-G--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWY 281 (391)
T ss_dssp TSSSCC-B--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCcCCc-C--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99987 3 36777765 45777766543211 123456666665556666677777788888889
Q ss_pred HHHHHhCCCceEEeC--CCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcCCCceeecCCCcccceecCcc
Q 009172 421 AEILEAHPKVKRVHY--PGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALKIPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 421 a~~L~~~p~v~~V~~--Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~ 497 (541)
.+.|.+. ++..... +.-. ...+.++++.++.. .....++.+.|...++.++.|. ..+.+.|..
T Consensus 282 ~~~L~~~-g~~~~~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~l~~~L~~~GI~v~~~~-~p~~~~~~~ 347 (391)
T 3dr4_A 282 EQKLARL-GNRVTKPHVALTG------------RHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVF-HPMHIMPPY 347 (391)
T ss_dssp HHHHGGG-TTSEECCCCCTTS------------CCCCSSEEEEECSSCSSCHHHHHHHHHHTTCCCEECC-CCGGGSGGG
T ss_pred HHHhhcC-CccccCcCCCCCC------------cceeEEEEEEECCccchhHHHHHHHHHHCCCceeecC-CccccChhh
Confidence 9999876 4432221 1100 11334677887641 1123455666655577777553 222333332
Q ss_pred ccc--ccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 498 MSY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 498 ~~~--~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+ ..++.... +..+.|||+++...+++.++.+.++|++
T Consensus 348 ~~~~~~~~~~~~~----~~~~~lrl~~~~~~t~edi~~~~~~l~~ 388 (391)
T 3dr4_A 348 AHLATDDLKIAEA----CGVDGLNLPTHAGLTEADIDRVIAALDQ 388 (391)
T ss_dssp GGGCCTTCHHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHT
T ss_pred hhcCcCCChHHHH----HHhCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 211 11221111 1246899999998888888888888875
No 101
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.93 E-value=8.4e-25 Score=230.05 Aligned_cols=212 Identities=18% Similarity=0.262 Sum_probs=171.0
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-----
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----- 282 (541)
.+...+++++|++++|.++.+++++|++|+.+++.++ +++||+|+++.++|+++... +...|+++.+++.
T Consensus 62 ~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~~~~gd~vl~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~ 137 (399)
T 2oga_A 62 GPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLA----VSATGATPVPVEPHEDHP 137 (399)
T ss_dssp SHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHH----HHHTTCEEEEECBCSSSS
T ss_pred chhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhCCCCcCEEEECCCccHHHHHH----HHHCCCEEEEEecCCCCC
Confidence 4788999999999999988999999999999999999 89999999999999986643 3456888888763
Q ss_pred -CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--CcEEEECC--cc
Q 009172 283 -ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSA--TK 357 (541)
Q Consensus 283 -~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aDivv~S~--sK 357 (541)
.|+++|++++++ ++++|+ |+||||.+.|+++|.++|+++|+++|+|++++.+...+....+ .|+++.|+ +|
T Consensus 138 ~~d~~~l~~~i~~-~~~~v~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~~~sK 213 (399)
T 2oga_A 138 TLDPLLVEKAITP-RTRALL---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGK 213 (399)
T ss_dssp SBCHHHHHHHCCT-TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEETTEETTCTTCEEEEECCTTS
T ss_pred CcCHHHHHHhcCC-CCeEEE---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCccCCeecccccCEEEEeCCCCc
Confidence 279999999987 589887 5789999999999999999999999999999865432322334 69999999 69
Q ss_pred ccCCCCCceEEEEEeC-hHHHHHHHHHhhhc----------C--CCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 009172 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~----------g--~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L 424 (541)
+++++| .+|+++.+ ++++++++...... | ..+++..++++...++.+....++..++++++.+.|
T Consensus 214 ~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~l~~~L 291 (399)
T 2oga_A 214 NLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGL 291 (399)
T ss_dssp SSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcCC--ceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999866 47888775 78888877654321 1 245677777777788777777777778888888888
Q ss_pred HhCCCc
Q 009172 425 EAHPKV 430 (541)
Q Consensus 425 ~~~p~v 430 (541)
++.+++
T Consensus 292 ~~~~g~ 297 (399)
T 2oga_A 292 AGLPGI 297 (399)
T ss_dssp TTCTTC
T ss_pred ccCCCc
Confidence 876654
No 102
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.93 E-value=2.9e-24 Score=225.55 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=199.6
Q ss_pred hHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...++++++++++ |. +..+++++|++|+.+++.+++++||+|+++.++|++.... +...|.++..++.
T Consensus 76 ~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~v~~ 151 (407)
T 2zc0_A 76 GIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLA----FEQLGAKIEGVPV 151 (407)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHH----HHHcCCEEEEccc
Confidence 4678899999888 72 3566666667999999999999999999999999986543 4456888777754
Q ss_pred ----CCHHHHHHhcc----C-CCeeEEE-EeCCCCCCCcccCHH---HHHHHHHhCCCEEEEEcCCCCCCc-c----ccc
Q 009172 283 ----ADMEGLEAALN----N-NNVSLFF-TESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLN-Q----KAL 344 (541)
Q Consensus 283 ----~dle~Le~ai~----~-~~tklV~-lesp~NPtG~v~di~---~Ia~la~~~gillvvDea~a~~~~-~----~~l 344 (541)
.|+++|+++++ + .++++|+ +++|+||||.+.|++ +|.++|+++|+++|+|++|..+.. . ...
T Consensus 152 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 231 (407)
T 2zc0_A 152 DNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLK 231 (407)
T ss_dssp ETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGG
T ss_pred CCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChh
Confidence 37999999987 5 2589874 789999999999976 999999999999999999876432 1 111
Q ss_pred cc---CCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-------HHHHHHHHH
Q 009172 345 SL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT-------LHLRVQQQN 414 (541)
Q Consensus 345 ~~---gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t-------l~~r~~~~~ 414 (541)
.+ +.++++.|+||+++ +| ..+|++++++++++.++......+...++....++...++. +....++..
T Consensus 232 ~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 309 (407)
T 2zc0_A 232 ALDNEGRVIVAGTLSKVLG-TG-FRIGWIIAEGEILKKVLMQKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYK 309 (407)
T ss_dssp GGCSSCCEEEEEESTTTTC-TT-SCCEEEECCHHHHHHHHHHHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHH
T ss_pred hcCCCCCEEEEcccccccC-CC-cceEEEecCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 22 45689999999999 44 35799999999998888766544444455555544444443 222344455
Q ss_pred HHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcccce
Q 009172 415 STALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIV 492 (541)
Q Consensus 415 ~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~G~~~sl~ 492 (541)
++++.+.+.|++ .|.+. +..| ..|.++++.++.+ .....+.+.|... ++.+..|..+..
T Consensus 310 ~~~~~l~~~L~~~~~~~~-~~~~----------------~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~~~~- 370 (407)
T 2zc0_A 310 EKRDIMLKALENHLPNAE-FTKP----------------IAGMFVMFFLPEG-ADGISFANELMEREGVVVVPGKPFYT- 370 (407)
T ss_dssp HHHHHHHHHHHHHCTTSC-BCCC----------------SBSSEEEEECSTT-CCHHHHHHHHHHHTCEECBCSGGGCS-
T ss_pred HHHHHHHHHHHHhCCCCE-EecC----------------CCcEEEEEEcCCC-CCHHHHHHHHHHhCCeEEECchhccC-
Confidence 677788888876 34432 2122 1456899998642 1234455555444 677766643211
Q ss_pred ecCcccccccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHhh
Q 009172 493 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALHA 540 (541)
Q Consensus 493 ~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---Ed~edli~dL~~AL~~ 540 (541)
. +..++.||||++. ++.+.+++.|.+++++
T Consensus 371 ---~---------------~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 403 (407)
T 2zc0_A 371 ---D---------------ESGKNAIRLNFSRPSKEEIPIGIKKLAKLYKE 403 (407)
T ss_dssp ---S---------------SCCTTEEEEECSSSCTTHHHHHHHHHHHHHHH
T ss_pred ---C---------------CCCCCeEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0135799999986 4567777777777754
No 103
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.93 E-value=1.2e-24 Score=230.86 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHh----C---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALE----G---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g---~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...+|+++||+++ | . +..+++++|++|+.+++.+++++||+|+++.|+|+++... +...|.++..++
T Consensus 86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~v~ 161 (425)
T 1vp4_A 86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINA----FRQYLANFVVVP 161 (425)
T ss_dssp CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHTTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH----HHHcCCEEEEec
Confidence 4678888888888 7 3 3455666667999999999999999999999999986643 344677777765
Q ss_pred C----CCHHHHHHhccC-------CCeeEEE-EeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----c
Q 009172 282 P----ADMEGLEAALNN-------NNVSLFF-TESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----Q 341 (541)
Q Consensus 282 ~----~dle~Le~ai~~-------~~tklV~-lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~ 341 (541)
. .|+++|++++++ .++++|+ +++|+||||.++| +++|.++|+++|+++|+|++|..+.. .
T Consensus 162 ~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~ 241 (425)
T 1vp4_A 162 LEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD 241 (425)
T ss_dssp EETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC
T ss_pred cCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCc
Confidence 3 379999998865 2489985 7899999999987 56888999999999999999876432 1
Q ss_pred cc--c-ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHHHHHH
Q 009172 342 KA--L-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHLRVQQ 412 (541)
Q Consensus 342 ~~--l-~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~ 412 (541)
.. + ..+.++++.|+||+++ +| ...|++++++++++.++..........++...+++...++. +....++
T Consensus 242 ~~~~~~~~~~~i~~~s~sK~~~-~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 319 (425)
T 1vp4_A 242 PIFKIGGPERVVLLNTFSKVLA-PG-LRIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLAARYLERYDLLEQLKPTIEL 319 (425)
T ss_dssp CHHHHHCTTTEEEEEESTTTTC-GG-GCEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHH
T ss_pred CHHHhCCCCCEEEEeccccccc-cc-cceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 1 2256799999999998 44 45799999999988887655544334466666655555543 2333445
Q ss_pred HHHHHHHHHHHHHhC-C---CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCc
Q 009172 413 QNSTALRMAEILEAH-P---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGC 488 (541)
Q Consensus 413 ~~~na~~la~~L~~~-p---~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~ 488 (541)
..++++.+.+.|+++ | .+. +..| ..|.++++.++.+. ...++.+.|...++.+..|..
T Consensus 320 ~~~~~~~l~~~L~~~~~~~~g~~-~~~~----------------~~g~~~~~~~~~~~-~~~~l~~~l~~~gi~v~~g~~ 381 (425)
T 1vp4_A 320 YRRKRTVMLNALEEYFSDIPGVK-WVKS----------------EGGLFIWLTLPEGF-DTWEMFEYAKRKKVFYVPGRV 381 (425)
T ss_dssp HHHHHHHHHHHHHHHSTTSTTCE-ECCC----------------SBSSEEEEECCTTC-CTTTTHHHHHHHTEECEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCceE-EecC----------------CccEEEEEEcCCCC-CHHHHHHHHHHCCCEEECchh
Confidence 557778888888764 4 232 2222 14678999987321 122333444333566655533
Q ss_pred ccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009172 489 ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 539 (541)
Q Consensus 489 ~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E---d~edli~dL~~AL~ 539 (541)
+.. .+..++.||||++.. +.++.++.|.++++
T Consensus 382 f~~-------------------~~~~~~~iRis~~~~~~e~i~~~l~~l~~~l~ 416 (425)
T 1vp4_A 382 FKV-------------------YDEPSPSMRLSFCLPPDEKIVEGIKRLREVVL 416 (425)
T ss_dssp GCT-------------------TCCCCSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred hcC-------------------CCCCCCeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 211 011357999999974 34556666666654
No 104
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.93 E-value=1.2e-24 Score=225.92 Aligned_cols=277 Identities=13% Similarity=0.054 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccC--CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 212 TVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 212 ~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~--GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
..++++++++++ |. ++.+++++|++|+.+++.+++++ ||+|+++.++|.+... .+...|.++..++
T Consensus 61 ~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~~~~~ 136 (376)
T 3ezs_A 61 EESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEG----AAKFIKAKSLLMP 136 (376)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHH----HHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHH----HHHHcCCEEEEcc
Confidence 456777777665 63 46778888889999999999999 9999999999998654 3455688888876
Q ss_pred CCCHH----HHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc----ccc------
Q 009172 282 PADME----GLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KAL------ 344 (541)
Q Consensus 282 ~~dle----~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~----~~l------ 344 (541)
.++.+ ++++++++ ++++|++++|+||||.++| +++|.++|+++|+++|+|++|...... ...
T Consensus 137 ~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~ 215 (376)
T 3ezs_A 137 LTKENDFTPSLNEKELQ-EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLA 215 (376)
T ss_dssp CCGGGTSCCCCCHHHHH-HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHT
T ss_pred cCCCCCcchhHHhhhcc-CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccc
Confidence 54221 56666665 4899999999999999998 557777799999999999998763321 111
Q ss_pred ---ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH---HHHHHHHHHHHHH
Q 009172 345 ---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---LHLRVQQQNSTAL 418 (541)
Q Consensus 345 ---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t---l~~r~~~~~~na~ 418 (541)
..+.++++.|+||.+|.+| ...|++++++++++.++......+...++...+.+...++. +....++..++.+
T Consensus 216 ~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 294 (376)
T 3ezs_A 216 GNEAFKNVLVIHSLSKRSSAPG-LRSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASEAAWLDDRHAEFFRNIYANNLK 294 (376)
T ss_dssp TCTTCTTEEEEEESTTTTTCGG-GCCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccCcEEEEecchhccCCcc-ceeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3577899999999997555 34688999999999988776655566666666655555543 3334444455555
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCCCcccceecCcc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~G~~~sl~~~pa~ 497 (541)
.+.+.|+ .+ ..| ..|.+++++++ + ...+.+.|.. .++.+..|..+..
T Consensus 295 ~l~~~l~---~~---~~~----------------~~~~~~~~~~~-~---~~~~~~~l~~~~gi~v~~g~~~~~------ 342 (376)
T 3ezs_A 295 LARKIFK---NT---LIY----------------PYSFYVYLPVQ-N---GENFAKTLYQNEGIITLPALYLGR------ 342 (376)
T ss_dssp HHHHHST---TC---CCC----------------SBSSEEEEECS-C---HHHHHHHHHHHHCCBCEEGGGGCS------
T ss_pred HHHHHhc---CC---CCC----------------CcceEEEEECC-C---HHHHHHHHHHhCCEEEeCcHHhCC------
Confidence 5655554 11 111 25778899987 2 2233444433 4566665543321
Q ss_pred cccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009172 498 MSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH 539 (541)
Q Consensus 498 ~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~ 539 (541)
.+..++.||||++. |+.++.++.|.++++
T Consensus 343 -------------~~~~~~~iRis~~~~~~~i~~~l~~l~~~l~ 373 (376)
T 3ezs_A 343 -------------NRIGADYVRLALVYDTPLLEKPLEIIETYRE 373 (376)
T ss_dssp -------------TTTTTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred -------------CCCCCCeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 01246899999975 233445555555554
No 105
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.93 E-value=2.3e-23 Score=217.66 Aligned_cols=284 Identities=16% Similarity=0.084 Sum_probs=191.5
Q ss_pred HHH-HHHHHHHHh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 212 TVV-VEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 212 ~~~-Le~~LA~l~----g--~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
..+ |+++||+++ | . +..+++++|++|+.+++.+++++||+|+++.|+|++....+ ...|.++..++.
T Consensus 65 ~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~----~~~g~~~~~v~~ 140 (390)
T 1d2f_A 65 KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWSETGEGVVIHTPAYDAFYKAI----EGNQRTVMPVAL 140 (390)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSSCTTCEEEEEESCCHHHHHHH----HHTTCEEEEEEC
T ss_pred ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHH----HHCCCEEEEeec
Confidence 445 777777765 5 2 45777777789999999999999999999999999866443 445777776653
Q ss_pred --------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----cccccc
Q 009172 283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL 346 (541)
Q Consensus 283 --------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~ 346 (541)
.|+++|++++++.++++|++++|+||||.++| +++|.++|+++|+++|+|++|..... .....+
T Consensus 141 ~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 220 (390)
T 1d2f_A 141 EKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV 220 (390)
T ss_dssp EECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT
T ss_pred ccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHc
Confidence 48999999997645999999999999999988 78999999999999999999876432 111222
Q ss_pred C--C-cEEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhh-hcC-CCccHHHHHHHHHhHH----HHHHHHHHHHHH
Q 009172 347 G--A-DLVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHH-VLG-GALNPNAAYLIIRGMK----TLHLRVQQQNST 416 (541)
Q Consensus 347 g--a-Divv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~-~~g-~~~s~~~a~l~l~~l~----tl~~r~~~~~~n 416 (541)
. . |. +.|+||.++.+| ...|+++++ +++++.++.... ... ++.++...+.+...++ .+....++..++
T Consensus 221 ~~~~~d~-~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 298 (390)
T 1d2f_A 221 ARGDWAL-LTSGSKSFNIPA-LTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDN 298 (390)
T ss_dssp CCSSEEE-EECSHHHHTCGG-GCCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred chhhHhh-ccCccHhhcccC-hhheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 2 77 999999998554 346888874 788888876554 223 2455555554444443 234445556677
Q ss_pred HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceec
Q 009172 417 ALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQ 494 (541)
Q Consensus 417 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~ 494 (541)
++.+.+.|++ +|.+. +..| ..+.+++++++.......++.+.|. ..++.+..|..+..
T Consensus 299 ~~~l~~~L~~~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~--- 358 (390)
T 1d2f_A 299 LTYIADKMNAAFPELN-WQIP----------------QSTYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE--- 358 (390)
T ss_dssp HHHHHHHHHHHCSSCC-CCCC----------------SBCSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG---
T ss_pred HHHHHHHHHhhCCCCE-EecC----------------CccEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC---
Confidence 8888888887 56542 1111 1234567888631012345666665 45777766543210
Q ss_pred CcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 495 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 495 pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.||||++.. +.++.++.|.++++
T Consensus 359 ------------------~~~~~~Ris~~~~~~~l~~~l~~l~~~l~ 387 (390)
T 1d2f_A 359 ------------------EGRGFVRLNAGCPRSKLEKGVAGLINAIR 387 (390)
T ss_dssp ------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 1257899999974 22333444444443
No 106
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.93 E-value=7.1e-24 Score=221.30 Aligned_cols=302 Identities=18% Similarity=0.187 Sum_probs=211.1
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---- 282 (541)
..+...++|++|++++|.+++++++||++|+.+++.++ +++||+|+++.++|+++... +...|+++++++.
T Consensus 37 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~~~~~ 112 (393)
T 1mdo_A 37 TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNM----IVLLGANPVMVDVDRDT 112 (393)
T ss_dssp SSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCHHHHHH----HHHTTCEEEEECBCTTT
T ss_pred CChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcCCCCCCEEEeCCCccHhHHHH----HHHCCCEEEEEeccCCc
Confidence 46889999999999999988999999999999999999 99999999999999987643 3456888888863
Q ss_pred --CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC-CcEEEECCc--c
Q 009172 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG-ADLVLHSAT--K 357 (541)
Q Consensus 283 --~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g-aDivv~S~s--K 357 (541)
.|+++|++++++ ++++|+++ ||+|.+.|+++|.++|+++|+++|+|++|+.+........+ .|+++.|+| |
T Consensus 113 ~~~d~~~l~~~l~~-~~~~v~~~---~~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~S~~k~K 188 (393)
T 1mdo_A 113 LMVTPEHIEAAITP-QTKAIIPV---HYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIK 188 (393)
T ss_dssp CCBCHHHHHHHCCT-TEEEECCB---CGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEETTSSSEEEEECCTTS
T ss_pred CCCCHHHHHHhcCC-CceEEEEe---CCCCCcCCHHHHHHHHHHcCCeEEEECccccCCeECCeecCCCCeEEEeCCCCC
Confidence 379999999987 59999874 58999999999999999999999999999865332222345 899999999 9
Q ss_pred ccCCCCCceEEEEEeC-hHHHHHHHHHhhhc----------------------C--CCccHHHHHHHHHhHHHHHHHHHH
Q 009172 358 FIGGHNDVLAGSISGS-GKLVTQIRNLHHVL----------------------G--GALNPNAAYLIIRGMKTLHLRVQQ 412 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~----------------------g--~~~s~~~a~l~l~~l~tl~~r~~~ 412 (541)
+++|. .+|+++.+ ++++++++...... | ..+++..+.++...++.+....++
T Consensus 189 ~l~~~---~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~~~~~~ 265 (393)
T 1mdo_A 189 NITCA---EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNAR 265 (393)
T ss_dssp SSCSS---SCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccc---cceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99764 37888886 78888877543210 1 124666666666677777777777
Q ss_pred HHHHHHHHHHHHHhCCCceEEeC-CCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCCceeecCCCc
Q 009172 413 QNSTALRMAEILEAHPKVKRVHY-PGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIPYIAPSFGGC 488 (541)
Q Consensus 413 ~~~na~~la~~L~~~p~v~~V~~-Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g---~~~~~~~~l~~L~~~~iavS~G~~ 488 (541)
..++++++.+.|.+.+ +. +.. |.. .. .+.+.+++|.++. + ....++.+.|...++.++.|..
T Consensus 266 ~~~~~~~l~~~L~~~~-~~-~~~~~~~-~~----------~~~~~~~~v~~~~~~~~-~~~~~l~~~l~~~gi~v~~~~~ 331 (393)
T 1mdo_A 266 RAAIAAQYHQAMADLP-FQ-PLSLPSW-EH----------IHAWHLFIIRVDEARCG-ITRDALMASLKTKGIGTGLHFR 331 (393)
T ss_dssp HHHHHHHHHHHHHTSS-CE-ECCCCSS-CE----------ECCCSCEEEECCHHHHS-SCHHHHHHHHHHTTBCCBCCCC
T ss_pred HHHHHHHHHHHHhcCC-cc-cccCCCC-CC----------CceeEEEEEEecccccc-cCHHHHHHHHHhCCCCcccccC
Confidence 7888899999998876 43 221 210 00 1234578898862 1 1234556666556777776643
Q ss_pred ccceecCcccc---cccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 489 ESIVDQPAIMS---YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 489 ~sl~~~pa~~~---~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.. ...|.... ...++...+ +..+.|||+++...+++.++.+.++|+
T Consensus 332 ~~-~~~~~~~~~~~~~~~~~~~~----~~~~~lRi~~~~~~t~~~i~~~~~~l~ 380 (393)
T 1mdo_A 332 AA-HTQKYYRERFPTLTLPDTEW----NSERICSLPLFPDMTESDFDRVITALH 380 (393)
T ss_dssp CG-GGSHHHHHHSTTCCCHHHHH----HHTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred cc-ccChhhhccCCccCChhHHH----HHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence 21 00000000 000110000 124689999997666666666666654
No 107
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.93 E-value=4.1e-24 Score=226.60 Aligned_cols=289 Identities=13% Similarity=0.062 Sum_probs=194.6
Q ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHH--HHHHHHhcc--C----------CCEEEEcCCCCcchHHHHHhhcccC
Q 009172 210 PTTVVVEEKMSALEGAE--STVIMASGMSAS--TVMLLALVP--A----------GGHIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai--~~al~all~--~----------GD~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
....+|+++||++++.+ +.++++++++++ .+++.+++. + ||+|+++.|+|.++... ++..
T Consensus 78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~----~~~~ 153 (427)
T 3ppl_A 78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSI----TERF 153 (427)
T ss_dssp SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHH----HHHT
T ss_pred CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHH----HHHc
Confidence 35679999999999873 455555566898 478888877 6 99999999999986643 4456
Q ss_pred CcEEEEeCC----CCHHHHHHhccCCCeeEEEEe-CCCCCCCcccCHH---HHHHHH-HhCCCEEEEEcCCCCCCcc---
Q 009172 274 GITATVIDP----ADMEGLEAALNNNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLNQ--- 341 (541)
Q Consensus 274 Gi~v~~vd~----~dle~Le~ai~~~~tklV~le-sp~NPtG~v~di~---~Ia~la-~~~gillvvDea~a~~~~~--- 341 (541)
|.+++.++. .|+++|+++++..++++|+++ +|+||||.++|.+ +|+++| +++|+++|+|++|......
T Consensus 154 g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~ 233 (427)
T 3ppl_A 154 GFEMISVPMNEDGPDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEF 233 (427)
T ss_dssp TCEEEEEEEETTEECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCC
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCC
Confidence 777777653 389999999953369999976 7899999999977 888888 9999999999998753211
Q ss_pred ----ccc-------ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH-----
Q 009172 342 ----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT----- 405 (541)
Q Consensus 342 ----~~l-------~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t----- 405 (541)
... ..+.++++.|+||.++ +| ...|++++++++++.+.......+...+......+...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~-~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 311 (427)
T 3ppl_A 234 PEVIDIVGLGEAAGNPNRFWAFTSTSKITL-AG-AGVSFFLTSAENRKWYTGHAGIRGIGPNKVNQLAHARYFGDAEGVR 311 (427)
T ss_dssp CCCCCHHHHHHHTTCTTSEEEEEESTTTSC-TT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCSHHHHH
T ss_pred CCccchhhhhhccCCCCcEEEEechhhccC-cC-ccEEEEEcCHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhChhhHH
Confidence 111 3367899999999944 34 35789999999999988776655655566555544443332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhC-CCc--eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009172 406 --LHLRVQQQNSTALRMAEILEAH-PKV--KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 480 (541)
Q Consensus 406 --l~~r~~~~~~na~~la~~L~~~-p~v--~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ 480 (541)
+....+...++.+.+.+.|.++ +.+ ..+..| ..|.++++++++. ....+.+.|...+
T Consensus 312 ~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p----------------~~g~~~~~~~~~~--~~~~~~~~l~~~g 373 (427)
T 3ppl_A 312 AVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP----------------AGGYFISLDVVPG--TASRVAELAKEAG 373 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC----------------SBSSCEEEECSTT--CHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC----------------CccEEEEEECCcc--hHHHHHHHHHHCC
Confidence 2222233344555666666542 221 122222 1477899999753 2445566666668
Q ss_pred eeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009172 481 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH 539 (541)
Q Consensus 481 iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed---~edli~dL~~AL~ 539 (541)
+.+..|+.+.. .. .+..++.||||++..+ .++.++.|.++++
T Consensus 374 v~v~~~g~~~~---~~--------------~~~~~~~~Ris~~~~~~~~i~~~~~~l~~~l~ 418 (427)
T 3ppl_A 374 IALTGAGSSYP---LR--------------QDPENKNLRLAPSLPPVEELEVAMDGVATCVL 418 (427)
T ss_dssp EECCCTTTTSG---GG--------------CCTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred CEEecCcCcCC---CC--------------CCCCCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 88887543211 00 0123689999998743 4445555555554
No 108
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.92 E-value=6.7e-24 Score=224.87 Aligned_cols=290 Identities=13% Similarity=0.153 Sum_probs=196.2
Q ss_pred CCCCchh-HHHHHHHHHHHhC--------C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccC
Q 009172 205 GRYGNPT-TVVVEEKMSALEG--------A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 205 ~R~~~p~-~~~Le~~LA~l~g--------~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
.+|+++. ..+|++++|++++ . +..+++++|++++.+++.+++++||+|+++.++|++... ......
T Consensus 77 ~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~---~~~~~~ 153 (428)
T 1iay_A 77 ANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNR---DLRWRT 153 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHH---HTTTTT
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHhCCCCCeEEEccCCCcchHH---HHHHhc
Confidence 4566665 7899999999876 2 345555555699999999999999999999999998542 233456
Q ss_pred CcEEEEeCCC-------CHHHHHHhccC-----CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCC
Q 009172 274 GITATVIDPA-------DMEGLEAALNN-----NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP 338 (541)
Q Consensus 274 Gi~v~~vd~~-------dle~Le~ai~~-----~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~ 338 (541)
|+++..++.+ |+++|++++++ .++++|++++|+||||.+.| +++|.++|+++|++||+||+|...
T Consensus 154 g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 233 (428)
T 1iay_A 154 GVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAAT 233 (428)
T ss_dssp CCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGG
T ss_pred CCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEecccccc
Confidence 8888887642 78999988863 25899999999999999999 889999999999999999998753
Q ss_pred Ccc-----c--ccccC-------Cc--EEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 009172 339 LNQ-----K--ALSLG-------AD--LVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR 401 (541)
Q Consensus 339 ~~~-----~--~l~~g-------aD--ivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~l~ 401 (541)
... . .+..+ .| +++.|+||.+|.+| ...|++++ ++++++.++.....++ .++....++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~G-lr~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~ 310 (428)
T 1iay_A 234 VFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFGL--VSTQTQYFLAA 310 (428)
T ss_dssp CCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGG-GCEEEEEESCHHHHHHHHHHHTTSC--CCHHHHHHHHH
T ss_pred ccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCC-ceEEEEEeCCHHHHHHHHHHHhccc--CCHHHHHHHHH
Confidence 211 1 11112 57 89999999998555 34688887 6788888876544332 34444444433
Q ss_pred hHHH-------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HHHH
Q 009172 402 GMKT-------LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LTAT 469 (541)
Q Consensus 402 ~l~t-------l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-----~~~~ 469 (541)
.++. +....++..++++.+.+.|+++ ++. + ++. ..|.++++++++. ....
T Consensus 311 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------------~~g~~~~~~~~~~~~~~~~~~~ 372 (428)
T 1iay_A 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIK-C-LKN---------------NAGLFCWMDLRPLLRESTFDSE 372 (428)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-B-CCC---------------SSSSEEEEECGGGCSSSSHHHH
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCC---------------CeeEEEEEechhhcCCCchhHH
Confidence 3332 2334455567778888888876 332 1 111 1467889998641 1234
Q ss_pred HHHHHHcCC-CceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009172 470 IKFIDALKI-PYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH 539 (541)
Q Consensus 470 ~~~l~~L~~-~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---Ed~edli~dL~~AL~ 539 (541)
..+.+.|.. .++.+..|+.+.. ..+++|||+++. |+.+.+++.|.++++
T Consensus 373 ~~l~~~l~~~~gi~v~~~~~~~~---------------------~~~~~iRis~~~~~~e~i~~~~~~l~~~l~ 425 (428)
T 1iay_A 373 MSLWRVIINDVKLNVSPGSSFEC---------------------QEPGWFRVCFANMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp HHHHHHHHHTSCEECEEGGGGTC---------------------SSSSEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEeCchhhCC---------------------CCCCEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 566666643 3776665543210 125789999993 234455555555554
No 109
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.92 E-value=2.9e-23 Score=219.89 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 212 ~~~Le~~LA~l~----g~----~-~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
..+|+++|++++ |. + .++++++|++|+.+++.+++++||+|+++.+.|++....+ ...|.++..++.
T Consensus 79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~----~~~g~~~~~~~~ 154 (429)
T 1yiz_A 79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMV----KAAGGIPRFIPL 154 (429)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHH----HHcCCEEEEEeC
Confidence 567777777775 52 3 5666666779999999999999999999999999966433 345777766642
Q ss_pred ---------------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----
Q 009172 283 ---------------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (541)
Q Consensus 283 ---------------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~---- 340 (541)
.|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|.....
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~ 233 (429)
T 1yiz_A 155 KPNKTGGTISSADWVLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFE 233 (429)
T ss_dssp BCCCSSSSEEGGGCBCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSC
T ss_pred CcccccccccccCcccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCC
Confidence 478999999986 5999999999999999996 88999999999999999999875321
Q ss_pred ---cccc--ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----------
Q 009172 341 ---QKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---------- 405 (541)
Q Consensus 341 ---~~~l--~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t---------- 405 (541)
...+ ..+.|+++.|+||.++++| ...|++++++++++.+...........++.....+...++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~ 312 (429)
T 1yiz_A 234 HIRICTLPGMWERTITIGSAGKTFSLTG-WKIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPEC 312 (429)
T ss_dssp CCCGGGSTTTGGGEEEEEEHHHHHTCGG-GCCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTS
T ss_pred CcChhhccCCcCceEEEecchhccCCCC-cceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhcccccccchHH
Confidence 1112 3467999999999998665 34689999999998887765444444555555444445544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-----------HHHHHHH
Q 009172 406 -LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-----------TATIKFI 473 (541)
Q Consensus 406 -l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-----------~~~~~~l 473 (541)
+....++..++++.+.+.|+++ ++. +..|. .|.++++++++.. ....++.
T Consensus 313 ~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (429)
T 1yiz_A 313 YFNSISGELMAKRDYMASFLAEV-GMN-PTVPQ----------------GGYFMVADWSSLDSKVDLTQETDARKDYRFT 374 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCE-EEECS----------------BSSEEEEECCSSCTTTTCCSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCc-ccCCC----------------cceEEEEEcccccccccccccccCCCHHHHH
Confidence 3333445556777788888775 333 22221 3568999987420 1344566
Q ss_pred HHcC-CCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHH
Q 009172 474 DALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQAL 538 (541)
Q Consensus 474 ~~L~-~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL 538 (541)
+.|. ..++.+..|..+.. +. + .+..++.||||++.. +.++.++.|.+++
T Consensus 375 ~~l~~~~gv~v~~g~~f~~---~~---~----------~~~~~~~iRis~~~~~e~i~~~l~~l~~~l 426 (429)
T 1yiz_A 375 KWMTKSVGLQGIPPSAFYS---EP---N----------KHLGEDFVRYCFFKKDENLQKAAEILRKWK 426 (429)
T ss_dssp HHHHHHTSEECBCGGGGSC---GG---G----------GGGTTTEEEEECCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCEEEeCchHhCC---Cc---c----------cCCCCCeEEEEecCCHHHHHHHHHHHHHhc
Confidence 6553 45777766543221 00 0 011357999999951 2333444444443
No 110
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.92 E-value=2e-24 Score=222.11 Aligned_cols=285 Identities=16% Similarity=0.127 Sum_probs=194.0
Q ss_pred hhHHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhccCCCEEEEcC-CCCcchHHHHHhhcccCCcEEEEeCC--
Q 009172 210 PTTVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVPAGGHIVTTT-DCYRKTRIFIETVLPKMGITATVIDP-- 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~----~~i~~sSG~~Ai~~al~all~~GD~VIv~~-~~y~~~~~~~~~~l~~~Gi~v~~vd~-- 282 (541)
+...+++++|++++|.. .++++++|++|+.+++.+++++||+|++.+ +.|+..+ ...+...|+++..++.
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vi~~~~~~~~~~~---~~~~~~~g~~~~~v~~~~ 113 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARM---VEMAGLMGIAHHAYDCGE 113 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSCCTTCCEEEEESSHHHHHH---HHHHHHHTCCEEEEECCT
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHhcCCCCeEEEEeCCCccHHH---HHHHHHhCCceEEEeCCC
Confidence 67899999999999942 477888888999999999999999988776 4454432 2233445777776653
Q ss_pred ---CCHHHHHHhccCC-CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCcc
Q 009172 283 ---ADMEGLEAALNNN-NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATK 357 (541)
Q Consensus 283 ---~dle~Le~ai~~~-~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK 357 (541)
.|+++|+++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......+.|+++.|+||
T Consensus 114 ~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K 193 (366)
T 1m32_A 114 VARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANK 193 (366)
T ss_dssp TSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSS
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcc
Confidence 4799999999753 489999999999999999999999999999999999999875432 22233578999999999
Q ss_pred ccCCCCCceEEEEEeChHHHHHHHHHh---------------h---hcCCCccHHHHHHHHHhHHHH------HHHHHHH
Q 009172 358 FIGGHNDVLAGSISGSGKLVTQIRNLH---------------H---VLGGALNPNAAYLIIRGMKTL------HLRVQQQ 413 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~~~li~~l~~~~---------------~---~~g~~~s~~~a~l~l~~l~tl------~~r~~~~ 413 (541)
+++++.+ .|+++++++++++++... . ....+.++...+.+...++.+ ....++.
T Consensus 194 ~~~~~~g--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 271 (366)
T 1m32_A 194 CIQGVPG--FAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRY 271 (366)
T ss_dssp TTCCCSS--EEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccCCCc--eEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHH
Confidence 8755432 499999888776543210 0 001244444444444444432 3455666
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcCCCceeecCCCcccc
Q 009172 414 NSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALKIPYIAPSFGGCESI 491 (541)
Q Consensus 414 ~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g--~~~~~~~~l~~L~~~~iavS~G~~~sl 491 (541)
.++++++.+.|+++ ++. +..|. . ...|.+++|.++. + ....++.+.|...++.+..|..+
T Consensus 272 ~~~~~~l~~~L~~~-~~~-~~~~~-----~--------~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~-- 333 (366)
T 1m32_A 272 QQNQRSLVAGMRAL-GFN-TLLDD-----E--------LHSPIITAFYSPEDPQ-YRFSEFYRRLKEQGFVIYPGKVS-- 333 (366)
T ss_dssp HHHHHHHHHHHHHT-TCC-BSSCG-----G--------GBCSSEEEEECCCCTT-CCHHHHHHHHHHTTEECEECCCS--
T ss_pred HHHHHHHHHHHHHC-CCe-eccCc-----h--------hcCceEEEEEcCccCC-CCHHHHHHHHHHCCEEEECCcCC--
Confidence 77888888888876 332 11110 0 1135589999873 2 12345555555446666554321
Q ss_pred eecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 492 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 492 ~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
..+.|||+++..++++.++.+.++|+
T Consensus 334 ----------------------~~~~iRi~~~~~~~~~~i~~~~~~l~ 359 (366)
T 1m32_A 334 ----------------------QSDCFRIGNIGEVYAADITALLTAIR 359 (366)
T ss_dssp ----------------------SSCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEecCCCCCHHHHHHHHHHHH
Confidence 24789999997655555555555554
No 111
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.92 E-value=1e-23 Score=222.25 Aligned_cols=285 Identities=14% Similarity=0.135 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHHhCC--------CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALEGA--------ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~--------~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...+++++++++++. ++++++++|++|+.+++.+++++||+|+++.++|+++... +...|.++..++.
T Consensus 80 g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~ 155 (409)
T 2gb3_A 80 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAF----AKIAGVKLIPVTR 155 (409)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHH----HHHHTCEEEEEEC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHH----HHHcCCEEEEecc
Confidence 467888888888741 4677778888999999999999999999999999986643 3445778777764
Q ss_pred CC------HHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----ccccc--cC
Q 009172 283 AD------MEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--LG 347 (541)
Q Consensus 283 ~d------le~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~l~--~g 347 (541)
++ +++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..+.. ...+. .+
T Consensus 156 ~~~~~~~~~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~ 234 (409)
T 2gb3_A 156 RMEEGFAIPQNLESFINE-RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESD 234 (409)
T ss_dssp CGGGTSCCCTTGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCT
T ss_pred CCCCCCccHHHHHHhhCc-CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCC
Confidence 32 6888888877 5999999999999999975 78999999999999999999876432 11121 36
Q ss_pred CcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Q 009172 348 ADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTALRMAE 422 (541)
Q Consensus 348 aDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~~~na~~la~ 422 (541)
.|+++.|+||+++.+| ...|++++++ ++++.++....... ..++...+.+...++ .+....++..++++.+.+
T Consensus 235 ~~i~~~s~sK~~g~~G-~r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 312 (409)
T 2gb3_A 235 KVVVIDSVSKKFSACG-ARVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLK 312 (409)
T ss_dssp TEEEEEESTTTTTCGG-GCCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecchhccCCcc-ceEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999998555 3468999988 89888877655543 555555554444442 244445556677888888
Q ss_pred HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC------ceeecCCCcccceecCc
Q 009172 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP------YIAPSFGGCESIVDQPA 496 (541)
Q Consensus 423 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~------~iavS~G~~~sl~~~pa 496 (541)
.|+++ ++..+..| ..|.++++.+++ ....++.+.|... ++.+..|..+.. .
T Consensus 313 ~L~~~-g~~~~~~~----------------~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~--~-- 369 (409)
T 2gb3_A 313 KLEEH-GLKRFTKP----------------SGAFYITAELPV--EDAEEFARWMLTDFNMDGETTMVAPLRGFYL--T-- 369 (409)
T ss_dssp HHHHT-TCCCBCCC----------------SBSSEEEEECSS--SCHHHHHHHHHHSCCBTTEEEECEEGGGGCS--S--
T ss_pred HHHHc-CceeeeCC----------------CeeEEEEEEeCC--CCHHHHHHHHHhccccccCcEEEeCchHhCC--C--
Confidence 88876 33210111 135577778862 1234455555332 666655432210 0
Q ss_pred ccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 497 IMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 497 ~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
.+..++.|||+++.. +.+..++.|.++++
T Consensus 370 --------------~~~~~~~iRis~~~~~e~i~~~~~~l~~~l~ 400 (409)
T 2gb3_A 370 --------------PGLGKKEIRIACVLEKDLLSRAIDVLMEGLK 400 (409)
T ss_dssp --------------TTTTSSEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCCEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 012367999999932 33445555555554
No 112
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.92 E-value=7.9e-24 Score=220.97 Aligned_cols=294 Identities=15% Similarity=0.137 Sum_probs=197.3
Q ss_pred CCCCCchhHHHHHHHHHHHhCCC-c--EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAE-S--TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~-~--~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
|+.+..+...+++++|++++|.+ + .+++++|++|+.+++.+++++||+|+++.++|.++. +...++..|++++.+
T Consensus 45 ~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~vl~~~~~~~~~~--~~~~~~~~g~~~~~v 122 (396)
T 2ch1_A 45 FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIWAER--AVEMSERYGADVRTI 122 (396)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHHHHH--HHHHHHHTTCEEEEE
T ss_pred CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHhcCCCCeEEEEcCCcccHH--HHHHHHHcCCceEEe
Confidence 44444456889999999999974 3 455666789999999999999999999999999853 223455678888887
Q ss_pred CC-----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEEC
Q 009172 281 DP-----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHS 354 (541)
Q Consensus 281 d~-----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S 354 (541)
+. .|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. .....+++|+++.|
T Consensus 123 ~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s 202 (396)
T 2ch1_A 123 EGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTG 202 (396)
T ss_dssp ECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECC
T ss_pred cCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEc
Confidence 63 4899999999762489999999999999999999999999999999999999874321 22234578999999
Q ss_pred CccccCCCCCceEEEEEeChHHHHHHHHHh-----------------------hhcCCCccHHHHHHHHHhHHH-----H
Q 009172 355 ATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKT-----L 406 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-----------------------~~~g~~~s~~~a~l~l~~l~t-----l 406 (541)
++|+++++.+ .|+++.++++++.++... ....++.+......+...++. +
T Consensus 203 ~~K~~~~~~g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 280 (396)
T 2ch1_A 203 AQKVLGAPPG--ITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGL 280 (396)
T ss_dssp CC-CCCCCSS--CEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_pred CCccccCCCC--eEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhH
Confidence 9998776543 388888988887764310 001122333333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecC
Q 009172 407 HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSF 485 (541)
Q Consensus 407 ~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~ 485 (541)
....++..++++++.+.|+++ ++. +..|. ..+ ..+++++|.++.+ ....++.+.|.. .++.+..
T Consensus 281 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~~----~~~--------~~~~~~~~~~~~~-~~~~~~~~~L~~~~gi~v~~ 345 (396)
T 2ch1_A 281 ENQIKRRIECAQILYEGLGKM-GLD-IFVKD----PRH--------RLPTVTGIMIPKG-VDWWKVSQYAMNNFSLEVQG 345 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCC-BSSCS----GGG--------BCTTEEEEECCTT-CCHHHHHHHHHHHHCBCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCe-eccCC----ccc--------cCCceEEEEcCCC-CCHHHHHHHHHHhCCEEEec
Confidence 345566677888888888875 332 11111 000 1356889988632 123344444432 2555554
Q ss_pred CCcccceecCcccccccCCHHHHHhcCCCCCeEEEEe-cC----CCHHHHHHHHHHHHh
Q 009172 486 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GV----EDFEDLKADVLQALH 539 (541)
Q Consensus 486 G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~----Ed~edli~dL~~AL~ 539 (541)
|.. + ..++.|||++ +. |+.+.+++.|.++++
T Consensus 346 g~~------~-----------------~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~ 381 (396)
T 2ch1_A 346 GLG------P-----------------TFGKAWRVGIMGECSTVQKIQFYLYGFKESLK 381 (396)
T ss_dssp CCG------G-----------------GTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred Ccc------c-----------------cCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH
Confidence 421 0 1357899999 63 345666666666664
No 113
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.92 E-value=1.4e-23 Score=221.12 Aligned_cols=283 Identities=11% Similarity=0.087 Sum_probs=189.7
Q ss_pred hhHHHHHHHHHHHhC--------------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 210 PTTVVVEEKMSALEG--------------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 210 p~~~~Le~~LA~l~g--------------~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
....+|++++|++++ .++++++++|++|+.+++.+++++||+|+++.++|+++.. .+...|+
T Consensus 75 ~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~----~~~~~g~ 150 (416)
T 1bw0_A 75 VGSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYET----VCKAYGI 150 (416)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHH----HHHHTTC
T ss_pred CCCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHH----HHHHcCc
Confidence 356789999999887 2456777777899999999999999999999999998654 3445677
Q ss_pred EEEEeCC-------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-c---
Q 009172 276 TATVIDP-------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-Q--- 341 (541)
Q Consensus 276 ~v~~vd~-------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-~--- 341 (541)
++..++. .|+++|++++++ ++++|++++|+||||.++| +++|.++|+++|++||+|++|..... .
T Consensus 151 ~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~ 229 (416)
T 1bw0_A 151 GMHFYNCRPENDWEADLDEIRRLKDD-KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDP 229 (416)
T ss_dssp EEEEEEEEGGGTTEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCT
T ss_pred EEEEeecCcccCCCCCHHHHHHHhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC
Confidence 7776642 379999999987 4899999999999999999 88999999999999999999876321 1
Q ss_pred -----cccc---cCCcEEEECCccccCCCCCceEEEEEeCh--HHHHHHH----HHhhhcCCCccHHHHHHHHHhHH---
Q 009172 342 -----KALS---LGADLVLHSATKFIGGHNDVLAGSISGSG--KLVTQIR----NLHHVLGGALNPNAAYLIIRGMK--- 404 (541)
Q Consensus 342 -----~~l~---~gaDivv~S~sK~lgg~g~v~gG~vv~~~--~li~~l~----~~~~~~g~~~s~~~a~l~l~~l~--- 404 (541)
.... .+.++++.|+||.++.+| ...|++++++ ++++.+. .... .....++...+.+...++
T Consensus 230 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-lr~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~~ 307 (416)
T 1bw0_A 230 NATFTSVADFETTVPRVILGGTAKNLVVPG-WRLGWLLYVDPHGNGPSFLEGLKRVGM-LVCGPCTVVQAALGEALLNTP 307 (416)
T ss_dssp TCCCCCTTSSCCSCCEEEEEESTTTTSCGG-GCCEEEEEECTTCSCHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHSSC
T ss_pred CCCccCHHHccCCCcEEEEecchhhCCCCC-ceEEEEEeeCchhhHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHhccc
Confidence 1111 123588999999987665 3467777654 3444333 2221 122345555554444443
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC----HHHHHHHHHHc-C
Q 009172 405 --TLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD----LTATIKFIDAL-K 477 (541)
Q Consensus 405 --tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~----~~~~~~~l~~L-~ 477 (541)
.+....++..++++.+.+.|+++|++. +..|. .|.++++.++.. ......+.+.| +
T Consensus 308 ~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (416)
T 1bw0_A 308 QEHLDQIVAKIEESAMYLYNHIGECIGLA-PTMPR----------------GAMYLMSRIDLEKYRDIKTDVEFFEKLLE 370 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTEE-ECCCC----------------BTTEEEEEECGGGBSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccCCC----------------eeEEEEEeCCHHHcCCCCCHHHHHHHHHH
Confidence 344556667788888888898776653 22221 466788888521 01233454544 3
Q ss_pred CCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 478 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 478 ~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.+..|..+. .++.+|||++.. +.++.++.|.++++
T Consensus 371 ~~gi~v~~g~~f~-----------------------~~~~iRis~~~~~e~l~~~l~~l~~~l~ 411 (416)
T 1bw0_A 371 EENVQVLPGTIFH-----------------------APGFTRLTTTRPVEVYREAVERIKAFCQ 411 (416)
T ss_dssp HHCEECEEGGGGT-----------------------CTTEEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred HCCEEEecccccC-----------------------CCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 4466665543211 146899999853 23444445555543
No 114
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.92 E-value=1.6e-23 Score=220.33 Aligned_cols=284 Identities=13% Similarity=0.084 Sum_probs=192.9
Q ss_pred hHHHHHHHHHHHh----C--C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 211 TTVVVEEKMSALE----G--A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g--~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
...++++++++++ | . ++++++++|++|+.+++.+++++||+|+++.++|+++... +...|.++..++.
T Consensus 79 g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~----~~~~g~~~~~v~~ 154 (406)
T 1xi9_A 79 GLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGL----VKFYGGKPVEYRT 154 (406)
T ss_dssp CCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHH----HHHTTCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHH----HHHcCCEEEEeec
Confidence 3567888888776 2 2 4577777778999999999999999999999999886543 3446777776653
Q ss_pred -------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----ccccc--c
Q 009172 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN----QKALS--L 346 (541)
Q Consensus 283 -------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~----~~~l~--~ 346 (541)
.|+++|++++++ ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..+.. ..... .
T Consensus 155 ~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~ 233 (406)
T 1xi9_A 155 IEEEDWQPDIDDIRKKITD-RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTK 233 (406)
T ss_dssp EGGGTSEECHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCS
T ss_pred CCCcCCcCCHHHHHHhhCc-CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCC
Confidence 279999999987 5999999999999999987 88999999999999999999876432 11112 3
Q ss_pred CC-cEEEECCccccCCCCCceEEEEE--eCh----HHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHH
Q 009172 347 GA-DLVLHSATKFIGGHNDVLAGSIS--GSG----KLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNS 415 (541)
Q Consensus 347 ga-Divv~S~sK~lgg~g~v~gG~vv--~~~----~li~~l~~~~~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~~~ 415 (541)
+. |+++.|+||+++.+|. ..|+++ +++ ++++.++...... ...++...+.+...++ .+....++..+
T Consensus 234 ~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 311 (406)
T 1xi9_A 234 DVPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKE 311 (406)
T ss_dssp SSCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred CceEEEEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 56 8999999999985552 357777 888 8988887655443 3344444444444443 24444556667
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcC-CCceeecCCCcccce
Q 009172 416 TALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALK-IPYIAPSFGGCESIV 492 (541)
Q Consensus 416 na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g--~~~~~~~~l~~L~-~~~iavS~G~~~sl~ 492 (541)
+++.+.+.|+++|.+. +..|. .|.++++.++. + ....++.+.|. ..++.+..|..+..
T Consensus 312 ~~~~l~~~L~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~- 372 (406)
T 1xi9_A 312 RRDYIYKRLNEIPGIS-TTKPQ----------------GAFYIFPKIEVGPW-KNDKEFVLDVLHNAHVLFVHGSGFGE- 372 (406)
T ss_dssp HHHHHHHHHHTSTTEE-CCCCC----------------BSSEECCEECSCSC-SSHHHHHHHHHHHHCEECEEGGGGCG-
T ss_pred HHHHHHHHHHhCCCCe-eecCC----------------eeEEEEEecCccCC-CCHHHHHHHHHHhCCEEEeCchhcCC-
Confidence 7888888888776543 11111 24456667763 1 12344555443 44666655533210
Q ss_pred ecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHhh
Q 009172 493 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALHA 540 (541)
Q Consensus 493 ~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~~ 540 (541)
..++.||||++.. +.++.++.|.+++++
T Consensus 373 --------------------~~~~~lRis~~~~~~~i~~~~~~l~~~l~~ 402 (406)
T 1xi9_A 373 --------------------YGAGHFRAVFLPPIEILEEAMDRFEKFMKE 402 (406)
T ss_dssp --------------------GGTTBEEEECCSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCEEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 0257899999932 234455555555543
No 115
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.7e-23 Score=219.00 Aligned_cols=253 Identities=14% Similarity=0.145 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHh----CC----C-cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 212 TVVVEEKMSALE----GA----E-STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 212 ~~~Le~~LA~l~----g~----~-~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
..+|++++++++ |. + +++++++|++|+.+++.+++++||+|+++.++|++.... +...|.++..++.
T Consensus 64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~----~~~~g~~~~~v~~ 139 (411)
T 2o0r_A 64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPV----VAMAGAHRVTVPL 139 (411)
T ss_dssp CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHH----HHHTTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEeec
Confidence 567777777775 52 3 566777778999999999999999999999999996543 3456777777653
Q ss_pred --------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEEcCCCCCCcc-----cc--c
Q 009172 283 --------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ-----KA--L 344 (541)
Q Consensus 283 --------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di---~~Ia~la~~~gillvvDea~a~~~~~-----~~--l 344 (541)
.|+++|++++++ ++++|++++|+||||.++|. ++|.++|+++|+++|+|++|..+... .. +
T Consensus 140 ~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~ 218 (411)
T 2o0r_A 140 VPDGRGFALDADALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGF 218 (411)
T ss_dssp EEETTEEECCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGS
T ss_pred cccccCCCCCHHHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhc
Confidence 489999999987 59999999999999999874 89999999999999999998754221 11 1
Q ss_pred --ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH----HHHHHHHHHHHHHH
Q 009172 345 --SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK----TLHLRVQQQNSTAL 418 (541)
Q Consensus 345 --~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~----tl~~r~~~~~~na~ 418 (541)
..+.|+++.|+||.++.+| ...|++++++++++.+.......+...++.....+...++ .+....++..++++
T Consensus 219 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~ 297 (411)
T 2o0r_A 219 DGMAERTITISSAAKMFNCTG-WKIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRD 297 (411)
T ss_dssp TTTGGGEEEEEEHHHHTTCTT-TCEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeechhhcCCcc-ceEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 1467999999999998665 4579999999998888765543333333333333333333 23444455667777
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC-CCceeecCCCc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK-IPYIAPSFGGC 488 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-~~~~~~~l~~L~-~~~iavS~G~~ 488 (541)
.+.+.|+++ ++. +..| ..|.+++++++.. ......+.+.|. ..++.+..|..
T Consensus 298 ~l~~~L~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~ 351 (411)
T 2o0r_A 298 RLAAGLTEI-GFA-VHDS----------------YGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSA 351 (411)
T ss_dssp HHHHHHHHH-TCE-ECCC----------------CBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGG
T ss_pred HHHHHHHHc-CCE-ecCC----------------CeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhh
Confidence 888888765 332 2211 1355889998631 011234444442 34666665543
No 116
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.92 E-value=1.8e-23 Score=217.02 Aligned_cols=286 Identities=14% Similarity=0.147 Sum_probs=194.1
Q ss_pred hHHHHHHHHHHHhCC------CcEEEeCCHHHHHHHHHHHhc---cCCCEEEEcCC-CCcchHHHHHhhcccCCcEEEEe
Q 009172 211 TTVVVEEKMSALEGA------ESTVIMASGMSASTVMLLALV---PAGGHIVTTTD-CYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~------~~~i~~sSG~~Ai~~al~all---~~GD~VIv~~~-~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
...+++++++++++. ++.+++++|++|+.+++.++. ++||+|++..+ .|+... ...+...|.+++.+
T Consensus 39 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~~~~gd~vlv~~~~~~~~~~---~~~~~~~g~~~~~v 115 (385)
T 2bkw_A 39 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRF---ADCLRSYGAQVDVV 115 (385)
T ss_dssp HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHH---HHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhccCCCCCeEEEEcCCcchHHH---HHHHHHcCCceEEE
Confidence 456788899998875 245667777899999999987 89999988744 554432 13345678898888
Q ss_pred CC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC--CCEEEEEcCCCCCCc-ccccccCCcEE
Q 009172 281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK--GAIVCIDGTFATPLN-QKALSLGADLV 351 (541)
Q Consensus 281 d~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~--gillvvDea~a~~~~-~~~l~~gaDiv 351 (541)
+. .|+++|+++++++++++|++++|+||||.+.|+++|.++|+++ |+++|+|++++.+.. ......++|++
T Consensus 116 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~ 195 (385)
T 2bkw_A 116 RPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFA 195 (385)
T ss_dssp CCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEE
T ss_pred ecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEE
Confidence 76 3799999999753489999999999999999999999999999 999999999875432 23334578999
Q ss_pred EECCccccCCCCCceEEEEEeChHHHH-HHH------------------HHh--hhcC-----CCccHHHHHHHHHhHHH
Q 009172 352 LHSATKFIGGHNDVLAGSISGSGKLVT-QIR------------------NLH--HVLG-----GALNPNAAYLIIRGMKT 405 (541)
Q Consensus 352 v~S~sK~lgg~g~v~gG~vv~~~~li~-~l~------------------~~~--~~~g-----~~~s~~~a~l~l~~l~t 405 (541)
+.|+||+++++.+ .|++++++++++ +++ ... ...+ ++.+....+.+...++.
T Consensus 196 ~~s~~K~~~~~~G--~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~ 273 (385)
T 2bkw_A 196 LTASQKAIGAPAG--LSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKE 273 (385)
T ss_dssp EEESSSTTCCCSC--EEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHH
T ss_pred EecCccccccCCc--ceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHH
Confidence 9999997765432 388888888776 442 110 1111 23444444333334433
Q ss_pred -----HHHHHHHHHHHHHHHHHHH-HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC
Q 009172 406 -----LHLRVQQQNSTALRMAEIL-EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP 479 (541)
Q Consensus 406 -----l~~r~~~~~~na~~la~~L-~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~ 479 (541)
+....++..++++++.+.| ++. ++. +..|. +.. ...+++++|.+++ ..++.+.|...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~-~~~~~----~~~-------~~~~~~~~~~~~~----~~~~~~~l~~~ 336 (385)
T 2bkw_A 274 ILEEGLHKRWDLHREMSDWFKDSLVNGL-QLT-SVSRY----PSN-------MSAHGLTAVYVAD----PPDVIAFLKSH 336 (385)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTT-CCE-ESSCS----SST-------TBCSSCEEEECSC----HHHHHHHHHHT
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHhc-Cce-ecccC----ccc-------ccCCceEEEecCC----HHHHHHHHHHC
Confidence 3344566678888888888 765 442 22111 000 0146789999874 34556666555
Q ss_pred ceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEE-ec-------CCCHHHHHHHHHHHHhh
Q 009172 480 YIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFS-FG-------VEDFEDLKADVLQALHA 540 (541)
Q Consensus 480 ~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlS-vG-------~Ed~edli~dL~~AL~~ 540 (541)
++.++.|..+ ...++.+||| ++ .|+.+.+++.|.+++++
T Consensus 337 gi~v~~g~~~----------------------~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 337 GVVIAGGIHK----------------------DIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp TEECBCCCCT----------------------TTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred CeEEeCCCCc----------------------ccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 7777655321 0124689999 76 25667777777777654
No 117
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.4e-23 Score=222.65 Aligned_cols=286 Identities=14% Similarity=0.102 Sum_probs=192.8
Q ss_pred hHHHHHHHHHHHh----CC----CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC-
Q 009172 211 TTVVVEEKMSALE----GA----ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID- 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~----~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd- 281 (541)
...+|++++++++ |. ++++++++|++|+.+++.+++++||+|+++.|.|+++...+ ...|.++..++
T Consensus 96 g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~----~~~g~~~~~v~~ 171 (447)
T 3b46_A 96 GRPSLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNI----ELCGGKVVYVPI 171 (447)
T ss_dssp CCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHH----HHTTCEEEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHH----HHcCCEEEEEeC
Confidence 3567788888775 42 34666666679999999999999999999999999866433 44566666553
Q ss_pred ----------------CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc--
Q 009172 282 ----------------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-- 340 (541)
Q Consensus 282 ----------------~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-- 340 (541)
..|+++|++++++ ++++|++++|+||||.+++ +++|+++|++||+++|+||+|.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g 250 (447)
T 3b46_A 172 NPPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD 250 (447)
T ss_dssp ECCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS
T ss_pred CCccccccccccccCcccCHHHHHHhhcc-CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC
Confidence 1378999999986 5999999999999999975 88999999999999999999875321
Q ss_pred ----cccc---ccCCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------H
Q 009172 341 ----QKAL---SLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------L 406 (541)
Q Consensus 341 ----~~~l---~~gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l 406 (541)
...+ ..+.|+++.|+||+++.+|. ..|++++ ++++++.+.........+.++...+++...++. +
T Consensus 251 ~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~~~~~~~~ 329 (447)
T 3b46_A 251 SFTRIATLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSINDALKIGYF 329 (447)
T ss_dssp CCCCGGGSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTHH
T ss_pred CCcCHHHcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCCcchHHH
Confidence 1111 34789999999999986653 4789999 999998887655444434455544444444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC--------------HHHHHHH
Q 009172 407 HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD--------------LTATIKF 472 (541)
Q Consensus 407 ~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~--------------~~~~~~~ 472 (541)
....++..++++.+.+.|+++ ++. +..| ..|.+++++++.. .....+|
T Consensus 330 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 391 (447)
T 3b46_A 330 EKMRQEYINKFKIFTSIFDEL-GLP-YTAP----------------EGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRI 391 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCC-EECC----------------SBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCe-ecCC----------------CeeEEEEEecccccCccccccccccccCCCHHHH
Confidence 333455567777788888775 332 2222 1466888888631 0134456
Q ss_pred HHHcC-CCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009172 473 IDALK-IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 538 (541)
Q Consensus 473 l~~L~-~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL 538 (541)
.+.|. ..++.+..|..+..- + + .+..+++||||++. +.++ ++...+.|
T Consensus 392 ~~~l~~~~gV~v~pg~~f~~~--~----~----------~~~~~~~iRls~~~-~~e~-l~~~~~~l 440 (447)
T 3b46_A 392 SHWLINELGVVAIPPTEFYIK--E----H----------EKAAENLLRFAVCK-DDAY-LENAVERL 440 (447)
T ss_dssp HHHHHHHTCEECBCGGGGSCG--G----G----------GGGGTTEEEEECCS-CHHH-HHHHHHHG
T ss_pred HHHHHHhCCEEEECchHhCCC--C----c----------cCCCCCEEEEEEeC-CHHH-HHHHHHHH
Confidence 65553 357777666443210 0 0 00125799999996 3333 34333433
No 118
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.92 E-value=9.8e-24 Score=218.40 Aligned_cols=304 Identities=16% Similarity=0.160 Sum_probs=205.7
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh---ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC-
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al---l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~- 283 (541)
+.+...+++++|++++|.+++++++||++|+.+++.++ +++||+|+++.++|+++...+ ...|+++.+++.+
T Consensus 30 ~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~ 105 (375)
T 2fnu_A 30 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEFSADRNEIITTPISFVATANML----LESGYTPVFAGIKN 105 (375)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSCTHHHHHH----HHTTCEEEECCBCT
T ss_pred CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCCccHhHHHHH----HHCCCEEEEeccCC
Confidence 36788999999999999988899999999999999999 899999999999999876543 3468888888753
Q ss_pred ----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--CcEEEECCc-
Q 009172 284 ----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--ADLVLHSAT- 356 (541)
Q Consensus 284 ----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aDivv~S~s- 356 (541)
|+++|++++++ ++++|++++| +|.+.|+++|.++|+++|+++|+|++++.+........+ .|+++.|++
T Consensus 106 ~~~~d~~~l~~~i~~-~~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~~~i~~~s~s~ 181 (375)
T 2fnu_A 106 DGNIDELALEKLINE-RTKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGFALASVFSFHA 181 (375)
T ss_dssp TSSBCGGGSGGGCCT-TEEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSSEEEEECCT
T ss_pred CCCCCHHHHHhhcCc-CceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeeccccCCeEEEeCCC
Confidence 78899999987 5999888666 999999999999999999999999998765432211122 378888887
Q ss_pred -cccCCCCCceEEEEEeC-hHHHHHHHHHhhhc--------------C--CCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009172 357 -KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVL--------------G--GALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418 (541)
Q Consensus 357 -K~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~--------------g--~~~s~~~a~l~l~~l~tl~~r~~~~~~na~ 418 (541)
|++++ | +||+++.+ ++++++++...... + ..+++..+.+.+..++.+..+.++..++++
T Consensus 182 ~K~~~~-g--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 258 (375)
T 2fnu_A 182 IKPITT-A--EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAPFLMQKREEAAL 258 (375)
T ss_dssp TSSSCC-S--SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CCCccc-c--CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99976 5 46666654 67888777654211 1 135566666665566667777888889999
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHH-HHHHHHHHcCCCceeecCCCcccceecCcc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLT-ATIKFIDALKIPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~-~~~~~l~~L~~~~iavS~G~~~sl~~~pa~ 497 (541)
++.+.|+++|++. +..+.-.. .+.+.++++.++.... ....+.+.|...++.++.+ +......+..
T Consensus 259 ~l~~~L~~~~~~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~-~~p~~~~~~~ 325 (375)
T 2fnu_A 259 TYDRIFKDNPYFT-PLHPLLKD-----------KSSNHLYPILMHQKFFTCKKLILESLHKRGILAQVH-YKPIYQYQLY 325 (375)
T ss_dssp HHHHHHTTCSSEE-ESGGGCSS-----------CCCCSCEEEEECGGGGGGHHHHHHHHHHTTEECBCC-CCCGGGSHHH
T ss_pred HHHHHhhcCCCcc-ccCCCCCC-----------CcceEEEEEEeCccccchHHHHHHHHHHCCCCcccc-ccccccchhh
Confidence 9999999877643 22110000 1123456777753111 3456666666567776632 1111000000
Q ss_pred c-c--cccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 498 M-S--YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 498 ~-~--~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
. . ...++... ...++.|||+++...+++.++.+.++|+
T Consensus 326 ~~~~~~~~~~~~~----~~~~~~lRi~~~~~~t~~~i~~~~~~l~ 366 (375)
T 2fnu_A 326 QQLFNTAPLKSAE----DFYHAEISLPCHANLNLESVQNIAHSVL 366 (375)
T ss_dssp HHHHCCCCCHHHH----HHHHHEEEECCCTTCCHHHHHHHHHHHH
T ss_pred hcCCCccCChHHH----HHHhCEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 0 00011000 1123689999998766666666666554
No 119
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.92 E-value=7.6e-24 Score=225.32 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=194.2
Q ss_pred hhHHHHHHHHHHHh------C--CCcEEEeCCHHHHHHHHHHHhccCCC--------------EEEEc-CCCCcchHHHH
Q 009172 210 PTTVVVEEKMSALE------G--AESTVIMASGMSASTVMLLALVPAGG--------------HIVTT-TDCYRKTRIFI 266 (541)
Q Consensus 210 p~~~~Le~~LA~l~------g--~~~~i~~sSG~~Ai~~al~all~~GD--------------~VIv~-~~~y~~~~~~~ 266 (541)
....+||++||+++ + .++++++++|++|+.+++.+++++|| +|+++ .|+|.++....
T Consensus 83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~ 162 (444)
T 3if2_A 83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVH 162 (444)
T ss_dssp TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCC
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcc
Confidence 34678888888886 2 25788888888999999999999998 88876 88998854211
Q ss_pred H--hhcccCCcEEEEeC----------CCCHHHHHHh---ccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCE
Q 009172 267 E--TVLPKMGITATVID----------PADMEGLEAA---LNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAI 328 (541)
Q Consensus 267 ~--~~l~~~Gi~v~~vd----------~~dle~Le~a---i~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gil 328 (541)
. ..+...|..+..++ ..|+++|+++ +++ ++++|++++|+||||.++| +++|+++|++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~-~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~ 241 (444)
T 3if2_A 163 VEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEG-RIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIP 241 (444)
T ss_dssp SSSCCEEECCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTT-CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCC
T ss_pred cccchhhccCceEEecccccccCccccCCCHHHHHHHHHhcCC-CceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCE
Confidence 0 02445677776655 2489999988 565 5999999999999999999 78899999999999
Q ss_pred EEEEcCCCCCCcc------cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHh
Q 009172 329 VCIDGTFATPLNQ------KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRG 402 (541)
Q Consensus 329 lvvDea~a~~~~~------~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~ 402 (541)
||+|++|+.++.. .+...+.++++.|+||+ +++| ...|++++++++++.++......+...++....++...
T Consensus 242 li~De~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G-~r~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 319 (444)
T 3if2_A 242 LIIDNAYGMPFPNIIYSDAHLNWDNNTILCFSLSKI-GLPG-MRTGIIVADAKVIEAVSAMNAVVNLAPTRFGAAIATPL 319 (444)
T ss_dssp EEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESTTT-TCGG-GCCEEEECCHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred EEEECCCCCcccccccccccccCCCCEEEEechhhc-cCCC-CceEEEEECHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 9999998753321 11224678999999997 4444 45789999999999888766544433344443333333
Q ss_pred HHHH------HH-HHHHHHHHHHHHHHHHHh-CCCce-EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009172 403 MKTL------HL-RVQQQNSTALRMAEILEA-HPKVK-RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI 473 (541)
Q Consensus 403 l~tl------~~-r~~~~~~na~~la~~L~~-~p~v~-~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l 473 (541)
++.. .. ..+...++.+.+.+.|.+ .+.+. .+..|. .|.++++.++........+.
T Consensus 320 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~l~ 383 (444)
T 3if2_A 320 VANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----------------GAIFLWLWFKDLPISTLDLY 383 (444)
T ss_dssp HHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----------------BSSEEEEEETTCSSCHHHHH
T ss_pred HHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----------------ccEEEEEEcCCCCCCHHHHH
Confidence 3221 11 123344566677777765 34432 222221 46788999974112344556
Q ss_pred HHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCH---HHHHHHHHHHHh
Q 009172 474 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDF---EDLKADVLQALH 539 (541)
Q Consensus 474 ~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~---edli~dL~~AL~ 539 (541)
+.|...++.++.|..+..-..... .....+.||||++. +. ++.++.|.+++.
T Consensus 384 ~~l~~~gi~v~~g~~~~~~~~~~~-------------~~~~~~~iRis~~~-~~e~i~~~l~~l~~~~~ 438 (444)
T 3if2_A 384 ERLKAKGTLIVPSEYFFPGVDVSD-------------YQHAHECIRMSIAA-DEQTLIDGIKVIGEVVR 438 (444)
T ss_dssp HHHHHTTEECEEGGGSCTTCCCTT-------------CSGGGSEEEEESSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCeEEecchhhcCCCCCcc-------------cccCCCeEEEEEeC-CHHHHHHHHHHHHHHHH
Confidence 666666888887755321000000 00124789999998 43 344455555544
No 120
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.92 E-value=1.4e-22 Score=207.93 Aligned_cols=277 Identities=17% Similarity=0.169 Sum_probs=188.8
Q ss_pred CchhHHHHHHHHHHHhCCCc-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccC--CcEEEEeCCC-
Q 009172 208 GNPTTVVVEEKMSALEGAES-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKM--GITATVIDPA- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~--Gi~v~~vd~~- 283 (541)
..+..+++++++++++|.+. .+++++|++|+.+++.+++++||+|+++.+.|.+++.. ..+... |.++..++.+
T Consensus 41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~~~~gd~vi~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~ 118 (356)
T 1v72_A 41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDEC--GAPEFFSNGAKLMTVDGPA 118 (356)
T ss_dssp CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSCCTTEEEEECTTSHHHHSST--THHHHHTTSCEEEECCCGG
T ss_pred cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHhcCCCCEEEEcCccchhhhhc--hHHHHHhCCcEEEEecCCC
Confidence 46788999999999999655 57888999999999999999999999999998775432 002333 7888888754
Q ss_pred ---CHHHHHH-hccCC------CeeEEEEeCCCCCCCccc---CHHHHHHHHHhCCCEEEEEcCCCCC------Cccccc
Q 009172 284 ---DMEGLEA-ALNNN------NVSLFFTESPTNPFLRCV---DVKLVSDLCHKKGAIVCIDGTFATP------LNQKAL 344 (541)
Q Consensus 284 ---dle~Le~-ai~~~------~tklV~lesp~NPtG~v~---di~~Ia~la~~~gillvvDea~a~~------~~~~~l 344 (541)
|+++|++ ++++. ++++|++++|+| ||.++ ++++|.++|++||+++|+|++|..+ ......
T Consensus 119 ~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~ 197 (356)
T 1v72_A 119 AKLDIVRLRERTREKVGDVHTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEM 197 (356)
T ss_dssp GCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTT
T ss_pred CeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHh
Confidence 7999999 88751 489999999987 99955 4789999999999999999997532 111111
Q ss_pred --ccCCcEEEECCccccCCCCCceE-EEEEeChHHHHHHHHHhhhcCCCcc--HHHHHHHHHhHHH--HHHHHHHHHHHH
Q 009172 345 --SLGADLVLHSATKFIGGHNDVLA-GSISGSGKLVTQIRNLHHVLGGALN--PNAAYLIIRGMKT--LHLRVQQQNSTA 417 (541)
Q Consensus 345 --~~gaDivv~S~sK~lgg~g~v~g-G~vv~~~~li~~l~~~~~~~g~~~s--~~~a~l~l~~l~t--l~~r~~~~~~na 417 (541)
..+.|+++.|+||+ +++ +| |+++++++++++++......|.... ...+..+.+.++. +....++..+++
T Consensus 198 ~~~~~~d~~~~s~sK~-g~~---~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 273 (356)
T 1v72_A 198 TWKAGVDALSFGATKN-GVL---AAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAA 273 (356)
T ss_dssp TGGGTCCEEEECCGGG-TCS---SCEEEEESSGGGHHHHHHHHHHTTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred hhhhcCCEEEEecccC-CCc---CccEEEEECHHHHhhHHHHhhccCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 23689999999999 432 24 7888899888887765443332222 1222212222221 223455666778
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcc
Q 009172 418 LRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 418 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~ 497 (541)
+++.+.|++.+++.. ..|. .++++++.++. .+.+.|...++.+..|.
T Consensus 274 ~~l~~~L~~~~g~~~-~~~~----------------~~~~~~~~~~~------~~~~~l~~~gi~v~~g~---------- 320 (356)
T 1v72_A 274 QRLAQGLEGLGGVEV-LGGT----------------EANILFCRLDS------AMIDALLKAGFGFYHDR---------- 320 (356)
T ss_dssp HHHHHHHTTCTTEEE-ESCC----------------CSSEEEEEECH------HHHHHHHHTTCBCBCSS----------
T ss_pred HHHHHHHhhCCCcEE-ccCC----------------CccEEEEEcCH------HHHHHHHhcCeEEeccc----------
Confidence 888888987766543 2331 35688888852 34444443455555432
Q ss_pred cccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 498 MSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 498 ~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
++ ++.+||+++...+++.++.+.++|+
T Consensus 321 -------------~~--~~~iRi~~~~~~~~~~i~~~~~~l~ 347 (356)
T 1v72_A 321 -------------WG--PNVVRFVTSFATTAEDVDHLLNQVR 347 (356)
T ss_dssp -------------SS--TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -------------cC--CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 01 4689999987655555555555554
No 121
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.92 E-value=3e-23 Score=219.28 Aligned_cols=288 Identities=10% Similarity=0.082 Sum_probs=193.0
Q ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHH--HHHHHhcc--C---------CCEEEEcCCCCcchHHHHHhhcccCC
Q 009172 210 PTTVVVEEKMSALEGAE--STVIMASGMSAST--VMLLALVP--A---------GGHIVTTTDCYRKTRIFIETVLPKMG 274 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~--~al~all~--~---------GD~VIv~~~~y~~~~~~~~~~l~~~G 274 (541)
+...+|+++||++++.+ +.+++++|++++. +++.+++. + ||+|+++.|+|.++...+ ...|
T Consensus 70 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~----~~~g 145 (423)
T 3ez1_A 70 AGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLL----QTLG 145 (423)
T ss_dssp TCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHH----HHHT
T ss_pred CChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHH----HHcC
Confidence 44679999999999863 4566666678997 88888887 8 599999999998876443 3457
Q ss_pred cEEEEeCC----CCHHHHHHhcc-CCCeeEEEEe-CCCCCCCcccCHH---HHHHHH-HhCCCEEEEEcCCCCCCc-c--
Q 009172 275 ITATVIDP----ADMEGLEAALN-NNNVSLFFTE-SPTNPFLRCVDVK---LVSDLC-HKKGAIVCIDGTFATPLN-Q-- 341 (541)
Q Consensus 275 i~v~~vd~----~dle~Le~ai~-~~~tklV~le-sp~NPtG~v~di~---~Ia~la-~~~gillvvDea~a~~~~-~-- 341 (541)
.++..++. .|+++|+++++ ..++++|+++ +|+||||.+++.+ +|+++| +++|+++|+|++|..... .
