BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009173
(541 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 284/419 (67%), Positives = 333/419 (79%), Gaps = 19/419 (4%)
Query: 125 RLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
R V Q+ LPD VD+ QR SVL PS++ISY S RPLS+ ++R++TLD +T QQ
Sbjct: 238 RPLEVVPQQSLPDPRVDLFQQRGSVLPPIPSNTISYASGSRPLSINTERISTLDPKTSQQ 297
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
EV F+ILCSND+VG VIGKGGTI++ALQ+EAGA ISVGA + ECDERLIT+TASE PESR
Sbjct: 298 EVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITASENPESR 357
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
YSPAQ V+LVF+R IE EKGLD S +KG V+ARLVV SNQVGCL+GKGGTIISEMR
Sbjct: 358 YSPAQNGVILVFNRSIEAGIEKGLD-SGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 416
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-SGTLNTAR 362
K +G IRII SDQ+ KC SEND+VVQISGEF V+D +Y++TGRLRDN F S TLN A
Sbjct: 417 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAG 476
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-PPLTQGMDHLGLSHSLDCPSSP 421
RS SS + E SPY R++DPASFG+HSSV VS FS+ LTQ MDHLGLSHSLD P+SP
Sbjct: 477 IRS-SSAMNEISPYGRVRDPASFGLHSSVGVSPSFSRHTTLTQSMDHLGLSHSLDHPTSP 535
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+LW +QTVTGV+ R + KGG+ELGSGSKSAI+TNTTVEI++PENVIG
Sbjct: 536 RLWPSQTVTGVNPR--------------NIKGGIELGSGSKSAIITNTTVEIVIPENVIG 581
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540
SVYGENG+NL RLR+ISGAKV +HEPR G++DRIV+ISGTPDETQAAQSLLQAFI TGP
Sbjct: 582 SVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVIISGTPDETQAAQSLLQAFIHTGP 640
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 112/209 (53%), Gaps = 20/209 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA-------- 237
V+FR+LC ++G VIGK G I++ LQS+ GA I V + D R+I V A
Sbjct: 51 VAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNRRI 110
Query: 238 ---SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
E S AQ+AV+ VF R++E + + G +V+ RL+ ++QVG ++G
Sbjct: 111 ALQGSSEEVEASAAQEAVLRVFERILEVAA---VVDGVPPGGVVSCRLLAETSQVGSVIG 167
Query: 295 KGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
KGG ++ ++R+ +G+ I+++ +++L C + D +V+I G+ VK A+ V+ RL+D
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVEIEGDVLAVKKALVAVSRRLQD-- 225
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDP 382
N +T+ E P L DP
Sbjct: 226 ---CPNVDKTKLIGGRPLEVVPQQSLPDP 251
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/419 (67%), Positives = 333/419 (79%), Gaps = 19/419 (4%)
Query: 125 RLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
R V Q+ LPD VD+ QR SVL PS++ISY S RPLS+ ++R++TLD +T QQ
Sbjct: 175 RPLEVVPQQSLPDPRVDLFQQRGSVLPPIPSNTISYASGSRPLSINTERISTLDPKTSQQ 234
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
EV F+ILCSND+VG VIGKGGTI++ALQ+EAGA ISVGA + ECDERLIT+TASE PESR
Sbjct: 235 EVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITASENPESR 294
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
YSPAQ V+LVF+R IE EKGLD S +KG V+ARLVV SNQVGCL+GKGGTIISEMR
Sbjct: 295 YSPAQNGVILVFNRSIEAGIEKGLD-SGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 353
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-SGTLNTAR 362
K +G IRII SDQ+ KC SEND+VVQISGEF V+D +Y++TGRLRDN F S TLN A
Sbjct: 354 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAG 413
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-PPLTQGMDHLGLSHSLDCPSSP 421
RS SS + E SPY R++DPASFG+HSSV VS FS+ LTQ MDHLGLSHSLD P+SP
Sbjct: 414 IRS-SSAMNEISPYGRVRDPASFGLHSSVGVSPSFSRHTTLTQSMDHLGLSHSLDHPTSP 472
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+LW +QTVTGV+ R + KGG+ELGSGSKSAI+TNTTVEI++PENVIG
Sbjct: 473 RLWPSQTVTGVNPR--------------NIKGGIELGSGSKSAIITNTTVEIVIPENVIG 518
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540
SVYGENG+NL RLR+ISGAKV +HEPR G++DRIV+ISGTPDETQAAQSLLQAFI TGP
Sbjct: 519 SVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVIISGTPDETQAAQSLLQAFIHTGP 577
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 284/419 (67%), Positives = 333/419 (79%), Gaps = 19/419 (4%)
Query: 125 RLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
R V Q+ LPD VD+ QR SVL PS++ISY S RPLS+ ++R++TLD +T QQ
Sbjct: 159 RPLEVVPQQSLPDPRVDLFQQRGSVLPPIPSNTISYASGSRPLSINTERISTLDPKTSQQ 218
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
EV F+ILCSND+VG VIGKGGTI++ALQ+EAGA ISVGA + ECDERLIT+TASE PESR
Sbjct: 219 EVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECDERLITITASENPESR 278
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
YSPAQ V+LVF+R IE EKGLD S +KG V+ARLVV SNQVGCL+GKGGTIISEMR
Sbjct: 279 YSPAQNGVILVFNRSIEAGIEKGLD-SGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 337
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-SGTLNTAR 362
K +G IRII SDQ+ KC SEND+VVQISGEF V+D +Y++TGRLRDN F S TLN A
Sbjct: 338 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAG 397
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-PPLTQGMDHLGLSHSLDCPSSP 421
RS SS + E SPY R++DPASFG+HSSV VS FS+ LTQ MDHLGLSHSLD P+SP
Sbjct: 398 IRS-SSAMNEISPYGRVRDPASFGLHSSVGVSPSFSRHTTLTQSMDHLGLSHSLDHPTSP 456
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+LW +QTVTGV+ R + KGG+ELGSGSKSAI+TNTTVEI++PENVIG
Sbjct: 457 RLWPSQTVTGVNPR--------------NIKGGIELGSGSKSAIITNTTVEIVIPENVIG 502
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540
SVYGENG+NL RLR+ISGAKV +HEPR G++DRIV+ISGTPDETQAAQSLLQAFI TGP
Sbjct: 503 SVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVIISGTPDETQAAQSLLQAFIHTGP 561
>gi|449438568|ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 257/417 (61%), Positives = 316/417 (75%), Gaps = 9/417 (2%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
AV E LPDLH+D + QRNSVL PSSS + S + LS+++D + +D QQ+V F
Sbjct: 247 AVIHETLPDLHMDHILQRNSVLPILPSSSNIFASGIHSLSIDADMLPPVDTNVAQQDVVF 306
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+ILC+ND++G VIGKGGTI+RALQ+E+GA +SVG ++ CDERLI++TASE ESRYSPA
Sbjct: 307 KILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIESRYSPA 366
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
QKAVVLVFSR ++ EK + SS+KG V ARLVV SNQVGC+LGKGG IISE+RKVTG
Sbjct: 367 QKAVVLVFSRSVDVAIEKWQE-SSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTG 425
Query: 309 TSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS-- 365
T+IRII SDQ+ C +E+D +VQISGEFS V+DA+YNVTGRLRDN FS L+ + TR+
Sbjct: 426 TNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLFSSVLSNSGTRNGG 485
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSH-DFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+SV ETSPY R++D A + V SH F Q Q D LGLSHSLD PSSP LW
Sbjct: 486 GTSVYPETSPYGRVRDTAPLVRSTPVGTSHGSFMQHSTAQSSDDLGLSHSLDSPSSPGLW 545
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
Q+++G+ R SD GR GL H+ G++LGSG+K+AIVTNTTVEI+VP++VI VY
Sbjct: 546 PPQSLSGISSRAISDAGR----GLPSHRSGVQLGSGNKTAIVTNTTVEIVVPDDVISLVY 601
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
GENG+NL RLRQISGAKVIVHEP ++DR++VISGTPDETQAAQSLL AFILTG S
Sbjct: 602 GENGTNLTRLRQISGAKVIVHEPDPITSDRLIVISGTPDETQAAQSLLHAFILTGSS 658
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V+FR+LC ++G VIGK G +I+ LQ G I V E +R++TV S
Sbjct: 53 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 112
Query: 239 --------EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
G E S AQ+ ++ VF R++E +E + +V RL+ QVG
Sbjct: 113 FLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLLADVAQVG 172
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GKGG ++ ++RK +G IR+++D+L C +D +++I G+ +K A+ V+ RL+
Sbjct: 173 SVIGKGGKVVEKIRKESGCRIRVLTDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQ 232
Query: 351 D 351
D
Sbjct: 233 D 233
>gi|356546743|ref|XP_003541782.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 663
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/382 (63%), Positives = 290/382 (75%), Gaps = 6/382 (1%)
Query: 160 YVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI 219
Y + V LS E +RV++L+ + QQEVSFRILCSND+VG VIGKGG I+RALQSE GA I
Sbjct: 285 YATRVHSLSAEVNRVSSLEPKALQQEVSFRILCSNDRVGGVIGKGGNIVRALQSETGATI 344
Query: 220 SVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
S+G + EC++RLIT+ ASE PESRYSPAQKA VLVFSR IE EK LD NKG V
Sbjct: 345 SIGPLVAECEDRLITIAASENPESRYSPAQKAAVLVFSRSIEVGFEKELDSGLNKGSTVT 404
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKV 338
RLVV S+QVGCL+GKGG I+SE+RK TG +IRII +DQ+ KC S+ND+VVQISGEFS V
Sbjct: 405 VRLVVPSSQVGCLIGKGGVIVSEIRKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSV 464
Query: 339 KDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS 398
+DA+YN TGRLRDN F T N+A TRS SS+ +TSPY +D G SH S
Sbjct: 465 QDALYNATGRLRDNLFVSTQNSAGTRSLSSLRVDTSPYGIQQDFVPHGSQLPATTSHCLS 524
Query: 399 QPPLTQGMDHLGLSHSLDCPSSPKLWTAQ-TVTGVHLRGSSDVGRGWSQGLSHHKGGLEL 457
+ QG+DHLGLS +LD PSSP LWT + G++ R +D +S GL+ KGGLEL
Sbjct: 525 RHTFAQGIDHLGLSRNLDHPSSPGLWTRNLDLAGINSRSIND----FSLGLTSRKGGLEL 580
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
SGSKSAIVTNTTVEI+VP++ I VYGENG NL+RLRQISGAKV++HEPR G++DRI+V
Sbjct: 581 VSGSKSAIVTNTTVEIVVPDDTIDCVYGENGRNLVRLRQISGAKVVIHEPRPGTSDRIIV 640
Query: 518 ISGTPDETQAAQSLLQAFILTG 539
ISGTPDETQAAQSLLQAFIL+G
Sbjct: 641 ISGTPDETQAAQSLLQAFILSG 662
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 102/177 (57%), Gaps = 14/177 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+FR+LC+ ++G VIGK G++I+ LQ GA I + E +R+I V A +
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQESPDRVILVIADAALSCKV 104
Query: 246 ----------SPAQKAVVLVFSRLIEGTSE-KGLDFSSNKGLLVNARLVVASNQVGCLLG 294
S AQ+A++ VF R++E +E +G+D +++ RLV S Q G ++G
Sbjct: 105 LLRNEEVVEVSKAQEALLKVFDRILEVAAEMEGVDVGDR---VMSCRLVADSAQAGSVIG 161
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
KGG ++ ++K TG IR+++D L C S +D +++I G S VK A+ V+ RL+D
Sbjct: 162 KGGKVVERIKKETGCKIRVLTDDLPLCASASDEMIEIEGRVSSVKKALVAVSQRLQD 218
>gi|449516663|ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 248/415 (59%), Positives = 302/415 (72%), Gaps = 25/415 (6%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
AV E LPDLH+D + QRNSVL PSSS + S + LS+++D + +D QQ+V F
Sbjct: 252 AVIHETLPDLHMDHILQRNSVLPILPSSSNIFASGIHSLSIDADMLPPVDTNVAQQDVVF 311
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+ILC+ND++G VIGKGGTI+RALQ+E+GA +SVG ++ CDERLI++TASE ESRYSPA
Sbjct: 312 KILCANDRIGGVIGKGGTIVRALQNESGATVSVGPSVTGCDERLISITASENIESRYSPA 371
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
QKAVVLVFSR ++ EK + SS+KG V ARLVV SNQVGC+LGKGG IISE+RKVTG
Sbjct: 372 QKAVVLVFSRSVDVAIEKWQE-SSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTG 430
Query: 309 TSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTS 367
T+IRII SDQ+ C +E+D +VQISGEFS V+DA+YNVTGRLRDN F
Sbjct: 431 TNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLF------------- 477
Query: 368 SVLTETSPYSRLKDPASFGVHSSVAVSH-DFSQPPLTQGMDHLGLSHSLDCPSSPKLWTA 426
PY R++D A + V SH F Q Q D LGLSHSLD PSSP LW
Sbjct: 478 -----LVPYGRVRDTAPLVRSTPVGTSHGSFMQHSTAQSSDDLGLSHSLDSPSSPGLWPP 532
Query: 427 QTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGE 486
Q+++G+ R SD GR GL H+ G++LGSG+K+AIVTNTTVEI+VP++VI VYGE
Sbjct: 533 QSLSGISSRAISDAGR----GLPSHRSGVQLGSGNKTAIVTNTTVEIVVPDDVISLVYGE 588
Query: 487 NGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
NG+NL RLRQISGAKVIVHEP + DR++VISGTPDETQAAQSLL AFILTG S
Sbjct: 589 NGTNLTRLRQISGAKVIVHEPDPITNDRLIVISGTPDETQAAQSLLHAFILTGSS 643
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V+FR+LC ++G VIGK G +I+ LQ G I V E +R++TV S
Sbjct: 58 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRVEEAPSESPDRVVTVIGSPALTSRV 117
Query: 239 --------EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
G E S AQ+ ++ VF R++E +E + +V RL+ QVG
Sbjct: 118 FLEQNSGASGEEVEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLLADVAQVG 177
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GKGG ++ ++RK +G IR+++D+L C +D +++I G+ +K A+ V+ RL+
Sbjct: 178 SVIGKGGKVVEKIRKESGCRIRVLTDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQ 237
Query: 351 D 351
D
Sbjct: 238 D 238
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/421 (58%), Positives = 292/421 (69%), Gaps = 45/421 (10%)
Query: 160 YVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI 219
Y + + L E +RV++L+ + +QEV+FRILCSND+VG VIGKGG I+RALQSE GA I
Sbjct: 293 YATRIHSLPTEVNRVSSLEPKALKQEVTFRILCSNDRVGGVIGKGGNIVRALQSETGATI 352
Query: 220 SVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
S+G + EC++RLIT+ ASE PESRYSPAQKA VLVFSR IE EKGLD NKG +V
Sbjct: 353 SIGPAVAECEDRLITIAASENPESRYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIVT 412
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKV 338
RLVV S+QVGCL+GKGG I+SEMRK TG +IRII +DQ+ KC S+ND+VVQISGEFS V
Sbjct: 413 VRLVVPSSQVGCLIGKGGVIVSEMRKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSV 472
Query: 339 KDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS 398
+DA+YN GRLRDN F T N+A TRS SS+ +TSPY R +D G A SH S
Sbjct: 473 QDALYNAMGRLRDNLFVSTQNSAGTRSLSSLRVDTSPYGRQQDVVPLGSQLPPATSHSLS 532
Query: 399 QPPLTQGMDHLGLSHSLDCPSSPKLWTAQ------------------------------- 427
+ QG+DHLGLS +LD PSSP LWT
Sbjct: 533 RHTFAQGIDHLGLSRNLDHPSSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTRNLDHRP 592
Query: 428 ---------TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
TV G++ RG +D +S GL+ KGGLEL SGSKSAIVTNT VEI+VP++
Sbjct: 593 SSPGLWAPPTVAGINSRGIND----FSLGLTSRKGGLELVSGSKSAIVTNTIVEIVVPDD 648
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
I VYGENGSNL RLRQISGA V+VHEPR G++DRI+VISGTPDETQAAQSLLQAFIL+
Sbjct: 649 TIDCVYGENGSNLARLRQISGANVVVHEPRPGTSDRIIVISGTPDETQAAQSLLQAFILS 708
Query: 539 G 539
G
Sbjct: 709 G 709
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 101/179 (56%), Gaps = 14/179 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR- 244
V+FR+LC+ ++G VIGK G++I+ LQ GA I + E +R+I V A +
Sbjct: 45 VAFRLLCNASRIGGVIGKSGSVIKTLQQSTGAKIRIEDAPQELPDRIILVIADAALSGKI 104
Query: 245 ---------YSPAQKAVVLVFSRLIE-GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
S AQ+A++ VF R++ G ++ +D +++ RLV + Q G ++G
Sbjct: 105 LLRNEEVIEVSKAQEALLKVFDRILRSGGGDRSVDVGDR---VMSCRLVADAAQAGSVIG 161
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
KGG ++ ++K TG IR+++D L C S +D +++I G S VK A+ V+ RL+D H
Sbjct: 162 KGGKVVERIKKETGCKIRVLTDDLPLCASASDEIIEIEGRVSSVKKALVAVSQRLQDCH 220
>gi|255563372|ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 698
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/482 (54%), Positives = 306/482 (63%), Gaps = 93/482 (19%)
Query: 125 RLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
+ F AV QE LP++ V+I QRN ++ T ++++S LE+DRV +LD + QQ
Sbjct: 244 KYFEAVPQEPLPEMRVEIAPQRNIMVPTMQNNAVSCAPVPHNFLLETDRVPSLDMKLFQQ 303
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
EV F+ILC ND VG VIGKGGTII+ALQ+E GA I++GAT+ E DERLITV ASE PESR
Sbjct: 304 EVVFKILCPNDMVGGVIGKGGTIIKALQNETGASITIGATIAESDERLITVIASENPESR 363
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
YS AQKAVVLVFS RLVV SNQVGCLLGKGG IIS+MR
Sbjct: 364 YSAAQKAVVLVFS-----------------------RLVVPSNQVGCLLGKGGIIISDMR 400
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
K TGTSI+I++ DQL KC+ EN++VVQISG+F VKDAVY+VTGRLRDN FS L+T T
Sbjct: 401 KTTGTSIKILAGDQLPKCVPENEQVVQISGDFMNVKDAVYHVTGRLRDNLFSSALSTPVT 460
Query: 364 RSTSSVLTETSPYSRLKDPA---------------------------------------- 383
RST +V+TE SPY RLK+P
Sbjct: 461 RST-TVITEASPYGRLKEPLRDAFKEPLNTFREPLGDAFRDPLRAAMRGPLRDARRDPLR 519
Query: 384 -SFGVHSSVAVSHDFSQPPLTQGMDHL----GLSHS-------------------LDCPS 419
SFG + +PP +L G+SHS LD P
Sbjct: 520 DSFGDTLRDQLRDTLKEPPRGPAPYNLHPPIGVSHSLNRHNTLTQSMDHLGLSHSLDGPI 579
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
SP+LW +QT+ G++ R D RG++ KGGLELGSGSKSAIVTNTTVEI VPENV
Sbjct: 580 SPRLWASQTMAGINPRVVPDASRGFTS----FKGGLELGSGSKSAIVTNTTVEIRVPENV 635
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
IGSVYGEN SNL RLRQISGAKVIVHEPRLGS+DRI+VISGTPDETQAAQSLLQAFILTG
Sbjct: 636 IGSVYGENDSNLTRLRQISGAKVIVHEPRLGSSDRIIVISGTPDETQAAQSLLQAFILTG 695
Query: 540 PS 541
S
Sbjct: 696 QS 697
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 129/246 (52%), Gaps = 10/246 (4%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKG 204
Q N+ P+ + + +S RP +++ A VSFR+LC ++G +IGK
Sbjct: 15 QYNAAGMPDPNPTANGLSNKRPKQPPANQNAAAPLPLPPGHVSFRLLCHASRIGGIIGKS 74
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTAS---------EGPESRYSPAQKAVVLV 255
GTII+ LQ ++GA I + + E +R+ITV A E E S AQ+ ++ V
Sbjct: 75 GTIIKQLQQQSGAKIRIEESPAESSDRVITVIAEGQIVSKVRVESEEVDVSRAQEGLIRV 134
Query: 256 FSRLIEGTSE-KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
F R++E +E G++ + G +V+ R++ S Q G ++GKGG ++ ++RK G IR++
Sbjct: 135 FERILEVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVIGKGGKVVEKIRKDCGVKIRVL 194
Query: 315 SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETS 374
+D+L C N+ +++I G+ VK A+ V+ L+D ++ +V E
Sbjct: 195 TDKLPVCAGPNEEMIEIEGDILSVKKALIAVSRCLQDCQPVDKPRVGSSKYFEAVPQEPL 254
Query: 375 PYSRLK 380
P R++
Sbjct: 255 PEMRVE 260
>gi|356519471|ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 591
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 296/415 (71%), Gaps = 38/415 (9%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
+V E L +LH+D QR+S L+T + S S LS E +RV+ LD + QQEV+F
Sbjct: 213 SVPLESLTNLHIDRRLQRSSTLSTLSNRSNGNASGAPKLSAEVNRVSALDPKALQQEVTF 272
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE-GPESRYSP 247
RI+CSND+VGAVIGKGG+I+RALQ+E+GA IS G ++ EC++RL+T+TASE PESRYSP
Sbjct: 273 RIICSNDRVGAVIGKGGSIVRALQNESGAIISFGPSLVECEDRLVTITASEQNPESRYSP 332
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
AQKAVVLVFS+ +E EKGLD S K V A+LVV SNQVGCLLGKGG I+SEMRK T
Sbjct: 333 AQKAVVLVFSKSVEAGVEKGLDMGSKKESYVTAQLVVPSNQVGCLLGKGGAIVSEMRKAT 392
Query: 308 GTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST 366
G +IR+I +D++ KC+S+ND++VQISGEFS V+ A+YN TGRLRDN F T N+ RS
Sbjct: 393 GANIRVIGNDKVPKCVSDNDQLVQISGEFSNVQAAIYNATGRLRDNLFVSTQNSGGARSL 452
Query: 367 SSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTA 426
SSVL+ P +VAVS ++ HSL P L
Sbjct: 453 SSVLSGGKP--------------TVAVSLSLNR-------------HSL-----PGLQAP 480
Query: 427 QTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGE 486
QTV G++ R V G S+GL+ KGGLEL SGSK+AIVTNTTV+I VP++VIGSVYGE
Sbjct: 481 QTVAGINSR----VTNGVSRGLTSQKGGLELVSGSKTAIVTNTTVQIAVPDDVIGSVYGE 536
Query: 487 NGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
NGSNL RLRQISGAKVIVHEPR G++DR ++ISGTPDET+AAQSLLQAFIL G S
Sbjct: 537 NGSNLARLRQISGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFILAGSS 591
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 105/174 (60%), Gaps = 3/174 (1%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA- 237
+R V+FR+LC +VGA+IGK G +I+ LQ GA I + P+ +R+I V+A
Sbjct: 18 SRPYTTHVTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRIEDAPPDSPDRVILVSAP 77
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ + S AQ A++ VF R+++ +E ++ +V+ RL+ ++QVG ++GK G
Sbjct: 78 AAASDGEVSTAQVALLKVFDRVLDVAAETAGTEVGDR--VVSCRLLADTSQVGAVIGKAG 135
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++ ++R TG IR++++ L C + +D +V++ G+ + VK A+ V+G L+D
Sbjct: 136 KVVEKIRMDTGCKIRVLNEGLPACTAPSDEIVEVEGQLTSVKKALVAVSGCLQD 189
>gi|356528011|ref|XP_003532599.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 433
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/414 (57%), Positives = 293/414 (70%), Gaps = 37/414 (8%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
+V E L +LH+D QR+S L+T + S S LS E +RV+ LD + QQEV+F
Sbjct: 56 SVPLESLTNLHIDHHLQRSSTLSTLSNRSNGNASGAHKLSAEVNRVSALDPKAYQQEVTF 115
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
RI+CSND+VGAVIGKGG+I+RALQ+E+GA ISVG ++ EC++RL+T+TASE PES YSPA
Sbjct: 116 RIICSNDRVGAVIGKGGSIVRALQNESGAIISVGPSLVECEDRLVTITASENPESTYSPA 175
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
QKAVVLVFS+ +E EKGL+ S K V ARLVV SNQVGCLLGKGG I+SEMRK TG
Sbjct: 176 QKAVVLVFSKSVEAGVEKGLELGSKKEPYVTARLVVPSNQVGCLLGKGGAIVSEMRKATG 235
Query: 309 TSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTS 367
+IR+I +DQ+ C+S+ND++VQISG FS V+ A++N TGRLRD+ F T N+ RS S
Sbjct: 236 ANIRVIGNDQVPMCVSDNDQLVQISGVFSNVQAAIHNATGRLRDHLFVSTQNSGGARSLS 295
Query: 368 SVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQ 427
SVL P L +SHSL+ S P L Q
Sbjct: 296 SVLAGGQPT--------------------------------LAISHSLNRHSLPGLQAPQ 323
Query: 428 TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGEN 487
TV G++ RG++ G S+GL KGGLEL SGSK+AIVTNTTV+I+VP++VIGSVYGEN
Sbjct: 324 TVAGINSRGTN----GVSRGLISRKGGLELISGSKTAIVTNTTVQIVVPDDVIGSVYGEN 379
Query: 488 GSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
GSNL RLRQISGAKVIVHEPR G++DR ++ISGTPDET+AAQSLLQAFIL G S
Sbjct: 380 GSNLARLRQISGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFILAGSS 433
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 233/450 (51%), Positives = 295/450 (65%), Gaps = 40/450 (8%)
Query: 101 RPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISY 160
RP E F E+S AV E L DL++D QR+S ++T+ S
Sbjct: 198 RPYEAFQNETS-----------------AVPHEGLTDLNMDFRLQRSSAISTSSIRSNGV 240
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
S PLS+E +RV++LD +QEV+FRILCS D++GAV+GKGG+I++ALQ+E GA IS
Sbjct: 241 PSKSHPLSVEDNRVSSLDPEALKQEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANIS 300
Query: 221 VGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
VG + EC++RLIT+TA E PESR+SPAQ+AVVLVF R IE EK +D+ SNK V A
Sbjct: 301 VGPPVVECEDRLITITALENPESRFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTA 360
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVK 339
+LVV SNQVG LLGKGG I+SEMRK T TSIRI + ++ KC S ND+VVQISGE V+
Sbjct: 361 QLVVPSNQVGVLLGKGGAIVSEMRKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVR 420
Query: 340 DAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD--PASFGVHSSVAVSHDF 397
DA+YN T RLRD+ F N+ T PY R +D P G S V +H
Sbjct: 421 DALYNATRRLRDHIFLIAQNSG----------GTGPYRRPRDSIPLGLGGQSVVGSNHGP 470
Query: 398 SQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL 457
S L+Q MDHL LS + +S +W + V G + R + D GR L+ +G LEL
Sbjct: 471 SIHSLSQSMDHLTLSRNSGRSASSGVWAPKVVGGKNSRYTDDAGR----RLNPREGDLEL 526
Query: 458 GSGS-----KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
SGS +AI+TNTTVEI++P ++IGSVYGENGSNL +LRQISGAKV+ HEPR G++
Sbjct: 527 ASGSNTVIGNAAIITNTTVEIMLPNDIIGSVYGENGSNLDQLRQISGAKVVFHEPRPGTS 586
Query: 513 DRI-VVISGTPDETQAAQSLLQAFILTGPS 541
DR +V+SGTPDETQAAQSLLQA+IL G S
Sbjct: 587 DRAKIVLSGTPDETQAAQSLLQAYILNGSS 616
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 163/335 (48%), Gaps = 39/335 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V FR+LC ++GA IGK G++I++LQ GA I + +C ER+I V + +
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDV 79
Query: 246 S-PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
S Q+A++ VF R+++ + + D + +V+ RL+V + Q G ++GKGG +++++R
Sbjct: 80 SLNPQEALLKVFERILDVAAAES-DGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIR 138
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
TG IR+++D+L C +D +++I G S VK A+ V GRL+D RT+
Sbjct: 139 ADTGCRIRVLNDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQD-----CPPLDRTK 193
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+ T PY ++ S AV H +G+ L + +L
Sbjct: 194 -----MMGTRPYEAFQNETS-------AVPH--------EGLTDLNMDF--------RLQ 225
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
+ ++ +R + + + ++ + S A+ T I+ + IG+V
Sbjct: 226 RSSAISTSSIRSNGVPSKSHPLSVEDNR----VSSLDPEALKQEVTFRILCSGDRIGAVL 281
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
G+ GS + L+ +GA + V P + DR++ I+
Sbjct: 282 GKGGSIVKALQNETGANISVGPPVVECEDRLITIT 316
>gi|22328051|ref|NP_201244.2| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010501|gb|AED97884.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 857
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 254/636 (39%), Positives = 347/636 (54%), Gaps = 118/636 (18%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISH 60
M G+R E Q ++H+P+E QES+ R VE ++ R + P T+ R D I H
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 61 ETIR-RSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEAL- 118
+T+ R +EAVP + +EA Q++L R +E+ Q+ LRR ++V E+ + S+ L
Sbjct: 292 DTLHLRRIEAVPQGALRMHIEADRQDVLRRHVEADRQDALRRRIDVVPQETLYMPSDVLR 351
Query: 119 ------------SIETQHRLFGAV------------------------SQEILPDLHVDI 142
S ++ HR F V +QE L D
Sbjct: 352 GDCFRQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQSADY 411
Query: 143 LSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKV 197
L+ R S L T P S+S++ + ++P E + Q+V F+ILCS +
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQDVVFKILCSTENA 463
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G VIG GG ++R L SE GAFI+VG T+ +C+ERLI VTASE PE + SPAQKA++L+FS
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFS 523
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-D 316
RL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK TG +I+I+ +
Sbjct: 524 RLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVE 581
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTE---- 372
Q KCISEND+VVQI+GEF V++A++++T RLRD+ FS ++ + +S+S++ TE
Sbjct: 582 QNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYD 641
Query: 373 ------------------------------------------------TSPYSRLKDPAS 384
T PY R +DP
Sbjct: 642 RQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFP 701
Query: 385 FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ S SH+F + MDH SH L + PS +LW + RG SD
Sbjct: 702 DRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAAP--RGLSDA--- 751
Query: 444 WSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVI 503
S GLS + G LGSG KSAIVTNTTVEI VP N + VYGE G NL +LRQISGA+VI
Sbjct: 752 -SGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVI 810
Query: 504 VHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
+HEP LG++DRI+VISGTPD+TQAAQ+LL AFILTG
Sbjct: 811 IHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 846
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|297794027|ref|XP_002864898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310733|gb|EFH41157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 255/643 (39%), Positives = 359/643 (55%), Gaps = 122/643 (18%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHE------------TIRRPVDTIPH 48
M G+R E Q ++H+P+E QES+ R +E ++ T+ RP D PH
Sbjct: 230 MVGNRPLEKEFQASLHRPIETIIQESLPRSIEVNPYDYRLRKDEIFPRGTLARPSDVNPH 289
Query: 49 ETIH-RPLDTISHETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFA 107
+T+H R ++ + +R +EA D + R VEA Q+ L R +E+ Q++LRR ++V
Sbjct: 290 DTLHHRHIEAVPQGALRMHIEADRQDALRRHVEADRQDALRRHIEADRQDVLRRHIDVVP 349
Query: 108 PESSHRSSEAL-------------SIETQHRLFGAVS----------------------- 131
E+ + S+ + S ++ HR F V
Sbjct: 350 RETLYMPSDVVRGDCFRQHKERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETI 409
Query: 132 -QEILPDLHVDILSQRNSVLTT---APSSSISYVSAVRPLSLESDRVATLDARTQQQEVS 187
QE L D L+ R S+L T S+SI+ ++++P E + Q+V
Sbjct: 410 PQETLRRQSADYLAHRYSILDTHSITTSASIANTASMKPPPSEVE--------VGNQDVV 461
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
F+ILCS + G VIG GG ++R L SE GAFI+VG T+ +C+ERLI VTA E PE + SP
Sbjct: 462 FKILCSTENAGGVIGSGGKVVRMLHSETGAFINVGNTLADCEERLIAVTAPENPECQSSP 521
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
AQKA++L+FSRL E +++K LD + ARLVV ++Q+GC+LGKGG I+SEMRK T
Sbjct: 522 AQKAIMLLFSRLFELSTKKILDNGPRTS--ITARLVVPTSQIGCVLGKGGVIVSEMRKTT 579
Query: 308 GTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST 366
G +I+I+ +Q KC+SEND+V+QI+GEF V++A++++T RLRD+ FS ++ + T+S+
Sbjct: 580 GATIQILKVEQNPKCVSENDQVIQITGEFPNVREAIFHITSRLRDSVFSNSMKNSITKSS 639
Query: 367 SSVLTETSPYSRLKDPASFGVHSSVAV-------------------SH---DFSQPPLTQ 404
S++ TE + + +P S G H SV+ SH ++S+P T
Sbjct: 640 SALTTERIYHRQSDNPLSIGSHQSVSNPPTNSSSLHRRSEDSFLSGSHSSVNYSRPVGTD 699
Query: 405 ---------------------------GMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRG 436
MDH +SH L + PS +LW + RG
Sbjct: 700 PYVRPEDPFPDRFNPSAGYSPNFGRRFTMDHSDISHHLTEVPS--RLWASPPPAAP--RG 755
Query: 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
SD S GLS + G LGSG KSAIVTNTTVEI VPEN + VYGE G NL +LRQ
Sbjct: 756 LSDA----SGGLSSARAGHALGSGHKSAIVTNTTVEIRVPENAMSFVYGEQGYNLEQLRQ 811
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
ISGA+VIVHEP LG++DRI+VISGTPD+TQAAQ+LL AFILTG
Sbjct: 812 ISGARVIVHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 854
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 88/186 (47%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 46 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQADSKSRVK 105
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 106 LGVNNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 155
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I ++ L C +D +V+I G VK A+ ++
Sbjct: 156 SSHAGAVIGKGGQMVGSIRKETGCKISIRTENLPICADTDDEMVEIEGNAIAVKKALVSI 215
Query: 346 TGRLRD 351
+ L++
Sbjct: 216 SRCLQN 221
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 42 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPFGSPDRVITIIAQAD 99
>gi|334188619|ref|NP_001190612.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010502|gb|AED97885.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 866
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 252/641 (39%), Positives = 345/641 (53%), Gaps = 119/641 (18%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISH 60
M G+R E Q ++H+P+E QES+ R VE ++ R + P T+ R D I H
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 61 ETIR-RSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEAL- 118
+T+ R +EAVP + +EA Q++L R +E+ Q+ LRR ++V E+ + S+ L
Sbjct: 292 DTLHLRRIEAVPQGALRMHIEADRQDVLRRHVEADRQDALRRRIDVVPQETLYMPSDVLR 351
Query: 119 ------------SIETQHRLFGAV------------------------SQEILPDLHVDI 142
S ++ HR F V +QE L D
Sbjct: 352 GDCFRQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQSADY 411
Query: 143 LSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKV 197
L+ R S L T P S+S++ + ++P E + Q+V F+ILCS +
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQDVVFKILCSTENA 463
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G VIG GG ++R L SE GAFI+VG T+ +C+ERLI VTASE PE + SPAQKA++L+FS
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFS 523
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-D 316
RL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK TG +I+I+ +
Sbjct: 524 RLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVE 581
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTE---- 372
Q KCISEND+VVQI+GEF V++A++++T RLRD+ FS ++ + +S+S++ TE
Sbjct: 582 QNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYD 641
Query: 373 ------------------------------------------------TSPYSRLKDPAS 384
T PY R +DP
Sbjct: 642 RQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFP 701
Query: 385 FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ S SH+F + MDH SH L + PS +LW + RG SD G
Sbjct: 702 DRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAAP--RGLSDASGG 754
Query: 444 WSQGLSHHKGG-----LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQIS 498
S + H G L SG KSAIVTNTTVEI VP N + VYGE G NL +LRQIS
Sbjct: 755 LSSARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQIS 814
Query: 499 GAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
GA+VI+HEP LG++DRI+VISGTPD+TQAAQ+LL AFILTG
Sbjct: 815 GARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 855
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|28261403|gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 254/648 (39%), Positives = 348/648 (53%), Gaps = 130/648 (20%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHE------------TIRRPVDTIPH 48
M G+R E Q ++H+P+E QES+ R VE ++ T+ R D IPH
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 49 ETIH-RPLDTISHETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFA 107
+T+H R ++ + +R +EA D + R VEA Q+ L R +E+ Q+ LRR ++V
Sbjct: 292 DTLHLRRIEAVPQGALRMYIEADRQDVLRRHVEADRQDALRRHVEADRQDALRRRIDVVP 351
Query: 108 PESSHRSSEAL-------------SIETQHRLFGAV------------------------ 130
E+ + S+ L S ++ HR F V
Sbjct: 352 RETLYMPSDVLRGDCFLQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETM 411
Query: 131 SQEILPDLHVDILSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQE 185
+QE L D L+ R S L T P S+S++ + ++P E + Q+
Sbjct: 412 TQETLRGQSADYLAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQD 463
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V F+ILCS + G VIG GG ++R L SE GAFI+VG + +C+ERLI VTASE PE +
Sbjct: 464 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPECQS 523
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
SPAQKA++L+FSRL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK
Sbjct: 524 SPAQKAIMLIFSRLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRK 581
Query: 306 VTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
TG +I+I+ +Q KCISEND+VVQI+ EF V++A++++T RLRD+ FS ++ + +
Sbjct: 582 TTGAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMKNSLAK 641
Query: 365 STSSVLTE---------------------------------------------------- 372
S+S++ TE
Sbjct: 642 SSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVG 701
Query: 373 TSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTG 431
T PY R +DP + S SH+F + MDH SH L + PS +LW +
Sbjct: 702 TDPYIRPEDPFPDRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAA 756
Query: 432 VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNL 491
RG SD S GLS + G LGSG KSAIVTNTTVEI VP N + VYGE G NL
Sbjct: 757 P--RGLSDA----SGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNL 810
Query: 492 LRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
+LRQISGA+VI+HEP LG++DRI+VISGTPD+TQAAQ+LL AFILTG
Sbjct: 811 EQLRQISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTG 858
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|124359392|gb|ABN05856.1| KH, type 1 [Medicago truncatula]
Length = 564
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 164/254 (64%), Positives = 200/254 (78%), Gaps = 1/254 (0%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
AV E L DLHVD L QR S L+ PSSS SY + V LS E +RV++L+ + QQE++F
Sbjct: 72 AVPCETLTDLHVDHLLQRRSALSILPSSSNSYATGVHSLSAEVNRVSSLEPKAHQQEITF 131
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I+CSND++G VIGKGG IIRALQSE GA +SVG ++ EC++RLIT+TASE PESRYSPA
Sbjct: 132 KIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESRYSPA 191
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
QKA VLVFSR +E EKG+D N G V A+LVV+SNQVGCLLGKGG I+SEMRK TG
Sbjct: 192 QKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKATG 251
Query: 309 TSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTS 367
SIRI+ +D++ KC S+ND+VVQISGEFS V+DA+YN TGRLRDN F GTL +A TRS S
Sbjct: 252 ASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAGTRSLS 311
Query: 368 SVLTETSPYSRLKD 381
SV ++TSPY RL+D
Sbjct: 312 SVQSDTSPYGRLRD 325
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 209/369 (56%), Gaps = 38/369 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC---DERLITVTASEG 240
V+ +++ S+++VG ++GKGG I+ ++ GA I + T + +C +++++ ++
Sbjct: 221 VTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISG--- 277
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+S Q A+ RL + L + + L + + ++ G L
Sbjct: 278 ---EFSNVQDALYNATGRLRDNLFGGTLKSAGTRSL---SSVQSDTSPYGRLRDVPLGSQ 331
Query: 301 SEMRKVTGTSIRIISDQLLKCIS-END-------RVVQISGEFSKVKDAVYNVTGRLRDN 352
S +R T +R+ L+ S + D R V + G+ S D + GRLRD
Sbjct: 332 SSLRADTNAFVRLRDVPLVGQSSLQADTSPYVRLRDVSLGGQSSLQSDT--SPYGRLRDI 389
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS 412
G SS+ ++TSPY +L+D G S+V +SH S+ +QG+DH L
Sbjct: 390 PLGGQ---------SSLQSDTSPYGKLRD-IPLGGQSAVGISHSLSRHTFSQGIDHFSLG 439
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ D PSSP LWT VTG++ S + S G + KGGLEL SGSKSAIVTNTT+E
Sbjct: 440 RNYDRPSSPGLWTPPRVTGMN---SGSINEA-SWGSTSRKGGLELVSGSKSAIVTNTTIE 495
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
I+VPE+ + VYGENGSNL RLRQISGAKV++HEPR G++DR +V+SG+PDETQAAQSLL
Sbjct: 496 IVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAAQSLL 555
Query: 533 QAFILTGPS 541
QAFIL G S
Sbjct: 556 QAFILNGSS 564
>gi|357445989|ref|XP_003593272.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482320|gb|AES63523.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 766
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/254 (64%), Positives = 200/254 (78%), Gaps = 1/254 (0%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSF 188
AV E L DLHVD L QR S L+ PSSS SY + V LS E +RV++L+ + QQE++F
Sbjct: 274 AVPCETLTDLHVDHLLQRRSALSILPSSSNSYATGVHSLSAEVNRVSSLEPKAHQQEITF 333
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I+CSND++G VIGKGG IIRALQSE GA +SVG ++ EC++RLIT+TASE PESRYSPA
Sbjct: 334 KIICSNDRIGGVIGKGGNIIRALQSETGATVSVGPSVAECEDRLITITASESPESRYSPA 393
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
QKA VLVFSR +E EKG+D N G V A+LVV+SNQVGCLLGKGG I+SEMRK TG
Sbjct: 394 QKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEMRKATG 453
Query: 309 TSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTS 367
SIRI+ +D++ KC S+ND+VVQISGEFS V+DA+YN TGRLRDN F GTL +A TRS S
Sbjct: 454 ASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAGTRSLS 513
Query: 368 SVLTETSPYSRLKD 381
SV ++TSPY RL+D
Sbjct: 514 SVQSDTSPYGRLRD 527
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 209/369 (56%), Gaps = 38/369 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC---DERLITVTASEG 240
V+ +++ S+++VG ++GKGG I+ ++ GA I + T + +C +++++ ++
Sbjct: 423 VTAQLVVSSNQVGCLLGKGGVIVSEMRKATGASIRIVGTDKVSKCASDNDQVVQISG--- 479
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+S Q A+ RL + L + + L + + ++ G L
Sbjct: 480 ---EFSNVQDALYNATGRLRDNLFGGTLKSAGTRSL---SSVQSDTSPYGRLRDVPLGSQ 533
Query: 301 SEMRKVTGTSIRIISDQLLKCIS-END-------RVVQISGEFSKVKDAVYNVTGRLRDN 352
S +R T +R+ L+ S + D R V + G+ S D + GRLRD
Sbjct: 534 SSLRADTNAFVRLRDVPLVGQSSLQADTSPYVRLRDVSLGGQSSLQSDT--SPYGRLRDI 591
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS 412
G SS+ ++TSPY +L+D G S+V +SH S+ +QG+DH L
Sbjct: 592 PLGGQ---------SSLQSDTSPYGKLRD-IPLGGQSAVGISHSLSRHTFSQGIDHFSLG 641
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ D PSSP LWT VTG++ ++ S G + KGGLEL SGSKSAIVTNTT+E
Sbjct: 642 RNYDRPSSPGLWTPPRVTGMNSGSINEA----SWGSTSRKGGLELVSGSKSAIVTNTTIE 697
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
I+VPE+ + VYGENGSNL RLRQISGAKV++HEPR G++DR +V+SG+PDETQAAQSLL
Sbjct: 698 IVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPDETQAAQSLL 757
Query: 533 QAFILTGPS 541
QAFIL G S
Sbjct: 758 QAFILNGSS 766
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 18/185 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V+FR+LC++ ++G VIGK GT+I+ LQ GA I + + E +R+I V +
Sbjct: 48 VAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKV 107
Query: 239 -------EGPESRYSPAQKAVVLVFSRLIEGTSE-KGLDFSSNKGLLVNARLVVASNQVG 290
+G S AQ+A++ VF R++E +E +G++ V+ RLV S Q G
Sbjct: 108 MVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRT---VSCRLVADSAQAG 164
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GKGG ++ +++K TG I + D L CIS D V++I G S VK A+ V+ L+
Sbjct: 165 SVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQ 224
Query: 351 DNHFS 355
D H +
Sbjct: 225 DRHHA 229
>gi|42573788|ref|NP_974990.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010500|gb|AED97883.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 824
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 221/595 (37%), Positives = 308/595 (51%), Gaps = 118/595 (19%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISH 60
M G+R E Q ++H+P+E QES+ R VE ++ R + P T+ R D I H
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 61 ETIR-RSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEAL- 118
+T+ R +EAVP + +EA Q++L R +E+ Q+ LRR ++V E+ + S+ L
Sbjct: 292 DTLHLRRIEAVPQGALRMHIEADRQDVLRRHVEADRQDALRRRIDVVPQETLYMPSDVLR 351
Query: 119 ------------SIETQHRLFGAV------------------------SQEILPDLHVDI 142
S ++ HR F V +QE L D
Sbjct: 352 GDCFRQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQSADY 411
Query: 143 LSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKV 197
L+ R S L T P S+S++ + ++P E + Q+V F+ILCS +
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQDVVFKILCSTENA 463
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G VIG GG ++R L SE GAFI+VG T+ +C+ERLI VTASE PE + SPAQKA++L+FS
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFS 523
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-D 316
RL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK TG +I+I+ +
Sbjct: 524 RLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVE 581
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTE---- 372
Q KCISEND+VVQI+GEF V++A++++T RLRD+ FS ++ + +S+S++ TE
Sbjct: 582 QNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYD 641
Query: 373 ------------------------------------------------TSPYSRLKDPAS 384
T PY R +DP
Sbjct: 642 RQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFP 701
Query: 385 FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ S SH+F + MDH SH L + PS +LW + RG SD
Sbjct: 702 DRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAAP--RGLSDA--- 751
Query: 444 WSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQIS 498
S GLS + G LGSG KSAIVTNTTVEI VP N + VYGE G NL +LRQ+S
Sbjct: 752 -SGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQVS 805
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|9759415|dbj|BAB09870.1| unnamed protein product [Arabidopsis thaliana]
Length = 833
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 219/600 (36%), Positives = 306/600 (51%), Gaps = 119/600 (19%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISH 60
M G+R E Q ++H+P+E QES+ R VE ++ R + P T+ R D I H
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 61 ETIR-RSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEAL- 118
+T+ R +EAVP + +EA Q++L R +E+ Q+ LRR ++V E+ + S+ L
Sbjct: 292 DTLHLRRIEAVPQGALRMHIEADRQDVLRRHVEADRQDALRRRIDVVPQETLYMPSDVLR 351
Query: 119 ------------SIETQHRLFGAV------------------------SQEILPDLHVDI 142
S ++ HR F V +QE L D
Sbjct: 352 GDCFRQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETMTQETLRGQSADY 411
Query: 143 LSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKV 197
L+ R S L T P S+S++ + ++P E + Q+V F+ILCS +
Sbjct: 412 LAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQDVVFKILCSTENA 463
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
G VIG GG ++R L SE GAFI+VG T+ +C+ERLI VTASE PE + SPAQKA++L+FS
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSPAQKAIMLIFS 523
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-D 316
RL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK TG +I+I+ +