T Consensus 146 ~~~~~v~~~~~g~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~ 225 (423)
T 3ez1_A 146 FELLTVDMQSDGPDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEED 225 (423)
T ss_dssp CEEEEEEEETTEECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSS
T ss_pred CEEEeccCCCCCCCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCC
Confidence 77776653 38999999994 2259999865 8999999999977 888888 899999999999874211 1
Q ss_pred -----ccc-------ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH----
Q 009172 342 -----KAL-------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT---- 405 (541)
Q Consensus 342 -----~~l-------~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t---- 405 (541)
... ..+.++++.|+||.+. +| ...|++++++++++.++......+...++....++...++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~-~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~ 303 (423)
T 3ez1_A 226 RAEPVNFVVLARDAGYPDRAFVFASTSKITF-AG-AGLGFVASSEDNIRWLSKYLGAQSIGPNKVEQARHVKFLTEYPGG 303 (423)
T ss_dssp CCCCCCHHHHHHHHTCTTSEEEEEESTTTSC-SS-SSCEEEEECHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHSTTH
T ss_pred CCCCcchhhhhhccCCCCeEEEEeCchhhcc-CC-cceEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHhccch
Confidence 111 3356799999999743 33 34789999999999988877666666666665555444443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHh-CCCc---eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC
Q 009172 406 ----LHLRVQQQNSTALRMAEILEA-HPKV---KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK 477 (541)
Q Consensus 406 ----l~~r~~~~~~na~~la~~L~~-~p~v---~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~ 477 (541)
+....+...++.+.+.+.|.+ .+.+ ..+..|. .|.++++.+++. ....+.+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~l~ 365 (423)
T 3ez1_A 304 LEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPK----------------GGYFISLDTAEP--VADRVVKLAE 365 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCS----------------BSSCEEEEESSS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCC----------------ccEEEEEECCCC--cHHHHHHHHH
Confidence 111222233445555555544 2221 1233332 567899999753 2345555565
Q ss_pred CCceeecCCC-cccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCC---HHHHHHHHHHHHh
Q 009172 478 IPYIAPSFGG-CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED---FEDLKADVLQALH 539 (541)
Q Consensus 478 ~~~iavS~G~-~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed---~edli~dL~~AL~ 539 (541)
..++.+..|+ .+.. . .+..++.||||++..+ .++.++.|.++++
T Consensus 366 ~~gv~v~~~g~~~~~----~--------------~~~~~~~iRis~~~~~~~~i~~~~~~l~~~l~ 413 (423)
T 3ez1_A 366 AAGVSLTPAGATYPA----G--------------QDPHNRNLRLAPTRPPVEEVRTAMQVVAACIR 413 (423)
T ss_dssp HTTEECCCTTTTSST----T--------------CCSSSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred HCCcEEecCcccccC----C--------------CCCCCCeEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 6678887733 3211 0 0123689999998643 4445555555554
No 122
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.92 E-value=1.1e-23 Score=215.37 Aligned_cols=284 Identities=13% Similarity=0.109 Sum_probs=193.5
Q ss_pred hhHHHHHHHHHHHhCCC---c-EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC---
Q 009172 210 PTTVVVEEKMSALEGAE---S-TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~---~-~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~--- 282 (541)
+...+++++|++++|.+ + .+++++|++|+.+++.++++ |+|+++++.|++. . +...++..|+++..++.
T Consensus 33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~~~~~-~-~~~~~~~~g~~~~~v~~~~~ 108 (353)
T 2yrr_A 33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLDR--GPVLVLVNGAFSQ-R-VAEMAALHGLDPEVLDFPPG 108 (353)
T ss_dssp HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCSC--CCEEEEECSHHHH-H-HHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhcC--CcEEEEcCCCchH-H-HHHHHHHcCCceEEEeCCCC
Confidence 44789999999999973 4 44556667999999998876 8999999999875 2 22345567888877764
Q ss_pred --CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCcccc
Q 009172 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (541)
Q Consensus 283 --~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK~l 359 (541)
.|+++|+++++++++++|++++|+||||.+.|+++|.++|+++|+++|+|++|+.+.. ......+.|+++.|++|++
T Consensus 109 ~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~ 188 (353)
T 2yrr_A 109 EPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCL 188 (353)
T ss_dssp SCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTT
T ss_pred CCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccc
Confidence 4799999999762489999999999999999999999999999999999999864322 2223457899999999976
Q ss_pred CCCCCceEEEEEeChHHHHHHHH-------------H--hhhcCCCccHHHHHHHHHhHHH-----HHHHHHHHHHHHHH
Q 009172 360 GGHNDVLAGSISGSGKLVTQIRN-------------L--HHVLGGALNPNAAYLIIRGMKT-----LHLRVQQQNSTALR 419 (541)
Q Consensus 360 gg~g~v~gG~vv~~~~li~~l~~-------------~--~~~~g~~~s~~~a~l~l~~l~t-----l~~r~~~~~~na~~ 419 (541)
+++.+ .|+++++++++++++. . .....++.+......+...++. +....++..+++++
T Consensus 189 ~~~~g--~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 266 (353)
T 2yrr_A 189 SAPPG--LAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAW 266 (353)
T ss_dssp CCCSS--CEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred cCCCc--eEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 65432 4899999988876541 0 1112234444443333333333 33445667788888
Q ss_pred HHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccc
Q 009172 420 MAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMS 499 (541)
Q Consensus 420 la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~ 499 (541)
+.+.|++. ++. +..+. ...+.+++|.++.+ ....++.+.|...++.+..|..+
T Consensus 267 l~~~L~~~-g~~-~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~g~~~---------- 319 (353)
T 2yrr_A 267 VLEELKAR-GFR-PYPKA--------------SPLPTVLVVRPPEG-VDADRLVRALYAEGVAVAGGIGP---------- 319 (353)
T ss_dssp HHHHHHHT-TCE-ESCSS--------------SBCTTEEEEECCTT-CCHHHHHHHHHHTTEECEECCGG----------
T ss_pred HHHHHHHC-CCc-cccCc--------------cCCCeEEEEECCCC-CCHHHHHHHHHHCCEEEeCCccc----------
Confidence 88888876 443 22121 01356788988532 12345555555457766655321
Q ss_pred cccCCHHHHHhcCCCCCeEEEEecC----CCHH-HHHHHHHHHHh
Q 009172 500 YWDLSQSERLKYGIMDNLVRFSFGV----EDFE-DLKADVLQALH 539 (541)
Q Consensus 500 ~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~e-dli~dL~~AL~ 539 (541)
..++.+|+|++. ++.+ .+++.|.++++
T Consensus 320 -------------~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~ 351 (353)
T 2yrr_A 320 -------------TRGQVLRLGLMGEGARREAYQAFLKALDRALA 351 (353)
T ss_dssp -------------GTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred -------------cCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence 024689999932 3444 55666666654
No 123
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.92 E-value=1.5e-23 Score=219.91 Aligned_cols=291 Identities=14% Similarity=0.144 Sum_probs=201.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHhhc---
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVL--- 270 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~-------~G-D~VIv~~~~y~~~~~~~~~~l--- 270 (541)
+.+.+++++...+++++|++++|.++++++++|++|+.+++..++. +| |+|++.++.|++.........
T Consensus 73 ~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~ 152 (406)
T 4adb_A 73 HTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQP 152 (406)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCG
T ss_pred cccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCc
Confidence 4446678899999999999999999899999999999999988765 66 999999999998643322211
Q ss_pred ------ccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCccc-----CHHHHHHHHHhCCCEEEEEcCCCCCC
Q 009172 271 ------PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV-----DVKLVSDLCHKKGAIVCIDGTFATPL 339 (541)
Q Consensus 271 ------~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~-----di~~Ia~la~~~gillvvDea~a~~~ 339 (541)
...+..+..++..|+++|++++++ ++++|+++ |+||+|.+. ++++|.++|++||++||+||+|....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~ 230 (406)
T 4adb_A 153 AYSQDFAPLPADIRHAAYNDINSASALIDD-STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVG 230 (406)
T ss_dssp GGTGGGCSCCSSEEEECTTCHHHHHTTCST-TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred cccccCCCCCCCceEeCCCcHHHHHHHhcC-CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 122346677777899999999986 59999998 999999765 58899999999999999999986321
Q ss_pred ------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH--HHHHH
Q 009172 340 ------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (541)
Q Consensus 340 ------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl--~~r~~ 411 (541)
.........|++ |+||.+++ | ..+|++++++++++.+...........++..+..+...++.+ +...+
T Consensus 231 ~~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~ 306 (406)
T 4adb_A 231 RTGELYAYMHYGVTPDLL--TTAKALGG-G-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKVLELINTPEMLN 306 (406)
T ss_dssp TTSSSSHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHSSHHHHH
T ss_pred ccchhHHHHhcCCCCCEE--EechhhcC-C-CCeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 112233456777 56999994 3 457899999998887765443334456677777766666654 34455
Q ss_pred HHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCccc
Q 009172 412 QQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCES 490 (541)
Q Consensus 412 ~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G~~~s 490 (541)
+..++++.+.+.|++... .++.. ...++.|.+++|++++.. ....++.+.|...++.+..+
T Consensus 307 ~~~~~~~~l~~~l~~~~~----~~~~~----------~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~---- 368 (406)
T 4adb_A 307 GVKQRHDWFVERLNTINH----RYGLF----------SEVRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIA---- 368 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHCCE----------EEEEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEES----
T ss_pred HHHHHHHHHHHHHHHHHH----hCCCc----------eEEEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeec----
Confidence 566777777777765311 00100 011335789999997521 13455666665556555432
Q ss_pred ceecCcccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 491 IVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 491 l~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
.++.|||+++... .+++++.|.++++
T Consensus 369 -----------------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~ 398 (406)
T 4adb_A 369 -----------------------GGNVVRFAPALNVSEEEVTTGLDRFAAACE 398 (406)
T ss_dssp -----------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCeEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1478999766543 4455555555554
No 124
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.92 E-value=1.5e-23 Score=217.44 Aligned_cols=281 Identities=12% Similarity=0.086 Sum_probs=193.8
Q ss_pred CCCchhHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHH---hc---cCC-CEEEEcCCCCcchHHHHHhhccc----C
Q 009172 206 RYGNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLA---LV---PAG-GHIVTTTDCYRKTRIFIETVLPK----M 273 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g~-~~~i~~sSG~~Ai~~al~a---ll---~~G-D~VIv~~~~y~~~~~~~~~~l~~----~ 273 (541)
+|+++...+|+++|++++|. ++++++++|++|+.+++.. +. ++| |+|++++++|++........... .
T Consensus 66 ~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~ 145 (375)
T 2eh6_A 66 LYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHK 145 (375)
T ss_dssp TBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTT
T ss_pred ccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccC
Confidence 46678889999999999998 7788888899999998864 35 788 99999999998865433222111 1
Q ss_pred Cc-----EEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCC-c---
Q 009172 274 GI-----TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPL-N--- 340 (541)
Q Consensus 274 Gi-----~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~-~--- 340 (541)
|. .+..++..|+++|++++++ ++++|++++|+||||.+.| +++|.++|+++|+++|+|++|+... .
T Consensus 146 ~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~ 224 (375)
T 2eh6_A 146 GFEPLVPGFSYAKLNDIDSVYKLLDE-ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF 224 (375)
T ss_dssp TTCSCCSSEEEECTTCHHHHHTTCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred CCCCCCCCceeCCCchHHHHHHHhcC-CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcc
Confidence 22 2666677799999999987 5999999999999999988 9999999999999999999987421 1
Q ss_pred ccccccC--CcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 009172 341 QKALSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTAL 418 (541)
Q Consensus 341 ~~~l~~g--aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~ 418 (541)
......| .|++ |+||++++ | ...|+++.++++++.++..........++..+..+...++.+....++..++++
T Consensus 225 ~~~~~~~~~~d~~--s~SK~~~~-g-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 300 (375)
T 2eh6_A 225 YAYQHFNLKPDVI--ALAKGLGG-G-VPIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTVVVDEVEKLLPHVREVGN 300 (375)
T ss_dssp SGGGGGTCCCSEE--EECGGGGT-T-SCCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCCCEE--EEcccccC-C-CCeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345 7877 56699986 3 346788888877766654211122234566666666667666545566667788
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~ 498 (541)
++.+.|++.+.. . ..+.|++++++++.+ ...+.+.|...++.+..+
T Consensus 301 ~l~~~L~~~~~~-~------------------~~~~g~~~~~~~~~~---~~~~~~~l~~~gi~~~~~------------ 346 (375)
T 2eh6_A 301 YFKEKLKELGKG-K------------------VKGRGLMLGLELERE---CKDYVLKALEKGLLINCT------------ 346 (375)
T ss_dssp HHHHHHHHTTSS-E------------------EEEETTEEEEECSSC---CHHHHHHHHHTTEECEEE------------
T ss_pred HHHHHHHHHhcC-C------------------ceEEEEEEEEEEcCc---HHHHHHHHHHCCCEEecC------------
Confidence 888888875430 0 122577899998743 223444443334433321
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++.|||+++...+++.++.+.++|++
T Consensus 347 ---------------~~~~iRi~~~~~~~~~~i~~~~~~l~~ 373 (375)
T 2eh6_A 347 ---------------AGKVLRFLPPLIIQKEHIDRAISVLRE 373 (375)
T ss_dssp ---------------TTTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred ---------------CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 147899998865555555666666543
No 125
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.92 E-value=2.8e-23 Score=215.29 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=135.6
Q ss_pred hhHHHHHHHHHHHhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC---
Q 009172 210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP--- 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~---~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~--- 282 (541)
+..+++++++++++|.+ +.++ ++||++|+.+++.+++++||+|+++.+.|.+.. +...+...|+++..++.
T Consensus 52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~ 129 (376)
T 3f0h_A 52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKVLVIDGGSFGHR--FVQLCEIHEIPYVALKLEHG 129 (376)
T ss_dssp HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHHCCTTCCEEEEESSHHHHH--HHHHHHHTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhccCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEEeCCCC
Confidence 56788999999999975 4555 456689999999999999999999998777633 22345556777776643
Q ss_pred --CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCcccc
Q 009172 283 --ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSATKFI 359 (541)
Q Consensus 283 --~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~sK~l 359 (541)
.|++++++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......|+|+++.|+||++
T Consensus 130 ~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l 208 (376)
T 3f0h_A 130 KKLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVL 208 (376)
T ss_dssp CCCCHHHHHTTTTS-CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTT
T ss_pred CCCCHHHHHHhhcc-CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccc
Confidence 389999998876 599999999999999999999999999999999999999875432 3334568999999999999
Q ss_pred CCCCCceEEEEEeChHHHHHHHH
Q 009172 360 GGHNDVLAGSISGSGKLVTQIRN 382 (541)
Q Consensus 360 gg~g~v~gG~vv~~~~li~~l~~ 382 (541)
+++.+ .|+++.++++++.+..
T Consensus 209 ~~~~G--~g~~~~~~~~~~~~~~ 229 (376)
T 3f0h_A 209 ACPPG--ISVIVLAPRGVERVEK 229 (376)
T ss_dssp CCCSS--CEEEEECHHHHHHHHT
T ss_pred cCCCc--eEEEEECHHHHHHhhc
Confidence 94432 4788899988887763
No 126
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.92 E-value=2.8e-23 Score=217.52 Aligned_cols=290 Identities=13% Similarity=0.129 Sum_probs=201.1
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc-------cCCCEEEEcCCCCcchHHHH------
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV-------PAGGHIVTTTDCYRKTRIFI------ 266 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all-------~~GD~VIv~~~~y~~~~~~~------ 266 (541)
..|.|+++.++..+++++++++++|.+++++++||++|+..++..+. .++|+||+.++.|++.....
T Consensus 68 ~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~ 147 (395)
T 3nx3_A 68 LLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTAN 147 (395)
T ss_dssp CSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCC
T ss_pred ccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCC
Confidence 34667778899999999999999998889999999999999998765 35799999999998753221
Q ss_pred ---HhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCC-
Q 009172 267 ---ETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP- 338 (541)
Q Consensus 267 ---~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~- 338 (541)
...+...+.++..++..|+++|++++++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g 226 (395)
T 3nx3_A 148 EKYQKPFKPLISGVKFAKYNDISSVEKLVNE-KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMG 226 (395)
T ss_dssp HHHHGGGCSCCSCEEEECTTCHHHHHTTCCT-TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTT
T ss_pred cccccccCCCCCCcEEeCCCCHHHHHHhccC-CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 1222334567777888899999999986 5999999999999999987 999999999999999999997632
Q ss_pred -----CcccccccCCcEEEECCccccCCCCCceEEEEEeChHH-HHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHH
Q 009172 339 -----LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRV 410 (541)
Q Consensus 339 -----~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~l-i~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~--~r~ 410 (541)
..........|++ +++|.+++ | ...|++++++++ ++.++..........++..+..+...++.+. ...
T Consensus 227 ~~g~~~~~~~~~~~~d~~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aal~~~~~~~~~ 302 (395)
T 3nx3_A 227 RSGKFFAYEHAQILPDIM--TSAKALGC-G-LSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFEIFKEEKIL 302 (395)
T ss_dssp TTSSSSGGGGGTCCCSEE--EECGGGTT-T-SCCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cCCcchhHHhcCCCCCEE--EecccccC-C-CceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHHHHHHHHhhHHH
Confidence 1122223345665 57799986 3 457899999988 7776543322333456777766666666442 223
Q ss_pred HHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCC
Q 009172 411 QQQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFG 486 (541)
Q Consensus 411 ~~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G 486 (541)
++..++.+++.+.|.+ +|.+..+ ++.|++++|++++. .....+.+.|...++.++.+
T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~ 363 (395)
T 3nx3_A 303 ENVNKLTPYLEQSLDELINEFDFCKKR------------------KGLGFMQGLSLDKS-VKVAKVIQKCQENALLLISC 363 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EeEEEEEEEEeCCc-chHHHHHHHHHHCCCEEecC
Confidence 4444555555555543 3432221 23578999999753 23455666665556544432
Q ss_pred CcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 487 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 487 ~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
.++.|||+++.. +.+++++.|++++++
T Consensus 364 ---------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 394 (395)
T 3nx3_A 364 ---------------------------GENDLRFLPPLILQKEHIDEMSEKLRKALKS 394 (395)
T ss_dssp ---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 147899987654 445555556655543
No 127
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.91 E-value=3.1e-23 Score=220.39 Aligned_cols=288 Identities=14% Similarity=0.127 Sum_probs=193.0
Q ss_pred CCCch-hHHHHHHHHHHHhC----------CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcc-cC
Q 009172 206 RYGNP-TTVVVEEKMSALEG----------AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KM 273 (541)
Q Consensus 206 R~~~p-~~~~Le~~LA~l~g----------~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~-~~ 273 (541)
+|+.+ ...+|+++|+++++ .++++++++|++|+.+++.+++++||+|+++.+.|++... .+. ..
T Consensus 81 ~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~----~~~~~~ 156 (435)
T 3piu_A 81 LFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDR----DLKWRT 156 (435)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHH----HTTTTT
T ss_pred ccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHH----HHHHhc
Confidence 34443 35789999999887 3567888888899999999999999999999999998653 333 56
Q ss_pred CcEEEEeCC-------CCHHHHHHhccC-----CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEEcCCCCC
Q 009172 274 GITATVIDP-------ADMEGLEAALNN-----NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATP 338 (541)
Q Consensus 274 Gi~v~~vd~-------~dle~Le~ai~~-----~~tklV~lesp~NPtG~v~di---~~Ia~la~~~gillvvDea~a~~ 338 (541)
|.++..++. .|+++|++++++ .++++|++++|+||||.+++. ++|.++|++||+++|+||+|...
T Consensus 157 g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~ 236 (435)
T 3piu_A 157 GVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGT 236 (435)
T ss_dssp CCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGG
T ss_pred CCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEecccccc
Confidence 888887764 378999998864 258999999999999999875 68888899999999999998652
Q ss_pred Cc-----cccc----c---------cCCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHH
Q 009172 339 LN-----QKAL----S---------LGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLI 399 (541)
Q Consensus 339 ~~-----~~~l----~---------~gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~ 399 (541)
.. .... + .+.++++.|+||.+|.+| ...|++++ ++++.+.++......+. ++.....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 313 (435)
T 3piu_A 237 AFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPG-FRVGAIYSNDDMVVAAATKMSSFGLV--SSQTQHLL 313 (435)
T ss_dssp CCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGG-GCEEEEEESCHHHHHHHHHHGGGSCC--CHHHHHHH
T ss_pred ccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCc-eeEEEEEeCCHHHHHHHHHHhhcCCC--CHHHHHHH
Confidence 21 1111 1 223388999999997554 34688888 56677777665443322 33333222
Q ss_pred HHhHH-------HHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-----HH
Q 009172 400 IRGMK-------TLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-----LT 467 (541)
Q Consensus 400 l~~l~-------tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-----~~ 467 (541)
...++ .+..+.++..++++.+.+.|+++ ++. + ++. ..|.++++.++.. ..
T Consensus 314 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~-~~~---------------~~g~~~~~~l~~~~~~~~~~ 375 (435)
T 3piu_A 314 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GIS-C-LNG---------------NAGLFCWVDMRHLLRSNTFE 375 (435)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCE-E-CCC---------------CSSSEEEEECGGGSSSSSHH
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-c-cCC---------------CeeEEEEEEcccccccCCch
Confidence 22222 22333455567777888888765 332 2 111 1457889998641 11
Q ss_pred HHHHHHHHc-CCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC---CHHHHHHHHHHHHh
Q 009172 468 ATIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE---DFEDLKADVLQALH 539 (541)
Q Consensus 468 ~~~~~l~~L-~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E---d~edli~dL~~AL~ 539 (541)
...++.+.| +..++.+..|..+.. ..++.+||+++.. +.++.++.|.++++
T Consensus 376 ~~~~~~~~l~~~~gi~v~~g~~~~~---------------------~~~~~iRi~~~~~~~e~i~~~l~~l~~~l~ 430 (435)
T 3piu_A 376 AEMELWKKIVYEVHLNISPGSSCHC---------------------TEPGWFRVCFANLPERTLDLAMQRLKAFVG 430 (435)
T ss_dssp HHHHHHHHHHHTSCEECEEGGGGTC---------------------SSTTEEEEECSSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCEEEeCCcccCC---------------------CCCCEEEEEeeCCCHHHHHHHHHHHHHHHH
Confidence 344555555 333776665543210 1357999999863 44555666666654
No 128
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.91 E-value=3.8e-23 Score=217.47 Aligned_cols=295 Identities=13% Similarity=0.088 Sum_probs=190.8
Q ss_pred hhHHHHHHHHHHHh------CC--CcEEEeCCHHHHHHHHHHHhccCCC-----EEEEc-CCCCcchHHHHHh--hcccC
Q 009172 210 PTTVVVEEKMSALE------GA--ESTVIMASGMSASTVMLLALVPAGG-----HIVTT-TDCYRKTRIFIET--VLPKM 273 (541)
Q Consensus 210 p~~~~Le~~LA~l~------g~--~~~i~~sSG~~Ai~~al~all~~GD-----~VIv~-~~~y~~~~~~~~~--~l~~~ 273 (541)
+...+|+++||+++ +. ++++++++|++|+.+++.+++++|| +|+++ .|+|++....... .....
T Consensus 75 ~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~ 154 (417)
T 3g7q_A 75 QGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA 154 (417)
T ss_dssp TSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEEC
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccc
Confidence 45678899999886 22 4678888888999999999999988 99997 9999886533211 12334
Q ss_pred CcEEEEeCC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc----
Q 009172 274 GITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (541)
Q Consensus 274 Gi~v~~vd~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~---- 340 (541)
+..+..++. .|+++|+ +++ ++++|++++|+||||.++| +++|.++|++||+++|+|++|+.++.
T Consensus 155 ~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~ 231 (417)
T 3g7q_A 155 RPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIF 231 (417)
T ss_dssp CCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBC
T ss_pred cCcccccCCcccccccCHHHhc--ccc-CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccc
Confidence 556655543 2777777 565 5999999999999999999 88999999999999999999875321
Q ss_pred --ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH------HHH-HHH
Q 009172 341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT------LHL-RVQ 411 (541)
Q Consensus 341 --~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t------l~~-r~~ 411 (541)
..+...+.++++.|+||+ +++| ...|++++++++++.+.......+...++....++...++. +.. ..+
T Consensus 232 ~~~~~~~~~~~i~~~s~sK~-~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 309 (417)
T 3g7q_A 232 SEARPLWNPNIILCMSLSKL-GLPG-SRCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEMIKRNDLLRLSETVIKP 309 (417)
T ss_dssp SCCCCCCCTTEEEEEESGGG-TCTT-SCCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHTTCHHHHHHHTHHH
T ss_pred cccccCCCCCEEEEEechhc-cCCC-cceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 112234678999999995 5554 45789999999999988776655554455544444433332 111 223
Q ss_pred HHHHHHHHHHHHHHh-CCCce-EEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcc
Q 009172 412 QQNSTALRMAEILEA-HPKVK-RVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCE 489 (541)
Q Consensus 412 ~~~~na~~la~~L~~-~p~v~-~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~ 489 (541)
...++.+.+.+.|.+ .+.+. .+..| ..|.+++++++........+.+.|...++.+..|..+
T Consensus 310 ~~~~~~~~~~~~l~~~l~~~~~~~~~~----------------~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f 373 (417)
T 3g7q_A 310 FYYQRVQQTIAIIRRYLSEERCLIHKP----------------EGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYF 373 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCTTTCEEECC----------------CBSSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGG
T ss_pred HHHHHHHHHHHHHHHhcccCCceeeCC----------------CcceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhh
Confidence 344566677777766 34321 23222 1567889998741123345556665567777776543
Q ss_pred cceecCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 490 SIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 490 sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..-... . .+..++.||||++.. +.++.++.|.++++
T Consensus 374 ~~~~~~----~----------~~~~~~~iRis~~~~~~~i~~~~~~l~~~l~ 411 (417)
T 3g7q_A 374 FPGLDK----P----------WPHTHQCMRMNYVPEPDKIEAGVKILAEEIE 411 (417)
T ss_dssp CTTBSS----C----------CGGGGGEEEEESCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCcc----c----------cccCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 210000 0 001147999999971 23444555555554
No 129
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.91 E-value=1.4e-22 Score=214.17 Aligned_cols=210 Identities=14% Similarity=0.162 Sum_probs=164.3
Q ss_pred hHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC------
Q 009172 211 TTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA------ 283 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~------ 283 (541)
..+++++.+++++|.++.++++||++|+.+++.++ +++||+|+++.++|.++...+ ...|.++++++.+
T Consensus 43 l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~ 118 (418)
T 2c81_A 43 MERKFAKAFADFNGVPYCVPTTSGSTALMLALEALGIGEGDEVIVPSLTWIATATAV----LNVNALPVFVDVEADTYCI 118 (418)
T ss_dssp HHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCTHHHHHH----HHTTCEEEEECBCTTTCSB
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCccHhHHHHH----HHcCCEEEEEecCCCCCCc
Confidence 48999999999999988999999999999999999 899999999999999876443 4568888887643
Q ss_pred CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc--cccccCCcEEEECC--cccc
Q 009172 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSA--TKFI 359 (541)
Q Consensus 284 dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~--~~l~~gaDivv~S~--sK~l 359 (541)
|+++|++++++ ++++|++ +||+|.+.|+++|.++|+++|++||+|++|+.+... .+...-.|+++.|+ ||++
T Consensus 119 d~~~l~~~i~~-~~~~v~~---~~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~s~s~~K~~ 194 (418)
T 2c81_A 119 DPQLIKSAITD-KTKAIIP---VHLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWNNQRAGTIGDIGAFSCQQGKVL 194 (418)
T ss_dssp CHHHHGGGCCT-TEEEECC---BCCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSS
T ss_pred CHHHHHHhhCC-CCeEEEE---eCCcCCcccHHHHHHHHHHCCCEEEEECcccccCccCCEecccccceEEEeccCCccc
Confidence 79999999987 5999986 568999999999999999999999999998876421 22222247888887 9999
Q ss_pred CCCCCceEEEEEeC-hHHHHHHHHHhhh--------------cC------------CCccHHHHHHHHHhHHHHHHHHHH
Q 009172 360 GGHNDVLAGSISGS-GKLVTQIRNLHHV--------------LG------------GALNPNAAYLIIRGMKTLHLRVQQ 412 (541)
Q Consensus 360 gg~g~v~gG~vv~~-~~li~~l~~~~~~--------------~g------------~~~s~~~a~l~l~~l~tl~~r~~~ 412 (541)
++ | .+|+++++ ++++++++..... +. ..+.+..+.+....++.+..+.++
T Consensus 195 ~~-g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~ 271 (418)
T 2c81_A 195 TA-G--EGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAI 271 (418)
T ss_dssp CS-S--SCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CC-C--CeEEEEECCHHHHHHHHHHHHhCccccccccccccchhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 88 5 47888884 6788777654321 00 013445555555566667777778
Q ss_pred HHHHHHHHHHHHHhCCCce
Q 009172 413 QNSTALRMAEILEAHPKVK 431 (541)
Q Consensus 413 ~~~na~~la~~L~~~p~v~ 431 (541)
..++++++.+.|.+.|++.
T Consensus 272 ~~~~~~~l~~~L~~~~g~~ 290 (418)
T 2c81_A 272 REKNAMFLNDALSKIDGIK 290 (418)
T ss_dssp HHHHHHHHHHHHTTSTTEE
T ss_pred HHHHHHHHHHHhccCCCcc
Confidence 8888899999998877653
No 130
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.91 E-value=5.1e-23 Score=217.95 Aligned_cols=307 Identities=16% Similarity=0.174 Sum_probs=186.9
Q ss_pred chhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcc-------------hHHH
Q 009172 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRK-------------TRIF 265 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all--------~~GD~VIv~~~~y~~-------------~~~~ 265 (541)
.+..++++++|++++|.+ +.+++++|++|+.+++.+++ ++||+|++..|.|++ +...
T Consensus 60 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~ 139 (432)
T 3a9z_A 60 KDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLP 139 (432)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHH
Confidence 345689999999999974 56777777899999998876 589877777766654 3333
Q ss_pred HHhhcccCCcEEEEeCC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC----------CEE
Q 009172 266 IETVLPKMGITATVIDP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG----------AIV 329 (541)
Q Consensus 266 ~~~~l~~~Gi~v~~vd~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g----------ill 329 (541)
+..+.+..|.++++++. .|+++|++++++ ++++|++++|+||||.+.|+++|.++|+++| +++
T Consensus 140 ~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~l 218 (432)
T 3a9z_A 140 LEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLV 218 (432)
T ss_dssp HHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCCT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEE
T ss_pred HHHHHHhcCcEEEEEecCcccCCcCHHHHHHhccC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEE
Confidence 43444556888888864 378999999987 5999999999999999999999999999999 999
Q ss_pred EEEcCCCCCCc-ccccccCCcEEEECCccccCCCCCceEEEEEeChHH-HHHHHHH-------hhhcCCCccHHHHHHHH
Q 009172 330 CIDGTFATPLN-QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKL-VTQIRNL-------HHVLGGALNPNAAYLII 400 (541)
Q Consensus 330 vvDea~a~~~~-~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~l-i~~l~~~-------~~~~g~~~s~~~a~l~l 400 (541)
|+|++|+.+.. .+....+.|+++.|+||++| +. .|+++++++. ...++.. .....++.+....+.+.
T Consensus 219 ivDea~~~~~~~~~~~~~~~d~~~~s~~K~~g-~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 294 (432)
T 3a9z_A 219 HTDAAQALGKRRVDVEDLGVDFLTIVGHKFYG-PR---IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLG 294 (432)
T ss_dssp EEECTTTTTTSCCCHHHHCCSEEEEEGGGTTC-CS---CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHH
T ss_pred EEEchhhhCCcccChhhcCCCEEEEehhHhcC-Cc---ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHH
Confidence 99999876532 23334578999999999885 32 6888887654 2222211 11112234444444433
Q ss_pred HhHHHH----HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc
Q 009172 401 RGMKTL----HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL 476 (541)
Q Consensus 401 ~~l~tl----~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L 476 (541)
..++.+ ....++..++++++.+.|++.+++. +.+++-. ++ ....+++++|.+++.......+++.+
T Consensus 295 aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l 364 (432)
T 3a9z_A 295 KAADLVSENCETYEAHMRDIRDYLEERLEAEFGKR-IHLNSRF--PG-------VERLPNTCNFSIQGSQLRGYMVLAQC 364 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-EEESSCC--TT-------CCBCTTEEEEEECSTTCCHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCCc-EEEeCCC--Cc-------ccCCCCEEEEEeCCCCCcHHHHHHHh
Confidence 444433 3334455566777777777654332 2211110 00 01245688899874111234566666
Q ss_pred CCCceeecCCCcccceecCcccccccCCHHHHHhcCCC----CCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 477 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM----DNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 477 ~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~----~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
. ++.+..|..+.. . +...........|+. .+.||||++.. +.+.+++.|+++++
T Consensus 365 ~--~i~~~~G~~~~~----~---~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~ 426 (432)
T 3a9z_A 365 Q--TLLASVGASCHS----D---HEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN 426 (432)
T ss_dssp S--SEECBSSCGGGG----G---GTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred c--CeEEeccccccC----C---CCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 4 666776654321 0 000011223344553 47999999964 34555555555544
No 131
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.91 E-value=1.7e-22 Score=219.55 Aligned_cols=287 Identities=13% Similarity=0.063 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhc-cCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALV-PAGGHIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g----~~~~i~~sSG~~Ai~~al~all-~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
...+|++.+++++ | .++++++++|++|+.+++.+++ ++||+|+++.|+|..+... +...|.++..++
T Consensus 135 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd~Vlv~~p~y~~~~~~----~~~~g~~~~~~~ 210 (500)
T 3tcm_A 135 GIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS----IALHGGALVPYY 210 (500)
T ss_dssp CCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTEEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred ChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCEEEEeCCCcHhHHHH----HHHcCCEEEEEe
Confidence 3556777777765 3 2467788888899999999998 8999999999999986543 344577777765
Q ss_pred -------CCCHHHHHHhccCC-----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCccc----
Q 009172 282 -------PADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK---- 342 (541)
Q Consensus 282 -------~~dle~Le~ai~~~-----~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~---- 342 (541)
..|+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|+++|+|++|.......
T Consensus 211 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~ 290 (500)
T 3tcm_A 211 LNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKF 290 (500)
T ss_dssp CBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCC
T ss_pred cccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCC
Confidence 34899999998751 4899999999999999987 5567777999999999999987643211
Q ss_pred -cc-----ccC------CcEEEECCcccc-CCCCCceEEEEEe---ChHHHHHHHHHhhhcCCCccHHHHHHHHHhH---
Q 009172 343 -AL-----SLG------ADLVLHSATKFI-GGHNDVLAGSISG---SGKLVTQIRNLHHVLGGALNPNAAYLIIRGM--- 403 (541)
Q Consensus 343 -~l-----~~g------aDivv~S~sK~l-gg~g~v~gG~vv~---~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l--- 403 (541)
++ .++ ..++++|+||.+ |..| ..+|++++ ++++++.+...... ..+.+....+++...+
T Consensus 291 ~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G-~R~G~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~q~~~~~~l~~~ 368 (500)
T 3tcm_A 291 HSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECG-KRGGYFEITGFSAPVREQIYKIASV-NLCSNITGQILASLVMNPP 368 (500)
T ss_dssp CCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGG-GCCEEEEEESCCTTHHHHHHHHHHT-TCCCCHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHhccccCCeEEEEEecCCccCCCCCc-cceEEEEEeCCCHHHHHHHHHHHhc-ccCCCHHHHHHHHHHhcCc
Confidence 10 111 137788999998 4333 45788887 88898888776542 2333443333332222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHH----
Q 009172 404 -----------KTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTA---- 468 (541)
Q Consensus 404 -----------~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~---- 468 (541)
+.+....++..++++.+.+.|+++|++.. ..|. .|.++++.+.-....
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~-~~~~----------------g~~~~~~~~~lp~~~~~~~ 431 (500)
T 3tcm_A 369 KASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITC-NEAE----------------GAMYVFPQICLPQKAIEAA 431 (500)
T ss_dssp CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEC-CCCC----------------BTTEECCEECCCHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEE-ecCC----------------eEEEEeeeecCchhhHHHH
Confidence 34445556677888899999988766532 1111 233445444321110
Q ss_pred -------HHH-HHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHH
Q 009172 469 -------TIK-FIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQAL 538 (541)
Q Consensus 469 -------~~~-~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL 538 (541)
... +.+.|+..++.+..|..+.. + -..+++|+|++. ++.++.++.|.+++
T Consensus 432 ~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~---~-----------------~g~~~iRis~~~~~e~i~~~i~~l~~~~ 491 (500)
T 3tcm_A 432 KAANKAPDAFYALRLLESTGIVVVPGSGFGQ---V-----------------PGTWHFRCTILPQEDKIPAVISRFTVFH 491 (500)
T ss_dssp HHHTSCHHHHHHHHHHHHHCEECEESTTTCC---C-----------------TTCCBEEEESCSCTTTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHCCEEEEeCcccCC---C-----------------CCCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 111 12334445777777654321 0 125689999984 45677788888776
Q ss_pred hh
Q 009172 539 HA 540 (541)
Q Consensus 539 ~~ 540 (541)
++
T Consensus 492 ~~ 493 (500)
T 3tcm_A 492 EA 493 (500)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 132
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.91 E-value=8.1e-23 Score=214.94 Aligned_cols=251 Identities=18% Similarity=0.190 Sum_probs=173.4
Q ss_pred chhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc------cCCCE-EEEcCCCCcchHHHHHhhcccC--CcEE
Q 009172 209 NPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV------PAGGH-IVTTTDCYRKTRIFIETVLPKM--GITA 277 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all------~~GD~-VIv~~~~y~~~~~~~~~~l~~~--Gi~v 277 (541)
.+..++++++|++++|.+ +++++++|++++.+++.+++ ++||+ |+++.+.|+++...+....... |.++
T Consensus 70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~ 149 (416)
T 1qz9_A 70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL 149 (416)
T ss_dssp GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceE
Confidence 366789999999999974 56677777799988888776 89996 5566668877655443333333 8899
Q ss_pred EEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcEEEECCc
Q 009172 278 TVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADLVLHSAT 356 (541)
Q Consensus 278 ~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDivv~S~s 356 (541)
++++. +++|++++++ ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. ......++|+++.|+|
T Consensus 150 ~~v~~--~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~ 226 (416)
T 1qz9_A 150 RLVDS--PEELPQAIDQ-DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTY 226 (416)
T ss_dssp EEESS--GGGHHHHCST-TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSS
T ss_pred EEeCc--HHHHHHHhCC-CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCc
Confidence 88887 8889999987 599999999999999999999999999999999999999875432 2223457899999999
Q ss_pred cccC-CCCCceE-EEEEeChHHHHHHHHHh-----------------------hhcCCCccHHHHHHHHHhHHH-----H
Q 009172 357 KFIG-GHNDVLA-GSISGSGKLVTQIRNLH-----------------------HVLGGALNPNAAYLIIRGMKT-----L 406 (541)
Q Consensus 357 K~lg-g~g~v~g-G~vv~~~~li~~l~~~~-----------------------~~~g~~~s~~~a~l~l~~l~t-----l 406 (541)
|+++ |.+ + |+++.++++++.++... ....++.+......+...++. +
T Consensus 227 K~l~~g~~---~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~ 303 (416)
T 1qz9_A 227 KYLNGGPG---SQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDM 303 (416)
T ss_dssp STTCCCTT---CCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCH
T ss_pred ccCCCCCC---CeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCH
Confidence 9975 443 4 88888888766554311 111223444443333334433 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-C--CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009172 407 HLRVQQQNSTALRMAEILEAH-P--KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA 482 (541)
Q Consensus 407 ~~r~~~~~~na~~la~~L~~~-p--~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ia 482 (541)
....++..++++++.+.|++. | ++. +..|. .+ ...+++++|.+++ ...+.+.|...++.
T Consensus 304 ~~~~~~~~~~~~~l~~~L~~~~~~~g~~-~~~~~---~~---------~~~~~~~~~~~~~----~~~l~~~l~~~gi~ 365 (416)
T 1qz9_A 304 ASLRRKSLALTDLFIELVEQRCAAHELT-LVTPR---EH---------AKRGSHVSFEHPE----GYAVIQALIDRGVI 365 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCE-ECSCS---SG---------GGBCSEEEEECTT----HHHHHHHHHTTTEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCeE-EeCCC---CH---------HHcCCEEEEecCC----HHHHHHHHHhCCcE
Confidence 345566677888888888774 4 443 22221 00 0135789999863 34555555544544
No 133
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.91 E-value=1.2e-22 Score=208.33 Aligned_cols=265 Identities=13% Similarity=0.150 Sum_probs=186.5
Q ss_pred CCCchhHHHHHHHHHHHhC---C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 206 RYGNPTTVVVEEKMSALEG---A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g---~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
+|+++...+++++||++++ . ++.+++++|++++.+++.++ ||+|+++ |+|++.... ++..|.++..+
T Consensus 52 ~y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~---gd~Vl~~-p~y~~~~~~----~~~~g~~~~~v 123 (335)
T 1uu1_A 52 IYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF---DRSVFFP-PTYSCYRIF----AKAVGAKFLEV 123 (335)
T ss_dssp SCCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS---SEEEECS-SSCHHHHHH----HHHHTCEEEEC
T ss_pred cCCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh---CCcEEEC-CCcHHHHHH----HHHcCCeEEEe
Confidence 3444557899999999998 4 35677777789999999887 8999999 999886543 34458888877
Q ss_pred CCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc---cc-ccccCCcEE
Q 009172 281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QK-ALSLGADLV 351 (541)
Q Consensus 281 d~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~---~~-~l~~gaDiv 351 (541)
+.+ |++++ + ++++|++++|+||||.++|.+++.++++..| ++|+|++|..... .. ....+.+++
T Consensus 124 ~~~~~~~~d~~~l-----~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~ 196 (335)
T 1uu1_A 124 PLTKDLRIPEVNV-----G-EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAV 196 (335)
T ss_dssp CCCTTSCCCCCCC-----C-TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEE
T ss_pred ccCCCCCCCHHHc-----C-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEE
Confidence 643 33333 3 4899999999999999999999999999889 9999999864211 11 122457899
Q ss_pred EECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHhCC
Q 009172 352 LHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK---TLHLRVQQQNSTALRMAEILEAHP 428 (541)
Q Consensus 352 v~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~---tl~~r~~~~~~na~~la~~L~~~p 428 (541)
+.|+||.+|.+| ...|++++++++++.++.....+ ..++...+.+...++ .+..+.++..++++++.+.|+++
T Consensus 197 ~~s~sK~~g~~G-~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~- 272 (335)
T 1uu1_A 197 IRTFSKAFSLAA-QRVGYVVASEKFIDAYNRVRLPF--NVSYVSQMFAKVALDHREIFEERTKFIVEERERMKSALREM- 272 (335)
T ss_dssp EEESTTTTTCGG-GCCEEEEECHHHHHHHHHHSCTT--CSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EecchhhcCCcc-cCeEEEEeCHHHHHHHHHhcCCC--CcCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence 999999998555 34689999999988887765433 445555555544544 34455666677888888888875
Q ss_pred CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHH
Q 009172 429 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSER 508 (541)
Q Consensus 429 ~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~ 508 (541)
++. + +|. .|+++++.+++ .....+.+.|...++.+..
T Consensus 273 g~~-~-~~~----------------~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~----------------------- 309 (335)
T 1uu1_A 273 GYR-I-TDS----------------RGNFVFVFMEK--EEKERLLEHLRTKNVAVRS----------------------- 309 (335)
T ss_dssp TCC-B-CCC----------------CSSEEEEECCT--HHHHHHHHHHHHHTEEEEE-----------------------
T ss_pred CcE-E-cCC----------------CCeEEEEECCC--CCHHHHHHHHHHCCEEEEE-----------------------
Confidence 332 2 221 35688998864 3445566666544544432
Q ss_pred HhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 509 LKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 509 ~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++.+|||++.+ +.++.+.++|++
T Consensus 310 -----~~~~iRis~~~~---~~i~~~~~~l~~ 333 (335)
T 1uu1_A 310 -----FREGVRITIGKR---EENDMILRELEV 333 (335)
T ss_dssp -----ETTEEEEECCCH---HHHHHHHHHHHC
T ss_pred -----CCCeEEEEeCCH---HHHHHHHHHHHh
Confidence 146899999852 335666666654
No 134
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.91 E-value=7.8e-23 Score=214.01 Aligned_cols=302 Identities=15% Similarity=0.134 Sum_probs=207.0
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-------ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-------l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
..+...++|++||+++|.++.++++||++|+.+++.++ +++||+|+++.++|+++...+ ...|.+++++
T Consensus 32 ~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~~~~~~~----~~~g~~~~~~ 107 (390)
T 3b8x_A 32 MGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKGDEIIVPAVSWSTTYYPL----QQYGLRVKFV 107 (390)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTTCEEEEESSSCHHHHHHH----HHTTCEEEEE
T ss_pred CChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCcCEEEECCCCcHHHHHHH----HHcCCEEEEE
Confidence 57889999999999999999999999999999999998 889999999999999976544 3468888887
Q ss_pred CCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCC--cEEE
Q 009172 281 DPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA--DLVL 352 (541)
Q Consensus 281 d~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~ga--Divv 352 (541)
+.+ |+++|++++++ ++++|+++ |++|.+.|+++|.++|+++|+++|+|++++.+...+....|. |+.+
T Consensus 108 ~~~~~~~~~d~~~l~~~i~~-~~~~v~~~---~~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~~~~~~~ 183 (390)
T 3b8x_A 108 DIDINTLNIDIESLKEAVTD-STKAILTV---NLLGNPNNFDEINKIIGGRDIILLEDNCESMGATFNNKCAGTFGLMGT 183 (390)
T ss_dssp CBCTTTCSBCHHHHHHHCCT-TEEEEEEE---CGGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEETTEETTSSSSEEE
T ss_pred ecCccccCcCHHHHHHHhCc-CCeEEEEE---CCccChhhHHHHHHHHHHcCCEEEEECcCcccCEECCcccccccceEE
Confidence 643 79999999987 59999996 466778999999999999999999999998655444445565 5555
Q ss_pred ECC--ccccCCCCCceEEEEEeCh-HHHHHHHHHhhh-----------------------------cCC--CccHHHHHH
Q 009172 353 HSA--TKFIGGHNDVLAGSISGSG-KLVTQIRNLHHV-----------------------------LGG--ALNPNAAYL 398 (541)
Q Consensus 353 ~S~--sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~-----------------------------~g~--~~s~~~a~l 398 (541)
.|+ +|.++++ .||++++++ ++.++++..... .|. .+++..+++
T Consensus 184 ~s~~~~k~~~~g---~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~ 260 (390)
T 3b8x_A 184 FSSFYSNHIATM---EGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAI 260 (390)
T ss_dssp EECCTTSSSCSS---SCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHH
T ss_pred EEccCCCCCccC---CceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHH
Confidence 442 3444322 368888876 676666653321 111 156777777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-HHHHHHHHHHcC
Q 009172 399 IIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-LTATIKFIDALK 477 (541)
Q Consensus 399 ~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-~~~~~~~l~~L~ 477 (541)
++..++.++...++..++++++.+.|+++|++. +..+. . .....++++.++.. ......+.+.|.
T Consensus 261 ~l~~l~~l~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~--~-----------~~~~~~~~i~~~~~~~~~~~~l~~~L~ 326 (390)
T 3b8x_A 261 GIEQLKKLPRFISVRRKNAEYFLDKFKDHPYLD-VQQET--G-----------ESSWFGFSFIIKKDSGVIRKQLVENLN 326 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEE-ECCCC--S-----------BCCCCEEEEEECTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-cCCCC--C-----------CcccEEEEEEecCcCcccHHHHHHHHH
Confidence 777788888888888899999999998877653 22111 0 01123466667520 012334555554
Q ss_pred CCceeecCCCcccceec-Cccc--cc---ccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHH
Q 009172 478 IPYIAPSFGGCESIVDQ-PAIM--SY---WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQAL 538 (541)
Q Consensus 478 ~~~iavS~G~~~sl~~~-pa~~--~~---~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL 538 (541)
..++.++.+-..+...+ |... .| ..++..+. +..+.|||+++...+++.++.+.++|
T Consensus 327 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 327 SAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEY----LDKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp HTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHH----HHHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred HCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHH----HhcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 45666664211111112 2211 11 11221111 12468999999998888888887765
No 135
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.91 E-value=1.2e-22 Score=213.95 Aligned_cols=275 Identities=12% Similarity=0.072 Sum_probs=180.9
Q ss_pred hHHHHHHHHHHHh----CCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-
Q 009172 211 TTVVVEEKMSALE----GAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~- 282 (541)
...++++++++++ +.+ +++++++|++|+.+++.+++++||+|+++.|+|.++... +...|.++..++.
T Consensus 80 g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 155 (413)
T 3t18_A 80 GEKDYRKIVIDTLFGPYKPEGYISAIATPGGTGAIRSAIFSYLDEGDPLICHDYYWAPYRKI----CEEFGRNFKTFEFF 155 (413)
T ss_dssp CCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHCCSSCEEEEESSCCTHHHHH----HHHHTCEEEEECCB
T ss_pred CCHHHHHHHHHHHhcccCccccCcEEEcCccHHHHHHHHHHhcCCCCEEEECCCCcccHHHH----HHHhCCeEEEeecc
Confidence 3445666666543 444 567777777999999999999999999999999886643 3445888887763
Q ss_pred -----CCHHHHHHhccCC---Cee-EEEEeCC-CCCCCcccCHHHHH---HHHH------hCCCEEEEEcCCCCCCcc--
Q 009172 283 -----ADMEGLEAALNNN---NVS-LFFTESP-TNPFLRCVDVKLVS---DLCH------KKGAIVCIDGTFATPLNQ-- 341 (541)
Q Consensus 283 -----~dle~Le~ai~~~---~tk-lV~lesp-~NPtG~v~di~~Ia---~la~------~~gillvvDea~a~~~~~-- 341 (541)
.|+++|++++++. +++ +|++++| +||||.+.|.+++. ++|+ ++|++||+||+|......
T Consensus 156 ~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~ 235 (413)
T 3t18_A 156 TDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGD 235 (413)
T ss_dssp CTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSS
T ss_pred CCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChh
Confidence 2789999988741 366 8999999 99999999976555 5555 899999999997543211
Q ss_pred --cc-c----ccCCc---EEEECCccccCCCCCceEEEEEe---ChHHHHHHHHHhhhc----CCCccHHHHHHHHHhHH
Q 009172 342 --KA-L----SLGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVL----GGALNPNAAYLIIRGMK 404 (541)
Q Consensus 342 --~~-l----~~gaD---ivv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~~~~~~~----g~~~s~~~a~l~l~~l~ 404 (541)
.+ . ..+.+ +++.|+||.++.+| ...|++++ ++++++.+....... ....+.....++...++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G-~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 314 (413)
T 3t18_A 236 QQRKFFEKFSNLPRNLFVVVAFSMSKSHTAYG-LRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELER 314 (413)
T ss_dssp TTTGGGGGGTTCCTTEEEEEEEEHHHHTTCGG-GCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTS
T ss_pred hHHHHHHHHhhcCCCeeEEEEEecCccCCCcC-cCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhc
Confidence 01 1 11223 78899999998665 34688887 889988887654321 12344554444444332
Q ss_pred H---------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009172 405 T---------LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA 475 (541)
Q Consensus 405 t---------l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~ 475 (541)
. +....++..++.+.+.+.|+++ ++. +..| ..|.++++.+. +. .+|.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g~~-~~~~----------------~~~~~~~~~~~-~~---~~~~~~ 372 (413)
T 3t18_A 315 AENKKIYEQELVDLRNMLKSRADVFVTAAKEN-KLT-MIPY----------------FGGFFTFIPTD-KA---FDIVKD 372 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCC-CBCC----------------CSSSCEEEECS-CH---HHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC-ccCC----------------CceEEEEeCCC-CH---HHHHHH
Confidence 2 2223344556777778888775 321 1111 12335666653 22 233444
Q ss_pred cCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 476 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 476 L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
|...++.+..| ++.||||++..+.+++++.|.++|++
T Consensus 373 l~~~gv~v~~g----------------------------~~~iRis~~~~~~~~~l~~l~~~l~~ 409 (413)
T 3t18_A 373 LEKENIFTIPS----------------------------AKGIRVAICGVGEEKIPKLVQRLAFY 409 (413)
T ss_dssp HHHTTEECEEC----------------------------SSEEEECTTTSCGGGHHHHHHHHHHH
T ss_pred HHhCCEEEecC----------------------------CCceEEEEeeCCHHHHHHHHHHHHHH
Confidence 44445555433 46899999976666668989888864
No 136
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.91 E-value=7.4e-23 Score=216.91 Aligned_cols=292 Identities=12% Similarity=0.092 Sum_probs=191.3
Q ss_pred CCCchh-HHHHHHHHHHHhCCC-cEEEeCCH-HHHH--HHHHHHhccC------------CCEEEEcCCCCcchHHHHHh
Q 009172 206 RYGNPT-TVVVEEKMSALEGAE-STVIMASG-MSAS--TVMLLALVPA------------GGHIVTTTDCYRKTRIFIET 268 (541)
Q Consensus 206 R~~~p~-~~~Le~~LA~l~g~~-~~i~~sSG-~~Ai--~~al~all~~------------GD~VIv~~~~y~~~~~~~~~ 268 (541)
+|+.+. ..+|+++||++++.+ +.|++++| ++++ .+++..+.++ ||+|+++.|+|.+....+
T Consensus 71 ~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~-- 148 (422)
T 3d6k_A 71 NYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTIT-- 148 (422)
T ss_dssp SSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHH--
T ss_pred CCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHH--
Confidence 455544 789999999999874 44555554 5776 5666777666 348999999999876443
Q ss_pred hcccCCcEEEEeCC----CCHHHHHHhccCCCeeEEE-EeCCCCCCCcccCHH---HHHHHHH-hCCCEEEEEcCCCC-C
Q 009172 269 VLPKMGITATVIDP----ADMEGLEAALNNNNVSLFF-TESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFAT-P 338 (541)
Q Consensus 269 ~l~~~Gi~v~~vd~----~dle~Le~ai~~~~tklV~-lesp~NPtG~v~di~---~Ia~la~-~~gillvvDea~a~-~ 338 (541)
+..|.++..++. .|+++|++++++.++++|+ +++|+||||.+++.+ +|.++|+ ++|+++|+|++|.. .
T Consensus 149 --~~~g~~~~~v~~~~~g~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~ 226 (422)
T 3d6k_A 149 --EHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHT 226 (422)
T ss_dssp --HHHTCEEEEEEEETTEECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCB
T ss_pred --HHcCCEEEecCCCCCCCCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccc
Confidence 345777776653 4799999999754589988 689999999999976 7777787 89999999999873 1
Q ss_pred C-c----cccc--------ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH
Q 009172 339 L-N----QKAL--------SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT 405 (541)
Q Consensus 339 ~-~----~~~l--------~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t 405 (541)
+ . ..++ ..+.++++.|+||. +++| ...|++++++++++.+...........++.....+...++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G-lriG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~ 304 (422)
T 3d6k_A 227 LSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAG-SGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGD 304 (422)
T ss_dssp SSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTT-SSCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHCS
T ss_pred cCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcc-cceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhC
Confidence 1 1 1112 23568999999998 4444 35799999999999888776655555566655554444432
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHhC-CCc--eEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009172 406 -------LHLRVQQQNSTALRMAEILEAH-PKV--KRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA 475 (541)
Q Consensus 406 -------l~~r~~~~~~na~~la~~L~~~-p~v--~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~ 475 (541)
+....+...++.+.+.+.|.++ +.. ..+..|. .|.++++++++. ....+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~----------------~g~~~~~~~~~~--~~~~~~~~ 366 (422)
T 3d6k_A 305 VAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPT----------------GGYFISVDVVPG--TASRVVEL 366 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCCS----------------BSSCEEEEESTT--CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCCC----------------cceEEEEECCCC--CHHHHHHH
Confidence 2222233345566666666542 211 1222231 467899999753 23345555
Q ss_pred cCCCceeecCCCc-ccceecCcccccccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHh
Q 009172 476 LKIPYIAPSFGGC-ESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALH 539 (541)
Q Consensus 476 L~~~~iavS~G~~-~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---Ed~edli~dL~~AL~ 539 (541)
+...++.+..|+. +... + .-.+++||||++. |+.++.++.|.++++
T Consensus 367 l~~~gV~v~~~g~~f~~~--~----------------~~~~~~iRis~~~~~~e~i~~~~~~l~~~l~ 416 (422)
T 3d6k_A 367 AKEAGIALTGAGSSFPLH--N----------------DPNNENIRLAPSLPPVAELEVAMDGFATCVL 416 (422)
T ss_dssp HHHTTEECCCTTTTSGGG--C----------------CTTSCEEEECCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCeEEEcCccccCCC--C----------------CCCCCeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 5556777777432 2100 0 0125789999995 345556666666654
No 137
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.90 E-value=5e-23 Score=215.45 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=188.9
Q ss_pred CCCchhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHhhccc---------
Q 009172 206 RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLPK--------- 272 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g--~~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~~~l~~--------- 272 (541)
.|..+..++++++|++++| .+++++++||++|+.+++.++. .+||+||+.++.|++...........
T Consensus 83 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p 162 (395)
T 1vef_A 83 TLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLP 162 (395)
T ss_dssp TSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCS
T ss_pred ccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCC
Confidence 3578899999999999995 3567888889999999998764 67999999999997644322111111
Q ss_pred CCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCc------cc
Q 009172 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN------QK 342 (541)
Q Consensus 273 ~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~------~~ 342 (541)
...++..++..|+++|++++++ ++++|++++++||||.+.| +++|.++|++||++||+|++|+.... .+
T Consensus 163 ~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~ 241 (395)
T 1vef_A 163 LVEPVEFIPYNDVEALKRAVDE-ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFE 241 (395)
T ss_dssp CSSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHH
T ss_pred CCCCeeEeCCCcHHHHHHHhcc-CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhh
Confidence 1123555666799999999986 5999999888899999988 99999999999999999999874211 12
Q ss_pred ccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHH
Q 009172 343 ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRM 420 (541)
Q Consensus 343 ~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~l 420 (541)
....+.|++ |+||++++ | ...|++++++++++.++..........++..++.+...++.+.. ..++..++++++
T Consensus 242 ~~~~~~d~~--s~sK~~~~-g-~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l 317 (395)
T 1vef_A 242 HFGIVPDIL--TLAKALGG-G-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGVAAIRYLERTRLWERAAELGPWF 317 (395)
T ss_dssp HHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred hcCCCCCEE--EEcccccC-C-CceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 233457876 78999997 4 34677888877776654421122233566666666666665432 345556777777
Q ss_pred HHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcC-CCceeecCCCcccceecCcccc
Q 009172 421 AEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVDQPAIMS 499 (541)
Q Consensus 421 a~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~~pa~~~ 499 (541)
.+.|++.+. +.+ ....+.|++++|.++++ ...+.+.|. ..++.+..+
T Consensus 318 ~~~l~~~~~------~~~----------~~~~~~g~~~~~~~~~~---~~~l~~~l~~~~gi~v~~~------------- 365 (395)
T 1vef_A 318 MEKLRAIPS------PKI----------REVRGMGLMVGLELKEK---AAPYIARLEKEHRVLALQA------------- 365 (395)
T ss_dssp HHHHHTSCC------TTE----------EEEEEETTEEEEEESSC---SHHHHHHHHHHHCEECEES-------------
T ss_pred HHHHHHhhc------Cce----------EEEEEEEEEEEEEEcCh---HHHHHHHHHHHCCeEEecC-------------
Confidence 888876432 100 00123567999999753 233444443 335444321
Q ss_pred cccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 500 YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 500 ~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.++.|||+++...+++.++.+.++|.
T Consensus 366 --------------~~~~iRi~~~~~~~~~~i~~~~~~l~ 391 (395)
T 1vef_A 366 --------------GPTVIRFLPPLVIEKEDLERVVEAVR 391 (395)
T ss_dssp --------------STTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred --------------CCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24789999886555554555555544
No 138
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.90 E-value=5.4e-23 Score=219.22 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE-------
Q 009172 210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT------- 276 (541)
Q Consensus 210 p~~~~Le~~LA~l~----g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~------- 276 (541)
+...+|+++|++++ +. +..+++++|++++.++ .+++++||+|+++.|+|++....+. ..|.+
T Consensus 111 ~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~----~~g~~g~~~~~~ 185 (449)
T 3qgu_A 111 QGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSV----MMGMTGDHNGTG 185 (449)
T ss_dssp TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHH----HHTCSCCBCSSS
T ss_pred CCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHH----HcCCcccccccc
Confidence 45789999999998 43 4566666677999888 8889999999999999998765443 23444
Q ss_pred ---EEEeCCCCHHHHHHhccC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----ccc
Q 009172 277 ---ATVIDPADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KAL 344 (541)
Q Consensus 277 ---v~~vd~~dle~Le~ai~~-~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~l 344 (541)
+..++.++.+.+...+.. .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~ 265 (449)
T 3qgu_A 186 FDGIEYMVCNPDNHFFPDLSKAKRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIY 265 (449)
T ss_dssp BTTEEEEECCGGGTTCCCGGGCCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGG
T ss_pred cceeEEEecccccCCcCChhHcCCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHh
Confidence 555554322122111111 25899999999999999987 678888899999999999998753221 111
Q ss_pred ----ccCCcEEEECCccccCCCCCceEEEEEeChHHHH--------HHHHHhhhcCCCccHHHHHHHHHhH-----HHHH
Q 009172 345 ----SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT--------QIRNLHHVLGGALNPNAAYLIIRGM-----KTLH 407 (541)
Q Consensus 345 ----~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~--------~l~~~~~~~g~~~s~~~a~l~l~~l-----~tl~ 407 (541)
..+.++++.|+||.+|..| ...|++++++++++ .+...........++.....+...+ +.+.
T Consensus 266 ~~~~~~~~~i~~~s~sK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~ 344 (449)
T 3qgu_A 266 EIPGADEVAIETCSFSKYAGFTG-VRLGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMN 344 (449)
T ss_dssp GSTTGGGTEEEEEECSGGGTCTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHH
T ss_pred hccCCCCcEEEEecchhhcCCcc-ceeEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHH
Confidence 1356799999999998555 34688988887654 3433333323344555544443333 3345
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC-CceeecCC
Q 009172 408 LRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKI-PYIAPSFG 486 (541)
Q Consensus 408 ~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~-~~iavS~G 486 (541)
...++..++++.+.+.|+++ ++. +..| ..|.++++.+++ ....++.+.|.. .++.+..|
T Consensus 345 ~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~--~~~~~~~~~l~~~~gI~v~pg 404 (449)
T 3qgu_A 345 AMIKFYKENAQILKTTFTEM-GFS-VYGG----------------DDAPYIWVGFPG--KPSWDVFAEILERCNIVTTPG 404 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-TCC-EEES----------------SSSSEEEEECTT--SCHHHHHHHHHHHHCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCe-eeCC----------------CCeeEEEEECCC--CCHHHHHHHHHHHCCEEEecc
Confidence 55666778888888988876 332 2111 146788999872 122333333322 25666655
Q ss_pred CcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHh
Q 009172 487 GCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALH 539 (541)
Q Consensus 487 ~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~ 539 (541)
..+.. ..++.||||+.. |+.++.++.|.++++
T Consensus 405 ~~f~~---------------------~~~~~iRis~~~~~e~i~~~l~~l~~~~~ 438 (449)
T 3qgu_A 405 SGYGP---------------------AGEGFVRASAFGSRENILEAVRRFKEAYG 438 (449)
T ss_dssp GGGCG---------------------GGTTEEEEECCSCHHHHHHHHHHHHHHHC
T ss_pred hHhCC---------------------CCCCeEEEEecCCHHHHHHHHHHHHHHHH
Confidence 43211 125799999865 334555555555554
No 139
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.90 E-value=4.7e-23 Score=221.18 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=189.5
Q ss_pred hhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCE---EEEcCCCCcchHHHHHhhcccCCcEE-----EE
Q 009172 210 PTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGH---IVTTTDCYRKTRIFIETVLPKMGITA-----TV 279 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~---VIv~~~~y~~~~~~~~~~l~~~Gi~v-----~~ 279 (541)
+..+++++++++++|++ ++++++++++++.+++.+++++||. |+++.++|++....+...++..|+++ ..
T Consensus 111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~ 190 (465)
T 3e9k_A 111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMI 190 (465)
T ss_dssp GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEE
T ss_pred HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEE
Confidence 45678999999999974 5666677779999999999877655 99999999997765655566667653 23
Q ss_pred eCC-----CCHHHHHHhcc---CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccccccCCcE
Q 009172 280 IDP-----ADMEGLEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKALSLGADL 350 (541)
Q Consensus 280 vd~-----~dle~Le~ai~---~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l~~gaDi 350 (541)
.+. .|+++|+++|+ + ++++|++++|+||||.+.|+++|.++|+++|+++|+|++++.+.. .+..+.++|+
T Consensus 191 ~~~~~~~~~d~~~l~~~i~~~~~-~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~ 269 (465)
T 3e9k_A 191 KPREGEETLRIEDILEVIEKEGD-SIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDF 269 (465)
T ss_dssp CCCTTCSSCCHHHHHHHHHHHGG-GEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCE
T ss_pred ecCCCCCccCHHHHHHHHHhcCC-CeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCE
Confidence 322 27999999996 4 599999999999999999999999999999999999999887543 3344578999
Q ss_pred EEECCccccC-CCCCceEEEEEeChHHHHHHHHHhh-------------------------hcCCCccHHHHHHHHHhHH
Q 009172 351 VLHSATKFIG-GHNDVLAGSISGSGKLVTQIRNLHH-------------------------VLGGALNPNAAYLIIRGMK 404 (541)
Q Consensus 351 vv~S~sK~lg-g~g~v~gG~vv~~~~li~~l~~~~~-------------------------~~g~~~s~~~a~l~l~~l~ 404 (541)
++.|++|+++ |++. .|+++.++++++.+..... ...++.+......+..+++
T Consensus 270 ~~~s~~K~l~~gp~~--~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~ 347 (465)
T 3e9k_A 270 ACWCSYKYLNAGAGG--IAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLE 347 (465)
T ss_dssp EEECSSSTTCCCTTC--CCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHH
T ss_pred EEECcccccccCCCc--eEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHH
Confidence 9999999994 4441 3667777776554331100 0011344444444444444
Q ss_pred HH-----HHHHHHHHHHHHHHHHHHHhC----------CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHH
Q 009172 405 TL-----HLRVQQQNSTALRMAEILEAH----------PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTAT 469 (541)
Q Consensus 405 tl-----~~r~~~~~~na~~la~~L~~~----------p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~ 469 (541)
.+ +...++..++++++.+.|+++ +++. +..|. . ..+.|++++|.++.+ .
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~-~~~p~---~---------~~~~g~~~~~~~~~~---~ 411 (465)
T 3e9k_A 348 IFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVN-IITPS---H---------VEERGCQLTITFSVP---N 411 (465)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEE-ECSCS---S---------GGGBCSCEEEEECCT---T
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeE-EeCCC---C---------HhhcccEEEEEecCC---H
Confidence 33 334455556677777777764 3332 22221 0 122578999998732 2
Q ss_pred HHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEe-cCCCHHHHHHHHHHHHh
Q 009172 470 IKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF-GVEDFEDLKADVLQALH 539 (541)
Q Consensus 470 ~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv-G~Ed~edli~dL~~AL~ 539 (541)
..+.+.|...++.+.++ .++.||||+ +..++++.++.+.++|+
T Consensus 412 ~~l~~~L~~~Gi~v~~~---------------------------~~~~iRis~~~~~~t~edi~~~~~~l~ 455 (465)
T 3e9k_A 412 KDVFQELEKRGVVCDKR---------------------------NPNGIRVAPVPLYNSFHDVYKFTNLLT 455 (465)
T ss_dssp CCHHHHHHTTTEECEEE---------------------------TTTEEEEBCCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEecC---------------------------CCCEEEEeCcccCCCHHHHHHHHHHHH
Confidence 23444454445544311 247899998 56554444444444443
No 140
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.90 E-value=2.8e-22 Score=211.58 Aligned_cols=274 Identities=14% Similarity=0.094 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHh----CCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC--
Q 009172 212 TVVVEEKMSALE----GAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (541)
Q Consensus 212 ~~~Le~~LA~l~----g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~-- 282 (541)
..+|++++++++ +.+ +++++++|++|+.+++.+++++||+|+++.|+|.++.. .+...|.++..++.
T Consensus 82 ~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l~~~gd~Vl~~~p~~~~~~~----~~~~~g~~~~~v~~~~ 157 (418)
T 3rq1_A 82 IPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNYTEPGDEVLTADWYWGAYRV----ICSDTGRTLVTYSLFD 157 (418)
T ss_dssp CHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHHSCTTCEEEEESSCCTHHHH----HHHHTTCEEEEECSBC
T ss_pred hHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHhcCCCCEEEECCCCchhHHH----HHHHcCCEEEEEeeeC
Confidence 456777777654 455 56677777799999999999999999999999988654 34556888888863
Q ss_pred ----CCHHHHHHhccCC---Cee-EEEEeCC-CCCCCcccCHHHHH---HHHH------hCCCEEEEEcCCCCCCccc--
Q 009172 283 ----ADMEGLEAALNNN---NVS-LFFTESP-TNPFLRCVDVKLVS---DLCH------KKGAIVCIDGTFATPLNQK-- 342 (541)
Q Consensus 283 ----~dle~Le~ai~~~---~tk-lV~lesp-~NPtG~v~di~~Ia---~la~------~~gillvvDea~a~~~~~~-- 342 (541)
.|+++|++++++. +++ +|++++| +||||.++|.+++. ++|+ ++|+++|+|++|.......
T Consensus 158 ~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~ 237 (418)
T 3rq1_A 158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDE 237 (418)
T ss_dssp TTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHH
T ss_pred CCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHH
Confidence 2789999988741 255 8999999 99999999966555 5555 8999999999986433211
Q ss_pred --c-c----ccCCc---EEEECCccccCCCCCceEEEEEe---ChHHHHHHHHHhhhc----CCCccHHHHHHHHHhHHH
Q 009172 343 --A-L----SLGAD---LVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNLHHVL----GGALNPNAAYLIIRGMKT 405 (541)
Q Consensus 343 --~-l----~~gaD---ivv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~~~~~~~----g~~~s~~~a~l~l~~l~t 405 (541)
+ . ....+ +++.|+||.++.+|. ..|++++ ++++++.+....... ....+...+.++...++.
T Consensus 238 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~ 316 (418)
T 3rq1_A 238 VRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVAD 316 (418)
T ss_dssp HHGGGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCC
Confidence 1 1 11223 788999999986663 4688887 888988887654321 123444444444333322
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHH
Q 009172 406 ----------LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDA 475 (541)
Q Consensus 406 ----------l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~ 475 (541)
+....++..++++.+.+.|+++ ++. +..| ..|.++++.++ +. .+|.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~-~~---~~~~~~ 374 (418)
T 3rq1_A 317 PAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLP-MLPY----------------RGGFFITIPTD-SA---NAICEE 374 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCC-CCCC----------------CSSSEEEEECT-TH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC-CCCC----------------CceEEEEcCCC-CH---HHHHHH
Confidence 1122344456667777777764 221 1111 13445666664 22 334444
Q ss_pred cCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC---CCHHHHHHHHHHHHhh
Q 009172 476 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---EDFEDLKADVLQALHA 540 (541)
Q Consensus 476 L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---Ed~edli~dL~~AL~~ 540 (541)
|...++.+..| .+.||||++. ++.++.++.|.+++++
T Consensus 375 l~~~gi~v~~g----------------------------~~~iRis~~~~~~~~i~~~~~~l~~~l~~ 414 (418)
T 3rq1_A 375 LKKEHIYVIAL----------------------------ANGIRIAACGIPKCQMTGLAEKIYNAMKS 414 (418)
T ss_dssp HHHTTEECEEC----------------------------SSEEEEEGGGSCHHHHTTHHHHHHHHHHH
T ss_pred HHhCCEEEecC----------------------------CCCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 44445555432 3579999883 3455567777777764
No 141
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.90 E-value=6.8e-22 Score=214.81 Aligned_cols=216 Identities=12% Similarity=0.140 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHhC-C----CcEEEeCCHHHHHHHHHHHhccCCC----EEEEcCCCCcchHHHHHhhcccCCcEEEEeC
Q 009172 211 TTVVVEEKMSALEG-A----ESTVIMASGMSASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVID 281 (541)
Q Consensus 211 ~~~~Le~~LA~l~g-~----~~~i~~sSG~~Ai~~al~all~~GD----~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd 281 (541)
..+++.+.+.+..| . +++++++++++++.+++.+++++|| +|+++.|.|..+... +...|.++..++
T Consensus 134 lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd~~~d~Vlv~~p~y~~~~~~----~~~~g~~~v~~~ 209 (498)
T 3ihj_A 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAV----ISELDAIQVNYY 209 (498)
T ss_dssp HHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCGGGSEEEEEEESCCTHHHHH----HHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCCCCCEEEEeCCCchhHHHH----HHHcCCEEEEee
Confidence 33444444444443 2 4677777778999999999999875 999999999976543 444577777765
Q ss_pred CC-------CHHHHHHhccCC----CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCccc-----
Q 009172 282 PA-------DMEGLEAALNNN----NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQK----- 342 (541)
Q Consensus 282 ~~-------dle~Le~ai~~~----~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~----- 342 (541)
.+ |+++|++++++. ++++|++++|+||||.+++ +++|+++|+++|++||+|++|.......