Sbjct: 524 RLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVE 581
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTE---- 372
Q KCISEND+VVQI+GEF V++A++++T RLRD+ FS ++ + +S+S++ TE
Sbjct: 582 QNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYD 641
Query: 373 ------------------------------------------------TSPYSRLKDPAS 384
T PY R +DP
Sbjct: 642 RQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFP 701
Query: 385 FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ S SH+F + MDH SH L + PS +LW + RG SD G
Sbjct: 702 DRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAAP--RGLSDASGG 754
Query: 444 WSQGLSHHKGG-----LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQIS 498
S + H G L SG KSAIVTNTTVEI VP N + VYGE G NL +LRQ+S
Sbjct: 755 LSSARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQVS 814
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|28261405|gb|AAO37829.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 836
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 221/607 (36%), Positives = 309/607 (50%), Gaps = 130/607 (21%)
Query: 1 MTGSRFNEANLQETIHKPLEVAFQESICRPVETILHE------------TIRRPVDTIPH 48
M G+R E Q ++H+P+E QES+ R VE ++ T+ R D IPH
Sbjct: 232 MVGNRPLEKEFQASLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFPRGTVARANDVIPH 291
Query: 49 ETIH-RPLDTISHETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFA 107
+T+H R ++ + +R +EA D + R VEA Q+ L R +E+ Q+ LRR ++V
Sbjct: 292 DTLHLRRIEAVPQGALRMYIEADRQDVLRRHVEADRQDALRRHVEADRQDALRRRIDVVP 351
Query: 108 PESSHRSSEAL-------------SIETQHRLFGAV------------------------ 130
E+ + S+ L S ++ HR F V
Sbjct: 352 RETLYMPSDVLRGDCFLQHRERDDSHDSLHRPFEMVPRDAMGMPFESFPRDAYGRPIETM 411
Query: 131 SQEILPDLHVDILSQRNSVLTTAP-----SSSISYVSAVRPLSLESDRVATLDARTQQQE 185
+QE L D L+ R S L T P S+S++ + ++P E + Q+
Sbjct: 412 TQETLRGQSADYLAHRYSTLDTHPHSFTTSASMANTATMKPPPSEVE--------VGNQD 463
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V F+ILCS + G VIG GG ++R L SE GAFI+VG + +C+ERLI VTASE PE +
Sbjct: 464 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNALDDCEERLIAVTASENPECQS 523
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
SPAQKA++L+FSRL E + K LD + ARLVV ++Q+GC+LGKGG I+SEMRK
Sbjct: 524 SPAQKAIMLIFSRLFELATNKILDNGPRSS--ITARLVVPTSQIGCVLGKGGVIVSEMRK 581
Query: 306 VTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
TG +I+I+ +Q KCISEND+VVQI+ EF V++A++++T RLRD+ FS ++ + +
Sbjct: 582 TTGAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMKNSLAK 641
Query: 365 STSSVLTE---------------------------------------------------- 372
S+S++ TE
Sbjct: 642 SSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVG 701
Query: 373 TSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTG 431
T PY R +DP + S SH+F + MDH SH L + PS +LW +
Sbjct: 702 TDPYIRPEDPFPDRFNPSAGYSHNFGR---RFTMDHSDNSHHLTEAPS--RLWASPPPAA 756
Query: 432 VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNL 491
RG SD S GLS + G LGSG KSAIVTNTTVEI VP N + VYGE G NL
Sbjct: 757 P--RGLSDA----SGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNL 810
Query: 492 LRLRQIS 498
+LRQ+S
Sbjct: 811 EQLRQVS 817
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 31/186 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY- 245
+FR+LC VGAVIGK G +I+ LQ GA I V +R+IT+ A +SR
Sbjct: 48 AFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVK 107
Query: 246 --------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVA 285
S AQ A++ VF L +E D V RL+
Sbjct: 108 LGANNNGNAEGEKKEEEVEVSKAQGALIKVFELL---AAEADSD-------TVVCRLLTE 157
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+ G ++GKGG ++ +RK TG I I + L C +D +V++ G VK A+ ++
Sbjct: 158 SSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSI 217
Query: 346 TGRLRD 351
+ L++
Sbjct: 218 SRCLQN 223
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V + ++ P + +G+V G++G+ + +L+Q +GAK+ V EP GS DR++ I D
Sbjct: 44 VGHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQAD 101
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/235 (67%), Positives = 179/235 (76%), Gaps = 3/235 (1%)
Query: 150 LTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIR 209
L T P SSI+Y S V PLSLESDRV T D QQ V FRILC+ D++G VIGKGG I+R
Sbjct: 265 LPTIPKSSINYASRVHPLSLESDRVVTPDTNIPQQLV-FRILCTTDRIGGVIGKGGNIVR 323
Query: 210 ALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLD 269
ALQ+E GA ISVG T+ ECDERLITVTASE PESRYS AQK +VLVFSR +E EKGLD
Sbjct: 324 ALQNETGAAISVGPTVSECDERLITVTASENPESRYSAAQKTIVLVFSRAVESGIEKGLD 383
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQL-LKCISENDR 327
S++G V ARLVV+ +QVGCLLGKGGTIISEMRK T TSIRII DQ KC+ E D
Sbjct: 384 PGSSRGSPVTARLVVSPSQVGCLLGKGGTIISEMRKATSTSIRIIVGDQRNPKCVPETDH 443
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDP 382
VV+ISG+F VKDA+Y+VTGRLRDN FSG L+T RS SSVL E SPY +L DP
Sbjct: 444 VVEISGDFVNVKDAIYHVTGRLRDNLFSGMLSTPGARSNSSVLAEISPYVKLMDP 498
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 114/163 (69%), Positives = 127/163 (77%), Gaps = 5/163 (3%)
Query: 380 KDPASFGVHSSVAVSHDFS-QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSS 438
+D A + + + SH+ S Q +TQ MDHLGLSHSLD P SP+LW +QT+ V+ RG S
Sbjct: 564 RDSAPYIMQPTPGNSHNLSRQTVITQNMDHLGLSHSLDRPPSPRLWASQTIPRVNPRGIS 623
Query: 439 DVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQIS 498
DV R L K GLELGSG KSA VTNTTVEI+VPEN GSVYGENGSNL RLRQIS
Sbjct: 624 DVSRR----LPSLKAGLELGSGGKSAFVTNTTVEIVVPENAFGSVYGENGSNLARLRQIS 679
Query: 499 GAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
GAKVIVHEPRLG++DRIVVISGTPDETQAAQSLLQAFILTG S
Sbjct: 680 GAKVIVHEPRLGTSDRIVVISGTPDETQAAQSLLQAFILTGQS 722
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 122/249 (48%), Gaps = 26/249 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV----TASEGP 241
VSFR+LC ++G VIGK G II+ LQ + GA + + + +R+ITV T S
Sbjct: 36 VSFRLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRIEDAPSDSPDRVITVIGPITQSAVV 95
Query: 242 ESR------YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
SR S Q+A+V VF R++E +E S +V+ R++ + VG ++GK
Sbjct: 96 FSRIESAVEVSKGQEALVRVFERILEVAAES----DSVADGVVSCRMLAEVSSVGAVIGK 151
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GG ++ ++RK G I+++ D+L C + N+ +++I G+ S VK + V+ L+D
Sbjct: 152 GGKVVEKIRKDCGCRIKVLVDKLPDCAASNEEMIEIEGDVSAVKKGLVAVSRCLQDCQ-- 209
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL--SH 413
+TR T+S E L D V + H P + Q L H
Sbjct: 210 ---PVDKTRVTNSKPAEAVSRVSLSD-----VRVEIHPRHSAVLPTIAQNSSVLPTIPQH 261
Query: 414 SLDCPSSPK 422
SL P+ PK
Sbjct: 262 SLGLPTIPK 270
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/266 (61%), Positives = 193/266 (72%), Gaps = 12/266 (4%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTT------AP----SSSISYVSAVRPLSLESDRVATLD 178
AVS+ P++ V+IL Q ++V T AP +SSI Y S SLES+RV+TLD
Sbjct: 246 AVSRVSFPEVGVEILPQHSAVRPTIAQHSVAPPTVTNSSIDYASGTHLFSLESERVSTLD 305
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
T QQ+V FRILC+ND+VG VIGKGG I+ ALQ+E GA IS+G + CDERLITVTAS
Sbjct: 306 TSTPQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTAS 365
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E PESRYS AQK VVLVFSR++E EKGLD S++G V+ RLVV+ NQVGCLLGKGGT
Sbjct: 366 ENPESRYSAAQKTVVLVFSRVVESVIEKGLDPGSSEGSPVSVRLVVSPNQVGCLLGKGGT 425
Query: 299 IISEMRKVTGTSIRIIS-DQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
IISEMRK T TSIRII DQ KC+ END VV+I G+F VKD++Y++TGRLRDN FS
Sbjct: 426 IISEMRKATSTSIRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRDNLFSS 485
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDP 382
L T RS+SSVL ETSPY R DP
Sbjct: 486 ILGTPGARSSSSVLAETSPYVRSMDP 511
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/162 (65%), Positives = 124/162 (76%), Gaps = 7/162 (4%)
Query: 380 KDPASFGVHSSVAVSHDFS-QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSS 438
+D ASF + V +SH+ + Q +TQ MDHLG S SLD SP+LW +QT+ GV+ RG S
Sbjct: 589 RDSASF-LQPMVGISHNLNRQTVITQSMDHLGFSRSLDHSPSPRLWGSQTIPGVNPRGIS 647
Query: 439 DVGRGWSQGLSHHKGGLE-LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQI 497
D+ S GL K GL+ L SG KSA VTNTTVEI++PE+ GSVYGENGSNL RLRQ
Sbjct: 648 DL----SGGLPSFKAGLDDLVSGGKSAFVTNTTVEIVIPEHTFGSVYGENGSNLARLRQF 703
Query: 498 SGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
SGAKVIVHEPRLG++DRI+VISGTPDETQAAQSLL AFILTG
Sbjct: 704 SGAKVIVHEPRLGTSDRIIVISGTPDETQAAQSLLHAFILTG 745
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/176 (35%), Positives = 99/176 (56%), Gaps = 14/176 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE------ 239
V FR+LC + ++G +IGKGG II+ LQ + GA I + E +R+IT+ S
Sbjct: 58 VLFRLLCHDSRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLESPDRVITIVGSVTQSSVV 117
Query: 240 ----GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
G S Q+A+V VF R++E +E S G LV+ RL+ + VG ++GK
Sbjct: 118 FSGIGSAIEVSKGQEALVRVFERILEVAAES----DSVAGGLVSCRLLAEISSVGAVIGK 173
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
GG + ++RK G ++++ D+L C S N+ +++I G+ S VK + V+ RL+D
Sbjct: 174 GGKTVEKIRKDCGCKVKVLIDKLPACASSNEEMIEIEGDVSAVKKGLVAVSHRLQD 229
>gi|147863214|emb|CAN78372.1| hypothetical protein VITISV_006585 [Vitis vinifera]
Length = 807
Score = 269 bits (687), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 237/396 (59%), Gaps = 55/396 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG-- 240
++EV F++LC +KVG++IGKGG+IIR LQSE GA I + P+ DER++ ++A E
Sbjct: 421 EEEVVFKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKIADAAPDSDERVVVISAREACT 480
Query: 241 ---PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
E ++SPAQ AV+ V R+ E + F G V ARL+V S Q+GCLLGKGG
Sbjct: 481 LTNXEQKHSPAQDAVIRVHCRIAE------IGF--EPGAAVVARLLVHSQQIGCLLGKGG 532
Query: 298 TIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-- 354
IISEMR+ TG SIRI + +Q+ KC S+ND +VQ+ G V+DA++ +T R+R+ F
Sbjct: 533 IIISEMRRATGASIRIFAKEQVPKCGSQNDELVQVIGSLQSVQDALFCITSRIRETIFPL 592
Query: 355 SGTLNTARTRSTSSVLTETSP--YSRLKDPASFGVHSS-VAVSH---------------- 395
+++ S E P + DPAS G +SS V V H
Sbjct: 593 KPSISNVNGPPYMSSFPEIPPPMFRPRHDPASPGHYSSPVGVPHGIDRSAVPGHPLDHQS 652
Query: 396 ------------DFSQPPLTQGMDHLGLSHSLDCPSS-PKLWTAQTVTGVHLRGSSDVGR 442
+ + P G D G D PSS P++WT Q V+G +LRG+ DVG
Sbjct: 653 SFSHGVDRIGPSNLDRAPYPYGGDRPGHGPPFDRPSSSPRMWTPQGVSG-NLRGT-DVGS 710
Query: 443 GWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV 502
G GL+ G GSGS++ +T TTVE+ VP+ ++ VYGEN SNL ++RQISGA+V
Sbjct: 711 G---GLASRSG--PPGSGSQAPNITXTTVEVAVPQALLSHVYGENNSNLNQIRQISGARV 765
Query: 503 IVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
++ +PR GS++ +VV+SGTPD+T+AAQSL+QAFIL+
Sbjct: 766 VIQDPRTGSSEGVVVVSGTPDQTRAAQSLVQAFILS 801
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 36/188 (19%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA- 237
A + +V FRILC K G VIGKGG IIR + + GA I + ++ CDER+I + A
Sbjct: 49 AXAAKPQVLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVAD 108
Query: 238 ----------------SEGPES----------------RYSPAQKAVVLVFSRL--IEGT 263
++G ES SPAQ+A+V VF R+ ++
Sbjct: 109 AVKSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEE 168
Query: 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCI 322
E+ + V RL+ SNQVGC+LG+GG I+ ++R+ +G IR++ D + C
Sbjct: 169 REEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACA 228
Query: 323 SENDRVVQ 330
S D ++Q
Sbjct: 229 SPGDELIQ 236
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 168/391 (42%), Positives = 236/391 (60%), Gaps = 51/391 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
++EV F++LC +KVG++IGKGG+IIR LQSE GA I + P+ DER++ ++A E E
Sbjct: 325 EEEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKIADAAPDSDERVVVISARENLE 384
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
++SPAQ AV+ V R+ E + F G V ARL+V S Q+GCLLGKGG IISE
Sbjct: 385 QKHSPAQDAVIRVHCRIAE------IGF--EPGAAVVARLLVHSQQIGCLLGKGGIIISE 436
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF--SGTLN 359
MR+ TG SIRI + +Q+ KC S+ND +VQ+ G V+DA++ +T R+R+ F +++
Sbjct: 437 MRRATGASIRIFAKEQVPKCGSQNDELVQVIGSLQSVQDALFRITSRIRETIFPLKPSIS 496
Query: 360 TARTRSTSSVLTETSP--YSRLKDPASFGVHSS-VAVSH--------------------- 395
S E P + DPAS G +SS V V H
Sbjct: 497 NVNGPPYMSSFPEIPPPMFRPRHDPASPGHYSSPVGVPHGIDRSAVPGHPLDHQSSFSHG 556
Query: 396 -------DFSQPPLTQGMDHLGLSHSLDCPSS-PKLWTAQTVTGVHLRGSSDVGRGWSQG 447
+ + P G D G D PSS P++WT Q V+G +LRG+ DVG G
Sbjct: 557 VDRIGPSNLDRAPYPYGGDRPGHGPPFDRPSSSPRMWT-QGVSG-NLRGT-DVGSGS--- 610
Query: 448 LSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP 507
L+ G GSGS++ +T TTVE+ VP+ ++ VYGEN SNL ++RQISGA+V++ +P
Sbjct: 611 LASRNG--PPGSGSQAPNITTTTVEVAVPQALLSHVYGENNSNLNQIRQISGARVVIQDP 668
Query: 508 RLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
R GS++ +VV+SGTPD+T+AAQSL+QAFIL+
Sbjct: 669 RTGSSEGVVVVSGTPDQTRAAQSLVQAFILS 699
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 101/377 (26%), Positives = 160/377 (42%), Gaps = 83/377 (22%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA- 237
A + +V FRILC K G VIGKGG IIR + + GA I + ++ CDER+I + A
Sbjct: 49 AGAAKPQVLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVAD 108
Query: 238 ----------------SEGPES----------------RYSPAQKAVVLVFSRL--IEGT 263
++G ES SPAQ+A+V VF R+ ++
Sbjct: 109 AVKSKREASAICGAEANDGEESANLSNSSPNPVAVDDDESSPAQQALVRVFERILKVDEE 168
Query: 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCI 322
E+ + V RL+ SNQVGC+LG+GG I+ ++R+ +G IR++ D + C
Sbjct: 169 REEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACA 228
Query: 323 SENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDP 382
S D ++QI+G F V+ A+ V+ L+DN + N+A + T +L
Sbjct: 229 SPGDELIQITGTFPAVRKALLLVSSCLQDNPRADATNSAAAKPTGGML------------ 276
Query: 383 ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGR 442
H P G SL P
Sbjct: 277 ------------HGNGMPGQLDSFPQRGYGSSLHGPDY---------------------- 302
Query: 443 GWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV 502
S+G S G +G+ + + +++ +GS+ G+ GS + L+ +GA +
Sbjct: 303 -HSRGYSSMPGPENIGANHRMVLEEEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASI 361
Query: 503 IVHEPRLGSTDRIVVIS 519
+ + S +R+VVIS
Sbjct: 362 KIADAAPDSDERVVVIS 378
>gi|255583245|ref|XP_002532387.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223527911|gb|EEF29999.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 688
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 186/464 (40%), Positives = 248/464 (53%), Gaps = 81/464 (17%)
Query: 137 DLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDK 196
D H + +S+L P S S S PLS ++ DA + EVSFR+LCSN
Sbjct: 240 DPHAEFFPHLSSLL--PPLSGNSGTS--HPLSSDAGEDPNQDAEAVRHEVSFRLLCSNGA 295
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
G++IGK GTI+R LQ+E GA I A M ER++T++A E ES +SPAQ A +LVF
Sbjct: 296 AGSIIGKKGTIVRTLQNETGASIMFAAPMSMSGERVVTISALENLESWHSPAQNAAILVF 355
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT--IISEMRKVTGTSIRII 314
+R +E EKG +G V ARL+VAS+ V CL+ KGGT I SEM +V+G IRI+
Sbjct: 356 ARSVEHDIEKGHPSGLIEGATVTARLLVASDAVCCLIEKGGTGNIDSEMIEVSGADIRIL 415
Query: 315 S-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGR-----------------LRDNHFSG 356
+Q++ C SE+D V++I+GE+ V++A++ VTG+ + FS
Sbjct: 416 DGEQIMACASEDDVVIEITGEYKNVQNALFMVTGKLRGLSPDSDQETSLTRAMNQLGFSS 475
Query: 357 TLNTA---RTRSTSSVLTE--TSPYSRLKDPASFGVHSSVAVSHDFSQPP---------- 401
+ N A R +S E T+ ++ +FG S + S F P
Sbjct: 476 SFNNASLPRLQSAQKFQREHTTAIKNQENSLQAFGGGSGLERSLHFLLPKEVLNEVGERS 535
Query: 402 ----------------------------LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVH 433
LT+G++ LS+++D PS P L Q G
Sbjct: 536 SSGGVRQTTSSGSHSSSGLAPGPIQDTSLTRGINQPQLSNNIDFPS-PALHMPQQTAG-- 592
Query: 434 LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLR 493
RG + GRG LE S +S IV NT +E++VPE+ IGSVYGE+GSNL R
Sbjct: 593 -RGKT-FGRGAE---------LESYSRKRSPIVVNTIIELVVPEDTIGSVYGEDGSNLAR 641
Query: 494 LRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
LRQISGAKV V EP G + RIVVISGTPD+T AAQSLLQAFIL
Sbjct: 642 LRQISGAKVEVREPSSGKSGRIVVISGTPDQTNAAQSLLQAFIL 685
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 149/365 (40%), Gaps = 77/365 (21%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP 241
Q +V+FR++C +G +IG+ G+ I ++ + G + + D R+IT+ P
Sbjct: 21 QPGQVAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQGSDHRVITIVGPASP 80
Query: 242 ESR---------------------YSPAQKAVVLVFSRL--IEGTSEK--GLDFSSNKGL 276
R S AQ+AV+ V R+ ++G E+ G+D +SN
Sbjct: 81 GKRITLNSTTCHDHNGAEEEEKELVSVAQEAVIRVCERMWEVDGQRERRGGVDNNSNNSG 140
Query: 277 LVNAR--LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
L L+ + Q+G ++GKGG + MR+ +G IR + C S++D+++QI+G
Sbjct: 141 LGEGYCGLLADTTQIGAVVGKGGKNVLRMRRESGADIRFLPPP--HCASKDDQLIQITGS 198
Query: 335 FSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS 394
VK A+ VT L D PY KDP + S
Sbjct: 199 ILAVKKALVAVTDCLHD---------------------CPPYE--KDPTLL-MRPLERAS 234
Query: 395 HDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG 454
H S P + HL SL P S T+ + SSD G +Q
Sbjct: 235 HLASSDPHAEFFPHLS---SLLPPLSGNSGTSHPL-------SSDAGEDPNQ-------- 276
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
A+ + ++ GS+ G+ G+ + L+ +GA ++ P S +R
Sbjct: 277 ------DAEAVRHEVSFRLLCSNGAAGSIIGKKGTIVRTLQNETGASIMFAAPMSMSGER 330
Query: 515 IVVIS 519
+V IS
Sbjct: 331 VVTIS 335
>gi|356522258|ref|XP_003529764.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 559
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/381 (36%), Positives = 217/381 (56%), Gaps = 40/381 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V F++LC ++KVG++IGKGG+++RALQ+E GA I + P+ DER++ ++A E E
Sbjct: 191 EEDVVFKLLCHHEKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDERVVVISARETSE 250
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
++SPAQ+AV+ V RL E + F + ++ A+L+V S QVGCLLGKGG +ISE
Sbjct: 251 QKHSPAQEAVIRVHCRLTE------IGFEPSAAVV--AKLLVRSPQVGCLLGKGGLVISE 302
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-------- 354
MR+VTG SIRI S + +K IS+N+ VVQ+ G V+DA++++T R+R+ F
Sbjct: 303 MRRVTGASIRIFSKEQIKYISQNEEVVQVIGSLQSVQDALFHITSRIRETIFPIRTPPNF 362
Query: 355 --------SGTLNTARTRSTSSVLTE--------TSPYSRLKDPASFGVHSSVAVSHDFS 398
+ R + +++ P+ P H A H
Sbjct: 363 SAPPHLPPFPEMPPPLFRPRNHLMSSGHPPPPQVGHPHDHSTVPPMPVDHQQHAFVHGMG 422
Query: 399 QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG 458
+ P MD + + P+SP+ W V + G++D S+ + + G L
Sbjct: 423 RGP--PNMDRVPYPRGYEGPNSPRSWNPLAVNRGNSGGTADTSSLASRNENLGENGNPLQ 480
Query: 459 SGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
+ + N T+EI +P + VYGEN SNL ++RQ SGA V+VH+P+ G+T+ +V++
Sbjct: 481 NPN------NLTIEITIPHMYLTHVYGENNSNLTQIRQTSGANVVVHDPKPGATEGLVIV 534
Query: 519 SGTPDETQAAQSLLQAFILTG 539
SG PD+T AAQSL+QAFIL G
Sbjct: 535 SGAPDQTHAAQSLIQAFILCG 555
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 26/167 (15%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FRI+C K V GG GA I V + +ER++ + E S
Sbjct: 21 FRIVCPAAKTEDVATIGGD---------GAKILV-EDLVSAEERVVVIVGEE------SA 64
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
AQ A+V VF R ++ K V+ +LV S QVGC+LG+GG I+ ++R+ T
Sbjct: 65 AQVALVRVFERTVD---------EETKNSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDT 115
Query: 308 GTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G IR++ DQ + +QI+G F VK AV +V+ DN+
Sbjct: 116 GAHIRVLPKDQPPLPPPPGEEFIQITGNFGAVKKAVLSVSACFYDNN 162
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 111/244 (45%), Gaps = 48/244 (19%)
Query: 141 DILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAV 200
D++S V+ S + V+ VR T+D T+ VS +++ + +VG V
Sbjct: 47 DLVSAEERVVVIVGEESAAQVALVRVFE------RTVDEETKNSTVSCKLVAPSYQVGCV 100
Query: 201 IGKGGTIIRALQSEAGAFISVGATMPE--------CDERLITVTASEGPESRYSPAQKAV 252
+G+GG I+ ++ + GA I V +P+ E I +T + + +KAV
Sbjct: 101 LGRGGKIVEKIRQDTGAHIRV---LPKDQPPLPPPPGEEFIQITGN------FGAVKKAV 151
Query: 253 VLVFSRLIEGTSE--KGLD------------FSSNKGLL---VNARLVVASNQVGCLLGK 295
+ V + + S K LD SS++ L V +L+ +VG L+GK
Sbjct: 152 LSVSACFYDNNSGAFKPLDHHSRGCYSESAGHSSHRMFLEEDVVFKLLCHHEKVGSLIGK 211
Query: 296 GGTIISEMRKVTGTSIRII-----SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
GG+++ ++ TG SI+I+ SD+ + IS + Q + S ++AV V RL
Sbjct: 212 GGSVVRALQNETGASIQIVEAGPDSDERVVVISARETSEQ---KHSPAQEAVIRVHCRLT 268
Query: 351 DNHF 354
+ F
Sbjct: 269 EIGF 272
>gi|356496890|ref|XP_003517298.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 602
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 226/405 (55%), Gaps = 46/405 (11%)
Query: 137 DLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDK 196
D + ++ NS+LT+ SI + S+ + D++ + EV FR+LCSN+
Sbjct: 239 DPNAELFPHLNSLLTSMEGLSI------YERTTNSNETSNRDSKGAEHEVVFRLLCSNNV 292
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
G+VIGK G I+RAL+S+ GA I A + E ER++T++A E ES SPAQ AV+LVF
Sbjct: 293 AGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERIVTISAVESLESCNSPAQDAVILVF 352
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-S 315
+R+IE KG S+ V ARL+VA++ V C G G +ISE+R+VTG I+I+
Sbjct: 353 ARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNCFSGNEGQVISELREVTGADIQILHG 412
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSP 375
+ + S+ D VVQI+GE+ V++A+Y +T R+RDN S + V+ E P
Sbjct: 413 ESVPNGASDEDVVVQITGEYRCVQNALYKITSRIRDN-----------LSPNEVVAEARP 461
Query: 376 YSRLKDPASFGVHSSVAVSHD-FSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHL 434
S K V+ D P +G PS L GVH
Sbjct: 462 KSNWK------------VNKDPIKGKPFARGKSAF--------PSGRFLPRN---AGVHA 498
Query: 435 RGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRL 494
G LS + LE G G+ A VTNTTVEIIV E+V GSVYGE+G NL R+
Sbjct: 499 ETILQNGE-LHTDLSEN---LERGRGNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRI 554
Query: 495 RQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
RQISGA V V++P +G++ VVISGTPD+T AAQSLLQAFI TG
Sbjct: 555 RQISGAIVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFIQTG 599
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 100/177 (56%), Gaps = 12/177 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
+++FR++C VG +IG G+I+ L+ E G I ++ ++R+I V S
Sbjct: 40 QIAFRLVCHASTVGGLIGSSGSIVSQLRRETGCKIHCEDSLSSAEDRVILVIGSLSPRKG 99
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+G E S AQ+AVV VF R+ + +EKG++ + V ++L+ ++Q+G ++G
Sbjct: 100 LLLGDGGEVEVSSAQEAVVRVFERVWDLEAEKGVNSNRAVNGEVFSKLLAHTSQIGAVVG 159
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
KGG I+ +R TG IR+ +C ++++ +VQI+G VK A+ +V+ L+D
Sbjct: 160 KGGKNITAIRNNTGAKIRVFPPP--QCATKDEELVQITGGILAVKKALISVSHCLQD 214
>gi|224067136|ref|XP_002302373.1| predicted protein [Populus trichocarpa]
gi|222844099|gb|EEE81646.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/378 (37%), Positives = 208/378 (55%), Gaps = 51/378 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++FR+LC N++VG VIGKGGTII+ L+ E G I V + + ++R+I ++ P+ R
Sbjct: 324 LTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLAHPDDRI 383
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S Q AV+ V +R+ S NK + ARL+V+SNQ+GCLLGKGG I+SEMRK
Sbjct: 384 SAPQDAVIRVQTRIAMAIS--------NKEKAIIARLLVSSNQIGCLLGKGGAIMSEMRK 435
Query: 306 VTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+G IRI+ DQ+ C SE++ VVQI+GEF VK+A+ +T RLR + F +
Sbjct: 436 SSGAYIRILGKDQIPNCASESEGVVQINGEFEVVKEALLQITTRLRHHFFQNLFPSMDHL 495
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM-------------DHLGL 411
S + L + P+ P G H F P GM DH
Sbjct: 496 SNPAFLDQVPPF-----PPYMGRKELSPPFHSF---PNFDGMVGAPPHVSFPPHDDHPPF 547
Query: 412 SHSLDCPSSP------KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE-----LGSG 460
H++ P P K W Q V G GL G + G
Sbjct: 548 MHNIHRPGMPPHIAERKPWGPQGF----------VEGGGPMGLPDFAGPPQRRISGFGGV 597
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
S AI+T+TT+E+IVP ++ +YGE+G+ L ++RQIS AK+ ++EP+ G+++ +++ISG
Sbjct: 598 SHPAIITSTTIEVIVPRTIVPVIYGEDGACLKQIRQISDAKITINEPKPGASETVIIISG 657
Query: 521 TPDETQAAQSLLQAFILT 538
TP++T AAQSL+QAF+++
Sbjct: 658 TPEQTHAAQSLIQAFVMS 675
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 103/214 (48%), Gaps = 47/214 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE------ 239
V FRILC K+G V G+GG +I ++ E GA + V +P CDE++I +T S+
Sbjct: 45 VVFRILCPAPKIGTVTGEGGAVISQIRQETGAKVIVEENIPGCDEQIIVITGSDEKTEVS 104
Query: 240 ---------------------------------------GPESRYSPAQKAVVLVFSRLI 260
G S QKA++LV ++
Sbjct: 105 IEQSKKDGDEEANVAEESDNKNDGNEKEEEKEGVPVEDSGTVKETSSMQKALLLVSGKMF 164
Query: 261 EGTS-EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQL 318
E G D +NK RL+V S+QVGCLLGKGG++I +M +G IRI D+L
Sbjct: 165 EADPVTDGGDEENNKPSTFILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRISPRDRL 224
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
C S +D +V+I+GE V+ A+ +V+ +L +N
Sbjct: 225 PICSSVSDELVEITGEIDAVRKALQSVSKQLLEN 258
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
I+ P IG+V GE G+ + ++RQ +GAKVIV E G ++I+VI+G+ ++T+ +
Sbjct: 49 ILCPAPKIGTVTGEGGAVISQIRQETGAKVIVEENIPGCDEQIIVITGSDEKTEVS 104
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 214/391 (54%), Gaps = 49/391 (12%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C N+ VG +IGKGG IRALQS+ GA + V + + DER+I ++A E E
Sbjct: 250 EQEIVFRMICLNEMVGGIIGKGGATIRALQSDTGASVKVIDAVADSDERVIVISARENSE 309
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AV+ V+SR+ SE +D SS V ARL+V S +GCLLGKGG+II+E
Sbjct: 310 MMHSPAQDAVLRVYSRI----SEASMDKSS----AVPARLLVPSQHIGCLLGKGGSIIAE 361
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR VTG SIRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD + +
Sbjct: 362 MRNVTGASIRIFGNEQIPRCAQRNDELVQVTGNFQSIQDALLHITGRIRDVIIPPKPHPS 421
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS----HDF-------------SQPP--- 401
S T + +DPA H S + H F +PP
Sbjct: 422 GGMSPYPPAGSTPHHPSRQDPAP--PHHSGGMPPYPMHPFRPNHPMGPFDVADHRPPGQH 479
Query: 402 LTQGMDHLG---LSHSLDCPS----------SPKLWTAQTVTGVHLRGSSDVGRGWSQGL 448
M+H+G + +S C SP+ W + T R D G +
Sbjct: 480 PAHPMEHMGADRIPYSYGCEQGGPRPFLEQPSPRTWAPEAQTADAPRSIPDKG----LAM 535
Query: 449 SHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR 508
KG + GS ++ A T+TT E+++P IG + G NGS+L +++ISGA + VH+P+
Sbjct: 536 DSRKGSV-AGSENQVATPTSTTTEVVIPCKYIGFICGTNGSDLAEIQKISGAAITVHDPK 594
Query: 509 LGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
G TD V + G P++T+ AQSL+ AFI G
Sbjct: 595 PGDTDASVFVCGDPEQTKKAQSLIHAFIFCG 625
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 26/152 (17%)
Query: 226 PECDERLITVTASEGPESRYSPAQKAVVLVFSRLI----------EGTSEKGLDFSSNKG 275
P DE ++ V+ + P A V V+ R++ EG EK +
Sbjct: 64 PVGDEVVLVVSGPDAP--------AAAVRVWERVVGHRVGGDDAGEGEEEKEVTG----- 110
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISG 333
+V R++ A QVGC+LGKGG + MR+ +G IR+ DQ+ C + D ++ ISG
Sbjct: 111 -VVGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKDQVPPCALQGDELIHISG 169
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
FS + A+ V+ L+DN T N + RS
Sbjct: 170 SFSAARKALLLVSTCLQDNPRLETSNFSTGRS 201
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 96/244 (39%), Gaps = 77/244 (31%)
Query: 173 RVATLDARTQQQE------VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GA 223
RV DA ++E V R+L + +VG V+GKGG + ++ E+GA I V
Sbjct: 93 RVGGDDAGEGEEEKEVTGVVGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKD 152
Query: 224 TMPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT----------------- 263
+P C + LI ++ S +S A+KA++LV + L +
Sbjct: 153 QVPPCALQGDELIHISGS------FSAARKALLLVSTCLQDNPRLETSNFSTGRSFGPPG 206
Query: 264 ----SEKGLDFSSNKGLL----------------------------VNARLVVASNQVGC 291
G+D S + L + R++ + VG
Sbjct: 207 SGVGCPPGVDSHSQRSYLPPHIPDYHARNFSSNVAAPGPRFFIEQEIVFRMICLNEMVGG 266
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE------FSKVKDAVYNV 345
++GKGG I ++ TG S+++I ++RV+ IS S +DAV V
Sbjct: 267 IIGKGGATIRALQSDTGASVKVID----AVADSDERVIVISARENSEMMHSPAQDAVLRV 322
Query: 346 TGRL 349
R+
Sbjct: 323 YSRI 326
>gi|356526304|ref|XP_003531758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Glycine
max]
Length = 565
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/379 (37%), Positives = 213/379 (56%), Gaps = 36/379 (9%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
++EV F++LC +DKVG++IGKGG+++RALQ+E GA I + P+ DER++ ++A E E
Sbjct: 197 EEEVVFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIVEAGPDSDERVVVISAQETSE 256
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
++SPAQ+AV+ V RL E + F + ++ A+L+V S QVGCLLGKGG +ISE
Sbjct: 257 QKHSPAQEAVIRVHCRLTE------IGFEPSAAVV--AKLLVRSPQVGCLLGKGGLVISE 308
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF------SG 356
MR+ TG SIRI S + +K IS+N+ VVQ+ G V+DA++++T R+R+ F +
Sbjct: 309 MRRATGASIRIFSKEQIKYISQNEEVVQVIGSLQSVQDALFHITNRIRETIFPIRTPPNF 368
Query: 357 TLNTARTRSTSSVLTETSPYSRLKD-----PASFG---VHSSV-AVSHDFSQPPLTQG-- 405
+ P + L P G HS+V + D Q G
Sbjct: 369 SAPPHFPPFPEMPPPLFRPRNHLMSSGHPPPPQVGHPHDHSTVPPMPVDHQQHAFVHGMG 428
Query: 406 -----MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
MD + + P+SP+ W V + G++D S+ + K G L +
Sbjct: 429 RGPPNMDRVPYPRGYEGPNSPRSWNPLAVDRGNPGGTADTSSLTSRNETPVKNGNPLQNP 488
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
+ + T+EI +P + VYGEN SNL ++RQ SGA V VH+ + G+T+ +V++SG
Sbjct: 489 N------SLTIEITIPYMYLTHVYGENNSNLTQIRQTSGANVAVHDSKPGATEGLVIVSG 542
Query: 521 TPDETQAAQSLLQAFILTG 539
PD+T AAQ L+Q FIL G
Sbjct: 543 APDQTHAAQCLIQGFILCG 561
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 82/168 (48%), Gaps = 28/168 (16%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FRI+C K V GG + L + VGA +ER++ + E S
Sbjct: 21 FRIVCPAAKTADVAAIGGDGAKILVEDL-----VGA-----EERVVVIVGDE------SA 64
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
AQ A++ V R ++ K V+ +LV S QVGC+LG+GG I+ ++R+ +
Sbjct: 65 AQVALIRVLERTMD---------EETKNSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDS 115
Query: 308 GTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
G IR++ DQ D +QI+G F VK AV +V+ L +N++
Sbjct: 116 GAHIRVLPKDQPPP--PPGDEFIQITGNFGAVKKAVLSVSACLHENNY 161
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 106/241 (43%), Gaps = 36/241 (14%)
Query: 141 DILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAV 200
D++ V+ S + V+ +R L T+D T+ VS +++ + +VG V
Sbjct: 47 DLVGAEERVVVIVGDESAAQVALIRVLE------RTMDEETKNSTVSCKLVAPSYQVGCV 100
Query: 201 IGKGGTIIRALQSEAGA-----------------FISVGATMPECDERLITVTAS--EGP 241
+G+GG I+ ++ ++GA FI + + +++V+A E
Sbjct: 101 LGRGGKIVEKIRQDSGAHIRVLPKDQPPPPPGDEFIQITGNFGAVKKAVLSVSACLHENN 160
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGT 298
+ P+ G + SS++ + V +L+ ++VG L+GKGG+
Sbjct: 161 YGAFKPSGGGSYAPPDHHSRGAYSESAGHSSHRMFVEEEVVFKLLCRHDKVGSLIGKGGS 220
Query: 299 IISEMRKVTGTSIRII-----SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
++ ++ TG SI+I+ SD+ + IS + Q + S ++AV V RL +
Sbjct: 221 VVRALQNETGASIQIVEAGPDSDERVVVISAQETSEQ---KHSPAQEAVIRVHCRLTEIG 277
Query: 354 F 354
F
Sbjct: 278 F 278
>gi|356529691|ref|XP_003533422.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 611
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 227/416 (54%), Gaps = 68/416 (16%)
Query: 137 DLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDK 196
D + ++ + NS+LT+ SI + S+ + D++ + EV FR+LCSN+
Sbjct: 248 DPNAELFPRLNSLLTSMEGLSI------YERTTNSNESSNRDSKGGEHEVVFRLLCSNNV 301
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
G+VIGK G I+RAL+S+ GA I A + E ER++T++A E ES SPAQ AV+LVF
Sbjct: 302 AGSVIGKRGAIVRALESKTGASIIFAAPLSEHAERIVTISAIESLESCNSPAQDAVILVF 361
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-S 315
+R+IE KG S+ V ARL+VA++ V G G +I E+R+VTG I+I+
Sbjct: 362 ARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNSWSGNEGQVILELREVTGADIQILHG 421
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-HFSGTLNTARTRSTSSVLTET- 373
+ + S++D VVQI+GE+ V++A+Y +T R+RDN + + AR +S V +
Sbjct: 422 ESVPNGASDDDVVVQITGEYRCVQNALYKITSRIRDNLSPNEAVTEARPKSNWKVNKDPV 481
Query: 374 --SPYSRLKD--------PASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
P+SR K P + GVH+ L G H LS +
Sbjct: 482 KGKPFSRGKSAFPSGRFLPRNAGVHAETI---------LQNGELHTDLSEN--------- 523
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
LE G G+ A VTNTTVEIIV E+V GSV
Sbjct: 524 -------------------------------LERGRGNMFATVTNTTVEIIVSEHVFGSV 552
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
YGE+G NL R+RQISGA V V++P +G++ VVISGTPD+T AAQSLLQAFI TG
Sbjct: 553 YGEDGGNLDRIRQISGATVTVYDPSVGTSGGKVVISGTPDQTLAAQSLLQAFIQTG 608
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 97/177 (54%), Gaps = 12/177 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
+++FR++C VG +IG G+I+ L+ E I ++ ++R+I V S
Sbjct: 49 QIAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHCEDSLSSAEDRVILVIGSVSPRKG 108
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+G E S AQ+A+V VF R+ +EKG++ + V ++L+ ++Q+G ++G
Sbjct: 109 LQLGDGGEVEVSSAQEAIVRVFERVWGLEAEKGVNSNRAVNSEVFSKLLAHTSQIGAVVG 168
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
KGG I+ +R TG IR+ +C ++++ +V I+G VK A+ +V+ L+D
Sbjct: 169 KGGKNITAIRNSTGAKIRVCPPP--QCATKDEELVLITGGILAVKKALISVSHCLQD 223
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 94/230 (40%), Gaps = 61/230 (26%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC---DERLITVT 236
R EV ++L ++GAV+GKGG I A+++ GA I V P+C DE L+ +T
Sbjct: 146 RAVNSEVFSKLLAHTSQIGAVVGKGGKNITAIRNSTGAKIRV-CPPPQCATKDEELVLIT 204
Query: 237 AS----------------EGPESRYSPAQKAVVLV--------------FSRLIE-GTSE 265
+ P P ++ V F RL TS
Sbjct: 205 GGILAVKKALISVSHCLQDCPPLCKVPVSSSIPTVSSFDRSSSDPNAELFPRLNSLLTSM 264
Query: 266 KGLDF---------SSNKGLL-----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+GL SSN+ V RL+ ++N G ++GK G I+ + TG SI
Sbjct: 265 EGLSIYERTTNSNESSNRDSKGGEHEVVFRLLCSNNVAGSVIGKRGAIVRALESKTGASI 324
Query: 312 RIISDQLLKCISEN-DRVVQISG------EFSKVKDAVYNVTGRLRDNHF 354
+ +SE+ +R+V IS S +DAV V R+ ++H
Sbjct: 325 IFAAP-----LSEHAERIVTISAIESLESCNSPAQDAVILVFARIIEDHI 369
>gi|449436912|ref|XP_004136236.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449522219|ref|XP_004168125.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 693
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 214/366 (58%), Gaps = 28/366 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+S+R+LC ++VG VIGKGG I++ LQ + G I V + ++R+I V P+ R
Sbjct: 338 LSYRLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAHPDDRI 397
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
SP Q AV V +R+++ ++ S + L+ AR +V+SNQ+GCLLGKGG+II+EMRK
Sbjct: 398 SPVQDAVFRVQARIVKAAAD-----SKEQNLV--ARFLVSSNQIGCLLGKGGSIIAEMRK 450
Query: 306 VTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
TG IRI+ +Q+ KC E++ VVQI+GE V+DA++ +T RLR + F + +
Sbjct: 451 STGAYIRILGKEQIPKCAGEDEEVVQINGEPETVQDAMFQITTRLRHHFFRDAFPSVNSH 510
Query: 365 STSSV---LTETSPYSRLKDPASFGVHSSVAVS-HDFSQ----PPLTQGMDHLG-LSHSL 415
S + L Y ++ + G++SS+ S H F P L+ D H
Sbjct: 511 SNPAFIDRLPSFPSYFGRRELSPPGIYSSLGPSFHKFDALSGIPSLSDLRDDRPPFLHRP 570
Query: 416 DCP--SSPKLWTAQTVTGVHLRGSSDVGRGWSQ-GLSHHKGGLELGSGSKSAIVTNTTVE 472
P S K W++Q G + G G S +HH+ G G+ AI+T+TTVE
Sbjct: 571 GAPLLSDRKPWSSQ--------GLVEGGVGLSDFAGAHHRRIAGFGGGNSPAIITSTTVE 622
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++VP N++ + GENG L ++RQIS AK+ + EP+ G + +++ISGTP++T AAQSL+
Sbjct: 623 VVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGDVETMIIISGTPEQTHAAQSLI 682
Query: 533 QAFILT 538
QAF+++
Sbjct: 683 QAFVIS 688
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/442 (24%), Positives = 175/442 (39%), Gaps = 103/442 (23%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE-----GPE 242
FR+L ++ +++G+ G + ++ E G I V T+P CDER+ + S PE
Sbjct: 48 FRVLFPVSRIDSLVGRDGDGLSKIREETGVEIRVEDTIPGCDERIAVIGGSNQETEVNPE 107
Query: 243 SR----------------------------------------YSPAQKAVVLVFSRLIEG 262
+ +S +KA+ LV ++ +
Sbjct: 108 KKSKEDNKNSEVEENDGDIAKLKKKEDKDSPPVEDAKQKEVTHSQLRKALFLVSEKIFDE 167
Query: 263 TSE-KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLK 320
E G D +K RL+V S+QVGCLLGKGG+++ +M +G IRI+ D+L
Sbjct: 168 EPEADGTDVEGDKLPTFILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPP 227
Query: 321 CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST-------------- 366
++ N +VQISG VK A+ V +L +N + A + +
Sbjct: 228 FVATNVELVQISGGIDVVKKALELVFQQLIENPPNDKDPVASSNAAQSSRSSGQSLSRAH 287
Query: 367 -----SSVLTETSPYSRLKDPASFGVHS---SVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
SS T PYS +D +F HS S+A + P H LS+ L CP
Sbjct: 288 ESPRGSSFNTHGGPYSVPRDVGNF--HSSAPSLAPKQYEACIPGRSKPSHEILSYRLLCP 345
Query: 419 S----------SPKLWTAQTVTGVHLR---GSSDVGRG--WSQGLSHHKGGL-------- 455
+ + T Q TG ++ G+ D G +H +
Sbjct: 346 TERVGNVIGKGGAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAHPDDRISPVQDAVF 405
Query: 456 ----ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV----HEP 507
+ + + N +V N IG + G+ GS + +R+ +GA + + P
Sbjct: 406 RVQARIVKAAADSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIP 465
Query: 508 RL-GSTDRIVVISGTPDETQAA 528
+ G + +V I+G P+ Q A
Sbjct: 466 KCAGEDEEVVQINGEPETVQDA 487
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 128 GAVSQEILPDLHVDIL-------SQRNSVLTTAPSSSISYVSAVRPLSLE-SDRVATLDA 179
GA+ + + D DI S+ +L P+ +S V+ R+ A
Sbjct: 357 GAIVKTLQQDTGCDIKVVDGALDSEDRIILVAGPAHPDDRISPVQDAVFRVQARIVKAAA 416
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC---DERLIT 234
+++Q + R L S++++G ++GKGG+II ++ GA+I + +P+C DE ++
Sbjct: 417 DSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAYIRILGKEQIPKCAGEDEEVVQ 476
Query: 235 VTASEGPESRYSPAQKAVVLVFSRL 259
+ PE+ Q A+ + +RL
Sbjct: 477 INGE--PET----VQDAMFQITTRL 495
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/384 (38%), Positives = 212/384 (55%), Gaps = 42/384 (10%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V + ++EV+FR+LC DKVG++IGKGG ++RALQ+E+GA I V + +ER+I
Sbjct: 264 VGPFNRPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERII 323
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
++A E E R+S AQ V+ V +R++E + F + ++ ARL+V S +G LL
Sbjct: 324 VISARENLERRHSLAQDGVMRVHNRIVE------IGFEPSAAVV--ARLLVHSPYIGRLL 375
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GKGG +ISEMR+ TG SIR+ + DQ K S++D +VQ+ G V+DA++ + RLR+
Sbjct: 376 GKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREA 435
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRL-----KDPASFG-VHSSVAVSHD-------FSQ 399
F G L P + PAS HS V H+ F +
Sbjct: 436 MFPGRLPFQGMGGPPPPFMGPYPEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDR 495
Query: 400 PPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG--SSDVGRGWSQGLSHHKGGLEL 457
PP D P SP WT Q H G DV G++ L +
Sbjct: 496 PP----------GPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFA--LRNEP----- 538
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
GS++ ++T+ VEI++P+ +G VYGEN SNL ++Q+SGA V+VH+P+ G+T+ +VV
Sbjct: 539 -IGSENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVV 597
Query: 518 ISGTPDETQAAQSLLQAFILTGPS 541
+SGT D+ AQSLL AFIL G S
Sbjct: 598 VSGTSDQAHFAQSLLHAFILCGQS 621
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 111/223 (49%), Gaps = 46/223 (20%)
Query: 171 SDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP-ECD 229
S R AT T + V FR+LC + GA+IGKGG++IR LQS G+ I V +P +
Sbjct: 6 SKRPAT--TATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSE 63
Query: 230 ERLITVTA-------------SEGP---------------------ESRYSPAQKAVVLV 255
ER++ + A SE P E S AQ A++ V
Sbjct: 64 ERVVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRV 123
Query: 256 FSRLIEGTSE-----KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
F R++ G LD ++GL R++V NQV L+ KGG +I ++R+ +G
Sbjct: 124 FERIVFGDDAATVDGDELDKGESEGL---CRMIVRGNQVDYLMSKGGKMIQKIREDSGAI 180
Query: 311 IRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+RI S DQ+ C D V+Q++G+FS VK A+ VT L+++
Sbjct: 181 VRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQES 223
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 146/375 (38%), Positives = 209/375 (55%), Gaps = 42/375 (11%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
++EVSFR+LC DKVG++IGKGG ++RALQ+E+GA I V + +ER+I ++A E E
Sbjct: 274 EEEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLE 333
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R+S AQ V+ V +R++E + F + ++ ARL+V S +G LLGKGG +ISE
Sbjct: 334 RRHSLAQDGVMRVHNRIVE------IGFEPSAAVV--ARLLVHSPYIGRLLGKGGHLISE 385
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR+ TG SIR+ + DQ K S++D +VQ+ G V+DA++ + RLR+ F G L
Sbjct: 386 MRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQ 445
Query: 362 RTRSTSSVLTETSPYSRL-----KDPASFG-VHSSVAVSHD-------FSQPPLTQGMDH 408
P + PAS HS V H+ F +PP
Sbjct: 446 GLGGPPPPFMGPYPEPPPPFGPRQYPASPDRYHSPVGSFHERHCHGPGFDRPP------- 498
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRG--SSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
D P SP WT Q H G DV G++ L + GS++ +
Sbjct: 499 ---GPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFA--LRNEP------IGSENPAM 547
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T+ VEI++P+ +G VYGEN SNL ++Q+SGA V+VH+P+ G+T+ +VV+SGT D+
Sbjct: 548 TSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGATEGLVVVSGTSDQAH 607
Query: 527 AAQSLLQAFILTGPS 541
AQSLL AFIL G S
Sbjct: 608 FAQSLLHAFILCGQS 622
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 46/215 (21%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP-ECDERLITVTA-- 237
T + V FR+LC + GA+IGKGG++IR LQS G+ I V +P +ER++ + A
Sbjct: 14 TAAESVHFRLLCPAARTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPS 73
Query: 238 -----------SEGPESRY---------------------SPAQKAVVLVFSRLIEGTSE 265
SE P S S AQ A++ V R++ G
Sbjct: 74 GKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVLERIVFGDDA 133
Query: 266 -----KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLL 319
GLD ++ L R++V NQV L+ KGG +I +R+ +G +RI S DQ+
Sbjct: 134 ASVDGDGLDKGESESL---CRMIVRGNQVDFLMSKGGKMIQRIREDSGAIVRISSTDQIP 190
Query: 320 KCISENDRVVQ--ISGEFSKVKDAVYNVTGRLRDN 352
C D V+Q I+G+FS VK A+ +T L+++
Sbjct: 191 PCAFPGDVVIQMKITGKFSSVKKALLLITNCLQES 225
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 207/393 (52%), Gaps = 57/393 (14%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C N+ VG++IGKGG+ IRALQSE GA I + + +ER+I ++A E E
Sbjct: 23 EQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSE 82
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AV+ V SR+ SE +D SS V ARL+V S +GCLLGKGG+II+E
Sbjct: 83 MMHSPAQDAVLRVHSRI----SESSMDKSS----AVTARLLVPSQHIGCLLGKGGSIIAE 134
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MRK+TG IRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD +
Sbjct: 135 MRKITGAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKPHPG 194
Query: 362 RTRSTSSVLTETSPYSRLKDPA--------------SFGVHSSVA----VSHDFSQPPLT 403
P+ ++PA SF + V H +PP
Sbjct: 195 GGMPPYPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRADRPMGPFDMVDH---RPPPP 251
Query: 404 QGMDHLG---LSHSLDCPS-----------SPKLWTAQTVTGVHLRGSSDVGRGWSQGL- 448
M+H+G + +S C SP W + +S+ R + +
Sbjct: 252 HSMEHMGADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAP-------NSEAPRNMPETVP 304
Query: 449 --SHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
KG + +G+ + E+I+P IG + G NGS+L ++++SGA + VH
Sbjct: 305 PADFRKGAV---AGTNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHH 361
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
P+ G + +V+I G PD+T+ AQSLL AFI G
Sbjct: 362 PKPGDANALVIICGDPDQTKKAQSLLHAFIFCG 394
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 207/393 (52%), Gaps = 57/393 (14%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C N+ VG++IGKGG+ IRALQSE GA I + + +ER+I ++A E E
Sbjct: 234 EQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSE 293
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AV+ V SR+ SE +D SS V ARL+V S +GCLLGKGG+II+E
Sbjct: 294 MMHSPAQDAVLRVHSRI----SESSMDKSS----AVTARLLVPSQHIGCLLGKGGSIIAE 345
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MRK+TG IRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD +
Sbjct: 346 MRKITGAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKPHPG 405
Query: 362 RTRSTSSVLTETSPYSRLKDPA--------------SFGVHSSVA----VSHDFSQPPLT 403
P+ ++PA SF + V H +PP
Sbjct: 406 GGMPPYPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRADRPMGPFDMVDH---RPPPP 462
Query: 404 QGMDHLG---LSHSLDCPS-----------SPKLWTAQTVTGVHLRGSSDVGRGWSQGL- 448
M+H+G + +S C SP W + +S+ R + +
Sbjct: 463 HSMEHMGADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAP-------NSEAPRNMPETVP 515
Query: 449 --SHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
KG + +G+ + E+I+P IG + G NGS+L ++++SGA + VH
Sbjct: 516 PADFRKGAV---AGTNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHH 572
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
P+ G + +V+I G PD+T+ AQSLL AFI G
Sbjct: 573 PKPGDANALVIICGDPDQTKKAQSLLHAFIFCG 605
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 211/393 (53%), Gaps = 55/393 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C ND VG VIGKGG+ IRALQSE GA + V + + DER+I ++A E E
Sbjct: 154 EQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSE 213
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SP+Q A++ V+S++ SE +D SS+ V ARL+V + +GCLLGKGG+II+E
Sbjct: 214 MMRSPSQDALLRVYSKI----SEASMDKSSS----VPARLLVPAQHIGCLLGKGGSIIAE 265
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD------NHFS 355
MRK+TG SIRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD H S
Sbjct: 266 MRKLTGASIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPKPHPS 325
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPL------------ 402
G + V + SR + P+ H F PP+
Sbjct: 326 GGMPP-----YPPVGNPSHHQSRQEAPSHHSGGMPPYPMHPFRPNPPMGPFDVADPRPPG 380
Query: 403 ---TQGMDHLG---LSHSLDCP----------SSPKLWTAQTVTGVHLRGSSDVGRGWSQ 446
+ M+H+G + + C SP+ W + R D
Sbjct: 381 PPPSHPMEHMGADRMPYPYGCEQGGPRPFVEQPSPRTWAPEAPATDAPRSMPDT----VP 436
Query: 447 GLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
+ KG + S ++ A TT E+++P IG V G NGS+L +++ISGA + VH+
Sbjct: 437 AVDFRKG--PVSSENQVATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHD 494
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
P+ G T+ V+I G P++T+ AQSL+ AFI G
Sbjct: 495 PKPGDTNSTVIICGDPEQTKKAQSLIHAFIFCG 527
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/393 (34%), Positives = 207/393 (52%), Gaps = 57/393 (14%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C N+ VG++IGKGG+ IRALQSE GA I + + +ER+I ++A E E
Sbjct: 242 EQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVISAHENSE 301
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AV+ V SR+ SE +D SS V ARL+V S +GCLLGKGG+II+E
Sbjct: 302 MMHSPAQDAVLRVHSRI----SESSMDKSS----AVTARLLVPSQHIGCLLGKGGSIIAE 353
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MRK+TG IRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD +
Sbjct: 354 MRKITGAGIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKPHPG 413
Query: 362 RTRSTSSVLTETSPYSRLKDPA--------------SFGVHSSVA----VSHDFSQPPLT 403
P+ ++PA SF + V H +PP
Sbjct: 414 GGMPPYPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRADRPMGPFDMVDH---RPPPP 470
Query: 404 QGMDHLG---LSHSLDCPS-----------SPKLWTAQTVTGVHLRGSSDVGRGWSQGL- 448
M+H+G + +S C SP W + +S+ R + +
Sbjct: 471 HSMEHMGADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAP-------NSEAPRNMPETVP 523
Query: 449 --SHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
KG + +G+ + E+I+P IG + G NGS+L ++++SGA + VH
Sbjct: 524 PADFRKGAV---AGTNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHH 580
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
P+ G + +V+I G PD+T+ AQSLL AFI G
Sbjct: 581 PKPGDANALVIICGDPDQTKKAQSLLHAFIFCG 613
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
+ RILC + + A+ G R L + P DE +++++ + P
Sbjct: 37 TLRILCPSSRASALRGAS----RDLHVD---------QPPVGDEAVLSISGPDAPAV--- 80
Query: 247 PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A +A V + G G + G+ V R++ AS QVGC+LGKGG + MR+
Sbjct: 81 -AVRAWERVVGHRVGGDEAAGEEEREVPGV-VGCRMLAASGQVGCVLGKGGKTVERMRQE 138
Query: 307 TGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+G IR+ DQL + D ++ ISG FS V+ A+ VT L+DN N R
Sbjct: 139 SGAQIRVFRNRDQLPPWAAPVDELIHISGNFSAVRKALLLVTTCLQDNPRPDASNFPPGR 198
Query: 365 STSSVLTETSPYSR 378
P+S+
Sbjct: 199 FGPPGPVGIDPHSQ 212
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 230/382 (60%), Gaps = 43/382 (11%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++FR+LC +++VG +IGKGGTII+ LQ+E G I V +P+ ++R+I ++ S P+
Sbjct: 332 QDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAHPD 391
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R SPAQ AV+ V SR++ + +K V ARL+V+S Q+GCLLGKGG II+E
Sbjct: 392 DRISPAQDAVLRVQSRIVRAIPD-------SKEKTVIARLLVSSTQIGCLLGKGGAIIAE 444
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF--SGTLN 359
MRK++G IRI+ DQ+ KC SEN+ VVQI+GEF V++A+ +T RLR +HF + ++N
Sbjct: 445 MRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHFRDAFSVN 504
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS-HDFS----------------QPPL 402
+ + + PY ++ + G++S++ S H F + P
Sbjct: 505 HPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPF 564
Query: 403 TQGMDHLGLS-HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE----- 456
+ LG+ H + S W Q + + G GL+ GG +
Sbjct: 565 MHSIHRLGIPPHIPERKPSSAPWGHQGL----------IEGGVPIGLADFAGGPQRRIPG 614
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G G++ AI+T+TTVE++VP +++ S+YGE+G L ++RQIS AK+ + EP+ G+++ ++
Sbjct: 615 FGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVI 674
Query: 517 VISGTPDETQAAQSLLQAFILT 538
+ISGTP++T AAQSL+QAF+L+
Sbjct: 675 IISGTPEQTHAAQSLIQAFVLS 696
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 48/248 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP---- 241
V FR+LC K G+VIGKGGTII ++ E G + V T+ CDER++ +T S+
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 242 ----------------------------------------ESRYSPAQKAVVLVFSRLIE 261
E S QKA++LVF R+ E
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 262 GTSE-KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLL 319
G SE G D SNK RL+V S+QVGCLLGKGG++I +M +G IRI+ D+L
Sbjct: 165 GESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLP 224
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--HFSGTLNTARTRSTSSVLTETSPYS 377
C S +D +VQI+GE K A+ +++ +L +N ++T T S+S + P S
Sbjct: 225 LCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSSSHLFGPPLPRS 284
Query: 378 RLKDPASF 385
+ P ++
Sbjct: 285 EAQPPPNY 292
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 9/69 (13%)
Query: 270 FSSNKGLLVNA-----RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
+S N+ L ++ R++ +++ G ++GKGGTIIS++R+ TG +R + + + C
Sbjct: 32 YSQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVR-VEETVSGC--- 87
Query: 325 NDRVVQISG 333
++RVV I+G
Sbjct: 88 DERVVLITG 96
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
++ P + GSV G+ G+ + ++RQ +G KV V E G +R+V+I+G+ +T+A
Sbjct: 49 VLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEA 103
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 230/382 (60%), Gaps = 43/382 (11%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++FR+LC +++VG +IGKGGTII+ LQ+E G I V +P+ ++R+I ++ S P+
Sbjct: 303 QDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAHPD 362
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R SPAQ AV+ V SR++ + +K V ARL+V+S Q+GCLLGKGG II+E
Sbjct: 363 DRISPAQDAVLRVQSRIVRAIPD-------SKEKTVIARLLVSSTQIGCLLGKGGAIIAE 415
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF--SGTLN 359
MRK++G IRI+ DQ+ KC SEN+ VVQI+GEF V++A+ +T RLR +HF + ++N
Sbjct: 416 MRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHFRDAFSVN 475
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS-HDFS----------------QPPL 402
+ + + PY ++ + G++S++ S H F + P
Sbjct: 476 HPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPF 535
Query: 403 TQGMDHLGLS-HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE----- 456
+ LG+ H + S W Q + + G GL+ GG +
Sbjct: 536 MHSIHRLGIPPHIPERKPSSAPWGHQGL----------IEGGVPIGLADFAGGPQRRIPG 585
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G G++ AI+T+TTVE++VP +++ S+YGE+G L ++RQIS AK+ + EP+ G+++ ++
Sbjct: 586 FGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVI 645
Query: 517 VISGTPDETQAAQSLLQAFILT 538
+ISGTP++T AAQSL+QAF+L+
Sbjct: 646 IISGTPEQTHAAQSLIQAFVLS 667
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 19/219 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP---- 241
V FR+LC K G+VIGKGGTII ++ E G + V T+ CDER++ +T S+
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 242 -----------ESRYSPAQKAVVLVFSRLIEGTSE-KGLDFSSNKGLLVNARLVVASNQV 289
E S QKA++LVF R+ EG SE G D SNK RL+V S+QV
Sbjct: 105 NEQSKEDDSQVEKGISSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQV 164
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
GCLLGKGG++I +M +G IRI+ D+L C S +D +VQI+GE K A+ +++ +
Sbjct: 165 GCLLGKGGSVIKQMSAESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQ 224
Query: 349 LRDN--HFSGTLNTARTRSTSSVLTETSPYSRLKDPASF 385
L +N ++T T S+S + P S + P ++
Sbjct: 225 LLENPPRDYDIVSTNPTGSSSHLFGPPLPRSEAQPPPNY 263
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
++ P + GSV G+ G+ + ++RQ +G KV V E G +R+V+I+G+ +T+A
Sbjct: 49 VLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEA 103
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 211/393 (53%), Gaps = 54/393 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++C ND VG VIGKGG+ IRALQSE GA + V + + DER+I ++A E E
Sbjct: 249 EQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDERIIVISARENSE 308
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SP+Q A++ V+S++ SE +D SS+ V ARL+V + +GCLLGKGG+II+E
Sbjct: 309 MMRSPSQDALLRVYSKI----SEASMDKSSS----VPARLLVPAQHIGCLLGKGGSIIAE 360
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD------NHFS 355
MRK+TG SIRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD H S
Sbjct: 361 MRKLTGASIRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPKPHPS 420
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPL------------ 402
G + V + SR + P+ H F PP+
Sbjct: 421 GGMPP-----YPPVGNPSHHQSRQEAPSHHSGGMPPYPMHPFRPNPPMGPFDVADPRPPG 475
Query: 403 ---TQGMDHLG---LSHSLDCP----------SSPKLWTAQTVTGVHLRGSSDVGRGWSQ 446
+ M+H+G + + C SP+ W + R D
Sbjct: 476 PPPSHPMEHMGADRMPYPYGCEQGGPRPFVEQPSPRTWAPEAPATDAPRSMPDT----VP 531
Query: 447 GLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
+ KG + S ++ A TT E+++P IG V G NGS+L +++ISGA + VH+
Sbjct: 532 AVDFRKGPVS-SSENQVATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHD 590
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
P+ G T+ V+I G P++T+ AQSL+ AFI G
Sbjct: 591 PKPGDTNSTVIICGDPEQTKKAQSLIHAFIFCG 623
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 95/245 (38%), Gaps = 53/245 (21%)
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGE 334
+V R++ A QVGC+LGKGG + MR+ +G IR+ + Q+ C + D ++ ISG
Sbjct: 109 VVGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGS 168
Query: 335 FSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS 394
FS + A+ V+ L+DN T N P R P GV
Sbjct: 169 FSAARKALLLVSTCLQDNPRPDTSNF--------------PSGRPFGPPGSGV------- 207
Query: 395 HDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG 454
G +D S V H R S G
Sbjct: 208 ---------------GCPPGVDPHSQRSYLPPPHVPDYHARNFSSNG------------- 239
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
G + + +I +++G V G+ GS + L+ +GA V V +P S +R
Sbjct: 240 --AAPGPRFFVEQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGASVKVIDPVADSDER 297
Query: 515 IVVIS 519
I+VIS
Sbjct: 298 IIVIS 302
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 96/227 (42%), Gaps = 74/227 (32%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPEC---DERLITVTASE 239
V R+L + +VG V+GKGG + ++ E+GA I V +P C + LI ++ S
Sbjct: 110 VGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGS- 168
Query: 240 GPESRYSPAQKAVVLVFSRLIEGT---------------------SEKGLD--------- 269
+S A+KA++LV + L + G+D
Sbjct: 169 -----FSAARKALLLVSTCLQDNPRPDTSNFPSGRPFGPPGSGVGCPPGVDPHSQRSYLP 223
Query: 270 -----------FSSNKG-----LLVNA----RLVVASNQVGCLLGKGGTIISEMRKVTGT 309
FSSN V R++ ++ VG ++GKGG+ I ++ TG
Sbjct: 224 PPHVPDYHARNFSSNGAAPGPRFFVEQEIVFRMICLNDMVGGVIGKGGSTIRALQSETGA 283
Query: 310 SIRII-----SDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRL 349
S+++I SD+ + IS EN +++ S +DA+ V ++
Sbjct: 284 SVKVIDPVADSDERIIVISARENSEMMR-----SPSQDALLRVYSKI 325
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/372 (36%), Positives = 210/372 (56%), Gaps = 33/372 (8%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + ++FR+LC ++ VG +IGKGG+II+ LQ E + I V +P ++ +I ++
Sbjct: 306 RPPPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPA 365
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ R SP Q+A+ V +R+ S LD + L AR++V+S +GCLLGKGG+I
Sbjct: 366 HPDDRISPVQEAIFRVQNRI----SRAMLDSKEHSML---ARVIVSSKHIGCLLGKGGSI 418
Query: 300 ISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+EMR ++G IR++ D+ KC+SE+D V+Q+SG V DA+ +T RLR+N F
Sbjct: 419 IAEMRNLSGAHIRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAF 478
Query: 359 NTARTRSTSSVLTETSPYSRL---KDPASFGVHSSVAVSH---DF---SQPPLTQGMDHL 409
+A S S+ L + SP+ + + G++S + H DF PP M
Sbjct: 479 PSANFPSNSAFLDQHSPFPPYLGRRGLSPPGMYSDLGPRHPHADFPLDDHPPFMNNMYRS 538
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG---LELGSGSKSAIV 466
G+ + S K W + + L G G GL GG + +G I+
Sbjct: 539 GIPPLI---SERKPWGPKGI----LEG------GGHMGLPEFAGGPRRISGFAGGSQPII 585
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T+TTVE++VP ++ +YGENG L ++ QIS A VI+ +P G+ + ++ISGTP++T
Sbjct: 586 TSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISGTPEQTN 645
Query: 527 AAQSLLQAFILT 538
AAQSL+QAF+++
Sbjct: 646 AAQSLIQAFVMS 657
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 138/301 (45%), Gaps = 56/301 (18%)
Query: 229 DERLITVTASEGPESRYSPA-QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
D+ ++V S+ + +P +AV+LVF R+ E ++G D S KG RL++ SN
Sbjct: 120 DKDSVSVEDSQSEKVNSNPTIMRAVMLVFERVAE---DEGGD-ESKKGYF-GLRLLILSN 174
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
QVGC+LGKGG++I M +G IRI+ +++ C S++D +VQI+G V+ A+ +V
Sbjct: 175 QVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGGVEVVRRALQSVF 234
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-PPLTQG 405
+ L E SP +D S + + SH + Q PP +
Sbjct: 235 QQ---------------------LVENSP----RDHESLPTNLTGPSSHSYGQFPPNKRT 269
Query: 406 MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
G S + P +A + H+G + LG
Sbjct: 270 FAGQGASFATGPNEIPVFHSAPMIP------------------KFHEGAI-LGRMRPPPE 310
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT--PD 523
+ T ++ P +G++ G+ GS + L+Q + +++ V E GS D I++ISG PD
Sbjct: 311 I--LTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVIEAIPGSEDCIIIISGPAHPD 368
Query: 524 E 524
+
Sbjct: 369 D 369
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 164 VRPLSLESDRVATLDARTQQQEVSF--RILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+R + L +RVA + + ++ F R+L +++VG ++GKGG++I+ + +E+GA I +
Sbjct: 141 MRAVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRI 200
Query: 222 --GATMPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263
+P C + L+ +T ++A+ VF +L+E +
Sbjct: 201 LPKEEIPACASDSDELVQITGG------VEVVRRALQSVFQQLVENS 241
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 145/394 (36%), Positives = 214/394 (54%), Gaps = 57/394 (14%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++ N+ VG++IGKGG+ IRALQSE GA I + + + DER++ +TA E +
Sbjct: 247 EQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSD 306
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AVV V+SR+ SE +D SS+ ARL+V S +GCLLGKGG+IISE
Sbjct: 307 MLHSPAQDAVVRVYSRI----SEASIDRSSH----TPARLLVPSQHIGCLLGKGGSIISE 358
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD-----NHFSG 356
MRK+TG +IRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD H SG
Sbjct: 359 MRKITGANIRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSG 418
Query: 357 TL-----------NTARTRSTSSVLTETS-----PYSRLKDPASFG-----------VHS 389
+ + +R L + P + A G VHS
Sbjct: 419 GMPPYPPVGNIPVHQSRQEQPPPHLHPSGGMPPYPMHPFRPDAPMGHFEMGDHRPPPVHS 478
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGL- 448
+ D P G++ G L+ PS +T R +S+V R S +
Sbjct: 479 MEYMGADRM--PYLYGVEQGGPRPFLEQPS------PRTCPPEAPRTNSEVPRNMSDAVP 530
Query: 449 --SHHKGGLELGSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505
KG + + ++ + T T T E+I+P N IG V G NGS + + ++SGA + VH
Sbjct: 531 ATDFRKGPVAI----ENQVATPTGTTEVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVH 586
Query: 506 EPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
+P+ G + VVI G P+ET+ AQSL+ AFI G
Sbjct: 587 DPKAGDANSKVVICGDPEETKKAQSLIHAFIFCG 620
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 118/298 (39%), Gaps = 61/298 (20%)
Query: 226 PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL-LVNARLVV 284
P DE ++ ++ + P + A +A V +EG G + + V R++
Sbjct: 60 PVGDEAVLVISGPDTPAA----AVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGCRMLA 115
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAV 342
A QVGC+LGKGG + MR+ G IR+ + QL D ++ ISG FS+V+ A+
Sbjct: 116 AGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
V+ L+DN T N R FG+ S PP
Sbjct: 176 LAVSTCLQDNPRPDTHNIPIGR-------------------PFGLPGS-----GTGCPP- 210
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG-SSDVGRGWSQGLSHHKGGLELGSGS 461
GMD P S + + + H R S+ G G
Sbjct: 211 --GMD----------PHSQRSYLPPHIPDYHTRNYPSNAGP----------------PGP 242
Query: 462 KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+ +I+ ++GS+ G+ GS + L+ +GA + + EP S +R+V I+
Sbjct: 243 RFFFEQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAIT 300
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 206/390 (52%), Gaps = 51/390 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V FR+LC DKVG++IGKGGT++RALQ+E GA I + T P+ DERL+ ++A E E
Sbjct: 341 EEDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDT-PDLDERLVVISARETLE 399
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
YSPAQ+AV+ R+ E G V ARL+V Q+G L+G+GG II++
Sbjct: 400 QTYSPAQEAVIRAHCRIAE--------IGYEPGAAVVARLLVHGQQIGYLVGRGGHIIND 451
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR+ TGTSI+I DQ+ +D VVQ+ G V+DA++++T R+RD F +
Sbjct: 452 MRRGTGTSIQIFPRDQIQNGGPMSDEVVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVP 511
Query: 362 RTRSTSSVLT---ETSPY-----SRLKDPASF--------GVHSSVAVSHDFSQPPLT-- 403
+ L+ ET P S P + G SH P
Sbjct: 512 NFNNHPPYLSPHPETPPPLFRPGSNAHSPGYYPSQAGGLRGTERPPYHSHPLDHQPAYPH 571
Query: 404 -------QGMDHLGLSHSLDCPS-------SPKLWTAQTVTGVHLRGSSDVGRGWSQGLS 449
MD + H ++ P SP+ WT+Q SS++ +G + G
Sbjct: 572 NVSFGGGNNMDGVPYPHGMERPGPGSFERPSPRSWTSQV--------SSEIPKGPTDGFG 623
Query: 450 HHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL 509
GSG + T++E+++P+ +I +YGEN +N+ ++QISGA ++VH+ +
Sbjct: 624 MVSRNEPYGSGGPH-FMGGTSMEMVIPQTLICHIYGENNNNIAHVQQISGAMLVVHDAKP 682
Query: 510 GSTDRIVVISGTPDETQAAQSLLQAFILTG 539
G D V++SGTPD+ +AAQ L+ AFIL G
Sbjct: 683 GMFDGKVIMSGTPDQIRAAQRLVHAFILCG 712
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 57/241 (23%)
Query: 161 VSAVRPLSLESD---RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGA 217
VS P +L D R A + + + FR+LC KV +I+R L+ GA
Sbjct: 40 VSTTAPATLGLDTTTRDAPVLKPSSPSDTLFRLLCPASKVS-------SILRHLRDIPGA 92
Query: 218 FISVGATMPECDERLITVTASE------------------------------GPESRYSP 247
I V +P C+E ++ + A G S
Sbjct: 93 RIHVDEPLPSCEECVLVILAGSPSKPAHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQ 152
Query: 248 AQKAVVLVFS---RLIEGTSE------KGLDFSSNKGL-------LVNARLVVASNQVGC 291
AQ+A++ F R+ E + E K D + N + LV RL+ S+QVG
Sbjct: 153 AQQALLRTFESIVRMNEDSGENQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGR 212
Query: 292 LLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+LG+GG + ++R+ + ++I DQ C S D ++QISG FS V A+ +V+ L+
Sbjct: 213 VLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELIQISGNFSAVMKALSSVSSCLQ 272
Query: 351 D 351
D
Sbjct: 273 D 273
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 206/390 (52%), Gaps = 51/390 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V FR+LC DKVG++IGKGGT++RALQ+E GA I + T P+ DERL+ ++A E E
Sbjct: 341 EEDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDT-PDLDERLVVISARETLE 399
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
YSPAQ+AV+ R+ E G V ARL+V Q+G L+G+GG II++
Sbjct: 400 QTYSPAQEAVIRAHCRIAE--------IGYEPGAAVVARLLVHGQQIGYLVGRGGHIIND 451
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR+ TGTSI+I DQ+ +D VVQ+ G V+DA++++T R+RD F +
Sbjct: 452 MRRGTGTSIQIFPRDQIQNGGPMSDEVVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVP 511
Query: 362 RTRSTSSVLT---ETSPY-----SRLKDPASF--------GVHSSVAVSHDFSQPPLT-- 403
+ L+ ET P S P + G SH P
Sbjct: 512 NFNNHPPYLSPHPETPPPLFRPGSNAHSPGYYPSQAGGLRGTERPPYHSHPLDHQPAYPH 571
Query: 404 -------QGMDHLGLSHSLDCPS-------SPKLWTAQTVTGVHLRGSSDVGRGWSQGLS 449
MD + H ++ P SP+ WT+Q SS++ +G + G
Sbjct: 572 NVSFGGGNNMDGVPYPHGMERPGPGSFERPSPRSWTSQV--------SSEIPKGPTDGFG 623
Query: 450 HHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL 509
GSG + T++E+++P+ +I +YGEN +N+ ++QISGA ++VH+ +
Sbjct: 624 MVSRNEPYGSGGPH-FMGGTSMEMVIPQTLICHIYGENNNNIAHVQQISGAMLVVHDAKP 682
Query: 510 GSTDRIVVISGTPDETQAAQSLLQAFILTG 539
G D V++SGTPD+ +AAQ L+ AFIL G
Sbjct: 683 GMFDGKVIMSGTPDQIRAAQRLVHAFILCG 712
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 57/241 (23%)
Query: 161 VSAVRPLSLESD---RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGA 217
VS P +L D R A + + + FR+LC KV +I+R L+ GA
Sbjct: 40 VSTTAPATLGLDTTTRDAPVLKPSSPSDTLFRLLCPASKVS-------SILRHLRDIPGA 92
Query: 218 FISVGATMPECDERLITVTASE------------------------------GPESRYSP 247
I V +P C+E ++ + A G S
Sbjct: 93 RIHVDEPLPSCEECVLVILAGSPSKPTHTNPGNDREFREHDVHRNVSSDTVAGDSDERSQ 152
Query: 248 AQKAVVLVFS---RLIEGTSE------KGLDFSSNKGL-------LVNARLVVASNQVGC 291
AQ+A++ F R+ E + E K D + N + LV RL+ S+QVG
Sbjct: 153 AQQALLRTFESIVRMNEDSGENQEIQKKNADSAPNDRISGGETDGLVVCRLLAPSHQVGR 212
Query: 292 LLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+LG+GG + ++R+ + ++I DQ C S D ++QISG FS V A+ +V+ L+
Sbjct: 213 VLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELIQISGNFSAVMKALSSVSSCLQ 272
Query: 351 D 351
D
Sbjct: 273 D 273
>gi|242045198|ref|XP_002460470.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
gi|241923847|gb|EER96991.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
Length = 371
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 211/386 (54%), Gaps = 62/386 (16%)
Query: 194 NDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVV 253
N+ VG++IGKGG+ IRALQSE GA I + + + DER++ ++A E + +SPAQ AVV
Sbjct: 5 NEMVGSIIGKGGSTIRALQSETGACIKILELVADSDERVVAISARENSDMMHSPAQDAVV 64
Query: 254 LVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI 313
V+SR+ SE +D SS ARL+V S +GCLLGKGG+II+EMRK+TG SIRI
Sbjct: 65 RVYSRI----SEASMDRSSP----TPARLLVPSQHIGCLLGKGGSIITEMRKITGASIRI 116
Query: 314 I-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD-----NHFSGTLNTARTRSTS 367
++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD H SG +
Sbjct: 117 FGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSGGMPPYPPVGNI 176
Query: 368 SVLTETSPYSRLKDPASFGVHSSVAVS----HDF-------------SQPPLTQGMDHLG 410
V + ++P +H S + H F +PP M+++G
Sbjct: 177 PV------HQSRQEPPPPHLHPSGGMPPYPMHSFRPDAPMGHFETGDHRPPPVHSMEYMG 230
Query: 411 ---LSHS-----------LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGL---SHHKG 453
+ +S L+ P SP+ W + R +S+ R + KG
Sbjct: 231 ADRMPYSYGGEQGGPRPFLEQP-SPRTWPPEAP-----RTNSEAPRNMPDAVLATDLRKG 284
Query: 454 GLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
+ S ++ A T+TT E+++P IG V G +GS + +RQ+SGA + VH+P+ G T+
Sbjct: 285 --PVASENQVATPTSTTTEVVIPCKYIGFVCGNSGSEIEEIRQMSGASITVHDPKPGDTN 342
Query: 514 RIVVISGTPDETQAAQSLLQAFILTG 539
IVVI G P++T+ AQSL+ AFI G
Sbjct: 343 SIVVICGDPEQTKKAQSLIHAFIFCG 368
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 217/405 (53%), Gaps = 48/405 (11%)
Query: 139 HVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVG 198
H D+ NS L + SI+ S + ++ ++LD++ V FR+LCSN+ G
Sbjct: 231 HEDLFPHLNSWLPSMEGLSINDASK---QTTNANGNSSLDSKGSGHAVVFRLLCSNNVAG 287
Query: 199 AVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258
+VIGK G+I+R + GA I + + +ER++T++A E ES SPAQ AV+LVF+R
Sbjct: 288 SVIGKKGSIVRTFEIRTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVFTR 347
Query: 259 LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
+ E G ++ V ARL++ ++ + L G G +ISE+R+V+G I+++ +
Sbjct: 348 IAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELRQVSGADIQLLHGEP 407
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSR 378
+ S+ND VVQI+G + V++A+ +T +RDN + L S L + + S+
Sbjct: 408 IPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLTNELLAEAKIKPSFPLNKDTVRSK 467
Query: 379 L--KDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG 436
+ +SF F++ P P + ++ A+ VT
Sbjct: 468 FITRKKSSF----------PFARVP----------------PQNAGVYQAKKVT------ 495
Query: 437 SSDVGRGWSQGLSHHK--GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRL 494
G SH +E G G+ A VTNTTVEIIV E+V GSVYGE+G NL R+
Sbjct: 496 --------ENGESHTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRI 547
Query: 495 RQISGAKVIVHEP-RLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
RQISGA V V +P G++ VVISGTPD+T AAQSLLQAFI T
Sbjct: 548 RQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQT 592
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 24/208 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP--- 241
+++FR++C + VG +IG G+I+ L+ E G I + D+R+I V S
Sbjct: 38 QIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKG 97
Query: 242 ------ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
E S AQ+ VV VF R+ SEKG + V +L+ S+QVG ++GK
Sbjct: 98 IVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGE------VYGKLLAHSSQVGAIVGK 151
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GG IS +R +G++IR+ C ++++ ++ I+GE VK A+ V+ L+D
Sbjct: 152 GGKNISNIRNNSGSNIRVCPAP--HCAAKDEELILITGESLAVKKALIYVSYCLQDCPPM 209
Query: 356 G--TLNTART-----RSTSSVLTETSPY 376
G +LNT T RSTS + P+
Sbjct: 210 GKVSLNTPPTINSSDRSTSYTHEDLFPH 237
>gi|356507955|ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 678
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 242/469 (51%), Gaps = 48/469 (10%)
Query: 85 EILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILS 144
E++ ++L+S Q++L P H S A S FG H +
Sbjct: 238 EVVRKALQSVSQQLLENP------PRDHESLSAKSTGPSSHSFGQFPP------HNHSFA 285
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ--QQEVSFRILCSNDKVGAVIG 202
+ T P ++ SA P + A + RT+ Q+ ++FR+LC ++VG +IG
Sbjct: 286 AQGEPFATGPHDISAFHSA--PPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIG 343
Query: 203 KGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEG 262
KGG II+ +Q E + I V P+ ++ +I ++ PE R SP Q+AV V +R+
Sbjct: 344 KGGAIIKTVQQETVSEIKVLEAPPDSEDCVIVISGPAHPEDRVSPVQEAVFRVQTRIA-- 401
Query: 263 TSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKC 321
K + +++ +L AR +V+SNQ+GCLLGKGG+II+EMRK +G IRI+ D++ KC
Sbjct: 402 ---KPIPDANDHTML--ARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKC 456
Query: 322 ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD 381
SE++ V+Q++GE V +A+ +T RL+ + F + + S S L + P+
Sbjct: 457 ASEDEEVIQVNGEIEAVHEALLQITTRLKHHFFRDSYPSVNYPSNSPFLDQLPPF----- 511
Query: 382 PASFGVH--SSVAVSHDFSQPPLTQGM---DHLGLSHSLDCPSSP------KLWTAQTV- 429
P G S + D PP G D +++ P P K W V
Sbjct: 512 PPYLGRRGLSPPGMYSDLGPPPSHAGFPLDDRPAFLNNIHRPGLPPHISQRKPWGPLGVL 571
Query: 430 TGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGS 489
G G D RG + +S GG + I+T+TTVE++VP V+ +YGE+G
Sbjct: 572 EGGTPIGLPDFPRGPPRRISGFAGGSQ-------PIITSTTVEVVVPRAVVPVIYGEDGE 624
Query: 490 NLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
L ++ QIS A + + +P+ G+ + ++ISGTP++T AAQSL+QAF+++
Sbjct: 625 CLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMS 673
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 129/280 (46%), Gaps = 69/280 (24%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V FR+LC ++G+VIGKGG+II ++ E G + + +P CDER+IT++ S+ Y
Sbjct: 34 VVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKIEEAVPGCDERVITISGSDKEAEEY 93
Query: 246 SPAQ----------------------------------------------------KAVV 253
+ Q KA+
Sbjct: 94 TAEQGKEVNDNDDVGSEGKDGEEKNGSDGNGNEDKEEKDAVPVEDSKSEKGNSAIWKAIS 153
Query: 254 LVFSRLIEGTSE--KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
LVF R++EG E +G D SNK RL++ + QVGC+LGKGG++I M +G I
Sbjct: 154 LVFERMVEGVEETTEG-DEESNKSSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQI 212
Query: 312 RII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN----HFSGTLNTARTRST 366
RI+ D++ C S D +VQISG V+ A+ +V+ +L +N H S L+ T +
Sbjct: 213 RILPKDKVPVCASAFDEIVQISGSVEVVRKALQSVSQQLLENPPRDHES--LSAKSTGPS 270
Query: 367 SSVLTETSP----YSRLKDPASFGVHSSVAVSHDFSQPPL 402
S + P ++ +P + G H +S S PPL
Sbjct: 271 SHSFGQFPPHNHSFAAQGEPFATGPHD---ISAFHSAPPL 307
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/362 (37%), Positives = 200/362 (55%), Gaps = 48/362 (13%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ FRILC ++K+G +IGK I+ LQ E GA I+V +P C+ER+I V+A E P+
Sbjct: 345 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 401
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ+AV + +L + E +S + V RL+V SN VGCLLGKGG IISEM
Sbjct: 402 DLSPAQEAVFHIQDKLRDDGGE-----TSER---VVTRLLVPSNHVGCLLGKGGNIISEM 453
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
R T IR++ +QL C +ND VVQ+ GE +DA+ +T RLR N + R
Sbjct: 454 RNSTRAIIRVLDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANLY-------R 506
Query: 363 TRSTSSVLTETSPYSRLKDPAS-FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
++ S + Y R P S FG+ +S QPP Q P SP
Sbjct: 507 EKTDRS---DDYGYQRSTSPLSNFGLQAS--------QPPGIQ------------APRSP 543
Query: 422 KLWT-AQTVTGVH---LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
W QT G + R +S G S GL+ + L G + S +VT+T +++++PE
Sbjct: 544 PSWLLQQTERGAYNGLPRLTSYAGIERSYGLAGDRSALPTGLTNLS-VVTSTKIDVLIPE 602
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
+V G+NG NL ++ ++SGAKV + + + DR++ ISGTPD+T A+++++AF
Sbjct: 603 VTFSAVLGQNGDNLTQISKMSGAKVTLADGCTATGDRLIEISGTPDQTNIAKTVVEAFAA 662
Query: 538 TG 539
+G
Sbjct: 663 SG 664
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 170/379 (44%), Gaps = 81/379 (21%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE---GPESR 244
FRILC ++G+VIGKGG+II+ L+ + GA I + +P DER+I + A + G +
Sbjct: 62 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 121
Query: 245 Y-----------------------------SPAQKAVVLVFSRLIEGTS-EKGLDFSS-- 272
Y PAQ A+ V SR+++ E LD S
Sbjct: 122 YPAGSGGGSAAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDSV 181
Query: 273 --NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVV 329
+ V R++V NQVGCLLGK G II +MR+ TG+ IRI+ +QL C D VV
Sbjct: 182 EEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVCALPTDEVV 241
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
Q+ G+ VK A+ ++ RL D N + R +S+ +FG
Sbjct: 242 QVVGDRPSVKRALNAISTRLLD-------NPPKDRPSSASFQS----------GNFG-GG 283
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLS 449
S + S+P + Q H L+ + P+ SD G Q L
Sbjct: 284 SRSSGFPASEPYIPQ---HTSLAPQTRLRAEPR---------------SDSGDNGYQLLR 325
Query: 450 HHKGGL-ELGSGSKSAIVTNTTV-EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP 507
GL E G+G + V I+ P IG++ G+ + L++ +GAK+ V +
Sbjct: 326 PTAPGLSEFGTGRHLVPMDEELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDA 382
Query: 508 RLGSTDRIVVISG--TPDE 524
G +R++++S +PD+
Sbjct: 383 VPGCEERVIIVSAVESPDD 401
>gi|356518382|ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 676
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 147/470 (31%), Positives = 235/470 (50%), Gaps = 50/470 (10%)
Query: 85 EILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILS 144
E++ ++L+S Q++L P H S A S FG H S
Sbjct: 236 EVVRKALQSVSQQLLENP------PRDHDSLSAKSTGPSSHSFGQFPP------HNRSFS 283
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKG 204
+ + P ++ SA + + R Q+ ++FR+LC ++VG +IGKG
Sbjct: 284 AQGEPFASGPHDISAFHSAAPLIPKFHEAAIHGRMRPLQEMLTFRLLCPAERVGNIIGKG 343
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
G II+ +Q E + I V P+ ++ +I ++ PE R SP Q+AV V +R+ +
Sbjct: 344 GAIIKTVQQETASEIKVLEAPPDSEDCVIVISGPAHPEDRISPVQEAVFRVQTRIAKPIP 403
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCIS 323
+ K ++ AR +V+S Q+GCLLGKGG+II+EMRK +G IRI+ D++ KC S
Sbjct: 404 DA-------KDHIMLARFLVSSTQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCAS 456
Query: 324 ENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPA 383
E++ V+Q++GE V DA+ +T RL+ + F + + S S L + P+ P
Sbjct: 457 EDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDSYPSVNYPSNSPFLDQLPPF-----PP 511
Query: 384 SFG--------VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP---SSPKLWTAQTVTGV 432
G ++S + H + PL L H P S K W Q +
Sbjct: 512 YLGRRGLSPPRMYSDLGHPHPHAGFPLDDRPPFLNSIHRPGLPPHISERKPWGPQGI--- 568
Query: 433 HLRGSSDVGRGWSQGLSHHKGG----LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENG 488
L G G GL GG + +G I+T+TTVE++VP V+ +YGE+G
Sbjct: 569 -LEG------GIPIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRAVVPVIYGEDG 621
Query: 489 SNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
L ++ QIS A + + +P+ G+ + ++ISGTP++T AAQSL+QAF+++
Sbjct: 622 ECLKQILQISDANITITDPKPGTVETKIIISGTPEQTHAAQSLIQAFVMS 671
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 162/389 (41%), Gaps = 100/389 (25%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V FR+LC ++G VIGKGG+II ++ E G + + +P CDER+IT++ S
Sbjct: 34 VVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLRIEEAVPGCDERVITISGSEKETEED 93
Query: 239 ---------------------------EGPESRY----------------SPAQKAVVLV 255
+G E + S KA+ LV
Sbjct: 94 NTEQGKEVNDNDDGGSEGKDREEKDDGDGNEDKREKDAVPVEDSKSEKGNSAIWKAISLV 153
Query: 256 FSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
F R++EG E D SNK RL++ + QVGC+LGKGG++I M +G IRI+
Sbjct: 154 FERMVEGVEETTEGDEESNKPSSFFLRLLILTAQVGCVLGKGGSVIKRMAAESGAQIRIL 213
Query: 315 -SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--HFSGTLNTARTRSTSSVLT 371
D+L C S +D +VQISG V+ A+ +V+ +L +N +L+ T +S
Sbjct: 214 PKDKLPACASASDEIVQISGSVEVVRKALQSVSQQLLENPPRDHDSLSAKSTGPSSHSFG 273
Query: 372 ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTG 431
+ P++R SF P G + HS P PK A
Sbjct: 274 QFPPHNR-----SFSAQGE----------PFASGPHDISAFHSA-APLIPKFHEA----A 313
Query: 432 VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNL 491
+H G + T ++ P +G++ G+ G+ +
Sbjct: 314 IH--------------------------GRMRPLQEMLTFRLLCPAERVGNIIGKGGAII 347
Query: 492 LRLRQISGAKVIVHEPRLGSTDRIVVISG 520
++Q + +++ V E S D ++VISG
Sbjct: 348 KTVQQETASEIKVLEAPPDSEDCVIVISG 376
>gi|226530329|ref|NP_001151982.1| nucleic acid binding protein [Zea mays]
gi|195651499|gb|ACG45217.1| nucleic acid binding protein [Zea mays]
gi|224029689|gb|ACN33920.1| unknown [Zea mays]
gi|413947861|gb|AFW80510.1| nucleic acid binding protein [Zea mays]
Length = 705
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 204/360 (56%), Gaps = 40/360 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ +SFR+LC DKVG++IGKGG I++ +Q++ G I V T+P+ D+R+I+++ P
Sbjct: 376 ESLSFRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVLDTVPKTDDRIISISGPAHPSD 435
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ A++ V +++ +S+K K RL+V+ NQVGC+LGKGG+II+EM
Sbjct: 436 GISPAQNAILHVQRKIMLPSSDK-------KEGPATCRLIVSGNQVGCVLGKGGSIIAEM 488
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK++G I ++S D++ + + E+D V+QI+G +++A+ VT RLR++ F R
Sbjct: 489 RKLSGAFIVVLSKDKIPRGVPEHDEVIQINGSCEAIQEALMQVTARLRNHLF-------R 541
Query: 363 TRSTSSVLTETSPYSRLKDP--ASF-GVHSSVAVSH-DFSQPPLTQGMDHLGLSHSLDCP 418
R + P+ L DP F G H S ++ H DF + LD
Sbjct: 542 DRMPAVGPNMRPPFGLL-DPQFGPFSGNHESSSLFHKDF-------------MGRPLDGI 587
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
++P WT + + + S V G H + G G G S ++ N T E++VP
Sbjct: 588 AAP--WTVKGMRDL----SDPVSISDIPGAGHREAGGFPGPGQPS-MMPNLTAEVLVPRL 640
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
VI + GE+G L R+R+ S AK+ V EP + D V+ISGTP++ AA+SL++AF+++
Sbjct: 641 VIPVLCGEDGGCLDRIREFSEAKITVAEPTADAMDTAVLISGTPEQMHAARSLVEAFVMS 700
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E D+ L+ PE A KAV LVF R+ EG +E G +S V+ R++V
Sbjct: 182 EKDDPLVAKVTKLEPERVIPLALKAVSLVFDRIFATEGNNETG--NASAASAPVSLRMLV 239
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344
+Q G LLGKGG+++ +M G IR++ D L C ND++ QI+GE V+ +
Sbjct: 240 LYSQAGWLLGKGGSVVKQMAADNGCEIRVLKDNLPSCALLNDKLCQITGEIDSVRKGLNA 299
Query: 345 VT 346
V+
Sbjct: 300 VS 301
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
FRILC K G VIGKGG II ++ E I V P CDER+I +TA+ E
Sbjct: 47 FRILCPASKSGNVIGKGGAIIAKIRQETRMRIRVDRAAPGCDERVIFITAANKDE 101
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 135/377 (35%), Positives = 201/377 (53%), Gaps = 57/377 (15%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+QE+ FR++ N+ VG++IGKGG+ IRALQSE GA I + + + DER++ +TA E +
Sbjct: 247 EQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAITARENSD 306
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPAQ AVV V+SR+ SE +D SS+ ARL+V S +GCLLGKGG+IISE
Sbjct: 307 MLHSPAQDAVVRVYSRI----SEASIDRSSH----TPARLLVPSQHIGCLLGKGGSIISE 358
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD-----NHFSG 356
MRK+TG +IRI ++Q+ +C ND +VQ++G F ++DA+ ++TGR+RD H SG
Sbjct: 359 MRKITGANIRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILPKPHPSG 418
Query: 357 TL-----------NTARTRSTSSVLTETS-----PYSRLKDPASFG-----------VHS 389
+ + +R L + P + A G VHS
Sbjct: 419 GMPPYPPVGNIPVHQSRQEQPPPHLHPSGGMPPYPMHPFRPDAPMGHFEMGDHRPPPVHS 478
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGL- 448
+ D P G++ G L+ PS +T R +S+V R S +
Sbjct: 479 MEYMGADRM--PYLYGVEQGGPRPFLEQPS------PRTCPPEAPRTNSEVPRNMSDAVP 530
Query: 449 --SHHKGGLELGSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505
KG + + ++ + T T T E+I+P N IG V G NGS + + ++SGA + VH
Sbjct: 531 ATDFRKGPVAI----ENQVATPTGTTEVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVH 586
Query: 506 EPRLGSTDRIVVISGTP 522
+P+ G + VVI G P
Sbjct: 587 DPKAGDANSKVVICGDP 603
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 118/298 (39%), Gaps = 61/298 (20%)
Query: 226 PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL-LVNARLVV 284
P DE ++ ++ + P + A +A V +EG G + + V R++
Sbjct: 60 PVGDEAVLVISGPDTPAA----AVRAWEHVVGHRVEGDEAMGGEEEEREVTGAVGCRMLA 115
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAV 342
A QVGC+LGKGG + MR+ G IR+ + QL D ++ ISG FS+V+ A+
Sbjct: 116 AGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHISGSFSQVRKAL 175
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
V+ L+DN T N R FG+ S PP
Sbjct: 176 LAVSTCLQDNPRPDTHNIPIGR-------------------PFGLPGS-----GTGCPP- 210
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG-SSDVGRGWSQGLSHHKGGLELGSGS 461
GMD P S + + + H R S+ G G
Sbjct: 211 --GMD----------PHSQRSYLPPHIPDYHTRNYPSNAGP----------------PGP 242
Query: 462 KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+ +I+ ++GS+ G+ GS + L+ +GA + + EP S +R+V I+
Sbjct: 243 RFFFEQEIVFRMIILNEMVGSIIGKGGSTIRALQSETGACIKILEPVADSDERVVAIT 300
>gi|242055819|ref|XP_002457055.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
gi|241929030|gb|EES02175.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
Length = 716
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 206/365 (56%), Gaps = 49/365 (13%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ +SFR+LC DKVG++IGKGG I++ +Q + G I V T+P+ ++R+I+++ P
Sbjct: 386 ESLSFRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVLDTVPKSEDRIISISGPAHPSD 445
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ A++ V +++ TS+K +G + RL+V++NQVGC+LGKGG+II+EM
Sbjct: 446 GISPAQNAILHVQRKIMLPTSDK------KEGPAI-CRLIVSANQVGCVLGKGGSIIAEM 498
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK++G I ++S D++ + + E+D VVQISG +++A+ +T RLR++ F R
Sbjct: 499 RKLSGAFIIVLSKDKIPRGVPEHDEVVQISGSCEAIQEALMQITARLRNHLF-------R 551
Query: 363 TRSTSSVLTETSPYSRLKDPASFGV----HSSVAVSH-DFSQPPLTQGMDHLGLSHSLDC 417
++ P L D + FG H S ++ H DF + LD
Sbjct: 552 VDRMPAMGPNMRPPFGLLD-SQFGPFAGNHESPSLFHKDF-------------MGRPLDG 597
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWS----QGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S+P WT ++G D+ S G H + G G G S ++ N T E+
Sbjct: 598 ISAP--WT--------VKGMRDLSDPLSISDIPGAGHREAGGFSGPGQPS-MMPNLTAEV 646
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+VP +I ++ E+G L R+R+ S AK+ V EP + D V+ISGTPD+ AA+SL+Q
Sbjct: 647 LVPRLIIPALCSEDGGCLDRIREFSEAKITVAEPIADAMDIPVLISGTPDQMHAARSLVQ 706
Query: 534 AFILT 538
AF+++
Sbjct: 707 AFVMS 711
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 60/120 (50%)
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
E D+ + A PE A KA+ LVF R+ +S V+ RL+V
Sbjct: 193 EKDDPFVAKVAESEPERVIPSALKAISLVFDRIFAAGDNNETGNASAASTPVSLRLLVLY 252
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
+Q G LLGKGG++I +M G IR++ D L C ND++ QI+GE V+ + V+
Sbjct: 253 SQAGWLLGKGGSVIKQMSADNGCEIRVLRDNLPSCALLNDKLCQITGEIDSVRKGLNAVS 312
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 33/59 (55%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
FRILC K G VIGKGG II ++ E I V P CDER+I +TA + E S
Sbjct: 47 FRILCPASKSGNVIGKGGAIIAKIREETRMRIRVDRAAPGCDERVIFITAVDKDEEASS 105
>gi|308080276|ref|NP_001183239.1| hypothetical protein [Zea mays]
gi|238010240|gb|ACR36155.1| unknown [Zea mays]
gi|414884425|tpg|DAA60439.1| TPA: hypothetical protein ZEAMMB73_126154 [Zea mays]
Length = 647
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/379 (34%), Positives = 210/379 (55%), Gaps = 21/379 (5%)
Query: 176 TLDARTQQ-QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
T DA+++ Q+VSFR+L G +IGK G II+ ++ E GA I VGA + C ER+IT