T Consensus 210 ~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~ 289 (498)
T 3ihj_A 210 LDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFH 289 (498)
T ss_dssp CBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCC
T ss_pred ccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcC
Confidence 43 899999998752 3899999999999999987 5678999999999999999987654321
Q ss_pred cc-----ccC-------CcEEEECCccccCCCCCceEEEEE---eChHHHHHHHHHhhhcCCCccHHHHHHHHHh-----
Q 009172 343 AL-----SLG-------ADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRNLHHVLGGALNPNAAYLIIRG----- 402 (541)
Q Consensus 343 ~l-----~~g-------aDivv~S~sK~lgg~g~v~gG~vv---~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~----- 402 (541)
++ +.+ ..++++|+||.+.|..+..+||++ .++++++.+....... ...+.....++...
T Consensus 290 s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~q~a~~~~l~~~~ 368 (498)
T 3ihj_A 290 SFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLLSVR-LCPPVSGQAAMDIVVNPPV 368 (498)
T ss_dssp CHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHHHHS-CCCCHHHHHHHHHHTCCCC
T ss_pred CHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHhcCCc
Confidence 11 011 137889999999542224578887 6888888887765533 33333333332222
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009172 403 ---------MKTLHLRVQQQNSTALRMAEILEAHPKVK 431 (541)
Q Consensus 403 ---------l~tl~~r~~~~~~na~~la~~L~~~p~v~ 431 (541)
++.+....++..++++.+.+.|+++|++.
T Consensus 369 ~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~ 406 (498)
T 3ihj_A 369 AGEESFEQFSREKESVLGNLAKKAKLTEDLFNQVPGIH 406 (498)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 23334455667788899999999877653
No 142
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.90 E-value=2.5e-22 Score=213.96 Aligned_cols=310 Identities=14% Similarity=0.127 Sum_probs=205.9
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh---------ccCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL---------VPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al---------l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
+..+...++|++||+++|.++.++++||++|+.+++.++ +++||+|+++.++|+++...+ ...|+++
T Consensus 59 ~~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~al~~l~~~~~~~~~~~~gd~Vi~~~~~~~~~~~~~----~~~g~~~ 134 (437)
T 3bb8_A 59 TTGRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPT----IQNGLIP 134 (437)
T ss_dssp BSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTCGGGGGGSCCTTCEEEECSSSCHHHHHHH----HHTTCEE
T ss_pred CCChHHHHHHHHHHHHHCCCcEEEeCCHHHHHHHHHHHhhhcccccccCCCcCEEEECCCCcHHHHHHH----HHcCCEE
Confidence 456889999999999999999999999999999999988 889999999999999977544 3468888
Q ss_pred EEeCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccC--Cc
Q 009172 278 TVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLG--AD 349 (541)
Q Consensus 278 ~~vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~g--aD 349 (541)
++++.+ |+++|++++++ +|++|++++ ++|...|+++|.++|+++|+++|+|++++.+...+....| .|
T Consensus 135 ~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~~d 210 (437)
T 3bb8_A 135 VFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAH---TLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGD 210 (437)
T ss_dssp EECCEETTTTEECGGGHHHHCCT-TEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSSSS
T ss_pred EEEeccCccCCcCHHHHHHhcCC-CCeEEEEeC---CCCChhcHHHHHHHHHHcCCEEEEECccccCceECCeecccccC
Confidence 887643 78999999987 599999964 3455589999999999999999999999865433333445 79
Q ss_pred EEEECCccccCCCCCceEEEEEeChHHHHH-HHHHhhh-------------------------------------cC--C
Q 009172 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQ-IRNLHHV-------------------------------------LG--G 389 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv~~~~li~~-l~~~~~~-------------------------------------~g--~ 389 (541)
+++.|++|..+-++. .+|+++++++.+.. ++..... .| .
T Consensus 211 ~~~~s~~~~k~l~~g-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 289 (437)
T 3bb8_A 211 IGTVSFYPAKHITMG-EGGAVFTQSAELKSIIESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNL 289 (437)
T ss_dssp EEEEECSTTSSSCCS-SCEEEEESCHHHHHHHHHHHBTTBCC----------------CCSCCCTTCCGGGCBCSCCCBC
T ss_pred EEEEECcCCcCCCCC-CeEEEEeCCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccCccc
Confidence 998887554443322 47999998665443 3321100 01 1
Q ss_pred CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcc-cEEEEEEcCCHHH
Q 009172 390 ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFG-GVVSFEVDGDLTA 468 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g-~~vsf~l~g~~~~ 468 (541)
.+++..+.+++..++.+..+++++.++++++.+.|++.+++. .+|...... ..+.. .++.|..+.+ ..
T Consensus 290 ~~~~~~aa~~l~~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~ 358 (437)
T 3bb8_A 290 KITDMQAACGLAQLERIEEFVEKRKANFKYLKDALQSCADFI--ELPEATENS--------DPSWFGFPITLKEDSG-VS 358 (437)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTTTE--ECCCCCTTE--------ECCCSSEEEEECGGGS-SC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcc--ccCCCCCCC--------ceeeEEEEEEECCcCc-Cc
Confidence 234666666666777777778888888899999998876653 233211000 00111 1344543311 12
Q ss_pred HHHHHHHcCCCceeecCCCcccceecCcccc-----cccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 469 TIKFIDALKIPYIAPSFGGCESIVDQPAIMS-----YWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 469 ~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~-----~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
...+.+.|...+|.++.+....+..+|.... ...++...+. ..+.|||+++...+++.++.+.++|.+
T Consensus 359 ~~~l~~~L~~~GI~v~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~lrl~~~~~~t~~di~~i~~~l~~ 431 (437)
T 3bb8_A 359 RIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRI----MNQTFWIGIYPGLTHDHLDYVVSKFEE 431 (437)
T ss_dssp HHHHHHHHHHTTBCCBCCTTSSGGGSGGGSSCCCEECSCCHHHHHH----HHHEEEECCSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCceeccCCcccccCchhhccCccccCCCcHHHHH----hcCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3455556655577777654321111222100 0112221111 235799999998887777887777754
No 143
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.90 E-value=3.1e-22 Score=217.85 Aligned_cols=275 Identities=12% Similarity=0.064 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhCCC----cE--EEeCCHHHHHHHHHHHhccCC--------CEEEEcCCCCcchHHHHHhhcccCCcEEE
Q 009172 213 VVVEEKMSALEGAE----ST--VIMASGMSASTVMLLALVPAG--------GHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (541)
Q Consensus 213 ~~Le~~LA~l~g~~----~~--i~~sSG~~Ai~~al~all~~G--------D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~ 278 (541)
+++++++++++|.+ .. +++++|++|+.++++++.++| |+|+++.+.|.++... +...|++++
T Consensus 142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~----~~~~G~~v~ 217 (514)
T 3mad_A 142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKA----AQYFGIKLV 217 (514)
T ss_dssp HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHH----HHHHTCEEE
T ss_pred HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHH----HHHcCCeeE
Confidence 34556678888875 44 888888999999999988776 9999999999986543 344588888
Q ss_pred EeCCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc------------c
Q 009172 279 VIDPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN------------Q 341 (541)
Q Consensus 279 ~vd~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~------------~ 341 (541)
.++.+ |+++|++++++ ++++|++++|+||+|.+.|+++|.++|++||++||+|++|+.+.. .
T Consensus 218 ~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~~~ 296 (514)
T 3mad_A 218 RTPLDADYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPF 296 (514)
T ss_dssp EECBCTTSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCCCC
T ss_pred EeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCCcc
Confidence 88754 89999999987 599999999999999999999999999999999999999875432 2
Q ss_pred cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH-hh-----------hcCCCcc--HHHHHHHHHhH--HH
Q 009172 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HH-----------VLGGALN--PNAAYLIIRGM--KT 405 (541)
Q Consensus 342 ~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~-~~-----------~~g~~~s--~~~a~l~l~~l--~t 405 (541)
+....|+|+++.|++|+++++.+ .|+++.+++........ .. ..|.... ...++.+++.+ ..
T Consensus 297 ~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~~ 374 (514)
T 3mad_A 297 DFRLEGVTSVSADTHKYGYGAKG--TSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374 (514)
T ss_dssp STTSTTCCEEEECTTTTTCCCSS--CEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcEEEECchhccCCCCC--eEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHHH
Confidence 23345889999999999655432 46666665544322110 00 0112111 23444444433 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009172 406 LHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF 485 (541)
Q Consensus 406 l~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~ 485 (541)
+....++..++++++.+.|++.+++..+ .+ ..++++|..++. ...++.+.|...++.++
T Consensus 375 ~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~-----------------~~~~~~~~~~~~--~~~~l~~~L~~~Gi~v~- 433 (514)
T 3mad_A 375 YLDATRRILQAADRLKAGVRAIPSLKIL-GD-----------------PLWVIAVASDEL--NIYQVMEEMAGRGWRLN- 433 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCEES-SC-----------------CSSEEEEECSSS--CHHHHHHHHHTTTCBCE-
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCeEEe-CC-----------------CeEEEEEeCCCC--CHHHHHHHHHhcCCEec-
Confidence 5667788889999999999987766422 21 124788877531 23455566654454331
Q ss_pred CCcccceecCcccccccCCHHHHHhcCCCCCeEEEEec-----CCCHHHHHHHHHHHHhh
Q 009172 486 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG-----VEDFEDLKADVLQALHA 540 (541)
Q Consensus 486 G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG-----~Ed~edli~dL~~AL~~ 540 (541)
| . + .++.+|++++ .|+.+++++.|.+++++
T Consensus 434 g-~-----------------------~-~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~ 468 (514)
T 3mad_A 434 G-L-----------------------H-RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQ 468 (514)
T ss_dssp E-E-----------------------T-TTTEEEEECCGGGGSTTHHHHHHHHHHHHHHH
T ss_pred c-C-----------------------C-CCCeEEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 1 0 0 1357999997 36778888888888753
No 144
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.90 E-value=4.1e-22 Score=216.73 Aligned_cols=284 Identities=14% Similarity=0.039 Sum_probs=193.6
Q ss_pred HHHHHHHHHhCCC-------cEEEeCCHHHHHHHHHHHhccC--------CC-----EEEEcCCCCcchHHHHHhhcccC
Q 009172 214 VVEEKMSALEGAE-------STVIMASGMSASTVMLLALVPA--------GG-----HIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 214 ~Le~~LA~l~g~~-------~~i~~sSG~~Ai~~al~all~~--------GD-----~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
+++++|++++|.+ ..+++++|++|+.+++.++..+ || +|+++.+.|.... ..+...
T Consensus 99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~----~~~~~~ 174 (502)
T 3hbx_A 99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWE----KFARYF 174 (502)
T ss_dssp HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHH----HHHHHT
T ss_pred HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHH----HHHHHc
Confidence 4556788899876 3456889999999998887655 77 9999999998754 344556
Q ss_pred CcEEEEeCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC------CCEEEEEcCCCCCCc-
Q 009172 274 GITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPLN- 340 (541)
Q Consensus 274 Gi~v~~vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~------gillvvDea~a~~~~- 340 (541)
|+++++++.+ |+++|++++++ ++++|++++|+||||.+.|+++|.++|+++ |+++++|++|+.+..
T Consensus 175 G~~~~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p 253 (502)
T 3hbx_A 175 EVELKEVKLSEGYYVMDPQQAVDMVDE-NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAP 253 (502)
T ss_dssp TCEEEEECCBTTBCSCCHHHHHHHCCT-TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHH
T ss_pred CceeEEEecCCCcCcCCHHHHHHHHhh-CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhh
Confidence 8888888632 89999999988 499999999999999999999999999999 999999999874321
Q ss_pred --ccc-----cccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH-hhhcCC----------Cc--cHHHHHHHH
Q 009172 341 --QKA-----LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-HHVLGG----------AL--NPNAAYLII 400 (541)
Q Consensus 341 --~~~-----l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~-~~~~g~----------~~--s~~~a~l~l 400 (541)
... ...++|++..|+||+++++.+. |++++.+++++...... ....+. .. .....|.++
T Consensus 254 ~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~-G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al 332 (502)
T 3hbx_A 254 FLYPELEWDFRLPLVKSINVSGHKYGLVYAGI-GWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQL 332 (502)
T ss_dssp HHCTTCCCSTTSTTEEEEEEETTTTTCCCSSC-EEEEESSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHH
T ss_pred hhCcccccccCCCCceEEEECcccccCCCCCe-EEEEEeCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHH
Confidence 111 1247899999999999766533 33444455443221110 011111 11 233444444
Q ss_pred H--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcC
Q 009172 401 R--GMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALK 477 (541)
Q Consensus 401 ~--~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~ 477 (541)
+ +.+.+..++++..++++++.+.|++++.+..+. +. + ..++++|.++++. .....+.+.|.
T Consensus 333 ~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~-~~----~-----------~~~~v~f~~~~~~~~~~~~l~~~L~ 396 (502)
T 3hbx_A 333 IRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS-KD----E-----------GVPLVAFSLKDSSCHTEFEISDMLR 396 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECS-CS----S-----------SSSEEEEEESSCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-CC----C-----------CceEEEEEecCCCcCCHHHHHHHHH
Confidence 4 345677888899999999999999988765332 21 0 2468999997531 12345666666
Q ss_pred CCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009172 478 IPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH 539 (541)
Q Consensus 478 ~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~ 539 (541)
..|+.++. ...|... .....+|++++. |+.++++++|+++++
T Consensus 397 ~~Gi~v~~------~~~p~~~--------------~~~~~lRisv~~~~t~edid~li~~L~~~l~ 442 (502)
T 3hbx_A 397 RYGWIVPA------YTMPPNA--------------QHITVLRVVIREDFSRTLAERLVIDIEKVMR 442 (502)
T ss_dssp TTTCBCCE------EECCTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCcEEee------ccCCccc--------------CCceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 65654431 1112110 024689999994 456667777777665
No 145
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.90 E-value=4.6e-23 Score=216.05 Aligned_cols=286 Identities=13% Similarity=0.122 Sum_probs=190.1
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcc------C-CCEEEEcCCCCcchHH-HHHhhcccC----C
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP------A-GGHIVTTTDCYRKTRI-FIETVLPKM----G 274 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~------~-GD~VIv~~~~y~~~~~-~~~~~l~~~----G 274 (541)
|.++..++++++|++++|.+++++++||++|+.+++..+.. + +|+|++.++.|++... .+. ..... +
T Consensus 79 ~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~-~~g~~~~~~~ 157 (397)
T 2ord_A 79 FWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLT-ATGQPKYQKP 157 (397)
T ss_dssp SEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHH-HSBCHHHHGG
T ss_pred cCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhh-ccCChhhccc
Confidence 56788999999999999988889999999999999988753 5 4789999999977443 222 11110 0
Q ss_pred -----cEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCc-c---cCHHHHHHHHHhCCCEEEEEcCCCCCCc-ccc-
Q 009172 275 -----ITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLR-C---VDVKLVSDLCHKKGAIVCIDGTFATPLN-QKA- 343 (541)
Q Consensus 275 -----i~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~-v---~di~~Ia~la~~~gillvvDea~a~~~~-~~~- 343 (541)
..+..++..|+++|++++++ ++++|++++|+||||. + .++++|.++|+++|++||+||+|..... ..+
T Consensus 158 ~~p~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~ 236 (397)
T 2ord_A 158 FEPLVPGFEYFEFNNVEDLRRKMSE-DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF 236 (397)
T ss_dssp GCSCCTTEEEECTTCHHHHHHHCCT-TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS
T ss_pred cCCCCCCeeEecCCCHHHHHHHhhc-CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccch
Confidence 12666777899999999986 5999999999999999 4 4588999999999999999999864211 111
Q ss_pred --cccC--CcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHH
Q 009172 344 --LSLG--ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTA 417 (541)
Q Consensus 344 --l~~g--aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~--~r~~~~~~na 417 (541)
...+ .|++ |++|.++++ ...|+++++++++ .++..........++..++.+...++.+. ...++..+++
T Consensus 237 ~~~~~~~~~d~~--s~sK~~~~G--~r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 311 (397)
T 2ord_A 237 AYQKYGVVPDVL--TTAKGLGGG--VPIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTVIKELTKEGFLEEVEEKG 311 (397)
T ss_dssp HHHHHTCCCSEE--EECGGGGTT--SCCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred hhhhhCCCCCee--eeccccCCC--cCeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1223 6866 678999953 2467777877765 54322222223456676666666666543 2345556677
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcc
Q 009172 418 LRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAI 497 (541)
Q Consensus 418 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~ 497 (541)
+.+.+.|++.+. .+|.+ ....+.|++++|++++. ....++.+.|...++.+..|
T Consensus 312 ~~l~~~L~~~~~----~~~~~----------~~~~~~g~~~~~~~~~~-~~~~~l~~~l~~~gi~v~~~----------- 365 (397)
T 2ord_A 312 NYLMKKLQEMKE----EYDVV----------ADVRGMGLMIGIQFREE-VSNREVATKCFENKLLVVPA----------- 365 (397)
T ss_dssp HHHHHHHHHHHH----HCTTE----------EEEEEETTEEEEEECTT-SCHHHHHHHHHHTTEECEEE-----------
T ss_pred HHHHHHHHHHHH----hCCce----------EEEEEEeEEEEEEECCh-HHHHHHHHHHHHCCCEEccC-----------
Confidence 777777765310 01110 00123577999999742 12345555554445544332
Q ss_pred cccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhhC
Q 009172 498 MSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHAI 541 (541)
Q Consensus 498 ~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~~i 541 (541)
.++.||||++. |+.+++++.|.+++++|
T Consensus 366 ----------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 397 (397)
T 2ord_A 366 ----------------GNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397 (397)
T ss_dssp ----------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred ----------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHhhC
Confidence 14689999653 45566677777777654
No 146
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.90 E-value=4.7e-22 Score=204.03 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=191.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEE
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGAE--STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~ 278 (541)
.|.+++...+..+++++++++++|.+ ..+++++|++|+.+++..++++||+|++++++|+++... ..++..|+++.
T Consensus 40 ~~~~~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~--~~~~~~g~~~~ 117 (359)
T 1svv_A 40 TQHAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHET--GAIEATGHKVV 117 (359)
T ss_dssp CCCCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHHCCTTEEEEEETTSHHHHSST--THHHHTTCCEE
T ss_pred hccccccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHHhCCCCEEEEcccchHHHHHH--HHHhcCCCeeE
Confidence 35566667788999999999999864 467778888999999999999999999999999886531 02445688888
Q ss_pred EeCCC----CHHHHHHhccCC------CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCC---CCC---C
Q 009172 279 VIDPA----DMEGLEAALNNN------NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF---ATP---L 339 (541)
Q Consensus 279 ~vd~~----dle~Le~ai~~~------~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~---a~~---~ 339 (541)
.++.+ |+++|+++++++ ++++|++++| ||||.+.| +++|.++|+++|+++|+|+++ ..+ .
T Consensus 118 ~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~ 196 (359)
T 1svv_A 118 TAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVN 196 (359)
T ss_dssp EECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC
T ss_pred EEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc
Confidence 88754 589999998763 2899999999 79999998 889999999999999999997 311 1
Q ss_pred ccccc--ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhHH--HHHHHHHHH
Q 009172 340 NQKAL--SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGMK--TLHLRVQQQ 413 (541)
Q Consensus 340 ~~~~l--~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~--~s~~~a~l~l~~l~--tl~~r~~~~ 413 (541)
..... ..+.|+++.|++|+.++.+ .|+++.++++++.++......+.. .+......+...++ .+....++.
T Consensus 197 ~~~~~~~~~~~d~~~~s~~K~g~~~~---~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 273 (359)
T 1svv_A 197 DLTLADIARLTDMFYIGATKAGGMFG---EALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNLFFELGAHS 273 (359)
T ss_dssp CCCHHHHHHHCSEEEEECTTTTCSSC---EEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTHHHHHHHHH
T ss_pred chhhhhhhhcCCEEEEecccCCCCCc---eEEEEEcccHHHHHHHHHhcCCcccccchhhHHHHHHHHhhhhHHHHHHHH
Confidence 11211 1357999999999854433 588888888877776543222221 11111111111222 234455666
Q ss_pred HHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCC-ceeecCCCcccce
Q 009172 414 NSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIP-YIAPSFGGCESIV 492 (541)
Q Consensus 414 ~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~-~iavS~G~~~sl~ 492 (541)
.++++.+.+.| +.+++. +..| ..++++++.++ .++.+.|... ++.+ +|.
T Consensus 274 ~~~~~~l~~~L-~~~~~~-~~~~----------------~~~~~~~~~~~------~~~~~~l~~~~gi~v-~~~----- 323 (359)
T 1svv_A 274 NKMAAILKAGL-EACGIR-LAWP----------------SASNQLFPILE------NTMIAELNNDFDMYT-VEP----- 323 (359)
T ss_dssp HHHHHHHHHHH-HHTTCC-BSSC----------------CSSSEECBEEE------HHHHHHHTTTEECEE-EEE-----
T ss_pred HHHHHHHHHHh-ccCCeE-EccC----------------CccceEEEEcC------HHHHHHHHHhcCEEE-Eec-----
Confidence 67788888888 444442 1112 13567777775 2455666544 5544 110
Q ss_pred ecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 493 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 493 ~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.+ ..++.|||+++...+++.++.+.++|+
T Consensus 324 -~~-----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~ 352 (359)
T 1svv_A 324 -LK-----------------DGTCIMRLCTSWATEEKECHRFVEVLK 352 (359)
T ss_dssp -ET-----------------TTEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred -cc-----------------CCCceEEEEccCcCCHHHHHHHHHHHH
Confidence 00 124689999987655555555555554
No 147
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.90 E-value=2.9e-22 Score=209.83 Aligned_cols=292 Identities=16% Similarity=0.085 Sum_probs=193.7
Q ss_pred CchhHHHHH----HHHHHHhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEe
Q 009172 208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI 280 (541)
Q Consensus 208 ~~p~~~~Le----~~LA~l~g~~~~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~v 280 (541)
+++....++ +++++++|.+.. +++++|++|+.+++.+++++||+|+++.++|+++.... ..+...|. ....+
T Consensus 63 g~~~~~~~e~~ar~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~-~~~~~~g~~~~~~~~ 141 (407)
T 2dkj_A 63 GCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHG-SRVNFSGKLYKVVSY 141 (407)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGT-CTTSHHHHHSEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHhCCCcceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchH-HHHHhcCceEEEEec
Confidence 455544444 499999998755 77899999999999999999999999999998863111 11222232 34444
Q ss_pred C------CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-----ccccccCCc
Q 009172 281 D------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGAD 349 (541)
Q Consensus 281 d------~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~gaD 349 (541)
+ ..|++++++++++.++++|++++|+|| .+.|+++|.++|+++|+++|+|++|..++. ..+.. ..|
T Consensus 142 ~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~d 218 (407)
T 2dkj_A 142 GVRPDTELIDLEEVRRLALEHRPKVIVAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLP-YAH 218 (407)
T ss_dssp CCCTTTSSCCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTT-TCS
T ss_pred CCCcccCccCHHHHHHHHhhcCCeEEEEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccc-ccc
Confidence 2 247999999997424899999999997 678999999999999999999999875221 11122 379
Q ss_pred EEEECCccccCCCCCceEEEEEeC-hHHHHHHHHHhhhcC-CCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHH
Q 009172 350 LVLHSATKFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAE 422 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g-~~~s~~~a~l~l~~l~-----tl~~r~~~~~~na~~la~ 422 (541)
+++.|+||+++|+. +|+++++ +++++.++.....+. +..++.....+...++ .+....++..++++++.+
T Consensus 219 i~~~s~sK~l~g~~---~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~ 295 (407)
T 2dkj_A 219 VVTSTTHKTLRGPR---GGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAE 295 (407)
T ss_dssp EEEEESSGGGCCCS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCCCC---ceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999988653 5999998 788888876543222 2334432222222332 345556677788888888
Q ss_pred HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccccccc
Q 009172 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWD 502 (541)
Q Consensus 423 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~ 502 (541)
.|+++ ++. +..+ ++.|+++++.++........+.+.|...++.+..|.... |..
T Consensus 296 ~L~~~-g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~---------~~~ 349 (407)
T 2dkj_A 296 ELARR-GYR-IVTG---------------GTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPF---------DPK 349 (407)
T ss_dssp HHHHT-TCE-EGGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEECCCTT---------CSS
T ss_pred HHHhC-Cce-eecC---------------CCCceEEEEECcccCCCHHHHHHHHHHcCceecCCcCcc---------ccc
Confidence 89876 432 2111 124778999987310123345555555577666554210 000
Q ss_pred CCHHHHHhcCCCCCeEEEEec--------CCCHHHHHHHHHHHHhh
Q 009172 503 LSQSERLKYGIMDNLVRFSFG--------VEDFEDLKADVLQALHA 540 (541)
Q Consensus 503 ~~~~~~~~~gi~~~~IRlSvG--------~Ed~edli~dL~~AL~~ 540 (541)
. ...++.+|+|++ .++.+.+++.|.+++++
T Consensus 350 -~-------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 350 -P-------PRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp -C-------TTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred -c-------ccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 0 012468999984 35778888888877653
No 148
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.89 E-value=3.9e-21 Score=203.66 Aligned_cols=210 Identities=17% Similarity=0.215 Sum_probs=165.0
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC-----
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA----- 283 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~----- 283 (541)
.+...+||++|++++|.++++++++|++|+.+++.++. +||+|+++.++|.++... +...|+++++++.+
T Consensus 51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~-~gd~Vlv~~~~~~~~~~~----~~~~G~~~~~v~~~~~~~~ 125 (424)
T 2po3_A 51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG-LTGEVIMPSMTFAATPHA----LRWIGLTPVFADIDPDTGN 125 (424)
T ss_dssp CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT-CCSEEEEESSSCTHHHHH----HHHTTCEEEEECBCTTTSS
T ss_pred CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC-CCCEEEECCCccHHHHHH----HHHcCCEEEEEecCCCcCC
Confidence 37899999999999999889999999999999999875 789999999999987643 34568888888643
Q ss_pred -CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc--cccccCCcEEEECCc--cc
Q 009172 284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--KALSLGADLVLHSAT--KF 358 (541)
Q Consensus 284 -dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~--~~l~~gaDivv~S~s--K~ 358 (541)
|+++|++++++ ++++|+++ ||+|.+.++++|.++|+++|+++|+|++|+.+... .++....|+++.|+| |.
T Consensus 126 ~d~~~l~~~i~~-~~~~v~~~---~~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~~~~~~~di~~~S~sk~K~ 201 (424)
T 2po3_A 126 LDPDQVAAAVTP-RTSAVVGV---HLWGRPCAADQLRKVADEHGLRLYFDAAHALGCAVDGRPAGSLGDAEVFSFHATKA 201 (424)
T ss_dssp BCHHHHGGGCCT-TEEEEEEE---CGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSS
T ss_pred cCHHHHHHhhCc-CCcEEEEE---CCCCCcCCHHHHHHHHHHcCCEEEEECccccCCeECCeecccccCEEEEeCCCCCC
Confidence 79999999987 59999984 58999999999999999999999999998853322 222222589999998 88
Q ss_pred cCCCCCceEEEEEeC-hHHHHHHHHHhhhc------------CCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 009172 359 IGGHNDVLAGSISGS-GKLVTQIRNLHHVL------------GGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILE 425 (541)
Q Consensus 359 lgg~g~v~gG~vv~~-~~li~~l~~~~~~~------------g~~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la~~L~ 425 (541)
++|. .+|+++++ ++++++++...... ...+++..+++++..++.+....++..++++++.+.|.
T Consensus 202 l~~~---~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 278 (424)
T 2po3_A 202 VNAF---EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAFPEVIDRNRRNHAAYREHLA 278 (424)
T ss_dssp SCCS---SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCC---CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8763 47899998 78888887654321 11345666666666677777667777778888888887
Q ss_pred hCCCc
Q 009172 426 AHPKV 430 (541)
Q Consensus 426 ~~p~v 430 (541)
+.+++
T Consensus 279 ~~~g~ 283 (424)
T 2po3_A 279 DLPGV 283 (424)
T ss_dssp SCTTE
T ss_pred cCCCc
Confidence 76654
No 149
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.89 E-value=1.1e-21 Score=209.10 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=184.5
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCCcchHHHHHhhcc-----
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP----- 271 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all---------~~G-D~VIv~~~~y~~~~~~~~~~l~----- 271 (541)
+.++...+|+++|+++.|.+.+++++||++|+.+++..+. .+| |+||+.++.|++..........
T Consensus 104 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~ 183 (433)
T 1z7d_A 104 FFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCT 183 (433)
T ss_dssp SEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC------------------
T ss_pred cCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCcccc
Confidence 5678899999999999998889999999999999988653 467 9999999999875322111111
Q ss_pred ----cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEEcCCCCCCc---
Q 009172 272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN--- 340 (541)
Q Consensus 272 ----~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~----di~~Ia~la~~~gillvvDea~a~~~~--- 340 (541)
.....+..++..|+++|+++++.+++++|++|.++|++|.+. ++++|.++|++||++||+||++.....
T Consensus 184 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~ 263 (433)
T 1z7d_A 184 SNFGPFAPQFSKVPYDDLEALEEELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 263 (433)
T ss_dssp --------CEEEECTTCHHHHHHHHTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ccCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc
Confidence 011355667777999999999423599999987778899876 699999999999999999999863211
Q ss_pred ---ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009172 341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS 415 (541)
Q Consensus 341 ---~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~ 415 (541)
........|++ |++|.++++ ...+|++++++++++.+...........++..++.+...++.+.. ..++..+
T Consensus 264 ~~~~~~~~~~~di~--t~sK~l~~G-~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 340 (433)
T 1z7d_A 264 LLCVHHYNVKPDVI--LLGKALSGG-HYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEALNVLINEKLCENAEK 340 (433)
T ss_dssp SSGGGGGTCCCSEE--EECGGGGTT-SSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhhHhcCCCCCEE--EECccccCC-CCCeEEEEECHHHHhhhccccccccCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 12223356776 688999953 134789999988877664422212223467777666666665542 3455556
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecC
Q 009172 416 TALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 416 na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~p 495 (541)
+.+++.+.|++... .+|.. ...++.|++++|++++......++.+.|...++.+..+
T Consensus 341 ~~~~l~~~L~~l~~----~~~~~----------~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~--------- 397 (433)
T 1z7d_A 341 LGGPFLENLKRELK----DSKIV----------RDVRGKGLLCAIEFKNELVNVLDICLKLKENGLITRDV--------- 397 (433)
T ss_dssp HHHHHHHHHHHHHT----TCTTE----------EEEEEETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE---------
T ss_pred HHHHHHHHHHHHHH----hCCCe----------EEEEeeeeEEEEEEccChhHHHHHHHHHHHCCeEEecC---------
Confidence 66777776664210 01110 01134678999999742112345555554445444321
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
..+.|||+++... .+.+++.|.++++
T Consensus 398 ------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 427 (433)
T 1z7d_A 398 ------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVK 427 (433)
T ss_dssp ------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 1468999887643 4445555555544
No 150
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.89 E-value=6.7e-22 Score=213.96 Aligned_cols=277 Identities=12% Similarity=0.085 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhcc-----CC---CEEEEcCCCCcchHHHHHhhcccCCcEEEE
Q 009172 212 TVVVEEKMSALEGAE----STVIMASGMSASTVMLLALVP-----AG---GHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (541)
Q Consensus 212 ~~~Le~~LA~l~g~~----~~i~~sSG~~Ai~~al~all~-----~G---D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~ 279 (541)
.+++++++++++|.+ ..+++++|++|+.++++++.+ +| |+|+++.+.|.++.. .+...|++++.
T Consensus 109 ~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~~~~Vi~~~~~h~~~~~----~~~~~G~~~~~ 184 (497)
T 3mc6_A 109 ESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGITEPEIIAPVTAHAGFDK----AAYYFGMKLRH 184 (497)
T ss_dssp HHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCSSCEEEEETTSCHHHHH----HHHHSCCEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEeCCccHHHHH----HHHHcCCeEEE
Confidence 345566778888875 577888888999999998865 56 899999999988654 34456888888
Q ss_pred eCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-------------c
Q 009172 280 IDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-------------N 340 (541)
Q Consensus 280 vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-------------~ 340 (541)
++.+ |+++|++++++ ++++|++++|+||+|.+.|+++|.++|+++|+++|+|++|+.+. .
T Consensus 185 v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~ 263 (497)
T 3mc6_A 185 VELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPL 263 (497)
T ss_dssp ECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCC
T ss_pred EecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCcc
Confidence 8643 58899999987 49999999999999999999999999999999999999987321 1
Q ss_pred ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh--hhcCC----------Ccc--HHHHHHHHHhHH--
Q 009172 341 QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGG----------ALN--PNAAYLIIRGMK-- 404 (541)
Q Consensus 341 ~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~--~~~g~----------~~s--~~~a~l~l~~l~-- 404 (541)
.+....|+|+++.|++|+++++.+ .|+++.+++.+....... ...++ ... ...++.+++.+.
T Consensus 264 ~~~~~~g~d~~~~s~~K~l~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~ 341 (497)
T 3mc6_A 264 LDFRVPGVTSISCDTHKYGFAPKG--SSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341 (497)
T ss_dssp CSTTSTTCCEEEEETTTTTCCCSS--CEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEECchhhcCCCCC--ceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhHHHHHHHHHHHhHH
Confidence 333456899999999999755432 577777665544321100 00111 011 233455554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceee
Q 009172 405 TLHLRVQQQNSTALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAP 483 (541)
Q Consensus 405 tl~~r~~~~~~na~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iav 483 (541)
.+....++..++++++.+.|++ .|++..+..| .++++.|..++ .....+.+.|...++.+
T Consensus 342 ~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~-----------------~~~~v~~~~~~--~~~~~l~~~L~~~Gi~v 402 (497)
T 3mc6_A 342 GYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP-----------------RYSVISFSSKT--LNIHELSDRLSKKGWHF 402 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC-----------------CSSEEEEECTT--TTHHHHHHHHHTTTCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC-----------------CeeEEEEeCCC--CCHHHHHHHHHhCCEEE
Confidence 3456677888899999999999 4776432222 35688888754 23455666665555544
Q ss_pred cCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEec---CCCHHHHHHHHHHHHhh
Q 009172 484 SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG---VEDFEDLKADVLQALHA 540 (541)
Q Consensus 484 S~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG---~Ed~edli~dL~~AL~~ 540 (541)
+.+. .++.+|+++. .|+.++++++|.++++.
T Consensus 403 ~~~~--------------------------~~~~~ri~~~~~t~e~i~~~~~~L~~~l~~ 436 (497)
T 3mc6_A 403 NALQ--------------------------KPVALHMAFTRLSAHVVDEICDILRTTVQE 436 (497)
T ss_dssp EECC--------------------------SSCCEEEECCTTTTCTHHHHHHHHHHHHHH
T ss_pred ecCC--------------------------CCCeEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 3221 1235688775 47888999999888764
No 151
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.89 E-value=1.4e-21 Score=204.36 Aligned_cols=291 Identities=14% Similarity=0.115 Sum_probs=191.3
Q ss_pred chhHHHHHHHHHHHhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCC--cEEEEeC----
Q 009172 209 NPTTVVVEEKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVID---- 281 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~G--i~v~~vd---- 281 (541)
....+++++.+++++|.++.++ ++||++|+++++.. +.+||+||+..+.|++.. +...+...| .++.+++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~ 110 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSYR--WTQILEKGKFAKSSTVLTAERT 110 (379)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHHH--HHHHHHHHCCSSEEEEEECEES
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhHH--HHHHHHHhCCCCceEEEecccc
Confidence 3577889999999999876555 46888999998754 579999999999998743 223333334 3555543
Q ss_pred ----------CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcccccccCC
Q 009172 282 ----------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGA 348 (541)
Q Consensus 282 ----------~~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~~l~~ga 348 (541)
..|+++++++++++++++|++.+++|++|.+.| +++|.++|+++|+++|+|++++.........+|+
T Consensus 111 g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~g~~~~~~~~~~~ 190 (379)
T 3ke3_A 111 EDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIASGCVWLDMKELGI 190 (379)
T ss_dssp SCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTCTTCCCCHHHHTC
T ss_pred ccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEecccCCccccccccCC
Confidence 358999999995325899999999999999999 9999999999999999999987333344556789
Q ss_pred cEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh-----------------hhcC-----CCccHHHHHHHHHhHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----------------HVLG-----GALNPNAAYLIIRGMKTL 406 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-----------------~~~g-----~~~s~~~a~l~l~~l~tl 406 (541)
|+++.|++|+++++. .+|+++.++++++.+.... ...| .+.++...+.+..+++.+
T Consensus 191 d~~~~s~~K~l~~~~--g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~ 268 (379)
T 3ke3_A 191 DVLISAPQKGWSSTP--CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA 268 (379)
T ss_dssp SEEEECTTTTTCSCC--CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CEEEecchhhcCCCC--ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999998764 2689999998887765310 0011 244554444444444433
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCce
Q 009172 407 -----HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYI 481 (541)
Q Consensus 407 -----~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~i 481 (541)
+.+.++..++++++.+.|++. ++. +..+. . ...+.+..+.+++ .+. .+.+.|...++
T Consensus 269 ~~~g~~~~~~~~~~l~~~l~~~l~~~-g~~-~~~~~-----~--------~~~~~i~~~~~~~-~~~--~~~~~L~~~Gi 330 (379)
T 3ke3_A 269 KEIGFDILRDAQWELGNRVRKVLTDK-GIE-SVAAE-----G--------FEAPGVVVSYTER-DDM--HKGSAFAEAGL 330 (379)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHT-TCC-BSBCT-----T--------CBCSSEEEEECSC-HHH--HSSHHHHHTTC
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHc-CCE-ecCCc-----c--------ccCceEEEEccCC-cch--HHHHHHHHCCe
Confidence 344455667777888888775 222 11110 0 0123455555543 221 11333333466
Q ss_pred eecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009172 482 APSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 482 avS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~~ 540 (541)
.++.|...+. .. ....+.||+|+.. ++++.+++.|++++++
T Consensus 331 ~v~~g~~~~~-~~-----------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~ 375 (379)
T 3ke3_A 331 QIAAGVPLKV-GE-----------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDE 375 (379)
T ss_dssp CCEECCCCSS-CC-----------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHH
T ss_pred EEeCCccccc-cc-----------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHH
Confidence 6665532110 00 0135789999874 6677777777777654
No 152
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.89 E-value=3.1e-21 Score=206.17 Aligned_cols=288 Identities=15% Similarity=0.109 Sum_probs=192.0
Q ss_pred CCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhc---------cCC-CEEEEcCCCCcchHHHHHhhcc-----
Q 009172 207 YGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALV---------PAG-GHIVTTTDCYRKTRIFIETVLP----- 271 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all---------~~G-D~VIv~~~~y~~~~~~~~~~l~----- 271 (541)
+.++...+++++|++++|.+.+++++||++|+.+++..+. .+| |+||+.++.|++..........
T Consensus 115 ~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~ 194 (439)
T 2oat_A 115 FYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSY 194 (439)
T ss_dssp SEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcc
Confidence 5678899999999999998888999999999999998764 367 8999999999875322211111
Q ss_pred ----cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCccc----CHHHHHHHHHhCCCEEEEEcCCCCCCc---
Q 009172 272 ----KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVKLVSDLCHKKGAIVCIDGTFATPLN--- 340 (541)
Q Consensus 272 ----~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~----di~~Ia~la~~~gillvvDea~a~~~~--- 340 (541)
....++..++..|+++|+++++.+++++|++|..+|++|.+. ++++|.++|++||++||+||++.....
T Consensus 195 ~~~~p~~~~v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~ 274 (439)
T 2oat_A 195 DGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR 274 (439)
T ss_dssp TTSCSCCTTEEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred cCCCCCCCCeEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc
Confidence 111456677778999999999533589999987778899877 699999999999999999999853211
Q ss_pred ---ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHHH--HHHHHHH
Q 009172 341 ---QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHL--RVQQQNS 415 (541)
Q Consensus 341 ---~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~ 415 (541)
.+......|++ |++|.++++ ...+|++++++++++.+...........++..+..+...++.+.. ..++..+
T Consensus 275 ~~~~~~~~~~~Di~--t~sK~l~~G-~~~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 351 (439)
T 2oat_A 275 WLAVDYENVRPDIV--LLGKALSGG-LYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEEENLAENADK 351 (439)
T ss_dssp SSGGGGGTCCCSEE--EECGGGGTT-SSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhHHHhCCCCcEE--EecccccCC-CCCeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 12223346876 788999963 134789999988877665422222223467777666666665542 3445556
Q ss_pred HHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccceec
Q 009172 416 TALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQ 494 (541)
Q Consensus 416 na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G~~~sl~~~ 494 (541)
+.+++.+.|++.. +|.. ...++.|.++++++++.. ....++.+.|...++.+..+
T Consensus 352 ~~~~l~~~L~~l~------~~~~----------~~~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-------- 407 (439)
T 2oat_A 352 LGIILRNELMKLP------SDVV----------TAVRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-------- 407 (439)
T ss_dssp HHHHHHHHHTTSC------TTTE----------EEEEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS--------
T ss_pred HHHHHHHHHHHhc------CCCc----------EEEEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC--------
Confidence 6677777776531 1110 011346789999997430 12345555554445544321
Q ss_pred CcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 495 PAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 495 pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
.++.|||+++.. +.+.+++.|.+++++
T Consensus 408 -------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 408 -------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp -------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred -------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 247899988754 445555556555554
No 153
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.89 E-value=8.2e-22 Score=209.02 Aligned_cols=268 Identities=11% Similarity=0.082 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHHHh----CC--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCC---------
Q 009172 210 PTTVVVEEKMSALE----GA--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--------- 274 (541)
Q Consensus 210 p~~~~Le~~LA~l~----g~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~G--------- 274 (541)
+...+|+++|++++ +. +..++++++++++.+ +..++++||+|+++.|+|++....+.. ....|
T Consensus 98 ~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~-~g~~~~~~~~~~~~ 175 (432)
T 3ei9_A 98 QGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVI-MGQTGQFNTDVQKY 175 (432)
T ss_dssp TCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHH-HTCSCCEETTTTEE
T ss_pred CCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHH-cCCccccccccccc
Confidence 45688999999986 43 345555555688876 578889999999999999997765533 22222
Q ss_pred cEEEEeCCCCH----HHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc----cc
Q 009172 275 ITATVIDPADM----EGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ----KA 343 (541)
Q Consensus 275 i~v~~vd~~dl----e~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~----~~ 343 (541)
.++.+++.++. .++++ .+ ++++|++++|+||||.+++ +++|+++|++||++||+|++|..+... ..
T Consensus 176 ~~~~~~~~~~~~~~~~~l~~--~~-~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~ 252 (432)
T 3ei9_A 176 GNIEYMRCTPENGFFPDLST--VG-RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSI 252 (432)
T ss_dssp TTCEEEECCGGGTTSCCGGG--CC-CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSG
T ss_pred CceEEeccCcccCCcCChhh--CC-CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCCh
Confidence 23444433211 12222 23 5899999999999999987 557777799999999999998753221 11
Q ss_pred c----ccCCcEEEECCccccCCCCCceEEEEEeChHH--------HHHHHHHhhhcCCCccHHHHHHHHHh-----HHHH
Q 009172 344 L----SLGADLVLHSATKFIGGHNDVLAGSISGSGKL--------VTQIRNLHHVLGGALNPNAAYLIIRG-----MKTL 406 (541)
Q Consensus 344 l----~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~l--------i~~l~~~~~~~g~~~s~~~a~l~l~~-----l~tl 406 (541)
. ..+.++++.|+||.+|..| ...|++++++++ ++.+...........++.....+... .+.+
T Consensus 253 ~~~~~~~~~~i~~~S~SK~~g~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~ 331 (432)
T 3ei9_A 253 FEIPGAEEVAMETASFSNYAGFTG-VRLGWTVIPKKLLYSDGFPVAKDFNRIICTCFNGASNISQAGALACLTPEGLEAM 331 (432)
T ss_dssp GGSTTGGGTEEEEEESHHHHCTTT-TCCEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHSSHHHHHHH
T ss_pred hhcCCCCCeEEEEecchhccCCcc-cceEEEEEChHHhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcccHHHH
Confidence 1 1245799999999998665 346888888877 67776654443444455544433333 3345
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc-CCCceeecC
Q 009172 407 HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL-KIPYIAPSF 485 (541)
Q Consensus 407 ~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L-~~~~iavS~ 485 (541)
....++..++++.+.+.|+++ ++. +..| ..|.++++.+++. ....+.+.+ +..++.+..
T Consensus 332 ~~~~~~~~~~~~~l~~~L~~~-g~~-~~~~----------------~~~~~~~~~~~~~--~~~~~~~~ll~~~gv~v~~ 391 (432)
T 3ei9_A 332 HKVIGFYKENTNIIIDTFTSL-GYD-VYGG----------------KNAPYVWVHFPNQ--SSWDVFAEILEKTHVVTTP 391 (432)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCC-EEEC----------------SSSSEEEEECTTS--CHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHHHHC-Cce-ecCC----------------CcceEEEEECCCC--CHHHHHHHHHHHCCEEEeC
Confidence 556677778888999999876 332 1111 1456889999742 122333332 223566665
Q ss_pred CCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC
Q 009172 486 GGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 486 G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
|..+. + ..++.||||++.
T Consensus 392 g~~f~----~-----------------~~~~~iRis~~~ 409 (432)
T 3ei9_A 392 GSGFG----P-----------------GGEGFVRVSAFG 409 (432)
T ss_dssp GGGGC----G-----------------GGTTEEEEECCS
T ss_pred chHhC----C-----------------CCCCEEEEEecC
Confidence 54321 0 125799999865
No 154
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.89 E-value=1.4e-21 Score=207.30 Aligned_cols=285 Identities=14% Similarity=0.139 Sum_probs=191.3
Q ss_pred CCCchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHhhcc------
Q 009172 206 RYGNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETVLP------ 271 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~-------~G-D~VIv~~~~y~~~~~~~~~~l~------ 271 (541)
.|.++...+|+++|+++.|.+.+++++||++|+.+++..+.. +| ++||+.++.|++..........
T Consensus 95 ~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~ 174 (420)
T 2pb2_A 95 VFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSD 174 (420)
T ss_dssp TSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHT
T ss_pred ccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccc
Confidence 357789999999999999988899999999999999998765 77 5999999999875332211111
Q ss_pred ---cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcc----cCHHHHHHHHHhCCCEEEEEcCCCCCCc----
Q 009172 272 ---KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRC----VDVKLVSDLCHKKGAIVCIDGTFATPLN---- 340 (541)
Q Consensus 272 ---~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v----~di~~Ia~la~~~gillvvDea~a~~~~---- 340 (541)
.....+..++..|+++|++++++ ++++|++|+++|++|.+ .++++|.++|++||++||+||+|.....
T Consensus 175 ~~~p~~~~~~~~~~~d~~~le~~i~~-~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 175 GFGPKPADIIHVPFNDLHAVKAVMDD-HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp TSSSCCSCEEEECTTCHHHHHHHCCT-TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cCCCCCCCeEEecCCCHHHHHHHhcc-CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 11123666777799999999987 59999999999988852 3588999999999999999999853211
Q ss_pred --ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHH
Q 009172 341 --QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNST 416 (541)
Q Consensus 341 --~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl~--~r~~~~~~n 416 (541)
........|++ |++|.+++ | ...|++++++++++.++..........++..++.+...++.+. ...++..++
T Consensus 254 ~~~~~~~~~~dii--t~sK~l~~-G-~~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~~~~~~~~~~~ 329 (420)
T 2pb2_A 254 FAYMHYGVTPDIL--TSAKALGG-G-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTK 329 (420)
T ss_dssp SHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeE--EecccccC-C-CceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 12223456877 57899995 3 3468888888877665542221222346777776666666543 334555566
Q ss_pred HHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccc
Q 009172 417 ALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESI 491 (541)
Q Consensus 417 a~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G~~~sl 491 (541)
.+++.+.|++. |.+.. .++.|++++|+++... ....++.+.|...++.+..|
T Consensus 330 ~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~----- 386 (420)
T 2pb2_A 330 RQQFVQHLQAIDEQFDIFSD------------------IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNA----- 386 (420)
T ss_dssp HHHHHHHHHHHHHHHCCEEE------------------EEEETTEEEEEECGGGTTCHHHHHHHHHHTTEECEES-----
T ss_pred HHHHHHHHHHHHhcCCCeEE------------------EEecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeC-----
Confidence 77777777653 22211 1235789999996421 12455666665455544432
Q ss_pred eecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009172 492 VDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 492 ~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~~ 540 (541)
.++.|||++.+ |+.+++++.|.+++++
T Consensus 387 ----------------------~~~~iRl~~~~~~t~eei~~~~~~l~~~l~~ 417 (420)
T 2pb2_A 387 ----------------------GADVMRFAPSLVVEEADIHEGMQRFAQAVGK 417 (420)
T ss_dssp ----------------------STTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 14689999654 4556666666666653
No 155
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.89 E-value=6.5e-21 Score=200.14 Aligned_cols=303 Identities=13% Similarity=0.087 Sum_probs=205.7
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-ccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-----
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLAL-VPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----- 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~al-l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----- 282 (541)
.|...+||++||+++|.+++++++||++|+.+++.++ +++||+|+++.++|+++...+ ...|+++.+++.
T Consensus 31 g~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~~~~~~~~~----~~~g~~~~~v~~~~~~~ 106 (394)
T 1o69_A 31 GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPI----CYLKAKPVFIDCDETYN 106 (394)
T ss_dssp THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCGGGTHHH----HHTTCEEEEECBCTTSS
T ss_pred ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCccHHHHHHH----HHcCCEEEEEEeCCCCC
Confidence 4779999999999999988999999999999999999 999999999999999976544 336888888874
Q ss_pred CCHHHHHHhccCC--CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCccccc---c-cCCcEEEECCc
Q 009172 283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL---S-LGADLVLHSAT 356 (541)
Q Consensus 283 ~dle~Le~ai~~~--~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l---~-~gaDivv~S~s 356 (541)
.|+++|++++++. ++++|++++ |+|...|+++|.++|+++|+++|+|++|+.+...... . .++|+...|.+
T Consensus 107 ~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~ 183 (394)
T 1o69_A 107 IDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGN 183 (394)
T ss_dssp BCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTT
T ss_pred cCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCC
Confidence 3789999998752 489999964 8999999999999999999999999999854322111 1 23566666779
Q ss_pred cccCCCCCceEEEEEeC-hHHHHHHHHHhhhcCC--------------CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISGS-GKLVTQIRNLHHVLGG--------------ALNPNAAYLIIRGMKTLHLRVQQQNSTALRMA 421 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~~-~~li~~l~~~~~~~g~--------------~~s~~~a~l~l~~l~tl~~r~~~~~~na~~la 421 (541)
|.++|.+ +|+++++ ++++++++........ .+++..+.+++..++.+..++++..++++++.
T Consensus 184 K~l~~~~---~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~~~~~~~~~~~~~l~ 260 (394)
T 1o69_A 184 KIITTSG---GGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYK 260 (394)
T ss_dssp SSSCCSS---CEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCC---ceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998654 7899985 7888888765332100 03455666655556677777888888999999
Q ss_pred HHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH--------------------HHHHHHHHHcCCCce
Q 009172 422 EILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL--------------------TATIKFIDALKIPYI 481 (541)
Q Consensus 422 ~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~--------------------~~~~~~l~~L~~~~i 481 (541)
+.|++. + .+ ++.. ... .....+++|.++.+. .....+.+.|...++
T Consensus 261 ~~L~~~--~-~~-~~~~-~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI 326 (394)
T 1o69_A 261 EFLGEY--F-SF-LDEL-ENS---------RSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIEDLKNKQI 326 (394)
T ss_dssp HHHTTT--E-EC-CCCC-TTE---------ECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHHTTC
T ss_pred HHhccc--c-cc-cCCC-CCC---------cceeEEEEEEecchhhccccccccccccccccccccCHHHHHHHHHHcCC
Confidence 999875 2 22 2211 000 001125777776321 245566777766677
Q ss_pred eecCCCcccceecCccccc--ccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 482 APSFGGCESIVDQPAIMSY--WDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 482 avS~G~~~sl~~~pa~~~~--~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
.++.|... +.+.|..... ..++-... +..+.+|+.++...+++.++.+.++|++
T Consensus 327 ~v~~~~~~-~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~t~edi~~~~~~l~~ 382 (394)
T 1o69_A 327 ETRPLWKA-MHTQEVFKGAKAYLNGNSEL----FFQKGICLPSGTAMSKDDVYEISKLILK 382 (394)
T ss_dssp CCBCCCCC-GGGCGGGTTCEEEECSHHHH----HHHHEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred cccccCCc-cccchhhhccCCCCChHHHH----HhcCeEEccCCCCCCHHHHHHHHHHHHH
Confidence 77766421 1112211100 01111111 1124566666777777777777776653
No 156
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.88 E-value=2.4e-21 Score=203.08 Aligned_cols=212 Identities=12% Similarity=0.048 Sum_probs=143.4
Q ss_pred hHHHHHHHHHHHhC--------CCcEEE--eCCHHHHHHHHHHHhc---cCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 211 TTVVVEEKMSALEG--------AESTVI--MASGMSASTVMLLALV---PAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 211 ~~~~Le~~LA~l~g--------~~~~i~--~sSG~~Ai~~al~all---~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
...+++++++++++ .++.++ +++|++|+.+++..+. ++||+|++++|+|.+....+ +..|.++
T Consensus 72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~----~~~g~~~ 147 (401)
T 7aat_A 72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIF----RDAGLQL 147 (401)
T ss_dssp CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHH----HHTTCEE
T ss_pred CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHH----HHcCCee
Confidence 45688888888775 244544 6667799998876654 89999999999999876444 4457777
Q ss_pred EEeCCC-------CHHHHHHhccC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcccc--
Q 009172 278 TVIDPA-------DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQKA-- 343 (541)
Q Consensus 278 ~~vd~~-------dle~Le~ai~~--~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~~~-- 343 (541)
..++.. |++++++.+++ .++++|++++||||||.+++ +++|+++|++||+++|+|++|........
T Consensus 148 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~ 227 (401)
T 7aat_A 148 QAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINR 227 (401)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred EeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccc
Confidence 766531 67766666542 25899999999999998876 66888999999999999999876543211
Q ss_pred ---------cccCCcEEEECCccccCCCCCceEEEEEe---ChH----HHHHHHHHhhhcCCCccHHHHHHHHHhH----
Q 009172 344 ---------LSLGADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGM---- 403 (541)
Q Consensus 344 ---------l~~gaDivv~S~sK~lgg~g~v~gG~vv~---~~~----li~~l~~~~~~~g~~~s~~~a~l~l~~l---- 403 (541)
......+++.|+||.++.+|.. .|+++. +++ +.+.++..........+...+.++...+
T Consensus 228 ~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~R-iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 306 (401)
T 7aat_A 228 DAWALRHFIEQGIDVVLSQSYAKNMGLYGER-AGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPE 306 (401)
T ss_dssp HTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHH
T ss_pred cHHHHHHHHhcCCcEEEEecCCcccccccCc-eEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCCHH
Confidence 1224568999999999977754 566554 555 3344444333333333333333332222
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhC
Q 009172 404 ------KTLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 404 ------~tl~~r~~~~~~na~~la~~L~~~ 427 (541)
+.+....++..++++.+.+.|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 336 (401)
T 7aat_A 307 LRKEWLVEVKGMADRIISMRTQLVSNLKKE 336 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223444455667778888888775
No 157
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.88 E-value=2.7e-21 Score=203.16 Aligned_cols=286 Identities=15% Similarity=0.082 Sum_probs=176.7
Q ss_pred HHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHh-hcccCCcEEEEeCC-----CCHH
Q 009172 214 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDP-----ADME 286 (541)
Q Consensus 214 ~Le~~LA~l~g~~~~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~-~l~~~Gi~v~~vd~-----~dle 286 (541)
.+++.+++++|.+.. +++++|++|+.+++.+++++||+|+++.++|++....... .....++.+..++. .|++
T Consensus 75 ~~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 154 (417)
T 3n0l_A 75 LAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYE 154 (417)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHH
T ss_pred HHHHHHHHHhCCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHH
Confidence 345589999998755 8899999999999999999999999999999875432211 11223455555543 4899
Q ss_pred HHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-----ccccccCCcEEEECCccccCC
Q 009172 287 GLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIGG 361 (541)
Q Consensus 287 ~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~gaDivv~S~sK~lgg 361 (541)
+|++++++.++++|++++|+| |.+.|+++|.++|++||+++|+|+++..+.. ..+.. ++|+++.|+||+++|
T Consensus 155 ~l~~~i~~~~~~~v~~~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g 231 (417)
T 3n0l_A 155 KVREIAKKEKPKLIVCGASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP-YAHVVSSTTHKTLRG 231 (417)
T ss_dssp HHHHHHHHHCCSEEEECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT-TCSEEEEESSTTTCS
T ss_pred HHHHHHHhcCCeEEEECCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc-cceEEEeeCccccCC
Confidence 999999733589999888776 8899999999999999999999999643221 11222 479999999999966
Q ss_pred CCCceEEEEEeC-hHHHHHHHHHhhhc-CCCccHHHHHH---HHHh-H-HHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Q 009172 362 HNDVLAGSISGS-GKLVTQIRNLHHVL-GGALNPNAAYL---IIRG-M-KTLHLRVQQQNSTALRMAEILEAHPKVKRVH 434 (541)
Q Consensus 362 ~g~v~gG~vv~~-~~li~~l~~~~~~~-g~~~s~~~a~l---~l~~-l-~tl~~r~~~~~~na~~la~~L~~~p~v~~V~ 434 (541)
+. +|+++++ +++.+.++...... .+...+..... ++.. + +.+..+.++..++++.+.+.|.+ .++. +.
T Consensus 232 ~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~-~~ 306 (417)
T 3n0l_A 232 PR---GGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD-RKFK-LV 306 (417)
T ss_dssp CS---CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-TTCE-EG
T ss_pred CC---eeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-CCce-ec
Confidence 53 6999988 68888877654322 11222222111 1111 1 34456666777888889999987 3332 21
Q ss_pred CCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCC
Q 009172 435 YPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIM 514 (541)
Q Consensus 435 ~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~ 514 (541)
.++ ..++++++.+.+.......+.+.|...++.++.+..... ..| ...
T Consensus 307 ~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~-~~~----------------~~~ 354 (417)
T 3n0l_A 307 SDG---------------TDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGE-IRS----------------PFI 354 (417)
T ss_dssp GGS---------------CSSSEEEEECTTSSSCHHHHHHHHHHTTEECEECCCTTC-CSC----------------TTT
T ss_pred cCC---------------CCceEEEEEcccCCCCHHHHHHHHHHcCeEEeccccCCC-Ccc----------------cCC
Confidence 111 135678888753111122333333334555554321100 000 012
Q ss_pred CCeEEEEecC--------CCHHHHHHHHHHHHh
Q 009172 515 DNLVRFSFGV--------EDFEDLKADVLQALH 539 (541)
Q Consensus 515 ~~~IRlSvG~--------Ed~edli~dL~~AL~ 539 (541)
.+.+|+++.. ++.+.+++.|.++|+
T Consensus 355 ~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~ 387 (417)
T 3n0l_A 355 TSGLRLGTPALTARGFKEKEMEIVSNYIADILD 387 (417)
T ss_dssp CSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 4679998752 456666777766664
No 158
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.88 E-value=1.1e-21 Score=202.77 Aligned_cols=274 Identities=12% Similarity=0.037 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHhCCC---cEEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 211 TTVVVEEKMSALEGAE---STVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~~---~~i~~-sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
..+++++++++++|.+ +++++ ++|++|+.+++.+++++||+|++..+.|.+.+ +...++..| ++++++..
T Consensus 50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l~~~gd~vl~~~~~~~~~~--~~~~~~~~g-~~~~v~~~~~~ 126 (362)
T 2c0r_A 50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNFLKEGQTANYVMTGSWASK--ALKEAKLIG-DTHVAASSEAS 126 (362)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHH--HHHHHHHHS-CEEEEEECGGG
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhcCCCCCeEEEEecCcHhHH--HHHHHHHhC-CeEEEeccccc
Confidence 5778999999999985 44566 45669999999999999999998876654432 112344456 66655321
Q ss_pred ------CHHHHHHhccCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCc
Q 009172 284 ------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT 356 (541)
Q Consensus 284 ------dle~Le~ai~~~~tklV~lesp~NPtG~v-~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~s 356 (541)
|.++++ +++ +||+|++++|+||||.+ .|+++| +|+++|+|++|..+...-.+. ..|+++.|+|
T Consensus 127 ~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~-~~d~~~~s~~ 196 (362)
T 2c0r_A 127 NYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLN-QFGLVYAGAQ 196 (362)
T ss_dssp TTCSCCCGGGCC--CCT-TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred ccccCCCHHHcc--cCC-CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchh-HCcEEEEecc
Confidence 333332 665 59999999999999996 678876 899999999987654221122 2489999999
Q ss_pred cccCCCCCceEEEEEeChHHHHHHHHH------------hhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISGSGKLVTQIRNL------------HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~~~~li~~l~~~------------~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na~ 418 (541)
|++|+.| .|++++++++++.++.. .....++.+....+.+..+++. ++.+.++..++++
T Consensus 197 K~~g~~G---~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~ 273 (362)
T 2c0r_A 197 KNLGPSG---VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKAS 273 (362)
T ss_dssp TTTCCSS---CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccCcC---cEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9998665 58888888776554321 1122234555444444444443 3555666778888
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~ 498 (541)
++.+.|++++.+-.+..+ +.+ ..+++++|.+++ ......|.+.|...++.+..|..
T Consensus 274 ~l~~~L~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~-~~~~~~~~~~L~~~gi~~~~g~~---------- 329 (362)
T 2c0r_A 274 LIYDAIDQSGGFYRGCVD-----VDS--------RSDMNITFRLAS-EELEKEFVKASEQEGFVGLKGHR---------- 329 (362)
T ss_dssp HHHHHHHTSTTSSEESSC-----GGG--------BCSSEEEEECSC-HHHHHHHHHHHHHTTEESCBCCT----------
T ss_pred HHHHHHHHcCCccccCCC-----hHH--------cCCcEEEEEcCC-cchHHHHHHHHHHCCCeeccCCC----------
Confidence 888999876533112111 110 134578898864 24556777777666665543311
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
..+.||||++..++++.++.+.++|+
T Consensus 330 ---------------~~~~iRis~~~~~~~e~i~~l~~~l~ 355 (362)
T 2c0r_A 330 ---------------SVGGLRASIYNAVPYESCEALVQFME 355 (362)
T ss_dssp ---------------TTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred ---------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 02569999997655555566555554
No 159
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.88 E-value=1.2e-21 Score=205.90 Aligned_cols=282 Identities=12% Similarity=0.114 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhC-------CCcEEEeCCHH-HHHHHHHHHhccCCC----EEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 213 VVVEEKMSALEG-------AESTVIMASGM-SASTVMLLALVPAGG----HIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 213 ~~Le~~LA~l~g-------~~~~i~~sSG~-~Ai~~al~all~~GD----~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
.+||++||++++ .++.|++++|+ +++.+++.+++++|| +|++++|+|......+ +..|.++..+
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~----~~~g~~~~~~ 146 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEET----TYVRSGMYKW 146 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHH----HTTCBTTEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHH----HHcCCeEEEe
Confidence 789999999887 23456666665 999999999999999 9999999999866443 3446555544
Q ss_pred CCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCccccc--ccCCcEEEECCccc
Q 009172 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKAL--SLGADLVLHSATKF 358 (541)
Q Consensus 281 d~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l--~~gaDivv~S~sK~ 358 (541)
+.+ .+.++ .+ ++|+|++++|+||||.+++ +|++.++.+++++|+|++|.... ..++ ..+.++++.|+||.
T Consensus 147 ~~d-~~~l~---~~-~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~-~~~l~~~~~~~i~~~S~SK~ 218 (391)
T 3bwn_A 147 EGD-AWGFD---KK-GPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH-YTPITRRQDHDIMLFTFSKI 218 (391)
T ss_dssp EEE-STTCC---CC-SCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT-TSCCCCCBCCSEEEEEHHHH
T ss_pred cCC-HHHcC---CC-CCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC-CCccccCCCCeEEEEechhh
Confidence 322 22222 23 5899999999999999996 55442233349999999987421 1111 34678999999999
Q ss_pred cCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHH
Q 009172 359 IGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKT--------------LHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 359 lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~t--------------l~~r~~~~~~na~~la~~ 423 (541)
++.+|. ..|++++ ++++++.+...........+.....++...++. +....+...++++.+.+.
T Consensus 219 ~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 297 (391)
T 3bwn_A 219 TGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREV 297 (391)
T ss_dssp HSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 987763 4688886 889998888766543344455555444444443 333344556777888899
Q ss_pred HHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccC
Q 009172 424 LEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDL 503 (541)
Q Consensus 424 L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~ 503 (541)
|++++.+. +..|. .+. ...........|.++++.++.. +....++ +..++.+..|..+
T Consensus 298 L~~~~~~~-~~~p~-~~~--~~f~~~~~~~~g~~~~~~~~~~-~~~~~~l---~~~gV~v~pg~~f-------------- 355 (391)
T 3bwn_A 298 VKESDAFT-LPKYP-EAF--CNYFGKSLESYPAFAWLGTKEE-TDLVSEL---RRHKVMSRAGERC-------------- 355 (391)
T ss_dssp HHTCSSEE-CCCCC-CEE--ETTTTEEECCCCSEEEEEESSS-CCHHHHH---HHTTEECEEGGGG--------------
T ss_pred HHhCCCcc-cccCC-ccc--cccccccCCCcceEEEecCCcH-HHHHHHH---HHCCEEEccCCCC--------------
Confidence 98876532 21121 000 0000000122456789999742 2233333 3346676666432
Q ss_pred CHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 504 SQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 504 ~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
|..+++||||++. + ++.++.+.++|.
T Consensus 356 --------g~~~~~iRis~~~-~-~e~i~~~~~~L~ 381 (391)
T 3bwn_A 356 --------GSDKKHVRVSMLS-R-EDVFNVFLERLA 381 (391)
T ss_dssp --------TCCTTEEEEESCS-C-HHHHHHHHHHHH
T ss_pred --------CCCCCEEEEEecC-C-HHHHHHHHHHHH
Confidence 1235799999995 3 333344444443
No 160
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.88 E-value=1.2e-21 Score=214.65 Aligned_cols=159 Identities=13% Similarity=0.146 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHh----CC-------CcEEEeCCHHHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHhhcccCC
Q 009172 211 TTVVVEEKMSALE----GA-------ESTVIMASGMSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMG 274 (541)
Q Consensus 211 ~~~~Le~~LA~l~----g~-------~~~i~~sSG~~Ai~~al~a-----ll~~GD~VIv~~~~y~~~~~~~~~~l~~~G 274 (541)
...++++.+++++ +. ++.+++++|++|+.+++.+ ++++||+|+++.|+|.++. ..+...|
T Consensus 139 g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~----~~~~~~g 214 (533)
T 3f6t_A 139 CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYL----RIPELKD 214 (533)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHH----TSGGGGG
T ss_pred cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHH----HHHHHcC
Confidence 3456666666665 33 3455556666999999988 7899999999999998854 3445557
Q ss_pred cEEEEeCCC---------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHH---HHHHHHH-hCCCEEEEEcCCCCCCcc
Q 009172 275 ITATVIDPA---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVK---LVSDLCH-KKGAIVCIDGTFATPLNQ 341 (541)
Q Consensus 275 i~v~~vd~~---------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~---~Ia~la~-~~gillvvDea~a~~~~~ 341 (541)
.++..++.. |+++|++++++ ++++|++++|+||||.+++.+ +|+++|+ ++|+++|+|++|+.....
T Consensus 215 ~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~ 293 (533)
T 3f6t_A 215 YELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN 293 (533)
T ss_dssp SEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT
T ss_pred CeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC
Confidence 777776542 79999999987 599999999999999999866 7778888 689999999998754321
Q ss_pred --c--ccccCCcEEEECCccccCCCCCceEEEEEeChH
Q 009172 342 --K--ALSLGADLVLHSATKFIGGHNDVLAGSISGSGK 375 (541)
Q Consensus 342 --~--~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~ 375 (541)
. ....+.++++.|+||.+|.+|. ..|+++++++
T Consensus 294 ~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~ 330 (533)
T 3f6t_A 294 FKSIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEK 330 (533)
T ss_dssp CCCHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESS
T ss_pred ccCHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcH
Confidence 1 1122456999999999986663 4677777654
No 161
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.88 E-value=6.2e-21 Score=204.13 Aligned_cols=287 Identities=12% Similarity=-0.043 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHhCCC--c-----EEEeCCHHHHHHHHHHHhcc--------CC-----CEEEEcCCCCcchHHHHHhhcc
Q 009172 212 TVVVEEKMSALEGAE--S-----TVIMASGMSASTVMLLALVP--------AG-----GHIVTTTDCYRKTRIFIETVLP 271 (541)
Q Consensus 212 ~~~Le~~LA~l~g~~--~-----~i~~sSG~~Ai~~al~all~--------~G-----D~VIv~~~~y~~~~~~~~~~l~ 271 (541)
.+++++.+++++|.+ . .+++++|++|+.+++.++.. +| ++|++++ .|..+. ..+.
T Consensus 83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~h~~~~----~~~~ 157 (452)
T 2dgk_A 83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWH----KFAR 157 (452)
T ss_dssp HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-CCHHHH----HHHH
T ss_pred HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-CcHHHH----HHHH
Confidence 445666778999974 2 67888889999999887754 55 5999999 886644 3445
Q ss_pred cCCcEEEEeCCC------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC------CCEEEEEcCCCCCC
Q 009172 272 KMGITATVIDPA------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK------GAIVCIDGTFATPL 339 (541)
Q Consensus 272 ~~Gi~v~~vd~~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~------gillvvDea~a~~~ 339 (541)
..|+++++++.+ |+++|+++|++ +|++|++++|+||||.+.|+++|+++|+++ |+++++|++|+.+.
T Consensus 158 ~~G~~v~~v~~~~~~~~~d~~~l~~~i~~-~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~ 236 (452)
T 2dgk_A 158 YWDVELREIPMRPGQLFMDPKRMIEACDE-NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFL 236 (452)
T ss_dssp HTTCEEEECCCBTTBCSCCHHHHHHHCCT-TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred HcCceEEEEecCCCCCeECHHHHHHHHhh-CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHH
Confidence 568899888753 79999999987 499999999999999999999999999995 99999999987643
Q ss_pred c---cc--cc---ccCCcEEEECCccccCCCCCceEEEEEeCh-HHH-HHHHHHhhhcC----------CCc--cHHHHH
Q 009172 340 N---QK--AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KLV-TQIRNLHHVLG----------GAL--NPNAAY 397 (541)
Q Consensus 340 ~---~~--~l---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li-~~l~~~~~~~g----------~~~--s~~~a~ 397 (541)
. .. +. ..++|+++.|+||++.++.+ .|+++.++ +++ +.+.......+ ... .....|
T Consensus 237 ~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 314 (452)
T 2dgk_A 237 APFVAPDIVWDFRLPRVKSISASGHKFGLAPLG--CGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQY 314 (452)
T ss_dssp HHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSS--CEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSCBCHHHHHHH
T ss_pred HHhhCccchhhcCCCCCcEEEECcccccCCCCC--eEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCChhHHHHHHH
Confidence 2 11 11 23789999999998865542 57777754 333 33311111111 111 223344
Q ss_pred HHHHh--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCH---HHHHHH
Q 009172 398 LIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDL---TATIKF 472 (541)
Q Consensus 398 l~l~~--l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~---~~~~~~ 472 (541)
.+++. .+.+..++++..++++++.+.|++++.+..+ .|+.+. ...+++.|.+++.. .....+
T Consensus 315 aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~-~~~~~~------------~~~~~v~f~~~~~~~~~~~~~~l 381 (452)
T 2dgk_A 315 YEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFI-CTGRPD------------EGIPAVCFKLKDGEDPGYTLYDL 381 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEE-EECCTT------------TBSSEEEEEECTTCCCSCCHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEe-cCCCCC------------CCeEEEEEEecCcccccCCHHHH
Confidence 44443 3456677788889999999999998766433 332110 13578999987421 112455
Q ss_pred HHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 473 IDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 473 l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
.+.|...++.++. + ..|... -..+.+|+|++.. +.+.++++|+++++
T Consensus 382 ~~~L~~~Gi~v~~--~----~~~~~~--------------~~~~~lRis~~~~~t~e~id~li~~l~~~~~ 432 (452)
T 2dgk_A 382 SERLRLRGWQVPA--F----TLGGEA--------------TDIVVMRIMCRRGFEMDFAELLLEDYKASLK 432 (452)
T ss_dssp HHHHHHTTCBCCE--E----ECSTTC--------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeeee--e----eCCccc--------------CCeEEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 5555444443321 1 111100 0245899999975 44555555555543
No 162
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.88 E-value=2.7e-22 Score=206.66 Aligned_cols=274 Identities=11% Similarity=0.029 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHhCCC---cEEEeCCH-HHHHHHHHHHhccC---CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-
Q 009172 211 TTVVVEEKMSALEGAE---STVIMASG-MSASTVMLLALVPA---GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~~---~~i~~sSG-~~Ai~~al~all~~---GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~- 282 (541)
..+++++++++++|.+ +.++++++ ++|+.+++.+++.+ ||+|+++.++|... ..+...| ++++++.
T Consensus 49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~~~g~~vi~~~~~~~~~-----~~~~~~g-~~~~v~~~ 122 (360)
T 1w23_A 49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKGTIGNYVLTGSWSEKAL-----KEAKLLG-ETHIAAST 122 (360)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHH-----HHHHTTS-EEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCCCcccEEEecchhHHHH-----HHHHHhC-CeEEeecc
Confidence 5789999999999975 34555565 79999999998865 56777766665431 1234568 7777653
Q ss_pred -----CCHHHHHH-hccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCc
Q 009172 283 -----ADMEGLEA-ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSAT 356 (541)
Q Consensus 283 -----~dle~Le~-ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~s 356 (541)
.|++++++ ++++ +||+|++++|+||||.++| + +++++|++||+|++++.+.....+. ..|+++.|+|
T Consensus 123 ~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~nptG~~~~--~---i~~~~~~~li~D~a~~~~~~~~~~~-~~di~~~s~s 195 (360)
T 1w23_A 123 KANSYQSIPDFSEFQLNE-NDAYLHITSNNTIYGTQYQ--N---FPEINHAPLIADMSSDILSRPLKVN-QFGMIYAGAQ 195 (360)
T ss_dssp GGGTSCSCCCGGGCCCCT-TEEEEEEESEETTTTEECS--S---CCCCCSSCEEEECTTTTTSSCCCGG-GCSEEEEETT
T ss_pred cccCcCCccchHhhccCC-CCCEEEEeCCCCCcceecc--c---ccccCCceEEEechhhcCCCCcCcc-cCCEEEEEcc
Confidence 36778888 8876 5999999999999999987 3 3348999999999987654221121 1389999999
Q ss_pred cccCCCCCceEEEEEeChHHHHHHHHHh------------hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISGSGKLVTQIRNLH------------HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~~~~li~~l~~~~------------~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na~ 418 (541)
|.+++.| .|+++++++++++++... ....++.+....+.+...++. +....++..++++
T Consensus 196 K~~~~~G---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 272 (360)
T 1w23_A 196 KNLGPSG---VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAK 272 (360)
T ss_dssp TTTSCTT---CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cccCCCC---cEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9998665 578888887766554321 011123444444433444443 3445666778888
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~ 498 (541)
++.+.|++++.+..... .|.. ..+.+++|.+++ .....++++.|...++.+..|..
T Consensus 273 ~l~~~L~~~~~~~~~~~-----~~~~--------~~~~~~~~~~~~-~~~~~~~~~~l~~~gi~~~~~~~---------- 328 (360)
T 1w23_A 273 IIYDTIDESNGFYVGHA-----EKGS--------RSLMNVTFNLRN-EELNQQFLAKAKEQGFVGLNGHR---------- 328 (360)
T ss_dssp HHHHHHHTTTTSSEESS-----CGGG--------BCSSEEEEECSS-HHHHHHHHHHHHHTTEESCBCCT----------
T ss_pred HHHHHHHHccCcccccC-----Cchh--------ccCcEEEEEcCC-CccHHHHHHHHHHCCeeeecCCC----------
Confidence 89999988764311110 0110 124489999874 34456777777666665543311
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
.++.||||++..++++.++.+.++|+
T Consensus 329 ---------------~~~~iRis~~~~~~~~~i~~~~~~l~ 354 (360)
T 1w23_A 329 ---------------SVGGCRASIYNAVPIDACIALRELMI 354 (360)
T ss_dssp ---------------TTCSEEEECCTTSCHHHHHHHHHHHH
T ss_pred ---------------CCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 14689999997766666666666654
No 163
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.88 E-value=1.1e-20 Score=198.82 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=148.8
Q ss_pred CchhHHHHHHHHHHHh-CC-------CcEEE--eCCHHHHHHHHHH--HhccCC-----CEEEEcCCCCcchHHHHHhhc
Q 009172 208 GNPTTVVVEEKMSALE-GA-------ESTVI--MASGMSASTVMLL--ALVPAG-----GHIVTTTDCYRKTRIFIETVL 270 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~-g~-------~~~i~--~sSG~~Ai~~al~--all~~G-----D~VIv~~~~y~~~~~~~~~~l 270 (541)
..+...+|+++|++++ +. +++++ +++|++|+.+++. .++.+| |+|+++.|+|++.... +
T Consensus 72 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~----~ 147 (412)
T 1ajs_A 72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV----F 147 (412)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH----H
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHH----H
Confidence 3455689999999988 42 46677 7778899999853 556899 9999999999986543 3
Q ss_pred ccCCcE-EEEeCC---C----CHHHHHHhccCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCC
Q 009172 271 PKMGIT-ATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFAT 337 (541)
Q Consensus 271 ~~~Gi~-v~~vd~---~----dle~Le~ai~~~--~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~ 337 (541)
...|.+ +..++. . |++++++++++. ++++|++++|+||||.+++ +++|.++|+++|+++|+|++|..
T Consensus 148 ~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~ 227 (412)
T 1ajs_A 148 TTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQG 227 (412)
T ss_dssp HHTTCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTT
T ss_pred HHcCCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccc
Confidence 445777 666654 2 789999988642 4789999999999999977 55899999999999999999765
Q ss_pred CCcc----c--cc---c--cCCcEEEECCccccCCCCCceEEEEEe---ChHH----HHHHHHHhhhcCCCccHHHHHHH
Q 009172 338 PLNQ----K--AL---S--LGADLVLHSATKFIGGHNDVLAGSISG---SGKL----VTQIRNLHHVLGGALNPNAAYLI 399 (541)
Q Consensus 338 ~~~~----~--~l---~--~gaDivv~S~sK~lgg~g~v~gG~vv~---~~~l----i~~l~~~~~~~g~~~s~~~a~l~ 399 (541)
.... . +. . ...++++.|+||.++++|. ..|++++ ++++ ++.++..........++..++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 306 (412)
T 1ajs_A 228 FASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIV 306 (412)
T ss_dssp TTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHH
T ss_pred ccCCcccccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHH
Confidence 4321 1 11 1 1234889999999998663 4677877 7764 44444422222222344444444
Q ss_pred HHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 400 IRGMK----------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 400 l~~l~----------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
...++ .+....++..++.+.+.+.|+++
T Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1ajs_A 307 ARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEAL 344 (412)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443 23344455567777888888775
No 164
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.87 E-value=4.3e-21 Score=204.07 Aligned_cols=292 Identities=14% Similarity=0.088 Sum_probs=190.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhC--C-CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHhhcccCC-
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEG--A-ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMG- 274 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g--~-~~~i~~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~~l~~~G- 274 (541)
.+.+.++.++...+|+++|+++++ . +++++++||++|+..++..+ ..++++||+.++.|++.............
T Consensus 77 ~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 156 (439)
T 3dxv_A 77 GATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQ 156 (439)
T ss_dssp CSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC------
T ss_pred CccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCch
Confidence 345677889999999999999994 4 57888999999999999875 34678888889998775432211111000
Q ss_pred ----------cEEEEeCCC----------CHHHHHHhcc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCC
Q 009172 275 ----------ITATVIDPA----------DMEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGA 327 (541)
Q Consensus 275 ----------i~v~~vd~~----------dle~Le~ai~---~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gi 327 (541)
..+..++.. |+++|+++++ ++++++|++++++|++|.+.+ +++|.++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~ 236 (439)
T 3dxv_A 157 ADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGI 236 (439)
T ss_dssp -------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTC
T ss_pred hhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCC
Confidence 011223322 5899999983 335899999999999999998 9999999999999
Q ss_pred EEEEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHH
Q 009172 328 IVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIR 401 (541)
Q Consensus 328 llvvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~ 401 (541)
+||+||+|.... .........|++ |++|.+++ |. ..|++++++++++.+......... .++..+..++.
T Consensus 237 ~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G~-riG~~~~~~~~~~~~~~~~~~~t~-~~~~~~~aa~a 311 (439)
T 3dxv_A 237 LVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKGLGG-GL-PLSAVIAPAEILDCASAFAMQTLH-GNPISAAAGLA 311 (439)
T ss_dssp EEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TS-CCEEEEEEHHHHTSCSSSSCCTTT-TCHHHHHHHHH
T ss_pred EEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcchhcC-Cc-ceEEEEECHHHHhhhcCCCcCCCc-ccHHHHHHHHH
Confidence 999999986321 112223345666 78999996 43 568999998888776543222233 56666666666
Q ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc-------CCHHH
Q 009172 402 GMKTLH--LRVQQQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD-------GDLTA 468 (541)
Q Consensus 402 ~l~tl~--~r~~~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~-------g~~~~ 468 (541)
.++.+. ...++..++.+++.+.|.+ ++.+..+ ++.|.++++++. .....
T Consensus 312 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~ 373 (439)
T 3dxv_A 312 VLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDI------------------RGRGLACGMELVCDRQSREPARAE 373 (439)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCCHHH
Confidence 665432 2344555666666666554 3433221 235788999883 12344
Q ss_pred HHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 469 TIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 469 ~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
...+.+.+...++.+..|+ ...+.|||++... +.+++++.|.++|++
T Consensus 374 ~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 424 (439)
T 3dxv_A 374 TAKLIYRAYQLGLVVYYVG-------------------------MNGNVLEFTPPLTITETDIHKALDLLDRAFSE 424 (439)
T ss_dssp HHHHHHHHHHHTEECEEES-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCcEEeecC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 5566666654455544331 1247899987654 445556666666543
No 165
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.87 E-value=8.3e-21 Score=203.14 Aligned_cols=225 Identities=13% Similarity=0.104 Sum_probs=154.2
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHh-CCC-------cEEE--eCCHHHHHHH--HHHHhccCCCEEEEcCCCCcchHHHHH
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALE-GAE-------STVI--MASGMSASTV--MLLALVPAGGHIVTTTDCYRKTRIFIE 267 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~-g~~-------~~i~--~sSG~~Ai~~--al~all~~GD~VIv~~~~y~~~~~~~~ 267 (541)
..+.|. +.+...++++++++++ |.+ +.++ +++|++|+.+ .+.+++.+||+|++++|+|.+....+.
T Consensus 86 ~~~~Y~--~~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~ 163 (448)
T 3meb_A 86 YNKEYP--PVAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYD 163 (448)
T ss_dssp TCCSCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHH
T ss_pred CCCCCC--CCcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHH
Confidence 344454 3345678999999987 653 4566 7777799977 556778899999999999998775554
Q ss_pred hhcccCCcEEEEeCC---C-----CHHHHHHhccC--CCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEEcC
Q 009172 268 TVLPKMGITATVIDP---A-----DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGT 334 (541)
Q Consensus 268 ~~l~~~Gi~v~~vd~---~-----dle~Le~ai~~--~~tklV~lesp~NPtG~v~di~---~Ia~la~~~gillvvDea 334 (541)
..++..|.++..++. . |++++++++++ .++++|++++|+||||.+++.+ +|+++|+++|+++|+|++
T Consensus 164 ~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Dea 243 (448)
T 3meb_A 164 KVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSA 243 (448)
T ss_dssp HHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEES
T ss_pred hhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecc
Confidence 223366777766653 3 78999999873 2478999999999999998855 599999999999999999
Q ss_pred CCCCCccc------cc----ccC-CcEEEECCccccCCCCCceEEEE--Ee---------Ch----HHHHHHHHHhhhcC
Q 009172 335 FATPLNQK------AL----SLG-ADLVLHSATKFIGGHNDVLAGSI--SG---------SG----KLVTQIRNLHHVLG 388 (541)
Q Consensus 335 ~a~~~~~~------~l----~~g-aDivv~S~sK~lgg~g~v~gG~v--v~---------~~----~li~~l~~~~~~~g 388 (541)
|....... .. ..+ ..+++.|+||.++..|.. .|++ +. ++ ++++.+........
T Consensus 244 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~R-iG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 322 (448)
T 3meb_A 244 YQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGER-IGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTW 322 (448)
T ss_dssp CTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGC-CEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCcccc-ceeeeeeeccccccccCCHHHHHHHHHHHHHHHhccc
Confidence 87543221 01 123 347899999999977644 4665 44 34 45555555444333
Q ss_pred CCccHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 389 GALNPNAAYLIIRGMK----------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 389 ~~~s~~~a~l~l~~l~----------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
...+...++++...++ .+....++..++++.+.+.|+++
T Consensus 323 ~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~ 371 (448)
T 3meb_A 323 SMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKR 371 (448)
T ss_dssp SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444454444433332 24444555667778888888775
No 166
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=99.87 E-value=3e-21 Score=202.73 Aligned_cols=253 Identities=16% Similarity=0.126 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHh-hcccCCcEEEEe--C---C
Q 009172 210 PTTVVVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVI--D---P 282 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~~~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~-~l~~~Gi~v~~v--d---~ 282 (541)
+..+.+++++++++|.+.. +++++|++|+.+++.+++++||+|+++.++|+++...... .....++....+ + .
T Consensus 76 ~~~~~~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 155 (420)
T 3gbx_A 76 VVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGK 155 (420)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHhCCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCC
Confidence 3344566899999998654 6689999999999999999999999999999874311111 111112232222 2 2
Q ss_pred CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-----ccccccCCcEEEECCcc
Q 009172 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATK 357 (541)
Q Consensus 283 ~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~gaDivv~S~sK 357 (541)
.|+++|+++++++++++|++++|+||+ +.|+++|.++|++||++||+|+++..+.. ..... .+|+++.|+||
T Consensus 156 ~d~~~l~~~i~~~~~~~v~~~~~~~~~--~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~-~~di~~~s~sK 232 (420)
T 3gbx_A 156 IDYDEMAKLAKEHKPKMIIGGFSAYSG--VVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP-HAHVVTTTTHK 232 (420)
T ss_dssp CCHHHHHHHHHHHCCSEEEECCTTCCS--CCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT-TSSEEEEESSG
T ss_pred cCHHHHHHHHHhcCCeEEEEecCccCC--ccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccc-cCCEEEeeccc
Confidence 589999999976458999999999864 78999999999999999999999754322 12222 48999999999
Q ss_pred ccCCCCCceEEEEEeCh---HHHHHHHHHhhh--cCCCccHHHHHH--HH-HhH-HHHHHHHHHHHHHHHHHHHHHHhCC
Q 009172 358 FIGGHNDVLAGSISGSG---KLVTQIRNLHHV--LGGALNPNAAYL--II-RGM-KTLHLRVQQQNSTALRMAEILEAHP 428 (541)
Q Consensus 358 ~lgg~g~v~gG~vv~~~---~li~~l~~~~~~--~g~~~s~~~a~l--~l-~~l-~tl~~r~~~~~~na~~la~~L~~~p 428 (541)
+++|+. ||++++++ ++.+.++..... .+....+..+.+ ++ ..+ +.+..+.++..++++++.+.|.+.
T Consensus 233 ~~~g~~---gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~- 308 (420)
T 3gbx_A 233 TLAGPR---GGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNR- 308 (420)
T ss_dssp GGCSCS---CEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCC---ceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc-
Confidence 997553 69999987 777777654322 222222222221 22 111 344556677778888898988873
Q ss_pred CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009172 429 KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF 485 (541)
Q Consensus 429 ~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~ 485 (541)
++. +..+ ...++++++.++........+.+.|+..++.+..
T Consensus 309 g~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 349 (420)
T 3gbx_A 309 GYK-VVSG---------------GTENHLFLLDLVDKNLTGKEADAALGRANITVNK 349 (420)
T ss_dssp TCE-EGGG---------------SCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEE
T ss_pred CCe-eccC---------------CCCCeEEEEEcCCCCCCHHHHHHHHHHCCcEecc
Confidence 332 2111 1145688888753111223333344334555543
No 167
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.87 E-value=1.3e-20 Score=202.35 Aligned_cols=283 Identities=12% Similarity=0.110 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHhCCCc-EEEeCCHH-HHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----
Q 009172 211 TTVVVEEKMSALEGAES-TVIMASGM-SASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~~~-~i~~sSG~-~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---- 282 (541)
..+++++++++++|.+. ++++++|+ .++.+++.++.. +|++||++.++|.+... .++..|++++.++.
T Consensus 134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~----~~~~~G~~~~~v~~~~~~ 209 (456)
T 2z67_A 134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIK----AVSFVGMNMRLVETVLDG 209 (456)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH----HHHHTTCEEEEECCEEET
T ss_pred HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHH----HHHHcCCCceEEEEeccC
Confidence 45678999999999864 56777777 566656665433 77889999999988553 34446888887764
Q ss_pred ----CCHHHHHHhc-cC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-cccc---cc--CC
Q 009172 283 ----ADMEGLEAAL-NN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-QKAL---SL--GA 348 (541)
Q Consensus 283 ----~dle~Le~ai-~~---~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-~~~l---~~--ga 348 (541)
.|+++|+++| ++ .++.+|++++|+||+|.+.|+++|.++|+++|+++++|++|+.... ..+. .. ++
T Consensus 210 ~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~ 289 (456)
T 2z67_A 210 DRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRV 289 (456)
T ss_dssp TEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCC
T ss_pred CCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCC
Confidence 3799999999 52 3588899999999999999999999999999999999999875432 1111 12 79
Q ss_pred cEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCC--ccHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHH
Q 009172 349 DLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGA--LNPNAAYLIIRGM--KTLHLRVQQQNSTALRMAEI 423 (541)
Q Consensus 349 Divv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~--~s~~~a~l~l~~l--~tl~~r~~~~~~na~~la~~ 423 (541)
|+++.|+||+++++. .+|+++. ++++++.+... ..|.. ......+.++..+ +.+....++..++++++.+.
T Consensus 290 D~~~~s~hK~~~~p~--g~G~l~~~~~~~~~~l~~~--~~g~~~~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~ 365 (456)
T 2z67_A 290 DAVVSSSDKNLLTPI--GGGLVYSTDAEFIKEISLS--YPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDEL 365 (456)
T ss_dssp SEEEEEHHHHHCCCS--SCEEEEESCHHHHHHHHTT--SCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCC--CeEEEEEcCHHHHhhcCcC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876543 2688888 56777776432 22322 1123333333333 34555667777888999998
Q ss_pred HHhCC---CceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE--cCCHHHHHHHHHHcCCCce---eec--CCCccccee
Q 009172 424 LEAHP---KVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV--DGDLTATIKFIDALKIPYI---APS--FGGCESIVD 493 (541)
Q Consensus 424 L~~~p---~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l--~g~~~~~~~~l~~L~~~~i---avS--~G~~~sl~~ 493 (541)
|++.+ ++ .+..| . ++++|.+ ++. ...+.+.|...++ .+. .| .+.
T Consensus 366 L~~~~~~~g~-~v~~~-----------------~-~~v~~~~~~~~~---~~~l~~~L~~~gi~~~rv~~~~g-~f~--- 419 (456)
T 2z67_A 366 LNDLSKKTGG-KFLDV-----------------E-SPIASCISVNSD---PVEIAAKLYNLRVTGPRGIKKTD-HFG--- 419 (456)
T ss_dssp HHHHHHHSSC-CBCCC-----------------C-CSSEEEEECSSC---HHHHHHHHHHTTEESCEEECTTC-HHH---
T ss_pred HHhcccccCC-EecCC-----------------C-CeEEEEEecccH---HHHHHHHHHHcCCCcceEEeecC-ccc---
Confidence 88764 42 12211 1 3566777 432 1223333322221 111 00 000
Q ss_pred cCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 494 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 494 ~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..|.. -...++||+|+++.++++.++.+.++|++
T Consensus 420 ----G~~~~---------~~~~~~vr~s~~~~~t~eeid~~l~~L~~ 453 (456)
T 2z67_A 420 ----NCYLG---------TYTHDYIVMNAAIGVRTEDIVNSVSKLEK 453 (456)
T ss_dssp ----HTCSS---------CCSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred ----ccccc---------ccCcchhhhhhhcCCCHHHHHHHHHHHHH
Confidence 00000 01247999999998888888888888875
No 168
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.79 E-value=5.3e-24 Score=223.02 Aligned_cols=284 Identities=15% Similarity=0.115 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHh----C----CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-
Q 009172 212 TVVVEEKMSALE----G----AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP- 282 (541)
Q Consensus 212 ~~~Le~~LA~l~----g----~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~- 282 (541)
..++++++++++ | .+.++++++|++|+.+++.+++++||+|++..+.|++.... +...|.++..++.
T Consensus 68 ~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~----~~~~g~~~~~~~~~ 143 (392)
T 3b1d_A 68 SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAFTKEGEAVLINSPVYPPFARS----VRLNNRKLVSNSLK 143 (392)
Confidence 667777777764 3 23455666667999999999999999999999999986643 3445666665543
Q ss_pred -------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-----cc--c-
Q 009172 283 -------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-----KA--L- 344 (541)
Q Consensus 283 -------~dle~Le~ai~~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-----~~--l- 344 (541)
.|++++++++++.++++|++++|+||||.+++ +++|.++|+++|+++|+|++|...... .. +
T Consensus 144 ~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~ 223 (392)
T 3b1d_A 144 EENGLFQIDFEQLENDIVENDVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVS 223 (392)
Confidence 36788988887335899999999999999987 889999999999999999998754321 11 1
Q ss_pred c--cCCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHHhhhcC-CCccHHHHHHHHHhHHH----HHHHHHHHHHH
Q 009172 345 S--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNLHHVLG-GALNPNAAYLIIRGMKT----LHLRVQQQNST 416 (541)
Q Consensus 345 ~--~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~~~~~g-~~~s~~~a~l~l~~l~t----l~~r~~~~~~n 416 (541)
. .+.++++.|+||.++.+| ...|++++++ ++++.++.....++ ...++..++.+...++. +....++..++
T Consensus 224 ~~~~~~~i~~~s~sK~~~~~G-~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~ 302 (392)
T 3b1d_A 224 PDFKDFALVLSSATKTFNIAG-TKNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYGKPWLVALKAVLEEN 302 (392)
Confidence 1 345689999999997554 3468888764 58888776554443 12344444444334432 22233344455
Q ss_pred HHHHHHHHHh-CCCceEEeCCCCCCCchhhhHhhhcCCcccE-EEEEEcCCHHHHHHHHHHcC-CCceeecCCCccccee
Q 009172 417 ALRMAEILEA-HPKVKRVHYPGLKSHPEHHIATQQMTGFGGV-VSFEVDGDLTATIKFIDALK-IPYIAPSFGGCESIVD 493 (541)
Q Consensus 417 a~~la~~L~~-~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~-vsf~l~g~~~~~~~~l~~L~-~~~iavS~G~~~sl~~ 493 (541)
++.+.+.|++ +|.+..+ .+.|++ ++++++........+.+.|. ..++.+..|..+..
T Consensus 303 ~~~l~~~l~~~~~~~~~~------------------~~~~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-- 362 (392)
T 3b1d_A 303 IQFAVEYFAQEAPRLKVM------------------KPQGTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS-- 362 (392)
Confidence 6666666665 3433211 112344 46777531123455666663 55666665533210
Q ss_pred cCcccccccCCHHHHHhcCCCCCeEEEEecCC--CHHHHHHHHHHHHh
Q 009172 494 QPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE--DFEDLKADVLQALH 539 (541)
Q Consensus 494 ~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E--d~edli~dL~~AL~ 539 (541)
..++.+||+++.. +.++.++.|.++|+
T Consensus 363 -------------------~~~~~iRi~~~~~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 363 -------------------EGELHARLNIAAPKSLVEEICKRIVCCLP 391 (392)
Confidence 1256899999863 44455555555543
No 169
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.87 E-value=3.2e-21 Score=201.75 Aligned_cols=292 Identities=15% Similarity=0.105 Sum_probs=186.9
Q ss_pred CchhHHHHH----HHHHHHhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCC--cEEEEe
Q 009172 208 GNPTTVVVE----EKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMG--ITATVI 280 (541)
Q Consensus 208 ~~p~~~~Le----~~LA~l~g~~~~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~G--i~v~~v 280 (541)
+++...+++ +++++++|.+.. +++++|++|+.+++.+++++||+|+++.+.|+++..... .+...| +++..+
T Consensus 63 ~~~~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 141 (405)
T 2vi8_A 63 GCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGS-PVNFSGVQYNFVAY 141 (405)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTC-TTSHHHHHSEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccc-hhhhccceeEEEec
Confidence 345555655 699999998765 457899999999999999999999999999987642110 001112 355555
Q ss_pred CC------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc---ccccc-cCCcE
Q 009172 281 DP------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN---QKALS-LGADL 350 (541)
Q Consensus 281 d~------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~---~~~l~-~gaDi 350 (541)
+. .|+++|++++++.++++|++ +|+|. |...|+++|.++|+++|+++|+|++|+.+.. ..+.. .+.|+
T Consensus 142 ~~~~~~~~~d~~~l~~~i~~~~~~~v~~-~~~~~-~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di 219 (405)
T 2vi8_A 142 GVDPETHVIDYDDVREKARLHRPKLIVA-AAAAY-PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHF 219 (405)
T ss_dssp CBCTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSC-CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSE
T ss_pred ccccccCCcCHHHHHHHHHhcCCeEEEE-eCCCC-CccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCE
Confidence 42 37999999987524889888 55553 5677899999999999999999999874211 11111 15799
Q ss_pred EEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcC-CCccHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHH
Q 009172 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG-GALNPNAAYLIIRGMK-----TLHLRVQQQNSTALRMAEIL 424 (541)
Q Consensus 351 vv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g-~~~s~~~a~l~l~~l~-----tl~~r~~~~~~na~~la~~L 424 (541)
++.|+||+++|+. ||++++++++++.++.....+. ++.++.....+...++ .+....++..++++++.+.|
T Consensus 220 ~~~s~sK~~~g~~---gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 296 (405)
T 2vi8_A 220 VTTTTHKTLRGPR---GGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASAL 296 (405)
T ss_dssp EEEESSSTTCCCS---CEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCC---CeEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999998543 4999999888888876542221 2223332222222332 34555667778888888888
Q ss_pred HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCC
Q 009172 425 EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLS 504 (541)
Q Consensus 425 ~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~ 504 (541)
++. ++. +..|. +.++++++.++........+.+.|...++.+..|.. |. |. ..
T Consensus 297 ~~~-g~~-~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~------~~---~~-~~ 349 (405)
T 2vi8_A 297 QNE-GFT-LVSGG---------------TDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTI------PY---DP-ES 349 (405)
T ss_dssp HHT-TCE-EGGGS---------------CSSSEEEEECGGGTCCHHHHHHHHHHHTEECEEECC------TT---CS-SC
T ss_pred HhC-CCe-EecCC---------------CCceEEEEEccCCCCCHHHHHHHHHHcCceeccCcC------cc---cc-CC
Confidence 876 442 22221 246788999863101223444445445666665432 10 00 00
Q ss_pred HHHHHhcCCCCCeEEEEecC--------CCHHHHHHHHHHHHh
Q 009172 505 QSERLKYGIMDNLVRFSFGV--------EDFEDLKADVLQALH 539 (541)
Q Consensus 505 ~~~~~~~gi~~~~IRlSvG~--------Ed~edli~dL~~AL~ 539 (541)
...++.+|||++. ++.+.+++.|.++++
T Consensus 350 -------~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~ 385 (405)
T 2vi8_A 350 -------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK 385 (405)
T ss_dssp -------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred -------CCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHh
Confidence 0124679999994 455666666666664
No 170
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.87 E-value=1.2e-20 Score=200.07 Aligned_cols=289 Identities=13% Similarity=0.085 Sum_probs=182.8
Q ss_pred CCCCCchhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhc---c----CCCEEEEcCCCCcchHHHHHhhcc---
Q 009172 204 YGRYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALV---P----AGGHIVTTTDCYRKTRIFIETVLP--- 271 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g--~~~~i~~sSG~~Ai~~al~all---~----~GD~VIv~~~~y~~~~~~~~~~l~--- 271 (541)
+++|.++...+++++|+++++ .++++++++|++|+.++++.+. + |||+||+.++.|++..........
T Consensus 80 ~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~ 159 (429)
T 1s0a_A 80 FGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDN 159 (429)
T ss_dssp CSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTT
T ss_pred ccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCch
Confidence 456778888999999999996 3567888888999999987653 2 699999999999874332211111
Q ss_pred ---------cCCcEEEEeC---------CCCHHHHHHhccC--CCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCC
Q 009172 272 ---------KMGITATVID---------PADMEGLEAALNN--NNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKG 326 (541)
Q Consensus 272 ---------~~Gi~v~~vd---------~~dle~Le~ai~~--~~tklV~lesp-~NPtG~v~d----i~~Ia~la~~~g 326 (541)
..++....++ ..|+++|++++++ .++++|+++.+ +||+|.+++ +++|.++|++||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~ 239 (429)
T 1s0a_A 160 SMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREG 239 (429)
T ss_dssp TTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHT
T ss_pred hhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 0133433332 1478899998872 25888888766 799998887 999999999999
Q ss_pred CEEEEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh-----hhcCCCccHHH
Q 009172 327 AIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-----HVLGGALNPNA 395 (541)
Q Consensus 327 illvvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-----~~~g~~~s~~~ 395 (541)
++||+||+|.... .........|++ |++|.++++ -...|++++++++++.+.... .......++..
T Consensus 240 ~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~l~~G-~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~ 316 (429)
T 1s0a_A 240 ILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGKALTGG-TMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLA 316 (429)
T ss_dssp CEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTS-SSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHH
T ss_pred CEEEEeehhhCCcccchHHHhhhcCCCCCEE--EecccccCC-CccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHH
Confidence 9999999986321 112223456766 577999863 124688889998888776421 11112235666
Q ss_pred HHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHH
Q 009172 396 AYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFI 473 (541)
Q Consensus 396 a~l~l~~l~tl~--~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l 473 (541)
+..+...++.+. ...++..++.+++.+.|++... +|++. ...+.|++++|++++. .....+.
T Consensus 317 ~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~~~----------~~~~~g~~~~~~~~~~-~~~~~l~ 380 (429)
T 1s0a_A 317 CAAANASLAILESGDWQQQVADIEVQLREQLAPARD-----AEMVA----------DVRVLGAIGVVETTHP-VNMAALQ 380 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-----CTTEE----------EEEEETTEEEEEESSC-BCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-----CCCEE----------EEEEeeEEEEEEECCc-ccHHHHH
Confidence 555555555432 2345555667777777765310 12110 0122467899999742 1233455
Q ss_pred HHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHh
Q 009172 474 DALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALH 539 (541)
Q Consensus 474 ~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~ 539 (541)
+.|...++.++. ..+.||||++...+++.++.+.++|+
T Consensus 381 ~~l~~~Gi~v~~----------------------------~~~~iRis~~~~~t~e~i~~~~~~l~ 418 (429)
T 1s0a_A 381 KFFVEQGVWIRP----------------------------FGKLIYLMPPYIILPQQLQRLTAAVN 418 (429)
T ss_dssp HHHHHTTEECCC----------------------------BTTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCEEec----------------------------cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 555434544431 02689999876555555555444443
No 171
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.87 E-value=1e-20 Score=198.69 Aligned_cols=213 Identities=11% Similarity=0.097 Sum_probs=142.1
Q ss_pred chhHHHHHHHHHHH--hC-C--CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE-EEEeCC
Q 009172 209 NPTTVVVEEKMSAL--EG-A--ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT-ATVIDP 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l--~g-~--~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~-v~~vd~ 282 (541)
.+...+|+++||++ .| . ++.++++++++++.+++ .++++||+|+++.|+|++.... +...|.+ +..++.
T Consensus 74 ~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~~~~~~~~~ 148 (400)
T 3asa_A 74 DFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLL-SFFGPNQTVAIQDPSYPAYLDI----ARLTGAKEIIALPC 148 (400)
T ss_dssp TTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHH-HHHCSSCEEEEEESCCHHHHHH----HHHTTCSEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHH-HHcCCCCEEEECCCCcHHHHHH----HHHcCCcceEeccc
Confidence 34578999999999 46 3 45666666678988855 5568999999999999986543 3445766 766654
Q ss_pred CCHHHHHHhccC-CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCc-----cccccc----CCc
Q 009172 283 ADMEGLEAALNN-NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSL----GAD 349 (541)
Q Consensus 283 ~dle~Le~ai~~-~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~----gaD 349 (541)
++.+.+...+.. .++++|++++|+||||.++| +++|+++|+++|+++|+|++|..... .....+ +.+
T Consensus 149 ~~~~~~~~~l~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (400)
T 3asa_A 149 LQENAFFPEFPEDTHIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCA 228 (400)
T ss_dssp CGGGTTCCCCCTTCCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTE
T ss_pred chhcCcccChhhccCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCce
Confidence 311111111111 25899999999999999998 55788899999999999999874321 112222 245
Q ss_pred EEEECCccccCCCCCceEEEEEeChHH-------HHHHHHHhh-hcCCCccHHHHHHHHHhHHH--HHHHHHHHHHHHHH
Q 009172 350 LVLHSATKFIGGHNDVLAGSISGSGKL-------VTQIRNLHH-VLGGALNPNAAYLIIRGMKT--LHLRVQQQNSTALR 419 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv~~~~l-------i~~l~~~~~-~~g~~~s~~~a~l~l~~l~t--l~~r~~~~~~na~~ 419 (541)
+++.|+||.+|.+| ...|++++++++ ++.+..... ....+.++.....+...++. +....++..++++.
T Consensus 229 i~~~s~sK~~g~~G-lriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 307 (400)
T 3asa_A 229 IEINSFSKPLGFAG-IRLGWTVIPQELTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDL 307 (400)
T ss_dssp EEEEECCGGGTTTT-CCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred EEEecchhhcCCcc-hheeEEeeChhhccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 89999999998655 346888888877 665543221 11223444444444444443 33344556677888
Q ss_pred HHHHHHhC
Q 009172 420 MAEILEAH 427 (541)
Q Consensus 420 la~~L~~~ 427 (541)
+.+.|++.
T Consensus 308 l~~~L~~~ 315 (400)
T 3asa_A 308 LRKALLAT 315 (400)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHC
Confidence 88888876
No 172
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.87 E-value=1.9e-20 Score=199.90 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=150.9
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCC-cchHHHHHhhcccCCcEEEEeCC----
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCY-RKTRIFIETVLPKMGITATVIDP---- 282 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y-~~~~~~~~~~l~~~Gi~v~~vd~---- 282 (541)
.++...+||++|++++|.+++++++||++|+.+++.+++++|| +++.+.| +.+.. .+...|.++.+++.
T Consensus 73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l~~~gd--i~~~~~~~~~~~~----~~~~~G~~~~~v~~~~~~ 146 (456)
T 2ez2_A 73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQ--YVAGNMYFTTTRY----HQEKNGAVFVDIVRDEAH 146 (456)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHHCCTTC--EEEESSCCHHHHH----HHHHTTCEEEECBCGGGG
T ss_pred cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCC--EeccccccchhHH----HHHHcCCEEEEecccccc
Confidence 4678899999999999999999999999999999999999999 6778888 44332 33456778777643
Q ss_pred -----------CCHHHHHHhccCCC---eeEEEEeCCCC-CCCcccC---HHHHHHHHHhCCCEEEEEcCCCCC------
Q 009172 283 -----------ADMEGLEAALNNNN---VSLFFTESPTN-PFLRCVD---VKLVSDLCHKKGAIVCIDGTFATP------ 338 (541)
Q Consensus 283 -----------~dle~Le~ai~~~~---tklV~lesp~N-PtG~v~d---i~~Ia~la~~~gillvvDea~a~~------ 338 (541)
.|+++|+++++++. +++|++++|+| |||.+.| +++|.++|++||++||+|++|+.+
T Consensus 147 ~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~ 226 (456)
T 2ez2_A 147 DAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK 226 (456)
T ss_dssp CTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccc
Confidence 27899999987531 39999999999 9999987 999999999999999999998652
Q ss_pred -----Ccccc-------cccCCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhc-C----CCccHHH-HHHH
Q 009172 339 -----LNQKA-------LSLGADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL-G----GALNPNA-AYLI 399 (541)
Q Consensus 339 -----~~~~~-------l~~gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~-g----~~~s~~~-a~l~ 399 (541)
+.... .....|+++.|++|+++ .+ ++|++++ ++++++.++...... + ...+... +.++
T Consensus 227 ~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~-~~--~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a 303 (456)
T 2ez2_A 227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCL-VN--IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMA 303 (456)
T ss_dssp HHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTC-CS--SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHHHHHH
T ss_pred ccccccCCcchhhhhhhhcccCCEEEEeCcccCC-CC--ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHHHHHH
Confidence 21111 12246888889888866 33 3799988 678888776544321 1 1112111 1112
Q ss_pred HHhHHHH-HHHHHHHHHHHHHHHHHHHh
Q 009172 400 IRGMKTL-HLRVQQQNSTALRMAEILEA 426 (541)
Q Consensus 400 l~~l~tl-~~r~~~~~~na~~la~~L~~ 426 (541)
...++.+ ....++..++.+.+.+.|++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 331 (456)
T 2ez2_A 304 IGLREAMQYEYIEHRVKQVRYLGDKLKA 331 (456)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 2223333 34455666677778888876
No 173
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.87 E-value=1.3e-20 Score=201.68 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=167.1
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhcc----CCCE---EEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVP----AGGH---IVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~----~GD~---VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
..+...+|+++|++++|.+++++++||++|+.+++.++++ +||+ ||++.+.|..+...+ ...|.++..+
T Consensus 74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~----~~~g~~~~~~ 149 (467)
T 1ax4_A 74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV----ELNGCKAINI 149 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH----HHTTCEEEEC
T ss_pred cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhhccCCCccceEEEeccccchhhHHH----hccCCceecc
Confidence 3567889999999999998899999999999999999988 9999 988844444433222 3345555543
Q ss_pred C---------------CCCHHHHHHhccC---CCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEEcCCCC-
Q 009172 281 D---------------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFAT- 337 (541)
Q Consensus 281 d---------------~~dle~Le~ai~~---~~tklV~lesp~NPt-G~v~d---i~~Ia~la~~~gillvvDea~a~- 337 (541)
+ ..|+++|++++++ .+|++|++++|+||+ |.+++ +++|.++|++||++||+|+++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~ 229 (467)
T 1ax4_A 150 VTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCE 229 (467)
T ss_dssp BCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHH
T ss_pred cccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhh
Confidence 1 1379999999974 149999999999999 78766 67899999999999999998542
Q ss_pred ----------CC-cccccc------cCCcEEEECCccccCCCCCceEEEEEeC-h-HHHHHHHHHhhhcCC-----CccH
Q 009172 338 ----------PL-NQKALS------LGADLVLHSATKFIGGHNDVLAGSISGS-G-KLVTQIRNLHHVLGG-----ALNP 393 (541)
Q Consensus 338 ----------~~-~~~~l~------~gaDivv~S~sK~lgg~g~v~gG~vv~~-~-~li~~l~~~~~~~g~-----~~s~ 393 (541)
.+ ...... ..+|+++.|+||.++.+ +||+++++ + ++++.+......+++ ..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 306 (467)
T 1ax4_A 230 NAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLN---IGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306 (467)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCS---SCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCH
T ss_pred cchhccccccccCCCchhhhhhhhccccceEEEeccccCCCC---cceEEEeCCHHHHHHHHHhhccccccccccCCccc
Confidence 11 111111 24789999999999765 36888887 7 888877654332111 1222
Q ss_pred HHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE-------EcC
Q 009172 394 NAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE-------VDG 464 (541)
Q Consensus 394 ~~a~l~l~~l~tl~--~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~-------l~g 464 (541)
.....+..+++... .++++..++++.+.+.|++ +++. +..|. .|..+++. ++.
T Consensus 307 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~ 368 (467)
T 1ax4_A 307 RDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLRE-AGIP-IQYPT----------------GGHAVFVDCKKLVPQIPG 368 (467)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-TTCC-BCSSC----------------CSSEEEEESTTTCTTSCG
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh-CCCC-cccCC----------------CceEEEEehhhhcccccc
Confidence 21111112333321 2455555777888888887 3332 11121 35567777 431
Q ss_pred CHHHHHHHHHHc-CCCceeecC
Q 009172 465 DLTATIKFIDAL-KIPYIAPSF 485 (541)
Q Consensus 465 ~~~~~~~~l~~L-~~~~iavS~ 485 (541)
.......+.+.| ...++.++.
T Consensus 369 ~~~~~~~l~~~L~~~~gv~v~~ 390 (467)
T 1ax4_A 369 DQFPAQAVINALYLESGVRAVE 390 (467)
T ss_dssp GGCHHHHHHHHHHHHHCEECEE
T ss_pred CCCCHHHHHHHHHHhcCceeee
Confidence 111345666666 555777765
No 174
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.87 E-value=1.3e-20 Score=198.94 Aligned_cols=286 Identities=14% Similarity=0.162 Sum_probs=182.9
Q ss_pred CCCCchhHHHHHHHHHHHh-C-C-CcEEEeCCHHHHHHHHHH---HhccCCCEEEEcCCCCcchHHHHHhhcc-------
Q 009172 205 GRYGNPTTVVVEEKMSALE-G-A-ESTVIMASGMSASTVMLL---ALVPAGGHIVTTTDCYRKTRIFIETVLP------- 271 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~-g-~-~~~i~~sSG~~Ai~~al~---all~~GD~VIv~~~~y~~~~~~~~~~l~------- 271 (541)
.++.++...+|+++|++++ | . ++++++++|++|+.+++. .+.++| +|++.++.|++..........
T Consensus 79 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~ 157 (426)
T 1sff_A 79 QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSA 157 (426)
T ss_dssp TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTT
T ss_pred cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCcccccc
Confidence 4556788999999999999 5 3 456777788899999987 667776 899999999875432212211
Q ss_pred cCCc---EEEEeCCC----------CHHHHHHhccC----CCeeEEEEeC-CCCCCCcccC----HHHHHHHHHhCCCEE
Q 009172 272 KMGI---TATVIDPA----------DMEGLEAALNN----NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV 329 (541)
Q Consensus 272 ~~Gi---~v~~vd~~----------dle~Le~ai~~----~~tklV~les-p~NPtG~v~d----i~~Ia~la~~~gill 329 (541)
.++. .+..++.. |+++|++++++ .++++|++++ ++| ||.+.+ +++|.++|++||++|
T Consensus 158 ~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~l 236 (426)
T 1sff_A 158 GMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIML 236 (426)
T ss_dssp TSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEE
T ss_pred ccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEE
Confidence 1111 14444431 68899988862 2588988854 466 997777 999999999999999
Q ss_pred EEEcCCCCCCc------ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhH
Q 009172 330 CIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGM 403 (541)
Q Consensus 330 vvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l 403 (541)
|+||+|..... .+......|++ |+||.+++ | ...|++++++++++.+...........++..+..+...+
T Consensus 237 i~De~~~~~~~~g~~~~~~~~~~~~di~--s~sK~~~~-G-lriG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~aal 312 (426)
T 1sff_A 237 IADEVQSGAGRTGTLFAMEQMGVAPDLT--TFAKSIAG-G-FPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVL 312 (426)
T ss_dssp EEECTTTTTTTTSSSSGGGGTTSCCSEE--EECGGGGT-S-SCCEEEEEEHHHHTTSCTTSBCCSSSSCHHHHHHHHHHH
T ss_pred EEechhhccCcccchhhhhhcCCCCCEE--EEcccccC-C-CceEEEEEcHHHHhhhccCCcCcCCCCCHHHHHHHHHHH
Confidence 99999874211 11222235655 78899997 5 456889998888776653222222334666666666566
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC-------CHHHHH
Q 009172 404 KTLHL--RVQQQNSTALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG-------DLTATI 470 (541)
Q Consensus 404 ~tl~~--r~~~~~~na~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g-------~~~~~~ 470 (541)
+.+.. ..++..++.+.+.+.|++. +.+.. ..+.|++++|++.+ ......
T Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~ 374 (426)
T 1sff_A 313 KVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGD------------------VRGLGAMIAIELFEDGDHNKPDAKLTA 374 (426)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHTCTTEEE------------------EEEETTEEEEEEBGGGCTTSBCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEE------------------EEEEEEEEEEEEecCccccCCChHHHH
Confidence 54432 3445556667777766542 22111 12247899999952 123455
Q ss_pred HHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHh
Q 009172 471 KFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALH 539 (541)
Q Consensus 471 ~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed----~edli~dL~~AL~ 539 (541)
.+.+.|...++.+..|+. .++.|||+++... .+.+++.|.++++
T Consensus 375 ~l~~~l~~~gi~v~~~~~-------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~ 422 (426)
T 1sff_A 375 EIVARARDKGLILLSCGP-------------------------YYNVLRILVPLTIEDAQIRQGLEIISQCFD 422 (426)
T ss_dssp HHHHHHHHTTEECEEEST-------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEecCCC-------------------------CCCEEEEECCccCCHHHHHHHHHHHHHHHH
Confidence 666666555665554321 1478999997543 4445555555544
No 175
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.86 E-value=2.7e-20 Score=200.77 Aligned_cols=211 Identities=18% Similarity=0.168 Sum_probs=154.0
Q ss_pred hHHHHHHHHHHHhCCCcEEEe-CCHHHHHHHHHHHh----ccCCC-----EEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 211 TTVVVEEKMSALEGAESTVIM-ASGMSASTVMLLAL----VPAGG-----HIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~~~~i~~-sSG~~Ai~~al~al----l~~GD-----~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
..+++++.+++++|.+..+++ ++|++|+.++++++ .++|| +|+++.+.|+.+... +...|++++.+
T Consensus 108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~----~~~~G~~vv~v 183 (474)
T 1wyu_B 108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGSNPAT----ASMAGYQVREI 183 (474)
T ss_dssp HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTHHHHH----HHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChhhHHH----HHHCCCEEEEe
Confidence 467889999999998766544 67778888766554 46888 999999999876643 44568898888
Q ss_pred CCC-----CHHHHHHhccCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEEcCCCCCC--cccccccCCcEEE
Q 009172 281 DPA-----DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATPL--NQKALSLGADLVL 352 (541)
Q Consensus 281 d~~-----dle~Le~ai~~~~tklV~lesp~NPtG~v-~di~~Ia~la~~~gillvvDea~a~~~--~~~~l~~gaDivv 352 (541)
+.+ |+++|++++++ +|++|++++| ||+|.+ .|+++|+++|+++|+++|+|+++..+. ..++..+|+|+++
T Consensus 184 ~~~~~~~~d~~~L~~~i~~-~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~ 261 (474)
T 1wyu_B 184 PSGPEGEVDLEALKRELGP-HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVH 261 (474)
T ss_dssp CBCTTSSBCHHHHHHHCST-TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEE
T ss_pred cCCCCCCcCHHHHHHhhCC-CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEE
Confidence 754 89999999987 4999999998 589998 699999999999999999999986443 2345566899999
Q ss_pred ECCccccCCC---CCceEEEEEeChHHHHHHHH-Hh------------------hhcCCCccHHHHHHHHHh-----HHH
Q 009172 353 HSATKFIGGH---NDVLAGSISGSGKLVTQIRN-LH------------------HVLGGALNPNAAYLIIRG-----MKT 405 (541)
Q Consensus 353 ~S~sK~lgg~---g~v~gG~vv~~~~li~~l~~-~~------------------~~~g~~~s~~~a~l~l~~-----l~t 405 (541)
.|+||+++++ |+..+|++++++++++.+.. .. .......+...+..+... .+.
T Consensus 262 ~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~ 341 (474)
T 1wyu_B 262 LNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEG 341 (474)
T ss_dssp CCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999854 22346889998887765541 00 000111233332222222 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 009172 406 LHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 406 l~~r~~~~~~na~~la~~L~~~ 427 (541)
+....++..++++++.+.|++.
T Consensus 342 l~~~~~~~~~~~~~l~~~L~~~ 363 (474)
T 1wyu_B 342 LKKAAALAVLNARYLKELLKEK 363 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5555667778889999999875
No 176
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=99.86 E-value=3.8e-21 Score=208.13 Aligned_cols=210 Identities=16% Similarity=0.109 Sum_probs=145.9
Q ss_pred HHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHh----hcccCC--cEEEEe--
Q 009172 214 VVEEKMSALEGAE-----STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET----VLPKMG--ITATVI-- 280 (541)
Q Consensus 214 ~Le~~LA~l~g~~-----~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~----~l~~~G--i~v~~v-- 280 (541)
.+++++++++|.+ ..|+++||++|+.+++.++++|||+|+++++.|+++...... .....| +.+..+
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~ 173 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKV 173 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECB
T ss_pred HHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECcc
Confidence 3448999999985 248999999988888999999999999999999886422100 011112 444444
Q ss_pred C----CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-----cccccccCCcEE
Q 009172 281 D----PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLV 351 (541)
Q Consensus 281 d----~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-----~~~~l~~gaDiv 351 (541)
+ ..|+++|++++++.+||+|++ +++|++ .+.|+++|.++|+++|++||+|+++..+. ...++. ++|++
T Consensus 174 ~~~~~~iD~d~le~~i~~~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~-~~div 250 (483)
T 1rv3_A 174 NPDTGYIDYDRLEENARLFHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFE-HCHVV 250 (483)
T ss_dssp CTTTCSBCHHHHHHHHHHHCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGG-TCSEE
T ss_pred ccCCCcCCHHHHHHHHhhcCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCC-CCcEE
Confidence 3 148999999998225999999 999999 99999999999999999999999976322 122333 68999
Q ss_pred EECCccccCCCCCceEEEEEeChH---------------HHHHHHHHh-hhcCCCccHHHHH---HHHHhH--HHHHHHH
Q 009172 352 LHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLH-HVLGGALNPNAAY---LIIRGM--KTLHLRV 410 (541)
Q Consensus 352 v~S~sK~lgg~g~v~gG~vv~~~~---------------li~~l~~~~-~~~g~~~s~~~a~---l~l~~l--~tl~~r~ 410 (541)
+.|+||+++|+. +|+++++++ +.+.+.... ....++....... .++..+ ..+....
T Consensus 251 ~~s~~K~l~Gpr---gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~ 327 (483)
T 1rv3_A 251 TTTTHKTLRGCR---AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQ 327 (483)
T ss_dssp EEESSGGGCCCS---CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred EecCcccCCCCC---ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence 999999997664 588888764 334443321 1111222222111 122222 2345667
Q ss_pred HHHHHHHHHHHHHHHhCCCc
Q 009172 411 QQQNSTALRMAEILEAHPKV 430 (541)
Q Consensus 411 ~~~~~na~~la~~L~~~p~v 430 (541)
++..++++.+.+.|.++ ++
T Consensus 328 ~~~~~~~~~l~~~L~~~-g~ 346 (483)
T 1rv3_A 328 RQVVANCRALSAALVEL-GY 346 (483)
T ss_dssp HHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHhc-CC
Confidence 77888999999999886 44
No 177
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.86 E-value=3.2e-20 Score=195.16 Aligned_cols=249 Identities=17% Similarity=0.157 Sum_probs=155.3
Q ss_pred HHHHHHHHHhCCCcE-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHh-hcccCCcEEEEeCCC------CH
Q 009172 214 VVEEKMSALEGAEST-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVIDPA------DM 285 (541)
Q Consensus 214 ~Le~~LA~l~g~~~~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~-~l~~~Gi~v~~vd~~------dl 285 (541)
..++.+++++|.+.. ++++||++|+..++.+++++||+|+++.++|++....... .....++.+..++.. |+
T Consensus 82 ~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~ 161 (425)
T 3ecd_A 82 LAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDY 161 (425)
T ss_dssp HHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCH
T ss_pred HHHHHHHHHhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCH
Confidence 345889999998876 4589999999999999999999999999999873211111 122223455555433 89
Q ss_pred HHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCc-----ccccccCCcEEEECCccccC
Q 009172 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLN-----QKALSLGADLVLHSATKFIG 360 (541)
Q Consensus 286 e~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~-----~~~l~~gaDivv~S~sK~lg 360 (541)
++|++++++.++++|++++|+|| ...++++|.++|++||++||+|+++..+.. ..+.. .+|+++.|+||+++
T Consensus 162 ~~l~~~i~~~~~~~v~~~~~~~~--~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~ 238 (425)
T 3ecd_A 162 DQVEALAQQHKPSLIIAGFSAYP--RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLR 238 (425)
T ss_dssp HHHHHHHHHHCCSEEEEECSCCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGC
T ss_pred HHHHHHHhhcCCcEEEEccccCC--CcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccC
Confidence 99999997335899999999985 577899999999999999999999543221 22233 37999999999996
Q ss_pred CCCCceEEEEEeC-hHHHHHHHHHhhh--cCCCccHHHHHH--HH-HhH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Q 009172 361 GHNDVLAGSISGS-GKLVTQIRNLHHV--LGGALNPNAAYL--II-RGM-KTLHLRVQQQNSTALRMAEILEAHPKVKRV 433 (541)
Q Consensus 361 g~g~v~gG~vv~~-~~li~~l~~~~~~--~g~~~s~~~a~l--~l-~~l-~tl~~r~~~~~~na~~la~~L~~~p~v~~V 433 (541)
|+ .+|+++++ +++.+.+...... .+....+..+.+ ++ ..+ +.+....++..++++.+.+.|.+. ++. +
T Consensus 239 g~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~-~ 313 (425)
T 3ecd_A 239 GP---RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG-GVD-L 313 (425)
T ss_dssp CC---SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-E
T ss_pred CC---CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC-CCe-e
Confidence 65 36888887 4666666654322 112222222211 11 111 334455667778888888888873 232 2
Q ss_pred eCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecC
Q 009172 434 HYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSF 485 (541)
Q Consensus 434 ~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~ 485 (541)
..|. +.++++++.++........+.+.|...++.+..
T Consensus 314 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~ 350 (425)
T 3ecd_A 314 VTGG---------------TDNHLLLVDLRPKGLKGAQVEQALERAGITCNK 350 (425)
T ss_dssp GGGS---------------CSSSEEEEECGGGTCCHHHHHHHHHHTTEECEE
T ss_pred ccCC---------------CCceEEEEEeCCCCCCHHHHHHHHHHcCCEecc
Confidence 2111 246688888863111223344444444666653
No 178
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=2.6e-20 Score=197.27 Aligned_cols=283 Identities=12% Similarity=0.018 Sum_probs=181.0
Q ss_pred CCCCchhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhcc-CCCEEEEcCCCCcchHHHHHhhc----------
Q 009172 205 GRYGNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVP-AGGHIVTTTDCYRKTRIFIETVL---------- 270 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~-~GD~VIv~~~~y~~~~~~~~~~l---------- 270 (541)
.+|.++...+++++|++++|.+ +++++++|++|+.++++.+.. +||+||+.++.|++.........
T Consensus 81 ~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~ 160 (419)
T 2eo5_A 81 NDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIV 160 (419)
T ss_dssp SCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSS
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCcccccccc
Confidence 4678888999999999999863 567777788999999986543 49999999999987443221111
Q ss_pred ccCCcEEEEeCCC---------------------CHHHHH-HhccC----CCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009172 271 PKMGITATVIDPA---------------------DMEGLE-AALNN----NNVSLFFTESPTNPFLRCVD----VKLVSD 320 (541)
Q Consensus 271 ~~~Gi~v~~vd~~---------------------dle~Le-~ai~~----~~tklV~lesp~NPtG~v~d----i~~Ia~ 320 (541)
......+..++.. |+++|+ +++++ +++++|+++..+||+|.+++ +++|.+
T Consensus 161 ~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~ 240 (419)
T 2eo5_A 161 GPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240 (419)
T ss_dssp CCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHH
T ss_pred CCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHH
Confidence 0111234444432 367888 88863 24778887655678898776 999999
Q ss_pred HHHhCCCEEEEEcCCCCCC-c-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHH
Q 009172 321 LCHKKGAIVCIDGTFATPL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394 (541)
Q Consensus 321 la~~~gillvvDea~a~~~-~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~ 394 (541)
+|++||++||+||+|.... . ........|++ |++|.+++ |-...|+++++++++ .+ ..........++.
T Consensus 241 l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~-G~~riG~~~~~~~~~-~~-~~~~~~t~~~n~~ 315 (419)
T 2eo5_A 241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVI--TLAKALGG-GIMPIGATIFRKDLD-FK-PGMHSNTFGGNAL 315 (419)
T ss_dssp HHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TTSCCEEEEEEGGGC-CC-------CCCCCHH
T ss_pred HHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEE--EecccccC-CccceEEEEEchHhh-cC-CcccCCCCCCCHH
Confidence 9999999999999986421 1 12223345665 68899986 313467888888776 55 2111222334666
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHH
Q 009172 395 AAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFID 474 (541)
Q Consensus 395 ~a~l~l~~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~ 474 (541)
.+..+...++.+....++..++.+++.+.|++. +..+ ++.|++++|++..+..... +.+
T Consensus 316 ~~~aa~aal~~~~~~~~~~~~~~~~l~~~L~~~--~~~~------------------~~~g~~~~i~~~~~~~~~~-~~~ 374 (419)
T 2eo5_A 316 ACAIGSKVIDIVKDLLPHVNEIGKIFAEELQGL--ADDV------------------RGIGLAWGLEYNEKKVRDR-IIG 374 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--SSEE------------------EEETTEEEEECSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhe------------------EeeeEEEEEEEecCccHHH-HHH
Confidence 666666666665544555667777777777653 1111 2357899999842222344 666
Q ss_pred HcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHhh
Q 009172 475 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALHA 540 (541)
Q Consensus 475 ~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~~ 540 (541)
.|...++.++.+ .++.|||+++.. +.+.+++.|.+++++
T Consensus 375 ~l~~~Gv~v~~~---------------------------~~~~lRis~~~~~t~e~i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 375 ESFKRGLLLLPA---------------------------GRSAIRVIPPLVISEEEAKQGLDILKKVIKV 417 (419)
T ss_dssp HHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 665445544421 146899987754 445555555555543
No 179
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.86 E-value=3.5e-20 Score=193.53 Aligned_cols=213 Identities=12% Similarity=0.051 Sum_probs=145.1
Q ss_pred hhHHHHHHHHHHHhCC--------C--cEEEeCCHHHHHHHHH--HHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 210 PTTVVVEEKMSALEGA--------E--STVIMASGMSASTVML--LALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~--------~--~~i~~sSG~~Ai~~al--~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
+...+++++++++++. + +.+++++|++|+.+++ .+++++||+|+++.|+|.+... .++..|.++
T Consensus 70 ~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~----~~~~~g~~~ 145 (397)
T 3fsl_A 70 EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVA----IFAGAGFEV 145 (397)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHH----HHHHTTCCE
T ss_pred CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHH----HHHHcCCce
Confidence 4456788888887642 3 4456666679999984 5668999999999999998653 344568888
Q ss_pred EEeCC----C---CHHHHHHhccC--CCeeEEEEeCCCCCCCcccCH---HHHHHHHHhCCCEEEEEcCCCCCCcc----
Q 009172 278 TVIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVDV---KLVSDLCHKKGAIVCIDGTFATPLNQ---- 341 (541)
Q Consensus 278 ~~vd~----~---dle~Le~ai~~--~~tklV~lesp~NPtG~v~di---~~Ia~la~~~gillvvDea~a~~~~~---- 341 (541)
..++. . |++++++++++ .++++|++++|+||||.+++. ++|+++|+++|+++|+|++|......
T Consensus 146 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~ 225 (397)
T 3fsl_A 146 STYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEED 225 (397)
T ss_dssp EEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGG
T ss_pred EEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccc
Confidence 88775 3 79999999973 258999999999999999764 48889999999999999998765422
Q ss_pred -cc-----cccCCcEEEECCccccCCCCCceEEEEEe---ChHHHHHHHHH-h---hhcCCCccHHHHHHHHHh------
Q 009172 342 -KA-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIRNL-H---HVLGGALNPNAAYLIIRG------ 402 (541)
Q Consensus 342 -~~-----l~~gaDivv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~~~-~---~~~g~~~s~~~a~l~l~~------ 402 (541)
.. ...+.++++.|+||.++.+|. ..|+++. ++++++++... . .......+...+..+...
T Consensus 226 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 304 (397)
T 3fsl_A 226 AYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEAL 304 (397)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHH
T ss_pred cHHHHHHHhcCCCEEEEecccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHH
Confidence 11 123456899999999986553 3566653 45666544322 1 111122222222222211
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhC
Q 009172 403 ----MKTLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 403 ----l~tl~~r~~~~~~na~~la~~L~~~ 427 (541)
.+.+....++..++++.+.+.|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 333 (397)
T 3fsl_A 305 KASWLKEVEEMRTRILAMRQELVKVLSTE 333 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2234445566677788888888875
No 180
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.85 E-value=7.1e-20 Score=195.39 Aligned_cols=289 Identities=15% Similarity=0.177 Sum_probs=184.0
Q ss_pred CCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHhhcc----
Q 009172 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETVLP---- 271 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~--------~GD~VIv~~~~y~~~~~~~~~~l~---- 271 (541)
++..+...+++++|+++++. +.+++++||++|+.+++..+.. +||+||+.++.|++..........
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~ 168 (449)
T 3a8u_X 89 QYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGN 168 (449)
T ss_dssp SCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhh
Confidence 56788899999999999964 5678888899999999987754 689999999999875321111111
Q ss_pred -------cCCcEEEEeCC--------CC--------HHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHHHHHH
Q 009172 272 -------KMGITATVIDP--------AD--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDL 321 (541)
Q Consensus 272 -------~~Gi~v~~vd~--------~d--------le~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~Ia~l 321 (541)
..++....++. .| +++|++++++ .++++|+++..+|++|.+++ +++|.++
T Consensus 169 ~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l 248 (449)
T 3a8u_X 169 RKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREI 248 (449)
T ss_dssp HTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHH
T ss_pred ccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHH
Confidence 01333332221 15 8999998862 24888888766688999888 9999999
Q ss_pred HHhCCCEEEEEcCCCCC-Cc-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-------hcC
Q 009172 322 CHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-------VLG 388 (541)
Q Consensus 322 a~~~gillvvDea~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-------~~g 388 (541)
|++||++||+||++... .. ........|++ |++|.+++ |....|++++++++++.+..... ..+
T Consensus 249 ~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~-G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (449)
T 3a8u_X 249 CNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTN-GAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG 325 (449)
T ss_dssp HHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCC
T ss_pred HHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccC-CCCceEEEEECHHHHHHhhccCccccccccccc
Confidence 99999999999998532 11 11222345766 67899986 31235777788888887765311 112
Q ss_pred --CCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 389 --GALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 389 --~~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
...++..+..+...++.+.. ..++..++.+.+.+.|++.+.+ |.. ...++.|.+++|++++
T Consensus 326 ~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~-----~~~----------~~~~~~g~~~~i~~~~ 390 (449)
T 3a8u_X 326 YTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGA-----KNV----------IDIRNFGLAGAIQIAP 390 (449)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTTS-----TTE----------EEEEEETTEEEEEECC
T ss_pred CCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcC-----CCe----------EEEeeeEEEEEEEEec
Confidence 23466666666666665432 3455666777777777653211 110 0012357899999974
Q ss_pred CH--H--HHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHH
Q 009172 465 DL--T--ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQ 536 (541)
Q Consensus 465 ~~--~--~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~ 536 (541)
.. . ....+.+.|...++.+..| .+.|||++... +.+.+++.|.+
T Consensus 391 ~~~~~~~~~~~~~~~l~~~Gv~v~~~----------------------------g~~iRis~~~~~t~~~i~~~l~~l~~ 442 (449)
T 3a8u_X 391 RDGDAIVRPFEAGMALWKAGFYVRFG----------------------------GDTLQFGPTFNSKPQDLDRLFDAVGE 442 (449)
T ss_dssp BTTBSSHHHHHHHHHHHHHTEECEEE----------------------------TTEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CcccccccHHHHHHHHHHCCcEEecC----------------------------CCEEEEECCCcCCHHHHHHHHHHHHH
Confidence 31 1 1223555554335443321 16799997643 44555555555
Q ss_pred HHhh
Q 009172 537 ALHA 540 (541)
Q Consensus 537 AL~~ 540 (541)
++++
T Consensus 443 ~l~~ 446 (449)
T 3a8u_X 443 VLNK 446 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 181
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.85 E-value=3.1e-20 Score=193.86 Aligned_cols=215 Identities=13% Similarity=0.094 Sum_probs=147.9
Q ss_pred CchhHHHHHHHHHHHh---C-----CCcEEE--eCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 208 GNPTTVVVEEKMSALE---G-----AESTVI--MASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~---g-----~~~~i~--~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
..+...+|+++|++++ + .++.++ +++|++|+.+++..+ +.+||+|+++.|+|++.... +...|.
T Consensus 67 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~----~~~~g~ 142 (396)
T 2q7w_A 67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSV----FNSAGL 142 (396)
T ss_dssp CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHH----HHHTTC
T ss_pred CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHH----HHHcCC
Confidence 3455788999999987 2 235555 777779999988765 46999999999999986543 344678
Q ss_pred EEEEeCC---C----CHHHHHHhccCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc--
Q 009172 276 TATVIDP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (541)
Q Consensus 276 ~v~~vd~---~----dle~Le~ai~~~--~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~-- 341 (541)
++..++. . |++++++++++. +++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 143 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~ 222 (396)
T 2q7w_A 143 EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLE 222 (396)
T ss_dssp EEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHH
T ss_pred ceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcc
Confidence 8777765 3 799999998742 3788999999999999987 557899999999999999998764321
Q ss_pred -c--c---c-cc-CCcEEEECCccccCCCCCceEEEEEe---ChH----HHHHHHHHhhhcCCCccHHHHHHHHHhHH--
Q 009172 342 -K--A---L-SL-GADLVLHSATKFIGGHNDVLAGSISG---SGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK-- 404 (541)
Q Consensus 342 -~--~---l-~~-gaDivv~S~sK~lgg~g~v~gG~vv~---~~~----li~~l~~~~~~~g~~~s~~~a~l~l~~l~-- 404 (541)
. + + .. ..++++.|+||.++.+|. ..|++++ +++ +++.+...........++..++++...++
T Consensus 223 ~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 301 (396)
T 2q7w_A 223 EDAEGLRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSND 301 (396)
T ss_dssp HHTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSH
T ss_pred chhHHHHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhcCh
Confidence 1 1 1 11 356889999999986653 3577775 553 44444433222222335555554444443
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 405 --------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 405 --------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
.+....++..++++.+.+.|+++
T Consensus 302 ~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 332 (396)
T 2q7w_A 302 ALRAIWEQELTDMRQRIQRMRQLFVNTLQEK 332 (396)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22233344556777788888775
No 182
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.85 E-value=4.1e-20 Score=194.53 Aligned_cols=214 Identities=11% Similarity=0.087 Sum_probs=146.4
Q ss_pred chhHHHHHHHHHHHh-C-------CCcEEE--eCCHHHHHHHH--HHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE
Q 009172 209 NPTTVVVEEKMSALE-G-------AESTVI--MASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT 276 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~-g-------~~~~i~--~sSG~~Ai~~a--l~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~ 276 (541)
.+...+|++++++++ + .++.++ +++|++|+.++ +..++.+||+|+++.|+|++.... ++..|.+
T Consensus 72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~----~~~~g~~ 147 (412)
T 1yaa_A 72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAI----FENQGLK 147 (412)
T ss_dssp TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHH----HHTTTCC
T ss_pred CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHH----HHHcCce
Confidence 345678999999887 3 245666 77778999887 345567999999999999986543 3445777
Q ss_pred EEEeCC-------CCHHHHHHhccCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc---
Q 009172 277 ATVIDP-------ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (541)
Q Consensus 277 v~~vd~-------~dle~Le~ai~~~--~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~--- 341 (541)
+..++. .|+++|+++++++ +++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 148 ~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~ 227 (412)
T 1yaa_A 148 TATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLD 227 (412)
T ss_dssp EEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHH
T ss_pred EEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccc
Confidence 776654 2789999988653 2456666999999999987 557888999999999999998654221
Q ss_pred -c--cc----ccC----CcEEEECCccccCCCCCceEEEEE--e-----ChH----HHHHHHHHhhhcCCCccHHHHHHH
Q 009172 342 -K--AL----SLG----ADLVLHSATKFIGGHNDVLAGSIS--G-----SGK----LVTQIRNLHHVLGGALNPNAAYLI 399 (541)
Q Consensus 342 -~--~l----~~g----aDivv~S~sK~lgg~g~v~gG~vv--~-----~~~----li~~l~~~~~~~g~~~s~~~a~l~ 399 (541)
. +. ..+ .++++.|+||.++++|. ..|+++ + +++ +++.+...........+....+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~ 306 (412)
T 1yaa_A 228 KDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIV 306 (412)
T ss_dssp HHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred chhHHHHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHH
Confidence 1 11 123 46889999999997663 367776 6 555 666666643332333344444444
Q ss_pred HHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 400 IRGMK----------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 400 l~~l~----------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
...++ .+....++..++++.+.+.|+++
T Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (412)
T 1yaa_A 307 AKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKL 344 (412)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44443 23334455556777788888764
No 183
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.85 E-value=3.3e-20 Score=194.74 Aligned_cols=285 Identities=11% Similarity=0.009 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHHhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCH
Q 009172 210 PTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADM 285 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~---~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dl 285 (541)
+..+++++++++++|.+ +.++ +++|++|+.+++.+++++| .+++....|+.......... ..|.++++++.++-
T Consensus 78 ~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~~~g-v~~v~~~~~~~~~~~~~~~~-~~g~~~~~v~~~~g 155 (398)
T 2fyf_A 78 NLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKR-SLHLTYGEFSAKFASAVSKN-PFVGEPIIITSDPG 155 (398)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTCSSC-EEEEECSHHHHHHHHHHHHC-TTSCCCEEEECCTT
T ss_pred HHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhcCCC-eEEEeCCHHHHHHHHHHHHh-CCCCceEEEecCCC
Confidence 35788999999999975 3455 6778899999999999887 23334444432111111111 12555555543210
Q ss_pred HHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEECCccccCCCCCc
Q 009172 286 EGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDV 365 (541)
Q Consensus 286 e~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~S~sK~lgg~g~v 365 (541)
......+++ +|++|++++|+||||.+.|+++|.++ +|+++|+|++++.+....... ++|+++.|+||+++++++
T Consensus 156 ~~~~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-~~di~~~s~sK~~~~~gg- 229 (398)
T 2fyf_A 156 SAPEPQTDP-SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-ETDAYYFAPQKNFASDGG- 229 (398)
T ss_dssp CCCCCCCCT-TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-GCSEEEECTTSTTCSCSS-
T ss_pred CCCCccccC-CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-cCcEEEEecCcccCCCCc-
Confidence 000112555 59999999999999999999998887 899999999987653221122 489999999999998852
Q ss_pred eEEEEEeChHHHHHHHHHh---------------------hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009172 366 LAGSISGSGKLVTQIRNLH---------------------HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (541)
Q Consensus 366 ~gG~vv~~~~li~~l~~~~---------------------~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na~ 418 (541)
.|+++.+++++++++... .....+.+....+.+...++. +....++..++++
T Consensus 230 -~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~ 308 (398)
T 2fyf_A 230 -LWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQ 308 (398)
T ss_dssp -EEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred -eEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 588889998888775321 001123333333333334432 4445666778888
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCccc
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIM 498 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~ 498 (541)
++.+.|++.|++. +..+. |.. ..+.+++|.++.+ .....+.+.|...++.+..|.
T Consensus 309 ~l~~~L~~~~g~~-~~~~~----~~~--------~~~~~~~~~~~~~-~~~~~l~~~L~~~gI~v~~g~----------- 363 (398)
T 2fyf_A 309 RLYSWAQERPYTT-PFVTD----PGL--------RSQVVGTIDFVDD-VDAGTVAKILRANGIVDTEPY----------- 363 (398)
T ss_dssp HHHHHHHHSTTEE-ESCCS----GGG--------BCSSEEEEEECTT-SCHHHHHHHHHHTTCBCCSCC-----------
T ss_pred HHHHHHHHcCCce-eccCC----hhh--------cCCcEEEEECCCC-CCHHHHHHHHHHCCcEEecCc-----------
Confidence 9999998876653 22111 110 1234899999632 123455555544466555431
Q ss_pred ccccCCHHHHHhcCCCCCeEEEEecCCC----HHHHHHHHHHHHhh
Q 009172 499 SYWDLSQSERLKYGIMDNLVRFSFGVED----FEDLKADVLQALHA 540 (541)
Q Consensus 499 ~~~~~~~~~~~~~gi~~~~IRlSvG~Ed----~edli~dL~~AL~~ 540 (541)
. ...++.||||++... .+.+++.|++++++
T Consensus 364 --~----------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 364 --R----------KLGRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp --T----------TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred --c----------cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 0 012578999999644 44445555555443
No 184
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=99.85 E-value=2.4e-20 Score=199.54 Aligned_cols=209 Identities=20% Similarity=0.172 Sum_probs=149.0
Q ss_pred HHHH-HHHHHHhCCCcEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHh-hcccCCcEEEEeC------CC
Q 009172 213 VVVE-EKMSALEGAESTVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIET-VLPKMGITATVID------PA 283 (541)
Q Consensus 213 ~~Le-~~LA~l~g~~~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~-~l~~~Gi~v~~vd------~~ 283 (541)
+++. +++++++|.+...+ ++||++|+..++.+++++||+|++++++|++....... .+...+..+..++ ..
T Consensus 93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 172 (447)
T 3h7f_A 93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLI 172 (447)
T ss_dssp HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSC
T ss_pred HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCc
Confidence 3344 99999999987766 89999999999999999999999999998773211000 0111233444443 24
Q ss_pred CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-----cccccccCCcEEEECCccc
Q 009172 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKALSLGADLVLHSATKF 358 (541)
Q Consensus 284 dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-----~~~~l~~gaDivv~S~sK~ 358 (541)
|+++|+++++..++++|++++|+||++. ++++|.++|+++|++||+|+++..++ ...+. .++|+++.|+||+
T Consensus 173 d~~~l~~~i~~~~~~~i~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~ 249 (447)
T 3h7f_A 173 DMDAVRATALEFRPKVIIAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKT 249 (447)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGG
T ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcC
Confidence 8999999985435899999999998876 99999999999999999999965421 22233 3579999999999
Q ss_pred cCCCCCceEEEEEeChHHHHHHHHHhhh--cCCCccHHHHH--HHHHh-H-HHHHHHHHHHHHHHHHHHHHHHhC
Q 009172 359 IGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAY--LIIRG-M-KTLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 359 lgg~g~v~gG~vv~~~~li~~l~~~~~~--~g~~~s~~~a~--l~l~~-l-~tl~~r~~~~~~na~~la~~L~~~ 427 (541)
++|+ .+|++++++++++.+...... .++...+..+. .++.. . +.+..+.++..++++++.+.|++.
T Consensus 250 l~G~---~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 321 (447)
T 3h7f_A 250 LGGG---RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAP 321 (447)
T ss_dssp GCCC---SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSH
T ss_pred CCCC---CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9865 379999999888888765332 23333222222 11211 1 245566777888899999988764
No 185
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=99.85 E-value=1.4e-20 Score=203.76 Aligned_cols=291 Identities=15% Similarity=0.120 Sum_probs=171.2
Q ss_pred CchhHHHHH----HHHHHHhCCCc----E-EEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHH---H-hhcccCC
Q 009172 208 GNPTTVVVE----EKMSALEGAES----T-VIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFI---E-TVLPKMG 274 (541)
Q Consensus 208 ~~p~~~~Le----~~LA~l~g~~~----~-i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~---~-~~l~~~G 274 (541)
+++..++|| +++++++|.+. + ++++||++|+.+++.++++|||+|++.++.|++..... . ......|
T Consensus 94 G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g 173 (490)
T 2a7v_A 94 GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATS 173 (490)
T ss_dssp ----CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcC
Confidence 456666776 99999999875 3 45569999999999999999999999999997643110 0 0111223
Q ss_pred c--EEEEeC------CCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCC-----CCcc
Q 009172 275 I--TATVID------PADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFAT-----PLNQ 341 (541)
Q Consensus 275 i--~v~~vd------~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~-----~~~~ 341 (541)
. .+..++ ..|+++|+++++++++|+|+++.++|| .+.|+++|.++|+++|++|++|+++.. +...
T Consensus 174 ~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~ 251 (490)
T 2a7v_A 174 IFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIP 251 (490)
T ss_dssp -------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC
T ss_pred CeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCC
Confidence 2 233332 248999999986435899999888876 467999999999999999999999643 2223
Q ss_pred cccccCCcEEEECCccccCCCCCceEEEEEeChH---------------HHHHHHHHhhh-cCCCccHH-HHHH--HHHh
Q 009172 342 KALSLGADLVLHSATKFIGGHNDVLAGSISGSGK---------------LVTQIRNLHHV-LGGALNPN-AAYL--IIRG 402 (541)
Q Consensus 342 ~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~---------------li~~l~~~~~~-~g~~~s~~-~a~l--~l~~ 402 (541)
.++. ++|+++.|+||+++|+. ||+++++++ +.++++..... ..+.+... .+.+ ++..