Sbjct: 267 TGDAQSKTLQQVSFRLLLPTYLAGGLIGKKGLIIKGIEVETGACIDVGAPVAGCKERVIT 326
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+ A E P+S Y Q A++L+F R++E + F LV R++V NQ GCL+G
Sbjct: 327 ICALESPDSEYHIVQSALLLIFDRMMEMETNTHSTFEKASQFLV--RVLVLKNQFGCLVG 384
Query: 295 KGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
GG+II EM TG I+I+ D ++ C S + VVQI+GE +++A+ V +LR++
Sbjct: 385 LGGSIIKEMVNTTGARIQILDDTEIPACASTFELVVQITGELMNIRNALSLVFWKLRNHI 444
Query: 354 FSGTLNTARTRSTSSVLTETSPYSR--LKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL 411
FS + + +SS + E++ S+ + + V + V H + PL+ G+D +
Sbjct: 445 FSNETDYNNSHISSSEIAESNATSQANIYSTIQYSVDNGHKVDH---RSPLSYGVDSVEK 501
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVG----RGWSQGLSHH-KGGL------ELGSG 460
S S SS ++ GV + +SD G W+ ++++ G+ L G
Sbjct: 502 SFSDLELSSSEIQKPDNGNGVRIN-NSDSGIQNPSDWNGIVTNNLNDGIISSDENNLVRG 560
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
++ A +T T E V +++ VYG+NGSNL +L ++SGA +IV+ P + ++V+SG
Sbjct: 561 AEHAAITRITYETAVSGSILTLVYGDNGSNLAKLTEVSGADIIVYNPPSEGNEAMIVVSG 620
Query: 521 TPDETQAAQSLLQAFILTG 539
PD+ Q+AQ LL IL G
Sbjct: 621 PPDQAQSAQRLLVELILQG 639
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 206/387 (53%), Gaps = 39/387 (10%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
S + P D + A + ++FR+LCS+DKVG++IGKGG I+ +Q + G I +
Sbjct: 371 SNIPPFPAFPDALMHSHASVPPEPLTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKI 430
Query: 222 GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNAR 281
T+P+ ++R+I ++ P SPAQ A++ V R+ T ++NK +R
Sbjct: 431 LETVPKSEDRVIVISGPAHPGDGISPAQNAILHVQRRITPPT-------ANNKEGAAISR 483
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKD 340
L+V+ NQVGCLLGKGG+II+EMRK++ I ++S D++ K + E+D VVQI+G+ +++
Sbjct: 484 LIVSPNQVGCLLGKGGSIIAEMRKLSKAHIVVLSKDKIPKGVQESDEVVQITGDSEAIQE 543
Query: 341 AVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP 400
A+ +T RLR++ F R R + P+ L DP FG + A SH+ + P
Sbjct: 544 ALMQITARLRNHLF-------RDRMAAMGPNMQPPFGSL-DP-QFG---AFAGSHESTSP 591
Query: 401 ---PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWS----QGLSHHKG 453
P + LD P W A +G DVG S G+ H
Sbjct: 592 RIYPNASQFHKDFMGRPLD--EMPAPWNA--------KGMRDVGDPMSISGMPGMPHRGI 641
Query: 454 GLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
G G+G S + N T +I+VP VI ++ G +G L +R+ SGA + EP + D
Sbjct: 642 GGFSGAGHSS--MPNITRDIMVPRFVIPALCGHDGGCLNMIREFSGAMITFTEPIADAAD 699
Query: 514 RIVVISGTPDETQAAQSLLQAFILTGP 540
+ISGT D+ AA+SL+QAF+L+ P
Sbjct: 700 TPFMISGTLDQMHAARSLIQAFVLSEP 726
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
RILC +K G VIGKGG II ++ E G I V +P CDER+I +T +E
Sbjct: 47 IRILCPTEKCGNVIGKGGVIIAKIRQENGVKIRVDEAVPGCDERVIVITITE 98
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 34/301 (11%)
Query: 223 ATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNA 280
A+ E D+ + PE A++ VF R+ E +E G S + V+
Sbjct: 177 ASKEEKDDPSVAKDTKAEPERVLLSPMNAILHVFDRIFITEIGNESG--DPSGERTPVSF 234
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
RL+V +QVG LLG G++I +M +G IR+ ++L C D + QI+GE V+
Sbjct: 235 RLLVLDSQVGWLLGNRGSVIKQMSADSGCEIRVSKEKLPLCALLKDELCQITGELDSVRK 294
Query: 341 AVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP 400
+ N + L T R + + + S ++ + A + +FS P
Sbjct: 295 GL---------NAVAQVLLTHPPRESDVLPSGLSSHAFNRSDA-----LPPGMQPNFSLP 340
Query: 401 PLTQGMDHL-GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGS 459
QG H G S+D P+ T R + + L H
Sbjct: 341 --FQGPSHARGPFDSID----PRPNIPPFPTFPDQRSNIPPFPAFPDALMHSHA------ 388
Query: 460 GSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
S T ++ + +GS+ G+ G+N+ +++ +G ++ + E S DR++VIS
Sbjct: 389 ---SVPPEPLTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKILETVPKSEDRVIVIS 445
Query: 520 G 520
G
Sbjct: 446 G 446
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 133/357 (37%), Positives = 200/357 (56%), Gaps = 40/357 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ FRILC N K+G+VIG+ G+II++LQ + GA I + +P DER+I ++A+E E
Sbjct: 20 EELVFRILCPNKKIGSVIGRAGSIIKSLQDDIGAKIKITDAVPGSDERIIIISANEVLED 79
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ+A++ + S+++ D +K ++ +L++ SNQ GCLLGKGG IISEM
Sbjct: 80 NLSPAQEALLHIQSQIV--------DLGPDKDGVITTKLLIPSNQTGCLLGKGGAIISEM 131
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK T +IRI+ + L C ++D +VQI G+ + A+ VT RLR + + +
Sbjct: 132 RKQTRANIRILPREDLPPCALDSDEMVQIVGDIRAARAALVQVTSRLR-SFIHREIGISG 190
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
+SS + S RL +P+S G S GL S P
Sbjct: 191 PFLSSSSAPDPSSKRRL-EPSSPGRSYSP------------------GLGFQAGSRSLPD 231
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG-SKSAIVTNTTVEIIVPENVIG 481
W ++ ++G +L + R QG GSG S + +VT TTVE+++PE+ I
Sbjct: 232 AWPSKEISGRNLPEYDE--RATKQGGPK-------GSGISTAGLVTKTTVEVVIPEHAIA 282
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ +G + ++ QISGAKV + E R GS D+++ ISGTP++T AAQ LLQAFIL
Sbjct: 283 PLIANSGKGVAQIAQISGAKVNLLEVRPGS-DKVIEISGTPEQTHAAQGLLQAFILN 338
>gi|255537898|ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 679
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 205/369 (55%), Gaps = 31/369 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++FR+LC ++KVG VIGKGG II+ LQ E G I V + + ++R+I ++ P+ R
Sbjct: 321 LTFRLLCLDEKVGGVIGKGGAIIKTLQQETGCEIKVLEGVSDSEDRIILISGPAHPDDRI 380
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S AQ AV+ V +R+ + L K V RL+V+SNQ+GCLLGKGG I++EMRK
Sbjct: 381 SAAQDAVLRVQTRIA-----RALPLPEGKEKAVIGRLLVSSNQIGCLLGKGGAIMAEMRK 435
Query: 306 VTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
TG IRI+ DQ+ KC SEN+ VVQI+GE V++A+ +T RLR++ F +
Sbjct: 436 STGAYIRILGKDQIPKCASENEEVVQINGEHEVVQEALLQITTRLRNHFFRDVFPSIDHP 495
Query: 365 STSSVLTETSPYS-----RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
S + L + P+ R P HS + DH H++ P
Sbjct: 496 SNPAFLDQAPPFPPYMGRRELSPPFHAFHSFDGMGGPPPPVGFHPHDDHSPFMHNIHRPG 555
Query: 420 SP-----KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE-----LGSGSKSAIVTNT 469
P K W Q + G GL G + G + AI+T+T
Sbjct: 556 MPPHFERKPWGPQGLMEA----------GGPMGLPEFGGHPQRRISGFGGVNHPAIITST 605
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
TVE++VP +V+ +YGE+G+ L ++RQIS AK+ V EP+ G+ + +++ISGTP++T AAQ
Sbjct: 606 TVEVVVPRSVVPVIYGEDGACLKQIRQISDAKITVTEPKPGAAETVIIISGTPEQTHAAQ 665
Query: 530 SLLQAFILT 538
SL+QAF+++
Sbjct: 666 SLIQAFVMS 674
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 102/219 (46%), Gaps = 52/219 (23%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V FRILC K G +IGKGG II ++ E GA + V T+P DER++ + A E
Sbjct: 36 VVFRILCPASKTGGIIGKGGAIISQIRQETGAKVRVEETVPGSDERVVIIAAGSDKEMEV 95
Query: 246 SPA--------------------------------------------------QKAVVLV 255
+ A QKA+VLV
Sbjct: 96 NNAEQNRGDSDDKEPNVGEESNGKQAGSDEDDENKETVSVEHSTKSVRETSSLQKALVLV 155
Query: 256 FSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
F R++E E + K + RL+V S+QVGCLLGKGG++I +M +G IRI+
Sbjct: 156 FERMLEAEPEMDEGNEEKKKPSMSTLRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRIL 215
Query: 315 S-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
D+L C S D +VQI+GE ++ A+ +V +L +N
Sbjct: 216 PRDKLPICASPTDELVQIAGEVDAIRKALQSVAQQLLEN 254
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 20/127 (15%)
Query: 144 SQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDART------QQQEVSFRILCSNDKV 197
S+ +L + P+ +SA + L RV T AR +++ V R+L S++++
Sbjct: 363 SEDRIILISGPAHPDDRISAAQDAVL---RVQTRIARALPLPEGKEKAVIGRLLVSSNQI 419
Query: 198 GAVIGKGGTIIRALQSEAGAFISV--GATMPEC---DERLITVTASEGPESRYSPAQKAV 252
G ++GKGG I+ ++ GA+I + +P+C +E ++ + + Q+A+
Sbjct: 420 GCLLGKGGAIMAEMRKSTGAYIRILGKDQIPKCASENEEVVQINGE------HEVVQEAL 473
Query: 253 VLVFSRL 259
+ + +RL
Sbjct: 474 LQITTRL 480
>gi|297596401|ref|NP_001042525.2| Os01g0235800 [Oryza sativa Japonica Group]
gi|56783855|dbj|BAD81267.1| HEN4 -like [Oryza sativa Japonica Group]
gi|255673037|dbj|BAF04439.2| Os01g0235800 [Oryza sativa Japonica Group]
Length = 449
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 39/365 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ ++FR+LCS+DKVG +IGKGG I+++Q++ G I V T+P+ ++R++ ++ P
Sbjct: 113 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 172
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ A++ V +++ ++ K +G + RL+V+ NQVGCLLGKGG+II+EM
Sbjct: 173 GISPAQNAILHVQRKIVPTSNTK-------EGPAI-CRLIVSPNQVGCLLGKGGSIIAEM 224
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK++G I ++S D++ K + END VVQISG +++A+ +T RLR++ F R
Sbjct: 225 RKLSGAHIIVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLF-------R 277
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG---LSHSLDCPS 419
R S+V P+ L DP FG S A +HD P + + + LD S
Sbjct: 278 DRMASTVPNVQPPFG-LVDP-QFG---SYAGNHDSISPRIFPNVPQFHKDFIGRPLDEMS 332
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWS----QGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
+P WT ++G VG S G++H G G G S IV+ T +++V
Sbjct: 333 AP--WT--------MKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQPS-IVSTITADVMV 381
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P+ V+ S+ GE+G L R+R+ SGAK+ V +P + D ++ISGTPD+ AA+SL+QAF
Sbjct: 382 PKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPDQMHAARSLIQAF 441
Query: 536 ILTGP 540
+L+ P
Sbjct: 442 VLSEP 446
>gi|218187831|gb|EEC70258.1| hypothetical protein OsI_01061 [Oryza sativa Indica Group]
Length = 722
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 39/365 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ ++FR+LCS+DKVG +IGKGG I+++Q++ G I V T+P+ ++R++ ++ P
Sbjct: 386 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 445
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ A++ V +++ ++ K +G + RL+V+ NQVGCLLGKGG+II+EM
Sbjct: 446 GISPAQNAILHVQRKIVPTSNTK-------EGPAI-CRLIVSPNQVGCLLGKGGSIIAEM 497
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK++G I ++S D++ K + END VVQISG +++A+ +T RLR++ F R
Sbjct: 498 RKLSGAHIIVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLF-------R 550
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG---LSHSLDCPS 419
R S+V P+ L DP FG S A +HD P + + + LD S
Sbjct: 551 DRMASTVPNVQPPFG-LVDP-QFG---SYAGNHDSISPRIFPNVPQFHKDFIGRPLDEMS 605
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWS----QGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
+P WT ++G VG S G++H G G G S IV+ T +++V
Sbjct: 606 AP--WT--------MKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQPS-IVSTITADVMV 654
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P+ V+ S+ GE+G L R+R+ SGAK+ V +P + D ++ISGTPD+ AA+SL+QAF
Sbjct: 655 PKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPDQMHAARSLIQAF 714
Query: 536 ILTGP 540
+L+ P
Sbjct: 715 VLSEP 719
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A KA++LVF R+ E G +S + V+ RL+V +QVG LLGK G++I +M +
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
IR+ D+L C D + QI+GE V+ + V
Sbjct: 305 CCEIRVSKDKLPLCALPRDELCQITGELDSVRKGLNTVA 343
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
FRILC K G VIGKGG II ++ E G I V +P CDER+I +TA
Sbjct: 90 FRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITA 139
>gi|222618061|gb|EEE54193.1| hypothetical protein OsJ_01028 [Oryza sativa Japonica Group]
Length = 748
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 39/365 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+ ++FR+LCS+DKVG +IGKGG I+++Q++ G I V T+P+ ++R++ ++ P
Sbjct: 412 EPLTFRLLCSSDKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISGPAHPGD 471
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ A++ V +++ ++ K +G + RL+V+ NQVGCLLGKGG+II+EM
Sbjct: 472 GISPAQNAILHVQRKIVPTSNTK-------EGPAI-CRLIVSPNQVGCLLGKGGSIIAEM 523
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK++G I ++S D++ K + END VVQISG +++A+ +T RLR++ F R
Sbjct: 524 RKLSGAHIIVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLF-------R 576
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG---LSHSLDCPS 419
R S+V P+ L DP FG S A +HD P + + + LD S
Sbjct: 577 DRMASTVPNVQPPFG-LVDP-QFG---SYAGNHDSISPRIFPNVPQFHKDFIGRPLDEMS 631
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWS----QGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
+P WT ++G VG S G++H G G G S IV+ T +++V
Sbjct: 632 AP--WT--------MKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQPS-IVSTITADVMV 680
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P+ V+ S+ GE+G L R+R+ SGAK+ V +P + D ++ISGTPD+ AA+SL+QAF
Sbjct: 681 PKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPDQMHAARSLIQAF 740
Query: 536 ILTGP 540
+L+ P
Sbjct: 741 VLSEP 745
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 5/123 (4%)
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A KA++LVF R+ E G +S + V+ RL+V +QVG LLGK G++I +M +
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-----RDNHFSGTLNTAR 362
IR+ D+L C D + QI+GE V+ + V L +++ G N+
Sbjct: 305 CCEIRVSKDKLPLCALPRDELCQITGELDSVRKGLNTVAQLLFTHPPKESDVLGAHNSGS 364
Query: 363 TRS 365
+RS
Sbjct: 365 SRS 367
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
FRILC K G VIGKGG II ++ E G I V +P CDER+I +TA
Sbjct: 90 FRILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVITA 139
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 128/371 (34%), Positives = 196/371 (52%), Gaps = 47/371 (12%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ FRILC ++K+G +IGK I+ LQ E GA I+V +P C+ER+I V+A E P+
Sbjct: 285 EELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDAVPGCEERVIIVSAVESPDD 341
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SPAQ+AV + +L + E +S + V RL+V SN VGCLLGKGG IISEM
Sbjct: 342 DLSPAQEAVFHIQDKLRDDGGE-----TSER---VVTRLLVPSNHVGCLLGKGGNIISEM 393
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF----SGTL 358
R T IR++ +QL C +ND VVQ+ GE +DA+ +T RLR N + +
Sbjct: 394 RNSTRAIIRVLDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANLYREKTDRSD 453
Query: 359 NTARTRSTSSV----LTETSP--YSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS 412
+ RSTS + L + P + P S+ + + F + LT + L
Sbjct: 454 DYGYQRSTSPLSNFGLQASQPPGIQAPRSPPSWLLQQVLIPPPSF-KSRLTSFLPCLDRK 512
Query: 413 HSLD--------CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
SL C + KLW + G+ W +SH +
Sbjct: 513 RSLQWFATAYKLCWNREKLWLGRRSFGLA---------DWPYQVSHS-------IQRHLS 556
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+VT+T +++++PE +V G+NG NL ++ ++SGAKV + + + DR++ ISGTPD+
Sbjct: 557 VVTSTKIDVLIPEVTFSAVLGQNGDNLTQISKMSGAKVTLADGCTATGDRLIEISGTPDQ 616
Query: 525 TQAAQSLLQAF 535
T A+++++AF
Sbjct: 617 TNIAKTVVEAF 627
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 111/379 (29%), Positives = 170/379 (44%), Gaps = 81/379 (21%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE---GPESR 244
FRILC ++G+VIGKGG+II+ L+ + GA I + +P DER+I + A + G +
Sbjct: 2 FRILCPASRIGSVIGKGGSIIKTLRQQTGAKIKIADAIPGSDERVIIIGAFDAEGGGDED 61
Query: 245 Y-----------------------------SPAQKAVVLVFSRLIEGTS-EKGLDFSS-- 272
Y PAQ A+ V SR+++ E LD S
Sbjct: 62 YPAGSGGGAPAALDKDDRAMDEYTNGRDVACPAQLALFKVHSRILDADKYEDDLDDSDSV 121
Query: 273 --NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVV 329
+ V R++V NQVGCLLGK G II +MR+ TG+ IRI+ +QL C D VV
Sbjct: 122 EEDLSEKVVTRMLVPENQVGCLLGKKGRIIEQMREETGSQIRILPREQLPVCALPTDEVV 181
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
Q+ G+ VK A+ ++ RL D N + R +S+ +FG
Sbjct: 182 QVVGDRPSVKRALNAISTRLLD-------NPPKDRPSSASFQS----------GNFG-GG 223
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLS 449
S + S+P + Q H L+ + P+ SD G Q L
Sbjct: 224 SRSSGFPASEPYIPQ---HTSLAPQTRLRAEPR---------------SDSGDNGYQLLR 265
Query: 450 HHKGGL-ELGSGSKSAIVTNTTV-EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP 507
GL E G+G + V I+ P IG++ G+ + L++ +GAK+ V +
Sbjct: 266 PTAPGLSEFGTGRHLVPMDEELVFRILCPSEKIGNIIGK---FIQTLQEETGAKINVPDA 322
Query: 508 RLGSTDRIVVISG--TPDE 524
G +R++++S +PD+
Sbjct: 323 VPGCEERVIIVSAVESPDD 341
>gi|294462548|gb|ADE76820.1| unknown [Picea sitchensis]
Length = 340
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 199/356 (55%), Gaps = 31/356 (8%)
Query: 190 ILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQ 249
+LC NDK+G VIGKGG+II ++ E GA I V +P+CDER+I V++ E + R SP
Sbjct: 1 MLCRNDKIGGVIGKGGSIINQIRQETGANIKVIDQVPDCDERVIVVSSKEFVDDRISPTL 60
Query: 250 KAVV-LVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
+AV+ L F TSEK ++ K ++ R +V SN +GCLLGKGG+IISEMRK T
Sbjct: 61 EAVLHLQFK-----TSEKSIE--EGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTR 113
Query: 309 TSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTS 367
+IRI+S D + KC EN+ +VQ+ GE ++A+ + RLR N F + + S
Sbjct: 114 ANIRIMSKDNIPKCAGENEELVQVIGEVDVAREALIQIATRLRSNVFKD--QDGGSNAGS 171
Query: 368 SVLTETSPYSRLKDPASFGVHSSV-AVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTA 426
V S Y R + FG + + +S P L L+ +S + +A
Sbjct: 172 VVPPSLSLYGRGVPDSGFGRGDELGSTGRMYSLPSL-----------GLEGTASGRYSSA 220
Query: 427 QTVTGVHLRGSSDVGRGWSQGLSHHK---GGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ ++ G G S + GGL G + +TVE+ +P +GS+
Sbjct: 221 SYGSLGGVQNGGAGGYGSFSSFSTSRAPAGGLPAG-----VAKSGSTVEVTIPNKSVGSI 275
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
G GSN+ ++R+ISGAKV +HE + G TDR+V ISGTP++T AAQSLLQAF ++G
Sbjct: 276 LGRGGSNISQIREISGAKVKLHESKPGGTDRVVEISGTPEQTHAAQSLLQAFAMSG 331
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 174 bits (442), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 192/362 (53%), Gaps = 39/362 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC NDK+G VIGKGG I++++++ GA I V E DER+I V+A+E +
Sbjct: 314 EEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATELADD 373
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
R SP +AV+L+ + T + G ++ R +V S +GCLLGKGG IISEM
Sbjct: 374 RVSPTIEAVLLLQGKTSGTTDKDGA---------ISTRFLVPSKHIGCLLGKGGNIISEM 424
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
RK T +IRI D+ C+SEN+ +VQ++GE KDA+ + RLR+N F +
Sbjct: 425 RKQTRANIRIFRKDERPICVSENEELVQVTGEPGVAKDALIQILKRLRENIFK---DKDG 481
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
+T SVL P S L P++ + SS + D S
Sbjct: 482 ASNTDSVL----PLSSLSVPSAVPLSSSYG-------------------TRKYDIVSPRG 518
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV---EIIVPENV 479
++ G+ G+ G G L + G G + ++ E +P +
Sbjct: 519 AIAGRSAAGLSGFGALQAGTGSYASLQPYAPTRTFGIGLSGGHLNSSLAPSHEFAIPNSA 578
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
+ SV G GSN+ +R+ISGA V + +P G++DR+V ISGTP+++ AAQSL+QAF+LTG
Sbjct: 579 VSSVLGRGGSNISHIREISGATVKLRDPITGASDRVVEISGTPEQSHAAQSLIQAFMLTG 638
Query: 540 PS 541
S
Sbjct: 639 QS 640
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 47/353 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS- 246
+RILC ++ +G+VIGKGG +I++++ E + I V +P DER+I + +S P S+
Sbjct: 44 YRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSS--PLSKDKE 101
Query: 247 --------------PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
PAQ ++ V S +++ +S G D ++K +ARL+VA++Q+G L
Sbjct: 102 KDDDDDDNENEPVCPAQDGLLRVHSVIVQESS--GKDNDADKKRPQDARLLVANSQIGSL 159
Query: 293 LGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GKGG I ++R +G I+I D+L C D +V ISG+ + VK A+Y V+ L
Sbjct: 160 IGKGGNNIQKLRSESGAQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLFK 219
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP---LTQGMDH 408
+ + S +L ET+ SS+ S + PP L QG D
Sbjct: 220 HPPKEQI------PWSVILPETN-------------QSSLPPSGVPTFPPANYLPQG-DS 259
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L H+L S+P L A + G+ G S+ G W + G+ +
Sbjct: 260 LFGHHNL---SAPILGYASRLPGLGGYG-SEAGSAWPLSNPALPSFSKFGNSTTKKTSEE 315
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
++ ++ P + IG V G+ G+ + +R +GA + V + + S +R++V+S T
Sbjct: 316 FSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSAT 368
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
+T I+ P NVIGSV G+ G + +RQ + +K+ V + G +R++VI +P
Sbjct: 41 STVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSP 95
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/343 (36%), Positives = 195/343 (56%), Gaps = 43/343 (12%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++FR+LC +++VG +IGKGGTII+ LQ+E G I V +P+ ++R+I ++ S P+
Sbjct: 332 QDILTFRLLCHDERVGGIIGKGGTIIKNLQNETGCEIKVLDGVPDSEDRVIFISGSAHPD 391
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R SPAQ AV+ V SR++ + +K V ARL+V+S Q+GCLLGKGG II+E
Sbjct: 392 DRISPAQDAVLRVQSRIVRAIPD-------SKEKTVIARLLVSSTQIGCLLGKGGAIIAE 444
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF--SGTLN 359
MRK++G IRI+ DQ+ KC SEN+ VVQI+GEF V++A+ +T RLR +HF + ++N
Sbjct: 445 MRKLSGAHIRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHFRDAFSVN 504
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS-HDF----------------SQPPL 402
+ + + PY ++ + G++S++ S H F + P
Sbjct: 505 HPSNPAFTDQVPPFPPYLARREFSPPGMYSNLGPSFHKFDAVGVLHPHGGFHPHDDRAPF 564
Query: 403 TQGMDHLGL-SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE----- 456
+ LG+ H + S W Q + + G GL+ GG +
Sbjct: 565 MHSIHRLGIPPHIPERKPSSAPWGHQGL----------IEGGVPIGLADFAGGPQRRIPG 614
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISG 499
G G++ AI+T+TTVE++VP +++ S+YGE+G L ++RQ G
Sbjct: 615 FGGGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQEVG 657
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 122/248 (49%), Gaps = 48/248 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP---- 241
V FR+LC K G+VIGKGGTII ++ E G + V T+ CDER++ +T S+
Sbjct: 45 VVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEAD 104
Query: 242 ----------------------------------------ESRYSPAQKAVVLVFSRLIE 261
E S QKA++LVF R+ E
Sbjct: 105 NEQSKEDGEDTKAAEEVSDTKEPGENDEDKESVPVEDSQVEKGISSVQKALLLVFERMAE 164
Query: 262 GTSE-KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLL 319
G SE G D SNK RL+V S+QVGCLLGKGG++I +M +G IRI+ D+L
Sbjct: 165 GESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLP 224
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--HFSGTLNTARTRSTSSVLTETSPYS 377
C S +D +VQI+GE K A+ +++ +L +N ++T T S+S + P S
Sbjct: 225 LCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTNPTGSSSHLFGPPLPRS 284
Query: 378 RLKDPASF 385
+ P ++
Sbjct: 285 EAQPPPNY 292
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 9/69 (13%)
Query: 270 FSSNKGLLVNA-----RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
+S N+ L ++ R++ +++ G ++GKGGTIIS++R+ TG +R + + + C
Sbjct: 32 YSQNQSLKISPGTVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVR-VEETVSGC--- 87
Query: 325 NDRVVQISG 333
++RVV I+G
Sbjct: 88 DERVVLITG 96
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
++ P + GSV G+ G+ + ++RQ +G KV V E G +R+V+I+G+ +T+A
Sbjct: 49 VLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEA 103
>gi|110740181|dbj|BAF01989.1| HEN4 [Arabidopsis thaliana]
Length = 263
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 110/263 (41%), Positives = 142/263 (53%), Gaps = 64/263 (24%)
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTE----------------- 372
QI+GEF V++A++++T RLRD+ FS ++ + +S+S++ TE
Sbjct: 1 QITGEFPNVREAIFHITSRLRDSVFSNSMKNSLAKSSSALTTERFYDRQSDNPLSIGSHQ 60
Query: 373 -----------------------------------TSPYSRLKDPASFGVHSSVAVSHDF 397
T PY R +DP + S SH+F
Sbjct: 61 SVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPDRFNPSAGYSHNF 120
Query: 398 SQPPLTQGMDHLGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
+ MDH SH L + PS +LW + RG SD S GLS + G
Sbjct: 121 GR---RFTMDHSDNSHHLTEAPS--RLWASPPPAAP--RGLSDA----SGGLSSARAGHV 169
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
LGSG KSAIVTNTTVEI VP N + VYGE G NL +LRQISGA+VI+HEP LG++DRI+
Sbjct: 170 LGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRII 229
Query: 517 VISGTPDETQAAQSLLQAFILTG 539
VISGTPD+TQAAQ+LL AFILTG
Sbjct: 230 VISGTPDQTQAAQNLLHAFILTG 252
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 188/363 (51%), Gaps = 45/363 (12%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
++ +E+ R+LC +DK+G VIGKGG+ I++++ +GA I V + DE LI +T +E
Sbjct: 302 SRSEELIIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANFDECLIIITTTES 361
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
P S A +AV+L+ ++ + V+ RL+V S +GC++GK G+II
Sbjct: 362 PSDLKSMAVEAVLLMQGKI-----------NDEDDTTVSIRLLVPSKVIGCIIGKSGSII 410
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
+E+RK T +RI KC ND +V++ G V+DA+ + RLRD+ L
Sbjct: 411 NEIRKRTKADVRISKGDKPKCADANDELVEVGGSVDCVRDALIQIILRLRDD----VLRE 466
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM--DHL---GLSHSL 415
T S+ E S Y P S G+ S ++ H S PP+ M DH G +
Sbjct: 467 RDTGHNPSIGAE-SLY-----PGSAGL-SLPSMMH--SVPPVAAPMVYDHRAESGAGLGM 517
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
PSSP G + GS S + GGL S T+++++
Sbjct: 518 LSPSSPYGGYGSLPMGDNGYGS------MSSYATKLYGGLPPPS----------TLDMLI 561
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P N +G V G+ G+N+ +R+ISGA + + + + DRI +ISGTP++ +AA++L+QAF
Sbjct: 562 PANAVGKVLGKGGANIANIRKISGASIEISDNKSARGDRIALISGTPEQKRAAENLIQAF 621
Query: 536 ILT 538
I+
Sbjct: 622 IMA 624
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/386 (23%), Positives = 163/386 (42%), Gaps = 55/386 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R+ D R + + +RILC ++ +G+VIGK G +I +++ E A + V P +R+
Sbjct: 24 RMTDRDDRGNDELIVYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVDPFPGSKDRV 83
Query: 233 ITVTAS-------------EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
IT+ G E + AQ A++ V + + G D +
Sbjct: 84 ITIYCYVKEKEDVEIDDEFAGKEPLCA-AQDALLKVHVAIANSIAAIG-DSEKKRKDRDE 141
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEF 335
+++V S+Q ++GK G I ++R T +I++ +D C E D V I+GE
Sbjct: 142 CQILVPSSQSANIIGKAGATIKKLRSKTRANIKVTAKDAADPTHSCAMEFDNFVVITGES 201
Query: 336 SKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGVHSSVAVS 394
VK A++ V SS++ + P + D A S+ +
Sbjct: 202 EAVKRALFAV---------------------SSIMYKFGPREDISLDTAVPEAPPSIIIP 240
Query: 395 HDFS-QPP--LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHH 451
D PP L D + ++ P++ A V L+G +D G W +
Sbjct: 241 SDVPVYPPGGLYPASDPIVTPRAV-----PQIIGATNVP--DLQGYADAGNSWPM----Y 289
Query: 452 KGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS 511
L + SG ++ + ++ P + IG V G+ GS + +RQ SGA + V + +
Sbjct: 290 SSALPVVSGVGASRSEELIIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANF 349
Query: 512 TDRIVVISGTPDETQAAQSLLQAFIL 537
+ +++I+ T + ++A +L
Sbjct: 350 DECLIIITTTESPSDLKSMAVEAVLL 375
>gi|297806983|ref|XP_002871375.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
gi|297317212|gb|EFH47634.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 124/178 (69%), Gaps = 7/178 (3%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D+ +Q+V +ILCS +++G VIG G IR LQSE GAFI++G+ +CDE L T+TA
Sbjct: 267 DSEDNKQQVVLKILCSKERIGRVIGNGRATIRDLQSETGAFITLGSNRLDCDEGLFTITA 326
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--VNARLVVASNQVGCLLGK 295
SE P ++ SP+Q+A+VLVFS++ E T+ K LD GL + ARLVV SNQ+ CL+G+
Sbjct: 327 SEDPNAKNSPSQRALVLVFSKMYENTTAKVLD----SGLTSSITARLVVRSNQINCLMGE 382
Query: 296 GGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G I S +++ TG I +++ +Q KC+SEN+++VQISG F VK+A+ VT LR++
Sbjct: 383 EGHIKSTIQQRTGAFITVLNVEQNPKCVSENNQIVQISGAFPNVKEAINQVTSMLRED 440
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V FRIL +VG VIGK G +IR L+ + I V + R+IT+ A G SR
Sbjct: 24 VLFRILGHVSQVGDVIGKDGRVIRQLKESTNSQIWVEKAPLDSLYRVITIIADVGSTSRV 83
Query: 246 ------------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNAR 281
S AQ A++ VF + L+ V++R
Sbjct: 84 KLGVIVNNASNRKKEEVQEQEVEVSRAQGALIRVF---------EALNVRFGTSSTVSSR 134
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L++ + V ++GKGG ++ +RK TG ++ I L C +D +V+I G VK
Sbjct: 135 LLMEACHVVTVIGKGGELMEMIRKETGCNVEICQYNLPSCADPDDVMVKIEGNVFAVKKV 194
Query: 342 VYNVTGRLR 350
+ +++ RL+
Sbjct: 195 LVSISSRLQ 203
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 187/363 (51%), Gaps = 46/363 (12%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
T + E+ R+LC DK+G VIGKGG+ I++++ +GA I V T + DE +ITV A+E
Sbjct: 301 TSRSELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATES 360
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
P+ S A +A++L+ ++ + ++ +V R +V S +GC++GK G I+
Sbjct: 361 PDDLKSMAVEAILLLQGKINDEDND-----------IVGIRFLVPSKVIGCIIGKSGAIV 409
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF---SGT 357
+E+RK T + I LKC ND +V+++GE V+DA+ + RLRD+ G
Sbjct: 410 NEIRKRTNADVCISKVDKLKCADSNDELVEVAGEVGSVRDALVQIVLRLRDDVLKEKDGG 469
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPLT-QGMDHLGLSHSL 415
LN SSV T++ + VH+ +++ S PP+ G D S S
Sbjct: 470 LN-------SSVGTDSV----------YPVHAGISIPSILPSVPPVAPMGYDQRAESGSG 512
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
++ G G + G S LS GL S T+E++V
Sbjct: 513 ---LGLFSSSSLYGYGSLPMGENSYGSLASYSLSKLYEGLPPPS----------TLEMLV 559
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P N +G V G+ G+N+ +R+ISGA + + + + DRI ISG P++ QAA++L+QAF
Sbjct: 560 PANAVGKVIGKGGANIANIRKISGAMIEISDAKSARGDRIAYISGKPEQKQAAENLIQAF 619
Query: 536 ILT 538
I+
Sbjct: 620 IMA 622
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 89/371 (23%), Positives = 163/371 (43%), Gaps = 57/371 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR- 244
V +RILC ++ +G+VIGK G +I ++++E+ A + V P R+IT+ + +
Sbjct: 36 VVYRILCPDEVIGSVIGKSGKVINSIRNESRARVKVVDPFPGAMYRVITIYCNVKEKGDA 95
Query: 245 -----------YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
PAQ A++ V + + + G D +++V ++Q ++
Sbjct: 96 DVDDDFHQADPLCPAQDALLKVHAAISNAVAALG-DSDKRCRDKKECQILVPTSQSANII 154
Query: 294 GKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
GK G I ++R T +I+I SD C + D + I+GE VK A++ V+ +
Sbjct: 155 GKAGATIKKLRSKTRANIKITAKDASDPTHSCAMDFDNFLLITGESEAVKKALFAVSAIM 214
Query: 350 RDNHFSGT----LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG 405
FS L T + S++ + + P F ++ VS S PP+
Sbjct: 215 Y--KFSPKEEIPLETTVPEAPPSIIISSD--VPIYQPGGFYPNADPIVSS-RSVPPI--- 266
Query: 406 MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
LG +H P +G D+ W S G+ S+S +
Sbjct: 267 ---LGATH---IP--------------EFQGYGDMRSSWPIYSSTVPVVPSFGNTSRSEL 306
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT--PD 523
+ + ++ P + IG V G+ GS + +RQ+SGA++ V + + + I+ + T PD
Sbjct: 307 I----IRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITVIATESPD 362
Query: 524 E--TQAAQSLL 532
+ + A +++L
Sbjct: 363 DLKSMAVEAIL 373
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 40/365 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASE 239
++ +++ +++CS+ K+G VIGKGG+ I+ ++ +G+ I V + D+ +ITVTA+E
Sbjct: 311 SKSEKLVIKVICSSSKIGRVIGKGGSTIKGIRQASGSHIEVNDSRANHDDDCVITVTATE 370
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ S A +AV+L+ ++ + EK V +L+V S +GC++GK G+I
Sbjct: 371 SPDDLKSMAVEAVLLLQEKINDEDEEK-----------VKMQLLVPSKVIGCIIGKSGSI 419
Query: 300 ISEMRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS--- 355
ISE+RK T +I I + KC ND +V+ISGE S V+DA+ + RLRD+
Sbjct: 420 ISEIRKRTKANIHISKGNNKPKCADPNDELVEISGEVSDVRDALIQIVLRLRDDVLRDRE 479
Query: 356 -GTLNTARTRS-TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
G+ N RS ++ + S + L P+SF S DF + P T G S
Sbjct: 480 IGSRNQPPARSENNNFFSSGSSNTGLALPSSFMSSVPQVASVDFDRRPET------GSSM 533
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S+ PSS G++ GS VG S + L G + +TT+E+
Sbjct: 534 SM-LPSS---------GGLYGYGSFPVGNNSYGSKSSYSSNLYGG------LPQSTTMEV 577
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P N +G V G G NL +R+ISGA + + + + RI +ISGTP++ + A++L Q
Sbjct: 578 RIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRIALISGTPEQKRTAENLFQ 637
Query: 534 AFILT 538
AFI++
Sbjct: 638 AFIMS 642
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 163/376 (43%), Gaps = 75/376 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V +RILC + +G+VIGK G +I ++ E A I V P C ER+IT+ S
Sbjct: 43 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVTEKKDI 102
Query: 239 ---EGPESRYS----PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGC 291
E E YS AQ A++ V ++ + + ++ + RL+V S+Q
Sbjct: 103 IDIEHSELNYSIPLCSAQDALLKVHDAIVASLATAAENTKIDRDDIRECRLLVPSSQCSN 162
Query: 292 LLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
++GK G+II ++R T ++++ +SD C + D +V ISGE VK A++ V
Sbjct: 163 VIGKSGSIIKKIRSRTRANVKVVSKDVSDPSHTCAMDFDNIVLISGESESVKKALFAV-- 220
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGVHSSVAVSHDFSQPPLTQGM 406
S+++ + SP ++ D V +S+ + D S P QG
Sbjct: 221 -------------------SAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYP--QG- 258
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG------------LSHHKGG 454
GL + D P V+ G+ G G S + H GG
Sbjct: 259 ---GLYPNQD----PIFQHGANVS--SFIGTLPQGYGESAANPMPVFSASALPVVHGFGG 309
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
SKS +++I + IG V G+ GS + +RQ SG+ + V++ R D
Sbjct: 310 -----SSKS---EKLVIKVICSSSKIGRVIGKGGSTIKGIRQASGSHIEVNDSRANHDDD 361
Query: 515 IVVI---SGTPDETQA 527
V+ + +PD+ ++
Sbjct: 362 CVITVTATESPDDLKS 377
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 186/378 (49%), Gaps = 63/378 (16%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V++L A +Q +E+ R+LC +DK+G +IGKGG I+ ++ +GA I V + DE LI
Sbjct: 301 VSSLGA-SQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKARHDECLI 359
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
T+TA+E S A +AV+L+ ++ + V+ RL+V S +GC++
Sbjct: 360 TITATESTSDLKSVAVEAVLLLQEKI-----------NDEDDAPVSIRLLVPSKVIGCII 408
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G+ G II+E+RK T I+I K +ND +V++ GE V+DA+ + RLR++
Sbjct: 409 GRSGAIINEIRKRTKADIQISRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLRED- 467
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
VL + G S A S S PP+ +
Sbjct: 468 ---------------VLKNKD----IDHNRHIGSESLYASSSVLSAPPMLSSIP------ 502
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHH----KGGLELGSGSKSAIVTN- 468
++P L Q R S G G SH+ + G GS S+ TN
Sbjct: 503 ----ATAPALAYDQ-------RTGSGTGLGMHSSRSHYGYDSYSMEDNGYGSMSSYATNL 551
Query: 469 ---------TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+T+E++VP N +G V G+ G+NL +R+ISGA V + E + DR+ +IS
Sbjct: 552 YEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALIS 611
Query: 520 GTPDETQAAQSLLQAFIL 537
GT +E +AA++L+QAFI+
Sbjct: 612 GTSEEKRAAENLIQAFIM 629
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 165/387 (42%), Gaps = 57/387 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
RV D R + + +++RILC N+ +G+VIGK G +I +++ E+ A + V P R+
Sbjct: 29 RVNDRDERDKGELIAYRILCPNEVIGSVIGKNGKVINSIRQESRAKVKVVDPFPGAKHRV 88
Query: 233 ITV------------TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
IT+ E AQ A++ V S I + E D +
Sbjct: 89 ITIFCHVKNKEEIEIEDEFDNEKPLCAAQDALIKVHS-AISNSIETAGDSEKKRKNKDEC 147
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEFS 336
+++V S+Q L+GK G I ++R T T+I+++ +D C E D V + GE
Sbjct: 148 QILVPSSQSAILIGKAGATIKQLRVKTRTNIKVVPKDAADPEHSCAMEFDNFVLV-GESE 206
Query: 337 KVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGV----HSSVA 392
VK A++ V S+++ + SP + P V HS +
Sbjct: 207 AVKRALFAV---------------------STIMYKFSPKEDI--PLDTTVPETPHSIII 243
Query: 393 VSHDFSQPP--LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH 450
S PP L D + S P+L A T+ +H G +D G W S
Sbjct: 244 PSELPIYPPGGLYPASDPIVQPRSF-----PQLIGATTMQDLH-GGYADTGNTWPLYSSP 297
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
LG+ ++ V ++ P + IG + G+ G + R+RQ SGA++ V + +
Sbjct: 298 LPVVSSLGASQSEELI----VRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEVDDSKAR 353
Query: 511 STDRIVVISGTPDETQAAQSLLQAFIL 537
+ ++ I+ T + ++A +L
Sbjct: 354 HDECLITITATESTSDLKSVAVEAVLL 380
>gi|225455340|ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 197/387 (50%), Gaps = 43/387 (11%)
Query: 157 SISYVSAVRPLSLESDRVATLDARTQ--QQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
S S+ S +LES D Q +++ FRILC DKV V+G+ II LQ+E
Sbjct: 307 SNSFASRTSGYTLESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNE 366
Query: 215 AGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK 274
G + V + +E++I +T+ EGP+ PAQ+A++ + +R++ + +K
Sbjct: 367 IGVDVKVADHVAGSNEQIIVITSEEGPDDELFPAQEALLHIQTRIV--------NLLPDK 418
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISG 333
++ RL+V S+++GC G+ ++ SEMR++TG +I+I+ +QL IS D +++I G
Sbjct: 419 ENVITTRLLVPSSEIGCFEGRDCSL-SEMRRLTGANIQIVPREQLPAFISGTDELLEIVG 477
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD--PASFGVHSSV 391
E +DA+ VT RLR S + E P KD P S S+
Sbjct: 478 EIKAARDALVEVTSRLR----------------SYLYREFFP----KDMPPPSISAPGSL 517
Query: 392 AVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHH 451
S + P +G H+ P + Q + V + S D G + + +
Sbjct: 518 EASSPNNITPAREG-------HTASDPPTTNYQNVQAIASV--QPSKDSGGTGGETVKQN 568
Query: 452 KGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS 511
+ + + +VT +T+E+++PE+ + + + + L ++ + SGA V + E RL +
Sbjct: 569 ETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEA 628
Query: 512 TDRIVVISGTPDETQAAQSLLQAFILT 538
T +I+ ISGTP++T+ AQSLLQ FIL+
Sbjct: 629 TGKIIQISGTPEQTEKAQSLLQGFILS 655
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 178/368 (48%), Gaps = 53/368 (14%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+RILC + K G VIGK G+II++++ GA+I+V +P +ER+I + T PE R
Sbjct: 68 SYRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGR 127
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-----------VNARLVVASNQVG 290
+SPAQ+A+ ++ R++E + G F N V R+VV+ VG
Sbjct: 128 MPQFSPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVG 187
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+ G+ + VK+A+ N++ R
Sbjct: 188 CLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSR 247
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
LR++ R RS ++SP R P D+S M++
Sbjct: 248 LRESQH-------RDRSHFHGRIQSSP-ERFFPP-----------DDDYSH------MNN 282
Query: 409 LGLSHSLDCPSSPKLWTAQTVTG-VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+D S + ++ TG V R +S R + G + G + ++ +
Sbjct: 283 APRRMPIDGNS----FGSRVSTGLVGTRSNSFASR--TSGYTLESGAAPIADNAQQFLGE 336
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS---GTPDE 524
+ I+ P + + V GE+ + L+ G V V + GS ++I+VI+ G DE
Sbjct: 337 DIVFRILCPVDKVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDE 396
Query: 525 TQAAQSLL 532
AQ L
Sbjct: 397 LFPAQEAL 404
>gi|297821485|ref|XP_002878625.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297324464|gb|EFH54884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 633
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 191/373 (51%), Gaps = 35/373 (9%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V F+I+ ++ G +IGK GTIIRALQ+E GA IS+GA + ER++T++A E E
Sbjct: 274 ERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISIGAPLKVSGERVVTISARENLE 333
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SRYS AQ A+ LVF+R +E EKGL + G +V +L+V S L+G G E
Sbjct: 334 SRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAVVKTKLLVPSQFANSLVGNGN---RE 390
Query: 303 MRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF-SGTLNT 360
TG + I + +Q+L+ ISEN+ V++I GE+ V+ A+ +V+ +LR+N L
Sbjct: 391 AIIATGADVHIPVDNQILEWISENEVVIEIKGEYGHVQKALTHVSSKLRENLLPKKVLGE 450
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
R R ++PY + + S S ++ G + + S
Sbjct: 451 MRARV-------SNPYESAGTSQIYNLKQSQQNSSRGDSLSVSDGEQNFKMVR-----SG 498
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWS-------QGLSHHKGGLELGSG----------SKS 463
++ +V + D +G++ L+ L++ K
Sbjct: 499 AEVMKLNSVMHTEVLKEVDELKGFTLPQSLLEDDLTQEMKQLQMSRNGDVSSLPQRRGKG 558
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V T+E+ V ++ +GS+YG +G+ + LRQISGA V V +P G +++ISG P+
Sbjct: 559 VYVRKITLELTVEKDALGSLYGRDGTGVDNLRQISGAGVDVKDP-TGIEATVLIISGNPE 617
Query: 524 ETQAAQSLLQAFI 536
+T+ A SL+++ +
Sbjct: 618 QTRTAMSLIESIL 630
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 37/197 (18%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
E + R++C +G +IG G ++ L+ E G I + + D ++ + S
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNKS 83
Query: 239 ----------EGPESR------YSPAQKAVVLVFSRLIEGTSEK-------GLDFSSNKG 275
G E S AQ A++ V R + K G D + G
Sbjct: 84 VLLTDRVGDFSGGEHEDWVTCDVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCG 143
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
+L + NQ+G +LG GG + MR+ +G IR++ + C + D ++QI+G+
Sbjct: 144 ILAD------RNQIGAVLGLGGKNVEWMRRSSGAMIRVLPPPI--CGTNTDELIQITGDV 195
Query: 336 SKVKDAVYNVTGRLRDN 352
VK A+ V+ ++DN
Sbjct: 196 LAVKKALVMVSTCIQDN 212
>gi|224135123|ref|XP_002321989.1| predicted protein [Populus trichocarpa]
gi|222868985|gb|EEF06116.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 215/444 (48%), Gaps = 59/444 (13%)
Query: 121 ETQHR----LFGAVS--QEILPDLHVDILSQRNSVLTTAPS-----SSISYVS---AVRP 166
E+QHR G V + L D +V ++ R S + PS S +Y + + R
Sbjct: 269 ESQHRDRSHFHGRVQSPERFLDDDYVPHMNTRRSSMDGPPSFGSRLSGPNYRNNNYSSRA 328
Query: 167 LSLESDRVATLDARTQQ----QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222
D A +A + Q +++ FRILC DKV V+G+ ++ LQ+E G + V
Sbjct: 329 PGFPVDAGADPNADSAQPFYVEDLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVA 388
Query: 223 ATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARL 282
+ DE++IT+ + EGP+ PAQ+A++ + +R++ D ++K ++ RL
Sbjct: 389 DPVSGSDEQIITICSEEGPDDELFPAQEALLHIQTRIV--------DLVADKDNIITTRL 440
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC-ISENDRVVQISGEFSKVKDA 341
+V S+++GCL G+ G+ +SEM +TG +I I+ ++L +S D +VQI GE +DA
Sbjct: 441 LVPSSEIGCLEGRDGS-LSEMESLTGATIEILPKEMLPTYLSGTDELVQIQGEVKAARDA 499
Query: 342 VYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP 401
+ VT RLR + + S+ P G + + + P
Sbjct: 500 LVEVTSRLRSYLYKDVFQKDLPPTVSA-------------PGPAGTAGGLQAASSNNPTP 546
Query: 402 LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWS-----QGLSHHKGGLE 456
+G HS P + T Q V S RG S Q S H+ L
Sbjct: 547 AREG-------HSGGDPPA----TYQNVQSASTPQPSKDARGSSAETVKQNESEHREDLP 595
Query: 457 LGSGSK--SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
+ ++ +VT + +E+++PE + + ++ + L ++ ++SGA V + E R T++
Sbjct: 596 PPTMNRIPVTLVTRSILEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTEK 655
Query: 515 IVVISGTPDETQAAQSLLQAFILT 538
I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 656 IIQISGTPEQAERAQSLLQGFILS 679
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 176/368 (47%), Gaps = 58/368 (15%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+RILC + K G VIGK G+II++++ GA+I+V +P +ER+I + T PE R
Sbjct: 87 SYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGR 146
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL-----------DFSSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ L+ R++E + G+ ++ G V RLVV+ VG
Sbjct: 147 MPSFSPAQEALFLIHDRILENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVVSRMHVG 206
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+ G+ + VK+AV ++ R
Sbjct: 207 CLLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSVSEEIVQVIGDVNAVKNAVAIISSR 266
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
LR++ R RS + R++ P F + D+ + H