T Consensus 252 ~~~~-~aDiv~~S~hK~l~Gp~---GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~ 327 (490)
T 2a7v_A 252 SPFK-HADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ 327 (490)
T ss_dssp CGGG-TCSEEEEESSGGGCSCS---CEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHH
T ss_pred CCCC-CCCEEEECCcccCcccc---chheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence 4444 79999999999998764 688887653 45666654321 11122222 2221 1111
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCc
Q 009172 403 M--KTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPY 480 (541)
Q Consensus 403 l--~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ 480 (541)
+ +.+..+.++..+|++++++.|.+. ++. +..++. ...++++.+.........+.+.|+..+
T Consensus 328 ~~~~~~~~~~~~~~~na~~L~~~L~~~-G~~-v~~~~t---------------~t~lv~vdl~~~g~~~~~~~~~L~~~G 390 (490)
T 2a7v_A 328 ACTPMFREYSLQVLKNARAMADALLER-GYS-LVSGGT---------------DNHLVLVDLRPKGLDGARAERVLELVS 390 (490)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHT-TCE-EGGGSC---------------SSSEEEEECTTTTCCHHHHHHHHHHTT
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHc-CcE-EecCCC---------------CCeEEEEEeCCCCCCHHHHHHHHHhCC
Confidence 1 234566778889999999999885 332 221111 135788887531111233334444456
Q ss_pred eeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEe------c--CCCHHHHHHHHHHHHh
Q 009172 481 IAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSF------G--VEDFEDLKADVLQALH 539 (541)
Q Consensus 481 iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSv------G--~Ed~edli~dL~~AL~ 539 (541)
|.++.+.. |... + ...++.|||+. | .+|.+.+++.|.++|.
T Consensus 391 I~v~~~~~------p~d~-----~-------p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~ 439 (490)
T 2a7v_A 391 ITANKNTC------PGDR-----S-------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN 439 (490)
T ss_dssp EECEEECC------TTCC-----C-------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eEEecCcc------CCCC-----C-------CCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence 77664321 1100 0 01246799965 2 2456666666666654
No 186
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.85 E-value=4e-20 Score=194.60 Aligned_cols=214 Identities=17% Similarity=0.166 Sum_probs=147.5
Q ss_pred chhHHHHHHHHHHHh-CCC-------cE--EEeCCHHHHHHHH---HHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 209 NPTTVVVEEKMSALE-GAE-------ST--VIMASGMSASTVM---LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~-g~~-------~~--i~~sSG~~Ai~~a---l~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
.+...+|++++++++ |.. +. +.+.+|++++.++ +.+++++||+|+++.|+|.+.... ++..|.
T Consensus 78 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~----~~~~g~ 153 (409)
T 4eu1_A 78 VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESI----FAKAGM 153 (409)
T ss_dssp TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHH----HHHTTC
T ss_pred CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHH----HHHcCC
Confidence 445678999999976 432 23 3466777777664 445678999999999999986543 445688
Q ss_pred EEEEeCC-------CCHHHHHHhcc--CCCeeEEEEeCCCCCCCcccCHH---HHHHHHHhCCCEEEEEcCCCCCCccc-
Q 009172 276 TATVIDP-------ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVDVK---LVSDLCHKKGAIVCIDGTFATPLNQK- 342 (541)
Q Consensus 276 ~v~~vd~-------~dle~Le~ai~--~~~tklV~lesp~NPtG~v~di~---~Ia~la~~~gillvvDea~a~~~~~~- 342 (541)
++..++. .|+++|+++++ +.+++++++++|+||||.+++.+ +|+++|+++|+++|+||+|.......
T Consensus 154 ~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~ 233 (409)
T 4eu1_A 154 ELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQL 233 (409)
T ss_dssp EEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCH
T ss_pred eEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCc
Confidence 8888764 27899999985 22467888899999999999855 58999999999999999987643221
Q ss_pred -----c---c-c-cCCcEEEECCccccCCCCCceEEE---EEeChH----HHHHHHHHhhhcCCCccHHHHHHHHHhHH-
Q 009172 343 -----A---L-S-LGADLVLHSATKFIGGHNDVLAGS---ISGSGK----LVTQIRNLHHVLGGALNPNAAYLIIRGMK- 404 (541)
Q Consensus 343 -----~---l-~-~gaDivv~S~sK~lgg~g~v~gG~---vv~~~~----li~~l~~~~~~~g~~~s~~~a~l~l~~l~- 404 (541)
+ + . ....+++.|+||.++.+|.. .|+ ++++++ +++.++..........+...++++...++
T Consensus 234 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r-iG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (409)
T 4eu1_A 234 DYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHR-CGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKD 312 (409)
T ss_dssp HHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGC-CEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHhhCCcEEEEecCcccccCccCC-ceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhCC
Confidence 1 1 1 23348899999999876643 566 456777 55555554433333344555444444433
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 405 ---------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 405 ---------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
.+....++..++++.+.+.|+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 344 (409)
T 4eu1_A 313 PQLTALWKKELKQMSSRIAEVRKRLVSELKAC 344 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23444556667778888888775
No 187
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.85 E-value=7e-21 Score=203.98 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=125.0
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEE
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATV 279 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~-~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~ 279 (541)
++....++.+...++++.+|+ +|.++.+++++|+ +|+.+++++++++||+|++++++|.++...+.. .|.++++
T Consensus 48 ~~d~~~~~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~----~G~~~~~ 122 (446)
T 2x3l_A 48 GLDDLHHPEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDI----SQQEGHF 122 (446)
T ss_dssp TSCCTTSCSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHH----HTCCEEE
T ss_pred CCccccCcchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHH----cCCeEEE
Confidence 344445567788999999999 9987777777776 999999999999999999999999997755432 4566655
Q ss_pred eCC--C---------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-----cccc
Q 009172 280 IDP--A---------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-----NQKA 343 (541)
Q Consensus 280 vd~--~---------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-----~~~~ 343 (541)
++. + |+++| +++ ++++|++++| |++|.+.|+++|.++|+++|+++|+|++++..+ ....
T Consensus 123 v~~~~~~~~~~~~~~d~~~l---~~~-~~~~v~~~~~-n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~ 197 (446)
T 2x3l_A 123 IETHQSPLTNHYNKVNLSRL---NND-GHKLVVLTYP-NYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDST 197 (446)
T ss_dssp CEEEECTTTSSEEEEEC-----------CCEEEEESS-CTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCG
T ss_pred EeCeeccccCcCCCCCHHHH---cCC-CceEEEEECC-CCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCCh
Confidence 543 2 34555 444 5899999994 569999999999999999999999999987622 2234
Q ss_pred cccCCcEEEECCccccCCCCCceEEEEEeChHHHH
Q 009172 344 LSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVT 378 (541)
Q Consensus 344 l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~ 378 (541)
...|+|+++.|+||+++++.. +|+++.++++++
T Consensus 198 ~~~g~Di~~~S~~K~l~~~~g--~g~l~~~~~~i~ 230 (446)
T 2x3l_A 198 LNYQADYVVQSFHKTLPALTM--GSVLYIHKNAPY 230 (446)
T ss_dssp GGGTCSEEEECHHHHSSSCTT--CEEEEEETTCTT
T ss_pred HHcCCCEEEECCccccccccc--cEEEEEcCCcCC
Confidence 456899999999997765532 588887766543
No 188
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.85 E-value=1.5e-19 Score=191.25 Aligned_cols=213 Identities=13% Similarity=0.095 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHhCC--------C--cEEEeCCHHHHHHHH--HHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEE
Q 009172 210 PTTVVVEEKMSALEGA--------E--STVIMASGMSASTVM--LLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITA 277 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~--------~--~~i~~sSG~~Ai~~a--l~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v 277 (541)
....+|++.++++++. + +.+++++|++|+.++ +.+++++||+|++++|+|.+.... +...|.++
T Consensus 92 ~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~----~~~~g~~~ 167 (420)
T 4f4e_A 92 DGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRAL----FDMAGFEV 167 (420)
T ss_dssp TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHH----HHHTTCCE
T ss_pred CCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHH----HHHcCCeE
Confidence 3456777777777632 2 345566667999998 456789999999999999986543 34457777
Q ss_pred EEeCC----C---CHHHHHHhccC--CCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc---c
Q 009172 278 TVIDP----A---DMEGLEAALNN--NNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ---K 342 (541)
Q Consensus 278 ~~vd~----~---dle~Le~ai~~--~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~---~ 342 (541)
..++. . |+++++++++. .++++|++++|+||||.+++ +++|+++|+++|+++|+|++|...... .
T Consensus 168 ~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~ 247 (420)
T 4f4e_A 168 VAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEAD 247 (420)
T ss_dssp EEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGG
T ss_pred EEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchh
Confidence 77654 2 79999999972 25899999999999999987 558888899999999999998654321 0
Q ss_pred --c-----cccCCcEEEECCccccCCCCCceEEEEEe---ChHHHHHHH----HHhhhcCCCccHHHHHHHHHhH-----
Q 009172 343 --A-----LSLGADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIR----NLHHVLGGALNPNAAYLIIRGM----- 403 (541)
Q Consensus 343 --~-----l~~gaDivv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~----~~~~~~g~~~s~~~a~l~l~~l----- 403 (541)
. ...+.++++.|+||.++.+|.. .|+++. ++++++.+. ..........+...++++...+
T Consensus 248 ~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R-iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 326 (420)
T 4f4e_A 248 AAAVRLFAAANLNVFVSSSFSKSFSLYGER-VGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPEL 326 (420)
T ss_dssp GHHHHHHHHTTCCEEEEEECTTTTTCGGGC-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHhcCCCEEEEEeCCccCcCcCCC-cEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhcCHHH
Confidence 1 1235679999999999966643 566542 456555432 2222122222333333322222
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhC
Q 009172 404 -----KTLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 404 -----~tl~~r~~~~~~na~~la~~L~~~ 427 (541)
+.+....++..++++.+.+.|+++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 355 (420)
T 4f4e_A 327 RASWVQELGEMRDRIRAMRNGLVERLKAA 355 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 223444555667778888888875
No 189
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.85 E-value=2.1e-20 Score=199.18 Aligned_cols=269 Identities=12% Similarity=0.066 Sum_probs=173.4
Q ss_pred HHHHHHHHHHHhC------C--CcEEEeCCHHHHHHHHHHHh--------ccCCCEEEEcCCCCcchHHHHHhhcccCCc
Q 009172 212 TVVVEEKMSALEG------A--ESTVIMASGMSASTVMLLAL--------VPAGGHIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 212 ~~~Le~~LA~l~g------~--~~~i~~sSG~~Ai~~al~al--------l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
..+||++||++++ . +++++++++++++.+++.++ +++||+|+++.|.|..+...+. ..|.
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~----~~g~ 177 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTK----YFDK 177 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHH----HSCB
T ss_pred hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHH----HcCC
Confidence 6889999999885 2 23445555569999999999 9999999999999988664443 3354
Q ss_pred EEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-cccccccCCcEEEEC
Q 009172 276 TATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHS 354 (541)
Q Consensus 276 ~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-~~~~l~~gaDivv~S 354 (541)
++..+. .|+++|++++++ ++|+|++++|+||||.+++ + +++ ++..+.|+.+.... ....+..+.++++.|
T Consensus 178 ~~~~~~-~d~~~l~~~~~~-~~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~~~~~i~~~S 248 (427)
T 2hox_A 178 KGYVWA-GNAANYVNVSNP-EQYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYKADEDILLFT 248 (427)
T ss_dssp TTEEEE-EEGGGGTTCSCG-GGEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSCBCCSEEEEE
T ss_pred eeeeec-CCHHHHHHhhcC-CceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccCCCceEEEEe
Confidence 433332 367888888876 5899999999999999999 4 233 56789998864321 111122568999999
Q ss_pred CccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHHhHHHH---------------HHHHHHHHHHHH
Q 009172 355 ATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTL---------------HLRVQQQNSTAL 418 (541)
Q Consensus 355 ~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~tl---------------~~r~~~~~~na~ 418 (541)
+||.++.+|. ..|++++ +++++++++..........+.....++...|+.. ....++..++.+
T Consensus 249 ~SK~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (427)
T 2hox_A 249 MSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWV 327 (427)
T ss_dssp HHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHH
T ss_pred ChhcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHH
Confidence 9999986663 4688888 5899999888766554455555554444444431 123345557778
Q ss_pred HHHHHHHhCCCceEEeC--CCCCCCchhhhHhhhcCCcccEEEEEEcCCH-HHHHHHHHHcCCCceeecCCCcccceecC
Q 009172 419 RMAEILEAHPKVKRVHY--PGLKSHPEHHIATQQMTGFGGVVSFEVDGDL-TATIKFIDALKIPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~--Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~-~~~~~~l~~L~~~~iavS~G~~~sl~~~p 495 (541)
.+.+.|++++++....+ |. +...++-.....|.++++.++.+. +....+++ ..++.+..|..+
T Consensus 328 ~l~~~L~~~~g~~~~~~~~~~-----~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~ll~---~~gI~v~pg~~f------ 393 (427)
T 2hox_A 328 NITALLDQSDRFSYQELPQSE-----YCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQ---NGRINTQNGVGF------ 393 (427)
T ss_dssp HHHHHHTTSSSEECCCCCSCE-----EETTTTEEECCCCSEEEEEECSGGGCSHHHHHH---HTTEECEEGGGG------
T ss_pred HHHHHHHhCcCcccccccccc-----ccccccccCCCCceEEEEECCCcHHHHHHHHHH---HCCEEEcCCCcc------
Confidence 88888887765421001 11 000000011235778999997421 12233332 346666655432
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecC
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGV 524 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~ 524 (541)
+..+++||||++.
T Consensus 394 ----------------~~~~~~~Ris~~~ 406 (427)
T 2hox_A 394 ----------------EASSRYVRLSLIK 406 (427)
T ss_dssp ----------------TSCTTEEEEECSS
T ss_pred ----------------CCCCCEEEEEecC
Confidence 1125799999996
No 190
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.84 E-value=1.9e-19 Score=190.79 Aligned_cols=290 Identities=12% Similarity=0.105 Sum_probs=184.5
Q ss_pred CCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHhhcc---------
Q 009172 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP--------- 271 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~~~l~--------- 271 (541)
..|.++...+++++|+++++. +.+++++||++|+..+++.+. ..+|+||+.++.|++..........
T Consensus 80 ~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~ 159 (433)
T 1zod_A 80 SEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGP 159 (433)
T ss_dssp TTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCC
T ss_pred cccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCC
Confidence 456778889999999999974 567778889999999988653 3468999999999874432211100
Q ss_pred -cCCcEEEEeCC------C---------CHHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCE
Q 009172 272 -KMGITATVIDP------A---------DMEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAI 328 (541)
Q Consensus 272 -~~Gi~v~~vd~------~---------dle~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gil 328 (541)
..|+....++. . |+++|++++++ +++++|+++.++||+|.+++ +++|.++|++||++
T Consensus 160 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 239 (433)
T 1zod_A 160 AAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGML 239 (433)
T ss_dssp CCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCE
T ss_pred CCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCE
Confidence 12444332221 1 38899998862 35888888766688998776 99999999999999
Q ss_pred EEEEcCCCCCC-cc-----cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhh--cCCCccHHHHHHHH
Q 009172 329 VCIDGTFATPL-NQ-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHV--LGGALNPNAAYLII 400 (541)
Q Consensus 329 lvvDea~a~~~-~~-----~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~--~g~~~s~~~a~l~l 400 (541)
||+||+|.... .. .......|++ |++|.+++ | ...|++++++++++.+...... .....++..+..+.
T Consensus 240 li~DEv~~~~g~~g~~~~~~~~~~~~di~--s~sK~~~~-G-~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~ 315 (433)
T 1zod_A 240 LILDEAQTGVGRTGTMFACQRDGVTPDIL--TLSKTLGA-G-LPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGL 315 (433)
T ss_dssp EEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECHHHHT-T-SSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHH
T ss_pred EEEeccccCCCcCchHhHHhhcCCCCCEE--EecccccC-C-CCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHH
Confidence 99999987421 11 1122335654 78899997 4 4578899999998888763212 12233566665555
Q ss_pred HhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HH
Q 009172 401 RGMKTLHL--RVQQQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LT 467 (541)
Q Consensus 401 ~~l~tl~~--r~~~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-------~~ 467 (541)
..++.+.. ..++..++.+++.+.|++ ++.+..+ ++.|.+++|++++. ..
T Consensus 316 aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~------------------~~~g~~~~i~~~~~~~~~~~~~~ 377 (433)
T 1zod_A 316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDV------------------RGRGLLLGVEIVKDRRTKEPADG 377 (433)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEEEETTTTEECTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEEecCccccCCChH
Confidence 55554322 344555666666666654 2322111 23577899988631 12
Q ss_pred HHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 468 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 468 ~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
...++.+.+...++.+..|+. .+ .++.|||++... +.+++++.|+++++
T Consensus 378 ~~~~~~~~l~~~Gv~v~~~~~----------------------~~-~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~ 430 (433)
T 1zod_A 378 LGAKITRECMNLGLSMNIVQL----------------------PG-MGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430 (433)
T ss_dssp HHHHHHHHHHHTTEECCEECC----------------------TT-SCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEeccCC----------------------CC-CCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence 345566666545665554321 11 247899987654 44555555555554
No 191
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.84 E-value=4.4e-20 Score=192.78 Aligned_cols=213 Identities=15% Similarity=0.100 Sum_probs=144.2
Q ss_pred hhHHHHHHHHHHHh-CC----CcEEE--eCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 210 PTTVVVEEKMSALE-GA----ESTVI--MASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 210 p~~~~Le~~LA~l~-g~----~~~i~--~sSG~~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
....+|+++|++++ +. ++.++ +++|++|+.+++..+.. +||+|+++.|+|++....+ ...|.++..+
T Consensus 69 ~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~----~~~g~~~~~~ 144 (394)
T 2ay1_A 69 SGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIM----NFMGLPVQTY 144 (394)
T ss_dssp SCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHH----HHHTCCEEEE
T ss_pred CCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHH----HHcCCceEEE
Confidence 44678999999986 43 45666 77788999999887654 9999999999999866443 3346777666
Q ss_pred CC---C----CHHHHHHhccCC--CeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCCCCCCcc-------
Q 009172 281 DP---A----DMEGLEAALNNN--NVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFATPLNQ------- 341 (541)
Q Consensus 281 d~---~----dle~Le~ai~~~--~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~a~~~~~------- 341 (541)
+. . |+++++++++++ +++++++++|+||||.+++ +++|.++|+++|+++|+|++|......
T Consensus 145 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~ 224 (394)
T 2ay1_A 145 RYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAG 224 (394)
T ss_dssp ECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHH
T ss_pred ecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHH
Confidence 54 2 799999998753 3678888999999999987 557899999999999999998764321
Q ss_pred -ccc-ccC-CcEEEECCccccCCCCCceEEEEEe---ChHHHHHHH----HHhhhcCCCccHHHHHHHHHhHH-------
Q 009172 342 -KAL-SLG-ADLVLHSATKFIGGHNDVLAGSISG---SGKLVTQIR----NLHHVLGGALNPNAAYLIIRGMK------- 404 (541)
Q Consensus 342 -~~l-~~g-aDivv~S~sK~lgg~g~v~gG~vv~---~~~li~~l~----~~~~~~g~~~s~~~a~l~l~~l~------- 404 (541)
..+ ..+ .++++.|+||.++.+| ...|++++ ++++++.+. ..........++..++++...++
T Consensus 225 ~~~~~~~~~~~i~~~s~sK~~~~~G-~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~l~~~ 303 (394)
T 2ay1_A 225 TRLIASRIPEVLIAASCSKNFGIYR-ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRAD 303 (394)
T ss_dssp HHHHHHHCSSEEEEEECTTTTTCGG-GCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHH
T ss_pred HHHHhhcCCCEEEEEeccCCCcCcC-CccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhcChHHHHH
Confidence 111 123 3478999999998655 34677776 666554433 22111112224444444433333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 405 ---TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 405 ---tl~~r~~~~~~na~~la~~L~~~ 427 (541)
.+....++..++++.+.+.|+++
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~L~~~ 329 (394)
T 2ay1_A 304 WMAELEAVRSGMLRLREQLAGELRDL 329 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333444556667777777654
No 192
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.84 E-value=2e-19 Score=196.00 Aligned_cols=221 Identities=13% Similarity=0.127 Sum_probs=157.5
Q ss_pred CCchhHHHHHHH----HHHHhCCC----cEEEeCCHHHHHHHHHHHhcc--------------CCCEEEEcCCCCcchHH
Q 009172 207 YGNPTTVVVEEK----MSALEGAE----STVIMASGMSASTVMLLALVP--------------AGGHIVTTTDCYRKTRI 264 (541)
Q Consensus 207 ~~~p~~~~Le~~----LA~l~g~~----~~i~~sSG~~Ai~~al~all~--------------~GD~VIv~~~~y~~~~~ 264 (541)
...|...++|+. +++++|.+ ..+++++|++|+..++.++.. +++.|+++...|.+...
T Consensus 128 ~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~ 207 (511)
T 3vp6_A 128 EIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKK 207 (511)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHH
Confidence 356776666664 56667764 567888889999888876643 57899999999988665
Q ss_pred HHHhhcccCCc---EEEEeCCC-----CHHHHHHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE
Q 009172 265 FIETVLPKMGI---TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 265 ~~~~~l~~~Gi---~v~~vd~~-----dle~Le~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvv 331 (541)
.+ ...|+ +++.++.+ |+++|+++|+++ ++++|++++++|++|.+.|+++|+++|++||+++++
T Consensus 208 ~~----~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhv 283 (511)
T 3vp6_A 208 AG----AALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 283 (511)
T ss_dssp HH----HHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HH----HHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 44 33344 67777643 899999999652 188999999999999999999999999999999999
Q ss_pred EcCCCCCCcccc----c---ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh-hhc----------------
Q 009172 332 DGTFATPLNQKA----L---SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HVL---------------- 387 (541)
Q Consensus 332 Dea~a~~~~~~~----l---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-~~~---------------- 387 (541)
|++|+.+....+ . ..++|+++.++||+++++.+. +++++.++++........ ...
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~-g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~ 362 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQC-SAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK 362 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCC-EEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCe-EEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence 999887543211 1 135799999999999876432 444455555555432110 000
Q ss_pred ----CCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceE
Q 009172 388 ----GGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVKR 432 (541)
Q Consensus 388 ----g~~~s~~~a~l~l~--~l~tl~~r~~~~~~na~~la~~L~~~p~v~~ 432 (541)
+.....+..|.+++ +.+.+..++++..++++++.+.|++.|+++-
T Consensus 363 ~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l 413 (511)
T 3vp6_A 363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEM 413 (511)
T ss_dssp SSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEE
T ss_pred CCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 11123344454443 4456788889999999999999999887653
No 193
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.84 E-value=2.6e-19 Score=189.83 Aligned_cols=294 Identities=13% Similarity=0.089 Sum_probs=178.6
Q ss_pred CCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc--------cCCCEEEEcCCCCcchHHHHHhhccc---
Q 009172 206 RYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV--------PAGGHIVTTTDCYRKTRIFIETVLPK--- 272 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all--------~~GD~VIv~~~~y~~~~~~~~~~l~~--- 272 (541)
++.++...+|+++|+++++. +++++++||++|+..+++.++ ..+|+||+.++.|++........-..
T Consensus 68 ~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~ 147 (430)
T 3i4j_A 68 QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGAR 147 (430)
T ss_dssp TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC-----------------
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCcccc
Confidence 67888999999999999974 567888889999999998876 34789999999998854221111000
Q ss_pred ------CCc--EEEEeCCC--------CHHHHHHhccC---CCeeEEEEeCCCC-CCCcccC----HHHHHHHHHhCCCE
Q 009172 273 ------MGI--TATVIDPA--------DMEGLEAALNN---NNVSLFFTESPTN-PFLRCVD----VKLVSDLCHKKGAI 328 (541)
Q Consensus 273 ------~Gi--~v~~vd~~--------dle~Le~ai~~---~~tklV~lesp~N-PtG~v~d----i~~Ia~la~~~gil 328 (541)
... .+..++.. |+++|+++++. +++++|+++.++| ++|.+.+ +++|.++|++||++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~ 227 (430)
T 3i4j_A 148 RELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGII 227 (430)
T ss_dssp --------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCE
T ss_pred ccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCE
Confidence 000 22233332 45888888862 3578888888888 9998877 99999999999999
Q ss_pred EEEEcCCCCCCc------cccc-ccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH----hhhcCCCccHHHHH
Q 009172 329 VCIDGTFATPLN------QKAL-SLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL----HHVLGGALNPNAAY 397 (541)
Q Consensus 329 lvvDea~a~~~~------~~~l-~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~----~~~~g~~~s~~~a~ 397 (541)
||+||+|..... .... ....|++ +++|.+++ |-...|++++++++++.+... ........++..+.
T Consensus 228 li~DEv~~~~~~~g~~~~~~~~~~~~~di~--t~sK~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~a 304 (430)
T 3i4j_A 228 FIADEVMSGMGRCGSPLALSRWSGVTPDIA--VLGKGLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVA 304 (430)
T ss_dssp EEEECTTTTTTTTSSSSGGGGTTTCCCSEE--EECGGGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHH
T ss_pred EEEechhhCCCcccchhhhhhhcCCCCcEE--EEcccccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHH
Confidence 999999764311 1112 2235666 47799986 313468888999999888763 22222345677666
Q ss_pred HHHHhHHHHH--HHHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------
Q 009172 398 LIIRGMKTLH--LRVQQQNSTALRMAEILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------ 465 (541)
Q Consensus 398 l~l~~l~tl~--~r~~~~~~na~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~------ 465 (541)
.++..++.+. ...++..++.+++.+.|. .+|.+..+ ++.|.+++|++.+.
T Consensus 305 aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~ 366 (430)
T 3i4j_A 305 AGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV------------------RGTGLLLGVVLGDLATGQAF 366 (430)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEC--------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCCCeEEE------------------EEEEEEEEEEeccccccCCC
Confidence 6666666432 224444555555555554 34443322 23577899988521
Q ss_pred --HHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHh
Q 009172 466 --LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALH 539 (541)
Q Consensus 466 --~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~ 539 (541)
.+.+.++.+.+...++.+..+.... .|..++.|||+++. |+.+++++.|+++|+
T Consensus 367 ~~~~~~~~~~~~l~~~Gv~v~~~~~~~--------------------~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 426 (430)
T 3i4j_A 367 ETPGIASRIGAAALKRGLITYPGSGAE--------------------PNGRGDHLLLGPPLSITAAEVDGLLALLAGALE 426 (430)
T ss_dssp ----CHHHHHHHHHHTTEECC-------------------------------CEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCEEEeccccc--------------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 1112455565554565554331100 12235789999764 445666666666665
Q ss_pred h
Q 009172 540 A 540 (541)
Q Consensus 540 ~ 540 (541)
+
T Consensus 427 ~ 427 (430)
T 3i4j_A 427 D 427 (430)
T ss_dssp H
T ss_pred H
Confidence 3
No 194
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.84 E-value=1.5e-19 Score=204.12 Aligned_cols=218 Identities=11% Similarity=0.042 Sum_probs=158.0
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---- 282 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~-~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---- 282 (541)
+++...++|+.+|+++|++.++++++|+ +|+.+++.+++++||+||++.++|.+.+.. .+...|+++++++.
T Consensus 171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~---~~~l~Ga~~v~v~~~~~~ 247 (730)
T 1c4k_A 171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS---ALAMAGGRPVYLQTNRNP 247 (730)
T ss_dssp TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHH---HTTTTCCEEEEECEEECT
T ss_pred ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHH---HHHHCCCEEEEEeCCccc
Confidence 4567899999999999999889999997 899999999999999999999999887643 14556888777653
Q ss_pred ------CCHHHH-----HHhccCCC-----e----eEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-
Q 009172 283 ------ADMEGL-----EAALNNNN-----V----SLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ- 341 (541)
Q Consensus 283 ------~dle~L-----e~ai~~~~-----t----klV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~- 341 (541)
.|+++| ++++++++ + |+|++++| |++|.+.|+++|+++|+++|++|++|++|+..+..
T Consensus 248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~ 326 (730)
T 1c4k_A 248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI 326 (730)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccC
Confidence 266777 88887631 4 89999998 58999999999999999999999999998753211
Q ss_pred ------ccccc---CCc----EEEECCccccCCCCCceEEEEEeChHH---------HHHHHHHhhhc-CCCccHHHHHH
Q 009172 342 ------KALSL---GAD----LVLHSATKFIGGHNDVLAGSISGSGKL---------VTQIRNLHHVL-GGALNPNAAYL 398 (541)
Q Consensus 342 ------~~l~~---gaD----ivv~S~sK~lgg~g~v~gG~vv~~~~l---------i~~l~~~~~~~-g~~~s~~~a~l 398 (541)
.++.. |+| +++.|+||+++|+. .+|+++.+++. ..+++.....+ .++++......
T Consensus 327 ~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~--~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaa 404 (730)
T 1c4k_A 327 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 404 (730)
T ss_dssp GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred cccCCcCcccccccCCCCCCEEEEECCCCCCCCCC--CEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHH
Confidence 22333 788 99999999999875 35777543322 12333332222 23333332222
Q ss_pred HHHhHH-----HHHHHHHHHHHHHHHHHHHHHh-CCCce
Q 009172 399 IIRGMK-----TLHLRVQQQNSTALRMAEILEA-HPKVK 431 (541)
Q Consensus 399 ~l~~l~-----tl~~r~~~~~~na~~la~~L~~-~p~v~ 431 (541)
+..+++ ....++++..++++++.+.|++ .+++.
T Consensus 405 l~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~ 443 (730)
T 1c4k_A 405 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFR 443 (730)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeE
Confidence 112222 2345677788889999999988 56664
No 195
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.84 E-value=5.7e-19 Score=189.43 Aligned_cols=291 Identities=12% Similarity=0.079 Sum_probs=186.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHhh--
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~--------~GD~VIv~~~~y~~~~~~~~~~-- 269 (541)
+.+.++.++...+|+++|+++.+. +.+++++||++|+..+++.+.. ++++||+.++.|++........
T Consensus 87 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~ 166 (460)
T 3gju_A 87 HAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTG 166 (460)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCC
T ss_pred ccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccC
Confidence 444567888999999999999853 5788888999999999988764 4699999999998854322111
Q ss_pred -------cccCCcEEEEeC--C----CC------------HHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHH
Q 009172 270 -------LPKMGITATVID--P----AD------------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKL 317 (541)
Q Consensus 270 -------l~~~Gi~v~~vd--~----~d------------le~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~ 317 (541)
.......+..++ . .| +++|+++++. +++++|++|+++|++|.+.+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~ 246 (460)
T 3gju_A 167 LDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEK 246 (460)
T ss_dssp CGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHH
T ss_pred CcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHH
Confidence 111112233333 1 22 6889888862 35899999998899998776 999
Q ss_pred HHHHHHhCCCEEEEEcCCCCCC-c-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH-------h
Q 009172 318 VSDLCHKKGAIVCIDGTFATPL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-------H 384 (541)
Q Consensus 318 Ia~la~~~gillvvDea~a~~~-~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~-------~ 384 (541)
|.++|++||++||+||+|.... . ........|+++ ++|.++++. ...|++++++++++.+... .
T Consensus 247 l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t--~sK~l~gG~-~~lg~v~~~~~i~~~~~~~~~~~~~~~ 323 (460)
T 3gju_A 247 IQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLIT--IAKGLTSAY-APLSGVIVADRVWQVLVQGSDKLGSLG 323 (460)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHHHHHHHHCSCS
T ss_pred HHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--eehhhcCCC-CCeEEEEECHHHHHHHhcccccccccc
Confidence 9999999999999999976431 1 111223356664 679998742 2468888999998888632 1
Q ss_pred hhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHH----HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEE
Q 009172 385 HVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVV 458 (541)
Q Consensus 385 ~~~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~~L----~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~v 458 (541)
.......++..+..++..++.+.. ..++..++.+++.+.| .+++.+..+ ++.|.++
T Consensus 324 ~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~ 385 (460)
T 3gju_A 324 HGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVGEV------------------RGDGMLA 385 (460)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------eeeeEEE
Confidence 112233467777766666664422 2344445555555555 344443322 2357789
Q ss_pred EEEEcCCH----------HHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----
Q 009172 459 SFEVDGDL----------TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV---- 524 (541)
Q Consensus 459 sf~l~g~~----------~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~---- 524 (541)
+|++..+. +....+.+.+...++.+..++ .++.|||++.+
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------------~~~~iRi~~~~~~t~ 439 (460)
T 3gju_A 386 AVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP--------------------------QGDILGFAPPLCLTR 439 (460)
T ss_dssp EEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS--------------------------SSCEEEECCCTTCCH
T ss_pred EEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC--------------------------CCCEEEEECCCCCCH
Confidence 99886321 124455555544454433221 24789999654
Q ss_pred CCHHHHHHHHHHHHh
Q 009172 525 EDFEDLKADVLQALH 539 (541)
Q Consensus 525 Ed~edli~dL~~AL~ 539 (541)
|+.+++++.|+++|+
T Consensus 440 e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 440 EQADIVVSKTADAVK 454 (460)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666665
No 196
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.84 E-value=3.4e-19 Score=191.07 Aligned_cols=289 Identities=14% Similarity=0.109 Sum_probs=185.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHhh--
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~--------~GD~VIv~~~~y~~~~~~~~~~-- 269 (541)
+.+.++.++...+|+++|+++++. +.+++++||++|+..+++.+.+ ++++||+.++.|++........
T Consensus 86 ~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~ 165 (459)
T 4a6r_A 86 NTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG 165 (459)
T ss_dssp CTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC
Confidence 455678899999999999999864 5788888899999999988775 5799999999999854322111
Q ss_pred -------cccCCcEEEEeCCC---------C--------HHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHHH
Q 009172 270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV 318 (541)
Q Consensus 270 -------l~~~Gi~v~~vd~~---------d--------le~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~I 318 (541)
.......+..++.. | +++|+++++. +++++|++|.++|++|.+.+ +++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l 245 (459)
T 4a6r_A 166 MKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEI 245 (459)
T ss_dssp CTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHH
T ss_pred ChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHH
Confidence 01111123334311 2 7888888862 35889999888888888887 9999
Q ss_pred HHHHHhCCCEEEEEcCCCCCC-c-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHH---HhhhcCC
Q 009172 319 SDLCHKKGAIVCIDGTFATPL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LHHVLGG 389 (541)
Q Consensus 319 a~la~~~gillvvDea~a~~~-~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~---~~~~~g~ 389 (541)
.++|++||++||+||+|.... . ........|+++ ++|.+++++ ...|++++++++++.+.. .......
T Consensus 246 ~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t--~sK~l~gg~-~~lg~v~~~~~i~~~~~~~~~~~~~~t~ 322 (459)
T 4a6r_A 246 ERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFT--AAKGLSSGY-LPIGAVFVGKRVAEGLIAGGDFNHGFTY 322 (459)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeee--hhhhhcCCC-CCccceeeCHHHHHHhhcCCCcccCCCC
Confidence 999999999999999976421 1 112233456665 679998753 235788899999888872 1221122
Q ss_pred CccHHHHHHHHHhHHHHH--HHHHHHH-HHHHHHHHHH----HhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEE
Q 009172 390 ALNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAEIL----EAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEV 462 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl~--~r~~~~~-~na~~la~~L----~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l 462 (541)
..++..+.+++..++.+. ...++.. ++.+++.+.| .+++.+..+ ++.|.+++|++
T Consensus 323 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~------------------~~~g~~~~~~~ 384 (459)
T 4a6r_A 323 SGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDV------------------RGVGMVQAFTL 384 (459)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEE------------------EEETTEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEEEE
Confidence 345666666666666443 2234444 4555555555 333433222 34678899988
Q ss_pred cCC----------HHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHH
Q 009172 463 DGD----------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFE 528 (541)
Q Consensus 463 ~g~----------~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~e 528 (541)
..+ ......+.+.+...++.+..+ | +.|||++.+ |+.+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-------------------------g---~~iRi~~~~~~t~e~i~ 436 (459)
T 4a6r_A 385 VKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRAC-------------------------G---DHIVSAPPLVMTRAEVD 436 (459)
T ss_dssp CSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEE-------------------------T---TEEEECCCTTCCHHHHH
T ss_pred ecCccccccccchHHHHHHHHHHHHHCCeEEecC-------------------------C---CEEEEECCCCCCHHHHH
Confidence 632 112445555554445433221 1 689999654 3455
Q ss_pred HHHHHHHHHHh
Q 009172 529 DLKADVLQALH 539 (541)
Q Consensus 529 dli~dL~~AL~ 539 (541)
++++.|+++|+
T Consensus 437 ~~l~~l~~~l~ 447 (459)
T 4a6r_A 437 EMLAVAERCLE 447 (459)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 197
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.84 E-value=1.2e-19 Score=195.97 Aligned_cols=245 Identities=15% Similarity=0.161 Sum_probs=165.5
Q ss_pred chhHHHHHH----HHHHHhCCCc-----------EEEeCCHHHHHHHHHHHhccC---------CC----------EEEE
Q 009172 209 NPTTVVVEE----KMSALEGAES-----------TVIMASGMSASTVMLLALVPA---------GG----------HIVT 254 (541)
Q Consensus 209 ~p~~~~Le~----~LA~l~g~~~-----------~i~~sSG~~Ai~~al~all~~---------GD----------~VIv 254 (541)
.|...++|+ .+++++|.+. .+++++|++|+..++.++..+ || .|++
T Consensus 108 ~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~ 187 (486)
T 1js3_A 108 SPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYA 187 (486)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEE
T ss_pred ChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEE
Confidence 455555554 5577778752 688899999998888765321 43 3788
Q ss_pred cCCCCcchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCCCe------eEEEEeCCCCCCCcccCHHHHHHHHH
Q 009172 255 TTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNNNV------SLFFTESPTNPFLRCVDVKLVSDLCH 323 (541)
Q Consensus 255 ~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-----dle~Le~ai~~~~t------klV~lesp~NPtG~v~di~~Ia~la~ 323 (541)
+.+.|.+... .+...|++++.++.+ |+++|+++|+++ + .+|++++|+||+|.+.|+++|+++|+
T Consensus 188 s~~~h~s~~~----~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~-~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~ 262 (486)
T 1js3_A 188 SDQAHSSVER----AGLIGGVKLKAIPSDGKFAMRASALQEALERD-KAAGLIPFFVVATLGTTSCCSFDNLLEVGPICH 262 (486)
T ss_dssp ETTCCHHHHH----HHHHHTCEEEEECCCTTSCCCHHHHHHHHHHH-HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHH
T ss_pred CCCCcHHHHH----HHHhCCCceEEeecCCCCCCCHHHHHHHHHHH-HhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 9999988654 334458888888753 899999999763 4 38999999999999999999999999
Q ss_pred hCCCEEEEEcCCCCCCccc----cc---ccCCcEEEECCccccCCCCCceEEEEEeCh-HH-HHHHH---HHhhh-----
Q 009172 324 KKGAIVCIDGTFATPLNQK----AL---SLGADLVLHSATKFIGGHNDVLAGSISGSG-KL-VTQIR---NLHHV----- 386 (541)
Q Consensus 324 ~~gillvvDea~a~~~~~~----~l---~~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~l-i~~l~---~~~~~----- 386 (541)
+||+++++|++|+.+.... .. -.++|.++.++||+++++. ..|+++.++ .+ .+.+. .+...
T Consensus 263 ~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~--~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~ 340 (486)
T 1js3_A 263 EEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF--DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGS 340 (486)
T ss_dssp HTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS--SCEEEEESCHHHHHGGGC------------C
T ss_pred HcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc--ceEEEEEeCHHHHHHHhcCCchhhCCCcccc
Confidence 9999999999988643211 11 1268999999999998654 257666654 33 33221 11100
Q ss_pred ------------cCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcC
Q 009172 387 ------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMT 452 (541)
Q Consensus 387 ------------~g~~~s~~~a~l~l~--~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~ 452 (541)
.+........|.+++ +.+.+..++++..++++++.+.|++.|+++.+..|
T Consensus 341 ~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~---------------- 404 (486)
T 1js3_A 341 GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV---------------- 404 (486)
T ss_dssp CSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC----------------
T ss_pred cCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC----------------
Confidence 011123344444443 44567777888889999999999988776432212
Q ss_pred CcccEEEEEEcCCHHHHHHHHHHcC
Q 009172 453 GFGGVVSFEVDGDLTATIKFIDALK 477 (541)
Q Consensus 453 g~g~~vsf~l~g~~~~~~~~l~~L~ 477 (541)
.++++.|.+++......++.+.|.
T Consensus 405 -~~~~v~f~~~~~~~~~~~l~~~L~ 428 (486)
T 1js3_A 405 -TLGLVCFRLKGSDGLNEALLERIN 428 (486)
T ss_dssp -CSSEEEEEESSCHHHHHHHHHHHH
T ss_pred -ceeEEEEEecChHHHHHHHHHHHH
Confidence 246888988753223355666554
No 198
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.83 E-value=8.7e-20 Score=196.06 Aligned_cols=290 Identities=12% Similarity=0.101 Sum_probs=189.0
Q ss_pred CCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc-------CC-CEEEEcCCCCcchHHHHHhh----
Q 009172 204 YGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP-------AG-GHIVTTTDCYRKTRIFIETV---- 269 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~-------~G-D~VIv~~~~y~~~~~~~~~~---- 269 (541)
++++.++...+|+++|+++.+. +.+++++||++|+..+++.+.. +| ++||+.++.|++........
T Consensus 112 ~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~ 191 (457)
T 3tfu_A 112 FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPH 191 (457)
T ss_dssp SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC
T ss_pred ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCc
Confidence 4778889999999999999963 5788889999999999987764 55 48999999998743222111
Q ss_pred ------cccCCcEEEEeCC-------CCHHHHHHhccC--CCeeEEEEeC-CCCCCCcccC----HHHHHHHHHhCCCEE
Q 009172 270 ------LPKMGITATVIDP-------ADMEGLEAALNN--NNVSLFFTES-PTNPFLRCVD----VKLVSDLCHKKGAIV 329 (541)
Q Consensus 270 ------l~~~Gi~v~~vd~-------~dle~Le~ai~~--~~tklV~les-p~NPtG~v~d----i~~Ia~la~~~gill 329 (541)
.......+.+++. .|+++|++++++ +++++|++|+ ++|++|.+++ +++|.++|++||++|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gill 271 (457)
T 3tfu_A 192 GGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLL 271 (457)
T ss_dssp ----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEE
T ss_pred ccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 0111112233332 378899998872 2589999999 9999999886 999999999999999
Q ss_pred EEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH-----hhhcCCCccHHHHHH
Q 009172 330 CIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL-----HHVLGGALNPNAAYL 398 (541)
Q Consensus 330 vvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~-----~~~~g~~~s~~~a~l 398 (541)
|+||++.... .........|++ +++|.++|+. ...|++++++++++.+... ........++..+..
T Consensus 272 I~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~gG~-~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aa 348 (457)
T 3tfu_A 272 IFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTGGY-LSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAV 348 (457)
T ss_dssp EEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTS-SCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHH
T ss_pred EEEcCccCCccccchhHhHhcCCCceEE--EEChhhhCCC-cceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHH
Confidence 9999976321 112223345776 6889998742 2468888999998887532 111223456777777
Q ss_pred HHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHc
Q 009172 399 IIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDAL 476 (541)
Q Consensus 399 ~l~~l~tl~~--r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L 476 (541)
++..++.+.. ..++..++.+++.+.|++.. .+|.+ ...++.|.+++|+++... ...++.+.|
T Consensus 349 a~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-----~~~~v----------~~vr~~G~~~~i~l~~~~-~~~~~~~~l 412 (457)
T 3tfu_A 349 SVASVELLLGQDWRTRITELAAGLTAGLDTAR-----ALPAV----------TDVRVCGAIGVIECDRPV-DLAVATPAA 412 (457)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-----GSTTE----------EEEEECSSCEEEEESSCC-CHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----cCCCe----------eeeecCCeEEEEEECCcc-cHHHHHHHH
Confidence 6667765432 24455566677777776531 11211 011346789999997531 234455555
Q ss_pred CCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009172 477 KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 477 ~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~~ 540 (541)
...++.+.. ..+.|||+... |+.+++++.|+++|++
T Consensus 413 ~~~Gv~v~~----------------------------~~~~lRi~p~~~~t~eei~~~l~~L~~~l~~ 452 (457)
T 3tfu_A 413 LDRGVWLRP----------------------------FRNLVYAMPPYICTPAEITQITSAMVEVARL 452 (457)
T ss_dssp HHTTEECCC----------------------------BTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCeEEEe----------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 444543321 12579998654 4556666667666654
No 199
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.83 E-value=3.2e-19 Score=190.59 Aligned_cols=296 Identities=14% Similarity=0.175 Sum_probs=189.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCCC-cEEEeCCHHHHHHHHHHHhc-----c---CCCEEEEcCCCCcchHHHHHhhc--
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGAE-STVIMASGMSASTVMLLALV-----P---AGGHIVTTTDCYRKTRIFIETVL-- 270 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~~-~~i~~sSG~~Ai~~al~all-----~---~GD~VIv~~~~y~~~~~~~~~~l-- 270 (541)
+...++.++...+|+++|+++.+.. ++++++||++|+..+++.+. . ++|+||+.++.|++........-
T Consensus 83 ~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~ 162 (452)
T 3n5m_A 83 YFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQ 162 (452)
T ss_dssp CCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCC
T ss_pred CcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCc
Confidence 3334677899999999999999753 47788889999999998876 4 78999999999987542221110
Q ss_pred -------ccCCcEEEEeCC--------CC---------HHHHHHhcc---CCCeeEEEEeCC-CCCCCcccC----HHHH
Q 009172 271 -------PKMGITATVIDP--------AD---------MEGLEAALN---NNNVSLFFTESP-TNPFLRCVD----VKLV 318 (541)
Q Consensus 271 -------~~~Gi~v~~vd~--------~d---------le~Le~ai~---~~~tklV~lesp-~NPtG~v~d----i~~I 318 (541)
......+.+++. .| +++|+++++ ++++++|++|++ +| +|.+++ +++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l 241 (452)
T 3n5m_A 163 AQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAV 241 (452)
T ss_dssp GGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHH
T ss_pred hhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHH
Confidence 001112334432 23 899999987 235899999998 89 998887 9999
Q ss_pred HHHHHhCCCEEEEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHH---Hh---hh
Q 009172 319 SDLCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---LH---HV 386 (541)
Q Consensus 319 a~la~~~gillvvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~---~~---~~ 386 (541)
.++|++||++||+||+|.... .........|++ +++|.+++ |-...|++++++++++.+.. .. ..
T Consensus 242 ~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~ 318 (452)
T 3n5m_A 242 HETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDII--TMAKGITS-AYLPLSATAVKREIYEAFKGKGEYEFFRHI 318 (452)
T ss_dssp HHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCC
T ss_pred HHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEE--eecccccC-CCcceEEEEECHHHHHHHhhccCCCCcccc
Confidence 999999999999999976421 112222335666 47899986 31346788889888877642 11 11
Q ss_pred cCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEE
Q 009172 387 LGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSF 460 (541)
Q Consensus 387 ~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf 460 (541)
.....++..+..++..++.+.. ..++..++.+++.+.|++ +|.+..+ ++.|.+++|
T Consensus 319 ~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~i 380 (452)
T 3n5m_A 319 NTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDI------------------RGKGLLVGI 380 (452)
T ss_dssp CSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEE------------------EESSSCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EEEEEEEEE
Confidence 2233467777766666665432 244555556666666554 3333222 235678888
Q ss_pred EEcCC--------HHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHH
Q 009172 461 EVDGD--------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFE 528 (541)
Q Consensus 461 ~l~g~--------~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~e 528 (541)
++..+ .+...++.+.+...|+.+..++.+. +..++.|||+++.. +.+
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~---------------------~~~~~~iRi~~~~~~t~e~i~ 439 (452)
T 3n5m_A 381 ELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTT---------------------AGYNNILTLAPPLVISSEEIA 439 (452)
T ss_dssp EEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSS---------------------TTCCCEEEECCCTTCCHHHHH
T ss_pred EEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCccc---------------------CCCCCEEEEECCCCCCHHHHH
Confidence 87421 2234456666555566555443211 01257999987654 455
Q ss_pred HHHHHHHHHHhh
Q 009172 529 DLKADVLQALHA 540 (541)
Q Consensus 529 dli~dL~~AL~~ 540 (541)
.+++.|+++|++
T Consensus 440 ~~l~~l~~~l~~ 451 (452)
T 3n5m_A 440 FVIGTLKTAMER 451 (452)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 556666666654
No 200
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.83 E-value=1.8e-19 Score=191.33 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=186.2
Q ss_pred CCCchhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHhhcc----------c
Q 009172 206 RYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP----------K 272 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g-~~~~i~~sSG~~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~~l~----------~ 272 (541)
.|+++...+|+++|+++++ .+.+++++||++|+..++..+.. ++++||+.++.|++.......... .
T Consensus 91 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 170 (434)
T 3l44_A 91 GTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDS 170 (434)
T ss_dssp SSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSS
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCc
Confidence 3678899999999999985 46788888999999999987654 789999999999874321100000 0
Q ss_pred CCc------EEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCc
Q 009172 273 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN 340 (541)
Q Consensus 273 ~Gi------~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~ 340 (541)
.++ .+..++..|+++|++++++ .++++|++|+++|++|.+.+ +++|.++|++||++||+||+|.....
T Consensus 171 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~ 250 (434)
T 3l44_A 171 AGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRF 250 (434)
T ss_dssp TTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTS
T ss_pred CCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceec
Confidence 111 4555666799999998862 24889999888888898887 99999999999999999999874311
Q ss_pred -----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh---hhcCCCccHHHHHHHHHhHHHHH--HHH
Q 009172 341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTLH--LRV 410 (541)
Q Consensus 341 -----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~---~~~g~~~s~~~a~l~l~~l~tl~--~r~ 410 (541)
........|++ +++|.+++ | ...|++++++++++.+.... .......++..+..++..++.+. ...
T Consensus 251 g~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~ 326 (434)
T 3l44_A 251 MYGGAQDLLGVTPDLT--ALGKVIGG-G-LPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLY 326 (434)
T ss_dssp SSSCHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHH
T ss_pred cccHHHHHcCCCCCee--ehhhhhcC-C-cCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence 11222335655 57899984 3 35678899998887765421 11123456666666666665432 234
Q ss_pred HHHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------------CHHHHHHHHH
Q 009172 411 QQQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------------DLTATIKFID 474 (541)
Q Consensus 411 ~~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g------------~~~~~~~~l~ 474 (541)
++..++.+++.+.|++ ++.+..+ ++.|+++++++.. +......+.+
T Consensus 327 ~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (434)
T 3l44_A 327 EKLDELGATLEKGILEQAAKHNIDITL------------------NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFK 388 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEE------------------EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEE------------------EeeccEEEEEEecCcccchhhccccCHHHHHHHHH
Confidence 5555666666666654 2322211 2367899998842 1223455666
Q ss_pred HcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009172 475 ALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA 540 (541)
Q Consensus 475 ~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~~ 540 (541)
.|...|+.+..++ .+.+|+++.. |+.+.+++.|++++++
T Consensus 389 ~l~~~Gv~v~~~~---------------------------~~~~rl~~~~t~e~i~~~l~~l~~~l~~ 429 (434)
T 3l44_A 389 LMLQEGVNLAPSK---------------------------YEAWFLTTEHTKEDIEYTIEAVGRAFAA 429 (434)
T ss_dssp HHHHTTEECCSST---------------------------TCCEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCeEEeecC---------------------------CCcEEEecccCHHHHHHHHHHHHHHHHH
Confidence 6654565554332 2356776432 4556666777766653
No 201
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.83 E-value=1.3e-19 Score=192.53 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=174.7
Q ss_pred CCCchhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHhhc----------cc
Q 009172 206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PK 272 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~-g~~~~i~~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~~l----------~~ 272 (541)
.+.++...+++++|+++. +.+.+++++||++|+.++++.. +.++++||+.++.|++......... ..
T Consensus 92 ~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~ 171 (434)
T 2epj_A 92 GAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTS 171 (434)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESS
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCC
Confidence 357888999999999999 6778889999999999998861 3456888888899987432110000 01
Q ss_pred CCc------EEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCc
Q 009172 273 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN 340 (541)
Q Consensus 273 ~Gi------~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~ 340 (541)
.|+ .+..++..|+++|++++++ +++++|+++..+|++|.+.| +++|.++|++||++||+||+|.....
T Consensus 172 ~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~ 251 (434)
T 2epj_A 172 AGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRL 251 (434)
T ss_dssp TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTS
T ss_pred CCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeC
Confidence 243 2455556789999999863 25889999877788999998 99999999999999999999874311
Q ss_pred c-----cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-hcCC--CccHHHHHHHHHhHHHHH--HHH
Q 009172 341 Q-----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTLH--LRV 410 (541)
Q Consensus 341 ~-----~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-~~g~--~~s~~~a~l~l~~l~tl~--~r~ 410 (541)
. .......|++ |++|.+++ | ..+|++++++++++.+..... ..+. ..++..+..+...++.+. ...
T Consensus 252 g~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~~~ 327 (434)
T 2epj_A 252 GLEGAQGYFNIEGDII--VLGKIIGG-G-FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEPVY 327 (434)
T ss_dssp STTHHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSCHH
T ss_pred CcchhhHHhCCCCCee--eecchhcC-C-cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcCHH
Confidence 1 1122346765 78899997 4 347899999888776654211 1222 356667666666666553 234
Q ss_pred HHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHH
Q 009172 411 QQQNSTALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFID 474 (541)
Q Consensus 411 ~~~~~na~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~------------~~~~~~~l~ 474 (541)
++..++.+++.+.|++. +.+.. .++.|.+++|+++.. .....++.+
T Consensus 328 ~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (434)
T 2epj_A 328 SVSREAAKALEEAASEVLDRTGLPYT------------------INRVESMMQLFIGVEEVSNAAQARKADKKFYVKLHE 389 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCEE------------------EEEETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcEE------------------EEEeeeEEEEEEeCCCcccchhccccCHHHHHHHHH
Confidence 55556677777777653 21111 123578999999641 234556777
Q ss_pred HcCCCceeecCC
Q 009172 475 ALKIPYIAPSFG 486 (541)
Q Consensus 475 ~L~~~~iavS~G 486 (541)
.|...++.+..|
T Consensus 390 ~l~~~Gv~v~~~ 401 (434)
T 2epj_A 390 EMLRRGVFIAPS 401 (434)
T ss_dssp HHHHTTEECCSS
T ss_pred HHHHCCeEEecc
Confidence 766556666544
No 202
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.83 E-value=8.1e-19 Score=190.46 Aligned_cols=214 Identities=13% Similarity=0.124 Sum_probs=151.8
Q ss_pred HHHHHHHHHhCCC----cEEEeCCHHHHHHHHHHHhcc--------CC-----C-EEEEcCCCCcchHHHHHhhcccCCc
Q 009172 214 VVEEKMSALEGAE----STVIMASGMSASTVMLLALVP--------AG-----G-HIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 214 ~Le~~LA~l~g~~----~~i~~sSG~~Ai~~al~all~--------~G-----D-~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
++.+++++++|.+ ..+++++|++|+.+++.++.. +| + +|+++.+.|.++...+.. +. .|.
T Consensus 136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~-~g-~g~ 213 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA-LG-FGT 213 (504)
T ss_dssp HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SCG
T ss_pred HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH-cC-CCc
Confidence 3446668888864 467788888999998887642 56 6 799999999887655432 22 243
Q ss_pred -EEEEeCCC-----CHHHHHHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc---
Q 009172 276 -TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ--- 341 (541)
Q Consensus 276 -~v~~vd~~-----dle~Le~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~--- 341 (541)
+++.++.+ |+++|+++|++. ++++|++++|+||+|.+.|+++|+++|+++|+++++|++|+.+...
T Consensus 214 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~ 293 (504)
T 2okj_A 214 DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRK 293 (504)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTT
T ss_pred ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHh
Confidence 67777653 899999998652 3899999999999999999999999999999999999998765432
Q ss_pred --cccc--cCCcEEEECCccccCCCCCceEEEEEeCh-HHHHHHHHH-hhhc-CC-------------------CccHHH
Q 009172 342 --KALS--LGADLVLHSATKFIGGHNDVLAGSISGSG-KLVTQIRNL-HHVL-GG-------------------ALNPNA 395 (541)
Q Consensus 342 --~~l~--~gaDivv~S~sK~lgg~g~v~gG~vv~~~-~li~~l~~~-~~~~-g~-------------------~~s~~~ 395 (541)
..+. .++|+++.|+||+++++.+ .|+++.++ ++++..... .... +. ......
T Consensus 294 ~~~~~~g~~~~D~i~~~~hK~~~~p~~--~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~ 371 (504)
T 2okj_A 294 HRHKLNGIERANSVTWNPHKMMGVLLQ--CSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFK 371 (504)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHH
T ss_pred hHhhcCCcccCCEEEECchhhcCCCcc--eEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHH
Confidence 1122 2689999999999986643 57777665 455542211 1111 10 112444
Q ss_pred HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009172 396 AYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVK 431 (541)
Q Consensus 396 a~l~l~~l--~tl~~r~~~~~~na~~la~~L~~~p~v~ 431 (541)
.|++++.+ +.+...+++..++++++.+.|++.|+++
T Consensus 372 ~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~ 409 (504)
T 2okj_A 372 FWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFE 409 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 55554444 3456667778889999999999887764
No 203
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.83 E-value=2.6e-19 Score=196.69 Aligned_cols=150 Identities=16% Similarity=0.284 Sum_probs=114.1
Q ss_pred cEEEeCCH-HHHHHHHHHH-----hccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-------CCHHHHHHhcc
Q 009172 227 STVIMASG-MSASTVMLLA-----LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-------ADMEGLEAALN 293 (541)
Q Consensus 227 ~~i~~sSG-~~Ai~~al~a-----ll~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~-------~dle~Le~ai~ 293 (541)
+.|++++| ++++.+++.+ ++++||+|++++|+|.++.... .+...|+++..++. .|+++|+++++
T Consensus 166 ~~I~~t~G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~--~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~ 243 (546)
T 2zy4_A 166 VNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIP--ELAQYALEEVAINADPSLNWQYPDSELDKLKD 243 (546)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHH--HSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS
T ss_pred ceEEEECCHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHH--HHcCCCcEEEEEecCcccCCCCCHHHHHHhhC
Confidence 45555555 5999998887 5789999999999999865432 24455777777753 47899998886
Q ss_pred CCCeeEEEEeCCCCCCCcccC---HHHHHHHH--HhCCCEEEEEcCCCCCCc--ccccc--cCCcEEEECCccccCCCCC
Q 009172 294 NNNVSLFFTESPTNPFLRCVD---VKLVSDLC--HKKGAIVCIDGTFATPLN--QKALS--LGADLVLHSATKFIGGHND 364 (541)
Q Consensus 294 ~~~tklV~lesp~NPtG~v~d---i~~Ia~la--~~~gillvvDea~a~~~~--~~~l~--~gaDivv~S~sK~lgg~g~ 364 (541)
+ ++++|++++|+||||.+++ +++|.++| +++|++||+|++|..... ..... .+.++++.|+||.+|.+|
T Consensus 244 ~-~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~G- 321 (546)
T 2zy4_A 244 P-AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATG- 321 (546)
T ss_dssp T-TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGG-
T ss_pred C-CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCC-
Confidence 6 5999999999999999998 55678888 789999999999876432 11111 246799999999998666
Q ss_pred ceEEEEEeChH-HHHHH
Q 009172 365 VLAGSISGSGK-LVTQI 380 (541)
Q Consensus 365 v~gG~vv~~~~-li~~l 380 (541)
...|+++++++ +++++
T Consensus 322 lRiG~~~~~~~~l~~~l 338 (546)
T 2zy4_A 322 WRLGVVAAHQQNVFDLA 338 (546)
T ss_dssp GCEEEEEEESSCHHHHH
T ss_pred cceEEEEECCHHHHHHH
Confidence 34788887764 77665
No 204
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.83 E-value=2.7e-19 Score=191.23 Aligned_cols=239 Identities=14% Similarity=0.115 Sum_probs=153.0
Q ss_pred CCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc----CC----CEEEEcCCCCcchHHHHHhhcc---
Q 009172 205 GRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP----AG----GHIVTTTDCYRKTRIFIETVLP--- 271 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~----~G----D~VIv~~~~y~~~~~~~~~~l~--- 271 (541)
.++.++...+|+++|+++.+. +.+++++||++|+..+++.+.. +| |+||+.++.|++........-.
T Consensus 82 ~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~ 161 (448)
T 3dod_A 82 LGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIEL 161 (448)
T ss_dssp SSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------
T ss_pred cccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCcc
Confidence 457788999999999999853 6788889999999999988765 45 9999999999874422111000
Q ss_pred ------cCCcEEEEeCCC----------------CHHHHHHhcc--CCCeeEEEEeCCC-CCCCcccC----HHHHHHHH
Q 009172 272 ------KMGITATVIDPA----------------DMEGLEAALN--NNNVSLFFTESPT-NPFLRCVD----VKLVSDLC 322 (541)
Q Consensus 272 ------~~Gi~v~~vd~~----------------dle~Le~ai~--~~~tklV~lesp~-NPtG~v~d----i~~Ia~la 322 (541)
.....+..++.. |+++|+++++ ++++++|++|.++ |++|.+.+ +++|.++|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~ 241 (448)
T 3dod_A 162 FHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELC 241 (448)
T ss_dssp -----------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHH
T ss_pred ccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHH
Confidence 001122333332 3788999886 2358899999988 99998776 99999999
Q ss_pred HhCCCEEEEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHH-------HhhhcCC
Q 009172 323 HKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-------LHHVLGG 389 (541)
Q Consensus 323 ~~~gillvvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~-------~~~~~g~ 389 (541)
++||++||+||++.... .........|++ +++|.+++ |-...|++++++++++.+.. .......
T Consensus 242 ~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~--t~sK~l~~-G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~ 318 (448)
T 3dod_A 242 TTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLM--AAGKGITG-GYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSY 318 (448)
T ss_dssp HHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-TSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTT
T ss_pred HHhCCEEEEeccccCCCcccchhhhhhcCCCCCEE--EecccccC-CcCceEEEEECHHHHHHhhhccccCCcccccCCC
Confidence 99999999999976321 112222335665 47799986 32246888899888887654 2222223
Q ss_pred CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHh---CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 390 ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~~L~~---~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
..++..+.+++..++.+.. ..++..++.+++.+.|.+ ++.+..+ ++.|.++++++..
T Consensus 319 ~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------------~~~g~~~~~~~~~ 380 (448)
T 3dod_A 319 TGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDI------------------RQLGFMCGAELVR 380 (448)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEECS
T ss_pred CcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcCCCeEEE------------------EeeeEEEEEEEcc
Confidence 4467777776667765432 244555666666666654 3322211 2357799999864
No 205
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.82 E-value=3.3e-19 Score=189.05 Aligned_cols=258 Identities=14% Similarity=0.134 Sum_probs=169.3
Q ss_pred CCchhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHH----------hhcccC
Q 009172 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIE----------TVLPKM 273 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g-~~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~----------~~l~~~ 273 (541)
|+++...+|+++|+++++ .+.+++++||++|+..+++... ..+++||+.++.|++...... ......
T Consensus 90 ~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 169 (429)
T 4e77_A 90 APTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSP 169 (429)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC------------------CCCT
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcC
Confidence 678999999999999985 5678888999999999987532 457899999999988543110 000011
Q ss_pred C------cEEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCC---
Q 009172 274 G------ITATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP--- 338 (541)
Q Consensus 274 G------i~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~--- 338 (541)
+ ..+..++..|+++|++++++ +++++|+++..++++|.+.+ +++|.++|++||++||+||+|...
T Consensus 170 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g 249 (429)
T 4e77_A 170 GVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVA 249 (429)
T ss_dssp TSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTB
T ss_pred CCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccC
Confidence 1 23455666799999999863 24788888666666788887 999999999999999999998733
Q ss_pred Cc--ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh---hhcCCCccHHHHHHHHHhHHHH--HHHHH
Q 009172 339 LN--QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH---HVLGGALNPNAAYLIIRGMKTL--HLRVQ 411 (541)
Q Consensus 339 ~~--~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~---~~~g~~~s~~~a~l~l~~l~tl--~~r~~ 411 (541)
.. ........|++ |++|.+++ | ..+|++++++++++.+.... .......++..+..+...++.+ +...+
T Consensus 250 ~~~~~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 325 (429)
T 4e77_A 250 LAGAQDYYHVIPDLT--CLGKIIGG-G-MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYE 325 (429)
T ss_dssp TTCHHHHTTCCCSEE--EEEGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHH
T ss_pred cchHHHhcCCCCCee--eecccccC-C-CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 11 12222334665 68899985 3 45789999998887765421 1112245677777766666654 23345
Q ss_pred HHHHHHHHHHHHHHh----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------------HHHHHHHHH
Q 009172 412 QQNSTALRMAEILEA----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------------LTATIKFID 474 (541)
Q Consensus 412 ~~~~na~~la~~L~~----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-------------~~~~~~~l~ 474 (541)
+..++.+++.+.|++ ++.+.. .++.|.+++|++++. .....++.+
T Consensus 326 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (429)
T 4e77_A 326 TLTELTDSLATGLRHAAKEENIPLV------------------VNHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFH 387 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceE------------------EEEeeeEEEEEEccCcccccccccccccHHHHHHHHH
Confidence 555666666666654 222111 134678999998643 133456666
Q ss_pred HcCCCceeecCC
Q 009172 475 ALKIPYIAPSFG 486 (541)
Q Consensus 475 ~L~~~~iavS~G 486 (541)
.|...|+.+..+
T Consensus 388 ~l~~~Gi~v~~~ 399 (429)
T 4e77_A 388 LMLEEGVYLAPS 399 (429)
T ss_dssp HHHHTTEECCSS
T ss_pred HHHHCCeEEeec
Confidence 665556665544
No 206
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.82 E-value=7.6e-19 Score=187.18 Aligned_cols=279 Identities=15% Similarity=0.166 Sum_probs=178.3
Q ss_pred hhHHHHHHHHHHHhCCCcE--EEeCCHHHHHHHHHHH-hccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 210 PTTVVVEEKMSALEGAEST--VIMASGMSASTVMLLA-LVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 210 p~~~~Le~~LA~l~g~~~~--i~~sSG~~Ai~~al~a-ll~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
+...++++.+++++|.+.. +++++|++++.+++.+ .+++||+|+++.+.|+++...+...++..|+++++++..
T Consensus 108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~~~~~ 187 (438)
T 1wyu_A 108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR 187 (438)
T ss_dssp HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB
T ss_pred HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcCcCCc
Confidence 4577899999999998643 5555666444444433 357899999999999998877766566789999988742
Q ss_pred -CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcC-CCCCCcccccccCCcEEEECCcc----
Q 009172 284 -DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT-FATPLNQKALSLGADLVLHSATK---- 357 (541)
Q Consensus 284 -dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea-~a~~~~~~~l~~gaDivv~S~sK---- 357 (541)
|+++ +++ +|++|++++| ||+|.+.|+++|.++||++|+++|+|.. .+.+....+..+|+|+++.|.+|
T Consensus 188 ~d~~~----i~~-~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~~~~g~D~~~~s~kk~~~~ 261 (438)
T 1wyu_A 188 TPLPE----VGE-EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLP 261 (438)
T ss_dssp CCCCC----CCT-TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCC
T ss_pred cCHHH----hCC-CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCCccCCCCEEEECCcccCCC
Confidence 2333 666 5999999999 9999999999999999999999997743 22222223356789999999554
Q ss_pred -ccCCCCCceEEEEEeChHHHHHHHHH-------------------------hhhcCCC-c---cHHHH---HHHHHhH-
Q 009172 358 -FIGGHNDVLAGSISGSGKLVTQIRNL-------------------------HHVLGGA-L---NPNAA---YLIIRGM- 403 (541)
Q Consensus 358 -~lgg~g~v~gG~vv~~~~li~~l~~~-------------------------~~~~g~~-~---s~~~a---~l~l~~l- 403 (541)
+++|++ +|++++++++++.+... +...+.. . ....+ +..+..+
T Consensus 262 ~~~~Gp~---~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~ 338 (438)
T 1wyu_A 262 MGFGGPH---FGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALG 338 (438)
T ss_dssp CGGGCSC---CEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHH
T ss_pred ccCCCCC---eeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHHHHHHHhC
Confidence 344443 68999988776554210 1111211 1 22222 1112222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCcee
Q 009172 404 -KTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIA 482 (541)
Q Consensus 404 -~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~ia 482 (541)
+.+....++..++++++.+.|++.+++. +..|. + .-.++.|.++.+ ...+.+.|...++.
T Consensus 339 ~~g~~~~~~~~~~~~~~l~~~L~~~~g~~-~~~~~----~-----------~~~~~~~~~~~~---~~~~~~~L~~~gi~ 399 (438)
T 1wyu_A 339 PEGLREVALKSVEMAHKLHALLLEVPGVR-PFTPK----P-----------FFNEFALALPKD---PEAVRRALAERGFH 399 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTCE-ECSCS----S-----------BCSEEEEECSSC---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeE-ECCCC----C-----------eEEEEEEeCCCC---HHHHHHHHHHCCce
Confidence 2244455667788889999998877664 32221 1 123455655322 23444444433544
Q ss_pred e--cCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 483 P--SFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 483 v--S~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
+ ..|.. ..++.||||++..++++.++.+.++|++
T Consensus 400 v~~~~~~~------------------------~~~~~lRis~~~~~t~edi~~~~~~l~~ 435 (438)
T 1wyu_A 400 GATPVPRE------------------------YGENLALFAATELHEEEDLLALREALKE 435 (438)
T ss_dssp CCEECCTT------------------------SCSSEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred eccccccc------------------------cCCCeEEEEecccCCHHHHHHHHHHHHH
Confidence 4 22211 0257899999977777777777777654
No 207
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.82 E-value=1.3e-18 Score=186.26 Aligned_cols=291 Identities=14% Similarity=0.106 Sum_probs=184.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHhh-------
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETV------- 269 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~~------- 269 (541)
+.+.++.++...+|+++|+++.+. +.+++++||++|+.++++.... .+++||+.++.|++........
T Consensus 96 ~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~ 175 (451)
T 3oks_A 96 TCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPY 175 (451)
T ss_dssp CTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTT
T ss_pred ccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCccc
Confidence 445567889999999999999862 4688899999999999976653 4589999999998854332111
Q ss_pred ---cccCCcEEEEeCCC------------------CHHHHHHhc----cCCCeeEEEEeCCCCCCCcccC----HHHHHH
Q 009172 270 ---LPKMGITATVIDPA------------------DMEGLEAAL----NNNNVSLFFTESPTNPFLRCVD----VKLVSD 320 (541)
Q Consensus 270 ---l~~~Gi~v~~vd~~------------------dle~Le~ai----~~~~tklV~lesp~NPtG~v~d----i~~Ia~ 320 (541)
.......+..++.. +++.+++.+ .++++++|++|..++..|.+.+ +++|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~ 255 (451)
T 3oks_A 176 KDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLD 255 (451)
T ss_dssp TTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHH
T ss_pred ccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHH
Confidence 01111234444432 233333333 3335778888776666677776 999999
Q ss_pred HHHhCCCEEEEEcCCCCCC------cccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHH
Q 009172 321 LCHKKGAIVCIDGTFATPL------NQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPN 394 (541)
Q Consensus 321 la~~~gillvvDea~a~~~------~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~ 394 (541)
+|++||++||+||+|.... .........|++ |++|.+++ | ...|++++++++++.+...........++.
T Consensus 256 l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~-G-~~iG~v~~~~~~~~~~~~~~~~~t~~~~~~ 331 (451)
T 3oks_A 256 WCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLI--VTAKGIAG-G-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPI 331 (451)
T ss_dssp HHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTCSCTTSBCCSSSSCHH
T ss_pred HHHHcCCEEEEEecccCCCccccchhhhhcCCCCCee--eehhhhhC-C-cceEEEEECHHHHhhhcCCCcCCCCCCCHH
Confidence 9999999999999976421 122223345666 67899987 4 456788889888877654433333445677
Q ss_pred HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC----
Q 009172 395 AAYLIIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---- 464 (541)
Q Consensus 395 ~a~l~l~~l~tl~~--r~~~~~~na~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g---- 464 (541)
.+++++..++.+.. ..++..++.+++.+.|. .++.+..+ ++.|.+++|++..
T Consensus 332 ~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~G~~~~~~~~~~~~~ 393 (451)
T 3oks_A 332 ACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDV------------------RGRGAMIAMELVKAGTT 393 (451)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE------------------EEETTEEEEEEBSTTSC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EEeeEEEEEEEecCccC
Confidence 77776666665432 23444455555555554 34443222 3357899999842
Q ss_pred --CHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHH
Q 009172 465 --DLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQAL 538 (541)
Q Consensus 465 --~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL 538 (541)
.......+.+.+...++.+..++ ...+.+||++... +.++.++.|.++|
T Consensus 394 ~~~~~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 448 (451)
T 3oks_A 394 EPDADLTKALCAGAHAAGVIVLSCG-------------------------TYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448 (451)
T ss_dssp CBCHHHHHHHHHHHHHTTEECEEEC-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCcEEecCC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 23456667766655565443321 1246899987654 4455555666655
Q ss_pred h
Q 009172 539 H 539 (541)
Q Consensus 539 ~ 539 (541)
+
T Consensus 449 ~ 449 (451)
T 3oks_A 449 R 449 (451)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.82 E-value=3.8e-19 Score=202.07 Aligned_cols=218 Identities=13% Similarity=0.064 Sum_probs=157.5
Q ss_pred CCCCCchhHHHHHHHHHHHhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 204 YGRYGNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 204 Y~R~~~p~~~~Le~~LA~l~g~~~~i~~sSG~-~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
+-..+.....++++.+++++|.+..+++++|+ +|+.+++.+++++||+|+++.++|.+....+ ...|+++++++.
T Consensus 199 ~L~~~~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~----~~~G~~~v~v~~ 274 (755)
T 2vyc_A 199 SLLDHTGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGL----MLTGAKPVYMVP 274 (755)
T ss_dssp CTTTTCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHH----HHHCCEEEEECC
T ss_pred ccccCccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHH----HHcCCEEEEEeC
Confidence 33345567889999999999999888899997 8899999999999999999999999876543 335888887753
Q ss_pred C---------------CHHHHHHhccCC-Cee--------EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCC
Q 009172 283 A---------------DMEGLEAALNNN-NVS--------LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP 338 (541)
Q Consensus 283 ~---------------dle~Le~ai~~~-~tk--------lV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~ 338 (541)
. |+++|+++++++ +++ +|++++| ||+|.+.|+++|+++|+++|++|++|++|+..
T Consensus 275 ~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~ 353 (755)
T 2vyc_A 275 SRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353 (755)
T ss_dssp CBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTT
T ss_pred CCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchh
Confidence 1 799999998642 244 8999998 69999999999999999999999999998754
Q ss_pred Ccc-------cccccC--CcE------EEECCccccCCCCCceEEEEEeChH---H-HHHHHHHhhhc-CCCccHHHHHH
Q 009172 339 LNQ-------KALSLG--ADL------VLHSATKFIGGHNDVLAGSISGSGK---L-VTQIRNLHHVL-GGALNPNAAYL 398 (541)
Q Consensus 339 ~~~-------~~l~~g--aDi------vv~S~sK~lgg~g~v~gG~vv~~~~---l-i~~l~~~~~~~-g~~~s~~~a~l 398 (541)
... .++ .| +|+ ++.|+||+++|+. .+|+++.+++ + ..++......+ .++++......