Sbjct: 267 LRESQH-------RDRSHF--------HGRVQSPERF-------LDDDY--------VPH 296
Query: 409 LGLSH-SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+ S+D P S ++G + R ++ R + G G ++ V
Sbjct: 297 MNTRRSSMDGPPS----FGSRLSGPNYRNNNYSSR--APGFPVDAGADPNADSAQPFYVE 350
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI---SGTPDE 524
+ I+ P + + V GE+ + L+ G V V +P GS ++I+ I G DE
Sbjct: 351 DLVFRILCPIDKVNRVVGESDGLVDLLQNEIGVDVKVADPVSGSDEQIITICSEEGPDDE 410
Query: 525 TQAAQSLL 532
AQ L
Sbjct: 411 LFPAQEAL 418
>gi|302143921|emb|CBI23026.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 197/387 (50%), Gaps = 43/387 (11%)
Query: 157 SISYVSAVRPLSLESDRVATLDARTQ--QQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
S S+ S +LES D Q +++ FRILC DKV V+G+ II LQ+E
Sbjct: 221 SNSFASRTSGYTLESGAAPIADNAQQFLGEDIVFRILCPVDKVECVVGESDGIIELLQNE 280
Query: 215 AGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK 274
G + V + +E++I +T+ EGP+ PAQ+A++ + +R++ + +K
Sbjct: 281 IGVDVKVADHVAGSNEQIIVITSEEGPDDELFPAQEALLHIQTRIV--------NLLPDK 332
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISG 333
++ RL+V S+++GC G+ ++ SEMR++TG +I+I+ +QL IS D +++I G
Sbjct: 333 ENVITTRLLVPSSEIGCFEGRDCSL-SEMRRLTGANIQIVPREQLPAFISGTDELLEIVG 391
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD--PASFGVHSSV 391
E +DA+ VT RLR S + E P KD P S S+
Sbjct: 392 EIKAARDALVEVTSRLR----------------SYLYREFFP----KDMPPPSISAPGSL 431
Query: 392 AVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHH 451
S + P +G H+ P + Q + V + S D G + + +
Sbjct: 432 EASSPNNITPAREG-------HTASDPPTTNYQNVQAIASV--QPSKDSGGTGGETVKQN 482
Query: 452 KGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS 511
+ + + +VT +T+E+++PE+ + + + + L ++ + SGA V + E RL +
Sbjct: 483 ETVPSVLNRIPVTLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEA 542
Query: 512 TDRIVVISGTPDETQAAQSLLQAFILT 538
T +I+ ISGTP++T+ AQSLLQ FIL+
Sbjct: 543 TGKIIQISGTPEQTEKAQSLLQGFILS 569
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 175/357 (49%), Gaps = 54/357 (15%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+RILC + K G VIGK G+II++++ GA+I+V +P +ER+I + T PE R
Sbjct: 5 SYRILCHDVKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGR 64
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+SPAQ+A+ ++ R++E S+ G +VV+ VGCLLGKGG II
Sbjct: 65 MPQFSPAQEALFMIHDRILE----------SDAGF--GNGMVVSRMHVGCLLGKGGKIIE 112
Query: 302 EMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
+MR T T IRI+ L +C+S ++ +VQ+ G+ + VK+A+ N++ RLR++
Sbjct: 113 QMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRESQH----- 167
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
R RS ++SP R P D+S M++ +D S
Sbjct: 168 --RDRSHFHGRIQSSP-ERFFPP-----------DDDYSH------MNNAPRRMPIDGNS 207
Query: 420 SPKLWTAQTVTG-VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
+ ++ TG V R +S R + G + G + ++ + + I+ P +
Sbjct: 208 ----FGSRVSTGLVGTRSNSFASR--TSGYTLESGAAPIADNAQQFLGEDIVFRILCPVD 261
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS---GTPDETQAAQSLL 532
+ V GE+ + L+ G V V + GS ++I+VI+ G DE AQ L
Sbjct: 262 KVECVVGESDGIIELLQNEIGVDVKVADHVAGSNEQIIVITSEEGPDDELFPAQEAL 318
>gi|30681758|ref|NP_850026.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|330252232|gb|AEC07326.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 632
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 190/398 (47%), Gaps = 86/398 (21%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V F+I+ ++ G +IGK GTIIRALQ+E GA ISVGA + ER++TV+A E E
Sbjct: 274 ERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLE 333
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SRYS AQ A+ LVF+R +E EKGL + G +V +L+V S+ G G E
Sbjct: 334 SRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGN---RE 390
Query: 303 MRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--------- 352
TG + I + +Q+L+ ISEN+ V++I GE+S V+ A+ +V+ +LR+N
Sbjct: 391 AIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGE 450
Query: 353 ---HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG--------------VHSSVAVSH 395
S +A RS L + + D S V S +V H
Sbjct: 451 MRARVSNPYESAGGRSQIYNLQPSQQDASRGDSLSVSAAVPDLKMVRSGAEVLKSNSVMH 510
Query: 396 -----------DFSQP------PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSS 438
DF+ P LTQGM L +S + D S P
Sbjct: 511 TEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPR--------------- 555
Query: 439 DVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQIS 498
SK V T+E+ V ++ +GS+YG +G+ + L+QIS
Sbjct: 556 ----------------------SKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQIS 593
Query: 499 GAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
GA V V +P T+ V+ISG P++ + A SL+++ +
Sbjct: 594 GANVDVKDPT--GTEATVLISGNPEQARTAMSLIESIL 629
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 37/197 (18%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
E + R++C +G +IG G ++ L+ E G I + + D ++ + S
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQS 83
Query: 239 ----------EGPE------SRYSPAQKAVVLVFSRLIEGTSEK-------GLDFSSNKG 275
G E S AQ A++ V R + K G D + G
Sbjct: 84 ILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCG 143
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
+L + NQ+G +LG GG + MR+ +G IR++ + C ++ND ++QI+G+
Sbjct: 144 ILAD------RNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPI--CGTKNDELIQITGDV 195
Query: 336 SKVKDAVYNVTGRLRDN 352
VK A+ V+ +++N
Sbjct: 196 LAVKKALVMVSSYIQNN 212
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 40/365 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASE 239
++ ++++ +++CS+ K+G VIGKGG I+ ++ +G+ I V + D+ +ITVTA+E
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ S A +AV+L+ ++ + +K V +L+V+S +GC++GK G+I
Sbjct: 372 SPDDLKSMAVEAVLLLQEKINDEDEDK-----------VKMQLLVSSKVIGCIIGKSGSI 420
Query: 300 ISEMRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF---- 354
ISE+RK T I I + KC ND +V+ISGE S V+DA+ + RLRD+
Sbjct: 421 ISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Query: 355 SGTLNTARTRS-TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+G+ N RS ++ + +S + L P SF S DF++ P T G S
Sbjct: 481 TGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPET------GSSM 534
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S+ PSS G++ GS VG S + L G + +TT+E+
Sbjct: 535 SM-LPSS---------GGIYGYGSFPVGNTSYGSNSSYSSNLYGG------LPQSTTMEV 578
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P N +G V G G NL +R+ISGA + + + + R+ +ISGT ++ + A++L Q
Sbjct: 579 RIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQ 638
Query: 534 AFILT 538
AFI++
Sbjct: 639 AFIMS 643
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 63/370 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V +RILC + +G+VIGK G +I ++ E A I V P C ER+IT+ S
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 239 ---EGPESRYS----PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGC 291
E E YS AQ A++ V ++ + + ++ RL+V S+Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 292 LLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
++GK G+II +R T ++++ +SD C + D +V ISGE VK A++ V
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAV-- 221
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-------KDPASFGVHSSVAVSHDFSQP 400
S+++ + SP ++ + PAS + S +++ + Q
Sbjct: 222 -------------------SAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSI---YPQA 259
Query: 401 PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
L D + H + S + T G + V + + H GG
Sbjct: 260 GLYPSQDSI-FQHGANVSSF--IGTLPQGYGENAANPVPVFSASALPVVHGFGG------ 310
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI-- 518
S+ +++I + IG V G+ G + +RQ SG+ + V++ R D V+
Sbjct: 311 --SSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVT 368
Query: 519 -SGTPDETQA 527
+ +PD+ ++
Sbjct: 369 ATESPDDLKS 378
>gi|4314357|gb|AAD15568.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 649
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 128/406 (31%), Positives = 194/406 (47%), Gaps = 85/406 (20%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+++V F+I+ ++ G +IGK GTIIRALQ+E GA ISVGA + ER++TV+A E E
Sbjct: 274 ERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLE 333
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SRYS AQ A+ LVF+R +E EKGL + G +V +L+V S+ G G E
Sbjct: 334 SRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGN---RE 390
Query: 303 MRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--------- 352
TG + I + +Q+L+ ISEN+ V++I GE+S V+ A+ +V+ +LR+N
Sbjct: 391 AIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGE 450
Query: 353 ---HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS--------------- 394
S +A RS L + S P S++VS
Sbjct: 451 MRARVSNPYESAGGRSQIYNLQPSQQPSNSIKPQDASRGDSLSVSAAVPDLKMVRSGAEV 510
Query: 395 ------------------HDFSQP------PLTQGMDHLGLSHSLDCPSSPKLWTAQTVT 430
+DF+ P LTQGM L +S + D S P ++V
Sbjct: 511 LKSNSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLP----PRSVL 566
Query: 431 GVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
R SK V T+E+ V ++ +GS+YG +G+
Sbjct: 567 AKQQR------------------------RSKGVSVRKITLELAVEKDALGSLYGRDGTG 602
Query: 491 LLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ L+QISGA V V +P T+ V+ISG P++ + A SL+++ +
Sbjct: 603 VDNLQQISGANVDVKDPT--GTEATVLISGNPEQARTAMSLIESIL 646
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 37/197 (18%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
E + R++C +G +IG G ++ L+ E G I + + D ++ + S
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQS 83
Query: 239 ----------EGPE------SRYSPAQKAVVLVFSRLIEGTSEK-------GLDFSSNKG 275
G E S AQ A++ V R + K G D + G
Sbjct: 84 ILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCG 143
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
+L + NQ+G +LG GG + MR+ +G IR++ + C ++ND ++QI+G+
Sbjct: 144 ILAD------RNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPI--CGTKNDELIQITGDV 195
Query: 336 SKVKDAVYNVTGRLRDN 352
VK A+ V+ +++N
Sbjct: 196 LAVKKALVMVSSYIQNN 212
>gi|357117002|ref|XP_003560265.1| PREDICTED: uncharacterized protein LOC100827626 [Brachypodium
distachyon]
Length = 656
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 120/382 (31%), Positives = 189/382 (49%), Gaps = 45/382 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q++SFR+LC + G +IGK G II+ ++E GA I VG C ER+IT++A E P
Sbjct: 279 QQISFRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESP-G 337
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
++S Q A++ +F R+ E E+ L F + +AR++V +Q L+G GG II EM
Sbjct: 338 KHSKVQSAILCIFDRMEE--VERNLMFGKPE---CSARVLVPKSQFSSLVGLGGAIIKEM 392
Query: 304 RKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
K TG I I+ + + C S +RV+QI+G V+DA++ V+ +LR++ FS
Sbjct: 393 VKSTGARIEILDEMDVPACASNCERVLQITGNLVNVRDALFVVSEKLRNHAFSSKCTKHD 452
Query: 363 T-RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQ--------GMDHLGLSH 413
+T+S + E++ S + +S +S+ +P + Q HLG
Sbjct: 453 DGNATASDIIEST-ASMTVNISSTDNYSTDNFPRTDHEPSVIQMESLENSFSAFHLGSPG 511
Query: 414 SLDCPS-----------------SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGL- 455
SL+ S P + +TGV D R +S G+
Sbjct: 512 SLELESLANAEDTGIINLKNEGQKPPNRSCAVITGVQKPADGDDDR-----ISKSNHGIT 566
Query: 456 -----ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
+L K +VT T EI + +Y + G+NL +LRQI+GA + V++P
Sbjct: 567 SPDENQLMRVMKDPVVTRMTYEIAACGGIFCLLYRDKGNNLAQLRQITGADISVYDPPPE 626
Query: 511 STDRIVVISGTPDETQAAQSLL 532
++D +VISGTPD+ Q A + L
Sbjct: 627 TSDCSIVISGTPDQAQLALAAL 648
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 127/317 (40%), Gaps = 38/317 (11%)
Query: 90 SLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSV 149
+LE P++ R V P S R EA S + L + +QE L + VD+ + V
Sbjct: 76 ALEGYPEDAASRVAVVLGPTSPTRPVEASSSSSGEPLQLSPAQEALVSV-VDVGGVLHRV 134
Query: 150 LTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRI----------LCSNDKVGA 199
+ AP +S + V LE+ TL+A + R+ + S +V
Sbjct: 135 VARAP-EFVSCLVLVEAAGLEALGRGTLEAIASETNAELRVTSLAEGATPSVHSPKEVIE 193
Query: 200 VIGKGGTIIRA-------LQSEAGAF-ISVGATMPECDERLITVTASEGPESRYSPAQKA 251
+ G TI +A LQ + A ++ T P + +SE PE Y
Sbjct: 194 ITGDRTTIRKAIVALSSYLQGDLHACSLTTSVTTP---SPMFPWKSSEVPEPNYGDLHSG 250
Query: 252 VVLVFSRL----IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
V + + I+ + + + ++ RL+ N G L+GK G II T
Sbjct: 251 VSTKCANINVPWIDCPQDVAGNVETENLQQISFRLLCHVNLAGGLIGKKGMIIKGFETET 310
Query: 308 GTSIRIISDQLLKCISENDRVVQIS-----GEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
G SI + + C+ +RV+ IS G+ SKV+ A+ + R+ + L +
Sbjct: 311 GASID-VGNPFSGCM---ERVITISALESPGKHSKVQSAILCIFDRMEE--VERNLMFGK 364
Query: 363 TRSTSSVLTETSPYSRL 379
++ VL S +S L
Sbjct: 365 PECSARVLVPKSQFSSL 381
>gi|388500506|gb|AFK38319.1| unknown [Lotus japonicus]
Length = 437
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 113/365 (30%), Positives = 184/365 (50%), Gaps = 52/365 (14%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
+Q +E+ R+LC ++K+G VIG+GG+ I++++ +G I V + DE LI +T +E
Sbjct: 115 SQSEELIIRMLCPSNKIGRVIGRGGSTIKSMRQASGTRIEVDDSKANHDECLIIITTTES 174
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
P S A +AV+L+ ++ S V+ +L+V S +GC++GK G+II
Sbjct: 175 PSDLKSMAVEAVLLIQGKI-----------SDEDDTEVSIQLLVPSKVIGCIIGKSGSII 223
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
+E+RK T IRI KC ND +V++ G V+DA+ + RLRD+
Sbjct: 224 NEIRKRTRADIRISKGDKPKCADVNDELVEVGGAIDCVRDALIQIILRLRDDVL------ 277
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
R R T +P + G S + +S PP+ + + D
Sbjct: 278 -RERDTG------------HNP-TIGGESLYSGGAAYSLPPMLPSVSSVAAPMVYD---- 319
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN--------TTVE 472
A++ TG+ + SS G E G GS S+ T +T++
Sbjct: 320 ---QRAESATGMGMLSSSS-----LYGYGSLSQMWESGYGSISSYPTKLYGSLPPPSTLD 371
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
I++P N +G V G+ G+N+ +R+ISGA + + + R DRI +ISGTP+E +AA++L+
Sbjct: 372 ILIPANAVGKVLGKGGANIANIRKISGATIEISDAR-ARGDRIALISGTPEEKRAAENLI 430
Query: 533 QAFIL 537
QAFI+
Sbjct: 431 QAFIM 435
>gi|297740744|emb|CBI30926.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 188/357 (52%), Gaps = 37/357 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
++ +E+ R+LC DK+G VIG+GG+ I++++ +GA + V T + DE LITVT++E
Sbjct: 114 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 173
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+ S A +AV+L+ +++ + + V RL+V S +GC++GK G+II
Sbjct: 174 VDDLKSMAVEAVLLLQAKINDEDDDT-----------VAIRLLVPSKIIGCIIGKSGSII 222
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
+E+RK T +RI + KC ND ++++ GE V+DA+ + RLRD+ L
Sbjct: 223 NEIRKRTRADVRISKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDD----ALKD 278
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
T +S T+ S A V S + S PP+ LS+ +
Sbjct: 279 RDTGHNTSAGTD----SLYSGGAGLSVSSVLP-----SAPPVAP------LSYDQRAETG 323
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
+ + ++ GS VG +S + L G + T +T ++++P N +
Sbjct: 324 -SGLGLLSSSSLYGYGSLSVGENAYGSMSSYSSKLYGG------LPTPSTFDMVIPANAV 376
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
G V G+ G+N+ +R+ISGA + + + + DR+ +ISGTP++ + A++L+QAFI+
Sbjct: 377 GKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKRTAENLIQAFIM 433
>gi|225443912|ref|XP_002278367.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
Length = 623
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/357 (30%), Positives = 190/357 (53%), Gaps = 37/357 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
++ +E+ R+LC DK+G VIG+GG+ I++++ +GA + V T + DE LITVT++E
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+ S A +AV+L+ +++ + + V RL+V S +GC++GK G+II
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDT-----------VAIRLLVPSKIIGCIIGKSGSII 410
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
+E+RK T +RI + KC ND ++++ GE V+DA+ + RLRD+ L
Sbjct: 411 NEIRKRTRADVRISKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDD----ALKD 466
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
T +S T+ S YS A V S + S PP+ LS+ +
Sbjct: 467 RDTGHNTSAGTD-SLYS---GGAGLSVSSVLP-----SAPPVAP------LSYDQRAETG 511
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
+ + ++ GS VG +S + L G + T +T ++++P N +
Sbjct: 512 -SGLGLLSSSSLYGYGSLSVGENAYGSMSSYSSKLYGG------LPTPSTFDMVIPANAV 564
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
G V G+ G+N+ +R+ISGA + + + + DR+ +ISGTP++ + A++L+QAFI+
Sbjct: 565 GKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKRTAENLIQAFIM 621
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 49/387 (12%)
Query: 169 LESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC 228
++ RV D + + + +RILC + +G+VIGK G +I +++ + A I V P
Sbjct: 20 IQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIRQDTRAKIKVVDPFPGA 79
Query: 229 DERLITVTASE------------GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFS-SNKG 275
+R+IT+ + PAQ A++ V + ++ + L+ S K
Sbjct: 80 KDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIVNAVAS--LENSDKKKK 137
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS----DQLLKCISENDRVVQI 331
+++V S+Q ++GK G I +R T +I+I + D C E D V I
Sbjct: 138 DKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAKDSTDPSHSCAMEFDNFVLI 197
Query: 332 SGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGVHSS 390
+G+ VK A++ + S+++ + +P + D S
Sbjct: 198 AGDSEAVKKALFAI---------------------SAIMYKFTPREEIPLDTTVPEAPPS 236
Query: 391 VAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH 450
+ + D P G + + S P + A V L+G SD+G W
Sbjct: 237 IIIPSDV--PIYPAGGFYPSADSIVSARSVPPVLAATHVP--ELQGYSDMGSTWPV---- 288
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
+ L + SG ++ + ++ P + IG V G GS++ +R+ SGA V V + +
Sbjct: 289 YSSNLPVVSGYGASRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKAD 348
Query: 511 STDRIVVISGTPDETQAAQSLLQAFIL 537
+ ++ ++ T ++A +L
Sbjct: 349 RDECLITVTSTESVDDLKSMAVEAVLL 375
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 183/356 (51%), Gaps = 38/356 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ R+LC D +G VIGKGG I++++ +GA + V T +CDE +IT+++ E +
Sbjct: 306 EELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDD 365
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
S A + V+L+ ++ + ++G V RL++ S +GC++GK G+II+E+
Sbjct: 366 LKSMAVETVLLLQEKI-----------NDDEGGTVIMRLLIPSKVIGCIIGKSGSIINEI 414
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
RK T IRI LKC S +D +V+++G+ V+DA+ + RLRD+ L
Sbjct: 415 RKSTRADIRISKGDKLKCASSSDELVEVTGKVGCVRDALVQIVLRLRDD----ALKERDV 470
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
S+++T++ S + S P ++ G +G + S +
Sbjct: 471 GHNSAIVTDSM------------YSSGSSFSMPSVLPSVSPGAPPMGYDQRAESGSGLGV 518
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHH-KGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
++ + G D G G+ S GGL +++E+++P N G
Sbjct: 519 LSSSGLYGSGSLSMGDNGYGYMSSYSSKLYGGLP----------PPSSLEMLIPANAAGK 568
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
V G+ G+N+ +R+ISGA + + + + DRI +ISGT ++ + A++L+QAFI+
Sbjct: 569 VIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQKRTAENLIQAFIMA 624
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 155/369 (42%), Gaps = 55/369 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R+ D + V +RILC ++ +G+VIGK G +I +++ E A I V P +R+
Sbjct: 23 RITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVDPFPGAKDRV 82
Query: 233 IT----VTASEGPE--------SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
IT V E E AQ A++ V + + + G D +
Sbjct: 83 ITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHAAIANALASAG-DLDRKQRDKEQC 141
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFS 336
++++ S+Q ++GK G+ I ++R T TSI+I +D + C + D I+GE
Sbjct: 142 QILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDATDPIHSCAMDFDNFAVIAGEPE 201
Query: 337 KVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSS---VAV 393
V+ A++ + SS++ + P + P V+ + + +
Sbjct: 202 GVRRALFAI---------------------SSIMYKFPPREEI--PLDTNVNEAPPNIII 238
Query: 394 SHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGW---SQGLSH 450
D P + G + L S P + AQ V +H S G W S L
Sbjct: 239 PSDV--PLYSAGGLYPSADPILPPRSIPPMLGAQHVQDLHDYPES--GNAWPLYSSSLPV 294
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
GG+ S+ + V ++ P + IG V G+ G + +RQ SGA+V V + +
Sbjct: 295 VPGGISGHPPSEELV-----VRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRD 349
Query: 511 STDRIVVIS 519
+ I+ IS
Sbjct: 350 CDECIITIS 358
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 193/365 (52%), Gaps = 40/365 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASE 239
++ ++++ +++C++ K+G VIGKGG I+ ++ +G+ I V + D+ +ITVTA+E
Sbjct: 312 SRSEKLAIKVICASSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ S A +AV+L+ ++ + +K V +L+V+S +GC++GK G+I
Sbjct: 372 SPDDLKSMAVEAVLLLQEKINDEDEDK-----------VKMQLLVSSKVIGCIIGKSGSI 420
Query: 300 ISEMRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF---- 354
ISE+RK T I I + K ND +V+ISGE S V+DA+ + RLRD+
Sbjct: 421 ISEIRKRTKADIHISKGNNTPKSADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Query: 355 SGTLNTARTRS-TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+G+ N RS ++ + +S + L P SF S DF + P T G S
Sbjct: 481 TGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFDRRPET------GSSM 534
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S+ PSS G++ GS VG S + L G + +TT+E+
Sbjct: 535 SM-LPSS---------GGIYGYGSFPVGNTSYGSNSSYSSNLYGG------LPQSTTMEV 578
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P N +G V G G NL +R+ISGA + + + + R+ +ISGT ++ + A++L Q
Sbjct: 579 RIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQ 638
Query: 534 AFILT 538
AFI++
Sbjct: 639 AFIMS 643
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 63/370 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V +RILC + +G+VIGK G +I ++ E A I V P C ER+IT+ S
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 239 ---EGPESRYS----PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGC 291
E E YS AQ A++ V ++ + + ++ RL+V S+Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 292 LLGKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
++GK G+II +R T +++++ SD C + D +V ISGE VK A++ V
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDASDPSHTCAMDFDNIVMISGETESVKKALFAV-- 221
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-------KDPASFGVHSSVAVSHDFSQP 400
S+++ + SP ++ + PAS + S +++ + Q
Sbjct: 222 -------------------SAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSI---YPQA 259
Query: 401 PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
L D + H + S + T G + V + + H GG
Sbjct: 260 GLYPSQDSI-FQHGANVSSF--IGTLPQGYGENAANPLPVFSASALPVVHGFGG------ 310
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI-- 518
S+ +++I + IG V G+ G + +RQ SG+ + V++ R D V+
Sbjct: 311 --SSRSEKLAIKVICASSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVT 368
Query: 519 -SGTPDETQA 527
+ +PD+ ++
Sbjct: 369 ATESPDDLKS 378
>gi|255561850|ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 704
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 110/367 (29%), Positives = 178/367 (48%), Gaps = 53/367 (14%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+RILC + K G VIGK GTII++++ GA+I+V +P +ER+I + T PE R
Sbjct: 76 SYRILCHDMKAGGVIGKSGTIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGR 135
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGLDFS-----------SNKGLLVNARLVVASNQVG 290
+SPAQ+A+ L+ R++E + G+ ++ +N V RLVV+ VG
Sbjct: 136 MPAFSPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVG 195
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+ G+ + VK+A+ ++ R
Sbjct: 196 CLLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVNAVKNAIAIISSR 255
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
LR++ R RS + + R+ P F F M++
Sbjct: 256 LRESQH-------RDRSHGNF------HGRMHSPERF-----------FPDDDYVPHMNN 291
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
G S+D PS +G + R S+ R + + + G + ++ +
Sbjct: 292 TGRRSSIDGPS-----FGSRASGPNYRNSNYSSRQYGYNV---EAGAPVADSAQPFYGDD 343
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS---GTPDET 525
++ P + + V GE+ L L+ G V V +P GS +++++IS G DE
Sbjct: 344 LVFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSDPVSGSDEQMIIISSEEGPDDEL 403
Query: 526 QAAQSLL 532
AQ L
Sbjct: 404 FPAQEAL 410
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 101/167 (60%), Gaps = 10/167 (5%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ FR+LC DKV V+G+ I+ LQ++ G + V + DE++I +++ EGP+
Sbjct: 343 DLVFRMLCPADKVNKVVGESDGILDLLQNDIGVDVKVSDPVSGSDEQMIIISSEEGPDDE 402
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+A++ + + +I D + ++ +L+V+S ++GCL G+ G+ +SEM
Sbjct: 403 LFPAQEALLHIQTHII--------DLVPDSDNIIKTKLIVSSGEIGCLEGRDGS-LSEME 453
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++TG I+I+ ++L C+SE D +VQI GE +DA+ VT RLR
Sbjct: 454 RLTGAKIQILPREKLPACVSEADELVQIEGEIKAARDALVEVTSRLR 500
Score = 45.1 bits (105), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+SGA V + E R T++I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 595 LSGANVTLLEDRPEVTEKIIQISGTPEQVERAQSLLQGFILS 636
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+ E+ FR+LC +DK+G+VIGKGG+II L+ + GA I + +P DER+I V+A E P
Sbjct: 257 ENELVFRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKIANAVPGSDERVIIVSALELPG 316
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+SPA +A++ V SR+ T+E G D K ++ RL+V +NQ+GCLLGKGG+II +
Sbjct: 317 DSFSPALEAMIQVQSRI---TAEMGGD----KDGIITTRLLVPTNQIGCLLGKGGSIIED 369
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR+ T +IR++ D L +C + D +VQI G+ + ++A++ V RLR+N F
Sbjct: 370 MRRATRANIRVLPKDTLPRCALDTDELVQIVGDTTVAREALFQVISRLRNNAF 422
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 170/349 (48%), Gaps = 54/349 (15%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
+V FRILC K+G+VIGKGG+II+ L+ E+GA I + +P DER+I ++++
Sbjct: 2 DVVFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISSTDRGNDR 61
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK---GLLVNARLVVASNQVGC 291
+G +PAQ+A+ V +R+I G+D S + V RL+V +NQ+GC
Sbjct: 62 GRGKDGNSEELTPAQEALFKVHARIIADVETSGIDGSDQEEEPSQQVVTRLLVPNNQIGC 121
Query: 292 LLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
LLGKGG II +MR+ TG IR++ DQL C D +VQ+SG+ S +K A+ ++ RL+
Sbjct: 122 LLGKGGKIIEQMRQTTGAQIRVLPKDQLPGCALPTDELVQVSGDVSTLKKALLFISARLQ 181
Query: 351 DNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG 410
+ N R R S + + + D + + S H F P
Sbjct: 182 E-------NPPRDRPQSYAAPAPA-FVPVTDYLAKDSYRSKGTGHVFGLGPE-------- 225
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
P + WT + G+ + R Q K G + G
Sbjct: 226 -------PLEGRSWTISS-------GNLSLDR---QDNRRSKEGRDSGE-------NELV 261
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
++ P + IGSV G+ GS + LR+ +GA++ + GS +R++++S
Sbjct: 262 FRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKIANAVPGSDERVIIVS 310
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
+ I+ P IGSV G+ GS + LRQ SGAK+ + + G +R+++IS T
Sbjct: 2 DVVFRILCPAPKIGSVIGKGGSIIKTLRQESGAKIKIADAIPGVDERVILISST 55
>gi|326490983|dbj|BAK05591.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 47/360 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E+ FRILC NDK +++G II LQ+E G + + + DER + +T+ EGP+
Sbjct: 362 EIIFRILCPNDKAISLVGSRDGIIDMLQAEVGVDVRLTDLIAGSDERTLIITSREGPDHE 421
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+A++ + + ++ D +K ++ RL+V S+++ C G+ G++ S+++
Sbjct: 422 LFPAQEALLHIQTFIV--------DLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQ 472
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +++I+ ++L C E+D ++QI GE ++A+ VT +LR
Sbjct: 473 RQTSANVQILPREELPSCALESDELIQIVGEIRAARNALMQVTTKLR------------- 519
Query: 364 RSTSSVLTETSPYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
+ Y + P G VH S++ + + GL D P
Sbjct: 520 ---------SYIYREMPAPIQIGGINVHGSISPAKGSPR----------GLYAGNDLPMP 560
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI--VTNTTVEIIVPEN 478
Q T H + S G + S + + + A+ VT +T+E+++P++
Sbjct: 561 IYQQAPQMATSWHSKDSGLSASGSFEQGSSINDDMRQSNTKRYAVPLVTRSTLEVVIPQS 620
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ S+ GS L ++ ++SGA V + E R G T+++V ISGTP++ AQSLLQ FIL+
Sbjct: 621 AVASLSMRAGSKLAQISEMSGASVTLAEERPGVTEKVVRISGTPEQADKAQSLLQGFILS 680
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 101/185 (54%), Gaps = 20/185 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI-----TVTAS 238
Q SFRILC K G + I Q ++GA I++ P R+I T+ +
Sbjct: 107 QTTSFRILCPESKA---YGFPASFINNAQDDSGAIITIHPPFPGDPVRVIETADGTLREA 163
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF---------SSNKGLLVNARLVVASNQV 289
+G +SPAQ+A+++V R++E + G + + ++G V RL+V V
Sbjct: 164 DGRPPMFSPAQEALLMVHRRILETQPDDGDEDGEYGPRGKDARDRGK-VTTRLIVPRQHV 222
Query: 290 GCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
GCLLGKGG II +MR T T IRI+ + +C+S +++VVQ+ GE + VK AV ++
Sbjct: 223 GCLLGKGGKIIEQMRSETKTHIRILPREQNMPRCLSLSEKVVQVVGEGNNVKKAVAIISD 282
Query: 348 RLRDN 352
RL+++
Sbjct: 283 RLKES 287
>gi|8809595|dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 193/357 (54%), Gaps = 35/357 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ F+ILC DK+ V+G+ II LQ+E G + V + DE++IT+++ E P+
Sbjct: 323 EELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDD 382
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ PAQ+A++ + +++I D +K L+ RL+V S CL GK G++ SE+
Sbjct: 383 PFFPAQEALLHIQTQII--------DLIPDKDNLITTRLLVPSRDSICLEGKAGSV-SEI 433
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++TGTS++I++ +++ +C S ND V+QI+GE ++A+ +T LR +H L+
Sbjct: 434 SRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLR-SHMFKELSQKE 492
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
T S+ + T P + GV VA S++ Q S + P+S
Sbjct: 493 TPPAST--STTGPLEGVA-----GVME-VASSNNTIQ--------------SREGPTSSN 530
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA-IVTNTTVEIIVPENVIG 481
L Q V+ + + G G S H+ + + + + +VT +T+E+++PE V+
Sbjct: 531 L-NLQQVSTILPQFKEGFGSVAKAGESEHREEVPVTTSRMAVPLVTRSTLEVVLPEAVVP 589
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ ++ + L ++ + SGA V + E R T I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 590 KLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILS 646
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 18/185 (9%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--EGPESR 244
++RILC + K G VIGK GTII++++ GA+I+V +P ER+I ++ + P+ R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL---------DF--SSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ V R++E ++ G D+ G V RLVV+ VG
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQI GE + VK+A+ V+ R
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSR 248
Query: 349 LRDNH 353
LR++
Sbjct: 249 LRESQ 253
>gi|30696273|ref|NP_200118.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|30725478|gb|AAP37761.1| At5g53060 [Arabidopsis thaliana]
gi|332008915|gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 652
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 193/357 (54%), Gaps = 35/357 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ F+ILC DK+ V+G+ II LQ+E G + V + DE++IT+++ E P+
Sbjct: 323 EELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDD 382
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ PAQ+A++ + +++I D +K L+ RL+V S CL GK G++ SE+
Sbjct: 383 PFFPAQEALLHIQTQII--------DLIPDKDNLITTRLLVPSRDSICLEGKAGSV-SEI 433
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++TGTS++I++ +++ +C S ND V+QI+GE ++A+ +T LR +H L+
Sbjct: 434 SRLTGTSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLR-SHMFKELSQKE 492
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
T S+ + T P + GV VA S++ Q S + P+S
Sbjct: 493 TPPAST--STTGPLEGVA-----GVME-VASSNNTIQ--------------SREGPTSSN 530
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA-IVTNTTVEIIVPENVIG 481
L Q V+ + + G G S H+ + + + + +VT +T+E+++PE V+
Sbjct: 531 L-NLQQVSTILPQFKEGFGSVAKAGESEHREEVPVTTSRMAVPLVTRSTLEVVLPEAVVP 589
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ ++ + L ++ + SGA V + E R T I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 590 KLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLLQGFILS 646
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 110/185 (59%), Gaps = 18/185 (9%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--EGPESR 244
++RILC + K G VIGK GTII++++ GA+I+V +P ER+I ++ + P+ R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL---------DF--SSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ V R++E ++ G D+ G V RLVV+ VG
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQI GE + VK+A+ V+ R
Sbjct: 189 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSR 248
Query: 349 LRDNH 353
LR++
Sbjct: 249 LRESQ 253
>gi|54290950|dbj|BAD61631.1| putative HEN4 [Oryza sativa Japonica Group]
Length = 662
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 182/360 (50%), Gaps = 49/360 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ FRILC +DKV +++G ++ LQ + G I + ++ DER+I +T+ EGP+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+A++ + + ++ D +K ++ RL+V S+++ C G+ G++ S+++
Sbjct: 398 LFPAQEALLHLQTHIV--------DLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQ 448
Query: 305 KVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +++I+ Q L C E+D ++QI GE +DA+ +T +LR ++F
Sbjct: 449 RQTSANVQILPRQALPSCALESDELIQIVGEIRAARDALVQITAKLR-SYF--------- 498
Query: 364 RSTSSVLTETSPYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
Y + P G VH S++ + + P QG D
Sbjct: 499 ------------YREIPGPNQLGNITVHGSISPAKGSPRGPY-QGSDI----------PM 535
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI--VTNTTVEIIVPEN 478
P AQ V + QG S+ + + + A+ VT +T+E+++P++
Sbjct: 536 PSYQQAQHVPASWKDSGGGANMSFEQG-SNINDDMRQSAAKRFAVPLVTRSTLEVVIPKS 594
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ S+ GS L ++ ++SGA V + + R + +++V ISGTP++ AQSLLQ FIL+
Sbjct: 595 AVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQADKAQSLLQGFILS 654
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 26/200 (13%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGP 241
SFRILC KV G + I ++ + A +++ P R+I + ++G
Sbjct: 86 SFRILCPQSKV---YGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGR 142
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDF---------SSNKGLLVNARLVVASNQVGCL 292
+SPAQ+A+++V R++E + G + + ++G V RL+V VGCL
Sbjct: 143 PPSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGK-VTTRLIVPRLHVGCL 201
Query: 293 LGKGGTIISEMRKVTGTSIRIIS-DQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
LGKGG II +MR T T IRI+ DQ +C+S ++ VVQ+ GE + VK AV ++ RL+
Sbjct: 202 LGKGGKIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 351 DN------HFSGTLNTARTR 364
++ F G +N+ R
Sbjct: 262 ESLHRDRGPFRGRMNSPEHR 281
>gi|297792661|ref|XP_002864215.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
gi|297310050|gb|EFH40474.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/357 (29%), Positives = 190/357 (53%), Gaps = 35/357 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ F+ILC DK+ V+G+ I+ LQ+E G + V + DE++IT+++ E P+
Sbjct: 323 EELVFQILCPADKIVRVVGESQGILDLLQNEIGVDVRVSDPVTGSDEQIITISSEEAPDD 382
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ PAQ+A++ + +++I D +K L+ RL+V+S CL GK G++ SE+
Sbjct: 383 PFFPAQEALLHIQTQII--------DLLPDKDNLITTRLLVSSRDSVCLEGKAGSV-SEI 433
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++TGTS++I++ +++ +C S ND V+QI+G+ +DA+ +T LR +H L+
Sbjct: 434 SRLTGTSVQILAREEIPRCASINDVVIQITGDIRAARDALVELTLLLR-SHMFKELSQKE 492
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
T S+ + T P GV + V+ + +G+ L K
Sbjct: 493 TPPAST--STTGPLE--------GVAGVMEVASSNNTIQSREGLTGSNL----------K 532
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA-IVTNTTVEIIVPENVIG 481
L T+ G V + G S H+ + + + + +VT +T+E+++PE V+
Sbjct: 533 LQQTSTILPQFKEGFGSVAKA---GESEHREEVPVTTSRMAVPLVTRSTLEVVLPEAVVP 589
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ ++ + L ++ + SGA V + E R T I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 590 KLVTKSRNKLAQISEWSGASVTLVEDRPEETQNIIRISGTPEQAERAQSLLQGFILS 646
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 18/185 (9%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--EGPESR 244
++RILC + K G VIGK GTII++++ GA+I+V +P ER+I ++ + P+ R
Sbjct: 70 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDVERIIEISDNRRRDPDGR 129
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL---------DF--SSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ V R++E + G D+ G V RLVV+ VG
Sbjct: 130 MPSFSPAQEALFNVHDRILESEPQFGYGGAQPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 189
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQI GE S VK+A+ V+ R
Sbjct: 190 CLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELSAVKNALLIVSSR 249
Query: 349 LRDNH 353
LR++
Sbjct: 250 LRESQ 254
>gi|125555220|gb|EAZ00826.1| hypothetical protein OsI_22856 [Oryza sativa Indica Group]
Length = 693
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 182/360 (50%), Gaps = 49/360 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ FRILC +DKV +++G ++ LQ + G I + ++ DER+I +T+ EGP+
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREGPDHE 397
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+A++ + + ++ D +K ++ RL+V S+++ C G+ G++ S+++
Sbjct: 398 LFPAQEALLHLQTHIV--------DLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQ 448
Query: 305 KVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +++I+ Q L C E+D ++QI GE +DA+ +T +LR ++F
Sbjct: 449 RQTSANVQILPRQALPSCALESDELIQIVGEIRAARDALVQITAKLR-SYF--------- 498
Query: 364 RSTSSVLTETSPYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
Y + P G VH S++ + + P QG D
Sbjct: 499 ------------YREIPGPNQLGNITVHGSISPAKGSPRGPY-QGSDI----------PM 535
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI--VTNTTVEIIVPEN 478
P AQ V + QG S+ + + + A+ VT +T+E+++P++
Sbjct: 536 PSYQQAQHVPASWKDSGGGANMSFEQG-SNINDDMRQSAAKRFAVPLVTRSTLEVVIPKS 594
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ S+ GS L ++ ++SGA V + + R + +++V ISGTP++ AQSLLQ FIL+
Sbjct: 595 AVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQADKAQSLLQGFILS 654
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 105/200 (52%), Gaps = 26/200 (13%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGP 241
SFRILC KV G + I ++ + A +++ P R+I + ++G
Sbjct: 86 SFRILCPQSKV---YGFPPSFIAKVRDDTNAVVTIHLPYPGDAVRVIETSDGARREADGR 142
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDF---------SSNKGLLVNARLVVASNQVGCL 292
+SPAQ+A+++V R++E + G + + ++G V RL+V VGCL
Sbjct: 143 PPSFSPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGK-VTTRLIVPRLHVGCL 201
Query: 293 LGKGGTIISEMRKVTGTSIRIIS-DQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
LGKGG II +MR T T IRI+ DQ +C+S ++ VVQ+ GE + VK AV ++ RL+
Sbjct: 202 LGKGGKIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLK 261
Query: 351 DN------HFSGTLNTARTR 364
++ F G +N+ R
Sbjct: 262 ESLHRDRGPFRGRMNSPEHR 281
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 179/357 (50%), Gaps = 46/357 (12%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
R++C DK+G VIGKGG I++++ E+GA I V + +E +ITVT++E + S
Sbjct: 315 LRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREESIITVTSTEATDDVKSA 374
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A +AV+L+ +++ +G ++ ++ RL+V N +GCL+GKGG+I+++MR +
Sbjct: 375 AVEAVLLLQAKINDGIEDR-----------MHIRLLVPGNVIGCLIGKGGSIVNDMRNKS 423
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL---NTARTR 364
I I + S +D +V++ GE K++DA+ + RLR++ ++ N+ +
Sbjct: 424 KAIIHISKGSKPRRASSSDELVEVFGEVDKLRDALVQIVLRLREDVLKDSVERQNSDKDG 483
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP---PLTQGMDHLGLSHSLDCPSSP 421
+ +TE S +FS P P T+ + L +
Sbjct: 484 KRTIAITEP------------------MYSSNFSMPALLPSTRQVSPLSYDQRGEVERGL 525
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
++ + + D G G + SKS +E+I+P + +
Sbjct: 526 DVYPRSSSYRYSSLQAVDDGYGAHSSYT-----------SKSYGGRRPDIEMIIPASGLS 574
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
V G+ G+NL +R+ISGA + + E + D + ISGTP++ Q+A++L++AFI++
Sbjct: 575 KVIGKRGTNLDNIRKISGADIEIIESKSSRHDHVAHISGTPEQRQSAENLIRAFIMS 631
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 92/193 (47%), Gaps = 25/193 (12%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V T + + + V +RILC + +G+VIGK G +I +++ + A + V P D+R+I
Sbjct: 27 VHTQENSSNDELVVYRILCPDKVIGSVIGKNGKVINSIRQQTNAKVKVVDPYPGADKRVI 86
Query: 234 TVTA---------------SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV 278
V + AQ A++ V ++E + ++ S+
Sbjct: 87 LVYCHVHHRDLTHRDIDVDDDDDREPVCAAQNALLKVHDAIVEALA---INSDSDDE--- 140
Query: 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGE 334
A ++V ++Q ++GK G++I +R ++ +SI++ S+ C D VQI+G+
Sbjct: 141 EANILVPASQAASVIGKSGSVIKRLRSISKSSIKVRPKDPSEVTHSCAMSFDNFVQITGD 200
Query: 335 FSKVKDAVYNVTG 347
VK A++ V+
Sbjct: 201 ARAVKKALFAVSA 213
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 31/46 (67%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
I+ P+ VIGSV G+NG + +RQ + AKV V +P G+ R++++
Sbjct: 43 ILCPDKVIGSVIGKNGKVINSIRQQTNAKVKVVDPYPGADKRVILV 88
>gi|255584811|ref|XP_002533123.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223527086|gb|EEF29268.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 405
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 112/173 (64%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S RI+C +G VIGKGGTII ++ E+GA I V ++ E D+ LITV+A E +
Sbjct: 153 KEFSLRIVCPTGNIGGVIGKGGTIINQIRQESGAVIKVDSSTAEGDDCLITVSAKEFFDD 212
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+YSP +A + RL SEK + + GL+ RL+V ++++GCLLGKGG II+E
Sbjct: 213 QYSPTIEAAI----RLQPRCSEK---IARDSGLISFTTRLLVPTSRIGCLLGKGGVIINE 265
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MRKVT +IRI+ D L K SE+D +VQISG+ KDA+ +V+ RLR N F
Sbjct: 266 MRKVTKANIRILGKDNLPKVASEDDEMVQISGDLDVAKDALTHVSRRLRANAF 318
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 269 DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL-KCISENDR 327
D S G V ARL+V S+Q+GC++GKGG I+ +R TG IRI+ D+ L C D
Sbjct: 4 DDDSEGGHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPCALSTDE 63
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDN 352
+VQISGE + VK A+Y + RL +N
Sbjct: 64 LVQISGEVAVVKKALYQIATRLHEN 88
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+V+ R++ +D++G +IGKGG I++ ++SE GA I + +P C
Sbjct: 11 HQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPC 57
>gi|413953981|gb|AFW86630.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 667
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 184/360 (51%), Gaps = 43/360 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ FRILC NDKV ++ I+ LQ++ G + + + DER++ +T+ EGP+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+AV+ + + ++ D +K ++ RL+V S+++ C G+ G++ S+++
Sbjct: 401 LFPAQEAVLHIQTHIV--------DLGPDKDNIITTRLLVPSSEIACFDGREGSL-SDIQ 451
Query: 305 KVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +++I+ + L C E+D ++QI GE S ++A+ VT +LR
Sbjct: 452 RQTSANVQILPKEDLPLCALESDELIQIVGEISAARNALIQVTTKLR------------- 498
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
S L Y + P G ++ V S + G +LG D P S
Sbjct: 499 ----SFL-----YREMSGPIQVG---NINVHGAISPVAGSPGGPNLGN----DMPMSAYH 542
Query: 424 WTAQTVTGVHLRGSSDVGRG-WSQGLSHHKGGLELGSGSKSAI--VTNTTVEIIVPENVI 480
+Q T H + S G + QG S+ + G+ + A+ VT +T+E+++P + +
Sbjct: 543 QASQLATSWHSKDSGGSASGSFDQG-SNIIDEIRQGATKRFAVPLVTRSTLEVVIPNSAV 601
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540
S+ GS L ++ +ISGA V + E R +++V ISGTP++ A++LLQ FIL+ P
Sbjct: 602 ASLTMRAGSKLAQISEISGATVTLAEDRPDILEKVVRISGTPEQASKAENLLQGFILSIP 661
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 28/200 (14%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGPE 242
FRILC K G + ++ ++GA ++V R+I ++G
Sbjct: 91 FRILCPECKA---YGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 243 SRYSPAQKAVVLVFSRLIE----------GTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
+SPAQ+A+++V R++E +G D S ++G RL+V VGCL
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKD-SRDRGK-TTTRLIVPKMHVGCL 205
Query: 293 LGKGGTIISEMRKVTGTSIRIIS-DQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
LGKGG II +MR T T IRI+ DQ +C+S ++ VVQ+ G+ + VK AV +T RL+
Sbjct: 206 LGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 351 DN------HFSGTLNTARTR 364
++ F G +N+ R
Sbjct: 266 ESLHRDRGPFRGRMNSPEPR 285
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 185/368 (50%), Gaps = 40/368 (10%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
+ T A E+ FR+LC K+G VIG+GG I+ ++ E+GA I V + +E +I
Sbjct: 301 IPTYSAPKCSGELEFRVLCPGGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDKEESII 360
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
T+ ++E + S A +AV+L+ +++ + ++ +N RL+V + +GCL+
Sbjct: 361 TIISTESTDDVKSAAVEAVLLLQAKINDSEDDR-----------MNLRLLVPNKVIGCLI 409
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G+GG+I+++MRK T +I I + S +D +V++SGE K++DA+ + RLR+
Sbjct: 410 GRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVSGEADKLRDALVQIILRLREAV 469
Query: 354 FSGTL---NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG 410
++ N+ R + +++ S L PA + +A PL G D G
Sbjct: 470 LKESVESQNSDRDGQLTVAASDSLYGSSLPLPALLPHNQQIA--------PL--GYDRRG 519
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
+ V R SS G Q GGL SK+
Sbjct: 520 --------------EPERALEVFPRTSS-YGYSSMQVTDDGYGGLP-SYASKAYEEHVPR 563
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
+E+ VP + I V G++G+NL +R+ISGA + + EP+ + I ISGT ++ +A++
Sbjct: 564 LEMTVPASGISKVMGKHGTNLDNIRKISGAHIEIIEPKSSRHEHIAYISGTSEQRHSAEN 623
Query: 531 LLQAFILT 538
L++AFI++
Sbjct: 624 LIKAFIMS 631
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA-------- 237
V +RILC + +G+VIGK G +I A++ + A + V P D+R+I V
Sbjct: 41 VLYRILCPDSLIGSVIGKHGNVINAIRHQTSAKVKVVDPYPGADKRVILVYCYVKHRDLD 100
Query: 238 SEGPESR-YSPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGK 295
+EG ++ AQ A++ V + +++ + S+K A ++V ++Q ++GK
Sbjct: 101 AEGDDNEPVCAAQDALLRVHNAIVDALQTLHKNHKDSDKKSTEEANILVPASQASNVIGK 160
Query: 296 GGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
G +I +R + I++ SD C D VQI+G VK A++ V+
Sbjct: 161 SGAVIKHLRSTSRAFIKVSPKDPSDPTHSCAMSFDNFVQITGGAEAVKKALFGVS 215
>gi|357124311|ref|XP_003563844.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 666
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 177/356 (49%), Gaps = 40/356 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E+ FRILC NDK ++G I+ LQ E G + + + DER + +T+ EGP+
Sbjct: 341 EIIFRILCPNDKANNLVGSRDGILEMLQVEVGVDVRLTDLVVGSDERTVIITSREGPDHE 400
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+A++ + + ++ D + ++ RL+V S++V C G+ G++ S+++
Sbjct: 401 LFPAQEALLHIQTHIV--------DLGPDNDNIITTRLLVPSSEVACFEGRDGSL-SDIQ 451
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +++I+ ++L C E+D ++QI G + A+ VT ++R
Sbjct: 452 RQTSANVQILPREELPSCALESDELIQIVGGIRAARSALMQVTTKIR------------- 498
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
S + E S +++ AS VH S+ P G G+ D P +
Sbjct: 499 ---SYIYREMSVPNQI---ASINVHGSI---------PPANGSPR-GIYPGNDLPMAIYQ 542
Query: 424 WTAQTVTGVHLRGSSDVGRG-WSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ Q T H + S G + QG + + +VT +T+E+++P++ + S
Sbjct: 543 QSQQMTTSWHSKDSGGSASGSFEQGSNINDDIRSTIKRFAVPLVTRSTLEVVIPKSAVAS 602
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ GS L ++ ++SGA V + E R G +++V ISGTP++ AQSLLQ FIL+
Sbjct: 603 LSMRAGSKLAQISEMSGASVTLGEDRPGVMEKVVRISGTPEQADKAQSLLQGFILS 658
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 20/185 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS----- 238
Q SFRILC K G + I Q ++GA I++ A R+I +
Sbjct: 91 QATSFRILCPESKT---YGFPASFIIKAQDDSGAIITIHAPFAGDPVRVIEMADGVPRDV 147
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF---------SSNKGLLVNARLVVASNQV 289
+G +SPAQ+A+++V R++E + G + + ++G V RLVV V
Sbjct: 148 DGRPPMFSPAQEALIMVHRRILETEPDDGDEDGEYGPRGKDARDRGK-VTTRLVVPRLHV 206
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIIS-DQ-LLKCISENDRVVQISGEFSKVKDAVYNVTG 347
GCLLGKGG II +MR T T IRI+ DQ +C+S ++ VVQI GE + VK AV ++
Sbjct: 207 GCLLGKGGKIIEQMRSETKTHIRILPRDQNTPRCVSLSEEVVQIVGEGNCVKKAVAIISD 266
Query: 348 RLRDN 352
RL+++
Sbjct: 267 RLKES 271
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 110/368 (29%), Positives = 188/368 (51%), Gaps = 40/368 (10%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
+ T A E+ FR+LC + K+G VIG+GG I+ ++ E+GA I V + +E +I
Sbjct: 298 IPTYSAPKCSGELEFRVLCPSGKIGLVIGRGGATIKNIRQESGARIDVDDAKNDREESII 357
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
T+T++E + S A +AV+L+ +++ D+ ++ +N RL+V + +GCL+
Sbjct: 358 TITSTEAIDDVKSAAVEAVLLLQAKI--------NDYEDDR---MNLRLLVPNKVIGCLI 406
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G+GG+I+++MRK T +I I + S +D +V++SGE K++DA+ + RLR++
Sbjct: 407 GRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVSGEADKLRDALVQIILRLREDV 466
Query: 354 FSGTLNTARTRSTS--SVLTETSPY-SRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG 410
++ + + +V T S Y S L PA + +A PL+ D G
Sbjct: 467 LKESVESQNSDRDGKLTVATSDSLYGSSLSLPALLPHNPQIA--------PLS--YDRRG 516
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
S + V R SS G Q GGL SK+
Sbjct: 517 ES--------------ERALEVFPRTSS-YGYSSMQVTDDGYGGLP-SYTSKAYEEHLPR 560
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P + + V G+ G+NL +R+ISGA + + E + D I ISGT ++ Q+A++
Sbjct: 561 DEMTIPASGLSKVMGKRGTNLDNIRKISGAHIEIIESKSSRHDHIAYISGTSEQRQSAEN 620
Query: 531 LLQAFILT 538
L++AFI++
Sbjct: 621 LIKAFIMS 628
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 15/174 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV---------T 236
V +RILC + +G+VIGK G +I A++ + A + V P D+R+I V
Sbjct: 41 VLYRILCPDSLIGSVIGKNGNVINAIRQQTSAKVKVVDPYPGADKRVILVYCYVKHRDLD 100
Query: 237 ASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
A AQ A++ V + +++ D S+K A ++V ++Q ++GK
Sbjct: 101 AEVDDNEPVCAAQDALLRVHNAIVDTLHRNRRD--SDKKNTEEANILVPASQASNVIGKS 158
Query: 297 GTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
G +I +R + I++ SD C D VQI+G VK A++ V+
Sbjct: 159 GAVIKHLRSTSRAFIKVSPKDPSDATHSCAMSFDNFVQITGGAEAVKKALFGVS 212
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
I+ P+++IGSV G+NG+ + +RQ + AKV V +P G+ R++++
Sbjct: 45 ILCPDSLIGSVIGKNGNVINAIRQQTSAKVKVVDPYPGADKRVILV 90
>gi|357463999|ref|XP_003602281.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355491329|gb|AES72532.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 646
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 180/362 (49%), Gaps = 45/362 (12%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + +++ FRILC D+V ++G+ G I+ LQ G + + + DE+++ +T+
Sbjct: 323 DEQPFYEDLIFRILCPVDRVDRIVGESGGILELLQDRVGVDVQISDRVGGSDEQMVIITS 382
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
EGP PAQ+A++ + + ++ D S + ++ RL+V S+ + CL GK
Sbjct: 383 EEGPNDTMFPAQEALLHIQTHIV--------DLSDS---IITTRLIVPSSDIECLDGKNA 431
Query: 298 TIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
+ +SE+ + TG S++I+ ++L CI+ D +VQI GE ++ + +VT +LR +
Sbjct: 432 S-LSEIERSTGASVQILPREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSYVYRD 490
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
L P + L + +S V+ + Q M + ++
Sbjct: 491 ILQ----------WDTVPPSAPLPSVEASSSNSMATVAETATA---NQNMQSVAVA---- 533
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
A +G GS+++G+ Q S + L G ++VT + +E+++P
Sbjct: 534 --------LASKESG----GSTEMGK---QKESDRRDDLPTGLNRTVSLVTRSILEVVIP 578
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
E + + ++ S L ++ ++SGA V + E R ++I+ ISGTP++ + QSLLQ FI
Sbjct: 579 EYAVPKLLAKSKSKLAQISELSGANVKLVEDRPDEKEKIIQISGTPEQAERGQSLLQGFI 638
Query: 537 LT 538
L+
Sbjct: 639 LS 640
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 110/179 (61%), Gaps = 12/179 (6%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+R+LC + + G VIGK G+II++++ GA+I+V + +ER+I + T P+ R
Sbjct: 64 SYRLLCHDLRAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGR 123
Query: 245 ---YSPAQKAVVLVFSRLIEGTS--EKGLDFSSNKGLL---VNARLVVASNQVGCLLGKG 296
+SPAQ+A++L+ RL+E E D+ +G V++RLVV+ VG LLGKG
Sbjct: 124 MPQFSPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKG 183
Query: 297 GTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G II +MR T T IRI+ L +C+S ++ +VQ++G+ VK+A ++ RLR++
Sbjct: 184 GKIIEQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRESQ 242
>gi|224118310|ref|XP_002317787.1| predicted protein [Populus trichocarpa]
gi|222858460|gb|EEE96007.1| predicted protein [Populus trichocarpa]
Length = 655
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 113/374 (30%), Positives = 173/374 (46%), Gaps = 70/374 (18%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S+RILC + K G VIGK G+II++++ GA+I+V +P +ER+I + T PE R
Sbjct: 61 SYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGR 120
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL-----------DFSSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ L+ R++E + G+ ++ G V RLVV+ VG
Sbjct: 121 MPSFSPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGRGGNRVATRLVVSRMHVG 180
Query: 291 CLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
CLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+ G+ S VK+AV ++ R
Sbjct: 181 CLLGKGGKIIEQMRMETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVSAVKNAVAIISSR 240
Query: 349 LRD------NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
LR+ +HF G VHS + D P
Sbjct: 241 LRESQHRDRSHFHGR-----------------------------VHSPERLFDDDYAP-- 269
Query: 403 TQGMDHLGLSH-SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGS 461
H+ S+D P S V G + R ++ R + G + G + +
Sbjct: 270 -----HMNTRRSSMDGPPS----FGSRVPGSNYRNNNYSSR--ASGFAADAGADPIADSA 318
Query: 462 KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI--- 518
+ V + I+ P + + V GE+ + L+ G V V +P GS ++I+ I
Sbjct: 319 QPFYVEDLVFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVADPVSGSDEQIITIFSE 378
Query: 519 SGTPDETQAAQSLL 532
G DE AQ L
Sbjct: 379 EGPDDELFPAQEAL 392
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 182/360 (50%), Gaps = 39/360 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+++ FRILC DK+ V+G+ I+ LQ+E G + V + DE++IT+ + EGP+
Sbjct: 324 EDLVFRILCPIDKLNRVVGESDGIVDLLQNEIGVDVKVADPVSGSDEQIITIFSEEGPDD 383
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
PAQ+A++ + +R++ D + + RL+V S+++GCL G+ ++ SE+
Sbjct: 384 ELFPAQEALLHIQTRIV--------DLVPDNDHITTTRLLVRSSEIGCLEGRDASL-SEI 434
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++TG +I I+ ++L +S D +VQI GE +DA+ V T+R
Sbjct: 435 ERLTGATIEILPKEKLPSYLSGIDEIVQIEGEIRAARDALVEV--------------TSR 480
Query: 363 TRST--SSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
RS V + P + G+ ++ + P+ G D ++ ++
Sbjct: 481 LRSYIYKDVFEKDLPPPVSAPGLAGGMQAASPSPTPAREGPI--GGDPPASYQNVQSAAT 538
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK--SAIVTNTTVEIIVPEN 478
P+ RGSS Q S + L + + ++ +VT +T+E+++PE
Sbjct: 539 PQ-------PSKDARGSS--VEAVKQNESERREELPVTTMNRIPVTLVTRSTLEVVIPEP 589
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+ + ++ + L ++ ++SGA V + E R ++I+ ISGTP++ + AQSLLQ FIL+
Sbjct: 590 AVPKLITKSKNKLAQISELSGANVTLVEDRPDVKEKIIKISGTPEQAERAQSLLQGFILS 649
>gi|115475229|ref|NP_001061211.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|38636959|dbj|BAD03220.1| putative KH domain protein [Oryza sativa Japonica Group]
gi|113623180|dbj|BAF23125.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|215695475|dbj|BAG90642.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 183/355 (51%), Gaps = 36/355 (10%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E+ R+LC K+G VIGKGG I++++ E+GA I V + + +E +IT+T++E +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNEATDDA 180
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
S A +AV+L+ S++ + N+G + N RL+V +GCL+GKGG+I+++MR
Sbjct: 181 KSAAVEAVLLLQSKIND----------DNEGKM-NLRLLVPGKVIGCLIGKGGSIVNDMR 229
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
T +I I + + S +D +V++ GE ++DA+ + RLRD+ +++ +
Sbjct: 230 SKTKAAIYISKGEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVLRDSVDRQNSE 289
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+ T+ DP + A+ P Q + LG H D +++
Sbjct: 290 KDGKLTVATT------DPLYASSYPLPALL------PYRQQITPLGYDHRGDIERGLEVY 337
Query: 425 TAQTVTGV-HLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++ G L+ D G+S S+ G G + +E+ +P + + V
Sbjct: 338 PHSSLYGYSSLQAIDD---GYSAVSSYASKGY----GGRPP-----HMEMTIPASGLSKV 385
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
G++G+NL + +ISGA + + E + + ISGT ++ Q+A++L++AFI++
Sbjct: 386 MGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFIMS 440
>gi|293332893|ref|NP_001169297.1| uncharacterized protein LOC100383161 [Zea mays]
gi|224028485|gb|ACN33318.1| unknown [Zea mays]
Length = 664
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 177/361 (49%), Gaps = 43/361 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+++ FRILC NDK +++ I+ LQ++ G + + + DER++ +T+ EGP+
Sbjct: 337 EDIIFRILCPNDKADSLVATRDGILEMLQTDVGVDVRLSDITSDSDERVLIITSREGPDH 396
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
PAQ+AV+ + + ++ D + ++ RL+V ++++ C G+ G++ S++
Sbjct: 397 ELFPAQEAVLHIQTHIV--------DLGPDMDNIITTRLLVPASEIACFDGREGSL-SDI 447
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ T +++I+ + L C E+D ++QI GE ++A+ VT +LR
Sbjct: 448 QRQTSANVQILPREDLPSCALESDELIQIVGEIKAARNALIQVTTKLR------------ 495
Query: 363 TRSTSSVLTETSPYSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
S L Y + DP G ++ A+S P G D P
Sbjct: 496 -----SFL-----YREMPDPIQVGNINLHGAISPVAGSP--------RGPYQGNDIPMGA 537
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI--VTNTTVEIIVPENV 479
+Q T H + S G + S+ + + + A+ VT +T+EI++P +
Sbjct: 538 YHQASQLATSWHSKDSGGSASGSFEQGSNINDDIRQSATKRFAVPLVTRSTLEIVIPNSA 597
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539
+ S+ GS L ++ +ISGA V + E R ++V ISGTP++ A++LLQ FIL+
Sbjct: 598 VASLTMRAGSKLAQISEISGAAVTLAEDRSDILQKVVRISGTPEQASKAENLLQGFILSI 657
Query: 540 P 540
P
Sbjct: 658 P 658
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 28/201 (13%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGP 241
SFRILC K + + ++ ++GA ++V R+I ++G
Sbjct: 86 SFRILCPECKAYSF---SPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGC 142
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSE----------KGLDFSSNKGLLVNARLVVASNQVGC 291
+SPAQ+A+++V R++E ++ +G D + ++G RL+V VGC
Sbjct: 143 PPMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKD-ARDRGK-TTTRLIVPKQHVGC 200
Query: 292 LLGKGGTIISEMRKVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
LLGKGG II +MR T T IRI+S +C+S ++ VVQ+ G+ + VK AV +T RL
Sbjct: 201 LLGKGGKIIEQMRMETKTHIRILSRGQHTPRCVSSSEEVVQVVGDGNCVKKAVAIITDRL 260
Query: 350 RDN------HFSGTLNTARTR 364
+++ F G LN+ R
Sbjct: 261 KESLHRDRGPFRGRLNSPEPR 281
>gi|294460460|gb|ADE75808.1| unknown [Picea sitchensis]
Length = 131
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 101/136 (74%), Gaps = 7/136 (5%)
Query: 406 MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
M G+ H++D P SP W Q + R +D GRG+ Q S LGSGS+SA+
Sbjct: 1 MHRPGMHHNIDQPPSPGPWAVQGIGAGSARSMTDYGRGFPQRGS-------LGSGSQSAV 53
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
VTNTTVE++VPE VIGS+YGENG+NL ++RQISGAKVI+H+PR G+T+ +VVISGTP++T
Sbjct: 54 VTNTTVEVVVPERVIGSIYGENGNNLTQIRQISGAKVIIHDPRPGATEGLVVISGTPEQT 113
Query: 526 QAAQSLLQAFILTGPS 541
AAQSLLQAFI++G S
Sbjct: 114 HAAQSLLQAFIMSGQS 129
>gi|449456987|ref|XP_004146230.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449517605|ref|XP_004165836.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 666
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 187/366 (51%), Gaps = 48/366 (13%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+++ F+ILC +KV +VIG+ II L+++ G I V + +E+++ +++ EGP+
Sbjct: 332 EDLVFKILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISSDEGPDD 391
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
PAQ+A++ + +R++ D +K +V RL+V S+ +GCL G+ G+++ EM
Sbjct: 392 ELFPAQEALLHIQTRIV--------DLVPDKENIVTTRLLVPSSDIGCLEGRDGSLL-EM 442
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+++TG ++ I+ + L +S D +VQI G+ +DA+ +T RLR+ +
Sbjct: 443 KRLTGANVHIVPREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNCLYKEPFQKDA 502
Query: 363 TRSTSSVLTETS----PYSRLKDPASFGVHS---SVAVSHDFSQPPLTQGMDHLGLSHSL 415
+ S T S S + A+ VHS S + + QP
Sbjct: 503 SPQVSVQSTMVSLGLEESSSNNNAAAREVHSGNDSASTAFQNVQP--------------- 547
Query: 416 DCPSSPKLWTAQTV--TGVHLRGSSDVGRGWSQGLSHHKGGLELGSGS-KSAIVTNTTVE 472
TAQ + TG GSS+ +Q + + L G +VT +T+E
Sbjct: 548 -------FGTAQLLKETG----GSSN--ETGTQNENDRREDLPSGLNRIPVPLVTRSTLE 594
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+++PE + + ++ + L ++ ++SGA V + E R T +I+ ISGTP++ + AQSLL
Sbjct: 595 VVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLL 654
Query: 533 QAFILT 538
Q FIL+
Sbjct: 655 QGFILS 660
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 167/375 (44%), Gaps = 64/375 (17%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
++RILC + K G VIGK G+II++++ GA+I+V +P +ER+I + T PE R
Sbjct: 61 TYRILCHDAKAGGVIGKSGSIIKSIRQHTGAWINVHELVPGDEERIIEISDTRRRDPEGR 120
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL------------DFSSNKGLLVN-------ARL 282
+SPAQ+A+ L+ R++E G D+ +G RL
Sbjct: 121 MPSFSPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRL 180
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEFSKVKD 340
VV+ VGCLLGKGG II +MR T T IRI+ L +CIS ++ +VQI G+ + VK
Sbjct: 181 VVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKK 240
Query: 341 AVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP 400
A+ V+ RLR++ R RS + RL P V H+ +
Sbjct: 241 AIAIVSSRLRESQH-------RDRSHF--------HGRLHSPERIFPPEDDYVPHNARRL 285
Query: 401 PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
P+ P P++ + T RG+ R G +
Sbjct: 286 PMD------------GRPFRPRMSASNT------RGNDYSSR--QSNFMVEPGAAPVNDN 325
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS- 519
+ +I+ P + SV GE+ + LR G + V +P GS ++I++IS
Sbjct: 326 MMPFYGEDLVFKILCPIEKVDSVIGESNGIIELLRNDVGVDIKVSDPVTGSNEQILIISS 385
Query: 520 --GTPDETQAAQSLL 532
G DE AQ L
Sbjct: 386 DEGPDDELFPAQEAL 400
>gi|356516077|ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 647
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/398 (30%), Positives = 184/398 (46%), Gaps = 89/398 (22%)
Query: 175 ATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD 229
A A+TQQ S+RILC + K G VIGK G+II++++ GA+I+V MP +
Sbjct: 45 AARHAKTQQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDE 104
Query: 230 ERLITV--TASEGPESR---YSPAQKAVVLVFSRLIE-----GTSEKGLDFSSNKGLL-- 277
ER+I + T PE R +SPAQ+A++L+ R++E G +E ++ + +G
Sbjct: 105 ERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAG 164
Query: 278 ---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQIS 332
V RLVV+ VGCLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+
Sbjct: 165 RDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVV 224
Query: 333 GEFSKVKDAVYNVTGRLRD------NHFSGTLNTARTRSTSSVLTETSPY-------SRL 379
G+ + VK+A+ ++ RLR+ +HF G R S + Y SR
Sbjct: 225 GDVNAVKNALVIISSRLRESQHRDRSHFHG-----RVHSPERFFSPDDDYVPHVTSGSRR 279
Query: 380 K--DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGS 437
D ASFG S S + + P LS++++ ++P + AQ G L
Sbjct: 280 SSVDGASFGSRGSNTNSRNNNHP---------SLSYAMEPGAAPVVDDAQGFYGEEL--- 327
Query: 438 SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQI 497
I+ P + + GE+ + L+
Sbjct: 328 --------------------------------VFRILCPVEKVDLIIGESDGIVEFLQSE 355
Query: 498 SGAKVIVHEPRLGSTDRIVVIS---GTPDETQAAQSLL 532
G V V +P GS ++I++I+ G DE AQ L
Sbjct: 356 VGVDVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEAL 393
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 10/168 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ FRILC +KV +IG+ I+ LQSE G + V + DE++I +T+ EGP+
Sbjct: 325 EELVFRILCPVEKVDLIIGESDGIVEFLQSEVGVDVKVTDPVGGSDEQIIIITSEEGPDD 384
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
PAQ+A++ + +R++ D +K + RLVV S+++ CL GK + +SE+
Sbjct: 385 ELFPAQEALLHIQTRIV--------DLVLDKDNTITTRLVVPSSEIECLDGKDVS-LSEI 435
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
R++TG +I+I+ D L C+++ D +VQI GE +DAV VT RLR
Sbjct: 436 RRLTGANIQILPRDDLPLCVAKTDELVQIVGEIKAARDAVVEVTSRLR 483
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+VT +T+E+++PE + + ++ S L ++ ++SGA V + E R T +I+ ISGTP++
Sbjct: 568 LVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 627
Query: 525 TQAAQSLLQAFILT 538
+ AQSLLQ FIL+
Sbjct: 628 AERAQSLLQGFILS 641
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 186/378 (49%), Gaps = 59/378 (15%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V T + E+ R++C DK+G VIGK G I+ ++ E+GA + V + +E +I
Sbjct: 300 VPTYNTPKCSGELLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESII 359
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
TV+++E + S A +AV+L+ +++ + T ++ ++ RL+V N +GCL+
Sbjct: 360 TVSSTEATDDVKSAAVEAVLLLQAKINDETEDR-----------MHLRLLVPGNVIGCLI 408
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
GKGG+II++MR + I I + S +D +V++ GE K++DA+ + RLR++
Sbjct: 409 GKGGSIINDMRNKSKAIIHISKGTKPRKASSSDELVEVFGEVDKLRDALVQIVLRLREDV 468
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
++ + + T+ +P S S F P L
Sbjct: 469 LKDSVGRQNSGKDGKLTVATT------EPVS---------SSSFPMPAL----------- 502
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRG---WSQGLSHH----KGGLELGSGSKSAIV 466
L +Q +T + +V RG + + +H + ++ G G +S+
Sbjct: 503 ---------LPYSQQITPLRHDQRGEVERGSNVFPRSSLYHGYSPREAVDDGFGVRSSYT 553
Query: 467 TN------TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
+ +E+ +P + + V G++G+NL +R+ISGA + + E + D + I G
Sbjct: 554 SKPYGRRVPDMEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEILESKSSRHDHVAHIFG 613
Query: 521 TPDETQAAQSLLQAFILT 538
TP++ Q+A++L++AFI++
Sbjct: 614 TPEQWQSAENLIKAFIMS 631
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/384 (22%), Positives = 163/384 (42%), Gaps = 73/384 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV---------- 235
V +RILC + +G+VIGKGG +I +++ + A + V P D+R+I V
Sbjct: 38 VVYRILCPDKVIGSVIGKGGKVINSIRQQTNAKVKVVDPYPGADKRVILVYCYVKHRDVM 97
Query: 236 -----TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
+ AQ A++ V ++ + D S +K A ++V ++Q
Sbjct: 98 LSDINADDDDDREPVCAAQNALLKVHDAIVGALAV--TDDSDDK----EANILVPASQAA 151
Query: 291 CLLGKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
++GK G++I ++R V+ + I++ SD C D VQI+G+ VK A++ V+
Sbjct: 152 SVIGKSGSVIKKLRSVSKSFIKVKPKDPSDVTHSCAMSFDNFVQITGDARAVKKALFAVS 211
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETS-----PYSRLKDPASFGVHSSVAVSHDFSQPP 401
+ + S ++ ETS P L P+ V+ + ++
Sbjct: 212 TIM-----------YKCPSKENIPLETSIDELPPTIIL--PSELPVYPASSL-------- 250
Query: 402 LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGS 461
+S+ S P + ++ G RGS ++ + H GGL +
Sbjct: 251 -----------YSVSDASMPSGHPSLSILGATSRGSH--VPDFTVPIDTH-GGLPIYQSM 296
Query: 462 KSAIVTNTT--------VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
A+ T T + ++ P + IG V G+ G + +R+ SGA+V V + + +
Sbjct: 297 VPAVPTYNTPKCSGELLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEE 356
Query: 514 RIVVISGTPDETQAAQSLLQAFIL 537
I+ +S T + ++A +L
Sbjct: 357 SIITVSSTEATDDVKSAAVEAVLL 380
>gi|302754958|ref|XP_002960903.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
gi|300171842|gb|EFJ38442.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
Length = 502
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 137/261 (52%), Gaps = 44/261 (16%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E + R+LC N+K+G+VIGKGG IIR+++ E A I + + +ER+I +T++E +
Sbjct: 274 EFAVRLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITSNEVLHEQ 333
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA +AV+ + SR+ + ++EK ++ R +V S +GCLLGK G+II++MR
Sbjct: 334 VSPALEAVLQLQSRISDPSAEKDGAMTT--------RFLVPSANIGCLLGKKGSIIADMR 385
Query: 305 KVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +IR++S + L KC E+D +VQ+ G+ + +DAV + RLR N FS + +
Sbjct: 386 RNTRANIRVLSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLRANIFSEHMKNVSS 445
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVS------HD-----FSQPPLTQGMDHLGLS 412
GV SV VS H+ FS P G+ GL
Sbjct: 446 NP------------------GLGVQGSVPVSSTYEPRHEPSPGMFSLP----GLGSQGLR 483
Query: 413 HSLDCPSSPKLWTAQTVTGVH 433
S+ P++P+ W Q H
Sbjct: 484 SSI--PATPRNWGLQVSPAFH 502
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 110/190 (57%), Gaps = 27/190 (14%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE----- 239
+V +RILC K+G+VIGKGG+II++L++E GA I V +P DER+I ++ E
Sbjct: 45 DVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIPGSDERVIFISPRERREGK 104
Query: 240 ---------------GPESRYSPA-QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
G ES PA Q+A+ VF+R++EG + SS V ARL+
Sbjct: 105 PRGGSKEMDKDKEQNGEESTPLPASQEALFKVFARIVEGEEFDEDEDSSRN---VTARLL 161
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAV 342
V SNQ+GCLLGK G II +MR +G IR++ +QL KC D + ++GE + VK A+
Sbjct: 162 VPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLPKCAYHTDEL--LTGELALVKKAL 219
Query: 343 YNVTGRLRDN 352
++ RL DN
Sbjct: 220 TTISTRLYDN 229
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 450 HHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL 509
+GG E + + V + I+ P IGSV G+ GS + LR +GAK+ V +
Sbjct: 27 RRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIP 86
Query: 510 GSTDRIVVIS 519
GS +R++ IS
Sbjct: 87 GSDERVIFIS 96
>gi|356509231|ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 644
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 116/395 (29%), Positives = 178/395 (45%), Gaps = 86/395 (21%)
Query: 175 ATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD 229
A A+TQQ S+RILC + K G VIGK G+II++++ GA+I+V MP +
Sbjct: 45 AARHAKTQQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDE 104
Query: 230 ERLITV--TASEGPESR---YSPAQKAVVLVFSRLIEGTSEKGL-------DFSSNKGLL 277
ER+I + T PE R +SPAQ+A++L+ R++E + G+
Sbjct: 105 ERIIEISDTRRRDPEGRMPSFSPAQEALLLIHERILESDAAFGVAEEDEEYGGRGGGRDR 164
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII--SDQLLKCISENDRVVQISGEF 335
+ RLVV+ VGCLLGKGG II +MR T T IRI+ L +C+S ++ +VQ+ G
Sbjct: 165 IATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGNV 224
Query: 336 SKVKDAVYNVTGRLRD------NHFSGTLNTARTRSTSSVLTETSPY-------SRLK-- 380
+ VK+A+ ++ RLR+ +HF G R S + Y SR
Sbjct: 225 NAVKNALVIISSRLRESQHRDRSHFHG-----RVHSPERFFSPDDDYVPHVTSGSRRSSV 279
Query: 381 DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDV 440
D ASFG S S + + P L+++++ ++P + AQ G L
Sbjct: 280 DGASFGSRGSNTNSRNNNHP---------SLNYAMEPGAAPVVDDAQGFYGEEL------ 324
Query: 441 GRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGA 500
I+ P + + GE+ + L+ G
Sbjct: 325 -----------------------------VFRILCPIEKVDRIIGESEGIVEFLQNEVGV 355
Query: 501 KVIVHEPRLGSTDRIVVIS---GTPDETQAAQSLL 532
V V +P GS ++I++I+ G DE AQ L
Sbjct: 356 DVKVTDPVGGSDEQIIIITSEEGPDDELFPAQEAL 390
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 103/168 (61%), Gaps = 10/168 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ FRILC +KV +IG+ I+ LQ+E G + V + DE++I +T+ EGP+
Sbjct: 322 EELVFRILCPIEKVDRIIGESEGIVEFLQNEVGVDVKVTDPVGGSDEQIIIITSEEGPDD 381
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
PAQ+A++ V +R++ D +K + RLVV S+++ CL GK + +SE+
Sbjct: 382 ELFPAQEALLHVQTRIV--------DLVLDKDNTITTRLVVPSSEIECLDGKDVS-LSEI 432
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
R++TG +I+I+ D+L C+++ D +VQI GE +DAV VT RLR
Sbjct: 433 RRLTGANIQILPRDELPLCVAKTDELVQIVGEIKAARDAVVEVTSRLR 480
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+VT +T+E+++PE + + ++ S L ++ ++SGA V + E R T +I+ ISGTP++
Sbjct: 565 LVTRSTLEVVLPEYAVPKLVAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 624
Query: 525 TQAAQSLLQAFILT 538
+ AQSLLQ FIL+
Sbjct: 625 AERAQSLLQGFILS 638
>gi|297804330|ref|XP_002870049.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297315885|gb|EFH46308.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 605
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 180/362 (49%), Gaps = 67/362 (18%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTAS 238
++ +E+ ++LC + VIGKGG+ I+ ++ +G+ I V + +C DE +I VTA+
Sbjct: 306 SRSKELVLKVLCPLSNITRVIGKGGSTIKRIRETSGSCIEVNDSRTKCGDDECVIIVTAT 365
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P+ S A +AV+L+ + + +EK V +L V+S +GC++GK G+
Sbjct: 366 ESPDDMKSMAVEAVLLLQEYINDEDAEK-----------VKMQLFVSSKDIGCVIGKSGS 414
Query: 299 IISEMRKVTGTSIRIISDQLLKCISE--NDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
+I+E+RK T +I CIS+ D +V+++GE S V++A+ + RLR++
Sbjct: 415 VINEIRKRTNANI---------CISKGKKDDLVEVAGEISSVRNAIIQIVLRLREDVLGD 465
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
+ A +R K PA +S L G + G +
Sbjct: 466 RDSVAASR---------------KPPARTDNYS------------LFSGSSNAGYTL--- 495
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
P ++ + +G H GS G +S + G + +++ +EI++P
Sbjct: 496 ----PSFMSSASSSGFHGYGSFPAGDNVFGSVSPYSFG---------RLPSSSALEILIP 542
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
N + V G+ G NL +R+ISGA + + + + D I ++SGT ++ + A++L+QAFI
Sbjct: 543 ANAMSKVMGKGGGNLENIRRISGAMIEISDSKTSQGDHIALLSGTLEQMRCAENLVQAFI 602
Query: 537 LT 538
++
Sbjct: 603 MS 604
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 102/384 (26%), Positives = 173/384 (45%), Gaps = 68/384 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V +RILC D VG VIGK G +I A++ A I V + C +R+IT+ S
Sbjct: 38 VIYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKKEE 97
Query: 239 --EGPESRYSP---AQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCL 292
+ +S P AQ A++ V+ ++ E +D K L L+V S+Q L
Sbjct: 98 EIDFMKSETEPLCCAQDALLKVYDAIVASDEENIKIDRDDKKECL----LLVPSSQSFSL 153
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLK----CISENDRVVQISGEFSKVKDAVYNVTGR 348
+GK G I +R T S++++S + C + D +V ISGE VK A++ V
Sbjct: 154 IGKAGENIKRIRSTTRASVKVVSKDVSDPSHVCAMDYDNIVVISGEPESVKKALFAV--- 210
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGVHSSVAVSHDFSQPPLTQGMD 407
S++L + +P + D V +S+ VS D S Q
Sbjct: 211 ------------------SAILYKINPREHIPLDSTGQDVPASIIVSSDLSNSVYPQTGF 252
Query: 408 HLGLSHSLDCPSS-PKLWTAQTVTGVHLRGSSDVGR------GWSQGLSHHKGGLELGSG 460
+ H L + P + A +V+ + +G ++ S ++H GG S
Sbjct: 253 YSNQDHILQQRAGVPSYFNALSVS--NFQGYAETAANPMPVFASSLPVTHGFGG---SSR 307
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR--LGSTDRIVVI 518
SK + ++++ P + I V G+ GS + R+R+ SG+ + V++ R G + ++++
Sbjct: 308 SKELV-----LKVLCPLSNITRVIGKGGSTIKRIRETSGSCIEVNDSRTKCGDDECVIIV 362
Query: 519 SGT--PDETQA----AQSLLQAFI 536
+ T PD+ ++ A LLQ +I
Sbjct: 363 TATESPDDMKSMAVEAVLLLQEYI 386
>gi|302767378|ref|XP_002967109.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
gi|300165100|gb|EFJ31708.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
Length = 506
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 113/192 (58%), Gaps = 27/192 (14%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------ 238
+V +RILC K+G+VIGKGG+II++L++E GA I V +P DER+I ++AS
Sbjct: 45 DVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIPGSDERVIFISASPRERRE 104
Query: 239 ----------------EGPESRYSPA-QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNAR 281
G ES PA Q+A+ VF+R++EG + SS V AR
Sbjct: 105 GKPRGGSKEMDKDKEQNGEESTPLPASQEALFKVFARIVEGEEFDEDEDSSRN---VTAR 161
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKD 340
L+V SNQ+GCLLGK G II +MR +G IR++ +QL KC D +VQ++GE + VK
Sbjct: 162 LLVPSNQIGCLLGKAGKIIEQMRVESGAQIRVLPREQLPKCAYHTDELVQLTGELALVKK 221
Query: 341 AVYNVTGRLRDN 352
A+ ++ RL DN
Sbjct: 222 ALTTISTRLYDN 233
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 137/261 (52%), Gaps = 44/261 (16%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E + R+LC N+K+G+VIGKGG IIR+++ E A I + + +ER+I +T++E +
Sbjct: 278 EFAVRLLCPNEKIGSVIGKGGMIIRSIREETCARIKIADAVANAEERVIHITSNEVLHEQ 337
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA +AV+ + SR+ + ++EK ++ R +V S +GCLLGK G+II++MR
Sbjct: 338 VSPALEAVLQLQSRISDPSAEKDGAMTT--------RFLVPSANIGCLLGKKGSIIADMR 389
Query: 305 KVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ T +IR++S + L KC E+D +VQ+ G+ + +DAV + RLR N FS + +
Sbjct: 390 RNTRANIRVLSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLRANIFSEHMKNVSS 449
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVS------HD-----FSQPPLTQGMDHLGLS 412
GV SV VS H+ FS P G+ GL
Sbjct: 450 N------------------PGLGVQGSVPVSSTYEPRHEPSPGMFSLP----GLGSQGLR 487
Query: 413 HSLDCPSSPKLWTAQTVTGVH 433
S+ P++P+ W Q H
Sbjct: 488 SSI--PATPRNWGLQVSPVFH 506
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 450 HHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL 509
+GG E + + V + I+ P IGSV G+ GS + LR +GAK+ V +
Sbjct: 27 RRRGGFERTPEAAAPPVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKVADGIP 86
Query: 510 GSTDRIVVISGTPDETQAAQ 529
GS +R++ IS +P E + +
Sbjct: 87 GSDERVIFISASPRERREGK 106
>gi|334187557|ref|NP_196518.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004027|gb|AED91410.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 612
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 129/449 (28%), Positives = 210/449 (46%), Gaps = 93/449 (20%)
Query: 68 EAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLF 127
EAVP D + RP+E Q+ +R ++ P L R +E+ ++ R F
Sbjct: 223 EAVP-DALRRPMEYRSQQ--YREVD--PHGSLHRHVEISQEDALVRP-----------FF 266
Query: 128 GAVSQ---EILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
++Q + LP D + ++T+A S V+ +PL D + +
Sbjct: 267 RTITQPRIDYLPHPSYD-----HRLITSA--SKNPPVTIKQPLQASKDDI---------R 310
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+V +ILCSN+ VI +S A ISVG P+CDERL+T+TA E +
Sbjct: 311 QVDLKILCSNESASVVI--------KTRSVTDASISVGDRHPDCDERLVTITAFEKTKDI 362
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--VNARLVVASNQVGCLLGKGGTIISE 302
S +Q+A+VLVFS + E + K LD GL + ARLVV SNQ+ CLLG+ G I +
Sbjct: 363 TSESQRALVLVFSNMYENATAKVLD----SGLTSSITARLVVRSNQINCLLGEEGRIKTT 418
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
+++ TG I +++ +Q KC+SEN++VVQISGEF V++A+ VT LR++ + +
Sbjct: 419 IQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRG 478
Query: 362 RTRSTS-------SVLTETSPY------SRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
+ + + + T+ Y S DP +SS A S + PP
Sbjct: 479 SQYAVNYSEDPFPELFSPTAGYTPTFGRSSTMDPNDIFHYSSQASSRLWESPP------- 531
Query: 409 LGLSHSLDCPSSPK--------LWTAQ---TVTGVHLRGSSDVGRGWSQGLSHHKGGLEL 457
P++P+ L++ + +T + + +GWSQ + E
Sbjct: 532 ---------PAAPRSVNDGSGGLFSTRDDLVLTRIRCVLYVWIWKGWSQSSTEES---ER 579
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGE 486
G+ + ++ T EI E+ + ++Y E
Sbjct: 580 GNMDMTICISGTPDEIQAAEHRLHAIYPE 608
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 34/192 (17%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPE 242
+ V+FRILC+ + G VIGK G +++ L + I V T + + R+I + G
Sbjct: 28 EYVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSV 87
Query: 243 SRY-----------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
SR S AQ A++ VF + L+F V+
Sbjct: 88 SRVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVF---------EALNFGDCTSSTVS 138
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKV 338
L++ + V ++GK G ++ + + TG ++++ S L C + D V++I G S V
Sbjct: 139 CNLLMEGSHVVTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLKIEGNRLSAV 198
Query: 339 KDAVYNVTGRLR 350
A+ +++ RL+
Sbjct: 199 MKALVSISSRLQ 210
>gi|110224788|emb|CAL07994.1| putative nucleic acid binding protein [Platanus x acerifolia]
Length = 288
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 109/172 (63%), Gaps = 7/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG++I+ ++ E+GAFI V ++ E D+ +I++++ E E
Sbjct: 94 KEFSLRLVCPTGNIGGVIGKGGSVIKQIRQESGAFIKVDSSAAEADDCIISISSKEFFED 153
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V RL SEK S + RL+V ++++GCL+GKGG+IISEM
Sbjct: 154 PISPTIDAAV----RLQPKCSEKSDRESGDSTF--TTRLLVPTSRIGCLIGKGGSIISEM 207
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
RKVT +IRI+S + L K SE+D +VQI+G+ ++A+ VT RL+ N F
Sbjct: 208 RKVTKANIRILSKENLPKVASEDDEMVQITGDLDVARNALIQVTTRLKTNFF 259
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 82/378 (21%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEPEP 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D S V AR++V
Sbjct: 102 TDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILV 161
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 162 QGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALY 221
Query: 344 NVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
++ RL + E P + D ++ S + H++S P
Sbjct: 222 EISTRLHQH----------------PRKENRPLEEIIDASTQRKRESPTLQHEYSMLP-- 263
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
HL HS P P L D R Q
Sbjct: 264 ----HL---HSDHTPPIPLL---------------DPYRSGPQ----------------- 284
Query: 464 AIVTNT---TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVIS 519
VT T ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R+++IS
Sbjct: 285 YPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIIS 344
Query: 520 GTPDETQAAQSLLQAFIL 537
+ ++A IL
Sbjct: 345 SNEIPAEPISPAIEALIL 362
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 124/242 (51%), Gaps = 40/242 (16%)
Query: 101 RPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISY 160
RPLE S+ R E+ +++ ++ + LP LH D T P
Sbjct: 236 RPLEEIIDASTQRKRESPTLQHEYSM--------LPHLHSD---------HTPPI----- 273
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
PL L+ R T+ +E S RILC+++ +G+VIGK G +R ++ + GA I
Sbjct: 274 -----PL-LDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIK 327
Query: 221 VGATMPECD-ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V + ERLI ++++E P SPA +A++L+ + + SEK +
Sbjct: 328 VQEIDKDASGERLIIISSNEIPAEPISPAIEALILLHDK-VSAPSEKHHS---------S 377
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKV 338
RLVV S++VGC++G+GG +I++MR+ TG IR+ S K +S +D +VQ +G+
Sbjct: 378 TRLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRVYSKADKPKYLSFDDELVQAAGQIHGR 437
Query: 339 KD 340
+D
Sbjct: 438 ED 439
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 452 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 511
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 512 QSLLQGFI 519
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 37/186 (19%)
Query: 163 AVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222
A+ L L D+V+ A +++ S R++ + KVG +IG+GG +I ++ GA I V
Sbjct: 356 AIEALILLHDKVS---APSEKHHSSTRLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRV- 411
Query: 223 ATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR-------LIEGTSEKGLDFSSNKG 275
YS A K L F I G + S+
Sbjct: 412 ----------------------YSKADKPKYLSFDDELVQAAGQIHGREDYREPTSATGR 449
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
L L + ++ +G ++G GG ++E+R+V+G +R+ ++ VV+I G
Sbjct: 450 FLSTIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHA----GSSESVVEIQGTL 505
Query: 336 SKVKDA 341
+ K A
Sbjct: 506 DQAKAA 511
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
D VA + +V+ RIL ++VG ++GKGG+II+ L+S GA I V +P+C
Sbjct: 141 DEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 82/378 (21%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEPEP 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D S V AR++V
Sbjct: 102 TDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILV 161
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 162 QGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALY 221
Query: 344 NVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
++ RL + E P + D ++ S + H++S P
Sbjct: 222 EISTRLHQH----------------PRKENRPLEEIIDASTQRKRESPTLQHEYSMLP-- 263
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
HL HS P P L D R Q
Sbjct: 264 ----HL---HSDHTPPIPLL---------------DPYRSGPQ----------------- 284
Query: 464 AIVTNT---TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVIS 519
VT T ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R+++IS
Sbjct: 285 YPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIIS 344
Query: 520 GTPDETQAAQSLLQAFIL 537
+ ++A IL
Sbjct: 345 SNEIPAEPISPAIEALIL 362
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 40/252 (15%)
Query: 101 RPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISY 160
RPLE S+ R E+ +++ ++ + LP LH D T P
Sbjct: 236 RPLEEIIDASTQRKRESPTLQHEYSM--------LPHLHSD---------HTPPI----- 273
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
PL L+ R T+ +E S RILC+++ +G+VIGK G +R ++ + GA I
Sbjct: 274 -----PL-LDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIK 327
Query: 221 VGATMPECD-ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V + ERLI ++++E P SPA +A++L+ + + SEK +
Sbjct: 328 VQEIDKDASGERLIIISSNEIPAEPISPAIEALILLHDK-VSAPSEKHHS---------S 377
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKV 338
RLVV S++VGC++G+GG +I++MR+ TG IR+ S K +S +D +VQ++G +
Sbjct: 378 TRLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRVYSKADKPKYLSFDDELVQVAGPPTIA 437
Query: 339 KDAVYNVTGRLR 350
+ A+ + RLR
Sbjct: 438 RGALTEIASRLR 449
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 680 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 739
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 740 QSLLQGFI 747
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
D VA + +V+ RIL ++VG ++GKGG+II+ L+S GA I V +P+C
Sbjct: 141 DEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 173/378 (45%), Gaps = 82/378 (21%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNEPEP 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D S V AR++V
Sbjct: 102 TDEAAEEKNSDGLGNFKSHCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILV 161
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 162 QGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALY 221
Query: 344 NVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