T Consensus 354 ~~~~~~~~~~~~~-~g~~aD~~~~~~iv~~S~hK~L~g~~--~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaa 430 (755)
T 2vyc_A 354 ARFNPIYADHYAM-RGEPGDHNGPTVFATHSTHKLLNALS--QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICAS 430 (755)
T ss_dssp GGGCGGGTTSSSS-CSCCCCCSSBEEEEEEETTTSSSCCT--TCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHH
T ss_pred cccCcccCCcchh-cCCcCCccCCCeEEEECccccccCcC--CeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHH
Confidence 322 222 56 776 9999999999875 3677766443 2 23333332222 23333332222
Q ss_pred HHHhHHH-----HHHHHHHHHHHHHHHHHHHHhCCC
Q 009172 399 IIRGMKT-----LHLRVQQQNSTALRMAEILEAHPK 429 (541)
Q Consensus 399 ~l~~l~t-----l~~r~~~~~~na~~la~~L~~~p~ 429 (541)
+..+++. ...++++..++++++.+.|++.++
T Consensus 431 l~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~ 466 (755)
T 2vyc_A 431 NDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYK 466 (755)
T ss_dssp HHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2222221 345667777888888888876544
No 209
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.82 E-value=3.7e-19 Score=192.81 Aligned_cols=241 Identities=12% Similarity=0.150 Sum_probs=158.2
Q ss_pred CCCCCCCCchhHHHHH----HHHHHHhCC---CcEEEeCCHHHHHHHHHHHh----c---------cC------CC-EEE
Q 009172 201 SFEYGRYGNPTTVVVE----EKMSALEGA---ESTVIMASGMSASTVMLLAL----V---------PA------GG-HIV 253 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le----~~LA~l~g~---~~~i~~sSG~~Ai~~al~al----l---------~~------GD-~VI 253 (541)
.+.|+. .|...++| ++|++++|. +..+++++|++|+.+++.+. + ++ || +|+
T Consensus 129 ~~~~~~--~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~ 206 (497)
T 2qma_A 129 MDSWDQ--ASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIV 206 (497)
T ss_dssp TTCGGG--CHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEE
T ss_pred ccchhh--ChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEE
Confidence 444543 34555554 459999987 45778888889999888763 3 13 46 899
Q ss_pred EcCCCCcchHHHHHhhcccCCc-EEEEeCCC-----CHHHHHHhccCC---Cee--EEEEeCCCCCCCcccCHHHHHHHH
Q 009172 254 TTTDCYRKTRIFIETVLPKMGI-TATVIDPA-----DMEGLEAALNNN---NVS--LFFTESPTNPFLRCVDVKLVSDLC 322 (541)
Q Consensus 254 v~~~~y~~~~~~~~~~l~~~Gi-~v~~vd~~-----dle~Le~ai~~~---~tk--lV~lesp~NPtG~v~di~~Ia~la 322 (541)
++...|.+....+.. +. .|. +++.++.+ |+++|+++|+++ .++ +|++++++|++|.+.|+++|+++|
T Consensus 207 ~s~~~h~s~~~~~~~-~g-~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~ 284 (497)
T 2qma_A 207 CSKKSHFTVQKSASW-MG-LGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMA 284 (497)
T ss_dssp EETTSCTHHHHHHHH-TT-SCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHH
T ss_pred ECCCchHHHHHHHHH-cC-CCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHH
Confidence 999999887654432 22 143 56777654 789999888642 134 888899999999999999999999
Q ss_pred HhCCCEEEEEcCCCCCCcccc-----ccc-CCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhc--CC----
Q 009172 323 HKKGAIVCIDGTFATPLNQKA-----LSL-GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVL--GG---- 389 (541)
Q Consensus 323 ~~~gillvvDea~a~~~~~~~-----l~~-gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~--g~---- 389 (541)
++||+++++|++|+.+....+ ... ++|+++.|+||+++++.+ .|+++. ++..++.+....... +.
T Consensus 285 ~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~--~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~ 362 (497)
T 2qma_A 285 VKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS--CGALLVNDKSNFKFLLHHADYLNREHDELP 362 (497)
T ss_dssp HHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS--CEEEEESCGGGGGGGCC-------------
T ss_pred HHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc--eEEEEEeCHHHHHHhcCCchhcCCccccCC
Confidence 999999999999876543211 112 679999999998887653 355555 444333321100000 00
Q ss_pred -----C------ccHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCccc
Q 009172 390 -----A------LNPNAAYLIIRG--MKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456 (541)
Q Consensus 390 -----~------~s~~~a~l~l~~--l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~ 456 (541)
. ......|.+++. .+.+..++++..++++++.+.|++.+.++-+..| .++
T Consensus 363 ~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-----------------~~~ 425 (497)
T 2qma_A 363 NLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEP-----------------SLS 425 (497)
T ss_dssp -------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSCC-----------------SSS
T ss_pred CccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcCC-----------------Cce
Confidence 0 012233434432 3455667778888999999999988775422212 246
Q ss_pred EEEEEEcC
Q 009172 457 VVSFEVDG 464 (541)
Q Consensus 457 ~vsf~l~g 464 (541)
+++|.+.+
T Consensus 426 ~v~f~~~~ 433 (497)
T 2qma_A 426 TVLFRATH 433 (497)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcC
Confidence 89999864
No 210
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.82 E-value=2.6e-18 Score=187.16 Aligned_cols=216 Identities=16% Similarity=0.186 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhc-------c-CCC------EEEEcCCCCcchHHHHHhhcccCCc
Q 009172 212 TVVVEEKMSALEGAE--STVIMASGMSASTVMLLALV-------P-AGG------HIVTTTDCYRKTRIFIETVLPKMGI 275 (541)
Q Consensus 212 ~~~Le~~LA~l~g~~--~~i~~sSG~~Ai~~al~all-------~-~GD------~VIv~~~~y~~~~~~~~~~l~~~Gi 275 (541)
.++++++|++++|.+ ..+++++|++|+.+++.++. + +|| +|+++...|.++...+.. +. .|.
T Consensus 150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~-~g-~g~ 227 (515)
T 2jis_A 150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF-LG-LGT 227 (515)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH-TT-SCG
T ss_pred HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH-cC-CCC
Confidence 455677899999974 57788888999988887753 2 576 899999999887655432 21 133
Q ss_pred -EEEEeCCC-----CHHHHHHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccc-
Q 009172 276 -TATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKA- 343 (541)
Q Consensus 276 -~v~~vd~~-----dle~Le~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~- 343 (541)
+++.++.+ |+++|+++|++. ++++|++++|+|++|.+.|+++|+++|+++|+++|+|++|+.+....+
T Consensus 228 ~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~ 307 (515)
T 2jis_A 228 DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQT 307 (515)
T ss_dssp GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTT
T ss_pred CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChh
Confidence 67777643 799999998641 389999999999999999999999999999999999999876543221
Q ss_pred ----c-c-cCCcEEEECCccccCCCCCceEEEEEeChH--HHHHHH----HHhhh-----------------cCCCccHH
Q 009172 344 ----L-S-LGADLVLHSATKFIGGHNDVLAGSISGSGK--LVTQIR----NLHHV-----------------LGGALNPN 394 (541)
Q Consensus 344 ----l-~-~gaDivv~S~sK~lgg~g~v~gG~vv~~~~--li~~l~----~~~~~-----------------~g~~~s~~ 394 (541)
+ . .++|+++.|+||+++++.+ .|+++.+++ ++++.. .+... .+......
T Consensus 308 ~~~~~~g~~~aD~v~~s~hK~l~~p~g--~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al 385 (515)
T 2jis_A 308 HRHLLDGIQRADSVAWNPHKLLAAGLQ--CSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCL 385 (515)
T ss_dssp TGGGGTTGGGCSEEEECTTSTTCCCSC--CEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHH
T ss_pred hHhhcCCCccCCEEEECcccccCCCCC--eeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHH
Confidence 2 2 2789999999999986543 477776654 655421 11100 00011234
Q ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHhCCCce
Q 009172 395 AAYLIIRGM--KTLHLRVQQQNSTALRMAEILEAHPKVK 431 (541)
Q Consensus 395 ~a~l~l~~l--~tl~~r~~~~~~na~~la~~L~~~p~v~ 431 (541)
..|++++.+ +.+....++..++++++.+.|++.|+++
T Consensus 386 ~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~ 424 (515)
T 2jis_A 386 KLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFE 424 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 444444433 3455667778889999999999887764
No 211
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.81 E-value=8.9e-19 Score=187.20 Aligned_cols=235 Identities=17% Similarity=0.156 Sum_probs=152.1
Q ss_pred CCchhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHH---hccCCCEEEEcCCCCcchHHHHHhhc------c-cCCc
Q 009172 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA---LVPAGGHIVTTTDCYRKTRIFIETVL------P-KMGI 275 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~-g~~~~i~~sSG~~Ai~~al~a---ll~~GD~VIv~~~~y~~~~~~~~~~l------~-~~Gi 275 (541)
+.++..+++.+.++++. +.+.+++++||++|+.++++. +.+ +++||+.++.|++......... . ..|+
T Consensus 94 ~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~ 172 (453)
T 2cy8_A 94 ASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV 172 (453)
T ss_dssp SSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHC-CCEEEEECC-------------------------
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC
Confidence 56778888888888887 456788889999999999887 554 5788888899987443221100 0 1233
Q ss_pred ------EEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCcc--
Q 009172 276 ------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ-- 341 (541)
Q Consensus 276 ------~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~~-- 341 (541)
.+..++..|+++|++++++ .++++|++++++|++|.+++ +++|.++|++||++||+||++......
T Consensus 173 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~ 252 (453)
T 2cy8_A 173 LPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNH 252 (453)
T ss_dssp ---CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTT
T ss_pred CccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCch
Confidence 2445566799999999873 24889988777788999888 999999999999999999998743111
Q ss_pred ---cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHH---H--hhhcCCCccHHHHHHHHHhHHH-H-HHHHH
Q 009172 342 ---KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN---L--HHVLGGALNPNAAYLIIRGMKT-L-HLRVQ 411 (541)
Q Consensus 342 ---~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~---~--~~~~g~~~s~~~a~l~l~~l~t-l-~~r~~ 411 (541)
.......|++ |++|.+++ | ..+|++++++++++.+.. . ........++..++++...++. + +...+
T Consensus 253 ~~~~~~~~~~di~--s~sK~l~~-G-~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~~~~~~~ 328 (453)
T 2cy8_A 253 GMQALLDVQPDLT--CLAKASAG-G-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCA 328 (453)
T ss_dssp HHHHHHTCCCSEE--EEEGGGGT-T-SSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhHHhCCCCcEE--EEChhhhC-C-cceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHhhhhHHH
Confidence 1122345765 78899996 3 347899999888776643 1 1111223567777766666666 4 33445
Q ss_pred HHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 412 QQNSTALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 412 ~~~~na~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
+..++.+++.+.|++. +.+.. .++.|.+++|+++.
T Consensus 329 ~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~i~~~~ 367 (453)
T 2cy8_A 329 KINDLGQFAREAMNHLFARKGLNWL------------------AYGRFSGFHLMPGL 367 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEE------------------EECCTTEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCcEE------------------EEEeeeEEEEEEec
Confidence 5566677777766542 22111 12367899999974
No 212
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.81 E-value=3.3e-19 Score=190.66 Aligned_cols=296 Identities=17% Similarity=0.125 Sum_probs=175.7
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccC-----C----CEEEEcCCCCcchHHHHHhhcccCCcEEE
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPA-----G----GHIVTTTDCYRKTRIFIETVLPKMGITAT 278 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~-----G----D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~ 278 (541)
..+...+|+++|++++|.+++++++||++|+.+++.+++++ | |+|++. ..|..++..... ..|..+.
T Consensus 72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~~---~~~~~~~ 147 (467)
T 2oqx_A 72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFS-NYFFDTTQGHSQ---INGCTVR 147 (467)
T ss_dssp SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCCTTTCEEEE-SSCCHHHHHHHH---HTTCEEE
T ss_pred cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCCccceEEec-ccccccchhhhh---ccCccee
Confidence 35678899999999999988999999999999999998888 8 998876 455443322211 1122221
Q ss_pred E------eC---------CCCHHHHHHhccC---CCeeEEEEeCCCCCC-CcccC---HHHHHHHHHhCCCEEEEEcCCC
Q 009172 279 V------ID---------PADMEGLEAALNN---NNVSLFFTESPTNPF-LRCVD---VKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 279 ~------vd---------~~dle~Le~ai~~---~~tklV~lesp~NPt-G~v~d---i~~Ia~la~~~gillvvDea~a 336 (541)
. ++ ..|+++|++++++ .+|++|++++|+||+ |.+++ +++|.++|++||++||+|+++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~ 227 (467)
T 2oqx_A 148 NVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF 227 (467)
T ss_dssp ECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred eccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence 1 11 1289999999973 258999999999998 88765 7799999999999999996643
Q ss_pred C-----------CC-cccc--cc----cCCcEEEECCccccCCCCCceEEEEEeChH-HHHH---HHHHhhhcC-----C
Q 009172 337 T-----------PL-NQKA--LS----LGADLVLHSATKFIGGHNDVLAGSISGSGK-LVTQ---IRNLHHVLG-----G 389 (541)
Q Consensus 337 ~-----------~~-~~~~--l~----~gaDivv~S~sK~lgg~g~v~gG~vv~~~~-li~~---l~~~~~~~g-----~ 389 (541)
. .. .... +. .++|+++.|+||.++.+ +||+++++++ +++. ++......+ +
T Consensus 228 ~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (467)
T 2oqx_A 228 AENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVP---MGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYG 304 (467)
T ss_dssp HHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCS---SCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCC
T ss_pred hhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCC---CceEEEecChhHHHHHHHHHHhhhccCCccccc
Confidence 2 11 1111 11 24788899999999855 3688888766 4443 333221111 1
Q ss_pred CccHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc----
Q 009172 390 ALNPNAAYLIIRGMKTL--HLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD---- 463 (541)
Q Consensus 390 ~~s~~~a~l~l~~l~tl--~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~---- 463 (541)
.........+..+++.. ..++++..++++.+.+.|++. ++..+ |. .|.++++.++
T Consensus 305 ~~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~--~~----------------~~~~~~~~~~~~~~ 365 (467)
T 2oqx_A 305 GLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI-GVVCQ--QA----------------GGHAAFVDAGKLLP 365 (467)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT-TCCEE--EE----------------CSSCEEEEHHHHST
T ss_pred chhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC-CCeee--cC----------------CceEEEEechhhcc
Confidence 12222221122222322 234555667888899999876 44322 31 2456777763
Q ss_pred C-CHHH--HHHHHHHc-CCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC-CH----HHHHHHH
Q 009172 464 G-DLTA--TIKFIDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE-DF----EDLKADV 534 (541)
Q Consensus 464 g-~~~~--~~~~l~~L-~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E-d~----edli~dL 534 (541)
+ +... ...+.+.| ...++.++.|+.+.....|. +. .......+.|||+++.. .+ +.+++.|
T Consensus 366 ~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~---~g-------~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l 435 (467)
T 2oqx_A 366 HIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK---TG-------KQLPCPAELLRLTIPRATYTQTHMDFIIEAF 435 (467)
T ss_dssp TSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT---TC-------SBCCCSCCEEEECCCTTTSCHHHHHHHHHHH
T ss_pred cCCcccccHHHHHHHHHHhcCceeccccccccccccc---cc-------ccccCccCeEEEEecCCCCCHHHHHHHHHHH
Confidence 1 1111 34455555 55567766544211100010 00 00001247999999976 44 4444455
Q ss_pred HHHHh
Q 009172 535 LQALH 539 (541)
Q Consensus 535 ~~AL~ 539 (541)
.++++
T Consensus 436 ~~~l~ 440 (467)
T 2oqx_A 436 KHVKE 440 (467)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
No 213
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.81 E-value=2.9e-18 Score=183.81 Aligned_cols=292 Identities=12% Similarity=0.106 Sum_probs=183.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHhhcc----
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETVLP---- 271 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~~~l~---- 271 (541)
.+.+.++.++...+|+++|+++.+. +.+++++||++|+..+++... ..+++||+.++.|++........-.
T Consensus 98 ~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~ 177 (453)
T 4ffc_A 98 HTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMP 177 (453)
T ss_dssp CCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTT
T ss_pred ccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcc
Confidence 3455678889999999999999863 468888999999999997654 3458999999999885433221110
Q ss_pred ------cCCcEEEEeCCC----C-------------HHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHh
Q 009172 272 ------KMGITATVIDPA----D-------------MEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHK 324 (541)
Q Consensus 272 ------~~Gi~v~~vd~~----d-------------le~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~ 324 (541)
.....+..++.. | ++.|++++.++++++|++|..++..|.+.+ +++|.++|++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~ 257 (453)
T 4ffc_A 178 YKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE 257 (453)
T ss_dssp TTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHH
T ss_pred cccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHH
Confidence 111133444322 2 366777775544667777655555566666 8999999999
Q ss_pred CCCEEEEEcCCCCCCc------ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHH
Q 009172 325 KGAIVCIDGTFATPLN------QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYL 398 (541)
Q Consensus 325 ~gillvvDea~a~~~~------~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l 398 (541)
||++||+||+|..... ........|++ +++|.+++ | ...|++++++++++.+...........++..+..
T Consensus 258 ~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~--t~sK~~~~-G-~~~G~~~~~~~i~~~~~~~~~~~t~~~~~~~~aa 333 (453)
T 4ffc_A 258 NGVVFIADEVQTGFARTGAWFASEHEGIVPDIV--TMAKGIAG-G-MPLSAVTGRAELMDAVYAGGLGGTYGGNPVTCAA 333 (453)
T ss_dssp HTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT-T-SSCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHH
T ss_pred cCCEEEEecCccCCCcccccchhhhcCCCcchH--hhhhhhcC-C-cCeEEEEECHHHHhhhcccCcCCCCCcCHHHHHH
Confidence 9999999999764211 11122234555 57899987 4 4568888898888776644332333456777766
Q ss_pred HHHhHHHHHH--HHHHHHHHHHHHHHHHH----hCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------CH
Q 009172 399 IIRGMKTLHL--RVQQQNSTALRMAEILE----AHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DL 466 (541)
Q Consensus 399 ~l~~l~tl~~--r~~~~~~na~~la~~L~----~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g------~~ 466 (541)
++..++.+.. ..++..++.+++.+.|+ .++.+..+ ++.|.+++|++.. ..
T Consensus 334 a~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~ 395 (453)
T 4ffc_A 334 AVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEV------------------RGRGAMLAIEIVKPGTLEPDA 395 (453)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEE------------------EEETTEEEEEEBCTTSCCBCH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEE------------------EeeceEEEEEEecCcccCCCH
Confidence 6666664322 23444445555555444 34443222 2357899999842 23
Q ss_pred HHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHHHHHHh
Q 009172 467 TATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADVLQALH 539 (541)
Q Consensus 467 ~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL~~AL~ 539 (541)
....++.+.+...++.+..++ ...+.+||++..- +.++.++.|.++|+
T Consensus 396 ~~~~~~~~~l~~~Gv~v~~~~-------------------------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~ 447 (453)
T 4ffc_A 396 ALTKSIAAEALSQGVLILTCG-------------------------TFGNVIRLLPPLVIGDDLLDEGITALSDIIR 447 (453)
T ss_dssp HHHHHHHHHHHHTTEECCEEC-------------------------TTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEecCC-------------------------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 456667766655565544321 1246899987654 44555666666654
No 214
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.81 E-value=1.1e-18 Score=186.94 Aligned_cols=281 Identities=14% Similarity=0.106 Sum_probs=178.6
Q ss_pred CCCCchhHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhc---c-----------CCCEEEEcCCCCcchHHHH-
Q 009172 205 GRYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV---P-----------AGGHIVTTTDCYRKTRIFI- 266 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g---~~~~i~~sSG~~Ai~~al~all---~-----------~GD~VIv~~~~y~~~~~~~- 266 (541)
.+|.++...+++++|+++++ .+++++++||++|+..++..+. + +||+||+.++.|++.....
T Consensus 96 ~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~ 175 (449)
T 2cjg_A 96 SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTL 175 (449)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGG
T ss_pred cccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchh
Confidence 46788889999999999985 3567888889999999987542 2 2899999999998743211
Q ss_pred ---------HhhcccCCcEEEEeCCCC--H-------------HHHHHhcc--CCCeeEEEEeCCCCCCCcccC----HH
Q 009172 267 ---------ETVLPKMGITATVIDPAD--M-------------EGLEAALN--NNNVSLFFTESPTNPFLRCVD----VK 316 (541)
Q Consensus 267 ---------~~~l~~~Gi~v~~vd~~d--l-------------e~Le~ai~--~~~tklV~lesp~NPtG~v~d----i~ 316 (541)
+.........+.+++..| . ++|+++++ ..++++|++++++||+|.+.+ ++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~ 255 (449)
T 2cjg_A 176 SLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255 (449)
T ss_dssp GTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHH
T ss_pred hhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHH
Confidence 001111112455555544 2 34888885 135899999888899998777 99
Q ss_pred HHHHHHHhCCCEEEEEcCCCCC-Cc-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHH-----Hhh
Q 009172 317 LVSDLCHKKGAIVCIDGTFATP-LN-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRN-----LHH 385 (541)
Q Consensus 317 ~Ia~la~~~gillvvDea~a~~-~~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~-----~~~ 385 (541)
+|.++|++||++||+||+|... .. ........|++ +++|.+ + .|++++++++++.+.. ...
T Consensus 256 ~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l--~----iG~~~~~~~~~~~l~~~~~~~~~~ 327 (449)
T 2cjg_A 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIV--AFGKKT--Q----VCGVMAGRRVDEVADNVFAVPSRL 327 (449)
T ss_dssp HHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGG--S----SEEEEECGGGGGSTTCTTTSTTSS
T ss_pred HHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEE--EecCcc--c----EEEEEECHHHhhhhhhcccCCccc
Confidence 9999999999999999998742 11 12223346766 577998 2 4677788887765321 111
Q ss_pred hcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh----CCC-ceEEeCCCCCCCchhhhHhhhcCCcccEE
Q 009172 386 VLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA----HPK-VKRVHYPGLKSHPEHHIATQQMTGFGGVV 458 (541)
Q Consensus 386 ~~g~~~s~~~a~l~l~~l~tl~--~r~~~~~~na~~la~~L~~----~p~-v~~V~~Pgl~s~p~~~l~~~~~~g~g~~v 458 (541)
......++..+..+...++.+. ...++..++.+++.+.|++ ++. +..+ ++.|+++
T Consensus 328 ~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~------------------~~~g~~~ 389 (449)
T 2cjg_A 328 NSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDP------------------RGRGLMC 389 (449)
T ss_dssp CCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEE------------------EEETTEE
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeE------------------eeccEEE
Confidence 1122345666666666665432 2344555667777777764 232 2211 2357899
Q ss_pred EEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCC----CHHHHHHHH
Q 009172 459 SFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVE----DFEDLKADV 534 (541)
Q Consensus 459 sf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~E----d~edli~dL 534 (541)
+|++++ ......+.+.|...++.+..+ ..+.|||++.+. +.+++++.|
T Consensus 390 ~~~~~~-~~~~~~~~~~l~~~Gv~v~~~---------------------------g~~~iRi~~~~~~t~e~i~~~l~~l 441 (449)
T 2cjg_A 390 AFSLPT-TADRDELIRQLWQRAVIVLPA---------------------------GADTVRFRPPLTVSTAEIDAAIAAV 441 (449)
T ss_dssp EEECSS-HHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred EEEECC-hHHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999864 233455666664445444321 147899987654 344555555
Q ss_pred HHHHh
Q 009172 535 LQALH 539 (541)
Q Consensus 535 ~~AL~ 539 (541)
.++++
T Consensus 442 ~~~l~ 446 (449)
T 2cjg_A 442 RSALP 446 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 215
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.7e-18 Score=187.07 Aligned_cols=255 Identities=16% Similarity=0.191 Sum_probs=174.9
Q ss_pred CCCCCCCCCchhHHHHHHHH----HHHhCCC------------cEEEeCCHHHHHHHHHHHhcc----------------
Q 009172 200 ASFEYGRYGNPTTVVVEEKM----SALEGAE------------STVIMASGMSASTVMLLALVP---------------- 247 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~L----A~l~g~~------------~~i~~sSG~~Ai~~al~all~---------------- 247 (541)
..+.|. ..|...++|+.+ ++++|.+ ..+++++|++|+..++.+...
T Consensus 106 ~~~~~~--~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~ 183 (481)
T 4e1o_A 106 LGFTWA--SSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADES 183 (481)
T ss_dssp CCSSTT--TCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHH
T ss_pred ccCCcC--CCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccc
Confidence 344454 467777777755 5666754 458888999998888775432
Q ss_pred ---CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC-----CHHHHHHhccCC-----CeeEEEEeCCCCCCCcccC
Q 009172 248 ---AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA-----DMEGLEAALNNN-----NVSLFFTESPTNPFLRCVD 314 (541)
Q Consensus 248 ---~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~-----dle~Le~ai~~~-----~tklV~lesp~NPtG~v~d 314 (541)
+++.|+++...|.+..... ...|++++.++.+ |+++|+++|+++ .+.+|++..++|++|.+.|
T Consensus 184 ~~~~~~~v~~s~~~H~s~~~~~----~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~ 259 (481)
T 4e1o_A 184 SLNARLVAYASDQAHSSVEKAG----LISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC 259 (481)
T ss_dssp HHHTTEEEEEETTSCHHHHHHH----HHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC
T ss_pred cccCCeEEEEcCcchHHHHHHH----HhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC
Confidence 5789999999999876544 2347888888753 899999999653 1678888999999999999
Q ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCc----ccccccC---CcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHh-hh
Q 009172 315 VKLVSDLCHKKGAIVCIDGTFATPLN----QKALSLG---ADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLH-HV 386 (541)
Q Consensus 315 i~~Ia~la~~~gillvvDea~a~~~~----~~~l~~g---aDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~-~~ 386 (541)
+++|+++|++||+++++|++|+.... .+....| +|.++.++||+++.+.+. +++++.+++++.+..... ..
T Consensus 260 l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~y 338 (481)
T 4e1o_A 260 LSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDC-TGFWVKDKYKLQQTFSVNPIY 338 (481)
T ss_dssp HHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESBHHHHHTTTCCCCGG
T ss_pred HHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCce-EEEEEeCHHHHHHHhcCCchh
Confidence 99999999999999999999876532 1222224 599999999999877542 445555554433211000 00
Q ss_pred ------------------cCCCccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhh
Q 009172 387 ------------------LGGALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHI 446 (541)
Q Consensus 387 ------------------~g~~~s~~~a~l~l~--~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l 446 (541)
.+........|.+++ +.+.+..++++..++++++.+.|++.|+++-+..|
T Consensus 339 l~~~~~~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~---------- 408 (481)
T 4e1o_A 339 LRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKR---------- 408 (481)
T ss_dssp GCCTTTTTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSCC----------
T ss_pred ccCcccCCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC----------
Confidence 011112344454444 44567778888899999999999988876422111
Q ss_pred HhhhcCCcccEEEEEEcCCHHHHHHHHHHcCC
Q 009172 447 ATQQMTGFGGVVSFEVDGDLTATIKFIDALKI 478 (541)
Q Consensus 447 ~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~ 478 (541)
..++++|.+++......++.+.|..
T Consensus 409 -------~~~~v~f~~~~~~~~~~~l~~~L~~ 433 (481)
T 4e1o_A 409 -------HLGLVVFRLKGPNSLTENVLKEIAK 433 (481)
T ss_dssp -------CSSEEEEEESSCHHHHHHHHHHHHH
T ss_pred -------ceeEEEEEeCCchHHHHHHHHHHHh
Confidence 2468999997654455666666643
No 216
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.81 E-value=2.7e-18 Score=185.16 Aligned_cols=288 Identities=14% Similarity=0.137 Sum_probs=187.4
Q ss_pred CCCCCCCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHhh--
Q 009172 202 FEYGRYGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV-- 269 (541)
Q Consensus 202 ~~Y~R~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all~--------~GD~VIv~~~~y~~~~~~~~~~-- 269 (541)
+.+.++.++...+|+++|+++.+. +.+++++||++|+..+++.+.. ++++||+.++.|++........
T Consensus 91 ~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~ 170 (472)
T 3hmu_A 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG 170 (472)
T ss_dssp CSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC
T ss_pred ccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC
Confidence 445577889999999999999864 5788889999999999987764 4689999999998843221111
Q ss_pred -------cccCCcEEEEeCCC---------C--------HHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHHH
Q 009172 270 -------LPKMGITATVIDPA---------D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKLV 318 (541)
Q Consensus 270 -------l~~~Gi~v~~vd~~---------d--------le~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~I 318 (541)
.. ....+..++.. | +++|+++++. +++++|++|+++|++|.+.+ +++|
T Consensus 171 ~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l 249 (472)
T 3hmu_A 171 MAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEI 249 (472)
T ss_dssp CHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHH
T ss_pred ChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHH
Confidence 11 11123333311 2 7888888861 35899999999999999887 9999
Q ss_pred HHHHHhCCCEEEEEcCCCCCC-c-----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcC--CC
Q 009172 319 SDLCHKKGAIVCIDGTFATPL-N-----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLG--GA 390 (541)
Q Consensus 319 a~la~~~gillvvDea~a~~~-~-----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g--~~ 390 (541)
.++|++||++||+||+|.... . ........|+++ ++|.+++++ ...|++++++++++.+.......+ ..
T Consensus 250 ~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t--~sK~l~gg~-~plG~v~~~~~i~~~~~~~~~~~~~t~~ 326 (472)
T 3hmu_A 250 QRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMT--IAKGLSSGY-APIGGSIVCDEVAHVIGKDEFNHGYTYS 326 (472)
T ss_dssp HHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEE--ECGGGTTTS-SCCEEEEEEHHHHHHHTTSCBCCCCTTT
T ss_pred HHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceee--echhhhcCC-cceEEEEECHHHHHhcccCCccccCCCC
Confidence 999999999999999976421 1 122233467775 679998753 235788889998888732111122 23
Q ss_pred ccHHHHHHHHHhHHHHH--HHHHHHH-HHHHHHHHHHHhC---CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 391 LNPNAAYLIIRGMKTLH--LRVQQQN-STALRMAEILEAH---PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~--~r~~~~~-~na~~la~~L~~~---p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
.++..+..++..|+.+. ...++.. ++.+++.+.|++. |.+.. .++.|.++.|++..
T Consensus 327 ~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~------------------vr~~G~~~~i~~~~ 388 (472)
T 3hmu_A 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGE------------------AKIVGMMASIALTP 388 (472)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGGGSTTEEE------------------EEEETTEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCCeEE------------------EEecCceEEEEEec
Confidence 46777777676776543 2344555 5666777777543 22221 23468899999864
Q ss_pred C-----------HHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHH
Q 009172 465 D-----------LTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFED 529 (541)
Q Consensus 465 ~-----------~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~ed 529 (541)
+ ......+.+.|...|+.+.. .| +.|||+..+ |+.++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~-------------------------~g---~~iRi~p~~~~t~e~i~~ 440 (472)
T 3hmu_A 389 NKASRAKFASEPGTIGYICRERCFANNLIMRH-------------------------VG---DRMIISPPLVITPAEIDE 440 (472)
T ss_dssp CGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEE-------------------------ET---TEEEECCCTTCCHHHHHH
T ss_pred CccccccccchhHHHHHHHHHHHHHCCcEEEe-------------------------cC---CEEEEECCCCCCHHHHHH
Confidence 2 12244555555433432221 12 689999543 45566
Q ss_pred HHHHHHHHHh
Q 009172 530 LKADVLQALH 539 (541)
Q Consensus 530 li~dL~~AL~ 539 (541)
+++.|+++|+
T Consensus 441 ~l~~l~~~l~ 450 (472)
T 3hmu_A 441 MFVRIRKSLD 450 (472)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666664
No 217
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.81 E-value=2.2e-18 Score=182.41 Aligned_cols=217 Identities=15% Similarity=0.089 Sum_probs=143.5
Q ss_pred CCCCCCCCchhHHHHHHHHHHHh-CC-------Cc--EEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHh
Q 009172 201 SFEYGRYGNPTTVVVEEKMSALE-GA-------ES--TVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIET 268 (541)
Q Consensus 201 ~~~Y~R~~~p~~~~Le~~LA~l~-g~-------~~--~i~~sSG~~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~ 268 (541)
.+.|+- .....+|++++++++ +. ++ .+++++|++|+.+++..++. | |+|++++|+|.....
T Consensus 65 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~---- 137 (405)
T 3k7y_A 65 EKPYLL--GNGTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVN---- 137 (405)
T ss_dssp CCCCCT--TSSCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHH----
T ss_pred CCCCCC--CCCcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHH----
Confidence 455653 334568888888875 21 22 25555666999999988877 8 999999999998654
Q ss_pred hcccCCcEEEEeCC-------CCHHHHHHhccC-CCeeEEEEeCC-CCCCCcccC---HHHHHHHHHhCCCEEEEEcCCC
Q 009172 269 VLPKMGITATVIDP-------ADMEGLEAALNN-NNVSLFFTESP-TNPFLRCVD---VKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 269 ~l~~~Gi~v~~vd~-------~dle~Le~ai~~-~~tklV~lesp-~NPtG~v~d---i~~Ia~la~~~gillvvDea~a 336 (541)
.++..|.++..++. .|++++++++++ .++++|++++| |||||.+++ +++|+++|++||+++|+||+|.
T Consensus 138 ~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~ 217 (405)
T 3k7y_A 138 MIESRGFNLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQ 217 (405)
T ss_dssp HHHTTTCEEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCT
T ss_pred HHHHcCCeEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcc
Confidence 44556888877753 278999998863 24688988765 899999998 5578888999999999999987
Q ss_pred CCCccc------cc----cc-CCcEEEECCccccCCCCCceEEEEE---eChHHHHHHHH----HhhhcCCCccHHHHHH
Q 009172 337 TPLNQK------AL----SL-GADLVLHSATKFIGGHNDVLAGSIS---GSGKLVTQIRN----LHHVLGGALNPNAAYL 398 (541)
Q Consensus 337 ~~~~~~------~l----~~-gaDivv~S~sK~lgg~g~v~gG~vv---~~~~li~~l~~----~~~~~g~~~s~~~a~l 398 (541)
...... +. .. ...+++.|+||.|+-.|.. .|+++ .++++++++.. .........+.+.+.+
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR-iG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~ 296 (405)
T 3k7y_A 218 GFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGER-AGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRI 296 (405)
T ss_dssp TTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTT-EEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred cccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcccc-ceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHH
Confidence 643211 11 11 2458899999999866644 67664 36666655542 2222222233343333
Q ss_pred HHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Q 009172 399 IIRGMK----------TLHLRVQQQNSTALRMAEILE 425 (541)
Q Consensus 399 ~l~~l~----------tl~~r~~~~~~na~~la~~L~ 425 (541)
+...++ .+....++..++++.+.+.|+
T Consensus 297 ~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~ 333 (405)
T 3k7y_A 297 LCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLE 333 (405)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322222 222233445677888888888
No 218
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.81 E-value=4.8e-19 Score=187.92 Aligned_cols=286 Identities=14% Similarity=0.095 Sum_probs=186.3
Q ss_pred CCCchhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHhcc--CCCEEEEcCCCCcchHHHHHhhcc----------c
Q 009172 206 RYGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLALVP--AGGHIVTTTDCYRKTRIFIETVLP----------K 272 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g-~~~~i~~sSG~~Ai~~al~all~--~GD~VIv~~~~y~~~~~~~~~~l~----------~ 272 (541)
.|+++...+|+++|+++++ .+.+++++||++|+..++..+.. ++++||+.++.|++.......... .
T Consensus 89 ~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~ 168 (429)
T 3k28_A 89 GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDS 168 (429)
T ss_dssp SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCc
Confidence 3678999999999999984 56788888999999999987653 678999999999864311100000 0
Q ss_pred CCc------EEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCc
Q 009172 273 MGI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN 340 (541)
Q Consensus 273 ~Gi------~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~ 340 (541)
.++ .+..++..|+++|++++++ +++++|++|.++|++|.+.+ +++|.++|++||++||+||+|.....
T Consensus 169 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~ 248 (429)
T 3k28_A 169 PGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRV 248 (429)
T ss_dssp TTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTS
T ss_pred CCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccccc
Confidence 011 3444555689999998862 24889999888888899888 99999999999999999999864311
Q ss_pred -----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-hcC--CCccHHHHHHHHHhHHHH-HHHHH
Q 009172 341 -----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTL-HLRVQ 411 (541)
Q Consensus 341 -----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-~~g--~~~s~~~a~l~l~~l~tl-~~r~~ 411 (541)
........|++ +++|.+++ | ...|++++++++++.+..... ..+ ...++..+..++..++.+ +...+
T Consensus 249 g~~~~~~~~~~~~di~--t~sK~~~~-G-~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~ 324 (429)
T 3k28_A 249 AYNCGQGYYGVTPDLT--CLGKVIGG-G-LPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLTPESYV 324 (429)
T ss_dssp STTHHHHHHTCCCSEE--EECGGGGT-T-SCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCCHHHHH
T ss_pred CcchHHHHhCCCCcee--hhhhhhcC-C-CCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 11122335665 57899976 4 457889999988877654221 122 234666666666666532 33445
Q ss_pred HHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------------CHHHHHHHHHH
Q 009172 412 QQNSTALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------------DLTATIKFIDA 475 (541)
Q Consensus 412 ~~~~na~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g------------~~~~~~~~l~~ 475 (541)
+..++.+++.+.|++. +.+..+ ++.|.++++++.. +......+.+.
T Consensus 325 ~~~~~~~~l~~~L~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (429)
T 3k28_A 325 EFERKAEMLEAGLRKAAEKHGIPHHI------------------NRAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYRE 386 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEE------------------EEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEE------------------EeeccEEEEEEecCCcccccccccccHHHHHHHHHH
Confidence 5566667777766542 322211 3367788888742 12234556666
Q ss_pred cCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC--CCHHHHHHHHHHHHhh
Q 009172 476 LKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV--EDFEDLKADVLQALHA 540 (541)
Q Consensus 476 L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~--Ed~edli~dL~~AL~~ 540 (541)
+...|+.+..|+ .+.+|+++.. |+.+++++.|++++++
T Consensus 387 l~~~Gv~v~~~~---------------------------~~~~r~~~~~t~e~i~~~l~~l~~~l~~ 426 (429)
T 3k28_A 387 MVEQGVFLPPSQ---------------------------FEGLFLSTVHSDADIEATIAAAEIAMSK 426 (429)
T ss_dssp HHHTTEECCSST---------------------------TSCBCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHCCeEEecCC---------------------------CCCEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 655565554432 2345665532 4567777777777764
No 219
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.80 E-value=2.2e-18 Score=186.08 Aligned_cols=249 Identities=13% Similarity=0.110 Sum_probs=169.9
Q ss_pred CchhHHHHHHHH----HHHhCCC-----------cEEEeCCHHHHHHHHHHHhc-------------------cCCCEEE
Q 009172 208 GNPTTVVVEEKM----SALEGAE-----------STVIMASGMSASTVMLLALV-------------------PAGGHIV 253 (541)
Q Consensus 208 ~~p~~~~Le~~L----A~l~g~~-----------~~i~~sSG~~Ai~~al~all-------------------~~GD~VI 253 (541)
..|...++|+.+ ++++|.+ ..+++++|++|+..++.+.. .+++.|+
T Consensus 107 ~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi 186 (475)
T 3k40_A 107 ASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186 (475)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEE
Confidence 467777777654 6777765 47888999999888876542 1357899
Q ss_pred EcCCCCcchHHHHHhhcccCCcEEEEeCC----CCHHHHHHhccCC-----CeeEEEEeCCCCCCCcccCHHHHHHHHHh
Q 009172 254 TTTDCYRKTRIFIETVLPKMGITATVIDP----ADMEGLEAALNNN-----NVSLFFTESPTNPFLRCVDVKLVSDLCHK 324 (541)
Q Consensus 254 v~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----~dle~Le~ai~~~-----~tklV~lesp~NPtG~v~di~~Ia~la~~ 324 (541)
++..+|.+..... ...|++++.++. .|+++|+++|+++ .+++|++..++|++|.+.|+++|+++|++
T Consensus 187 ~s~~~H~s~~~~~----~~~g~~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~ 262 (475)
T 3k40_A 187 CSDQAHSSVERAG----LLGGVKLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNK 262 (475)
T ss_dssp EETTSCHHHHHHH----HHHTCEEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHH
T ss_pred ECCCchHHHHHHH----HHcCCceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHH
Confidence 9999999876544 335888888876 4899999998653 16788888999999999999999999999
Q ss_pred CCCEEEEEcCCCCCCcc----ccccc---CCcEEEECCccccCCCCCceEEEEEeChHHHH-HHHH---Hhhh--cC---
Q 009172 325 KGAIVCIDGTFATPLNQ----KALSL---GADLVLHSATKFIGGHNDVLAGSISGSGKLVT-QIRN---LHHV--LG--- 388 (541)
Q Consensus 325 ~gillvvDea~a~~~~~----~~l~~---gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-~l~~---~~~~--~g--- 388 (541)
||+++++|++|+.+... ..... .+|.++.++||+++++.+. +++++.+++++. .+.. +... .+
T Consensus 263 ~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~-g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~ 341 (475)
T 3k40_A 263 HNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDC-SAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP 341 (475)
T ss_dssp TTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSC-EEEEESSGGGC--------------------
T ss_pred hCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCce-EEEEEeCHHHHHHHhcCCccccCCCcCCCCC
Confidence 99999999998764321 11112 3699999999998876532 444444444422 2111 0000 00
Q ss_pred ---------C-CccHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCccc
Q 009172 389 ---------G-ALNPNAAYLIIR--GMKTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGG 456 (541)
Q Consensus 389 ---------~-~~s~~~a~l~l~--~l~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~ 456 (541)
+ .......|.+++ +.+.+..++++..++++++.+.|++.|+++-+ .|. ..+
T Consensus 342 ~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~-~~~----------------~~~ 404 (475)
T 3k40_A 342 DYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELA-AEI----------------NMG 404 (475)
T ss_dssp -------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEES-SCC----------------BTT
T ss_pred CcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEe-cCC----------------ceE
Confidence 0 012233444443 34556777888889999999999998876532 221 246
Q ss_pred EEEEEEcCCHHHHHHHHHHcCC
Q 009172 457 VVSFEVDGDLTATIKFIDALKI 478 (541)
Q Consensus 457 ~vsf~l~g~~~~~~~~l~~L~~ 478 (541)
+++|.+++......++.+.|..
T Consensus 405 iv~f~~~~~~~~~~~l~~~L~~ 426 (475)
T 3k40_A 405 LVCFRLKGSNERNEALLKRING 426 (475)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHh
Confidence 8999997654455667776653
No 220
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.80 E-value=2.7e-18 Score=181.73 Aligned_cols=257 Identities=17% Similarity=0.133 Sum_probs=170.9
Q ss_pred CCchhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHH--hccCCCEEEEcCCCCcchHHHHHhhc----------ccC
Q 009172 207 YGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLA--LVPAGGHIVTTTDCYRKTRIFIETVL----------PKM 273 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~-g~~~~i~~sSG~~Ai~~al~a--ll~~GD~VIv~~~~y~~~~~~~~~~l----------~~~ 273 (541)
+.++...+|+++|++++ +.+.+++++||++|+.++++. .+..+|+||+.++.|++......... ...
T Consensus 89 ~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~ 168 (424)
T 2e7u_A 89 APSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSA 168 (424)
T ss_dssp SCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESST
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCC
Confidence 67888999999999999 567788889999999999885 23446889999999987432110000 012
Q ss_pred Cc------EEEEeCCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCcc
Q 009172 274 GI------TATVIDPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQ 341 (541)
Q Consensus 274 Gi------~v~~vd~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~~ 341 (541)
|+ .+..++..|+++|++++++ +++++|+++..++++|.+.+ +++|.++ ++||++||+||+|......
T Consensus 169 g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g 247 (424)
T 2e7u_A 169 GVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLA 247 (424)
T ss_dssp TCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSS
T ss_pred CCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccc
Confidence 32 3555666799999998862 24788887554455898888 9999999 9999999999998743111
Q ss_pred -----cccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-hcC--CCccHHHHHHHHHhHHHHHH---HH
Q 009172 342 -----KALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLG--GALNPNAAYLIIRGMKTLHL---RV 410 (541)
Q Consensus 342 -----~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-~~g--~~~s~~~a~l~l~~l~tl~~---r~ 410 (541)
.......|++ |++|.+++ | ..+|++++++++++.+..... ..+ ...++..+.++...++.+.. ..
T Consensus 248 ~~~~~~~~~~~~di~--s~sK~l~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~ 323 (424)
T 2e7u_A 248 FGGATELLGLKPDLV--TLGKILGG-G-LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYY 323 (424)
T ss_dssp TTHHHHHHTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHhCCCcchh--hhhhhhhC-C-cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHhccHHH
Confidence 1112235765 78999996 4 457899999988877654211 122 23566666666666665432 45
Q ss_pred HHHHHHHHHHHHHHHhC----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC------------HHHHHHHHH
Q 009172 411 QQQNSTALRMAEILEAH----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD------------LTATIKFID 474 (541)
Q Consensus 411 ~~~~~na~~la~~L~~~----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~------------~~~~~~~l~ 474 (541)
++..++.+++.+.|++. +.+.. .++.|.++++++... .....++.+
T Consensus 324 ~~~~~~~~~l~~~L~~~~~~~~~~~~------------------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (424)
T 2e7u_A 324 AYLEDLGARLEAGLKEVLKEKGLPHT------------------VNRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFH 385 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCE------------------EEEETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceE------------------EEeeceEEEEEEeCCCCcchhhhcccCHHHHHHHHH
Confidence 55666777777777653 22111 123577999998641 234556777
Q ss_pred HcCCCceeecCC
Q 009172 475 ALKIPYIAPSFG 486 (541)
Q Consensus 475 ~L~~~~iavS~G 486 (541)
.|...++.+..|
T Consensus 386 ~l~~~Gv~v~~~ 397 (424)
T 2e7u_A 386 GLLDRGIYWPPS 397 (424)
T ss_dssp HHHTTTEECCSS
T ss_pred HHHHCCeEEecc
Confidence 776567666544
No 221
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.80 E-value=1.1e-17 Score=180.56 Aligned_cols=293 Identities=15% Similarity=0.135 Sum_probs=188.5
Q ss_pred CCCCC-CCCchhHHHHHHHHHHHhC--CCcEEEeCCHHHHHHHHHHHhcc--------CCCEEEEcCCCCcchHHHHHhh
Q 009172 201 SFEYG-RYGNPTTVVVEEKMSALEG--AESTVIMASGMSASTVMLLALVP--------AGGHIVTTTDCYRKTRIFIETV 269 (541)
Q Consensus 201 ~~~Y~-R~~~p~~~~Le~~LA~l~g--~~~~i~~sSG~~Ai~~al~all~--------~GD~VIv~~~~y~~~~~~~~~~ 269 (541)
.|.++ .+.++...+|+++|+++.+ .+.+++++||++|+..+++.+.+ .+++||+.++.|++........
T Consensus 87 ~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~ 166 (476)
T 3i5t_A 87 PYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166 (476)
T ss_dssp CCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHT
T ss_pred cCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccc
Confidence 34344 6788999999999999985 46788889999999999987753 3579999999998854322111
Q ss_pred ---------cccCCcEEEEeCC-------C-C--------HHHHHHhccC---CCeeEEEEeCCCCCCCcccC----HHH
Q 009172 270 ---------LPKMGITATVIDP-------A-D--------MEGLEAALNN---NNVSLFFTESPTNPFLRCVD----VKL 317 (541)
Q Consensus 270 ---------l~~~Gi~v~~vd~-------~-d--------le~Le~ai~~---~~tklV~lesp~NPtG~v~d----i~~ 317 (541)
.......+.+++. + + +++|+++++. +++++|++|+++|++|.+.+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~ 246 (476)
T 3i5t_A 167 TGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHAR 246 (476)
T ss_dssp CCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHH
T ss_pred cCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHH
Confidence 0001112333331 1 1 7888888862 35899999999999997666 999
Q ss_pred HHHHHHhCCCEEEEEcCCCCCC----c--cc-ccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHH-------
Q 009172 318 VSDLCHKKGAIVCIDGTFATPL----N--QK-ALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL------- 383 (541)
Q Consensus 318 Ia~la~~~gillvvDea~a~~~----~--~~-~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~------- 383 (541)
|.++|++||++||+||++.... . .. ......|+++ ++|.++++ -...|++++++++++.+...
T Consensus 247 l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t--~sK~l~~G-~~plg~v~~~~~i~~~~~~~~~~~~~~ 323 (476)
T 3i5t_A 247 FKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIIT--FAKGVTSG-YVPLGGLAISEAVLARISGENAKGSWF 323 (476)
T ss_dssp HHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEE--ECGGGGTT-SSCCEEEEECHHHHHTTSGGGCTTCEE
T ss_pred HHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhh--hhhhhcCC-CcCeEEEEECHHHHHHHhcCCcccccc
Confidence 9999999999999999976421 1 11 2223457775 67999863 13467888999988877643
Q ss_pred hhhcCCCccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEE
Q 009172 384 HHVLGGALNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFE 461 (541)
Q Consensus 384 ~~~~g~~~s~~~a~l~l~~l~tl~--~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~ 461 (541)
........++..+..++..++.+. ...++..++.+++.+.|+.... +|.+ ...++.|.+++|+
T Consensus 324 ~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~~-----~~~v----------~~v~~~G~~~~i~ 388 (476)
T 3i5t_A 324 TNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLRD-----LPGV----------AETRSVGLVGCVQ 388 (476)
T ss_dssp CCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTTT-----STTE----------EEEEEETTEEEEE
T ss_pred cccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc-----CCCe----------EEEEecCceeEEE
Confidence 111223456777777777776543 2345556677777777765321 1111 1123468899999
Q ss_pred EcCCHH----------HHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCH
Q 009172 462 VDGDLT----------ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDF 527 (541)
Q Consensus 462 l~g~~~----------~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~ 527 (541)
+..+.. ....+.+.+...|+.+. | .| +.|||+..+ ++.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~----------~---------------~g---~~iRi~p~l~~t~e~i 440 (476)
T 3i5t_A 389 CLLDPTRADGTAEDKAFTLKIDERCFELGLIVR----------P---------------LG---DLCVISPPLIISRAQI 440 (476)
T ss_dssp ECCC-----CCHHHHHHHHHHHHHHHHTTEECE----------E---------------ET---TEEEECCCTTCCHHHH
T ss_pred EecCccccccccchhHHHHHHHHHHHHCCCEEE----------e---------------cC---CEEEEECCCCCCHHHH
Confidence 864311 24455555543343222 1 12 689999554 455
Q ss_pred HHHHHHHHHHHh
Q 009172 528 EDLKADVLQALH 539 (541)
Q Consensus 528 edli~dL~~AL~ 539 (541)
+++++.|+++|+
T Consensus 441 ~~~l~~l~~~l~ 452 (476)
T 3i5t_A 441 DEMVAIMRQAIT 452 (476)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666664
No 222
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.79 E-value=9.6e-19 Score=183.31 Aligned_cols=281 Identities=13% Similarity=0.046 Sum_probs=187.6
Q ss_pred chhHHHHHHHHHHHhCCC--c-EEEe-CCHHHHHHHHHHHhccC--CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC
Q 009172 209 NPTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~--~-~i~~-sSG~~Ai~~al~all~~--GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~ 282 (541)
....++.|+.|++++|++ . ++++ ++|++++++++..++.+ ||+|++....+.+. . +...+++.|..+++++.
T Consensus 57 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~~~~Gd~v~~~~~g~~~~-~-~~~~a~~~G~~~~~~~~ 134 (377)
T 3e77_A 57 AKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIGLKAGRCADYVVTGAWSA-K-AAEEAKKFGTINIVHPK 134 (377)
T ss_dssp HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGGGSTTCEEEECCCSHHHH-H-HHHHHTTTSEEEECSCC
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccCCCCCCeEEEEECCHHHH-H-HHHHHHHhCCceEEecc
Confidence 346778899999999985 3 4553 46779999999999865 99998877776654 2 33567788988776653
Q ss_pred C-----CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCC-CcccccccCCcEEEECCc
Q 009172 283 A-----DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADLVLHSAT 356 (541)
Q Consensus 283 ~-----dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~-~~~~~l~~gaDivv~S~s 356 (541)
+ ++++++.++++ +|++|.+.+..|.+|.++|+ +|+++|+++++|.+++.+ .+.+..+++ +++.|.+
T Consensus 135 ~~~~~~~~~~~~~~i~~-~t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~ 206 (377)
T 3e77_A 135 LGSYTKIPDPSTWNLNP-DASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQ 206 (377)
T ss_dssp CSSSCSCCCGGGCCCCT-TCSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGG
T ss_pred CCCcCCCCChHHhccCC-CccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecc
Confidence 2 45666777776 59999998888889999998 478899999999998765 345555555 6889999
Q ss_pred cccCCCCCceEEEEEeChHHHHHHH----------HH--hhhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISGSGKLVTQIR----------NL--HHVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTAL 418 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~~~~li~~l~----------~~--~~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na~ 418 (541)
|++|+.| .|+++.++++++++. .. .....++++....+.+..+++. ++.+.++..+.++
T Consensus 207 K~~gp~G---~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~ 283 (377)
T 3e77_A 207 KNVGSAG---VTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQ 283 (377)
T ss_dssp GTTSCTT---CEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred cccCCCc---cEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9998777 466666554432211 11 0112234554444444444443 3444556667788
Q ss_pred HHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHHHHHHHHHcCCCceeecCCCcccceecC
Q 009172 419 RMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTATIKFIDALKIPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 419 ~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g---~~~~~~~~l~~L~~~~iavS~G~~~sl~~~p 495 (541)
++.+.|++.|++. + .+. .+.+ ..+.+++|.+++ +.+....|++.+...++.+..|..
T Consensus 284 ~l~~~L~~~~g~~-~-~~~---~~~~--------rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~~~g~~------- 343 (377)
T 3e77_A 284 TIYEIIDNSQGFY-V-CPV---EPQN--------RSKMNIPFRIGNAKGDDALEKRFLDKALELNMLSLKGHR------- 343 (377)
T ss_dssp HHHHHHHTSTTSE-E-CCS---CGGG--------BCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEESCBCCT-------
T ss_pred HHHHHHHhcCCce-e-cCC---CHHH--------cCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEEeCCCC-------
Confidence 8888998877653 2 221 1111 134579999986 222224677766555665443310
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+.+|+|++..++++.++.|.++|++
T Consensus 344 ------------------~~g~iRiS~~~~~t~edId~l~~al~~ 370 (377)
T 3e77_A 344 ------------------SVGGIRASLYNAVTIEDVQKLAAFMKK 370 (377)
T ss_dssp ------------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ------------------cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 124599999998888888888877764
No 223
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.79 E-value=3.9e-18 Score=180.52 Aligned_cols=216 Identities=17% Similarity=0.198 Sum_probs=148.3
Q ss_pred CCchhHHHHHHHHHHHhC-CCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHh----------hcccC
Q 009172 207 YGNPTTVVVEEKMSALEG-AESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIET----------VLPKM 273 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g-~~~~i~~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~----------~l~~~ 273 (541)
+.++...+|+++|+++++ .+.+++++||++|+.+++... ...+++||+.++.|++....... .....
T Consensus 89 ~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 168 (427)
T 3fq8_A 89 APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSP 168 (427)
T ss_dssp SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCS
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCC
Confidence 478899999999999985 467888889999999998432 23458899999999873311100 00011
Q ss_pred Cc------EEEEeCCCCHHHHHHhccCC--CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCc-
Q 009172 274 GI------TATVIDPADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLN- 340 (541)
Q Consensus 274 Gi------~v~~vd~~dle~Le~ai~~~--~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~- 340 (541)
|+ .+..++..|+++|+++++++ ++++|++++++|++|.+.+ +++|.++|++||++||+||+|.....
T Consensus 169 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g 248 (427)
T 3fq8_A 169 GVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIA 248 (427)
T ss_dssp SSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTB
T ss_pred CCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccC
Confidence 11 24455566899999998652 5899999999999999999 99999999999999999999873311
Q ss_pred ----ccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-hcCC--CccHHHHHHHHHhHHHH--HHHHH
Q 009172 341 ----QKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-VLGG--ALNPNAAYLIIRGMKTL--HLRVQ 411 (541)
Q Consensus 341 ----~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-~~g~--~~s~~~a~l~l~~l~tl--~~r~~ 411 (541)
........|++ |++|.+++ | ..+|++++++++++.+..... ..+. ..++..+..+...++.+ +...+
T Consensus 249 ~~~~~~~~~~~~di~--t~sK~~~~-G-~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~ 324 (427)
T 3fq8_A 249 YGGVQEKFGVTPDLT--TLGKIIGG-G-LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYE 324 (427)
T ss_dssp TTHHHHHTTCCCSEE--EECGGGGT-T-SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHH
T ss_pred cchhhHhcCCCCChh--hhhhhhhC-C-cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHH
Confidence 11222334654 57799995 3 457889999998877654211 1222 33677776666666544 23345
Q ss_pred HHHHHHHHHHHHHHh
Q 009172 412 QQNSTALRMAEILEA 426 (541)
Q Consensus 412 ~~~~na~~la~~L~~ 426 (541)
+..++.+++.+.|++
T Consensus 325 ~~~~~~~~~~~~l~~ 339 (427)
T 3fq8_A 325 YLDQITKRLSDGLLA 339 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666666654
No 224
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.77 E-value=3e-18 Score=180.25 Aligned_cols=282 Identities=12% Similarity=-0.015 Sum_probs=178.1
Q ss_pred CCCCchhHHHHHHHHHHHhCCC--c-EEEe-CCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 205 GRYGNPTTVVVEEKMSALEGAE--S-TVIM-ASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 205 ~R~~~p~~~~Le~~LA~l~g~~--~-~i~~-sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
++......++.|+.|++++|++ . ++++ ++|++++++++..++++||+|++....+.+.. +...+++.| +++++
T Consensus 67 ~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l~~~gd~v~~~~~~~~~~~--~~~~a~~~G-~v~~v 143 (386)
T 3qm2_A 67 GKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYWAAS--AIKEAKKYC-APQII 143 (386)
T ss_dssp ------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHHCTTCCEEEEEESSHHHHH--HHHHHTTTS-EEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhccCCCCeEEEEeCCHHHHH--HHHHHHHhC-CeEEE
Confidence 3334567889999999999984 2 4553 67889999999999999999876555555532 334566778 77776
Q ss_pred CCC--------CHHHHHHhccCCCeeEEEEeCCCCCCCcc-cCHHHHHHHHHhCCCEEEEEcCCCCC-CcccccccCCcE
Q 009172 281 DPA--------DMEGLEAALNNNNVSLFFTESPTNPFLRC-VDVKLVSDLCHKKGAIVCIDGTFATP-LNQKALSLGADL 350 (541)
Q Consensus 281 d~~--------dle~Le~ai~~~~tklV~lesp~NPtG~v-~di~~Ia~la~~~gillvvDea~a~~-~~~~~l~~gaDi 350 (541)
+.+ ++++++.++++ +|++|++.+..|.+|.+ .|+++|. +|+++++|.+++.+ .+.+..++| +
T Consensus 144 ~~~~~~~G~~~~~~~~~~~l~~-~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~ 215 (386)
T 3qm2_A 144 DAKITVDGKRAVKPMREWQLSD-NAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--V 215 (386)
T ss_dssp ECEEEETTEEEECCGGGCCCCT-TCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--E
T ss_pred ecCcccCCCCCCchHHHhhcCC-CCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--E
Confidence 433 45677778887 59999998777888996 8999885 79999999998765 345555554 6
Q ss_pred EEECCccccCCCCCceEEEEEeChHHHHHHHH----------Hh--hhcCCCccHHHHHHHHHhHHH------HHHHHHH
Q 009172 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRN----------LH--HVLGGALNPNAAYLIIRGMKT------LHLRVQQ 412 (541)
Q Consensus 351 vv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~----------~~--~~~g~~~s~~~a~l~l~~l~t------l~~r~~~ 412 (541)
++.|.+|++|+.| .|+++.++++++++.. .. ....++++....+.+..+++. ++...++
T Consensus 216 ~~~s~hK~lGP~G---~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~ 292 (386)
T 3qm2_A 216 IYAGAQKNIGPAG---LTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKI 292 (386)
T ss_dssp EEEETTTTTCCTT---EEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEecccccCCCc---cEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 7799999998777 5777776655321110 00 001112222222222333332 3334445
Q ss_pred HHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccce
Q 009172 413 QNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIV 492 (541)
Q Consensus 413 ~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~ 492 (541)
..+.++++.+.|++.+ +. ..+. .+.+ ..+++++|.+++.... ..++..|+..++.+..|..
T Consensus 293 ~~~l~~~l~~~l~~~~-~~--~~~~---~~~~--------rs~~iv~f~~~~~~~~-~~~~~~L~~~gI~~~~g~~---- 353 (386)
T 3qm2_A 293 NQQKAELLYGVIDNSD-FY--RNDV---AQAN--------RSRMNVPFQLADNTLD-KVFLEESFAAGLHALKGHR---- 353 (386)
T ss_dssp HHHHHHHHHHHHHTCS-SE--ECCB---CGGG--------BCSSEEEEEESSGGGH-HHHHHHHHHTTEECCBCCT----
T ss_pred HHHHHHHHHHHHHHCC-Cc--ccCC---CHHH--------cCceEEEEECCCcccc-HHHHHHHHHCCCEEeCCCC----
Confidence 5566777778887652 21 1111 1111 1356899999852122 4666666666666544311
Q ss_pred ecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 493 DQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 493 ~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+.||+|++..++++.|+.|.++|++
T Consensus 354 ---------------------~~~~iRiS~~~~~t~edId~l~~~l~~ 380 (386)
T 3qm2_A 354 ---------------------VVGGMRASIYNAMPIEGVKALTDFMID 380 (386)
T ss_dssp ---------------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ---------------------CcCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 013599999998888888888888764
No 225
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.75 E-value=5.4e-17 Score=169.21 Aligned_cols=274 Identities=12% Similarity=0.019 Sum_probs=177.5
Q ss_pred chhHHHHHHHHHHHhCCC---cEEE-eCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC--
Q 009172 209 NPTTVVVEEKMSALEGAE---STVI-MASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP-- 282 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~---~~i~-~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~-- 282 (541)
....++.|+.|++++|++ ++++ +++|++++++++..++ +||++++....+.+. . +...+++.|+++++++.
T Consensus 49 ~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~~-~~~~~~~i~~~~~~~-~-~~~~a~~~G~~v~~~~~~~ 125 (361)
T 3m5u_A 49 EEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLA-LNGVCEYANTGVWTK-K-AIKEAQILGVNVKTVASSE 125 (361)
T ss_dssp HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHC-CSSCEEEEECSHHHH-H-HHHHHHHTTCCEEEEEECT
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhcC-CCCeEEEEeCCHHHH-H-HHHHHHHcCCceEEEeccc
Confidence 356778899999999983 3444 4556799999999998 888652221222232 2 22345667888777642
Q ss_pred -----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC-cccccccCCcEEEECCc
Q 009172 283 -----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL-NQKALSLGADLVLHSAT 356 (541)
Q Consensus 283 -----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~-~~~~l~~gaDivv~S~s 356 (541)
.+++. + |++ +|++|++.+..|.+|.+.|. +++ +|+++++|.+++.+. +.+.. ..|+++.|.+
T Consensus 126 ~g~~~~~~~~--~-l~~-~t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~--~~d~~~~s~~ 193 (361)
T 3m5u_A 126 ESNFDHIPRV--E-FSD-NADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFS--NIALFYGGVQ 193 (361)
T ss_dssp TTTSCSCCCC--C-CCT-TSSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCT--TEEEEEEETT
T ss_pred CcCCCcCChh--h-cCC-CCCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCCCCCcc--cCCEEEEech
Confidence 13444 3 776 59999998888888998772 344 499999999987653 33332 3689999999
Q ss_pred cccCCCCCceEEEEEeChHHHHHHHH--------Hh-----hhcCCCccHHHHHHHHHhHHH------HHHHHHHHHHHH
Q 009172 357 KFIGGHNDVLAGSISGSGKLVTQIRN--------LH-----HVLGGALNPNAAYLIIRGMKT------LHLRVQQQNSTA 417 (541)
Q Consensus 357 K~lgg~g~v~gG~vv~~~~li~~l~~--------~~-----~~~g~~~s~~~a~l~l~~l~t------l~~r~~~~~~na 417 (541)
|++|++| .|+++.++++.+++.. +. ....++++....+.+..+++. ++.+.++..+.+
T Consensus 194 K~~gp~G---~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~ 270 (361)
T 3m5u_A 194 KNAGISG---LSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKA 270 (361)
T ss_dssp TTSSCTT---CEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hccCCCc---cEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9998776 5788888888776643 00 011134444444444444443 333445566777
Q ss_pred HHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC--CHHHHHHHHHHcCCCceeecCCCcccceecC
Q 009172 418 LRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG--DLTATIKFIDALKIPYIAPSFGGCESIVDQP 495 (541)
Q Consensus 418 ~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g--~~~~~~~~l~~L~~~~iavS~G~~~sl~~~p 495 (541)
+++.+.|++.+++.....+ +.+ ...++++|.+++ +.+ ..++..|+..++.+..|..
T Consensus 271 ~~l~~~L~~~~g~~~~~~~-----~~~--------rs~~ivsf~~~~~~~~~--~~~~~~L~~~gI~~~~g~~------- 328 (361)
T 3m5u_A 271 TMLYECIDLSNGFYKGHAD-----KKD--------RSLMNVSFNIAKNKDLE--PLFVKEAEEAGMIGLKGHR------- 328 (361)
T ss_dssp HHHHHHHHTSTTSEEESSC-----GGG--------BCSSEEEEEESSCTTHH--HHHHHHHHHTTEECCBCCT-------
T ss_pred HHHHHHHHHCCCeeeccCC-----HHH--------cCCeEEEEECCCchhhh--HHHHHHHHHCCCEEecCCC-------
Confidence 8888888887755222211 111 134689999986 222 3566666666766554411
Q ss_pred cccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHhh
Q 009172 496 AIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVLQALHA 540 (541)
Q Consensus 496 a~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli~dL~~AL~~ 540 (541)
..+.+|+|++..++++.++.|.++|++
T Consensus 329 ------------------~~g~iRiS~~~~~t~edId~l~~al~~ 355 (361)
T 3m5u_A 329 ------------------ILGGIRASIYNALNLDQVKTLCEFMKE 355 (361)
T ss_dssp ------------------TTCSEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ------------------ccCeEEEEccCCCCHHHHHHHHHHHHH
Confidence 114599999998888888888888764
No 226
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.73 E-value=1.1e-16 Score=179.58 Aligned_cols=212 Identities=11% Similarity=0.128 Sum_probs=155.2
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHH-HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCC---
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGM-SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPA--- 283 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~-~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~--- 283 (541)
+.....++|+.+|+++|+++++++++|+ .|+..++.+++++||+|++++++|.++... +...|.++++++..
T Consensus 193 ~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~----l~lsGa~pv~v~~~~~~ 268 (715)
T 3n75_A 193 HSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHL----MMMSDVTPIYFRPTRNA 268 (715)
T ss_dssp TBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH----HHHSCCEEEEECCCBCT
T ss_pred CcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHH----HHHcCCEEEEEeccccc
Confidence 5567899999999999999999999996 899999999999999999999999997754 34468888887642
Q ss_pred ------------CHHHHHHhccCC-Cee---EEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc------
Q 009172 284 ------------DMEGLEAALNNN-NVS---LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------ 341 (541)
Q Consensus 284 ------------dle~Le~ai~~~-~tk---lV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~------ 341 (541)
|+++|+++++++ ++| +|++++| |++|.+.|+++|.++|++++ +++|++++.++..
T Consensus 269 ~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~ 345 (715)
T 3n75_A 269 YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEG 345 (715)
T ss_dssp TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTT
T ss_pred cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccc
Confidence 799999999742 245 8999999 89999999999999998764 7999998765421
Q ss_pred -cccccC--CcEE---EECCccccCCCCCceEEEEEeChHH-HHHHHHHhhhcC-CCccHHHHHHHHHhHHH-----HHH
Q 009172 342 -KALSLG--ADLV---LHSATKFIGGHNDVLAGSISGSGKL-VTQIRNLHHVLG-GALNPNAAYLIIRGMKT-----LHL 408 (541)
Q Consensus 342 -~~l~~g--aDiv---v~S~sK~lgg~g~v~gG~vv~~~~l-i~~l~~~~~~~g-~~~s~~~a~l~l~~l~t-----l~~ 408 (541)
..+..| +|++ ++|+||++++.. .+|++..++++ .+++......+. +.+++.....+..+++. -..
T Consensus 346 ~~al~~g~~aD~vii~~~S~hKtL~glt--qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~ 423 (715)
T 3n75_A 346 KCGMSGGRVEGKVIYETQSTHKLLAAFS--QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKR 423 (715)
T ss_dssp SSTTSSSCCTTCEEEEEECHHHHSSCCT--TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHH
T ss_pred ccccccCcCCCEEEEEEecccccccCCC--CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHH
Confidence 123333 6765 999999999863 36777765442 234444444443 34444433322323322 234
Q ss_pred HHHHHHHHHHHHHHHHHhCC
Q 009172 409 RVQQQNSTALRMAEILEAHP 428 (541)
Q Consensus 409 r~~~~~~na~~la~~L~~~p 428 (541)
+.++..++++++.+.|++.+
T Consensus 424 ~~~~l~~~a~~~r~~L~~i~ 443 (715)
T 3n75_A 424 LINGSIERAIKFRKEIKRLR 443 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56677788888888887654
No 227
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=99.56 E-value=4.6e-19 Score=190.71 Aligned_cols=240 Identities=15% Similarity=0.138 Sum_probs=158.7
Q ss_pred CCCchhHHHHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEe
Q 009172 206 RYGNPTTVVVEEKMSALE-GAESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVI 280 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~-g~~~~i~~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~v 280 (541)
+|.++...+|+++|++++ +.+.+++++||++|+..+++.. ...+|+||+.+..|++.......-....|+ .+..+
T Consensus 136 ~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~ 215 (465)
T 2yky_A 136 STQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLG 215 (465)
Confidence 467889999999999999 6678899999999999998764 244599999999998743211100012344 34445
Q ss_pred CCCCHHHHHHhccC--CCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCCCcccc---cccC--Cc
Q 009172 281 DPADMEGLEAALNN--NNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATPLNQKA---LSLG--AD 349 (541)
Q Consensus 281 d~~dle~Le~ai~~--~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~~~~~~---l~~g--aD 349 (541)
+..|+++|++++++ +++++|++|.+.|++|.+.+ +++|.++|+++|++||+||++. +..... ...| .|
T Consensus 216 ~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pD 294 (465)
T 2yky_A 216 VYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISAD 294 (465)
Confidence 56789999999973 25899999887777998877 9999999999999999999988 421111 1123 45
Q ss_pred EEEECCccccCCCCCceEEEEEeChHHHHHHHHH--h---hhcCCCccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHH
Q 009172 350 LVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNL--H---HVLGGALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAE 422 (541)
Q Consensus 350 ivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~--~---~~~g~~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~ 422 (541)
+ .+++|++++ | ...|++++++++++.+... . .......++..+.+++..++.+.. ..++..+..+++.+
T Consensus 295 i--~t~sK~lg~-G-~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~~~l~~ 370 (465)
T 2yky_A 295 L--TTLGKYIGG-G-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRA 370 (465)
Confidence 4 479999997 4 4578899999988887651 1 111223455666555555554422 23333444445555
Q ss_pred HHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC
Q 009172 423 ILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG 464 (541)
Q Consensus 423 ~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g 464 (541)
.|++.. .+ ++ + ....++.|.|++|++.+
T Consensus 371 ~L~~~~--~~--~~-~---------~~~v~g~G~~~~i~~~~ 398 (465)
T 2yky_A 371 NLNRIA--VE--NQ-A---------PLQFTGLGSLGTIHFSR 398 (465)
Confidence 444321 00 11 0 01124578899998864
No 228
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.70 E-value=2.7e-16 Score=169.48 Aligned_cols=275 Identities=14% Similarity=0.145 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHh--CCCcEEEeCCHHHHHHHHHHHhc-------c------------------CC---CEEEEcCCCCc
Q 009172 211 TTVVVEEKMSALE--GAESTVIMASGMSASTVMLLALV-------P------------------AG---GHIVTTTDCYR 260 (541)
Q Consensus 211 ~~~~Le~~LA~l~--g~~~~i~~sSG~~Ai~~al~all-------~------------------~G---D~VIv~~~~y~ 260 (541)
..++++++|+++. +.+.+++++||++|+..+++.+. + || ++||+.++.|+
T Consensus 111 l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yH 190 (472)
T 1ohv_A 111 FVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFH 190 (472)
T ss_dssp HHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCC
T ss_pred HHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcc
Confidence 4444555555565 44678999999999999997663 1 46 89999999998
Q ss_pred chHHHHHhhcc-----cCCcE-----EEEeC----C-------------CCHHHHHHhccCC-----CeeEEEEeCCCCC
Q 009172 261 KTRIFIETVLP-----KMGIT-----ATVID----P-------------ADMEGLEAALNNN-----NVSLFFTESPTNP 308 (541)
Q Consensus 261 ~~~~~~~~~l~-----~~Gi~-----v~~vd----~-------------~dle~Le~ai~~~-----~tklV~lesp~NP 308 (541)
+.......+.. ..+.. ...++ + .|+++|+++|+++ ++++|++|+.+|+
T Consensus 191 g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~ 270 (472)
T 1ohv_A 191 GRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSE 270 (472)
T ss_dssp CSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCT
T ss_pred cccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCC
Confidence 84332211111 11111 11111 0 1578888888751 4999999998899
Q ss_pred CCcccC----HHHHHHHHHhCCCEEEEEcCCCCC-Cc---ccccccC----CcEEEECCccc-cCCCCCceEEEEEeChH
Q 009172 309 FLRCVD----VKLVSDLCHKKGAIVCIDGTFATP-LN---QKALSLG----ADLVLHSATKF-IGGHNDVLAGSISGSGK 375 (541)
Q Consensus 309 tG~v~d----i~~Ia~la~~~gillvvDea~a~~-~~---~~~l~~g----aDivv~S~sK~-lgg~g~v~gG~vv~~~~ 375 (541)
+|.+++ +++|.++|++||++||+||+|... .. .....+| .|++ |++|. ++ ||+++ +++
T Consensus 271 ~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~--t~sK~~l~------GG~~~-~~~ 341 (472)
T 1ohv_A 271 GGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM--TFSKKMMT------GGFFH-KEE 341 (472)
T ss_dssp TTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEE--EECGGGSS------EEEEE-CGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEE--EEcccccc------CCccC-chh
Confidence 999887 999999999999999999998631 11 1112234 6765 57798 55 47776 655
Q ss_pred HHHHHHHHhhhcCC-CccHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHhCCCceEEeCCC-CCCCchhhhHhhhc
Q 009172 376 LVTQIRNLHHVLGG-ALNPNAAYLIIRGMKTLHL--RVQQQNSTALRMAEILEAHPKVKRVHYPG-LKSHPEHHIATQQM 451 (541)
Q Consensus 376 li~~l~~~~~~~g~-~~s~~~a~l~l~~l~tl~~--r~~~~~~na~~la~~L~~~p~v~~V~~Pg-l~s~p~~~l~~~~~ 451 (541)
+. .+.... ..++ ..++..+..++..++.+.. ..++..+..+++.+.|++... .+|. + ...