++ RL + E P + D ++ S + H++S P
Sbjct: 222 EISTRLHQH----------------PRKENRPLEEIIDASTQRKRESPTLQHEYSMLP-- 263
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
HL HS P P L D R Q
Sbjct: 264 ----HL---HSDHTPPIPLL---------------DPYRSGPQ----------------- 284
Query: 464 AIVTNT---TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVIS 519
VT T ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R+++IS
Sbjct: 285 YPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIIS 344
Query: 520 GTPDETQAAQSLLQAFIL 537
+ ++A IL
Sbjct: 345 SNEIPAEPISPAIEALIL 362
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 130/252 (51%), Gaps = 40/252 (15%)
Query: 101 RPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISY 160
RPLE S+ R E+ +++ ++ + LP LH D T P
Sbjct: 236 RPLEEIIDASTQRKRESPTLQHEYSM--------LPHLHSD---------HTPPI----- 273
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
PL L+ R T+ +E S RILC+++ +G+VIGK G +R ++ + GA I
Sbjct: 274 -----PL-LDPYRSGPQYPVTETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIK 327
Query: 221 VGATMPECD-ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V + ERLI ++++E P SPA +A++L+ + + SEK +
Sbjct: 328 VQEIDKDASGERLIIISSNEIPAEPISPAIEALILLHDK-VSAPSEKHHS---------S 377
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKV 338
RLVV S++VGC++G+GG +I++MR+ TG IR+ S K +S +D +VQ++G +
Sbjct: 378 TRLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRVYSKADKPKYLSFDDELVQVAGPPTIA 437
Query: 339 KDAVYNVTGRLR 350
+ A+ + RLR
Sbjct: 438 RGALTEIASRLR 449
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 681 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 740
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 741 QSLLQGFI 748
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
D VA + +V+ RIL ++VG ++GKGG+II+ L+S GA I V +P+C
Sbjct: 141 DEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSNTGAGIRVLPSENLPQC 199
>gi|7671433|emb|CAB89374.1| putative protein [Arabidopsis thaliana]
Length = 567
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 154/291 (52%), Gaps = 50/291 (17%)
Query: 68 EAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLF 127
EAVP D + RP+E Q+ +R E P L R +E+ ++ R F
Sbjct: 227 EAVP-DALRRPMEYRSQQ--YR--EVDPHGSLHRHVEISQEDALVRP-----------FF 270
Query: 128 GAVSQ---EILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
++Q + LP D + ++T+A S V+ +PL D + +
Sbjct: 271 RTITQPRIDYLPHPSYD-----HRLITSA--SKNPPVTIKQPLQASKDDI---------R 314
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+V +ILCSN+ VI +S A ISVG P+CDERL+T+TA E +
Sbjct: 315 QVDLKILCSNESASVVIKT--------RSVTDASISVGDRHPDCDERLVTITAFEKTKDI 366
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--VNARLVVASNQVGCLLGKGGTIISE 302
S +Q+A+VLVFS + E + K LD GL + ARLVV SNQ+ CLLG+ G I +
Sbjct: 367 TSESQRALVLVFSNMYENATAKVLD----SGLTSSITARLVVRSNQINCLLGEEGRIKTT 422
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+++ TG I +++ +Q KC+SEN++VVQISGEF V++A+ VT LR++
Sbjct: 423 IQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLRED 473
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 33/151 (21%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPE 242
+ V+FRILC+ + G VIGK G +++ L + I V T + + R+I + G
Sbjct: 28 EYVTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSV 87
Query: 243 SRY-----------------------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
SR S AQ A++ VF + L+F V+
Sbjct: 88 SRVKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVF---------EALNFGDCTSSTVS 138
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
L++ + V ++GK G ++ + + TG +
Sbjct: 139 CNLLMEGSHVVTVIGKNGELMQRILEETGCN 169
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 108/183 (59%), Gaps = 13/183 (7%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q + +R LC K+G++IG+GG I++ L+ + A I +G T+P CDER++TV +
Sbjct: 46 QDDTVYRYLCPVRKIGSIIGRGGEIVKQLRLDTKAKIRIGETVPGCDERVVTVYSVSDES 105
Query: 243 SRY-------SPAQKAVVLVFSRLI----EGTSEKGLDFSS-NKGLLVNARLVVASNQVG 290
+ + PA A+V + ++I G ++ +D + G LV A+L+VAS+Q+G
Sbjct: 106 NDFEDSGEFMCPAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIG 165
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRL 349
C++GKGG I+ +R TG IRI+ D L C +D +VQISGE + VK A+ V RL
Sbjct: 166 CVIGKGGQIVQNIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
Query: 350 RDN 352
DN
Sbjct: 226 HDN 228
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 15/195 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R +C +G VIGKGG II ++ ++GA I V ++ E D+ LI ++A E E
Sbjct: 294 KEFSVRFVCPTANIGGVIGKGGGIINQIRQDSGANIKVDSSATEGDDCLIAISARELFED 353
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+S +A VL+ R SEK + G+L +RL+V+S+++GCL+GKGG+II+E
Sbjct: 354 PFSATIEAAVLLQPR----CSEK---VERDSGILSFTSRLLVSSSRIGCLIGKGGSIITE 406
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
MR++T +IRI+S + L K +E+D +VQISGE KDA+ V RLR N F
Sbjct: 407 MRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIAKDALLQVLTRLRANLFD------ 460
Query: 362 RTRSTSSVLTETSPY 376
+ RS SS+L Y
Sbjct: 461 KERSVSSLLPPVLAY 475
>gi|224077694|ref|XP_002305366.1| predicted protein [Populus trichocarpa]
gi|222848330|gb|EEE85877.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 106/173 (61%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +GAVIGKGGTII ++ E+GA I V ++ E D+ LIT++A E +
Sbjct: 29 KEFSLRMVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSASEGDDCLITISAKEICDD 88
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+YSP +A + RL SEK + GL RL+V S+ +GCLLGKGG II E
Sbjct: 89 QYSPTIEAAL----RLQPRCSEK---MERDSGLFSFTTRLLVPSSHIGCLLGKGGLIIDE 141
Query: 303 MRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MRK+T IRI D+L K ++D +VQISG+ KDA+ ++ RLR N F
Sbjct: 142 MRKLTKAIIRIPRKDKLPKTALDDDEMVQISGDLDIAKDALIQISRRLRANAF 194
>gi|15236863|ref|NP_193572.1| KH domain-containing protein [Arabidopsis thaliana]
gi|15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-containing protein At4g18375
gi|22136632|gb|AAM91635.1| unknown protein [Arabidopsis thaliana]
gi|332658636|gb|AEE84036.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 606
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/365 (28%), Positives = 181/365 (49%), Gaps = 73/365 (20%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTAS 238
++ +E+ F++LC + VIGKGG+ I+ ++ +G+ I V + +C DE +I VTA+
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P+ S A +AV+L+ + + +E V +L+V+S +GC++GK G+
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYINDEDAEN-----------VKMQLLVSSKVIGCVIGKSGS 415
Query: 299 IISEMRKVTGTSIRIISDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
+I+E+RK T +I CIS + D +V++SGE S V+DA+ + RLR++ G
Sbjct: 416 VINEIRKRTNANI---------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLREDVL-G 465
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
++ TR P +R D SF SS A ++ P M
Sbjct: 466 DKDSVATR---------KPPAR-TDNCSFLSGSSNA---GYTLPSFMSSM---------- 502
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG---SKSAIVTNTTVEI 473
+ +G H GS G LGS S + +++ +EI
Sbjct: 503 ----------ASTSGFHGYGSFPAGDNV------------LGSTGPYSYGRLPSSSALEI 540
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
++P + + V G+ G NL +R+ISGA + + + D I ++SGT ++ + A++L+Q
Sbjct: 541 LIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCAENLVQ 600
Query: 534 AFILT 538
AF+++
Sbjct: 601 AFVMS 605
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 171/394 (43%), Gaps = 69/394 (17%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + + V +RILC D VG VIGK G +I A++ A I V + C +R+IT+
Sbjct: 28 DKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYC 87
Query: 238 S--EGPE------SRYSP---AQKAVVLVFSRLI----EGTSEKGLDFSSNKGLLVNARL 282
S E E S P AQ A++ V+ ++ E ++ +D NK RL
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNK----ECRL 143
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK----CISENDRVVQISGEFSKV 338
+V +Q L+GK G I +R+ T S++++S + C E D VV ISGE V
Sbjct: 144 LVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESV 203
Query: 339 KDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGV-HSSVAVSHD 396
K A++ V S+++ + +P + D S V +SV V D
Sbjct: 204 KQALFAV---------------------SAIMYKINPRENIPLDSTSQDVPAASVIVPSD 242
Query: 397 FS-----QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSH 450
S Q DH+ L PS + G ++ V S ++H
Sbjct: 243 LSNSVYPQTGFYSNQDHI-LQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTH 301
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR-- 508
GG S+ +++ P I V G+ GS + R+R+ SG+ + V++ R
Sbjct: 302 GFGG--------SSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTK 353
Query: 509 LGSTDRIVVISGT--PDETQA----AQSLLQAFI 536
G + +++++ T PD+ ++ A LLQ +I
Sbjct: 354 CGDDECVIIVTATESPDDMKSMAVEAVLLLQEYI 387
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 105/173 (60%), Gaps = 11/173 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY-- 245
FR LC K+G+VIG+GG I++ L+++ A I +G +P CDER++T+ +S + +
Sbjct: 46 FRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFDE 105
Query: 246 -----SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
SPAQ A+ V R+I + + D N V A+L+V S+Q+GC++GKGG I+
Sbjct: 106 TGDLVSPAQDALFRVHQRVIAEDAREDEDDERNH---VTAKLLVPSDQIGCVIGKGGQIV 162
Query: 301 SEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+R TG IRI+ D L C ND +VQISGE + VK A++ + ++RDN
Sbjct: 163 QNIRSETGAQIRILKDDRLPPCALSNDELVQISGEAAVVKKALFQIAAQIRDN 215
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R +C +G VIGKGG II ++ ++GA I V ++ E D+ LI ++ E E
Sbjct: 277 REFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISMKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+SP +A V RL SEK + G++ RL+V ++++GCL+GKGGTI++E
Sbjct: 337 SFSPTIEAAV----RLQPRCSEK---VERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTE 389
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR++T +IRI+S + L K SE+D +VQISG+ KDA+ RLR N F
Sbjct: 390 MRRLTKANIRILSKENLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLF 442
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 124 bits (312), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--- 238
+++ FR LC K+G++IG+GG I++ L+ E A I +G T+P CDER++TV +S
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+ + SPA+ A+ + R++ + D G VNA+L+V S+Q+GC+LG
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVV--AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLG 160
Query: 295 KGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
KGG I+ +R TG IRI+ D + C +D +VQISG+ + VK A++ + RL N
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHN 219
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 10/182 (5%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
A D + +E S R++C +G VIGKGG II ++ ++GA I V ++ + D+ LIT
Sbjct: 278 APRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLIT 336
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLL 293
++ E E +SP +A VL+ R E SE+ + G++ RL+V+S+++GCL+
Sbjct: 337 ISTKEFFEETFSPTVEAAVLLQPRCSE-KSER------DSGIISFTTRLLVSSSRIGCLI 389
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GKGG+II+EMR++T ++IRI+S + L K S++D +VQISG+ KDA+ V RLR N
Sbjct: 390 GKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRAN 449
Query: 353 HF 354
F
Sbjct: 450 LF 451
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 106/179 (59%), Gaps = 10/179 (5%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--- 238
+++ FR LC K+G++IG+GG I++ L+ E A I +G T+P CDER++TV +S
Sbjct: 43 NKEDTVFRYLCPGRKIGSIIGRGGEIVKQLRVETKAKIRIGETVPGCDERVVTVYSSSDE 102
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+ + SPA+ A+ + R++ + D G VNA+L+V S+Q+GC+LG
Sbjct: 103 TNTVDDGDKLVSPAEDALFKIHDRVV--AEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLG 160
Query: 295 KGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
KGG I+ +R TG IRI+ D + C +D +VQISG+ + VK A++ + RL N
Sbjct: 161 KGGQIVQNLRSETGAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRLHHN 219
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 115/182 (63%), Gaps = 10/182 (5%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
A D + +E S R++C +G VIGKGG II ++ ++GA I V ++ + D+ LIT
Sbjct: 278 APRDEISSSKEFSVRLVCPTGNLGGVIGKGGGIINQIRQDSGATIKVDSSA-KGDDCLIT 336
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLL 293
++ E E +SP +A VL+ R E SE+ + G++ RL+V+S+++GCL+
Sbjct: 337 ISTKEFFEETFSPTVEAAVLLQPRCSE-KSER------DSGIISFTTRLLVSSSRIGCLI 389
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GKGG+II+EMR++T ++IRI+S + L K S++D +VQISG+ KDA+ V RLR N
Sbjct: 390 GKGGSIITEMRRLTKSNIRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRAN 449
Query: 353 HF 354
F
Sbjct: 450 LF 451
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 10/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +GAVIGKGGTII ++ E+GA I V +++ E D+ LIT++A E
Sbjct: 280 KEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLITISAKE-IYD 338
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
YSP +A V RL SEK + GL+ RL+V S+++GCLLGKGG II E
Sbjct: 339 HYSPTIEAAV----RLQPRCSEK---MERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDE 391
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MRK+T IRI + L K S++D +VQI+G+ KDA+ ++ RLR N F
Sbjct: 392 MRKLTKAIIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVF 444
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 13/219 (5%)
Query: 142 ILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVI 201
+ QRNS A S S + + + DR + Q+ +R LC K+G++I
Sbjct: 1 MAGQRNSYGKRAHSQSDYDIGGNKRRNSGDDRERFV---IDSQDTVYRYLCPARKIGSII 57
Query: 202 GKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY-------SPAQKAVVL 254
G+GG II+ L+ + + I VG T+P C+ER++T+ + + Y SPAQ A+
Sbjct: 58 GRGGEIIKQLRIDTKSKIRVGETVPGCEERVVTIYSPSDETNEYEDSGNYISPAQDALFR 117
Query: 255 VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
V ++I + ++ S V A+L+V S+Q+GC++GKGG I+ +R TG IRI+
Sbjct: 118 VHDKVI--AEDLQVEDDSEGSPQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRIL 175
Query: 315 SDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
D+ L C +D +VQISGE + +K A+Y + RL DN
Sbjct: 176 KDEHLPPCALSSDELVQISGEAAVLKKALYQIASRLHDN 214
>gi|224097170|ref|XP_002310862.1| predicted protein [Populus trichocarpa]
gi|222853765|gb|EEE91312.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
+Q +V FR++CS+ G +IG GG+++RALQ++ GA I + D+RL+TV+A E
Sbjct: 77 NEQSQVQFRMICSHGAAGRIIGTGGSVVRALQNQTGASIIFARPITNSDDRLVTVSALEN 136
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
ES +SPAQ A++LVF+R IE E+ + + V A L++ SN+V CL+G+GG +
Sbjct: 137 LESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNKVYCLIGRGGRVD 196
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQI 331
SEM + TG I+I+ DQ S+ND VVQ+
Sbjct: 197 SEMIETTGADIQIMQGDQFFDLASKNDAVVQV 228
>gi|147818880|emb|CAN73780.1| hypothetical protein VITISV_042181 [Vitis vinifera]
Length = 637
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 183/375 (48%), Gaps = 59/375 (15%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
++ +E+ R+LC DK+G VIG+GG+ I++++ +GA + V T + DE LITVT++E
Sbjct: 302 SRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDECLITVTSTES 361
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
+ S A +AV+L+ +++ + + V RL+V S +GC++GK G+II
Sbjct: 362 VDDLKSMAVEAVLLLQAKINDEDDDT-----------VAIRLLVPSKIIGCIIGKSGSII 410
Query: 301 SEMRKVTGTSIRI----------ISDQLLKCISE----NDRVVQI----SGEFSKVKDAV 342
+E+RK T +RI +D+L++ + E D +VQI + K +D
Sbjct: 411 NEIRKRTRADVRISKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDDALKDRDTG 470
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
+N T D+ +SG S SSVL P + P S+ +
Sbjct: 471 HN-TSAGTDSLYSGGAGL----SVSSVLPSAPPVA----PLSYDQRAETGSGLGLLSSSS 521
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
G + V + + +VG +S + L G
Sbjct: 522 LYGY---------------GSLSLFFAVKVVVVFNGEVGENAYGSMSSYSSKLYGG---- 562
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
+ T +T ++++P N +G V G+ G+N+ +R+ISGA + + + + DR+ +ISGTP
Sbjct: 563 --LPTPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTP 620
Query: 523 DETQAAQSLLQAFIL 537
++ + A++L+QAFI+
Sbjct: 621 EQKRTAENLIQAFIM 635
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 49/387 (12%)
Query: 169 LESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC 228
++ RV D + + + +RILC + +G+VIGK G +I +++ + A I V P
Sbjct: 20 IQKRRVNERDEKGSDELIVYRILCPDGVIGSVIGKSGKVINSIRQDTRAKIKVVDPFPGA 79
Query: 229 DERLITVTASE------------GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFS-SNKG 275
+R+IT+ + PAQ A++ V + ++ + L+ S K
Sbjct: 80 KDRVITIYCYVKEKEEVEVDDEFNDKQPLCPAQDALLKVHAAIVNAVAS--LENSDKKKK 137
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS----DQLLKCISENDRVVQI 331
+++V S+Q ++GK G I +R T +I+I + D C E D V I
Sbjct: 138 DKEECQILVPSSQSANVIGKAGATIKRLRSKTRANIKITAKDSTDPSHSCAMEFDNFVLI 197
Query: 332 SGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGVHSS 390
+G+ VK A++ + S+++ + +P + D S
Sbjct: 198 AGDSEAVKKALFAI---------------------SAIMYKFTPREEIPLDTTVPEAPPS 236
Query: 391 VAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH 450
+ + D P G + + S P + A V L+G SD+G W
Sbjct: 237 IIIPSDV--PIYPAGGFYPSADSIVSARSVPPVLAATHVP--ELQGYSDMGSTWPV---- 288
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
+ L + SG ++ + ++ P + IG V G GS++ +R+ SGA V V + +
Sbjct: 289 YSSNLPVVSGYGASRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKAD 348
Query: 511 STDRIVVISGTPDETQAAQSLLQAFIL 537
+ ++ ++ T ++A +L
Sbjct: 349 RDECLITVTSTESVDDLKSMAVEAVLL 375
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 175/378 (46%), Gaps = 81/378 (21%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG +++AL+ E A I V +P DER+I +
Sbjct: 42 ETIYRILCPVKKIGSVLGRGGDVVKALREETKAKIRVADPIPGADERVIIIFNYQNQPEL 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLIEGTSEKGL--DFSSNKGLLVNARLVV 284
E E+++S AQ A++ + +++ G+ + S V AR++V
Sbjct: 102 TDEAAETKFSDGLGNMKPHCFAQDALLKIHDKIVADEIHDGVAHEEKSESADDVTARILV 161
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 162 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLPSEDLPQCALKSDELVQISGAPSLVRKALY 221
Query: 344 NVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
++ RL + R ++ ++ R S + + H+ P
Sbjct: 222 EISTRLHQH------PRKENRPLEEIINASTQRKR---------ESPILLQHENPMLP-- 264
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
HL HS P P L + GL +H
Sbjct: 265 ----HL---HSDHPPPIPLLDP------------------YRSGLQYH------------ 287
Query: 464 AIVTNT---TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVIS 519
VT T ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S + ++++S
Sbjct: 288 --VTETEEFSIRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASGESLIIVS 345
Query: 520 GTPDETQAAQSLLQAFIL 537
++ ++A IL
Sbjct: 346 SKEVPSEPISPAIEALIL 363
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 95/162 (58%), Gaps = 12/162 (7%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
T+ +E S RILC+++ +G+VIGK G ++ ++ + GA I V + E LI V++ E
Sbjct: 289 TETEEFSIRILCASELIGSVIGKSGANVKRVEQQTGARIKVQEIDKDASGESLIIVSSKE 348
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SPA +A++L+ + + SEK + RLVV S++VGC+LG+GG +
Sbjct: 349 VPSEPISPAIEALILLHDK-VSAPSEKRHS---------STRLVVPSSKVGCILGEGGKV 398
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKD 340
I+EMR+ TG IR+ S K +S +D +VQ +G+ +D
Sbjct: 399 ITEMRRRTGAEIRVYSKADKPKYLSFDDELVQTAGQIHGRED 440
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 53/83 (63%)
Query: 454 GLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
G E G SA +T+E+ +P + + S+ G G NL +RQISGA++ +HE GS++
Sbjct: 437 GREDYRGLTSATGFLSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSE 496
Query: 514 RIVVISGTPDETQAAQSLLQAFI 536
+V I GT +E +AAQSLLQ FI
Sbjct: 497 SVVEIQGTLEEAKAAQSLLQGFI 519
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 38/205 (18%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
PS IS A+ L L D+V+ A ++++ S R++ + KVG ++G+GG +I ++
Sbjct: 350 PSEPIS--PAIEALILLHDKVS---APSEKRHSSTRLVVPSSKVGCILGEGGKVITEMRR 404
Query: 214 EAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS------EKG 267
GA I V YS A K L F + T+ E
Sbjct: 405 RTGAEIRV-----------------------YSKADKPKYLSFDDELVQTAGQIHGREDY 441
Query: 268 LDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDR 327
+S G L L + ++ + ++G GG ++E+R+++G +R+ ++
Sbjct: 442 RGLTSATGFLSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAH----AGSSES 497
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDN 352
VV+I G + K A + G + N
Sbjct: 498 VVEIQGTLEEAKAAQSLLQGFISAN 522
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
D VA + +V+ RIL ++VG ++GKGG+II+ L+S+ GA I V +P+C
Sbjct: 141 DGVAHEEKSESADDVTARILVQGNQVGCLLGKGGSIIQQLRSDTGAGIRVLPSEDLPQC 199
>gi|218200638|gb|EEC83065.1| hypothetical protein OsI_28176 [Oryza sativa Indica Group]
gi|222640076|gb|EEE68208.1| hypothetical protein OsJ_26373 [Oryza sativa Japonica Group]
Length = 431
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 178/355 (50%), Gaps = 46/355 (12%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E+ R+LC K+G VIGKGG I++++ E+GA I V + + +E +IT+T++E +
Sbjct: 121 ELVLRVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSNEATDDA 180
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
S A +AV+L+ S++ + N+G + +GCL+GKGG+I+++MR
Sbjct: 181 KSAAVEAVLLLQSKIND----------DNEGKV-----------IGCLIGKGGSIVNDMR 219
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
T +I I + + S +D +V++ GE ++DA+ + RLRD+ +++ +
Sbjct: 220 SKTKAAIYISKGEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVLRDSVDRQNSE 279
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+ T+ DP + A+ P Q + LG H D +++
Sbjct: 280 KDGKLTVATT------DPLYASSYPLPALL------PYRQQITPLGYDHRGDIERGLEVY 327
Query: 425 TAQTVTGV-HLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++ G L+ D G+S S+ G G + +E+ +P + + V
Sbjct: 328 PHSSLYGYSSLQAIDD---GYSAVSSYASKGY----GGRPP-----HMEMTIPASGLSKV 375
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
G++G+NL + +ISGA + + E + + ISGT ++ Q+A++L++AFI++
Sbjct: 376 MGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFIMS 430
>gi|118485588|gb|ABK94645.1| unknown [Populus trichocarpa]
Length = 294
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 10/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +GAVIGKGGTII ++ E+GA I V +++ E D+ LIT++A E
Sbjct: 29 KEFSLRVVCPTANIGAVIGKGGTIINQIRQESGATIKVDSSVAEGDDCLITISAKE-IYD 87
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
YSP +A V RL SEK + GL+ RL+V S+++GCLLGKGG II E
Sbjct: 88 HYSPTIEAAV----RLQPRCSEK---MERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDE 140
Query: 303 MRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MRK+T IRI + L K S++D +VQI+G+ KDA+ ++ RLR N F
Sbjct: 141 MRKLTKAIIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVF 193
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II ++ E+GA I V ++ E DE LI ++ E E
Sbjct: 281 KEFSVRLVCPTGNIGGVIGKGGMIINQIRQESGATIKVDSSTTEGDECLIAISTKEFFEE 340
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+SP +A V RL SEK + G++ RL+V ++++GCL+GKGG+II+E
Sbjct: 341 TFSPTIEAAV----RLQPRCSEK---VERDSGIISFTTRLLVPTSRIGCLIGKGGSIITE 393
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR++T +IRIIS + L K SE+D +VQISG+ KDA+ +V RLR N F
Sbjct: 394 MRRLTKANIRIISKENLPKIASEDDEMVQISGDLDIAKDALVHVLTRLRANLF 446
Score = 118 bits (296), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 106/181 (58%), Gaps = 18/181 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV-------T 236
++ +R +C K+G+VIG+GG I++ L+ E A I +G T+P C+ER++T+
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYSPSDETN 99
Query: 237 ASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF----SSNKGLLVNARLVVASNQVGCL 292
A EG + SPAQ A+ V R++ DF + G V A+L+V S+Q+GC+
Sbjct: 100 AVEGGGNYVSPAQDALFKVHDRVVA------EDFHGDQDDDGGQQVTAKLLVPSDQIGCV 153
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GKGG+I+ +R TG IRI+ D L C +D +VQI+G+ S VK A+ + RL D
Sbjct: 154 IGKGGSIVQNIRSETGAQIRILKDDHLPLCALSSDELVQITGDASVVKKALCQIASRLHD 213
Query: 352 N 352
N
Sbjct: 214 N 214
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 104/173 (60%), Gaps = 11/173 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY-- 245
FR LC K+G+VIG+GG I++ L+++ A I +G +P CDER++T+ +S + +
Sbjct: 46 FRYLCPVRKIGSVIGRGGDIVKQLRADTKAKIRIGDALPGCDERVVTIHSSSEETNHFDE 105
Query: 246 -----SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
SPAQ A+ V R+I + + D N V A+L+V S+Q+GC++GKGG I+
Sbjct: 106 TDDLVSPAQDALFRVHQRVIAEDAREDEDEERNH---VTAKLLVPSDQIGCVIGKGGQIV 162
Query: 301 SEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+R TG IRI+ D L C D +VQISGE + VK A++ + ++RDN
Sbjct: 163 QNIRSETGAQIRILKDDRLPPCALSTDELVQISGEAAVVKKALFQIAAQIRDN 215
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 105/173 (60%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R +C +G VIGKGG II ++ ++GA I V ++ E D+ LI ++ E E
Sbjct: 277 REFSVRFVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIIISTKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+SP +A V RL SEK + G++ RL+V ++++GCL+GKGGTI++E
Sbjct: 337 SFSPTIEAAV----RLQPRCSEK---VERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTE 389
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR++T +IRI+S D L K SE+D +VQISG+ KDA+ RLR N F
Sbjct: 390 MRRLTKANIRILSKDNLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLF 442
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/324 (31%), Positives = 168/324 (51%), Gaps = 40/324 (12%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASE 239
++ ++++ +++CS+ K+G VIGKGG I+ ++ +G+ I V + D+ +ITVTA+E
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P+ S A +AV+L+ ++ + +K V +L+V+S +GC++GK G+I
Sbjct: 372 SPDDLKSMAVEAVLLLQEKINDEDEDK-----------VKMQLLVSSKVIGCIIGKSGSI 420
Query: 300 ISEMRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF---- 354
ISE+RK T I I + KC ND +V+ISGE S V+DA+ + RLRD+
Sbjct: 421 ISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRE 480
Query: 355 SGTLNTARTRS-TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+G+ N RS ++ + +S + L P SF S DF++ P T G S
Sbjct: 481 TGSRNQPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVDFNRRPET------GSSM 534
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S+ PSS G++ GS VG S + L G + +TT+E+
Sbjct: 535 SM-LPSS---------GGIYGYGSFPVGNTSYGSNSSYSSNLYGG------LPQSTTMEV 578
Query: 474 IVPENVIGSVYGENGSNLLRLRQI 497
+P N +G V G G NL +R++
Sbjct: 579 RIPANAVGKVMGRGGGNLDNIRRV 602
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 63/370 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V +RILC + +G+VIGK G +I ++ E A I V P C ER+IT+ S
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 239 ---EGPESRYS----PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGC 291
E E YS AQ A++ V ++ + + ++ RL+V S+Q
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 292 LLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
++GK G+II +R T ++++ +SD C + D +V ISGE VK A++ V
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAV-- 221
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-------KDPASFGVHSSVAVSHDFSQP 400
S+++ + SP ++ + PAS + S +++ + Q
Sbjct: 222 -------------------SAIMYKVSPREQIPLDTTVQEVPASIIIPSDLSI---YPQA 259
Query: 401 PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
L D + H + S + T G + V + + H GG
Sbjct: 260 GLYPSQDSI-FQHGANVSSF--IGTLPQGYGENAANPVPVFSASALPVVHGFGG------ 310
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI-- 518
S+ +++I + IG V G+ G + +RQ SG+ + V++ R D V+
Sbjct: 311 --SSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVT 368
Query: 519 -SGTPDETQA 527
+ +PD+ ++
Sbjct: 369 ATESPDDLKS 378
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 101/350 (28%), Positives = 169/350 (48%), Gaps = 48/350 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGKGG I+ + ++GA I++ + C ER++TVT S
Sbjct: 19 LTIRLIMQGKEVGSIIGKGGETIKKFREQSGARINISDS--SCAERIVTVTGST------ 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A ++ + E S + S+ K V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 71 EAINNAFEMITKKFEEDVSNNMANSSTPKPP-VTLRLVVPASQCGSLIGKGGSKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG S+++ D L + +R V ISG + VY + + ++ G R +
Sbjct: 130 NTGASVQVAGDMLHQ---STERAVTISGTPEAITKCVYQICCVMLESPPKGATIPYRPKP 186
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSH-DFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
T++ T T P ++ VH + AV + DF + + HL + H+ P
Sbjct: 187 TNA--TATHP--------AYAVHGNYAVPYPDFMK------LHHLTMQHTPFLPG----Q 226
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
T T T +++ G G + S +G++ A T EI++P ++IG V
Sbjct: 227 TPFTPTALNM------GYGVANAAS---------AGTQVATTGQQTYEIMIPNDLIGCVI 271
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQISGA + + + GS DR V ISGT + A L+ +
Sbjct: 272 GRGGAKINEIRQISGATIKIANSQEGSNDRSVTISGTVEAINLAHFLINS 321
>gi|224097168|ref|XP_002310861.1| predicted protein [Populus trichocarpa]
gi|222853764|gb|EEE91311.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
+Q +V FR++C + G++IGKGG+++RALQ++ GA I + + D RL+TV+A E
Sbjct: 251 NEQLQVQFRMICPHGAAGSIIGKGGSVVRALQNQTGASIILAPPITNSDGRLVTVSALEN 310
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
ES +SPAQ A++LVF+R IE E+ + + V A L++ SN+V CL+ +GG I
Sbjct: 311 LESSHSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNRVSCLIERGGRID 370
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQI 331
SEM + TG I+I+ DQ C S ND V+Q+
Sbjct: 371 SEMIETTGADIQILQGDQFFYCASNNDVVLQV 402
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 93/182 (51%), Gaps = 20/182 (10%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP 241
Q +V+FR++C K+GA+IG G++I ++ E G + + + R I V S P
Sbjct: 22 QPGQVAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHCEEAVKGSEHRAIVVAGSASP 81
Query: 242 ESR----------YSPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVG 290
E + S AQ+AVV V R+ E + K G D GLL N ++Q+G
Sbjct: 82 ERKIAVGEDETVEVSAAQEAVVRVLERMWEVDAVKDGGDCEGYCGLLAN------TSQIG 135
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS-KVKDAVYNVTGRL 349
++G+ G I M++ +G I I+ L C + D+++QI+G + VK AV +T L
Sbjct: 136 AVVGREGRNIKRMKRASGAHIWILPAPL--CALKEDQLIQITGSSTVAVKKAVIAITSCL 193
Query: 350 RD 351
+D
Sbjct: 194 QD 195
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/175 (37%), Positives = 108/175 (61%), Gaps = 13/175 (7%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L++E A I +G ++P CDER++T+ ++ +G
Sbjct: 40 YRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCDERVVTIFSTSRKTNTIDG 99
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL--LVNARLVVASNQVGCLLGKGGT 298
E PAQ A+ V RL S++GL ++ + V RL+V S+Q+GC++GKGG
Sbjct: 100 AEDEVCPAQDALFRVHERL---ASDEGLGNEDSEEISPQVTVRLLVPSDQIGCIIGKGGQ 156
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
II +R TG IR++S D + C D ++QISG+ V+ A++ V+ RL +N
Sbjct: 157 IIQGIRSETGAQIRVLSNDHIPACAISGDELLQISGDTVVVRKALHQVSSRLHNN 211
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 106/173 (61%), Gaps = 8/173 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASEGPE 242
+E S R+LC+ VG VIGKGG II+ ++ E+GA I V ++ + D+ +ITV+A E E
Sbjct: 276 KEFSLRLLCAAANVGGVIGKGGGIIKQIRQESGALIKVASSNSDPDDDCIITVSAKEFFE 335
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SP A V + R E + + + S RL+V+++++GCL+GKGG+II+E
Sbjct: 336 DPVSPTIDAAVRLQPRCSEKSDLESAEQS------YTTRLLVSTSRIGCLIGKGGSIITE 389
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+R+ + ++RI+S + + K +E+D +VQI+G ++A+ + RL+ N F
Sbjct: 390 IRRTSRANVRILSKENVPKVAAEDDEMVQITGGLDVARNALVQIATRLKANFF 442
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC 228
+V+ R+L +D++G +IGKGG II+ ++SE GA I V + +P C
Sbjct: 135 QVTVRLLVPSDQIGCIIGKGGQIIQGIRSETGAQIRVLSNDHIPAC 180
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 121 bits (303), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 108/179 (60%), Gaps = 11/179 (6%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--- 238
+ ++ +R LC K+G++IG+GG I++ L+ + + I +G T+P C+ER++T+ +S
Sbjct: 39 EPEDTVYRYLCPGRKIGSIIGRGGEIVKQLRVDTKSKIRIGETVPGCEERVVTIYSSSDE 98
Query: 239 ----EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+ ++ SPAQ A+ V R++ SE+ S + V RL+V S+Q+GC++G
Sbjct: 99 TNAFDDSDTFVSPAQDALFRVHDRVV---SEEVHGEDSEEASQVTVRLLVPSDQIGCVIG 155
Query: 295 KGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
KGG II +R +G +RI+ D L C +D +VQISGE S V+ A+Y + RL DN
Sbjct: 156 KGGQIIQSIRSESGAQVRILKDDHLPSCALSSDELVQISGEPSLVRKALYQIASRLHDN 214
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 10/174 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPE 242
+E S R++C +G VIGKGG II ++ E+GA I V +T E D+ LI ++A E E
Sbjct: 280 KEFSLRLVCPIGNIGGVIGKGGVIINQIRQESGAAIKVDSTSAAEADDCLIAISAKEFFE 339
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIIS 301
+SP +A V RL SEK + G++ RL+V ++++GCL+GKGG II+
Sbjct: 340 DTFSPTIEAAV----RLQPRCSEK---VERDSGIVSFTTRLLVPTSRIGCLIGKGGAIIT 392
Query: 302 EMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
EMRK+T +IRI+S + L K SE+D +VQI+G+ KDA+ VT RLR N F
Sbjct: 393 EMRKLTKANIRILSKENLPKVASEDDEMVQIAGDLDVAKDALIQVTTRLRANLF 446
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 107/181 (59%), Gaps = 18/181 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV-------T 236
++ +R +C K+G+VIG+GG I++ L+ E A I +G T+P C+ER++T+
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRIGETVPGCEERVVTIYGPSDETN 99
Query: 237 ASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF----SSNKGLLVNARLVVASNQVGCL 292
A EG + SPAQ A+ V R++ DF + G V A+L+V S+Q+GC+
Sbjct: 100 AVEGGGNYVSPAQDALFKVHDRVVA------EDFHGDQDDDGGQQVTAKLLVPSDQIGCV 153
Query: 293 LGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GKGG+I+ +R TG IRI+ D L C +D +VQI+G+ + VK A+Y + RL D
Sbjct: 154 IGKGGSIVQNIRGETGAQIRILKDDHLPMCALSSDELVQITGDAAVVKKALYQIASRLHD 213
Query: 352 N 352
N
Sbjct: 214 N 214
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 107/173 (61%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II ++ ++GA I V ++ E DE LI ++ E E
Sbjct: 281 KEFSVRLVCPTGNIGGVIGKGGMIINQIRQDSGATIKVDSSTIEGDECLIAISTKEFFEE 340
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+SP +A V RL SEK + G++ RL+V + ++GCL+GKGG+II++
Sbjct: 341 TFSPTIEAAV----RLQPRCSEK---VERDSGIISFTTRLLVPTTRIGCLIGKGGSIITD 393
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR++T +IRIIS + L K +E+D +VQISG+ KDA+ +V RLR N F
Sbjct: 394 MRRLTKANIRIISKENLPKIANEDDEMVQISGDLDVAKDALVHVLTRLRANLF 446
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 108/174 (62%), Gaps = 11/174 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L+++ A I +G ++P CDER+IT+ +S E
Sbjct: 42 YRYLCASRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVITIFSSSRETNTVED 101
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTI 299
E + PAQ A+ V +LI T + D + +GL V RL+V S+Q+GC++GKGG I
Sbjct: 102 TEDKVCPAQDALFRVHEKLI--TDDGPGDEENEEGLAQVIVRLLVPSDQIGCIIGKGGHI 159
Query: 300 ISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I +R TG+ IR++S + L C D ++QISG+ V+ A+ V+ RL DN
Sbjct: 160 IQGIRSDTGSHIRVLSTEHLPACAISGDELLQISGDPLVVRKALLQVSSRLHDN 213
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 278 KEFSLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKVDSSSAE-DDCIITVSAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V + R E T + + S RL+V+++++GCL+GKGG+II+E+
Sbjct: 337 PISPTIDATVRLQPRCSEKTDPESGEPS------YTTRLLVSTSRIGCLIGKGGSIITEI 390
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRI+S + + K SE++ +VQISG+ K A+ +T RL+ N F
Sbjct: 391 RRTSRANIRILSKENVPKVASEDEEMVQISGDLDVAKHALVQITTRLKANFF 442
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC 228
+V R+L +D++G +IGKGG II+ ++S+ G+ I V +T +P C
Sbjct: 137 QVIVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSHIRVLSTEHLPAC 182
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 108/174 (62%), Gaps = 11/174 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L+++ A I +G ++P CDER+IT+ +S E
Sbjct: 42 YRYLCTSRKIGSIIGRGGEIAKQLRTDTQAKIRIGESVPGCDERVITIFSSSRETNTIED 101
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTI 299
E + PAQ A+ V +LI + D + +GL V RL+V S+Q+GC++GKGG I
Sbjct: 102 TEDKVCPAQDALFRVHEKLI--ADDGPGDEENEEGLAQVTVRLLVPSDQIGCIIGKGGHI 159
Query: 300 ISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I +R TG+ IR++S++ L C D ++QISG+ V+ A+ V+ RL DN
Sbjct: 160 IQGIRSDTGSQIRVLSNERLPACGISGDELLQISGDPLVVRKALLQVSSRLHDN 213
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 278 KDFSLRLLCAASDVGGVIGKGGGIIKQIRQESGAFIKVDSSSAE-DDCIITVSAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V + + E T + + S RL+V+++Q+GCL+GKGG+II+E+
Sbjct: 337 PVSPTIDATVRLQPKCSEKTDPESGEPS------YTTRLLVSTSQIGCLIGKGGSIITEI 390
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRI+S + + K SE++ +VQISG+ + A+ +T RL+ N F
Sbjct: 391 RRTSRANIRILSKENVPKVASEDEEMVQISGDLEVARHALVQITTRLKANFF 442
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+V+ R+L +D++G +IGKGG II+ ++S+ G+ I V +P C
Sbjct: 137 QVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNERLPAC 182
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 12/178 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS----- 238
++ +R LC K+G+VIG+GG I++ L+ + + I +G T+P DER+IT+ ++
Sbjct: 41 EDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSASNETN 100
Query: 239 --EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVNARLVVASNQVGCLLGK 295
E SPAQ+A+ + R++ ++ +D S G V ARL+V S+Q+GC++GK
Sbjct: 101 SLEESSDYVSPAQEALFKIHDRVV---ADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGK 157
Query: 296 GGTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GG I+ +R TG +RI+ D L +C +D +VQISGE VK A+Y + RL DN
Sbjct: 158 GGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDN 215
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 106/173 (61%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C + +G VIGKGG II ++ E A I V ++ E D+ LI +++ E E
Sbjct: 269 KEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFED 328
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
YSP +A + RL SEK + G++ RL+V ++++GCL+GKGG II+E
Sbjct: 329 SYSPTLEAAL----RLQPRCSEK---VERDSGIISFTTRLLVPTSRIGCLIGKGGAIITE 381
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+R++T +IRI+S + L K E+D +VQISG+ K+A+ ++ RLR N F
Sbjct: 382 LRRLTKANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLF 434
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 51/213 (23%)
Query: 151 TTAPSSSISYVS-AVRPLSLESDRVATLDARTQQQE-----VSFRILCSNDKVGAVIGKG 204
T + S YVS A L DRV D + E V+ R+L +D++G +IGKG
Sbjct: 99 TNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGKG 158
Query: 205 GTIIRALQSEAGAFISV--GATMPEC-----------DERLITVTASEGPESR------- 244
G I++ +++E GA + + +P C E LI A SR
Sbjct: 159 GQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDNPSR 218
Query: 245 ------------YS-------PAQKAVVLVFSRLIE---GTSEKGLDFSSNKGLLVNARL 282
YS P A ++ + L+ G D SS + + RL
Sbjct: 219 SQHLLASAIPGVYSSGGSLMAPTHGAPIMGLAPLVSPYGGYKAPREDLSSKE---FSLRL 275
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ + +G ++GKGG II+++R+ T +I++ S
Sbjct: 276 ICPTENIGGVIGKGGAIINQIRQETKAAIKVDS 308
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 12/178 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS----- 238
++ +R LC K+G+VIG+GG I++ L+ + + I +G T+P DER+IT+ ++
Sbjct: 41 EDTVYRYLCPVKKIGSVIGRGGEIVKQLRIDTKSKIRIGETVPGSDERVITIYSASNETN 100
Query: 239 --EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVNARLVVASNQVGCLLGK 295
E SPAQ+A+ + R++ ++ +D S G V ARL+V S+Q+GC++GK
Sbjct: 101 SLEESSDYVSPAQEALFKIHDRVV---ADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGK 157
Query: 296 GGTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
GG I+ +R TG +RI+ D L +C +D +VQISGE VK A+Y + RL DN
Sbjct: 158 GGQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDN 215
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 106/173 (61%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C + +G VIGKGG II ++ E A I V ++ E D+ LI +++ E E
Sbjct: 269 KEFSLRLICPTENIGGVIGKGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFED 328
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
YSP +A + RL SEK + G++ RL+V ++++GCL+GKGG II+E
Sbjct: 329 SYSPTLEAAL----RLQPRCSEK---VERDSGIISFTTRLLVPTSRIGCLIGKGGAIITE 381
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+R++T +IRI+S + L K E+D +VQISG+ K+A+ ++ RLR N F
Sbjct: 382 LRRLTKANIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLF 434
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 51/213 (23%)
Query: 151 TTAPSSSISYVS-AVRPLSLESDRVATLDARTQQQE-----VSFRILCSNDKVGAVIGKG 204
T + S YVS A L DRV D + E V+ R+L +D++G +IGKG
Sbjct: 99 TNSLEESSDYVSPAQEALFKIHDRVVADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGKG 158
Query: 205 GTIIRALQSEAGAFISV--GATMPEC-----------DERLITVTASEGPESR------- 244
G I++ +++E GA + + +P C E LI A SR
Sbjct: 159 GQIVQNIRTETGAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDNPSR 218
Query: 245 ------------YS-------PAQKAVVLVFSRLIE---GTSEKGLDFSSNKGLLVNARL 282
YS P A ++ + L+ G D SS + + RL
Sbjct: 219 SQHLLASAIPGVYSSGGSLMAPTHGAPIMGLAPLVSPYGGYKAPREDLSSKE---FSLRL 275
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ + +G ++GKGG II+++R+ T +I++ S
Sbjct: 276 ICPTENIGGVIGKGGAIINQIRQETKAAIKVDS 308
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 157/345 (45%), Gaps = 63/345 (18%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV------- 235
+ + FR LC K+G+VIG+GG I++ L+ + + I +G +P CDER+IT+
Sbjct: 41 RDDTVFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKIRIGEAIPGCDERVITIYSPSDET 100
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
A E SPAQ A+ + R++ ++ + SS V A+L+V S+Q+GC+LG+
Sbjct: 101 NAFGDGEKVLSPAQDALFRIHDRVVADDAQS--EDSSEGEQQVTAKLLVPSDQIGCILGR 158
Query: 296 GGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
GG I+ +R TG IRII D+ + C +D ++QISGE VK A++ + RL +N
Sbjct: 159 GGQIVQNIRSETGAQIRIIKDRNMPLCALNSDELIQISGEVLIVKKALHQIASRLHENP- 217
Query: 355 SGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
+RS + + S A+S + P M H G
Sbjct: 218 --------SRSQNLL--------------------SSAISGGY---PSGSLMSHAG---- 242
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
P+L + G + R D WS+ L T + ++
Sbjct: 243 -----GPRLVGIAPLMGSYGRDGGD----WSRPLYQPP--------RNDPPATEFFIRLV 285
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
P I SV G+ G+ + +LRQ + A + V R D ++ IS
Sbjct: 286 SPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 330
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E R++ + + +VIGKGG +I L+ E A I V ++ E ++ LIT++A E E
Sbjct: 279 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 338
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISEM 303
YSP +AV+ RL SEK + GL+ RL+V S+++GC+LGKGG II+EM
Sbjct: 339 YSPTIEAVM----RLQPKCSEK---VERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEM 391
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R++T +IRI+ + L K S++D +VQISGE K+A+ +T RLR N F
Sbjct: 392 RRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 443