T Consensus 342 ~~-~~~~~~-~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~----~~~~~v----------~~~ 405 (472)
T 1ohv_A 342 FR-PNAPYR-IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA----RYPQFI----------SRV 405 (472)
T ss_dssp GS-CSSSSS-SCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH----HCTTTC----------EEE
T ss_pred hc-cccccc-ccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHh----hCCCcE----------Eee
Confidence 42 111111 1122 3466666666666654432 234445556666666654210 0111 0 001
Q ss_pred CCcccEEEEEEcCCHHHHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHH
Q 009172 452 TGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLK 531 (541)
Q Consensus 452 ~g~g~~vsf~l~g~~~~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~Ed~edli 531 (541)
++.|.+++|++++ ......+.+.|...++.+..+ ..+.|||+++...+++.+
T Consensus 406 ~~~g~~~~~~~~~-~~~~~~~~~~l~~~Gv~~~~~---------------------------g~~~iRi~~~~~~t~e~i 457 (472)
T 1ohv_A 406 RGRGTFCSFDTPD-ESIRNKLISIARNKGVMLGGC---------------------------GDKSIRFRPTLVFRDHHA 457 (472)
T ss_dssp EEETTEEEEECSS-HHHHHHHHHHHHHTTEECEEE---------------------------TTTEEEECCCTTCCHHHH
T ss_pred cCCceEEEEEeCC-hhHHHHHHHHHHHCCeEEecC---------------------------CCCEEEEECCCCCCHHHH
Confidence 2357799998864 234556666664444433211 146899988875554444
Q ss_pred HHHHHHH
Q 009172 532 ADVLQAL 538 (541)
Q Consensus 532 ~dL~~AL 538 (541)
+.+.++|
T Consensus 458 ~~~~~~l 464 (472)
T 1ohv_A 458 HLFLNIF 464 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 229
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.66 E-value=9.8e-15 Score=155.10 Aligned_cols=221 Identities=16% Similarity=0.085 Sum_probs=135.6
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHh-CC----C--cEEEeCCHHHHHHHHHH----HhccCCCEEEEcCCCCcchHHHHHh
Q 009172 200 ASFEYGRYGNPTTVVVEEKMSALE-GA----E--STVIMASGMSASTVMLL----ALVPAGGHIVTTTDCYRKTRIFIET 268 (541)
Q Consensus 200 ~~~~Y~R~~~p~~~~Le~~LA~l~-g~----~--~~i~~sSG~~Ai~~al~----all~~GD~VIv~~~~y~~~~~~~~~ 268 (541)
..+.|. +.....+|+++++++. |. . ..+.+.+|+.|+..++. .++.|||+|++++|+|+.....+
T Consensus 79 ~~~~Y~--p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~-- 154 (420)
T 4h51_A 79 LDYEYL--PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVV-- 154 (420)
T ss_dssp CCCCCC--CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHH--
T ss_pred CCCCCC--CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHH--
Confidence 345565 4456678888888875 32 1 23445677777665544 44679999999999999866544
Q ss_pred hcccCCcE-EEE---eCC----CCHHHHHHhcc--CCCeeEEEEeCCCCCCCcccC---HHHHHHHHHhCCCEEEEEcCC
Q 009172 269 VLPKMGIT-ATV---IDP----ADMEGLEAALN--NNNVSLFFTESPTNPFLRCVD---VKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 269 ~l~~~Gi~-v~~---vd~----~dle~Le~ai~--~~~tklV~lesp~NPtG~v~d---i~~Ia~la~~~gillvvDea~ 335 (541)
+..|.+ +.. .+. .|.+.+.+.+. +.+++++++.+|+||||.+++ +++|+++|+++++++++|++|
T Consensus 155 --~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y 232 (420)
T 4h51_A 155 --KAAGWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAY 232 (420)
T ss_dssp --HHTTCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred --HHcCCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhh
Confidence 333443 322 221 25666666553 225789999999999999987 668888999999999999998
Q ss_pred CCCCccc----c------ccc-CCcEEEECCccccCCCCCceEEEEEeChHHHH-------HHHHHhhhcCCCccHHHHH
Q 009172 336 ATPLNQK----A------LSL-GADLVLHSATKFIGGHNDVLAGSISGSGKLVT-------QIRNLHHVLGGALNPNAAY 397 (541)
Q Consensus 336 a~~~~~~----~------l~~-gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~-------~l~~~~~~~g~~~s~~~a~ 397 (541)
....... . .+. ..-+++.|+||.++..|.+ .|++++..+..+ .+...........+...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R-vG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~ 311 (420)
T 4h51_A 233 QGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSER-AGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGAR 311 (420)
T ss_dssp TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGC-EEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred hhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCc-eEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHH
Confidence 7643321 1 111 2348899999999877755 566665432222 2222222233334444444
Q ss_pred HHHHhHH----------HHHHHHHHHHHHHHHHHHHHHhC
Q 009172 398 LIIRGMK----------TLHLRVQQQNSTALRMAEILEAH 427 (541)
Q Consensus 398 l~l~~l~----------tl~~r~~~~~~na~~la~~L~~~ 427 (541)
++...+. .+....++..+.++.+.+.|++.
T Consensus 312 ~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~ 351 (420)
T 4h51_A 312 LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRL 351 (420)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333222 22333344556667777777764
No 230
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=99.58 E-value=2.3e-13 Score=143.10 Aligned_cols=255 Identities=16% Similarity=0.160 Sum_probs=156.1
Q ss_pred CCCCCCC--CchhHHHHH----HHHHHHhCCCc-----EEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHH-h
Q 009172 201 SFEYGRY--GNPTTVVVE----EKMSALEGAES-----TVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIE-T 268 (541)
Q Consensus 201 ~~~Y~R~--~~p~~~~Le----~~LA~l~g~~~-----~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~-~ 268 (541)
+|--.|| +...++++| ++..+++|++. .+=.-||+.|+.+++.++++|||+|+..+..+++....-. .
T Consensus 85 GyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~ 164 (490)
T 3ou5_A 85 GYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMS 164 (490)
T ss_dssp C----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC-------------
T ss_pred CCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccC
Confidence 4444444 344455544 45667889864 3667899999999999999999999999998887432110 0
Q ss_pred hccc---CCcEEEEe----CC----CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCC-
Q 009172 269 VLPK---MGITATVI----DP----ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA- 336 (541)
Q Consensus 269 ~l~~---~Gi~v~~v----d~----~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a- 336 (541)
-... .|.-+..+ +. .|.|++++.....++|+|++-.- -.-+..|++++.+||++.|++|++|-++-
T Consensus 165 ~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~S--aY~r~id~~~~reIAd~vGA~Lm~DmAHia 242 (490)
T 3ou5_A 165 DVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS--AYARLIDYARMREVCDEVKAHLLADMAHIS 242 (490)
T ss_dssp ---------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCS--SCCSCCCHHHHHHHHHHHTCEEEEECGGGH
T ss_pred CCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCc--cCccccCHHHHHHHHhhcccEEEechhhhh
Confidence 0011 11111111 11 38889988877667899998332 35577899999999999999999999953
Q ss_pred ----CCCcccccccCCcEEEECCccccCCCCCceEEEEEeCh---------------HHHHHHHHHh--hhcCCCccHHH
Q 009172 337 ----TPLNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSG---------------KLVTQIRNLH--HVLGGALNPNA 395 (541)
Q Consensus 337 ----~~~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~---------------~li~~l~~~~--~~~g~~~s~~~ 395 (541)
.+...+|+.+ +|+|..|.||.|.|+. ||++..++ ++.+++.... ...|+...-..
T Consensus 243 GLVA~g~~psP~~~-ADvVTtTTHKTLrGPr---GG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~I 318 (490)
T 3ou5_A 243 GLVAAKVIPSPFKH-ADIVTTTTHKTLRGAR---SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318 (490)
T ss_dssp HHHHTTSSCCGGGT-CSEEEEESSSTTCSCS---CEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHH
T ss_pred hhhcccccCCcccc-ceEEeccccccccCCC---ceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHH
Confidence 4566788887 9999999999999985 89988765 4566776532 22333322222
Q ss_pred HHHHH---HhH-HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC---CHHH
Q 009172 396 AYLII---RGM-KTLHLRVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG---DLTA 468 (541)
Q Consensus 396 a~l~l---~~l-~tl~~r~~~~~~na~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g---~~~~ 468 (541)
+..+. ..+ .......++..+|++.|++.|.+.. + ++..-+-.+ .++.+++.. +...
T Consensus 319 AAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G-~-~vvsGgTdn---------------HlvLvDl~~~g~tG~~ 381 (490)
T 3ou5_A 319 AAVAVALKQACTPMFREYSLQVLKNARAMADALLERG-Y-SLVSGGTDN---------------HLVLVDLRPKGLDGAR 381 (490)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTT-C-EEGGGSCSS---------------SEEEEECGGGTCCHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCC-C-eeecCCCCc---------------eEEEEeccccCCCHHH
Confidence 22221 111 2355667788899999999998864 2 232223222 377888752 2356
Q ss_pred HHHHHHHcCC
Q 009172 469 TIKFIDALKI 478 (541)
Q Consensus 469 ~~~~l~~L~~ 478 (541)
+++.++...+
T Consensus 382 ae~~Le~agI 391 (490)
T 3ou5_A 382 AERVLELVSI 391 (490)
T ss_dssp HHHHHHHTTE
T ss_pred HHHHHHHcCc
Confidence 6777776543
No 231
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.56 E-value=1.6e-13 Score=146.95 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=157.6
Q ss_pred CchhHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHhc--cCCCEEEEcCCCCcchHHHHHhh--cccCCcEEEEeCC
Q 009172 208 GNPTTVVVEEKMSALEGA-ESTVIMASGMSASTVMLLALV--PAGGHIVTTTDCYRKTRIFIETV--LPKMGITATVIDP 282 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~-~~~i~~sSG~~Ai~~al~all--~~GD~VIv~~~~y~~~~~~~~~~--l~~~Gi~v~~vd~ 282 (541)
.++...+|.+.|+++.+. +.+++++||++|+..+++... ...++||.....|++........ .......+..++.
T Consensus 125 ~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~ 204 (454)
T 4ao9_A 125 HNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY 204 (454)
T ss_dssp EESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT
T ss_pred CcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC
Confidence 456778899999998865 677888999999999987542 23478998888988832110000 0112335566778
Q ss_pred CCHHHHHHhccCC--CeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCC----CCcccccccCCcEEE
Q 009172 283 ADMEGLEAALNNN--NVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFAT----PLNQKALSLGADLVL 352 (541)
Q Consensus 283 ~dle~Le~ai~~~--~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~----~~~~~~l~~gaDivv 352 (541)
+|++.+++.++++ ++.+|++|...+..|.+.| +++|.++|++||++||+||++.. ...+.....-.|+++
T Consensus 205 nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tGR~G~~~a~e~~gv~PDi~t 284 (454)
T 4ao9_A 205 NDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTSRLAPHGLANKLGIRSDLTT 284 (454)
T ss_dssp TCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGGGGSTTCHHHHHTCCCSEEE
T ss_pred chHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcCCCccccchhccCCCCcEEE
Confidence 8999999888632 4899999999888898887 89999999999999999999752 111222333458876
Q ss_pred ECCccccCCCCCceEEEEEeChHHHHHHHHHh--hhcCCC--ccHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHh
Q 009172 353 HSATKFIGGHNDVLAGSISGSGKLVTQIRNLH--HVLGGA--LNPNAAYLIIRGMKTLH--LRVQQQNSTALRMAEILEA 426 (541)
Q Consensus 353 ~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~--~~~g~~--~s~~~a~l~l~~l~tl~--~r~~~~~~na~~la~~L~~ 426 (541)
+.|.++|+. ..|++++++++.+.+.... ..++++ .+|..+..++..|+.+. ...++..++.+++.+.|++
T Consensus 285 --~gK~lggG~--Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 285 --LGKYIGGGM--SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARLNA 360 (454)
T ss_dssp --EEGGGGTTS--SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --eccccCCCC--cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 789998753 4688889998887664311 112333 35777777666666542 2334445555566655543
Q ss_pred ----CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009172 427 ----HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD 463 (541)
Q Consensus 427 ----~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~ 463 (541)
++.+..| +|.|.|+.+++.
T Consensus 361 l~~~~~~~~~v------------------rg~G~m~gi~f~ 383 (454)
T 4ao9_A 361 LCANEGVAMQF------------------TGIGSLMNAHFV 383 (454)
T ss_dssp HHHHHTBSCEE------------------EEETTEEEEESC
T ss_pred HHhhCCCCEEE------------------eeeceEEEEEEe
Confidence 3332222 456788888874
No 232
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.56 E-value=5e-13 Score=143.37 Aligned_cols=286 Identities=16% Similarity=0.102 Sum_probs=174.5
Q ss_pred CchhHHHHHHHHHHHhCC---CcEEEeCCHHHHHHHHHHHh--ccCCCEEEEcCCCCcchHHHHHhhc----------cc
Q 009172 208 GNPTTVVVEEKMSALEGA---ESTVIMASGMSASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIETVL----------PK 272 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~---~~~i~~sSG~~Ai~~al~al--l~~GD~VIv~~~~y~~~~~~~~~~l----------~~ 272 (541)
+++...+|.++|+++... +.+++++||++|+..+++.. .....+||.....|++.....-... ..
T Consensus 105 ~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p 184 (456)
T 4atq_A 105 PYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGP 184 (456)
T ss_dssp CCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCS
T ss_pred CcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCC
Confidence 456677888999999854 45788899999999998632 2345789999889888432211110 01
Q ss_pred CCcEEEEeCCC-----------CHH-------HHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEEE
Q 009172 273 MGITATVIDPA-----------DME-------GLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIVC 330 (541)
Q Consensus 273 ~Gi~v~~vd~~-----------dle-------~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gillv 330 (541)
+...+..++.. +.+ .+++.+..+++.+|++|......|.+.+ +++|.++|++||+++|
T Consensus 185 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI 264 (456)
T 4atq_A 185 FAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFI 264 (456)
T ss_dssp CCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred ccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceE
Confidence 11234444321 222 2333333445899999998887887765 8899999999999999
Q ss_pred EEcCCCCC------CcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhhhcCCCccHHHHHHHHHhHH
Q 009172 331 IDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHHVLGGALNPNAAYLIIRGMK 404 (541)
Q Consensus 331 vDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~~~g~~~s~~~a~l~l~~l~ 404 (541)
+||++... +.+.....-.||++ +.|.++|.. ..|++++++++.+.+..........-+|..+.+++..|+
T Consensus 265 ~DEV~tG~GRtG~~~a~e~~gv~PDivt--~gK~lggg~--P~~av~~~~~i~~~~~~~~~~~Tf~gnpla~aaala~L~ 340 (456)
T 4atq_A 265 ADEVQSGFCRTGEWFAVDHEGVVPDIIT--MAKGIAGGL--PLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAID 340 (456)
T ss_dssp EECTTTTTTTTSSSSGGGGTTCCCSEEE--ECGGGGTTS--SCEEEEEEHHHHTTSCTTSSCCSSSSCHHHHHHHHHHHH
T ss_pred ecccccccCCccccccccccCCCCchhh--hhhcccCcC--CceeeEecHHHHhcccccCCCCCCCCChHHHHhhHHHHH
Confidence 99996531 22333344468887 679987653 467788888877665433221122346778877777777
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHh----C-----CCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcC------CHH
Q 009172 405 TLHLR--VQQQNSTALRMAEILEA----H-----PKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDG------DLT 467 (541)
Q Consensus 405 tl~~r--~~~~~~na~~la~~L~~----~-----p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g------~~~ 467 (541)
.+... .++..+..+++.+.|++ + +.|.. .+|.|.|+.|++.. +.+
T Consensus 341 ~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~------------------VRG~Gl~~giel~~~~~~~~~~~ 402 (456)
T 4atq_A 341 TMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGD------------------IRGRGAMLAIELVQPGSKEPNAE 402 (456)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEE------------------EEEETTEEEEEEBCTTSCCBCHH
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEE------------------eeecceEEEEEEecCCCCCcCHH
Confidence 65421 22222333333333332 2 22222 25678899999853 234
Q ss_pred HHHHHHHHcCCCceeecCCCcccceecCcccccccCCHHHHHhcCCCCCeEEEEec----CCCHHHHHHHHHHHHhh
Q 009172 468 ATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFG----VEDFEDLKADVLQALHA 540 (541)
Q Consensus 468 ~~~~~l~~L~~~~iavS~G~~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG----~Ed~edli~dL~~AL~~ 540 (541)
...++.+.+...|+-+... |...+.|||..- .|+.++.++.|+++|++
T Consensus 403 ~~~~v~~~~~~~Gvl~~~~-------------------------g~~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 403 LTKAVAAACLKEGVIILTC-------------------------GTYGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp HHHHHHHHHHHTTEECEEE-------------------------CTTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEec-------------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 4556666665445433211 112456777643 35677778888888864
No 233
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.54 E-value=1.1e-12 Score=139.62 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=141.6
Q ss_pred CCCCchhH----HHHHHHHHHHhCCCc---EEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCCcchHHHHHhhcccC
Q 009172 205 GRYGNPTT----VVVEEKMSALEGAES---TVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKM 273 (541)
Q Consensus 205 ~R~~~p~~----~~Le~~LA~l~g~~~---~i~~sSG~~Ai~~al~all~~----GD~VIv~~~~y~~~~~~~~~~l~~~ 273 (541)
...+.|.. +.+...+.+++|.+. .+++++++.++.+++++.+++ |+.||+++..|.+.... +...
T Consensus 89 ~~~~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kA----l~l~ 164 (450)
T 3bc8_A 89 KAAGSSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKS----MVTA 164 (450)
T ss_dssp SBHHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHH----HHHT
T ss_pred cccCCcHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHH----HHHc
Confidence 33455544 345566667778642 366666664444444444443 89999999999887643 4445
Q ss_pred CcEEEEeCC--------CCHHHHHHhccCCC--eeEEEEeCCC-CCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc-
Q 009172 274 GITATVIDP--------ADMEGLEAALNNNN--VSLFFTESPT-NPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ- 341 (541)
Q Consensus 274 Gi~v~~vd~--------~dle~Le~ai~~~~--tklV~lesp~-NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~- 341 (541)
|+..+++++ .|+++|+++|++++ .+++++.+|+ +.+|.+.|+++|+++||+||++++||++|+.....
T Consensus 165 Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~ 244 (450)
T 3bc8_A 165 GFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKC 244 (450)
T ss_dssp TCEEEEECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCeeEEEEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence 777777754 27999999996521 3455555665 44568899999999999999999999999865432
Q ss_pred -----ccccc-CCcEEEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCCCccHHHHHHHHH--hHHHHHHHHHH
Q 009172 342 -----KALSL-GADLVLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGGALNPNAAYLIIR--GMKTLHLRVQQ 412 (541)
Q Consensus 342 -----~~l~~-gaDivv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~~~s~~~a~l~l~--~l~tl~~r~~~ 412 (541)
..+.. ++|+++.|+||++..+- .++++.. ++++++++...........+.+..|..+. |.+.+...+++
T Consensus 245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~--~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~~~G~~g~~~~i~~ 322 (450)
T 3bc8_A 245 MHLIQQGARVGRIDAFVQSLDKNFMVPV--GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKE 322 (450)
T ss_dssp HHHHHHHHHHSCCCEEEEEHHHHHSCCS--SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhcccCCCEEEECCccCCCchh--ccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233 79999999999998764 3566654 55666655443211122222244444332 33445555666
Q ss_pred HHHHHHHHHHHHHhCC
Q 009172 413 QNSTALRMAEILEAHP 428 (541)
Q Consensus 413 ~~~na~~la~~L~~~p 428 (541)
..++++++.+.|++.+
T Consensus 323 ~~~~a~~l~~~l~~~~ 338 (450)
T 3bc8_A 323 RKEMFVYLSTQLKKLA 338 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhH
Confidence 7788888888887655
No 234
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.50 E-value=2.9e-13 Score=142.92 Aligned_cols=203 Identities=10% Similarity=0.131 Sum_probs=135.8
Q ss_pred HHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhccC----CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------
Q 009172 216 EEKMSALEGAE---STVIMASGMSASTVMLLALVPA----GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------ 282 (541)
Q Consensus 216 e~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~~----GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------ 282 (541)
.++|..+ |.. ..+++++++.++.+++++.+++ ||.||+++..|.+.+..+ ...|++.+++++
T Consensus 123 ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAl----iL~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 123 LDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSM----ITAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHH----HHTTCEEEEECEEEETTE
T ss_pred HHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHH----HHcCCeEEEEeeeecccc
Confidence 4444444 753 3455555555666666666664 499999999999876443 345788777764
Q ss_pred --CCHHHHHHhccCC---CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcc------cccccC-CcE
Q 009172 283 --ADMEGLEAALNNN---NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQ------KALSLG-ADL 350 (541)
Q Consensus 283 --~dle~Le~ai~~~---~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~~~------~~l~~g-aDi 350 (541)
.|+++++++|+++ .+.+|+..+++|..+.+.|+++|+++||+||++++|||+|+..+.. ..+.+| +|+
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~ 277 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA 277 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence 2789999999643 2344545444554557789999999999999999999999875521 234568 999
Q ss_pred EEECCccccCCCCCceEEEEEe-ChHHHHHHHHHhhhcCC-CccH-HHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHH
Q 009172 351 VLHSATKFIGGHNDVLAGSISG-SGKLVTQIRNLHHVLGG-ALNP-NAAYLII--RGMKTLHLRVQQQNSTALRMAEILE 425 (541)
Q Consensus 351 vv~S~sK~lgg~g~v~gG~vv~-~~~li~~l~~~~~~~g~-~~s~-~~a~l~l--~~l~tl~~r~~~~~~na~~la~~L~ 425 (541)
++.|.||.+-.+- .||++.. ++++++++..... |. +.+| .+.|+++ .|.+.+...+++..++++++.+.|+
T Consensus 278 vVqS~HK~llvpI--GG~ii~~~d~e~l~~~~~~yP--Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~ 353 (501)
T 3hl2_A 278 FVQSLDKNFMVPV--GGAIIAGFNDSFIQEISKMYP--GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK 353 (501)
T ss_dssp EEEEHHHHHCCCS--SCEEEEESCHHHHHHHHHTSC--SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecccccceeec--CceEEEeCCHHHHHHHHHhCC--CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986552 1344434 5567776643221 22 1223 3345443 3445566677888888899988888
Q ss_pred hC
Q 009172 426 AH 427 (541)
Q Consensus 426 ~~ 427 (541)
+.
T Consensus 354 ~l 355 (501)
T 3hl2_A 354 KL 355 (501)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 235
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=99.49 E-value=2.7e-12 Score=138.25 Aligned_cols=236 Identities=15% Similarity=0.144 Sum_probs=149.2
Q ss_pred CCchhHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHhc-------cCC-CEEEEcCCCCcchHH-HHHhh----cc
Q 009172 207 YGNPTTVVVEEKMSALEGA--ESTVIMASGMSASTVMLLALV-------PAG-GHIVTTTDCYRKTRI-FIETV----LP 271 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~g~--~~~i~~sSG~~Ai~~al~all-------~~G-D~VIv~~~~y~~~~~-~~~~~----l~ 271 (541)
..++...+|.++|+++.+. +.+++++||++|+..+++... +++ .+||.....|++... .+... .+
T Consensus 108 ~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~ 187 (473)
T 4e3q_A 108 RMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNS 187 (473)
T ss_dssp EEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGG
T ss_pred ccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCcccccccccccccc
Confidence 3566777899999999864 578889999999999987432 233 578888888888321 11100 01
Q ss_pred cCC---cEEEEeCCC----------C--------HHHHHHhcc---CCCeeEEEEeCCCCCCCcccC----HHHHHHHHH
Q 009172 272 KMG---ITATVIDPA----------D--------MEGLEAALN---NNNVSLFFTESPTNPFLRCVD----VKLVSDLCH 323 (541)
Q Consensus 272 ~~G---i~v~~vd~~----------d--------le~Le~ai~---~~~tklV~lesp~NPtG~v~d----i~~Ia~la~ 323 (541)
.++ ..+..++.. . .+++++.+. ++++.+|++|......|.+.+ +++|.++|+
T Consensus 188 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~ 267 (473)
T 4e3q_A 188 VFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILR 267 (473)
T ss_dssp GGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHH
T ss_pred ccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhc
Confidence 111 112222211 1 234444443 225889999998887887765 889999999
Q ss_pred hCCCEEEEEcCCCCC------CcccccccCCcEEEECCccccCCCCCceEEEEEeChHHHHHHHHHhh-----hcCCC--
Q 009172 324 KKGAIVCIDGTFATP------LNQKALSLGADLVLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH-----VLGGA-- 390 (541)
Q Consensus 324 ~~gillvvDea~a~~------~~~~~l~~gaDivv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~-----~~g~~-- 390 (541)
+||++||.||++... +.+.....-.|+++ +.|.++++. ...|++++++++.+.+..... .+|.+
T Consensus 268 ~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t--~~K~l~gG~-~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~ 344 (473)
T 4e3q_A 268 KYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAII--SSKNLTAGF-FPMGAVILGPELSKRLETAIEAIEEFPHGFTAS 344 (473)
T ss_dssp HTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEE--ECGGGGTTS-SCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTT
T ss_pred ccceEEeccCccccCCcccchhHHHhcCCCCChHH--hcccccCCC-CCcccccccHHHHHHhccccccccccccCCCCC
Confidence 999999999996532 12233334468887 789998653 246788889998887764321 12332
Q ss_pred ccHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHh---CCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEc
Q 009172 391 LNPNAAYLIIRGMKTLHLR--VQQQNSTALRMAEILEA---HPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVD 463 (541)
Q Consensus 391 ~s~~~a~l~l~~l~tl~~r--~~~~~~na~~la~~L~~---~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~ 463 (541)
-+|..+.+++..|+.+... .++..+...++.+.|++ +|.|..| +|.|.|+.|++.
T Consensus 345 Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v------------------RG~Gl~~gielv 404 (473)
T 4e3q_A 345 GHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEY------------------RGIGFMWALEAV 404 (473)
T ss_dssp TCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSTTEEEE------------------EEETTEEEEEEC
T ss_pred CCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcCCCeeEE------------------eecceEEEEEEe
Confidence 3578887777777765431 23333444555555543 3444333 457889999984
No 236
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=99.42 E-value=1.4e-12 Score=149.47 Aligned_cols=286 Identities=14% Similarity=0.132 Sum_probs=170.8
Q ss_pred CCCchhHHHHHHHHHHHhC---CCcEEEeCCHHHHHHHHHHHhc-----cC------------CCEEEEcCCCCcch-HH
Q 009172 206 RYGNPTTVVVEEKMSALEG---AESTVIMASGMSASTVMLLALV-----PA------------GGHIVTTTDCYRKT-RI 264 (541)
Q Consensus 206 R~~~p~~~~Le~~LA~l~g---~~~~i~~sSG~~Ai~~al~all-----~~------------GD~VIv~~~~y~~~-~~ 264 (541)
.+.++...+|.++|+++.+ .+.+++++||++|+..++...+ +. ..+||..+..|++. ..
T Consensus 420 ~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~g 499 (831)
T 4a0g_A 420 ENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLG 499 (831)
T ss_dssp TEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHH
T ss_pred ccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCcee
Confidence 3557788899999999987 3578999999999998886542 12 23688888888773 32
Q ss_pred HHHhhc----cc------C-CcE---------------EEEeCC------------CC------------------HHHH
Q 009172 265 FIETVL----PK------M-GIT---------------ATVIDP------------AD------------------MEGL 288 (541)
Q Consensus 265 ~~~~~l----~~------~-Gi~---------------v~~vd~------------~d------------------le~L 288 (541)
.+...- .. + +.. ....+. .+ .+.|
T Consensus 500 als~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 579 (831)
T 4a0g_A 500 AMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYL 579 (831)
T ss_dssp HHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHH
T ss_pred eeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHH
Confidence 221100 00 0 100 011110 12 2567
Q ss_pred HHhcc-------CCCeeEEEEeCC-CCCCCcccC----HHHHHHHHHhCCCEEEEEcCCCCC------CcccccccCCcE
Q 009172 289 EAALN-------NNNVSLFFTESP-TNPFLRCVD----VKLVSDLCHKKGAIVCIDGTFATP------LNQKALSLGADL 350 (541)
Q Consensus 289 e~ai~-------~~~tklV~lesp-~NPtG~v~d----i~~Ia~la~~~gillvvDea~a~~------~~~~~l~~gaDi 350 (541)
++.|+ .+++.+|++|.. .+..|.+.+ +++|.++|++||++||+||++... +.......-.|+
T Consensus 580 e~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi 659 (831)
T 4a0g_A 580 SKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDI 659 (831)
T ss_dssp HHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSE
T ss_pred HHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcE
Confidence 77775 235889999986 788887765 889999999999999999986532 111222233577
Q ss_pred EEECCccccCCCCCceEEEEEeChHHHHHHHHHhh----hcC--CCccHHHHHHHHHhHHHHHHH--HHHHHHH------
Q 009172 351 VLHSATKFIGGHNDVLAGSISGSGKLVTQIRNLHH----VLG--GALNPNAAYLIIRGMKTLHLR--VQQQNST------ 416 (541)
Q Consensus 351 vv~S~sK~lgg~g~v~gG~vv~~~~li~~l~~~~~----~~g--~~~s~~~a~l~l~~l~tl~~r--~~~~~~n------ 416 (541)
++ ++|.++++ -+..|++++++++++.+..... .+| ...+|..+..++..|+.+... .++..++
T Consensus 660 it--lsK~L~gG-~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~ 736 (831)
T 4a0g_A 660 AC--FAKLLTGG-MVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRE 736 (831)
T ss_dssp EE--ECGGGGTT-SSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCC
T ss_pred EE--EecccccC-ccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 75 88999863 1346888899988877643211 122 334688887777777655311 0011000
Q ss_pred --HHHHHHHHHhCCCceEEeCCCCCCCchhhhHhhhcCCcccEEEEEEcCC-------HHHHHHHHHHcCCCceeecCCC
Q 009172 417 --ALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGD-------LTATIKFIDALKIPYIAPSFGG 487 (541)
Q Consensus 417 --a~~la~~L~~~p~v~~V~~Pgl~s~p~~~l~~~~~~g~g~~vsf~l~g~-------~~~~~~~l~~L~~~~iavS~G~ 487 (541)
.+.+.+.+.++|.|..+ ++.|.|+.|++..+ ...+.++.+.+...|+.+.
T Consensus 737 ~l~~~l~~~l~~~~~v~~v------------------rg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~--- 795 (831)
T 4a0g_A 737 LWDEELVQQISSHSAVQRV------------------VVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR--- 795 (831)
T ss_dssp CSCHHHHHHHHHSTTEEEE------------------EEETTEEEEEEC---------CHHHHHHHHHHHHTTEECC---
T ss_pred HHHHHHHHHHhhCCCceeE------------------eecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEE---
Confidence 11233445555555444 34678999998642 1234556666554443332
Q ss_pred cccceecCcccccccCCHHHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHhh
Q 009172 488 CESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGV----EDFEDLKADVLQALHA 540 (541)
Q Consensus 488 ~~sl~~~pa~~~~~~~~~~~~~~~gi~~~~IRlSvG~----Ed~edli~dL~~AL~~ 540 (541)
| ..+.|||+... ++++++++.|.++|++
T Consensus 796 -------p------------------~g~~lrl~pp~~~t~e~id~~~~~l~~~l~~ 827 (831)
T 4a0g_A 796 -------P------------------LGNVIYLMCGPCTSPEICRRLLTKLYKRLGE 827 (831)
T ss_dssp -------C------------------BTTEEEEECCTTCCHHHHHHHHHHHHHHHTT
T ss_pred -------e------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 13678988543 4555666666666654
No 237
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=51.91 E-value=70 Score=25.30 Aligned_cols=90 Identities=16% Similarity=0.260 Sum_probs=54.2
Q ss_pred cEEEeCCHHHHHHHHHHHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCC
Q 009172 227 STVIMASGMSASTVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 227 ~~i~~sSG~~Ai~~al~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp 305 (541)
..+++..|.-+..+ +..+.+.| .+|++.+..-. -... +...++.....|..+.+.+++.+.. ..+|+.+.|
T Consensus 7 ~v~I~G~G~iG~~~-~~~l~~~g~~~v~~~~r~~~----~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~--~d~vi~~~~ 78 (118)
T 3ic5_A 7 NICVVGAGKIGQMI-AALLKTSSNYSVTVADHDLA----ALAV-LNRMGVATKQVDAKDEAGLAKALGG--FDAVISAAP 78 (118)
T ss_dssp EEEEECCSHHHHHH-HHHHHHCSSEEEEEEESCHH----HHHH-HHTTTCEEEECCTTCHHHHHHHTTT--CSEEEECSC
T ss_pred eEEEECCCHHHHHH-HHHHHhCCCceEEEEeCCHH----HHHH-HHhCCCcEEEecCCCHHHHHHHHcC--CCEEEECCC
Confidence 35566666544332 33445567 56665443221 1212 2245778877888888999988863 677777554
Q ss_pred CCCCCcccCHHHHHHHHHhCCCEEE
Q 009172 306 TNPFLRCVDVKLVSDLCHKKGAIVC 330 (541)
Q Consensus 306 ~NPtG~v~di~~Ia~la~~~gillv 330 (541)
.. ....+.+.|.+.|+..+
T Consensus 79 ~~------~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 79 FF------LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp GG------GHHHHHHHHHHTTCEEE
T ss_pred ch------hhHHHHHHHHHhCCCEE
Confidence 31 23677888888888754
No 238
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=48.13 E-value=1.5e+02 Score=27.17 Aligned_cols=122 Identities=9% Similarity=0.122 Sum_probs=68.8
Q ss_pred CchhHHHHHHHHHHHhCCC---cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE---EEEeC
Q 009172 208 GNPTTVVVEEKMSALEGAE---STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT---ATVID 281 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~---~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~---v~~vd 281 (541)
..|....+-..++...+.. .++=+.+|+......+...+.++.+|+..+..-. .....+..++..|+. +.++.
T Consensus 37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~g~~~~~i~~~~ 115 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESE-HQRQAKALFREAGYSPSRVRFLL 115 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHH-HHHHHHHHHHHTTCCGGGEEEEC
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHcCCCcCcEEEEE
Confidence 3577777878888888776 6777777775554544444566778887765533 233344445555543 55554
Q ss_pred CCCHHHHHHhccCCCeeEEEEeCCCCCCCccc-CHHHHHHHHHhCCCEEEEEcCC
Q 009172 282 PADMEGLEAALNNNNVSLFFTESPTNPFLRCV-DVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 282 ~~dle~Le~ai~~~~tklV~lesp~NPtG~v~-di~~Ia~la~~~gillvvDea~ 335 (541)
. |..++...+.+.+..+|++.... .... -++++.++.+ -|.++++|++.
T Consensus 116 g-da~~~l~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~Lk-pGG~lv~dn~~ 165 (221)
T 3dr5_A 116 S-RPLDVMSRLANDSYQLVFGQVSP---MDLKALVDAAWPLLR-RGGALVLADAL 165 (221)
T ss_dssp S-CHHHHGGGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEE-EEEEEEETTTT
T ss_pred c-CHHHHHHHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcC-CCcEEEEeCCC
Confidence 3 44443333322347899884321 1111 1334444443 36778888874
No 239
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.08 E-value=27 Score=30.93 Aligned_cols=67 Identities=10% Similarity=-0.006 Sum_probs=45.1
Q ss_pred CCcchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC
Q 009172 258 CYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326 (541)
Q Consensus 258 ~y~~~~~~~~~~l~~~Gi~v~~vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g 326 (541)
.|.--..++...++..|.++.+... ..++++.+++.+.++.+|.+..-. +.....++++.+.+++.+
T Consensus 30 ~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~--~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 30 GHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILN--GAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp SCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESS--SCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeec--hhhHHHHHHHHHHHHhcC
Confidence 4444445566678888999988764 367888777765567888885443 344556778887777754
No 240
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=46.56 E-value=1e+02 Score=27.04 Aligned_cols=41 Identities=7% Similarity=0.051 Sum_probs=26.1
Q ss_pred CCCcccCHHHHHHHHHhCCCEEE--EEcCCCCCCcccccccCCcEEEEC
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVC--IDGTFATPLNQKALSLGADLVLHS 354 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillv--vDea~a~~~~~~~l~~gaDivv~S 354 (541)
..|...++-++++.+++.|+.+| .|+. ..++..-+|+++.-
T Consensus 105 ~sG~t~~~~~~~~~ak~~g~~vi~IT~~~------~s~la~~ad~~l~~ 147 (183)
T 2xhz_A 105 NSGESSEITALIPVLKRLHVPLICITGRP------ESSMARAADVHLCV 147 (183)
T ss_dssp SSSCCHHHHHHHHHHHTTTCCEEEEESCT------TSHHHHHSSEEEEC
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEECCC------CChhHHhCCEEEEe
Confidence 45777788899999999886544 4432 23444446766543
No 241
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=41.89 E-value=1.6e+02 Score=28.27 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=51.2
Q ss_pred cccC-CcEEEEeCCC-CHHHHHHhccCCCeeEEEEeCCCCCCC--cccCHHHHHHHHHhCC----CEEEEEcCCCCCCcc
Q 009172 270 LPKM-GITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFL--RCVDVKLVSDLCHKKG----AIVCIDGTFATPLNQ 341 (541)
Q Consensus 270 l~~~-Gi~v~~vd~~-dle~Le~ai~~~~tklV~lesp~NPtG--~v~di~~Ia~la~~~g----illvvDea~a~~~~~ 341 (541)
++.. |.++.++-.. .++++.+++.++++.+|.+..-.. ++ .+..+.++.+.+++.| +.+++=....+. .
T Consensus 152 L~~~~G~eVi~LG~~vp~e~iv~aa~e~~~d~VglS~l~t-~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~--~ 228 (262)
T 1xrs_B 152 LERYEMIDAYNLGSQVANEDFIKKAVELEADVLLVSQTVT-QKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINN--E 228 (262)
T ss_dssp GGGCTTEEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCC-TTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCH--H
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEEeecC-CccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCH--H
Confidence 7788 9999877543 677777766655688888844432 22 3455777888887765 778775552211 1
Q ss_pred cccccCCcEEEEC
Q 009172 342 KALSLGADLVLHS 354 (541)
Q Consensus 342 ~~l~~gaDivv~S 354 (541)
.....|+|.+...
T Consensus 229 ~a~~iGad~~~~d 241 (262)
T 1xrs_B 229 IAKELGYDAGFGP 241 (262)
T ss_dssp HHHTTTCSEEECT
T ss_pred HHHHcCCeEEECC
Confidence 1234567766543
No 242
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=41.40 E-value=46 Score=32.40 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=43.8
Q ss_pred CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHH
Q 009172 248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318 (541)
Q Consensus 248 ~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~I 318 (541)
++..+++..+.|+- +++.+|+++..+.. . ++.+|.+.++++++++||.|.-.++ +.+
T Consensus 178 ~~~~~v~~H~af~Y-------f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~ 243 (286)
T 3gi1_A 178 RSKTFVTQHTAFSY-------LAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNP-------KIA 243 (286)
T ss_dssp SCCEEEEEESCCHH-------HHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCT-------HHH
T ss_pred CCCEEEEECCchHH-------HHHHCCCeEeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHH
Confidence 46788887666642 35567877654321 1 3556666666667999999654433 333
Q ss_pred HHHHHhCCCEEEE
Q 009172 319 SDLCHKKGAIVCI 331 (541)
Q Consensus 319 a~la~~~gillvv 331 (541)
..++++.|+.+++
T Consensus 244 ~~la~~~g~~v~~ 256 (286)
T 3gi1_A 244 HAIAKSTGAKVKT 256 (286)
T ss_dssp HHHHHTTTCEEEE
T ss_pred HHHHHHhCCeEEE
Confidence 4567888888764
No 243
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=40.23 E-value=1.5e+02 Score=29.17 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=56.9
Q ss_pred CcEEEeCCHHHHHHHHHHHhccCCC-EEEEcCCC---CcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEE
Q 009172 226 ESTVIMASGMSASTVMLLALVPAGG-HIVTTTDC---YRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFF 301 (541)
Q Consensus 226 ~~~i~~sSG~~Ai~~al~all~~GD-~VIv~~~~---y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~ 301 (541)
..++++..|..+ ..++..|.+.|- +|.+.+.. ......+...+....+.++..++..+.+++.+.+.+ ..+|+
T Consensus 155 k~~lVlGaGG~g-~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~--aDiII 231 (315)
T 3tnl_A 155 KKMTICGAGGAA-TAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAE--SVIFT 231 (315)
T ss_dssp SEEEEECCSHHH-HHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHT--CSEEE
T ss_pred CEEEEECCChHH-HHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcC--CCEEE
Confidence 457777766432 233344445664 66665544 433333333333345666766776777788877764 56888
Q ss_pred EeCCCCCCCc----cc-CHHHHHHHHHhCCCEEEEEcCCCC
Q 009172 302 TESPTNPFLR----CV-DVKLVSDLCHKKGAIVCIDGTFAT 337 (541)
Q Consensus 302 lesp~NPtG~----v~-di~~Ia~la~~~gillvvDea~a~ 337 (541)
-++|....+. .. +.+.+ + .-.+|+|-+|..
T Consensus 232 NaTp~Gm~~~~~~~p~~~~~~l----~--~~~~V~DlvY~P 266 (315)
T 3tnl_A 232 NATGVGMKPFEGETLLPSADML----R--PELIVSDVVYKP 266 (315)
T ss_dssp ECSSTTSTTSTTCCSCCCGGGC----C--TTCEEEESCCSS
T ss_pred ECccCCCCCCCCCCCCCcHHHc----C--CCCEEEEeccCC
Confidence 7777532221 12 22222 1 335788999864
No 244
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=40.11 E-value=75 Score=28.05 Aligned_cols=110 Identities=21% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCC--HHHHHH
Q 009172 213 VVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD--MEGLEA 290 (541)
Q Consensus 213 ~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~d--le~Le~ 290 (541)
+.+++.+..+.+++..++++.|.....+.... ..+.+.|..+..++.+. ......
T Consensus 27 ~~l~~~~~~i~~a~~I~i~G~G~S~~~a~~~~-----------------------~~l~~~g~~~~~~~~~~~~~~~~~~ 83 (187)
T 3sho_A 27 EAIEAAVEAICRADHVIVVGMGFSAAVAVFLG-----------------------HGLNSLGIRTTVLTEGGSTLTITLA 83 (187)
T ss_dssp HHHHHHHHHHHHCSEEEEECCGGGHHHHHHHH-----------------------HHHHHTTCCEEEECCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEecCchHHHHHHHH-----------------------HHHHhcCCCEEEecCCchhHHHHHh
Confidence 34555555555677888888887432221110 11122344444443211 111223
Q ss_pred hccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEE--EEcCCCCCCcccccccCCcEEEECCc
Q 009172 291 ALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC--IDGTFATPLNQKALSLGADLVLHSAT 356 (541)
Q Consensus 291 ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillv--vDea~a~~~~~~~l~~gaDivv~S~s 356 (541)
.++++ .-+|++ ...|...++-++++.++++|+.+| .|.. ..++...+|+++...+
T Consensus 84 ~~~~~-d~~i~i----S~sG~t~~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ad~~l~~~~ 140 (187)
T 3sho_A 84 NLRPT-DLMIGV----SVWRYLRDTVAALAGAAERGVPTMALTDSS------VSPPARIADHVLVAAT 140 (187)
T ss_dssp TCCTT-EEEEEE----CCSSCCHHHHHHHHHHHHTTCCEEEEESCT------TSHHHHHCSEEEECCC
T ss_pred cCCCC-CEEEEE----eCCCCCHHHHHHHHHHHHCCCCEEEEeCCC------CCcchhhCcEEEEecC
Confidence 34443 444444 335777788888999999887554 3332 2344444777775433
No 245
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=39.51 E-value=1.3e+02 Score=29.20 Aligned_cols=59 Identities=12% Similarity=0.074 Sum_probs=34.6
Q ss_pred HHHhccCCCEEEEcCCCCcchHHHHHhhccc------CCcEEEEeCCCCHHHHHHhccCCCeeEEEE
Q 009172 242 LLALVPAGGHIVTTTDCYRKTRIFIETVLPK------MGITATVIDPADMEGLEAALNNNNVSLFFT 302 (541)
Q Consensus 242 l~all~~GD~VIv~~~~y~~~~~~~~~~l~~------~Gi~v~~vd~~dle~Le~ai~~~~tklV~l 302 (541)
+..|++.|.+|++....-......+...... .++++...|..|.+.++++++. +..|+-
T Consensus 42 ~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~Vih 106 (351)
T 3ruf_A 42 LEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG--VDHVLH 106 (351)
T ss_dssp HHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT--CSEEEE
T ss_pred HHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC--CCEEEE
Confidence 3456677887766543222222222222111 4678878888899999999873 556554
No 246
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=37.50 E-value=46 Score=28.85 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=51.8
Q ss_pred HHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCC---H----HHHHHhccCCCeeEEEEeCCCCC
Q 009172 236 SASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD---M----EGLEAALNNNNVSLFFTESPTNP 308 (541)
Q Consensus 236 ~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~d---l----e~Le~ai~~~~tklV~lesp~NP 308 (541)
..+.-....+.+-|=+|+.+. +|.. .++..|+++..+.... - .++.+.|+++++.+|+. +|..-
T Consensus 37 ~~l~~~a~~l~~lGf~i~AT~----GTa~----~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVIn-t~~~~ 107 (143)
T 2yvq_A 37 PRFLGVAEQLHNEGFKLFATE----ATSD----WLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVIN-LPNNN 107 (143)
T ss_dssp HHHHHHHHHHHTTTCEEEEEH----HHHH----HHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEE-CCCCC
T ss_pred HHHHHHHHHHHHCCCEEEECc----hHHH----HHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEE-CCCCC
Confidence 334344455556677776643 4433 3345677777764321 1 24666777666888775 55421
Q ss_pred CCcccCHHHHHHHHHhCCCEEEE
Q 009172 309 FLRCVDVKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 309 tG~v~di~~Ia~la~~~gillvv 331 (541)
.....|-..|.+.|-+|+++++.
T Consensus 108 ~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 108 TKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp GGGHHHHHHHHHHHHHTTCCEEC
T ss_pred CcCCccHHHHHHHHHHhCCCeEc
Confidence 22234666899999999999874
No 247
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.12 E-value=68 Score=29.31 Aligned_cols=82 Identities=16% Similarity=0.133 Sum_probs=53.1
Q ss_pred EEEEcC---CCCcchHHHHHhhcccCCcEEEEeCCC-CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC
Q 009172 251 HIVTTT---DCYRKTRIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG 326 (541)
Q Consensus 251 ~VIv~~---~~y~~~~~~~~~~l~~~Gi~v~~vd~~-dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g 326 (541)
+|++.. ..|.--..++...++..|.++.++..+ .++++.+++.+.++.+|.+..-. +.....++++.+..++.+
T Consensus 90 ~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~~ 167 (210)
T 1y80_A 90 KIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSALL--TTTMMNMKSTIDALIAAG 167 (210)
T ss_dssp EEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECCS--GGGTHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccc--cccHHHHHHHHHHHHhcC
Confidence 555442 234444455666788899999987654 57888777754457888884432 334456778887777754
Q ss_pred ----CEEEEEcC
Q 009172 327 ----AIVCIDGT 334 (541)
Q Consensus 327 ----illvvDea 334 (541)
+.+++=..
T Consensus 168 ~~~~~~v~vGG~ 179 (210)
T 1y80_A 168 LRDRVKVIVGGA 179 (210)
T ss_dssp CGGGCEEEEEST
T ss_pred CCCCCeEEEECC
Confidence 77777544
No 248
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=36.89 E-value=63 Score=28.42 Aligned_cols=88 Identities=13% Similarity=0.057 Sum_probs=49.2
Q ss_pred CcEEEeCCHHHHHHHHHHHhccC-CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHh--ccCCCeeEEEE
Q 009172 226 ESTVIMASGMSASTVMLLALVPA-GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA--LNNNNVSLFFT 302 (541)
Q Consensus 226 ~~~i~~sSG~~Ai~~al~all~~-GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~a--i~~~~tklV~l 302 (541)
...+++..|.-+..++ ..|.+. |-.|++.+..- .... .+...|+.+...|..+.+.++++ +. +..+|++
T Consensus 40 ~~v~IiG~G~~G~~~a-~~L~~~~g~~V~vid~~~----~~~~-~~~~~g~~~~~gd~~~~~~l~~~~~~~--~ad~vi~ 111 (183)
T 3c85_A 40 AQVLILGMGRIGTGAY-DELRARYGKISLGIEIRE----EAAQ-QHRSEGRNVISGDATDPDFWERILDTG--HVKLVLL 111 (183)
T ss_dssp CSEEEECCSHHHHHHH-HHHHHHHCSCEEEEESCH----HHHH-HHHHTTCCEEECCTTCHHHHHTBCSCC--CCCEEEE
T ss_pred CcEEEECCCHHHHHHH-HHHHhccCCeEEEEECCH----HHHH-HHHHCCCCEEEcCCCCHHHHHhccCCC--CCCEEEE
Confidence 3678888887554443 233444 65555544322 1122 23345887777787788878776 44 3678887
Q ss_pred eCCCCCCCcccCHHHHHHHHHhCC
Q 009172 303 ESPTNPFLRCVDVKLVSDLCHKKG 326 (541)
Q Consensus 303 esp~NPtG~v~di~~Ia~la~~~g 326 (541)
..++. .....+...+++.+
T Consensus 112 ~~~~~-----~~~~~~~~~~~~~~ 130 (183)
T 3c85_A 112 AMPHH-----QGNQTALEQLQRRN 130 (183)
T ss_dssp CCSSH-----HHHHHHHHHHHHTT
T ss_pred eCCCh-----HHHHHHHHHHHHHC
Confidence 66541 12234455666644
No 249
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=36.43 E-value=59 Score=32.08 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHH
Q 009172 248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318 (541)
Q Consensus 248 ~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~I 318 (541)
++..+++..+.|+ .+++.+|++...+.. . ++.+|.+.++++++++||.|.-.+ -+.+
T Consensus 189 ~~~~~v~~H~af~-------Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~-------~~~~ 254 (312)
T 2o1e_A 189 EKKEFITQHTAFG-------YLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIAS-------SKVA 254 (312)
T ss_dssp SCCEEEESSCTTH-------HHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCC-------HHHH
T ss_pred CCCEEEEECCchH-------HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC-------hHHH
Confidence 4677888766553 235667887665421 1 355666667766789998864443 2445
Q ss_pred HHHHHhCCCEEE
Q 009172 319 SDLCHKKGAIVC 330 (541)
Q Consensus 319 a~la~~~gillv 330 (541)
..++++.|+.++
T Consensus 255 ~~ia~e~g~~v~ 266 (312)
T 2o1e_A 255 DTLASEIGAKTE 266 (312)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHHHHhCCcEE
Confidence 566788888764
No 250
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=36.14 E-value=87 Score=30.56 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=38.9
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CEEEE
Q 009172 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCI 331 (541)
Q Consensus 271 ~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g-illvv 331 (541)
...++++...|..|.+.+.++++..+...|+..... ..+.....|.+.|++.| +..++
T Consensus 58 ~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~---~n~~~~~~l~~aa~~~g~v~~~v 116 (346)
T 3i6i_A 58 EDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG---ESILDQIALVKAMKAVGTIKRFL 116 (346)
T ss_dssp HHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG---GGGGGHHHHHHHHHHHCCCSEEE
T ss_pred HhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch---hhHHHHHHHHHHHHHcCCceEEe
Confidence 346889988899999999999973235566553322 12333468888888888 64444
No 251
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=35.84 E-value=1e+02 Score=30.52 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=44.0
Q ss_pred hccCCCEEEEcCCCCcc------hHHHHHhhcccCCcEEEEeCCC----------C---HHHHHHhccCCCeeEEEEeCC
Q 009172 245 LVPAGGHIVTTTDCYRK------TRIFIETVLPKMGITATVIDPA----------D---MEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 245 ll~~GD~VIv~~~~y~~------~~~~~~~~l~~~Gi~v~~vd~~----------d---le~Le~ai~~~~tklV~lesp 305 (541)
.+++||+|-+..|..+. ........++.+|.+|++-+.. | .++|.+++.+..+++|+..--
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 47899999888777542 1222234567789999876521 1 456777776556999987444
Q ss_pred CCCCCcccC
Q 009172 306 TNPFLRCVD 314 (541)
Q Consensus 306 ~NPtG~v~d 314 (541)
..-+-+++|
T Consensus 88 G~g~~rlL~ 96 (327)
T 4h1h_A 88 GFNSNQLLP 96 (327)
T ss_dssp CSCGGGGGG
T ss_pred chhHHHHhh
Confidence 433445544
No 252
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=35.83 E-value=1.1e+02 Score=30.98 Aligned_cols=70 Identities=9% Similarity=-0.007 Sum_probs=42.8
Q ss_pred hccCCCEEEEcCCCCcch------HHHHHhhcccCCcEEEEeCCC----------C---HHHHHHhccCCCeeEEEEeCC
Q 009172 245 LVPAGGHIVTTTDCYRKT------RIFIETVLPKMGITATVIDPA----------D---MEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 245 ll~~GD~VIv~~~~y~~~------~~~~~~~l~~~Gi~v~~vd~~----------d---le~Le~ai~~~~tklV~lesp 305 (541)
.+++||+|-+..|..+.. .......++.+|.+|++-+.. | .++|.+++.+..+++|+..--
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 367899988888876532 112223466788888865421 1 566777776556899987444
Q ss_pred CCCCCcccC
Q 009172 306 TNPFLRCVD 314 (541)
Q Consensus 306 ~NPtG~v~d 314 (541)
..-+-+++|
T Consensus 119 Gyga~rlLp 127 (371)
T 3tla_A 119 GDNSNSLLP 127 (371)
T ss_dssp CSCGGGGGG
T ss_pred cccHHHHHh
Confidence 333444444
No 253
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=35.79 E-value=2.4e+02 Score=25.22 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dle 286 (541)
++....+-..++.+.+...++=+.+|+......+...+.++.+|+..+..-.. ....+..++..|+ .+.++..+-.+
T Consensus 54 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~g~~~~i~~~~~d~~~ 132 (229)
T 2avd_A 54 TCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQP-PELGRPLWRQAEAEHKIDLRLKPALE 132 (229)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHH-HHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHH-HHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence 45555555666666666677777777644334343334446677776654332 2333333333343 34444332223
Q ss_pred HHHHhccC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 287 GLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 287 ~Le~ai~~---~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
.+...... .+..+|++..+. .....-++.+.++.+. |..+++|++.
T Consensus 133 ~~~~~~~~~~~~~~D~v~~d~~~--~~~~~~l~~~~~~L~p-gG~lv~~~~~ 181 (229)
T 2avd_A 133 TLDELLAAGEAGTFDVAVVDADK--ENCSAYYERCLQLLRP-GGILAVLRVL 181 (229)
T ss_dssp HHHHHHHTTCTTCEEEEEECSCS--TTHHHHHHHHHHHEEE-EEEEEEECCS
T ss_pred HHHHHHhcCCCCCccEEEECCCH--HHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence 23332221 246788884331 1111114444444443 5566777764
No 254
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=35.65 E-value=1.5e+02 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.071 Sum_probs=25.6
Q ss_pred CCCcccCHHHHHHHHHhCCCEEE--EEcCCCCCCcccccccCCcEEEE
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVC--IDGTFATPLNQKALSLGADLVLH 353 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillv--vDea~a~~~~~~~l~~gaDivv~ 353 (541)
..|...++-++++.|++.|+.+| .|. ...++..-+|+++.
T Consensus 88 ~sG~t~~~~~~~~~ak~~g~~vi~IT~~------~~s~l~~~ad~~l~ 129 (186)
T 1m3s_A 88 GSGETKSLIHTAAKAKSLHGIVAALTIN------PESSIGKQADLIIR 129 (186)
T ss_dssp SSSCCHHHHHHHHHHHHTTCEEEEEESC------TTSHHHHHCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEEEEEECC------CCCchHHhCCEEEE
Confidence 34776777888999999997665 332 22344444677664
No 255
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=35.53 E-value=42 Score=31.18 Aligned_cols=36 Identities=8% Similarity=-0.077 Sum_probs=31.5
Q ss_pred CeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE
Q 009172 296 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 296 ~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvv 331 (541)
++..|++|-..|+.|.....+++.++|++||+.++.
T Consensus 159 ~Pa~vicEi~~~~dG~mar~~~l~~fA~~h~l~iit 194 (204)
T 1tks_A 159 QPAGVICELVRDEDGLMMRLDDCIQFGKKHGIKIIN 194 (204)
T ss_dssp CSBEEEEEBBCTTTCCBCBHHHHHHHHHHHTCCEEE
T ss_pred CceEEEEEEeECCCCCcCCHHHHHHHHHHcCCcEEE
Confidence 367888888878999999999999999999988763
No 256
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=35.17 E-value=79 Score=30.16 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=45.1
Q ss_pred hcccCCcEEEEe--CCCCHHHHHHhccCCCeeEEEEeCCCCCC--Ccc-cC--HH---HHHHHHHh--CCCEEEEEcCCC
Q 009172 269 VLPKMGITATVI--DPADMEGLEAALNNNNVSLFFTESPTNPF--LRC-VD--VK---LVSDLCHK--KGAIVCIDGTFA 336 (541)
Q Consensus 269 ~l~~~Gi~v~~v--d~~dle~Le~ai~~~~tklV~lesp~NPt--G~v-~d--i~---~Ia~la~~--~gillvvDea~a 336 (541)
..+..|+++-.. +...++.++..+.. +..|++.+.+ |. |.. .| ++ ++.++..+ .++.+.+|.--.
T Consensus 129 ~ir~~G~k~Gvalnp~Tp~e~l~~~l~~--vD~VlvMsV~-PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~ 205 (246)
T 3inp_A 129 LIKSFGIQAGLALNPATGIDCLKYVESN--IDRVLIMSVN-PGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN 205 (246)
T ss_dssp HHHTTTSEEEEEECTTCCSGGGTTTGGG--CSEEEEECSC-TTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC
T ss_pred HHHHcCCeEEEEecCCCCHHHHHHHHhc--CCEEEEeeec-CCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC
Confidence 346667654432 34456677666653 5677776543 43 321 12 44 44444444 358899997544
Q ss_pred CCCcccccccCCcEEE
Q 009172 337 TPLNQKALSLGADLVL 352 (541)
Q Consensus 337 ~~~~~~~l~~gaDivv 352 (541)
.--.....+.|+|+++
T Consensus 206 ~~ti~~~~~aGAD~~V 221 (246)
T 3inp_A 206 PYNIAEIAVCGVNAFV 221 (246)
T ss_dssp TTTHHHHHTTTCCEEE
T ss_pred HHHHHHHHHcCCCEEE
Confidence 3222344577999876
No 257
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=35.11 E-value=1.9e+02 Score=27.62 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=45.3
Q ss_pred cCCcEEEEeCCC--CHHHHHHhc----cCCCeeEEEEe----CCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCCCCC
Q 009172 272 KMGITATVIDPA--DMEGLEAAL----NNNNVSLFFTE----SPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPL 339 (541)
Q Consensus 272 ~~Gi~v~~vd~~--dle~Le~ai----~~~~tklV~le----sp~NPtG~v~di~~Ia~la~~~gillvvDea~a~~~ 339 (541)
..|..|.+-... +++++..++ ...+..+++++ +..|..-...++..+..+.+..+.+||+|.+++.+.
T Consensus 128 ~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~ 205 (262)
T 1zco_A 128 KVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKELSHLPIIVDPSHPAGR 205 (262)
T ss_dssp TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECSSTTTCS
T ss_pred hcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhhhCCCEEEEcCCCCCc
Confidence 356666655443 577766665 22234577776 333445566788888888877799999999987664
No 258
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=34.88 E-value=1.1e+02 Score=29.32 Aligned_cols=87 Identities=13% Similarity=0.019 Sum_probs=49.6
Q ss_pred hccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEE-eCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC-----HH
Q 009172 245 LVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATV-IDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD-----VK 316 (541)
Q Consensus 245 ll~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~-vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~d-----i~ 316 (541)
+...| |-|++++..+.....+. ..+++.|++... +.+ .+.+.++...... ...+++.+.+..||...+ .+
T Consensus 118 ~~~aGadgii~~d~~~e~~~~~~-~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~-~g~v~~~s~~G~tG~~~~~~~~~~~ 195 (268)
T 1qop_A 118 CEQVGVDSVLVADVPVEESAPFR-QAALRHNIAPIFICPPNADDDLLRQVASYG-RGYTYLLSRSGVTGAENRGALPLHH 195 (268)
T ss_dssp HHHHTCCEEEETTCCGGGCHHHH-HHHHHTTCEEECEECTTCCHHHHHHHHHHC-CSCEEEESSSSCCCSSSCC--CCHH
T ss_pred HHHcCCCEEEEcCCCHHHHHHHH-HHHHHcCCcEEEEECCCCCHHHHHHHHhhC-CCcEEEEecCCcCCCccCCCchHHH
Confidence 33344 66888877665444433 456777876433 333 4556666554432 235666666666776432 44
Q ss_pred HHHHHHHhCCCEEEEEc
Q 009172 317 LVSDLCHKKGAIVCIDG 333 (541)
Q Consensus 317 ~Ia~la~~~gillvvDe 333 (541)
.|.++.+..++++++|.
T Consensus 196 ~i~~lr~~~~~pi~vgg 212 (268)
T 1qop_A 196 LIEKLKEYHAAPALQGF 212 (268)
T ss_dssp HHHHHHHTTCCCEEEES
T ss_pred HHHHHHhccCCcEEEEC
Confidence 55555554578888864
No 259
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=34.25 E-value=46 Score=29.20 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=39.5
Q ss_pred CHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHH-HHHHhCCCE-EEEEcCCCCC
Q 009172 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVS-DLCHKKGAI-VCIDGTFATP 338 (541)
Q Consensus 284 dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia-~la~~~gil-lvvDea~a~~ 338 (541)
+.+.|.+.++++++..|+++.|-|..|..-+ .+.++ .++++.+++ ..+||.+.+.
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~ 103 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLTTM 103 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSCHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCCHH
Confidence 6788999998877999999999887776644 23444 344456764 5579987654
No 260
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=34.07 E-value=1.2e+02 Score=30.24 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=44.5
Q ss_pred hccCCCEEEEcCCCCcch---HHHH---HhhcccCCcEEEEeCCC----------C---HHHHHHhccCCCeeEEEEeCC
Q 009172 245 LVPAGGHIVTTTDCYRKT---RIFI---ETVLPKMGITATVIDPA----------D---MEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 245 ll~~GD~VIv~~~~y~~~---~~~~---~~~l~~~Gi~v~~vd~~----------d---le~Le~ai~~~~tklV~lesp 305 (541)
.+++||+|-+..|..+.. ...+ ...++.+|.+|++-+.. | .++|.+++.+..+++|+..--
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 378999998888876643 2222 23567789999876521 2 466777776546899987444
Q ss_pred CCCCCcccC
Q 009172 306 TNPFLRCVD 314 (541)
Q Consensus 306 ~NPtG~v~d 314 (541)
..-+-+++|
T Consensus 88 G~g~~rlL~ 96 (331)
T 4e5s_A 88 GYNSNGLLK 96 (331)
T ss_dssp CSCGGGGGG
T ss_pred cccHHHHHh
Confidence 433444444
No 261
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=33.02 E-value=1.4e+02 Score=28.34 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=36.8
Q ss_pred cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCC-CCCCcccCHHHHHHHHHhCC-CE
Q 009172 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPT-NPFLRCVDVKLVSDLCHKKG-AI 328 (541)
Q Consensus 272 ~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~-NPtG~v~di~~Ia~la~~~g-il 328 (541)
..++++...|..|.+.+.++++. ...|+..... ++...+.-...+.+.|++.| +.
T Consensus 54 ~~~~~~~~~D~~d~~~l~~~~~~--~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~ 110 (313)
T 1qyd_A 54 QLGAKLIEASLDDHQRLVDALKQ--VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIK 110 (313)
T ss_dssp TTTCEEECCCSSCHHHHHHHHTT--CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCS
T ss_pred hCCeEEEeCCCCCHHHHHHHHhC--CCEEEECCccccchhhHHHHHHHHHHHHhcCCCc
Confidence 45788877888899999999874 5566553332 11113444568888898887 53
No 262
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.89 E-value=2.6e+02 Score=24.84 Aligned_cols=123 Identities=11% Similarity=0.158 Sum_probs=61.1
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE--EEEeCCCCH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT--ATVIDPADM 285 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~--v~~vd~~dl 285 (541)
..+....+-..++.......++=+++|+......+...+.++.+|+..+..-.. ....+..++..|+. +.++.. |.
T Consensus 48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~-~~~a~~~~~~~~~~~~v~~~~~-d~ 125 (225)
T 3tr6_A 48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKS-TALAKEYWEKAGLSDKIGLRLS-PA 125 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHH-HHHHHHHHHHTTCTTTEEEEES-CH
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHH-HHHHHHHHHHCCCCCceEEEeC-CH
Confidence 345556666667677666777777777644444444444446777776654322 23333334444432 444432 33
Q ss_pred -HHHHHhccC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 286 -EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 286 -e~Le~ai~~---~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
+.+.....+ .+..+|++..+. .....-++.+.++.+. |..+++|++.
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~~L~p-gG~lv~~~~~ 176 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLKLLRE-GGLIAVDNVL 176 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHHHEEE-EEEEEEECSS
T ss_pred HHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHHhcCC-CcEEEEeCCC
Confidence 333332211 247888874431 0011113344444433 6677777774
No 263
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=32.43 E-value=1.3e+02 Score=29.93 Aligned_cols=70 Identities=16% Similarity=-0.010 Sum_probs=43.6
Q ss_pred hccCCCEEEEcCCCCcch------HHHHHhhcccCCcEEEEeCCC----------C---HHHHHHhccCCCeeEEEEeCC
Q 009172 245 LVPAGGHIVTTTDCYRKT------RIFIETVLPKMGITATVIDPA----------D---MEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 245 ll~~GD~VIv~~~~y~~~------~~~~~~~l~~~Gi~v~~vd~~----------d---le~Le~ai~~~~tklV~lesp 305 (541)
.+++||+|-+..|..+.. .......++.+|.+|+.-+.. | .++|.+++.+..+++|+..--
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 378999998888887542 112223567789998875421 1 456777776546899887444
Q ss_pred CCCCCcccC
Q 009172 306 TNPFLRCVD 314 (541)
Q Consensus 306 ~NPtG~v~d 314 (541)
..-+-+++|
T Consensus 89 G~g~~rlL~ 97 (336)
T 3sr3_A 89 GMNSNSLLP 97 (336)
T ss_dssp CSCGGGGGG
T ss_pred cccHHHHhh
Confidence 333444444
No 264
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=31.46 E-value=94 Score=29.80 Aligned_cols=82 Identities=10% Similarity=0.082 Sum_probs=47.3
Q ss_pred HHhccCCCEEEE-cCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHH
Q 009172 243 LALVPAGGHIVT-TTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDL 321 (541)
Q Consensus 243 ~all~~GD~VIv-~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~l 321 (541)
..|++.|.+|++ .+..- .....+.. +...|+++...|..|.+.+.++++. ...|+..... . .+.-...+.+.
T Consensus 29 ~~L~~~g~~V~~l~R~~~-~~~~~~~~-l~~~~v~~v~~Dl~d~~~l~~a~~~--~d~vi~~a~~--~-~~~~~~~l~~a 101 (318)
T 2r6j_A 29 KGSLKLGHPTYVFTRPNS-SKTTLLDE-FQSLGAIIVKGELDEHEKLVELMKK--VDVVISALAF--P-QILDQFKILEA 101 (318)
T ss_dssp HHHHHTTCCEEEEECTTC-SCHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTT--CSEEEECCCG--G-GSTTHHHHHHH
T ss_pred HHHHHCCCcEEEEECCCC-chhhHHHH-hhcCCCEEEEecCCCHHHHHHHHcC--CCEEEECCch--h-hhHHHHHHHHH
Confidence 445566765544 33221 11222211 2345788888899999999999974 5666653322 1 13345688888
Q ss_pred HHhCC-CEEEE
Q 009172 322 CHKKG-AIVCI 331 (541)
Q Consensus 322 a~~~g-illvv 331 (541)
|++.| +.-++
T Consensus 102 a~~~g~v~~~v 112 (318)
T 2r6j_A 102 IKVAGNIKRFL 112 (318)
T ss_dssp HHHHCCCCEEE
T ss_pred HHhcCCCCEEE
Confidence 88877 54333
No 265
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.26 E-value=1e+02 Score=29.70 Aligned_cols=89 Identities=11% Similarity=0.056 Sum_probs=49.6
Q ss_pred HHHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEE-eCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCccc----C
Q 009172 242 LLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATV-IDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCV----D 314 (541)
Q Consensus 242 l~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~-vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~----d 314 (541)
+..+.+.| |-|++++..+.....+. ..++..|++..+ +.+ .+.+.++...+.. ...||+.+..-.||... +
T Consensus 116 ~~~~~~aGvdgvii~Dlp~ee~~~~~-~~~~~~gl~~i~liaP~t~~eri~~i~~~~-~gfvY~vS~~GvTG~~~~~~~~ 193 (267)
T 3vnd_A 116 YTKAQAAGVDSVLIADVPVEESAPFS-KAAKAHGIAPIFIAPPNADADTLKMVSEQG-EGYTYLLSRAGVTGTESKAGEP 193 (267)
T ss_dssp HHHHHHHTCCEEEETTSCGGGCHHHH-HHHHHTTCEEECEECTTCCHHHHHHHHHHC-CSCEEESCCCCCC--------C
T ss_pred HHHHHHcCCCEEEeCCCCHhhHHHHH-HHHHHcCCeEEEEECCCCCHHHHHHHHHhC-CCcEEEEecCCCCCCccCCcHH
Confidence 33334444 77888877765544433 556778887653 333 3566776665432 34677766555577542 3
Q ss_pred HHHHHHHHHhC-CCEEEEE
Q 009172 315 VKLVSDLCHKK-GAIVCID 332 (541)
Q Consensus 315 i~~Ia~la~~~-gillvvD 332 (541)
+.++.+.++++ +++++++
T Consensus 194 ~~~~v~~vr~~~~~pv~vG 212 (267)
T 3vnd_A 194 IENILTQLAEFNAPPPLLG 212 (267)
T ss_dssp HHHHHHHHHTTTCCCEEEC
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 44555555553 6777774
No 266
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*
Probab=30.98 E-value=1.1e+02 Score=28.61 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCC
Q 009172 273 MGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGA 327 (541)
Q Consensus 273 ~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gi 327 (541)
.++++...|..|.+.++++++. ...|+.....++...+.-...+.+.|++.|+
T Consensus 44 ~~~~~~~~D~~d~~~~~~~~~~--~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~ 96 (286)
T 2zcu_A 44 QGITVRQADYGDEAALTSALQG--VEKLLLISSSEVGQRAPQHRNVINAAKAAGV 96 (286)
T ss_dssp TTCEEEECCTTCHHHHHHHTTT--CSEEEECC--------CHHHHHHHHHHHHTC
T ss_pred CCCeEEEcCCCCHHHHHHHHhC--CCEEEEeCCCCchHHHHHHHHHHHHHHHcCC
Confidence 3677777888899999999864 4566543332222222335577788877764
No 267
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=30.87 E-value=96 Score=30.09 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=42.5
Q ss_pred CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC----C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHH
Q 009172 248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP----A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320 (541)
Q Consensus 248 ~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~----~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~ 320 (541)
++..+++..+.|+- +++.+|++...+.. . ++.+|.+.++++++++||.|.-.|+- .+..
T Consensus 189 ~~~~~v~~H~af~Y-------f~~~yGl~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~-------~~~~ 254 (291)
T 1pq4_A 189 PQRKFIVFHPSWAY-------FARDYNLVQIPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFSTK-------SSEA 254 (291)
T ss_dssp SCCEEEESSCCCHH-------HHHHTTCEEEESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCH-------HHHH
T ss_pred CCCEEEEECCchHH-------HHHHCCCEEeecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChH-------HHHH
Confidence 46788887776642 34567777655431 1 35556666666678999986554432 2234
Q ss_pred HHHhCCCEEEE
Q 009172 321 LCHKKGAIVCI 331 (541)
Q Consensus 321 la~~~gillvv 331 (541)
++++.|+.++.
T Consensus 255 ia~~~g~~v~~ 265 (291)
T 1pq4_A 255 IAAEIGAGVEL 265 (291)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHcCCeEEE
Confidence 57777876653
No 268
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=30.80 E-value=31 Score=33.60 Aligned_cols=71 Identities=25% Similarity=0.316 Sum_probs=42.0
Q ss_pred CEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHH
Q 009172 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320 (541)
Q Consensus 250 D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~ 320 (541)
..+++..+.|+ .+++.+|++...+.. . ++.+|.+.++++++++||.|.-.|| --.+.|.+
T Consensus 164 ~~~vt~H~af~-------Y~~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~----~~~~~l~~ 232 (282)
T 3mfq_A 164 RYLVTPHDAFN-------YFAASYDFTLYAPQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTNP----ERMKKLQE 232 (282)
T ss_dssp CEEECSSSCCH-------HHHHHTTCEEECSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSCT----HHHHHHHH
T ss_pred cEEEEECchHH-------HHHHHCCCeEecccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh----HHHHHHHH
Confidence 44555445543 234567877654321 1 3455555666556899998654432 12567888
Q ss_pred HHHhCCCEEEE
Q 009172 321 LCHKKGAIVCI 331 (541)
Q Consensus 321 la~~~gillvv 331 (541)
+|++.|+.+++
T Consensus 233 ~a~~~g~~v~~ 243 (282)
T 3mfq_A 233 AVKAKGGQVEV 243 (282)
T ss_dssp HHHTTSCCCEE
T ss_pred HHHhcCCceEE
Confidence 89999876654
No 269
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=30.54 E-value=3.1e+02 Score=24.89 Aligned_cols=121 Identities=14% Similarity=0.206 Sum_probs=60.2
Q ss_pred CchhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCH
Q 009172 208 GNPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADM 285 (541)
Q Consensus 208 ~~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dl 285 (541)
..|....+-..++...+...++=+.+|+......+...+.++.+|+..+..-.. ....+..+...|+ .+.++..+-.
T Consensus 56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNA-TAIAKKYWQKAGVAEKISLRLGPAL 134 (232)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHH-HHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHH-HHHHHHHHHHcCCCCcEEEEEcCHH
Confidence 456666666667777777777777777644334444344446677766654322 2223233333333 2443332222
Q ss_pred HHHHHhccC---CCeeEEEEeCCCCCCCcccCHHHHHHHHHh---CCCEEEEEcCC
Q 009172 286 EGLEAALNN---NNVSLFFTESPTNPFLRCVDVKLVSDLCHK---KGAIVCIDGTF 335 (541)
Q Consensus 286 e~Le~ai~~---~~tklV~lesp~NPtG~v~di~~Ia~la~~---~gillvvDea~ 335 (541)
+.+.....+ ....+|++..+ ..+...+.+.+.+ .|..+++|++.
T Consensus 135 ~~l~~l~~~~~~~~fD~V~~d~~------~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 135 ATLEQLTQGKPLPEFDLIFIDAD------KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HHHHHHHTSSSCCCEEEEEECSC------GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HHHHHHHhcCCCCCcCEEEECCC------HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 323333221 24678887533 1233333333332 36677777764
No 270
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=30.46 E-value=3.2e+02 Score=25.09 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcE--EEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGIT--ATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~--v~~vd~~dle 286 (541)
.+....+-..++...+...++=+.+|+......+...+.++.+|+..+..-. .....+..+...|+. +.++. .|..
T Consensus 48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~-~~~~a~~~~~~~g~~~~v~~~~-~d~~ 125 (248)
T 3tfw_A 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAH-HAQVARENLQLAGVDQRVTLRE-GPAL 125 (248)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHH-HHHHHHHHHHHTTCTTTEEEEE-SCHH
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEE-cCHH
Confidence 4666666667777777777777777774444444444444667776665432 233333334444432 44433 3444
Q ss_pred HHHHhccC-CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 287 GLEAALNN-NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 287 ~Le~ai~~-~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
+....+.. .+..+|++..+. .....-++.+.++.+. |.++++|++.
T Consensus 126 ~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~Lkp-GG~lv~~~~~ 172 (248)
T 3tfw_A 126 QSLESLGECPAFDLIFIDADK--PNNPHYLRWALRYSRP-GTLIIGDNVV 172 (248)
T ss_dssp HHHHTCCSCCCCSEEEECSCG--GGHHHHHHHHHHTCCT-TCEEEEECCS
T ss_pred HHHHhcCCCCCeEEEEECCch--HHHHHHHHHHHHhcCC-CeEEEEeCCC
Confidence 43232322 236788874321 0111113344444433 5677778764
No 271
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=30.37 E-value=62 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=35.8
Q ss_pred CHHHHHHhccCCCeeEEEEeCCCCCCCcccC----HHHHHHHHHhCCCEE-EEEcCCC
Q 009172 284 DMEGLEAALNNNNVSLFFTESPTNPFLRCVD----VKLVSDLCHKKGAIV-CIDGTFA 336 (541)
Q Consensus 284 dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i~~Ia~la~~~gill-vvDea~a 336 (541)
+.+.|++.++++++..|++--|-|..|..-+ ..+.++..++.++++ .+||-+.
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~lpV~~~DERlT 96 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRARGVEVELWDERFT 96 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHTTCEEEEECCSCC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 4677788777656888999899988887765 334444433336654 5888654
No 272
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=30.18 E-value=26 Score=36.19 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=50.7
Q ss_pred cCCCEEEEcCCCCcchHHH---HHhhcccCCcEEEEeCCCCH----H-HHHHhccCCCeeEEEEeCCCCCCCcccCHHHH
Q 009172 247 PAGGHIVTTTDCYRKTRIF---IETVLPKMGITATVIDPADM----E-GLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318 (541)
Q Consensus 247 ~~GD~VIv~~~~y~~~~~~---~~~~l~~~Gi~v~~vd~~dl----e-~Le~ai~~~~tklV~lesp~NPtG~v~di~~I 318 (541)
.+|..||+.-.++. ...+ +...++.+|++.+.+.+... . .....-....+.= | .+++..|...+++++
T Consensus 7 ~~g~~~i~~~f~W~-w~~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~d-y--~i~~~~Gt~~df~~l 82 (496)
T 4gqr_A 7 QQGRTSIVHLFEWR-WVDIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVS-Y--KLCTRSGNEDEFRNM 82 (496)
T ss_dssp CTTCCEEEEETTCC-HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSC-S--CSCBTTBCHHHHHHH
T ss_pred CCCCcEEEEecCCC-HHHHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccC-c--eeCCCCCCHHHHHHH
Confidence 45667777665553 1122 22347788998888765310 0 0000000000111 2 345567999999999
Q ss_pred HHHHHhCCCEEEEEcCC
Q 009172 319 SDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 319 a~la~~~gillvvDea~ 335 (541)
++-||++|+.||+|-++
T Consensus 83 v~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 83 VTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHHTTCEEEEEECC
T ss_pred HHHHHHCCCEEEEEEcc
Confidence 99999999999999984
No 273
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=29.51 E-value=1.1e+02 Score=28.77 Aligned_cols=55 Identities=13% Similarity=0.138 Sum_probs=36.4
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCC-CCC-CcccCHHHHHHHHHhCCC
Q 009172 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT-NPF-LRCVDVKLVSDLCHKKGA 327 (541)
Q Consensus 271 ~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~-NPt-G~v~di~~Ia~la~~~gi 327 (541)
...++++...|..|.+.++++++. +..|+..... ++. ..+.....+.+.|++.|+
T Consensus 42 ~~~~v~~~~~D~~d~~~l~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 42 WRGKVSVRQLDYFNQESMVEAFKG--MDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp GBTTBEEEECCTTCHHHHHHHTTT--CSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTC
T ss_pred hhCCCEEEEcCCCCHHHHHHHHhC--CCEEEEeCCCCccchhhHHHHHHHHHHHHHcCC
Confidence 345888888899999999999874 5666653322 211 112335578888888875
No 274
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=29.42 E-value=1.9e+02 Score=23.80 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=43.4
Q ss_pred CcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCC
Q 009172 226 ESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 226 ~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp 305 (541)
...+++..|.-+..+ ...|.+.|-+|++.+..-. .+.. +...|+.+...|..+.+.++++--. +..+|++..+
T Consensus 7 ~~v~I~G~G~iG~~l-a~~L~~~g~~V~~id~~~~----~~~~-~~~~~~~~~~gd~~~~~~l~~~~~~-~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGL-VRELTAAGKKVLAVDKSKE----KIEL-LEDEGFDAVIADPTDESFYRSLDLE-GVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHH-HHHHHHTTCCEEEEESCHH----HHHH-HHHTTCEEEECCTTCHHHHHHSCCT-TCSEEEECCS
T ss_pred CEEEEECCCHHHHHH-HHHHHHCCCeEEEEECCHH----HHHH-HHHCCCcEEECCCCCHHHHHhCCcc-cCCEEEEecC
Confidence 467888877744332 2344556766665544321 1222 3335788877888888888876323 3678887555
No 275
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=28.94 E-value=2e+02 Score=26.70 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dle 286 (541)
.+....+-..++...+...++=+++|+......+...+.++.+|+..+..-... ...+..++..|+ .+.++.. |..
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~-~~a~~~~~~~g~~~~i~~~~g-da~ 122 (242)
T 3r3h_A 45 APEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWT-KHAHPYWREAKQEHKIKLRLG-PAL 122 (242)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSC-CCSHHHHHHTTCTTTEEEEES-CHH
T ss_pred CHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEc-CHH
Confidence 455666666677777777666555554333333334455566777665442221 111122222332 2443332 333
Q ss_pred H-HHHhcc---CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 287 G-LEAALN---NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 287 ~-Le~ai~---~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
+ +..... .....+|++..+. .....-++++.++.+. |.++++|++..
T Consensus 123 ~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~Lkp-GG~lv~d~~~~ 173 (242)
T 3r3h_A 123 DTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELALKLVTP-KGLIAIDNIFW 173 (242)
T ss_dssp HHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHHHHHEEE-EEEEEEECSSS
T ss_pred HHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHHHHhcCC-CeEEEEECCcc
Confidence 3 332221 1247899886541 1111113444444443 66777788743
No 276
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=28.49 E-value=37 Score=29.37 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=37.3
Q ss_pred CcEEEEeCCCC---HHHHHHhccCCCeeEEEEeCCC--CCCCcccCHHHHHHHHHhCCCEEEEE
Q 009172 274 GITATVIDPAD---MEGLEAALNNNNVSLFFTESPT--NPFLRCVDVKLVSDLCHKKGAIVCID 332 (541)
Q Consensus 274 Gi~v~~vd~~d---le~Le~ai~~~~tklV~lesp~--NPtG~v~di~~Ia~la~~~gillvvD 332 (541)
|+++..+.... -.++.+.|.++++.+|+. +|. ++-....|...|.+.|-.|+++++..
T Consensus 49 Gl~v~~v~k~~~eG~p~I~d~I~~geIdlVIn-t~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 111 (134)
T 2xw6_A 49 GLTVEKLLSGPLGGDQQMGARVAEGRILAVIF-FRDPLTAQPHEPDVQALLRVCDVHGVPLATN 111 (134)
T ss_dssp CCCCEECSCGGGTHHHHHHHHHHTTCEEEEEE-ECCTTTCCTTSCCSHHHHHHHHHHTCCEECS
T ss_pred CceEEEEEecCCCCcchHHHHHHCCCccEEEE-ccCcccCCCccchHHHHHHHHHHcCCCeEcC
Confidence 55555553211 135677777666877765 443 43333568899999999999998753
No 277
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=28.12 E-value=61 Score=27.66 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=47.2
Q ss_pred CCcchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC---CCEEEEEc
Q 009172 258 CYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK---GAIVCIDG 333 (541)
Q Consensus 258 ~y~~~~~~~~~~l~~~Gi~v~~vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~---gillvvDe 333 (541)
.|.--..++...++..|.++.+... ..++++.+++.+.+..+|.++.-. +.....++++.+..++. ++.+++=.
T Consensus 15 ~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~~d~v~lS~~~--~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 15 CHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKADAILVSSLY--GQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp CCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTCSEEEEEECS--STHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEecC--cCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 4444445566678889999987643 367777776654457888885544 22333466677766664 36666654
Q ss_pred C
Q 009172 334 T 334 (541)
Q Consensus 334 a 334 (541)
.
T Consensus 93 ~ 93 (137)
T 1ccw_A 93 N 93 (137)
T ss_dssp S
T ss_pred C
Confidence 3
No 278
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=27.50 E-value=1.1e+02 Score=30.19 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=42.5
Q ss_pred CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC---C------CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHH
Q 009172 249 GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---A------DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319 (541)
Q Consensus 249 GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---~------dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia 319 (541)
+..+++..+.|+ .+++.+|++...+.. . ++.+|.+.++++++++||.|.-.++ +.+.
T Consensus 190 ~~~~v~~H~af~-------Yfa~~yGl~~~~~~~i~~~~ePs~~~l~~l~~~ik~~~v~~If~e~~~~~-------k~~~ 255 (307)
T 3ujp_A 190 QRFLVSCEGAFS-------YLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQK 255 (307)
T ss_dssp GCEEEEEESTTH-------HHHHHTTCEEEEEESSCCSSCCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHH
T ss_pred CCEEEEECchHH-------HHHHHCCCcEEEeeccCCCCCCCHHHHHHHHHHHHhcCCcEEEEeCCCCh-------HHHH
Confidence 456776555553 235667887664421 1 3556666676667999999765544 4456
Q ss_pred HHHHhCCCEEE
Q 009172 320 DLCHKKGAIVC 330 (541)
Q Consensus 320 ~la~~~gillv 330 (541)
.++++.|+.+.
T Consensus 256 ~ia~e~g~~v~ 266 (307)
T 3ujp_A 256 QVAQATGARFG 266 (307)
T ss_dssp HTTTTTCCEEE
T ss_pred HHHHHhCCcee
Confidence 67788887753
No 279
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=26.87 E-value=2e+02 Score=26.30 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=31.6
Q ss_pred ccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh--CCCEEEEEcCCCCCCcccccccCCcEEEEC
Q 009172 292 LNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK--KGAIVCIDGTFATPLNQKALSLGADLVLHS 354 (541)
Q Consensus 292 i~~~~tklV~lesp~NPtG~v~di~~Ia~la~~--~gillvvDea~a~~~~~~~l~~gaDivv~S 354 (541)
++++ .-+|++ + ..|...++-++++.+++ .|+.+|.= +.....++..-+|+++..
T Consensus 104 ~~~~-DlvI~i-S---~SG~t~~~i~~~~~ak~~~~Ga~vI~I----T~~~~s~La~~aD~~l~~ 159 (220)
T 3etn_A 104 LQEN-DLLLLI-S---NSGKTREIVELTQLAHNLNPGLKFIVI----TGNPDSPLASESDVCLST 159 (220)
T ss_dssp CCTT-CEEEEE-C---SSSCCHHHHHHHHHHHHHCTTCEEEEE----ESCTTSHHHHHSSEEEEC
T ss_pred CCCC-CEEEEE-c---CCCCCHHHHHHHHHHHhcCCCCeEEEE----ECCCCChhHHhCCEEEEc
Confidence 4443 344444 3 35777788889999999 99766531 111223444447777653
No 280
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=26.43 E-value=63 Score=28.55 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=37.6
Q ss_pred CCcEEEEeCCCC---HHHHHHhccCCCeeEEEEeCCC--CCCCcccCHHHHHHHHHhCCCEEEEE
Q 009172 273 MGITATVIDPAD---MEGLEAALNNNNVSLFFTESPT--NPFLRCVDVKLVSDLCHKKGAIVCID 332 (541)
Q Consensus 273 ~Gi~v~~vd~~d---le~Le~ai~~~~tklV~lesp~--NPtG~v~di~~Ia~la~~~gillvvD 332 (541)
.|+++..+.... -.++.+.|.++++.+|+. +|. ++.....|...|.+.|-.|+++++.-
T Consensus 56 ~Gl~v~~v~k~~eGG~p~I~d~I~~geIdlVIn-t~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 119 (152)
T 1b93_A 56 TGMNVNAMLSGPMGGDQQVGALISEGKIDVLIF-FWDPLNAVPHDPDVKALLRLATVWNIPVATN 119 (152)
T ss_dssp HCCCCEEECCGGGTHHHHHHHHHHTTCCCEEEE-ECCTTSCCTTHHHHHHHHHHHHHTTCCEESS
T ss_pred hCceeEEEEecCCCCCchHHHHHHCCCccEEEE-cCCcccCCcccccHHHHHHHHHHcCCCEEeC
Confidence 356555554211 135677777666777765 443 32222457889999999999998753
No 281
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=26.06 E-value=2.1e+02 Score=25.54 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=32.7
Q ss_pred HHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEE
Q 009172 241 MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFT 302 (541)
Q Consensus 241 al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~l 302 (541)
++..|++.|.+|++....-... ..+ ..++++...|..|.+.++++++. ..+|+.
T Consensus 20 l~~~L~~~g~~V~~~~r~~~~~-----~~~-~~~~~~~~~Dl~d~~~~~~~~~~--~d~vi~ 73 (227)
T 3dhn_A 20 LLNEALNRGFEVTAVVRHPEKI-----KIE-NEHLKVKKADVSSLDEVCEVCKG--ADAVIS 73 (227)
T ss_dssp HHHHHHTTTCEEEEECSCGGGC-----CCC-CTTEEEECCCTTCHHHHHHHHTT--CSEEEE
T ss_pred HHHHHHHCCCEEEEEEcCcccc-----hhc-cCceEEEEecCCCHHHHHHHhcC--CCEEEE
Confidence 3455667788877654332110 011 13566666777899999999874 566665
No 282
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D
Probab=25.66 E-value=2.9e+02 Score=25.57 Aligned_cols=92 Identities=16% Similarity=0.144 Sum_probs=48.5
Q ss_pred EEeCCHHHHH-HHHHHHhccC--CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCC
Q 009172 229 VIMASGMSAS-TVMLLALVPA--GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 229 i~~sSG~~Ai-~~al~all~~--GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp 305 (541)
+++++|+.-+ ..++..|++. |.+|++....-..... +...++++...|..|.+.++++++. ...|+....
T Consensus 3 ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-----l~~~~~~~~~~D~~d~~~l~~~~~~--~d~vi~~a~ 75 (287)
T 2jl1_A 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST-----LADQGVEVRHGDYNQPESLQKAFAG--VSKLLFISG 75 (287)
T ss_dssp EEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH-----HHHTTCEEEECCTTCHHHHHHHTTT--CSEEEECCC
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH-----HhhcCCeEEEeccCCHHHHHHHHhc--CCEEEEcCC
Confidence 4444444222 2234455665 7666543322111111 1224677777888899999999874 556655333
Q ss_pred CCCCC--cccCHHHHHHHHHhCCC
Q 009172 306 TNPFL--RCVDVKLVSDLCHKKGA 327 (541)
Q Consensus 306 ~NPtG--~v~di~~Ia~la~~~gi 327 (541)
.++.. .+.-...+.+.|++.|+
T Consensus 76 ~~~~~~~n~~~~~~l~~a~~~~~~ 99 (287)
T 2jl1_A 76 PHYDNTLLIVQHANVVKAARDAGV 99 (287)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCchHHHHHHHHHHHHHHHcCC
Confidence 22211 11223467777877775
No 283
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=25.62 E-value=3.1e+02 Score=28.37 Aligned_cols=125 Identities=18% Similarity=0.253 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHHhCC----------CcEEEeC----CHHHH-HHHHHHHhccCCCEE-EEcCCCCc-chHHHHHhhcccC
Q 009172 211 TTVVVEEKMSALEGA----------ESTVIMA----SGMSA-STVMLLALVPAGGHI-VTTTDCYR-KTRIFIETVLPKM 273 (541)
Q Consensus 211 ~~~~Le~~LA~l~g~----------~~~i~~s----SG~~A-i~~al~all~~GD~V-Iv~~~~y~-~~~~~~~~~l~~~ 273 (541)
....+.+.|.++++. ...+++. +|-.. +..+...+.+.|.+| ++..+.|. +....+.......
T Consensus 75 v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~ 154 (443)
T 3dm5_A 75 IIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRY 154 (443)
T ss_dssp HHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhc
Confidence 345677777777663 1233332 23222 222223444556554 44545553 3344444455667
Q ss_pred CcEEEEeCC-CCHHH-----HHHhccCCCeeEEEEeCCCCCCC---cccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 274 GITATVIDP-ADMEG-----LEAALNNNNVSLFFTESPTNPFL---RCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 274 Gi~v~~vd~-~dle~-----Le~ai~~~~tklV~lesp~NPtG---~v~di~~Ia~la~~~gillvvDea~a 336 (541)
|+++...+. .|+.+ ++.+-.. ...+|++++|.--.- ....+..+.+..+.+.+++|+|.+.+
T Consensus 155 gvpv~~~~~~~dp~~i~~~al~~a~~~-~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 155 HIEVFGNPQEKDAIKLAKEGVDYFKSK-GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp TCEEECCTTCCCHHHHHHHHHHHHHHT-TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred CCcEEecCCCCCHHHHHHHHHHHHHhC-CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 887654332 34433 3333333 368999998852111 11123344444445679999998753
No 284
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=25.57 E-value=2.6e+02 Score=22.46 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=47.3
Q ss_pred cEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCC
Q 009172 227 STVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPT 306 (541)
Q Consensus 227 ~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~ 306 (541)
..+++..|.-+..++ ..|.+.|.+|++.+..- .....+....|+.+...+..+.+.+.++.-. +..+|+++.|.
T Consensus 6 ~i~IiG~G~iG~~~a-~~L~~~g~~v~~~d~~~----~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~-~~d~vi~~~~~ 79 (140)
T 1lss_A 6 YIIIAGIGRVGYTLA-KSLSEKGHDIVLIDIDK----DICKKASAEIDALVINGDCTKIKTLEDAGIE-DADMYIAVTGK 79 (140)
T ss_dssp EEEEECCSHHHHHHH-HHHHHTTCEEEEEESCH----HHHHHHHHHCSSEEEESCTTSHHHHHHTTTT-TCSEEEECCSC
T ss_pred EEEEECCCHHHHHHH-HHHHhCCCeEEEEECCH----HHHHHHHHhcCcEEEEcCCCCHHHHHHcCcc-cCCEEEEeeCC
Confidence 466777776544332 34455676676654321 1222233334776655666677777655222 36788887654
Q ss_pred CCCCcccCHHHHHHHHHhCC
Q 009172 307 NPFLRCVDVKLVSDLCHKKG 326 (541)
Q Consensus 307 NPtG~v~di~~Ia~la~~~g 326 (541)
. ..-..+.+++++.+
T Consensus 80 ~-----~~~~~~~~~~~~~~ 94 (140)
T 1lss_A 80 E-----EVNLMSSLLAKSYG 94 (140)
T ss_dssp H-----HHHHHHHHHHHHTT
T ss_pred c-----hHHHHHHHHHHHcC
Confidence 2 11124555666554
No 285
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=25.45 E-value=3.6e+02 Score=23.93 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=61.5
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dle 286 (541)
.|....+-..++.......++=+.+|+......+...+.++.+|+..+..-. .....+..+...|+ .+.++..+-.+
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~ 121 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEK-HADIARSNIERANLNDRVEVRTGLALD 121 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHH-HHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 4666667677777777777777777764444444444554677777665432 22333333443443 24443322222
Q ss_pred HHHHhccC--CCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 287 GLEAALNN--NNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 287 ~Le~ai~~--~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
.+...... .+..+|++..+. .....-++.+.++.+. |.++++|++..
T Consensus 122 ~~~~~~~~~~~~fD~v~~d~~~--~~~~~~l~~~~~~L~p-gG~lv~~~~~~ 170 (223)
T 3duw_A 122 SLQQIENEKYEPFDFIFIDADK--QNNPAYFEWALKLSRP-GTVIIGDNVVR 170 (223)
T ss_dssp HHHHHHHTTCCCCSEEEECSCG--GGHHHHHHHHHHTCCT-TCEEEEESCSG
T ss_pred HHHHHHhcCCCCcCEEEEcCCc--HHHHHHHHHHHHhcCC-CcEEEEeCCCc
Confidence 22222211 136788874331 0001113333333333 56888888743
No 286
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=25.39 E-value=4e+02 Score=26.18 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=53.2
Q ss_pred CcEEEeCCHHHHHHHHHHHhccCCC--EEEEc--CCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEE
Q 009172 226 ESTVIMASGMSASTVMLLALVPAGG--HIVTT--TDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFF 301 (541)
Q Consensus 226 ~~~i~~sSG~~Ai~~al~all~~GD--~VIv~--~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~ 301 (541)
.+.|++-+.+..+...|....+.|. +|++. +|.+.|. .+ ...+...|++++.+...-. ...+. ++..|+
T Consensus 122 g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~-~l-a~~L~~~gI~vtli~Dsa~---~~~m~--~vd~Vi 194 (315)
T 3ecs_A 122 GATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGK-KM-AKALCHLNVPVTVVLDAAV---GYIME--KADLVI 194 (315)
T ss_dssp TEEEEECSCCHHHHHHHHHHHTTTCCEEEEEECCTTTTHHH-HH-HHHHHTTTCCEEEECGGGH---HHHGG--GCSEEE
T ss_pred CCEEEEcCCcHHHHHHHHHHHHcCCeEEEEEecCCCcchHH-HH-HHHHHHcCCCEEEEehhHH---HHHHH--hCCEEE
Confidence 3566665444334444444444453 55554 3444453 33 3446677999988753222 23333 255565
Q ss_pred EeCCC-CCCCcccC---HHHHHHHHHhCCCEEEEE
Q 009172 302 TESPT-NPFLRCVD---VKLVSDLCHKKGAIVCID 332 (541)
Q Consensus 302 lesp~-NPtG~v~d---i~~Ia~la~~~gillvvD 332 (541)
+-.=. -..|.+.. --.++-+|+.+|++++|=
T Consensus 195 vGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~ 229 (315)
T 3ecs_A 195 VGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVV 229 (315)
T ss_dssp EECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEE
T ss_pred ECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEE
Confidence 52211 22344433 246788899999988873
No 287
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=25.08 E-value=80 Score=29.78 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=61.3
Q ss_pred CCchhHHHHHHHHHHHh---C---CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEe
Q 009172 207 YGNPTTVVVEEKMSALE---G---AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVI 280 (541)
Q Consensus 207 ~~~p~~~~Le~~LA~l~---g---~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v 280 (541)
.-||....|...|-.-+ + ++.++-...|+......+.-.+.+..+|+.-+..-.....+.+...+..++.....
T Consensus 54 ~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~ 133 (233)
T 4df3_A 54 EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILG 133 (233)
T ss_dssp ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEES
T ss_pred eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEE
Confidence 34676666654443211 1 23455566666444444555667777888777665443333322223345666655
Q ss_pred CCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcC
Q 009172 281 DPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGT 334 (541)
Q Consensus 281 d~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea 334 (541)
+..+++...... . ...+||...+. |.-...-+.++.++.+.-|.++|++..
T Consensus 134 d~~~p~~~~~~~-~-~vDvVf~d~~~-~~~~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 134 DARFPEKYRHLV-E-GVDGLYADVAQ-PEQAAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp CTTCGGGGTTTC-C-CEEEEEECCCC-TTHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eccCcccccccc-c-eEEEEEEeccC-ChhHHHHHHHHHHhccCCCEEEEEEec
Confidence 655555433222 2 36677764333 310001133333444445666666543
No 288
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=24.93 E-value=1.4e+02 Score=28.81 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=40.6
Q ss_pred EEEeCCHHHHHH-HHHHHhccCCCEEEEcCCCCcchHHHHHhhcc--cCCcEEEEeCCCCHHHHHHhccCCCeeEEEE
Q 009172 228 TVIMASGMSAST-VMLLALVPAGGHIVTTTDCYRKTRIFIETVLP--KMGITATVIDPADMEGLEAALNNNNVSLFFT 302 (541)
Q Consensus 228 ~i~~sSG~~Ai~-~al~all~~GD~VIv~~~~y~~~~~~~~~~l~--~~Gi~v~~vd~~dle~Le~ai~~~~tklV~l 302 (541)
.+++++|+..+- .+...|++.|.+|++....-............ ..++.+...|..|.+.++++++..+...|+-
T Consensus 7 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 84 (341)
T 3enk_A 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIH 84 (341)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEE
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEE
Confidence 455555443332 23345667788887765433222222222211 2356666667789999999887433556554
No 289
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=24.92 E-value=1.5e+02 Score=28.54 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=56.3
Q ss_pred EEEEcCCCCcchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEE
Q 009172 251 HIVTTTDCYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIV 329 (541)
Q Consensus 251 ~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gill 329 (541)
+|++....|.+....+..+.+..++.+..-|. .|+.++.++..-. ..+|.+-... ..-..++++.+.|++.|..+
T Consensus 97 sVltd~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~G-AD~VlLi~a~---L~~~~l~~l~~~a~~lGl~~ 172 (272)
T 3tsm_A 97 SVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWG-ADCILIIMAS---VDDDLAKELEDTAFALGMDA 172 (272)
T ss_dssp EEECCSTTTCCCHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTT-CSEEEEETTT---SCHHHHHHHHHHHHHTTCEE
T ss_pred EEeccccccCCCHHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcC-CCEEEEcccc---cCHHHHHHHHHHHHHcCCeE
Confidence 45655555666666665555555666654453 4666777666543 5666663321 22234778888999999988
Q ss_pred EEEcCCCCCCcccccccCCcEE
Q 009172 330 CIDGTFATPLNQKALSLGADLV 351 (541)
Q Consensus 330 vvDea~a~~~~~~~l~~gaDiv 351 (541)
++|-.-..- ....+..|+|++
T Consensus 173 lvevh~~eE-l~~A~~~ga~iI 193 (272)
T 3tsm_A 173 LIEVHDEAE-MERALKLSSRLL 193 (272)
T ss_dssp EEEECSHHH-HHHHTTSCCSEE
T ss_pred EEEeCCHHH-HHHHHhcCCCEE
Confidence 887531111 123345666654
No 290
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}
Probab=24.91 E-value=2e+02 Score=26.19 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=47.2
Q ss_pred EEEeCCHHHHH-HHHHHHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCC
Q 009172 228 TVIMASGMSAS-TVMLLALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESP 305 (541)
Q Consensus 228 ~i~~sSG~~Ai-~~al~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp 305 (541)
.+++++|+..+ ..++..|++.| .+|++....-.. . ..+...++++...|..|.++++++++. ...|+.+..
T Consensus 25 ~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~----~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~D~vv~~a~ 97 (236)
T 3qvo_A 25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAK----I-HKPYPTNSQIIMGDVLNHAALKQAMQG--QDIVYANLT 97 (236)
T ss_dssp EEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGG----S-CSSCCTTEEEEECCTTCHHHHHHHHTT--CSEEEEECC
T ss_pred EEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhh----h-cccccCCcEEEEecCCCHHHHHHHhcC--CCEEEEcCC
Confidence 44444444333 23345677788 466553321111 0 112223677777788899999999874 566664332
Q ss_pred CCCCCcccCHHHHHHHHHhCC
Q 009172 306 TNPFLRCVDVKLVSDLCHKKG 326 (541)
Q Consensus 306 ~NPtG~v~di~~Ia~la~~~g 326 (541)
. .......+.+.+.+++.+
T Consensus 98 ~--~~~~~~~~~~~~~~~~~~ 116 (236)
T 3qvo_A 98 G--EDLDIQANSVIAAMKACD 116 (236)
T ss_dssp S--TTHHHHHHHHHHHHHHTT
T ss_pred C--CchhHHHHHHHHHHHHcC
Confidence 1 112223446666666654
No 291
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=24.64 E-value=4e+02 Score=24.25 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dle 286 (541)
.|....+-..++...+...++=+.+|+......+...+.++.+|+..+..- ......+..++..|+ .+.++..+-.+
T Consensus 55 ~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~g~~~~i~~~~gda~~ 133 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDR-EAYEIGLPFIRKAGVEHKINFIESDAML 133 (237)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCH-HHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCH-HHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 455556666666777777777676666333333333345567777766542 223333334444454 24444332223
Q ss_pred HHHHhcc----CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 287 GLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 287 ~Le~ai~----~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
.+..... ..+..+|++.... .....-++.+.++.+ .|.++++|++.
T Consensus 134 ~l~~l~~~~~~~~~fD~I~~d~~~--~~~~~~l~~~~~~L~-pGG~lv~d~~~ 183 (237)
T 3c3y_A 134 ALDNLLQGQESEGSYDFGFVDADK--PNYIKYHERLMKLVK-VGGIVAYDNTL 183 (237)
T ss_dssp HHHHHHHSTTCTTCEEEEEECSCG--GGHHHHHHHHHHHEE-EEEEEEEECTT
T ss_pred HHHHHHhccCCCCCcCEEEECCch--HHHHHHHHHHHHhcC-CCeEEEEecCC
Confidence 2333221 2247888885321 111111334444443 36677788874
No 292
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=24.39 E-value=2.5e+02 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=27.1
Q ss_pred CCCcccCHHHHHHHHHhCCCEEEEEcCCCCCCcccccccCCcEEEE
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLH 353 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillvvDea~a~~~~~~~l~~gaDivv~ 353 (541)
-.|...++-++++.|++.|+.+|.= +.....++..-+|+++.
T Consensus 98 ~SG~t~~~i~~~~~ak~~g~~vI~I----T~~~~s~La~~ad~~l~ 139 (200)
T 1vim_A 98 GSGETTSVVNISKKAKDIGSKLVAV----TGKRDSSLAKMADVVMV 139 (200)
T ss_dssp SSSCCHHHHHHHHHHHHHTCEEEEE----ESCTTSHHHHHCSEEEE
T ss_pred CCCCcHHHHHHHHHHHHCCCeEEEE----ECCCCChHHHhCCEEEE
Confidence 4577778888999999998766531 11122344445787764
No 293
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=24.39 E-value=4.2e+02 Score=24.41 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=61.7
Q ss_pred chhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCc--EEEEeCCCCHH
Q 009172 209 NPTTVVVEEKMSALEGAESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGI--TATVIDPADME 286 (541)
Q Consensus 209 ~p~~~~Le~~LA~l~g~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi--~v~~vd~~dle 286 (541)
.|....+-..+....+...++=+.+|+......+...+.++.+|+..+..-. .....+..++..|+ .+.++..+-.+
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~g~~~~i~~~~gda~~ 142 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKE-NYELGLPVIKKAGVDHKIDFREGPALP 142 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCH-HHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHH-HHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence 4556666666677777777777777764433444334455667777665432 23333333444444 34444332222
Q ss_pred HHHHhcc----CCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 287 GLEAALN----NNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 287 ~Le~ai~----~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
.+..... .....+|++.... .....-++.+.++.+. |.++++|++.
T Consensus 143 ~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~Lkp-GG~lv~d~~~ 192 (247)
T 1sui_A 143 VLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRLIDLVKV-GGVIGYDNTL 192 (247)
T ss_dssp HHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHHHHHBCT-TCCEEEECTT
T ss_pred HHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHHHHhCCC-CeEEEEecCC
Confidence 2333210 2236788885331 1111124445555544 5566778764
No 294
>1lu0_A CMTI-I, trypsin inhibitor I; serine protease inhibitor, metal coordination, hydrolase INH; 1.03A {Cucurbita maxima} SCOP: g.3.2.1 PDB: 2v1v_A 1cti_A 1ppe_I 2cti_A 2sta_I 3cti_A 2btc_I 2stb_I 2eti_A 2it7_A
Probab=24.10 E-value=17 Score=22.67 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=12.4
Q ss_pred cccccccccCCCCcccccCCCCC
Q 009172 7 SSQKILSFSSSCSSFECRSDPDF 29 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (541)
.|||++ .+|..|.|-
T Consensus 2 ~CPrIl--------m~CK~DsDC 16 (29)
T 1lu0_A 2 VCPRIL--------LECKKDSDC 16 (29)
T ss_dssp CCCSCC--------CBCSSGGGS
T ss_pred CCchhh--------hhccccccc
Confidence 389999 899998874
No 295
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=24.06 E-value=1.4e+02 Score=29.48 Aligned_cols=68 Identities=18% Similarity=0.265 Sum_probs=42.7
Q ss_pred CCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHH
Q 009172 249 GGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVS 319 (541)
Q Consensus 249 GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia 319 (541)
+..+++..+.|+ .+++.+|++...+.. . ++.+|.+.++++++++||.|.-.++ +.+.
T Consensus 204 ~r~~v~~H~af~-------Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~ 269 (321)
T 1xvl_A 204 QRFLVSCEGAFS-------YLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD-------KGQK 269 (321)
T ss_dssp GCEEEEEESTTH-------HHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS-------HHHH
T ss_pred CCEEEEECchHH-------HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh-------HHHH
Confidence 457887666553 235667887665421 1 3556666666667999998755543 3344
Q ss_pred HHHHhCCCEEE
Q 009172 320 DLCHKKGAIVC 330 (541)
Q Consensus 320 ~la~~~gillv 330 (541)
.++++.|+.++
T Consensus 270 ~iA~e~g~~v~ 280 (321)
T 1xvl_A 270 QVAQATGARFG 280 (321)
T ss_dssp HHHTTTCCEEE
T ss_pred HHHHhcCCcee
Confidence 56788888875
No 296
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase; HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis} SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A* 1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Probab=23.55 E-value=38 Score=35.07 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=39.9
Q ss_pred hcccCCcEEEEeCCCC--HHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 269 VLPKMGITATVIDPAD--MEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 269 ~l~~~Gi~v~~vd~~d--le~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
.++.+|++.+++.+.- ... ........+.- + .++...|...+++++++.||++|+.||+|-++.
T Consensus 23 yL~~LGv~~I~l~Pi~~~~~~-~~~~~gY~~~~-y--~idp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 88 (448)
T 1g94_A 23 YLGPKGYAAVQVSPPNEHITG-SQWWTRYQPVS-Y--ELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLIN 88 (448)
T ss_dssp THHHHTCCEEEECCCSCBBCS-SSGGGGGSBSC-S--CSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHcCCCEEEECCccccCCC-CCCcccccccc-c--ccCCCCCCHHHHHHHHHHHHHCCCEEEEEEeec
Confidence 4677788887775431 000 00000001111 1 344457888899999999999999999999853
No 297
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=23.52 E-value=1.6e+02 Score=28.38 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=46.6
Q ss_pred HhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEe-CC-CCHHHHHHhccCCCeeEEEEeCCCCCCCccc----CHH
Q 009172 244 ALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI-DP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCV----DVK 316 (541)
Q Consensus 244 all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v-d~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~----di~ 316 (541)
.+.+.| |-||+++..+..... +...++.+|++..++ .+ .+.+.+++..+.. ...||+.+-...||.-. ++.
T Consensus 120 ~~~~aGvdGvIipDlp~ee~~~-~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~-~gfiY~vs~~GvTG~~~~~~~~~~ 197 (271)
T 3nav_A 120 RCQKAGVDSVLIADVPTNESQP-FVAAAEKFGIQPIFIAPPTASDETLRAVAQLG-KGYTYLLSRAGVTGAETKANMPVH 197 (271)
T ss_dssp HHHHHTCCEEEETTSCGGGCHH-HHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC-CSCEEECCCC--------CCHHHH
T ss_pred HHHHCCCCEEEECCCCHHHHHH-HHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC-CCeEEEEeccCCCCcccCCchhHH
Confidence 333444 788888877765444 335677788876543 33 3556666655432 45677755555677543 244
Q ss_pred HHHHHHHhC-CCEEEE
Q 009172 317 LVSDLCHKK-GAIVCI 331 (541)
Q Consensus 317 ~Ia~la~~~-gillvv 331 (541)
++.+..+++ ++++++
T Consensus 198 ~~v~~vr~~~~~Pv~v 213 (271)
T 3nav_A 198 ALLERLQQFDAPPALL 213 (271)
T ss_dssp HHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHhcCCCEEE
Confidence 555555554 677777
No 298
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=23.43 E-value=70 Score=29.03 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHhccCCCeeEEEEeCCC--CCCCcccCHHHHHHHHHhCCCEEEE
Q 009172 287 GLEAALNNNNVSLFFTESPT--NPFLRCVDVKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 287 ~Le~ai~~~~tklV~lesp~--NPtG~v~di~~Ia~la~~~gillvv 331 (541)
++.+.|..+++.+|+. +|. ++.....|...|.+.|-.++++++.
T Consensus 89 qI~d~I~~geIdlVIn-t~dPl~~~~h~~D~~~IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 89 QIGAMIAEGKIDVLIF-FWDPLEPQAHDVDVKALIRIATVYNIPVAI 134 (178)
T ss_dssp HHHHHHHTTSCCEEEE-ECCSSSCCTTSCCHHHHHHHHHHTTCCEES
T ss_pred hHHHHHHCCCccEEEE-ccCccCCCcccccHHHHHHHHHHcCCCEEe
Confidence 5667777666777765 443 4333256899999999999999874
No 299
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=23.33 E-value=1.2e+02 Score=27.14 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=26.3
Q ss_pred CCCcccCHHHHHHHHHhCCCEEEE--EcCCCCCCcccccccCCcEEEEC
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHS 354 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillvv--Dea~a~~~~~~~l~~gaDivv~S 354 (541)
..|...++-++++.++++|+.+|. |. ...++..-+|+++..
T Consensus 101 ~sG~t~~~~~~~~~ak~~g~~vi~IT~~------~~s~l~~~ad~~l~~ 143 (201)
T 3fxa_A 101 KGGNTGELLNLIPACKTKGSTLIGVTEN------PDSVIAKEADIFFPV 143 (201)
T ss_dssp SSSCCHHHHTTHHHHHHHTCEEEEEESC------TTSHHHHHCSEEEEC
T ss_pred CCCCCHHHHHHHHHHHHcCCeEEEEECC------CCChhHHhCCEEEEc
Confidence 357777778888999999876653 32 223444446776643
No 300
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=23.06 E-value=2.6e+02 Score=24.12 Aligned_cols=40 Identities=15% Similarity=-0.002 Sum_probs=24.8
Q ss_pred CCcccCHHHHHHHHHhCCCEEE--EEcCCCCCCcccccccCCcEEEECC
Q 009172 309 FLRCVDVKLVSDLCHKKGAIVC--IDGTFATPLNQKALSLGADLVLHSA 355 (541)
Q Consensus 309 tG~v~di~~Ia~la~~~gillv--vDea~a~~~~~~~l~~gaDivv~S~ 355 (541)
.|...++-+.++.|+++|+.+| .|.. .. +...+|+++...
T Consensus 92 sG~t~~~~~~~~~ak~~g~~vi~IT~~~------~s-l~~~ad~~l~~~ 133 (180)
T 1jeo_A 92 SGRTESVLTVAKKAKNINNNIIAIVCEC------GN-VVEFADLTIPLE 133 (180)
T ss_dssp SSCCHHHHHHHHHHHTTCSCEEEEESSC------CG-GGGGCSEEEECC
T ss_pred CCCcHHHHHHHHHHHHCCCcEEEEeCCC------Ch-HHHhCCEEEEeC
Confidence 4666778888999999886544 3332 12 333467666443
No 301
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=22.99 E-value=1.3e+02 Score=28.32 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=35.4
Q ss_pred ccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CE
Q 009172 271 PKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AI 328 (541)
Q Consensus 271 ~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g-il 328 (541)
...|+++...|..|.+.+.++++. ...|+..... ..+.....+.+.|++.| +.
T Consensus 54 ~~~~v~~v~~D~~d~~~l~~~~~~--~d~vi~~a~~---~~~~~~~~l~~aa~~~g~v~ 107 (308)
T 1qyc_A 54 KASGANIVHGSIDDHASLVEAVKN--VDVVISTVGS---LQIESQVNIIKAIKEVGTVK 107 (308)
T ss_dssp HTTTCEEECCCTTCHHHHHHHHHT--CSEEEECCCG---GGSGGGHHHHHHHHHHCCCS
T ss_pred HhCCCEEEEeccCCHHHHHHHHcC--CCEEEECCcc---hhhhhHHHHHHHHHhcCCCc
Confidence 345888888888899999999874 5566653322 11233467888888876 53
No 302
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=22.83 E-value=1.2e+02 Score=28.57 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=35.5
Q ss_pred cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CE
Q 009172 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AI 328 (541)
Q Consensus 272 ~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g-il 328 (541)
..|+++...|..|.+.+.++++. ...|+...... .+.....+.+.|++.| +.
T Consensus 54 ~~~v~~v~~D~~d~~~l~~~~~~--~d~vi~~a~~~---~~~~~~~l~~aa~~~g~v~ 106 (307)
T 2gas_A 54 SLGVILLEGDINDHETLVKAIKQ--VDIVICAAGRL---LIEDQVKIIKAIKEAGNVK 106 (307)
T ss_dssp HTTCEEEECCTTCHHHHHHHHTT--CSEEEECSSSS---CGGGHHHHHHHHHHHCCCS
T ss_pred hCCCEEEEeCCCCHHHHHHHHhC--CCEEEECCccc---ccccHHHHHHHHHhcCCce
Confidence 45788888898899999999874 56666533221 1334567788888776 53
No 303
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=22.75 E-value=3.5e+02 Score=25.92 Aligned_cols=107 Identities=15% Similarity=0.106 Sum_probs=55.7
Q ss_pred HHHHHHhCCCcEEEe-CCHHHHHHHHHHHhccCC--CEEEEc--CCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHh
Q 009172 217 EKMSALEGAESTVIM-ASGMSASTVMLLALVPAG--GHIVTT--TDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAA 291 (541)
Q Consensus 217 ~~LA~l~g~~~~i~~-sSG~~Ai~~al~all~~G--D~VIv~--~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~a 291 (541)
+.-+++....+.|++ .++..++. .+..+.+.| -+|++. +|.+.+ .... ..+...|++++.+...-.. ..
T Consensus 101 ~~a~~~I~~g~~IlT~~~s~Tv~~-~l~~a~~~~~~~~V~v~etrP~~qG-~~~a-~~L~~~gI~vtli~dsa~~---~~ 174 (276)
T 1vb5_A 101 SIGAQLIDDGDVIITHSFSSTVLE-IIRTAKERKKRFKVILTESSPDYEG-LHLA-RELEFSGIEFEVITDAQMG---LF 174 (276)
T ss_dssp HHHHHHCCTTEEEECCSCCHHHHH-HHHHHHHTTCCEEEEEECCTTTTHH-HHHH-HHHHHTTCCEEEECGGGHH---HH
T ss_pred HHHHHHccCCCEEEEeCCChHHHH-HHHHHHHcCCeEEEEEeCCCcchhh-HHHH-HHHHHCCCCEEEEcHHHHH---HH
Confidence 333444444456663 33334433 343333333 467773 455655 3333 3344579999887632222 23
Q ss_pred ccCCCeeEEEEeCCC-CCCCcccC---HHHHHHHHHhCCCEEEE
Q 009172 292 LNNNNVSLFFTESPT-NPFLRCVD---VKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 292 i~~~~tklV~lesp~-NPtG~v~d---i~~Ia~la~~~gillvv 331 (541)
+. ++..|++-.=. ...|.+.. -..++.+|++++++++|
T Consensus 175 m~--~vd~vivGAd~i~~nG~v~nkiGt~~iA~~A~~~~vp~~V 216 (276)
T 1vb5_A 175 CR--EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYV 216 (276)
T ss_dssp HT--TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEE
T ss_pred Hc--cCCEEEEcccEEecCCCEeechhHHHHHHHHHHcCCCEEE
Confidence 33 36666662211 23343332 34788889999988777
No 304
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=22.65 E-value=3.9e+02 Score=26.10 Aligned_cols=168 Identities=13% Similarity=0.065 Sum_probs=84.9
Q ss_pred ccCCccccCccccCChHHHHHHHhcccCCCCCCCCCchhHHHHHHHHHHHhC---CCc--EEEe-CCHH-HHHHHHHHHh
Q 009172 173 ITTPVVNTSAYFFKKTAELIDFKEKRRASFEYGRYGNPTTVVVEEKMSALEG---AES--TVIM-ASGM-SASTVMLLAL 245 (541)
Q Consensus 173 ~~~pi~~sst~~~~~~~~~~~~~~~~~~~~~Y~R~~~p~~~~Le~~LA~l~g---~~~--~i~~-sSG~-~Ai~~al~al 245 (541)
+..||.++.-....+.+......+...-++...++.+ .+.+++.+.++-. ..- .++. .... +.+..++
T Consensus 25 ~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~--~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~--- 99 (326)
T 3bo9_A 25 IEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMK--PDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCI--- 99 (326)
T ss_dssp CSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCC--HHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHH---
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCC--HHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHH---
Confidence 5668887766655555443333222212333344433 3445554444432 221 1222 1222 2333322
Q ss_pred ccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCC--CCCcccCHHHHHHHH
Q 009172 246 VPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTESPTN--PFLRCVDVKLVSDLC 322 (541)
Q Consensus 246 l~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~N--PtG~v~di~~Ia~la 322 (541)
+.| |.|.+... .+ ..++ ..++..|+.+.. ...+++....+.+.. ...|+++.+.. .+|...+++.+.++.
T Consensus 100 -~~g~d~V~l~~g-~p--~~~~-~~l~~~g~~v~~-~v~s~~~a~~a~~~G-aD~i~v~g~~~GG~~G~~~~~~ll~~i~ 172 (326)
T 3bo9_A 100 -EEKVPVVTFGAG-NP--TKYI-RELKENGTKVIP-VVASDSLARMVERAG-ADAVIAEGMESGGHIGEVTTFVLVNKVS 172 (326)
T ss_dssp -HTTCSEEEEESS-CC--HHHH-HHHHHTTCEEEE-EESSHHHHHHHHHTT-CSCEEEECTTSSEECCSSCHHHHHHHHH
T ss_pred -HCCCCEEEECCC-Cc--HHHH-HHHHHcCCcEEE-EcCCHHHHHHHHHcC-CCEEEEECCCCCccCCCccHHHHHHHHH
Confidence 233 45554322 22 2333 334455776543 345677766666553 77888876541 224456778888888
Q ss_pred HhCCCEEEEEcCCCCCCc-ccccccCCcEEE
Q 009172 323 HKKGAIVCIDGTFATPLN-QKALSLGADLVL 352 (541)
Q Consensus 323 ~~~gillvvDea~a~~~~-~~~l~~gaDivv 352 (541)
+..+++++.+.=..++-. ...+..|+|.+.
T Consensus 173 ~~~~iPviaaGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 173 RSVNIPVIAAGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp HHCSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHcCCCEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 878999999875443221 233456777655
No 305
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.55 E-value=82 Score=30.01 Aligned_cols=83 Identities=14% Similarity=0.154 Sum_probs=51.0
Q ss_pred CCEEEEcCC---CCcchHHHHHhhcccCCcEEEEeCC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHh
Q 009172 249 GGHIVTTTD---CYRKTRIFIETVLPKMGITATVIDP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHK 324 (541)
Q Consensus 249 GD~VIv~~~---~y~~~~~~~~~~l~~~Gi~v~~vd~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~ 324 (541)
+.+|++..+ .|.--..++...++..|.++.++.. ..++++.+++.+.++.+|.+..-. +.....++++.+..++
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~--~~~~~~~~~~i~~l~~ 200 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEKPIMLTGTALM--TTTMYAFKEVNDMLLE 200 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHCCSEEEEECCC--TTTTTHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEEeec--cCCHHHHHHHHHHHHh
Confidence 345555432 3443445566678889999987643 356677666654457788885433 3334467788887777
Q ss_pred CC--CEEEEEc
Q 009172 325 KG--AIVCIDG 333 (541)
Q Consensus 325 ~g--illvvDe 333 (541)
.+ +.+++=.
T Consensus 201 ~~~~~~v~vGG 211 (258)
T 2i2x_B 201 NGIKIPFACGG 211 (258)
T ss_dssp TTCCCCEEEES
T ss_pred cCCCCcEEEEC
Confidence 54 6666644
No 306
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=22.49 E-value=3.3e+02 Score=23.84 Aligned_cols=37 Identities=8% Similarity=-0.022 Sum_probs=25.3
Q ss_pred HHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEE
Q 009172 289 EAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVC 330 (541)
Q Consensus 289 e~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillv 330 (541)
...++++ .-+|++ +..|...++-++++.|+++|+.+|
T Consensus 104 ~~~~~~~-DvvI~i----S~SG~t~~~i~~~~~ak~~g~~vI 140 (196)
T 2yva_A 104 RALGHAG-DVLLAI----STRGNSRDIVKAVEAAVTRDMTIV 140 (196)
T ss_dssp HHHCCTT-CEEEEE----CSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred HhcCCCC-CEEEEE----eCCCCCHHHHHHHHHHHHCCCEEE
Confidence 3445553 345554 345777888899999999998665
No 307
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=22.36 E-value=1.7e+02 Score=26.16 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=43.4
Q ss_pred HHHHhccCCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCCCC-HHHHHHhccCCCeeEEEEeCCCCC-CCcccC---H
Q 009172 241 MLLALVPAGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDPAD-MEGLEAALNNNNVSLFFTESPTNP-FLRCVD---V 315 (541)
Q Consensus 241 al~all~~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~~d-le~Le~ai~~~~tklV~lesp~NP-tG~v~d---i 315 (541)
++..|++.|.+|++..-.-.. .....++++...|..| .+.++++++. ..+|+....... ...-.+ .
T Consensus 16 l~~~L~~~g~~V~~~~R~~~~-------~~~~~~~~~~~~D~~d~~~~~~~~~~~--~d~vi~~ag~~~~~~~~~n~~~~ 86 (219)
T 3dqp_A 16 LLKSLSTTDYQIYAGARKVEQ-------VPQYNNVKAVHFDVDWTPEEMAKQLHG--MDAIINVSGSGGKSLLKVDLYGA 86 (219)
T ss_dssp HHHHHTTSSCEEEEEESSGGG-------SCCCTTEEEEECCTTSCHHHHHTTTTT--CSEEEECCCCTTSSCCCCCCHHH
T ss_pred HHHHHHHCCCEEEEEECCccc-------hhhcCCceEEEecccCCHHHHHHHHcC--CCEEEECCcCCCCCcEeEeHHHH
Confidence 345667788877765432211 1111467777788889 9999999874 566665333221 111111 3
Q ss_pred HHHHHHHHhCC
Q 009172 316 KLVSDLCHKKG 326 (541)
Q Consensus 316 ~~Ia~la~~~g 326 (541)
..+.+.|++.+
T Consensus 87 ~~l~~a~~~~~ 97 (219)
T 3dqp_A 87 VKLMQAAEKAE 97 (219)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 45666666554
No 308
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=22.17 E-value=1.6e+02 Score=28.06 Aligned_cols=55 Identities=15% Similarity=0.155 Sum_probs=37.2
Q ss_pred cCCcEEEEeCCCCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCC-CEEEE
Q 009172 272 KMGITATVIDPADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKG-AIVCI 331 (541)
Q Consensus 272 ~~Gi~v~~vd~~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~g-illvv 331 (541)
..++++...|..|.+.+.++++. ...|+..... . .+.-...+.+.|++.| +.-++
T Consensus 55 ~~~v~~v~~D~~d~~~l~~a~~~--~d~vi~~a~~--~-~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 55 SMGVTIIEGEMEEHEKMVSVLKQ--VDIVISALPF--P-MISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp HTTCEEEECCTTCHHHHHHHHTT--CSEEEECCCG--G-GSGGGHHHHHHHHHHCCCCEEE
T ss_pred cCCcEEEEecCCCHHHHHHHHcC--CCEEEECCCc--c-chhhHHHHHHHHHHhCCccEEe
Confidence 45788888899999999999974 5666653321 1 1334567888888887 64333
No 309
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=21.97 E-value=1.9e+02 Score=26.92 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=46.3
Q ss_pred hcccCCcEEEE--eCCCCHHHHHHhccCCCeeEEEEeCCCCC--CCccc---CHHHHHHHHHhC-CCEEEEEcCCCCCCc
Q 009172 269 VLPKMGITATV--IDPADMEGLEAALNNNNVSLFFTESPTNP--FLRCV---DVKLVSDLCHKK-GAIVCIDGTFATPLN 340 (541)
Q Consensus 269 ~l~~~Gi~v~~--vd~~dle~Le~ai~~~~tklV~lesp~NP--tG~v~---di~~Ia~la~~~-gillvvDea~a~~~~ 340 (541)
..+..|+++-. -+..+.+.++..+.. ...|++.+. || .|... .+++|.++.+.. +..+.+|.--..--.
T Consensus 107 ~i~~~G~k~gval~p~t~~e~l~~~l~~--~D~Vl~msv-~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~~~t~ 183 (228)
T 3ovp_A 107 DIRENGMKVGLAIKPGTSVEYLAPWANQ--IDMALVMTV-EPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVGPDTV 183 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGTGGGGGG--CSEEEEESS-CTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCSTTTH
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHhcc--CCeEEEeee-cCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcCHHHH
Confidence 34555665433 234466777766643 567777665 34 34332 366777776554 588889975432222
Q ss_pred ccccccCCcEEE
Q 009172 341 QKALSLGADLVL 352 (541)
Q Consensus 341 ~~~l~~gaDivv 352 (541)
....+.|+|+++
T Consensus 184 ~~~~~aGAd~~V 195 (228)
T 3ovp_A 184 HKCAEAGANMIV 195 (228)
T ss_dssp HHHHHHTCCEEE
T ss_pred HHHHHcCCCEEE
Confidence 234567899776
No 310
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=21.92 E-value=3.5e+02 Score=26.89 Aligned_cols=80 Identities=14% Similarity=0.113 Sum_probs=44.4
Q ss_pred CCCEEEEcCCCCcchHHHHHhhcccCCcE---EEEeCCCCHHHH-HH----h--ccCCCeeEEEEeCCCCCCC------c
Q 009172 248 AGGHIVTTTDCYRKTRIFIETVLPKMGIT---ATVIDPADMEGL-EA----A--LNNNNVSLFFTESPTNPFL------R 311 (541)
Q Consensus 248 ~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~---v~~vd~~dle~L-e~----a--i~~~~tklV~lesp~NPtG------~ 311 (541)
+|..++.-+.++.-... .++++|+. +....+.+.+++ .. + +...++++|++.+.+...- .
T Consensus 57 ~g~~vlyId~E~s~~~~----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~ 132 (333)
T 3io5_A 57 PDAVCLFYDSEFGITPA----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDA 132 (333)
T ss_dssp TTCEEEEEESSCCCCHH----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC------
T ss_pred CCceEEEEeccchhhHH----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCc
Confidence 36777766666543322 23344442 333445565554 22 2 4544689999999885431 1
Q ss_pred --------ccC-------HHHHHHHHHhCCCEEEE
Q 009172 312 --------CVD-------VKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 312 --------v~d-------i~~Ia~la~~~gillvv 331 (541)
+.- +.+|..+++++|+.+|+
T Consensus 133 ~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~ 167 (333)
T 3io5_A 133 LNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIA 167 (333)
T ss_dssp --------CTHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 111 33456678899987665
No 311
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=21.84 E-value=1.6e+02 Score=31.47 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=66.9
Q ss_pred HHhccCCCEEEEcCCCCcchHHHHH---hhcccC-CcEEEEeCCCCHHHHHHhccCCCeeEEEEe-CCC------CCCCc
Q 009172 243 LALVPAGGHIVTTTDCYRKTRIFIE---TVLPKM-GITATVIDPADMEGLEAALNNNNVSLFFTE-SPT------NPFLR 311 (541)
Q Consensus 243 ~all~~GD~VIv~~~~y~~~~~~~~---~~l~~~-Gi~v~~vd~~dle~Le~ai~~~~tklV~le-sp~------NPtG~ 311 (541)
.+|++.|-.+|+-+..|+-....++ .+-+.+ .+.+.--+..+.+..+.+++.. ...|-+- .|. -.+|.
T Consensus 287 ~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aG-AD~vkVGiGpGSiCtTr~v~Gv 365 (556)
T 4af0_A 287 KLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAG-ADGLRIGMGSGSICITQEVMAV 365 (556)
T ss_dssp HHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT-CSEEEECSSCSTTBCCTTTCCS
T ss_pred HHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcC-CCEEeecCCCCcccccccccCC
Confidence 4566778556666667665433332 222222 4555544556777777777653 4555441 122 12343
Q ss_pred ccC----HHHHHHHHHhCCCEEEEEcCCCC-CCcccccccCCcEEEECCccccCCC
Q 009172 312 CVD----VKLVSDLCHKKGAIVCIDGTFAT-PLNQKALSLGADLVLHSATKFIGGH 362 (541)
Q Consensus 312 v~d----i~~Ia~la~~~gillvvDea~a~-~~~~~~l~~gaDivv~S~sK~lgg~ 362 (541)
-.| +.+.++.++++|+++|.|.=.-. +-..+.+..|+|.|. +.-+|+|+
T Consensus 366 G~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VM--lGsllAGt 419 (556)
T 4af0_A 366 GRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVM--MGGLLAGT 419 (556)
T ss_dssp CCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE--ESTTTTTB
T ss_pred CCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEE--Echhhccc
Confidence 334 44667778899999999985332 233566788999887 33444443
No 312
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=21.80 E-value=3.6e+02 Score=22.63 Aligned_cols=95 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred CCcEEEeCCHHHHHHHHHHHhccCCCEEEEcCCCCcchHHHHHhhcc-cCCcEEEEeCCCCHHHHHHh-ccCCCeeEEEE
Q 009172 225 AESTVIMASGMSASTVMLLALVPAGGHIVTTTDCYRKTRIFIETVLP-KMGITATVIDPADMEGLEAA-LNNNNVSLFFT 302 (541)
Q Consensus 225 ~~~~i~~sSG~~Ai~~al~all~~GD~VIv~~~~y~~~~~~~~~~l~-~~Gi~v~~vd~~dle~Le~a-i~~~~tklV~l 302 (541)
....+++..|.-+..++ ..+.+.|-.|++.+..-.. + ..+. ..|+.+...+..+.+.++++ +.. ..+|++
T Consensus 19 ~~~v~IiG~G~iG~~la-~~L~~~g~~V~vid~~~~~----~-~~~~~~~g~~~~~~d~~~~~~l~~~~~~~--ad~Vi~ 90 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIA-NLASSSGHSVVVVDKNEYA----F-HRLNSEFSGFTVVGDAAEFETLKECGMEK--ADMVFA 90 (155)
T ss_dssp CCEEEEECCSHHHHHHH-HHHHHTTCEEEEEESCGGG----G-GGSCTTCCSEEEESCTTSHHHHHTTTGGG--CSEEEE
T ss_pred CCcEEEECCCHHHHHHH-HHHHhCCCeEEEEECCHHH----H-HHHHhcCCCcEEEecCCCHHHHHHcCccc--CCEEEE
Confidence 35678888887554433 2334556666655433221 1 2233 55777655566677777665 432 578888
Q ss_pred eCCCCCCCcccCHHHHHHHHHh-CC-CEEEEE
Q 009172 303 ESPTNPFLRCVDVKLVSDLCHK-KG-AIVCID 332 (541)
Q Consensus 303 esp~NPtG~v~di~~Ia~la~~-~g-illvvD 332 (541)
+.++. .....+.+++++ .+ ..++..
T Consensus 91 ~~~~~-----~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 91 FTNDD-----STNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp CSSCH-----HHHHHHHHHHHHTSCCSEEEEE
T ss_pred EeCCc-----HHHHHHHHHHHHHCCCCeEEEE
Confidence 66541 123455566665 44 344443
No 313
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=21.69 E-value=71 Score=30.88 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC---------CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHH
Q 009172 248 AGGHIVTTTDCYRKTRIFIETVLPKMGITATVIDP---------ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLV 318 (541)
Q Consensus 248 ~GD~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~---------~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~I 318 (541)
++..+++..+.|+- +++.+|++...+.. .++.+|.+.++++++++||.|.-.++ +.+
T Consensus 176 ~~~~~v~~H~af~Y-------f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~ 241 (284)
T 3cx3_A 176 TQKTFVTQHTAFSY-------LAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASS-------KVA 241 (284)
T ss_dssp SCCCEEEEESCCHH-------HHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCC-------HHH
T ss_pred CCCEEEEECCchHH-------HHHHcCCEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHH
Confidence 46678887666642 34566776554321 13556666666656888888654432 234
Q ss_pred HHHHHhCCCEEE
Q 009172 319 SDLCHKKGAIVC 330 (541)
Q Consensus 319 a~la~~~gillv 330 (541)
..++++.|+.++
T Consensus 242 ~~ia~~~g~~v~ 253 (284)
T 3cx3_A 242 ETLVKSTGVGLK 253 (284)
T ss_dssp HHHHSSSSCCEE
T ss_pred HHHHHHcCCeEE
Confidence 456777777654
No 314
>1mct_I Trypsin inhibitor A; complex(proteinase/inhibitor); 1.60A {Momordica charantia} SCOP: g.3.2.1 PDB: 1f2s_I
Probab=21.68 E-value=18 Score=22.33 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=12.3
Q ss_pred cccccccccCCCCcccccCCCCC
Q 009172 7 SSQKILSFSSSCSSFECRSDPDF 29 (541)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~ 29 (541)
.|||++ .+|..|.|-
T Consensus 2 ~CPrIl--------m~Ck~DsDC 16 (28)
T 1mct_I 2 ICPRIW--------MECTRDSDC 16 (28)
T ss_dssp CEECCC--------CBCSSGGGS
T ss_pred CCchhh--------hhccccccc
Confidence 389999 899988874
No 315
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase, hydrolase, metal-binding, secreted; 1.40A {Bacillus amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A 1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Probab=21.53 E-value=52 Score=34.29 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=26.4
Q ss_pred CCCCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 306 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 306 ~NPtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
..-.|...+++++++.||++|+.||+|-++
T Consensus 72 d~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 101 (483)
T 3bh4_A 72 RTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (483)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 334688889999999999999999999984
No 316
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=21.29 E-value=1e+02 Score=28.22 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=52.3
Q ss_pred CCHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE--EcCCCCCCcccccccCCcEEEECCccccC
Q 009172 283 ADMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI--DGTFATPLNQKALSLGADLVLHSATKFIG 360 (541)
Q Consensus 283 ~dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~gillvv--Dea~a~~~~~~~l~~gaDivv~S~sK~lg 360 (541)
.+.++|+++++.. ...||+ -+|.+..++++.+.++++|-.+++ |-.. ++. ..+.+.+++. +..+
T Consensus 17 r~~~~l~~al~s~-~~~ifl-----l~g~i~~l~~~v~~lk~~~K~v~Vh~Dli~--Gls--~d~~ai~fL~----~~~~ 82 (192)
T 3kts_A 17 HNQKDMEKILELD-LTYMVM-----LETHVAQLKALVKYAQAGGKKVLLHADLVN--GLK--NDDYAIDFLC----TEIC 82 (192)
T ss_dssp SSSHHHHHHTTSS-CCEEEE-----CSEETTTHHHHHHHHHHTTCEEEEEGGGEE--TCC--CSHHHHHHHH----HTTC
T ss_pred cCHHHHHHHHcCC-CCEEEE-----ecCcHHHHHHHHHHHHHcCCeEEEecCchh--ccC--CcHHHHHHHH----hCCC
Confidence 4678999999764 778887 257889999999999999876665 3221 221 1122223322 3333
Q ss_pred CCCCceEEEEEeChHHHHHHHHH
Q 009172 361 GHNDVLAGSISGSGKLVTQIRNL 383 (541)
Q Consensus 361 g~g~v~gG~vv~~~~li~~l~~~ 383 (541)
+ -|++..+...+...++.
T Consensus 83 p-----dGIIsTk~~~i~~Ak~~ 100 (192)
T 3kts_A 83 P-----DGIISTRGNAIMKAKQH 100 (192)
T ss_dssp C-----SEEEESCHHHHHHHHHT
T ss_pred C-----CEEEeCcHHHHHHHHHC
Confidence 2 36777777777776653
No 317
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=21.20 E-value=4.4e+02 Score=26.32 Aligned_cols=86 Identities=21% Similarity=0.203 Sum_probs=47.8
Q ss_pred HHhhcccCCcEEEEeCCCCHHHHHHhccCCCeeEEEEe-CCCCC-C-----Cc-ccC---HHHHHHHHHhCCCEEEEEcC
Q 009172 266 IETVLPKMGITATVIDPADMEGLEAALNNNNVSLFFTE-SPTNP-F-----LR-CVD---VKLVSDLCHKKGAIVCIDGT 334 (541)
Q Consensus 266 ~~~~l~~~Gi~v~~vd~~dle~Le~ai~~~~tklV~le-sp~NP-t-----G~-v~d---i~~Ia~la~~~gillvvDea 334 (541)
++.+.+.+++.+..-...+.+..+.+++.. ...|.+- .|... + |. ... +.++.+++++.++++|.|.=
T Consensus 137 i~~i~~~~~~~Vivg~v~t~e~A~~l~~aG-aD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GG 215 (361)
T 3khj_A 137 LKEIKSKMNIDVIVGNVVTEEATKELIENG-ADGIKVGIGPGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGG 215 (361)
T ss_dssp HHHHHHHCCCEEEEEEECSHHHHHHHHHTT-CSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHhcCCcEEEccCCCHHHHHHHHHcC-cCEEEEecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECC
Confidence 333334446766543446778777777663 6777762 12211 1 11 122 34555556777999999864
Q ss_pred CCCCC-cccccccCCcEEE
Q 009172 335 FATPL-NQKALSLGADLVL 352 (541)
Q Consensus 335 ~a~~~-~~~~l~~gaDivv 352 (541)
..++- ....+..|+|.|.
T Consensus 216 I~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 216 IRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp CCSHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEEE
Confidence 33221 2345677898765
No 318
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=21.02 E-value=3.1e+02 Score=26.04 Aligned_cols=87 Identities=3% Similarity=-0.022 Sum_probs=51.1
Q ss_pred HHhccCC-CEEEEcCCCCcchHHHHHhhcccCCcEEEEe-CC-CCHHHHHHhccCCCeeEEEEeCCCCCCCcccC----H
Q 009172 243 LALVPAG-GHIVTTTDCYRKTRIFIETVLPKMGITATVI-DP-ADMEGLEAALNNNNVSLFFTESPTNPFLRCVD----V 315 (541)
Q Consensus 243 ~all~~G-D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~v-d~-~dle~Le~ai~~~~tklV~lesp~NPtG~v~d----i 315 (541)
..+.+.| |-+|+++.-+..... +...++.+|++..++ .+ .+.+.+++..+. ....||+.+-...||.-.+ +
T Consensus 110 ~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~-a~gFiY~Vs~~GvTG~~~~~~~~~ 187 (252)
T 3tha_A 110 KKAKSLGICALIVPELSFEESDD-LIKECERYNIALITLVSVTTPKERVKKLVKH-AKGFIYLLASIGITGTKSVEEAIL 187 (252)
T ss_dssp HHHHHTTEEEEECTTCCGGGCHH-HHHHHHHTTCEECEEEETTSCHHHHHHHHTT-CCSCEEEECCSCSSSCSHHHHHHH
T ss_pred HHHHHcCCCEEEeCCCCHHHHHH-HHHHHHHcCCeEEEEeCCCCcHHHHHHHHHh-CCCeEEEEecCCCCCcccCCCHHH
Confidence 3334455 778888877665443 345677788876653 33 346666665544 2457777665556776543 3
Q ss_pred HHHHHHHHhC-CCEEEE
Q 009172 316 KLVSDLCHKK-GAIVCI 331 (541)
Q Consensus 316 ~~Ia~la~~~-gillvv 331 (541)
.++.+..+++ ++++++
T Consensus 188 ~~~v~~vr~~~~~Pv~v 204 (252)
T 3tha_A 188 QDKVKEIRSFTNLPIFV 204 (252)
T ss_dssp HHHHHHHHTTCCSCEEE
T ss_pred HHHHHHHHHhcCCcEEE
Confidence 4444445544 667766
No 319
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=20.82 E-value=97 Score=30.17 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=40.8
Q ss_pred CEEEEcCCCCcchHHHHHhhcccCCcEEEEeCC------C---CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHH
Q 009172 250 GHIVTTTDCYRKTRIFIETVLPKMGITATVIDP------A---DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSD 320 (541)
Q Consensus 250 D~VIv~~~~y~~~~~~~~~~l~~~Gi~v~~vd~------~---dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~ 320 (541)
..+++..+.|+- +++.+|++...+.. . ++.+|.+.++++++++||.|.-.++ +.+..
T Consensus 184 ~~~v~~H~af~Y-------f~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~ 249 (294)
T 3hh8_A 184 KLIVTSEGCFKY-------FSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDR-------RPMET 249 (294)
T ss_dssp CCEEEEESCCHH-------HHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCS-------HHHHH
T ss_pred cEEEEECChHHH-------HHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCc-------HHHHH
Confidence 567776666532 34455666554321 1 3556666666667899999765443 34556
Q ss_pred HHHhCCCEEE
Q 009172 321 LCHKKGAIVC 330 (541)
Q Consensus 321 la~~~gillv 330 (541)
++++.|+.++
T Consensus 250 ia~~~g~~v~ 259 (294)
T 3hh8_A 250 VSKDSGIPIY 259 (294)
T ss_dssp HHHHHCCCEE
T ss_pred HHHHhCCcEE
Confidence 7888888775
No 320
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=20.77 E-value=97 Score=29.02 Aligned_cols=34 Identities=9% Similarity=-0.035 Sum_probs=28.9
Q ss_pred eeEEEEeCCCCCCCcccCHHHHHHHHHhCCCEEEE
Q 009172 297 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCI 331 (541)
Q Consensus 297 tklV~lesp~NPtG~v~di~~Ia~la~~~gillvv 331 (541)
+..|++|-. |..|.....+++.++|++||+.+|.
T Consensus 168 Pa~vicEi~-~~dG~mar~~~l~~fA~~h~l~~it 201 (217)
T 1g57_A 168 PAGVLCELT-NDDGTMARAPECIEFANKHNMALVT 201 (217)
T ss_dssp SCEEEEEBB-CTTSSBCCHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEEEe-CCCCCccCHHHHHHHHHHcCCCEEE
Confidence 567777765 6889999999999999999998874
No 321
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=20.70 E-value=1.3e+02 Score=33.35 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=53.2
Q ss_pred CEEEEcC---CCCcchHHHHHhhcccCCcEEEEeCCC-CHHHHHHhccCCCeeEEEEeCCCCCCCcccCHHHHHHHHHhC
Q 009172 250 GHIVTTT---DCYRKTRIFIETVLPKMGITATVIDPA-DMEGLEAALNNNNVSLFFTESPTNPFLRCVDVKLVSDLCHKK 325 (541)
Q Consensus 250 D~VIv~~---~~y~~~~~~~~~~l~~~Gi~v~~vd~~-dle~Le~ai~~~~tklV~lesp~NPtG~v~di~~Ia~la~~~ 325 (541)
-+|++.. ..|.--..++..++...|++|.....+ .++++.++..++++.+|.+++-. +....-++++.+..++.
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~adiVglSsl~--~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEADVHVVGVSSLA--GGHLTLVPALRKELDKL 674 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTTCSEEEEEECS--SCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcCCCEEEEeeec--HhHHHHHHHHHHHHHhc
Confidence 3555543 245444556666788889999876543 57777666554468899886654 33444477888888876
Q ss_pred CC---EEEEEc
Q 009172 326 GA---IVCIDG 333 (541)
Q Consensus 326 gi---llvvDe 333 (541)
|. +|++=.
T Consensus 675 G~~~i~VivGG 685 (727)
T 1req_A 675 GRPDILITVGG 685 (727)
T ss_dssp TCTTSEEEEEE
T ss_pred CCCCCEEEEcC
Confidence 54 777654
No 322
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A 1ud6_A 1ud8_A 1ud3_A
Probab=20.32 E-value=56 Score=34.01 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=25.9
Q ss_pred CCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
-.|...+++++++.||++|+.||+|-++.
T Consensus 76 ~~Gt~~df~~lv~~aH~~Gi~VilD~V~N 104 (480)
T 1ud2_A 76 KYGTKAQLERAIGSLKSNDINVYGDVVMN 104 (480)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 36888899999999999999999999853
No 323
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase, alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A {Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A* 2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Probab=20.27 E-value=56 Score=34.05 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=25.5
Q ss_pred CCCcccCHHHHHHHHHhCCCEEEEEcCC
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTF 335 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillvvDea~ 335 (541)
-.|...+++++++.||++|+.||+|-++
T Consensus 78 ~~Gt~~df~~Lv~~aH~~Gi~VilD~V~ 105 (485)
T 1wpc_A 78 KYGTRSQLQAAVTSLKNNGIQVYGDVVM 105 (485)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 3688889999999999999999999984
No 324
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola (beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A {Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A* 1mxd_A* 3qgv_A*
Probab=20.24 E-value=57 Score=33.61 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=25.8
Q ss_pred CCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 308 PFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 308 PtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
..|...+++++++.||++|+.||+|-++.
T Consensus 82 ~~Gt~~df~~lv~~~H~~Gi~VilD~V~N 110 (435)
T 1mxg_A 82 RFGSKEELVRLIQTAHAYGIKVIADVVIN 110 (435)
T ss_dssp SSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEECcc
Confidence 36888899999999999999999999843
No 325
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability; 2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1 c.1.8.1
Probab=20.07 E-value=57 Score=34.44 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=26.6
Q ss_pred CCCCCcccCHHHHHHHHHhCCCEEEEEcCCC
Q 009172 306 TNPFLRCVDVKLVSDLCHKKGAIVCIDGTFA 336 (541)
Q Consensus 306 ~NPtG~v~di~~Ia~la~~~gillvvDea~a 336 (541)
..-.|...+++++++.||++|+.||+|-++.
T Consensus 75 dp~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~N 105 (515)
T 1hvx_A 75 RTKYGTKAQYLQAIQAAHAAGMQVYADVVFD 105 (515)
T ss_dssp SCSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEEecC
Confidence 3336888899999999999999999999843
Done!