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 172 DRVATLDARTQ-----QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
DRV DA+++ +Q+V+ ++L +D++G ++G+GG I++ ++SE GA I +
Sbjct: 122 DRVVADDAQSEDSSEGEQQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIIKDRN 181
Query: 225 MPEC 228
MP C
Sbjct: 182 MPLC 185
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L++E A I +G ++P C+ER+IT+ +S +
Sbjct: 40 YRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCEERVITIFSSSRRTNTIDD 99
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
E + PAQ A+ V RL S G + S V RL+V S+Q+GC+LGKGG II
Sbjct: 100 AEDKVCPAQDALFRVHERLATDES-FGNEDSEEISPQVTVRLLVPSDQIGCILGKGGHII 158
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+R TG IR++S D + C D ++QISG+ VK A+ V+ RL +N
Sbjct: 159 QGIRSETGAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVSSRLHNN 211
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASEGPE 242
+E S R+LC+ VG VIGKGG II+ ++ E+GA I V ++ + D+ +ITV+A E E
Sbjct: 276 KEFSLRLLCAAANVGGVIGKGGGIIKQIRQESGALIKVASSNSDPDDDCIITVSAKEFFE 335
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SP A V + R E + + + S RL+V+++++GCL+GKGG+II+E
Sbjct: 336 DPVSPTIDAAVRLQLRCSEKSDSELAEQS------YTTRLLVSTSRIGCLIGKGGSIITE 389
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+R+ + +IRI+S + + K +E++ +VQISG + A+ + RL+ N F
Sbjct: 390 IRRTSRANIRILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRLKANFF 442
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC 228
+V+ R+L +D++G ++GKGG II+ ++SE GA I V + +P C
Sbjct: 135 QVTVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPAC 180
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 119 bits (297), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 103/173 (59%), Gaps = 9/173 (5%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L++E A I +G ++P C+ER+IT+ +S +
Sbjct: 40 YRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRIGESVPGCEERVITIFSSSRRTNTIDD 99
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
E + PAQ A+ V RL S G + S V RL+V S+Q+GC+LGKGG II
Sbjct: 100 AEDKVCPAQDALFRVHERLATDES-FGNEDSEEISPQVTVRLLVPSDQIGCILGKGGHII 158
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+R TG IR++S D + C D ++QISG+ VK A+ V+ RL +N
Sbjct: 159 QGIRSETGAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVSSRLHNN 211
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER-LITVTASEGPE 242
+E S R+LC+ VG VIGKGG II+ ++ E+GA I V ++ + D+ +ITV+A E E
Sbjct: 276 KEFSLRLLCAAANVGGVIGKGGGIIKQIRQESGALIKVASSNSDPDDDCIITVSAKEFFE 335
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SP A V + R E + + + S RL+V+++++GCL+GKGG+II+E
Sbjct: 336 DPVSPTIDAAVRLQLRCSEKSDSELAEQS------YTTRLLVSTSRIGCLIGKGGSIITE 389
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+R+ + +IRI+S + + K +E++ +VQISG + A+ + RL+ N F
Sbjct: 390 IRRTSRANIRILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRLKANFF 442
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC 228
+V+ R+L +D++G ++GKGG II+ ++SE GA I V + +P C
Sbjct: 135 QVTVRLLVPSDQIGCILGKGGHIIQGIRSETGAQIRVLSKDHIPAC 180
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 111/181 (61%), Gaps = 11/181 (6%)
Query: 178 DARTQQ---QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
D R++ +E + R++C + VGAVIGKGG II+ L+ E+GA I V + E D+ +I
Sbjct: 261 DGRSKSSSVKEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIF 320
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
V+A E E + SP A + + R E T ++ D ++ RL+V S++VGCL+G
Sbjct: 321 VSAKEAFEDQ-SPTIDATMRLQPRSSEKTEKESGD------AILTTRLLVPSSRVGCLIG 373
Query: 295 KGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
KGG+II+EMR T SIR++S + L K SE+D +VQI+G+ + +A+ V RLR N
Sbjct: 374 KGGSIINEMRNSTRASIRVLSKENLPKVASEDDEMVQITGDANVATNALLQVLMRLRANT 433
Query: 354 F 354
F
Sbjct: 434 F 434
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA------ 237
++ FR LC K+G++IG GG I + L++E + I + T+P C+ER++T+ +
Sbjct: 41 EDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETN 100
Query: 238 -SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
SE SPAQ A+ V R++ D ++ + V R++V S+Q+GC++GKG
Sbjct: 101 VSEDTGDLISPAQDALFRVHDRVLAEDLRMDEDLEDHQQITV--RMLVPSDQIGCVIGKG 158
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G +I +R TG IR++ S+ L C +D ++QI+GE + VK A+Y V RL DN
Sbjct: 159 GQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARLHDN 215
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 174/366 (47%), Gaps = 47/366 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GATMP--ECDERLIT 234
R + + RIL + + +IGK GT I+ L+S+ A I V A+ P C
Sbjct: 136 RKMKDKEECRILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCAMDFDN 195
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
S P+ S A +A++L+ ++ + + V+ RL+V +GC++G
Sbjct: 196 FIMS--PDDLKSMAVEAILLLQGKINDEDDD-----------TVSIRLLVPCKVIGCIIG 242
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
K G+II+E+R+ T IRI Q KC +D +V++ GE V+DA+ + RLRD+
Sbjct: 243 KSGSIINEIRRRTKADIRISKGQKPKCADSSDELVEVLGEVGSVRDALVQIVLRLRDD-- 300
Query: 355 SGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-PPLTQGMDHLGLSH 413
L SV DP G S ++V S PP+T L
Sbjct: 301 --ALKEKDGSHNPSVGA---------DPLYSG-GSGISVPSLLSSVPPVTP----LAYDQ 344
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
P + + + ++ GS +G G+ S+ L G + +T+E
Sbjct: 345 R---PETGSGLGLLSSSNLYGYGSLTMGDNGYDSMSSYSSSKLYGG------LPPPSTLE 395
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++VP N +G V G+ G+N+ +R+ISGA + + + + DRI ISGTP++ +AA++L+
Sbjct: 396 MLVPANAVGKVLGKGGANIANIRKISGAMIEISDAKSARGDRIAHISGTPEQKRAAENLI 455
Query: 533 QAFILT 538
QAFI+
Sbjct: 456 QAFIMA 461
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 19/197 (9%)
Query: 173 RVATLDARTQQQE-VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER 231
RV D R E V++RILC ++ +G+VIGK G +I +++ E A + V P ++R
Sbjct: 25 RVNDKDERGNNDELVAYRILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVDPFPGPNDR 84
Query: 232 LIT----VTASEGPE--------SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
+IT V E E + AQ A++ V S + S LD
Sbjct: 85 VITIYCYVKKKEDVELDDEFHDHQPFCAAQDALLRVHSAISNAVSSV-LDSDRKMKDKEE 143
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII----SDQLLKCISENDRVVQISGEF 335
R++V S+Q ++GK GT I ++R T +I++ SD C + D + +
Sbjct: 144 CRILVPSSQSANIIGKAGTTIKKLRSKTRATIKVTPKDASDPTHSCAMDFDNFIMSPDDL 203
Query: 336 -SKVKDAVYNVTGRLRD 351
S +A+ + G++ D
Sbjct: 204 KSMAVEAILLLQGKIND 220
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
I+ P+ VIGSV G+NG + +RQ + AKV V +P G DR++ I
Sbjct: 43 ILCPDEVIGSVIGKNGKVINSIRQETRAKVKVVDPFPGPNDRVITI 88
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 107/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E + R++C + VGAVIGKGG II+ L+ E+GA I V + E D+ +I V+A E E
Sbjct: 270 KEFAVRLVCPTENVGAVIGKGGGIIKQLRQESGASIKVDSAAAEGDDCIIFVSAKEAFED 329
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ SP A + + R E T ++ D ++ RL+V S++VGCL+GKGG+II+EM
Sbjct: 330 Q-SPTIDATMRLQPRSSEKTEKESGD------AILTTRLLVPSSRVGCLIGKGGSIINEM 382
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R T SIR++S + L K SE+D +VQI+G+ + +A+ V RLR N F
Sbjct: 383 RNSTRASIRVLSKENLPKVASEDDEMVQITGDANVAANALLQVLMRLRANTF 434
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 103/177 (58%), Gaps = 10/177 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA------ 237
++ FR LC K+G++IG GG I + L++E + I + T+P C+ER++T+ +
Sbjct: 41 EDTVFRYLCPTGKIGSIIGVGGDIAKQLRTETNSKIRISETIPGCEERVVTIYSGSEETN 100
Query: 238 -SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
SE SPAQ A+ V R++ D ++ + V R++V S+Q+GC++GKG
Sbjct: 101 VSEDTGDLISPAQDALFRVHDRVLAEDLRMDEDLEDHQQITV--RMLVPSDQIGCVIGKG 158
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G +I +R TG IR++ S+ L C +D ++QI+GE + VK A+Y V RL DN
Sbjct: 159 GQVIQNLRSETGAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARLHDN 215
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 65/346 (18%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV------ 235
+ + FR LC K+G+VIG+GG I++ L+++ + I +G +P CDER+IT+
Sbjct: 46 DRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDE 105
Query: 236 -TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
A E SPAQ A+ + R++ + + S V A+L+V S+Q+GC+LG
Sbjct: 106 TNAFGDGEKVLSPAQDALFRIHDRVVADDARS--EDSPEGEKQVTAKLLVPSDQIGCILG 163
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+GG I+ +R TG IRI+ D+ + C +D ++QISGE VK A+ + RL +N
Sbjct: 164 RGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENP 223
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+RS ++L+ + Y P M H G
Sbjct: 224 ---------SRS-QNLLSSSGGY------------------------PAGSLMSHAG--- 246
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
P+L + G + R + D WS+ L T + +
Sbjct: 247 ------GPRLVGLAPLMGSYGRDAGD----WSRPLYQPP--------RNDPPATEFFIRL 288
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+ P I SV G+ G+ + +LRQ + A + V R D ++ IS
Sbjct: 289 VSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/172 (40%), Positives = 105/172 (61%), Gaps = 9/172 (5%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E R++ + + +VIGKGG +I L+ E A I V ++ E ++ LIT++A E E
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISEM 303
YSP +AV+ RL S+K + GL+ RL+V S+++GC+LGKGG II+EM
Sbjct: 343 YSPTIEAVM----RLQPKCSDK---VERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEM 395
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R++T +IRI+ + L K S++D +VQISGE K+A+ +T RLR N F
Sbjct: 396 RRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 62/200 (31%)
Query: 172 DRVATLDARTQ-----QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
DRV DAR++ +++V+ ++L +D++G ++G+GG I++ ++SE GA I +
Sbjct: 128 DRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRN 187
Query: 225 MPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-----L 276
MP C + LI ++ +KA++ + SRL E S SS+ G L
Sbjct: 188 MPLCALNSDELIQISGE------VLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSL 241
Query: 277 LVNA-----------------------------------------RLVVASNQVGCLLGK 295
+ +A RLV + ++GK
Sbjct: 242 MSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGK 301
Query: 296 GGTIISEMRKVTGTSIRIIS 315
GG +I+++R+ T +I++ S
Sbjct: 302 GGALINQLRQETRATIKVDS 321
>gi|388511497|gb|AFK43810.1| unknown [Lotus japonicus]
Length = 279
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 106/173 (61%), Gaps = 9/173 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II ++ ++GA I V ++ E D+ LI ++ E +
Sbjct: 12 REFSVRVVCPTGNIGGVIGKGGAIINQIRQDSGATIKVDSSATEGDDCLIAISTKEFFDD 71
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISE 302
+SP +A V RL S+K + G++ RL+V S+++GCL+GKGGTII+E
Sbjct: 72 SFSPTIEAAV----RLQPRCSDK---VERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITE 124
Query: 303 MRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
MR++T +IRI+ + L K SE+D +VQISG+ KDA+ V RL+ N F
Sbjct: 125 MRRLTKANIRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLF 177
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 155/346 (44%), Gaps = 65/346 (18%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV------ 235
+ + FR LC K+G+VIG+GG I++ L+++ + I +G +P CDER+IT+
Sbjct: 46 DRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDE 105
Query: 236 -TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
A E SPAQ A+ + R++ + + S V A+L+V S+Q+GC+LG
Sbjct: 106 TNAFGDGEKVLSPAQDALFRIHDRVVADDARS--EDSPEGEKQVTAKLLVPSDQIGCILG 163
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+GG I+ +R TG IRI+ D+ + C +D ++QISGE VK A+ + RL +N
Sbjct: 164 RGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENP 223
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+RS ++L+ + Y P M H G
Sbjct: 224 ---------SRS-QNLLSSSGGY------------------------PAGSLMSHAG--- 246
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
P+L + G + R + D WS+ L T + +
Sbjct: 247 ------GPRLVGLAPLMGSYGRDAGD----WSRPLYQPP--------RNDPPATEFFIRL 288
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+ P I SV G+ G+ + +LRQ + A + V R D ++ IS
Sbjct: 289 VSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 107/178 (60%), Gaps = 11/178 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E R++ + + +VIGKGG +I L+ E A I V ++ E ++ LIT++A E E
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISEM 303
YSP +AV+ RL S+K + GL+ RL+V S+++GC+LGKGG II+EM
Sbjct: 343 YSPTIEAVM----RLQPKCSDK---VERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEM 395
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
R++T +IRI+ + L K S++D +VQ++ +K ++ + RLR +F+ ++N+
Sbjct: 396 RRMTKANIRILGKENLPKVASDDDEMVQVNFMVLLLKFSLQFLLSRLR--YFTWSVNS 451
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 66/217 (30%)
Query: 172 DRVATLDARTQ-----QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
DRV DAR++ +++V+ ++L +D++G ++G+GG I++ ++SE GA I +
Sbjct: 128 DRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRN 187
Query: 225 MPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-----L 276
MP C + LI ++ +KA++ + SRL E S SS+ G L
Sbjct: 188 MPLCALNSDELIQISGE------VLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSL 241
Query: 277 LVNA-----------------------------------------RLVVASNQVGCLLGK 295
+ +A RLV + ++GK
Sbjct: 242 MSHAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGK 301
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
GG +I+++R+ T +I++ S + ND ++ IS
Sbjct: 302 GGALINQLRQETRATIKVDSSR----TEGNDCLITIS 334
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ +R LC K+G++IG+GG I + L+SE + I +G TMP C+ER++T+ +S +
Sbjct: 107 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 166
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
+ SPAQ A+ V R++ G E D + V R++V S+Q+GC++GKG
Sbjct: 167 PFGDTGELVSPAQDALFRVHDRIVAG--ELPADEEPEEAQQVTVRMLVPSDQIGCVIGKG 224
Query: 297 GTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G +I +R T IRI+ D+ L C +D ++QI G+ S V+ A++ + RL +N
Sbjct: 225 GQVIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHEN 281
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II+ ++ E+GA I V ++ E D+ +I ++A E E
Sbjct: 318 KEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEFFED 377
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A + RL SEK SS+ +V RL+V S+++GCL+GKGG IISEM
Sbjct: 378 P-SPTIDAAL----RLQPRCSEKAERESSDS--VVTTRLLVPSSRIGCLIGKGGAIISEM 430
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
R VT +IRI+S + L K SE+D +VQI+GE + +A+ VT RL+ N F A
Sbjct: 431 RSVTRANIRILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLFEREGAIAA 490
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSS 390
T L P S + D + +G S
Sbjct: 491 IPPTLPYL----PMSDMSDGSKYGSRDS 514
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+ Q+V+ R+L +D++G VIGKGG +I+ ++SE A I + +P C
Sbjct: 202 EAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSETRAQIRILKDEHLPPC 250
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 104/177 (58%), Gaps = 10/177 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ +R LC K+G++IG+GG I + L+SE + I +G TMP C+ER++T+ +S +
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
+ SPAQ A+ V R++ G E D + V R++V S+Q+GC++GKG
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAG--ELPADEEPEEAQQVTVRMLVPSDQIGCVIGKG 158
Query: 297 GTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G +I +R T IRI+ D+ L C +D ++QI G+ S V+ A++ + RL +N
Sbjct: 159 GQVIQNIRSETRAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHEN 215
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II+ ++ E+GA I V ++ E D+ +I ++A E E
Sbjct: 252 KEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEFFED 311
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A + RL SEK SS+ +V RL+V S+++GCL+GKGG IISEM
Sbjct: 312 P-SPTIDAAL----RLQPRCSEKAERESSDS--VVTTRLLVPSSRIGCLIGKGGAIISEM 364
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
R VT +IRI+S + L K SE+D +VQI+GE + +A+ VT RL+ N F A
Sbjct: 365 RSVTRANIRILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLFEREGAIAA 424
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSS 390
T L P S + D + +G S
Sbjct: 425 IPPTLPYL----PMSDMSDGSKYGSRDS 448
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+ Q+V+ R+L +D++G VIGKGG +I+ ++SE A I + +P C
Sbjct: 136 EAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSETRAQIRILKDEHLPPC 184
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 24/186 (12%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQPEL 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D SS+ V AR++V
Sbjct: 102 TDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDD---VTARILV 158
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 159 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALY 218
Query: 344 NVTGRL 349
++ RL
Sbjct: 219 EISTRL 224
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 22/204 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
++ +E S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI V+++E
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNE 344
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SP +A++L+ + + +SEK + RLVV SN+VGC+LG+GG +
Sbjct: 345 IPTEPISPTIEALILLHDK-VSASSEKHHS---------STRLVVPSNKVGCILGEGGQV 394
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+EMR+ TG IR+ S K +S D +VQ++G + + A+ + RLR
Sbjct: 395 ITEMRRRTGAEIRVYSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLR-------- 446
Query: 359 NTARTRSTSSVLTETSPYSRLKDP 382
RT +S P++ DP
Sbjct: 447 --TRTLRDTSTANNPPPFAPSDDP 468
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 443 GWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV 502
G GL ++G L SG S +T+E+ +P + + S+ G G NL +RQISGA++
Sbjct: 660 GQIHGLEDYRG-LPSASGRFS-----STIELRIPNSSLESIVGVGGVNLAEIRQISGARL 713
Query: 503 IVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+HE GS++ +V I GT D+ +AAQSLL+ FI
Sbjct: 714 RLHEAHAGSSESVVEIQGTLDQAKAAQSLLEGFI 747
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQAA 528
++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 291 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPI 350
Query: 529 QSLLQAFIL 537
++A IL
Sbjct: 351 SPTIEALIL 359
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 170/354 (48%), Gaps = 29/354 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E A I V +R++ ++ E PE+ SP
Sbjct: 80 FRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIVLISGREEPEAPLSP 139
Query: 248 AQKAVVLVFSRLIEGTSE---KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A AV+ VF R + G SE G + + + RL+VAS Q L+GK G++I ++
Sbjct: 140 AMDAVIRVFKR-VTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAINLIGKQGSLIKSIQ 198
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ TG S+R++S D++ + ++R+V++ GE KV+ A+ V G LR ++
Sbjct: 199 ESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLRKFLVDHSVLPLFE 258
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
R+ ++ +++ D + S + D+S P + + +L ++ P
Sbjct: 259 RTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLPAKRESL-YLDRETQMEHSGLPMY 317
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++G+ SS +GR + + IVT + +P + +
Sbjct: 318 GQEHGLSGIR---SSGLGR------------------AGAPIVTQIAQTMQIPLSYAEDI 356
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFI 536
G G+N+ +R+ SGA + V E R G D I V I GT + Q AQ L+Q FI
Sbjct: 357 IGIGGANIAYIRRTSGAILTVQESR-GLPDEITVEIKGTSSQVQTAQQLIQEFI 409
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 24/186 (12%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQPEL 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D SS+ V AR++V
Sbjct: 102 TDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDD---VTARILV 158
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 159 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALY 218
Query: 344 NVTGRL 349
++ RL
Sbjct: 219 EISTRL 224
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 12/154 (7%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
++ +E S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI V+++E
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNE 344
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SP +A++L+ + + +SEK SS RLVV SN+VGC+LG+GG +
Sbjct: 345 IPTEPISPTIEALILLHDK-VSASSEK--HHSS-------TRLVVPSNKVGCILGEGGQV 394
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQIS 332
I+EMR+ TG IR+ S K +S D +VQ++
Sbjct: 395 ITEMRRRTGAEIRVYSKADKPKYLSFGDELVQVT 428
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQAA 528
++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 291 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPI 350
Query: 529 QSLLQAFIL 537
++A IL
Sbjct: 351 SPTIEALIL 359
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 114 bits (286), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 24/186 (12%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQPEL 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D SS+ V AR++V
Sbjct: 102 TDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDD---VTARILV 158
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 159 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALY 218
Query: 344 NVTGRL 349
++ RL
Sbjct: 219 EISTRL 224
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 12/162 (7%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
++ +E S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI V+++E
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNE 344
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SP +A++L+ + + +SEK SS RLVV SN+VGC+LG+GG +
Sbjct: 345 IPTEPISPTIEALILLHDK-VSASSEK--HHSST-------RLVVPSNKVGCILGEGGQV 394
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKD 340
I+EMR+ TG IR+ S K +S D +VQ +G+ ++D
Sbjct: 395 ITEMRRRTGAEIRVYSKADKPKYLSFGDELVQAAGQIHGLED 436
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 443 GWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV 502
G GL ++G L SG S +T+E+ +P + + S+ G G NL +RQISGA++
Sbjct: 429 GQIHGLEDYRG-LPSASGRFS-----STIELRIPNSSLESIVGVGGVNLAEIRQISGARL 482
Query: 503 IVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+HE GS++ +V I GT D+ +AAQSLL+ FI
Sbjct: 483 RLHEAHAGSSESVVEIQGTLDQAKAAQSLLEGFI 516
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQAA 528
++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 291 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPI 350
Query: 529 QSLLQAFIL 537
++A IL
Sbjct: 351 SPTIEALIL 359
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 39/186 (20%)
Query: 164 VRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA 223
+ L L D+V+ A +++ S R++ ++KVG ++G+GG +I ++ GA I V
Sbjct: 354 IEALILLHDKVS---ASSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV-- 408
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVF-SRLIEGTSE-------KGLDFSSNKG 275
YS A K L F L++ + +GL +S +
Sbjct: 409 ---------------------YSKADKPKYLSFGDELVQAAGQIHGLEDYRGLPSASGR- 446
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
L + ++ + ++G GG ++E+R+++G +R+ ++ VV+I G
Sbjct: 447 FSSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHA----GSSESVVEIQGTL 502
Query: 336 SKVKDA 341
+ K A
Sbjct: 503 DQAKAA 508
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 107/186 (57%), Gaps = 24/186 (12%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------T 236
E +RILC K+G+V+G+GG I++AL+ E A I V ++P DER+I +
Sbjct: 42 ETIYRILCPAKKIGSVLGRGGDIVKALREETKAKIRVADSIPGADERVIIIFNYQNQPEL 101
Query: 237 ASEGPESRYSP----------AQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVV 284
E E + S AQ A++ + +++ E E D SS+ V AR++V
Sbjct: 102 TDEAAEKQISDGLGNMKPHCFAQDALLKIHDKIVADEIYDEVAHDESSDD---VTARILV 158
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVY 343
NQVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y
Sbjct: 159 QGNQVGCLLGKGGSIIQQLRSDTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALY 218
Query: 344 NVTGRL 349
++ RL
Sbjct: 219 EISTRL 224
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 12/172 (6%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
++ +E S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI V+++E
Sbjct: 285 SETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNE 344
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SP +A++L+ + + +SEK SS RLVV SN+VGC+LG+GG +
Sbjct: 345 IPTEPISPTIEALILLHDK-VSASSEK--HHSST-------RLVVPSNKVGCILGEGGQV 394
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
I+EMR+ TG IR+ S K +S D +VQ++G + + A+ + RLR
Sbjct: 395 ITEMRRRTGAEIRVYSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLR 446
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQAA 528
++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 291 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTEPI 350
Query: 529 QSLLQAFIL 537
++A IL
Sbjct: 351 SPTIEALIL 359
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 103/384 (26%), Positives = 168/384 (43%), Gaps = 88/384 (22%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V +R+LC ++G VIGKGG++I+ ++ GA I V + C ERLI++++S+ P +
Sbjct: 31 VEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPEVAGCSERLISLSSSDEPGAEL 90
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
AQ+A+ V SRL E ++ + R++V QVGC+LGKGG +IS++R+
Sbjct: 91 CRAQEALFAVQSRLSEAD-------AAQEDTCCVVRMLVEQAQVGCVLGKGGEVISDLRR 143
Query: 306 VTGTSIRIISDQ--LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
TG +IR +SD+ L C D +V + GE V DA+ ++ LR H AR
Sbjct: 144 RTGANIR-VSDKRDLPACAGSEDSLVAVKGEAQAVSDALRQLSALLR-THSQRKPQQARA 201
Query: 364 R--------STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+T++V E + + R P V + +A H Q + L +H++
Sbjct: 202 PMTFNITAVATAAVQPEQAQHRR--QPMREPVLAPIARPH--------QCHNCLPDAHAM 251
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P++ Q +++ V + ++V
Sbjct: 252 Q----PRMTAVQ----------------------------------EASAVVEVQLRLLV 273
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS----------TDRIVVISG----- 520
P IG V G G + +R +GA + VHE G+ DR++ ++
Sbjct: 274 PATHIGCVIGRRGEMIRTIRDDTGAHIKVHEGSQGARAFPPSEKKGVDRVITVAAAEAAG 333
Query: 521 ---TPDETQAAQSLLQAFILTGPS 541
+P E L A L GPS
Sbjct: 334 AAVSPTEEAVC---LMALCLLGPS 354
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/385 (27%), Positives = 172/385 (44%), Gaps = 46/385 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-----GA-TMPECD----ERLIT 234
EV R+L +G VIG+ G +IR ++ + GA I V GA P + +R+IT
Sbjct: 266 EVQLRLLVPATHIGCVIGRRGEMIRTIRDDTGAHIKVHEGSQGARAFPPSEKKGVDRVIT 325
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV-----NARLVVASNQV 289
V A+E + SP ++AV L+ L+ GL +LV ++ QV
Sbjct: 326 VAAAEAAGAAVSPTEEAVCLMALCLL---GPSGLPPVPCIRILVPTPQGGTAEALSLLQV 382
Query: 290 GCLLGKGGTIISEMRKVTGTSIRII-----SDQLLK---CISENDRVVQISGEFSKVKDA 341
G +LGKGG I+++RK +G +R++ D+ L + +VVQI G + A
Sbjct: 383 GGVLGKGGATITQVRKDSGAGVRLVPLEAEDDRWLPRDVAAGQMHKVVQIEGPITATVKA 442
Query: 342 VYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP 401
V V +LR AR++ T Y P F + + +
Sbjct: 443 VRAVCAQLRAWQ-------ARSQGAQPARELTEAYGGAHAPQQFHPMHQAMLPRETAPGL 495
Query: 402 LTQGMDHLGLSH--SLDCP----SSPKLWTAQTVT-GVHLRGSSDVGRGWSQGLSHHKGG 454
+G+ L + D P P L + V RG D R SQ L
Sbjct: 496 RGRGLPDLSRAEMGMYDSPLRHCERPVLQLRHPLDLQVLSRGQMD--RAMSQPLMMQ--- 550
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
++ +A + E+ + +G V G+ G N+ ++R+ISGA+V + + G T+R
Sbjct: 551 -QVTQQVVTAPDQTQSCELRLVGVQVGCVLGKAGENITQIRKISGARVKLSDAPRGVTER 609
Query: 515 IVVISGTPDETQAAQSLLQAFILTG 539
++ +SGT ++ QAA +L+QAF+L G
Sbjct: 610 LLRLSGTCEQVQAAVNLVQAFLLAG 634
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
E G+ S G +V RL+ + ++G ++GKGG++I +MR TG I+ + ++ C
Sbjct: 18 EAGVVKRSAAGAMVEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIK-VEPEVAGC--- 73
Query: 325 NDRVVQIS------GEFSKVKDAVYNVTGRL 349
++R++ +S E + ++A++ V RL
Sbjct: 74 SERLISLSSSDEPGAELCRAQEALFAVQSRL 104
>gi|358343600|ref|XP_003635888.1| Poly(rC)-binding protein [Medicago truncatula]
gi|358344098|ref|XP_003636130.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355501823|gb|AES83026.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355502065|gb|AES83268.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 241
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/253 (35%), Positives = 132/253 (52%), Gaps = 45/253 (17%)
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
S+QVG ++GKGG IS +R +G++IR+ C ++++ ++ I+G + +++A+ +
Sbjct: 28 SSQVGAIVGKGGKNISNIRNNSGSNIRVCPAP--HCAAKDEELILITGGYRCIENALRKI 85
Query: 346 TGRLRDNHFSG-TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQ 404
T +R+N + L AR + + + KD + S F++ P
Sbjct: 86 TSIIRNNPLTNEVLAEARIKPS---------FPLNKDTVRSKFITRKKSSFPFARVP--- 133
Query: 405 GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK--GGLELGSGSK 462
P + ++ A+ VT G SH +E G G+
Sbjct: 134 -------------PQNAGVYQAKKVT--------------ENGESHTNLIENVEPGRGNI 166
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP-RLGSTDRIVVISGT 521
A VTNTTVEIIV E+V GSVYGE+G NL R+RQISGA V V +P G++ VVISGT
Sbjct: 167 VATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGT 226
Query: 522 PDETQAAQSLLQA 534
PD+T AAQSLLQA
Sbjct: 227 PDQTFAAQSLLQA 239
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 107/174 (61%), Gaps = 11/174 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS-------EG 240
+R LC++ K+G++IG+GG I + L+S+ A I +G ++P CDER+IT+ +S E
Sbjct: 42 YRYLCTSRKIGSIIGRGGEIAKQLRSDTQAKIRIGESVPACDERVITIFSSSRETNTIED 101
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL-LVNARLVVASNQVGCLLGKGGTI 299
E + PAQ A+ V +L T + ++ + + L V RL+V S+Q+GC++GKGG I
Sbjct: 102 TEDKVCPAQDALFRVHEKL--ATDDGPVNKENEESLGQVTVRLLVPSDQIGCIIGKGGHI 159
Query: 300 ISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I +R TG+ IR++S++ L C + D ++ I+G+ V+ A+ V+ RL N
Sbjct: 160 IQGIRSDTGSQIRVLSNEHLPLCATSGDELLLITGDPMVVRKALLQVSSRLHGN 213
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/172 (41%), Positives = 109/172 (63%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 278 KEFSLRLLCAAANVGGVIGKGGGIIKQIRQESGAFIKVDSSSAE-DDCIITVSAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V RL SEK +D S + RL+V+++++GCL+GKGG+II+E+
Sbjct: 337 PVSPTIDATV----RLQPRCSEK-IDAESGEPSYTT-RLLVSTSRIGCLIGKGGSIITEI 390
Query: 304 RKVTGTSIRIISDQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRIIS Q + K S+++ +V ISG+ + A+ +T RL+ N F
Sbjct: 391 RRTSRANIRIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLKANFF 442
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 172 DRVATLDARTQQQ------EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT- 224
+++AT D ++ +V+ R+L +D++G +IGKGG II+ ++S+ G+ I V +
Sbjct: 118 EKLATDDGPVNKENEESLGQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGSQIRVLSNE 177
Query: 225 -MPEC 228
+P C
Sbjct: 178 HLPLC 182
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 104/362 (28%), Positives = 176/362 (48%), Gaps = 32/362 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
+R++ KVG++IG+ G +I+ + E A I + P +R++ ++ E PE+ SP
Sbjct: 29 YRLIVPVAKVGSIIGRKGELIKKMCVETRARIRILDGPPSISDRIVLISGKEEPEAALSP 88
Query: 248 AQKAVVLVFSRL---------IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
A AV+ VF R+ G++ G FSS K L+VAS+Q L+GK G+
Sbjct: 89 AMDAVLRVFKRVSGLSAGEADAMGSAVAGAAFSSVK-------LLVASSQAINLIGKQGS 141
Query: 299 IISEMRKVTGTSIRIISDQLLKCISEND-RVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I +++ T ++R+++++ + +D R+V+I GE SKV A+ V G+LR T
Sbjct: 142 TIKSIQESTAATVRVLAEEEAPSYATSDERIVEIHGEASKVLKALEGVIGQLRKFLVDHT 201
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
+ ++ ++++++ D + S A+ H P + +G +SL
Sbjct: 202 VVPIFEKTHNAIISQDRSADARADKTQPSIPSLTAL-HSAPAPQV-----GIGSEYSLSL 255
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE-LGSGSKSA-IVTNTTVEIIV 475
P ++ ++ + S + G L GGL G G +A IVT T + V
Sbjct: 256 KRDPSIYDRESHLDQKIPQSGLLLFGQDSSL----GGLRPTGLGRAAAPIVTQMTQTMQV 311
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQA 534
P + + G GSN+ +R+ SGA + + E R + D I V I GT + Q AQ L+Q
Sbjct: 312 PLSYAEDIIGVGGSNIAYIRRTSGAILTIQESR--TPDEITVEIKGTASQVQMAQQLIQE 369
Query: 535 FI 536
FI
Sbjct: 370 FI 371
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 22/191 (11%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI------- 233
+Q E +RILC K+G+V+G+GG I++AL+ E A I V ++P +ER+I
Sbjct: 41 SQPIETVYRILCPGKKIGSVLGRGGHIVKALREETKAKIRVADSIPGAEERVIIIFDYQD 100
Query: 234 ----------TVTASEGPESR--YSPAQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVN 279
++ ++G E+ AQ A++ + ++ E + + S V
Sbjct: 101 QSEQTDEAAQNISNNDGSENMKLQCFAQDALLKIHDKISTHEDPHDGAIHEKSETAADVT 160
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ-LLKCISENDRVVQISGEFSKV 338
AR++V NQVGCLLGKGG+II ++R TG IRI+ Q L +C ++D +VQISG S V
Sbjct: 161 ARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRILPSQDLPQCALQSDELVQISGAPSLV 220
Query: 339 KDAVYNVTGRL 349
+ A+Y ++ RL
Sbjct: 221 RKALYEISTRL 231
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 103/171 (60%), Gaps = 12/171 (7%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASEG 240
+ +E S RILC+++ +G VIGK G +R ++ + GA I V + ERLI +++ E
Sbjct: 295 EAEEFSVRILCASELIGPVIGKSGANVRQVEQQTGARILVQELDKDASGERLIVLSSKEI 354
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
P SPA +A++L+ S+ + +SEK + L+ RLVV S++VGC+LG+GG +I
Sbjct: 355 PGDPVSPAIEALILLHSK-VSASSEK-------RHLIT--RLVVPSSKVGCILGEGGKVI 404
Query: 301 SEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+EMR+ G IR+ S K +S ++ +VQ++G +DA+ + RLR
Sbjct: 405 TEMRRRIGAEIRVYSKADKPKYLSFDEELVQVAGPPDIARDALTEIASRLR 455
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 51/71 (71%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
+++++E+++P + +GSV G G NL +RQISGA++ + E GS++ I+ I G PD+
Sbjct: 684 YSSSSLELMIPNSSLGSVLGAGGVNLAEIRQISGARMKLLEGHPGSSESIMEIQGMPDQV 743
Query: 526 QAAQSLLQAFI 536
+AAQSLLQ FI
Sbjct: 744 RAAQSLLQGFI 754
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE-------G 240
+R LC + K+G++IG+GG I + ++++ A I +G ++ CDER+IT+ +S
Sbjct: 42 YRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVD 101
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTI 299
E + PAQ A+ V +L + + S++GL V RL+V S+Q+GC++GKGG I
Sbjct: 102 AEDKVCPAQDALFRVHEKL--SIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHI 159
Query: 300 ISEMRKVTGTSIRIISDQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I +R TG IR++S++ L C D ++QISG+ + V+ A+ V+ RL DN
Sbjct: 160 IQGIRSDTGAHIRVLSNENLPACAISGDELLQISGDSTVVRKALLQVSSRLHDN 213
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 278 KEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKVDSSNTE-DDCIITVSAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V + R E T + S RL+V+++++GCL+GKGG+II+E+
Sbjct: 337 PVSPTINAAVHLQPRCSEKTDPESAIPS------YTTRLLVSTSRIGCLIGKGGSIITEI 390
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRI+S + + K +E++ +VQISG+ V+ A+ +T RL+ N F
Sbjct: 391 RRTSRANIRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF 442
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
LS++ D + ++ +V+ R+L +D++G +IGKGG II+ ++S+ GA I V
Sbjct: 120 LSIDDD-IGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNEN 178
Query: 225 MPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRL 259
+P C + L+ ++ + +KA++ V SRL
Sbjct: 179 LPACAISGDELLQISGDS------TVVRKALLQVSSRL 210
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 105/174 (60%), Gaps = 11/174 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE-------G 240
+R LC + K+G++IG+GG I + ++++ A I +G ++ CDER+IT+ +S
Sbjct: 42 YRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVD 101
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTI 299
E + PAQ A+ V +L + + S++GL V RL+V S+Q+GC++GKGG I
Sbjct: 102 AEDKVCPAQDALFRVHEKL--SIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHI 159
Query: 300 ISEMRKVTGTSIRIISDQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I +R TG IR++S++ L C D ++QISG+ + V+ A+ V+ RL DN
Sbjct: 160 IQGIRSDTGAHIRVLSNENLPACAISGDELLQISGDSTVVRKALLQVSSRLHDN 213
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 278 KEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKVDSSNTE-DDCIITVSAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V + R E T + S RL+V+++++GCL+GKGG+II+E+
Sbjct: 337 PVSPTINAAVHLQPRCSEKTDPESAIPS------YTTRLLVSTSRIGCLIGKGGSIITEI 390
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRI+S + + K +E++ +VQISG+ V+ A+ +T RL+ N F
Sbjct: 391 RRTSRANIRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF 442
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
LS++ D + ++ +V+ R+L +D++G +IGKGG II+ ++S+ GA I V
Sbjct: 120 LSIDDD-IGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNEN 178
Query: 225 MPEC---DERLITVTASEGPESRYSPAQKAVVLVFSRL 259
+P C + L+ ++ + +KA++ V SRL
Sbjct: 179 LPACAISGDELLQISGDS------TVVRKALLQVSSRL 210
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 102/171 (59%), Gaps = 11/171 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E+ R+LC D +G VIGKGG I++++ +GA + V T +CDE +IT+++ E +
Sbjct: 306 EELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRDCDECIITISSFESLDD 365
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
S A + V+L+ ++ + ++G V RL++ S +GC++GK G+II+E+
Sbjct: 366 LKSMAVETVLLLQEKI-----------NDDEGGTVIMRLLIPSKVIGCIIGKSGSIINEI 414
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
RK T IRI LKC S +D +V+++G+ V+DA+ + RLRD+
Sbjct: 415 RKSTRADIRISKGDKLKCASSSDELVEVTGKVGCVRDALVQIVLRLRDDAL 465
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 155/369 (42%), Gaps = 55/369 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R+ D + V +RILC ++ +G+VIGK G +I +++ E A I V P +R+
Sbjct: 23 RITEQDDWVSDELVVYRILCPDEVIGSVIGKSGKVINSIRQETRAKIKVVDPFPGAKDRV 82
Query: 233 IT----VTASEGPE--------SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
IT V E E AQ A++ V + + + G D +
Sbjct: 83 ITIFCFVKDKEDVEVDDEFNDRQTLCAAQDALLKVHAAIANALASAG-DLDRKQRDKEQC 141
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI----ISDQLLKCISENDRVVQISGEFS 336
++++ S+Q ++GK G+ I ++R T TSI+I +D + C + D I+GE
Sbjct: 142 QILIPSSQSANVIGKAGSTIKKLRSKTRTSIKISPKDATDPIHSCAMDFDNFAVIAGEPE 201
Query: 337 KVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSS---VAV 393
V+ A++ + SS++ + P + P V+ + + +
Sbjct: 202 GVRRALFAI---------------------SSIMYKFPPREEI--PLDTNVNEAPPNIII 238
Query: 394 SHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGW---SQGLSH 450
D P + G + L S P + AQ V +H S G W S L
Sbjct: 239 PSDV--PLYSAGGLYPSADPILPPRSIPPMLGAQHVQDLHDYPES--GNAWPLYSSSLPV 294
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
GG+ S+ + V ++ P + IG V G+ G + +RQ SGA+V V + +
Sbjct: 295 VPGGISGHPPSEELV-----VRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTKRD 349
Query: 511 STDRIVVIS 519
+ I+ IS
Sbjct: 350 CDECIITIS 358
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/484 (25%), Positives = 206/484 (42%), Gaps = 86/484 (17%)
Query: 72 HDTIARP-VEAVPQEILWRSLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAV 130
H T++ P P+ WRS+ ++P + RS E + T RL+G
Sbjct: 26 HRTVSGPGTGGCPR---WRSMTKHGSVHWQKPRRFLKEWTEERSPEVFAKSTCERLYGGQ 82
Query: 131 SQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRI 190
+Q I+ V T P+ L E++ TL + R+
Sbjct: 83 AQ-------TSIMGTLAKVKLTGPTGG---------LDEENELNVTL---------TIRL 117
Query: 191 LCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQK 250
L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP + K
Sbjct: 118 LMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAIF---K 169
Query: 251 AVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
A ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+ TG
Sbjct: 170 AFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQ 229
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVL 370
+++ D L + +R + I+G V + V + + + TL+ + ++
Sbjct: 230 VQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGRVMTIP 281
Query: 371 TETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
+ P S R D A + H++ HD PPL ++S+
Sbjct: 282 YQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPLD--------AYSIQ---- 324
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV----------TNTT 470
T++ + L + V R S H G G S S V T TT
Sbjct: 325 ----GQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT 380
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ
Sbjct: 381 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQY 440
Query: 531 LLQA 534
L+ A
Sbjct: 441 LINA 444
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 106/193 (54%), Gaps = 21/193 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV----- 235
+Q + +RILC + K+G VIGK G I+++L+ E A I+V T+P +ER+I +
Sbjct: 42 SQPADTVYRILCPSRKIGGVIGKAGNIVKSLREETQAKITVADTIPGSEERVIIIYSSPT 101
Query: 236 -----------TASEGPESRYSP---AQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNA 280
+A+E + P AQ A++ V R+IE G+ N+ + A
Sbjct: 102 KIAKTQNKDDDSAAETKKESMEPHCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITA 161
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVK 339
RL+V +N VGCLLGK G +I +R TG +IR++ +D+L C D +VQISG+ + K
Sbjct: 162 RLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAK 221
Query: 340 DAVYNVTGRLRDN 352
A+Y V+ L N
Sbjct: 222 RALYEVSTLLHQN 234
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 78/130 (60%), Gaps = 10/130 (7%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E S +ILCS K+G VIGKGG ++ LQ E GA I V + DER+I +A EG
Sbjct: 316 EFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASIHVEDAPTDSDERVIRASAFEG---L 372
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
++P + + + +L TSE S KG + RL+V S++VGC+LG+GG +I+EMR
Sbjct: 373 WNPRSQTIDAIL-QLQNKTSE-----FSEKGTIT-TRLLVPSSKVGCILGQGGHVINEMR 425
Query: 305 KVTGTSIRII 314
+ T IR++
Sbjct: 426 RRTQADIRVV 435
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 470 TVEIIVPENVIGSVYGENGS--NLLRLR-----QISGAKVIVHEPRLGSTDRIVVISGTP 522
T ++VP + +G + G+ G N +R R ++ GA+V + +P GS++ IV I G+
Sbjct: 400 TTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIVDIRGSS 459
Query: 523 DETQAAQSLLQAFILTGPS 541
+ +A Q+F+ +G S
Sbjct: 460 EHLISAHGTYQSFMTSGQS 478
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 172/358 (48%), Gaps = 35/358 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E A I V +R++ ++ E E+ SP
Sbjct: 63 FRLIVPVLKVGSIIGRKGDLIKKMCDETRARIRVLDAPIGTPDRVVLISGKEDVEAPLSP 122
Query: 248 AQKAVVLVFSR---LIEGTSEK----GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
A AV+ VF R L EG +++ G+ FSS RL+VAS Q L+GK G+II
Sbjct: 123 AMDAVIRVFKRVSGLPEGNAQELGAAGIAFSS-------IRLLVASTQAINLIGKQGSII 175
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
+++ TG S+R++S +++ ++ ++R+V + GE KV +A+ + G LR ++
Sbjct: 176 KSIQESTGASVRVLSENEVPFYVATDERIVDLQGEAMKVLEALEAIVGHLRKFLVDHSVL 235
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
++ +++++ D +SF S + D+ PL+ D L L S
Sbjct: 236 PLFEKNYNALISLDRQAETWSDRSSFHTTSQGRIDIDY---PLSGKRDALLLERETPFES 292
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
L + + L G + + S IVT T + VP +
Sbjct: 293 QVPL------SRISLYGQDPAISSVRSSVFNR---------SSVPIVTQVTQTMQVPISY 337
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFI 536
+ G G+N+ +R+ SGA + V+E R G D I+V I GT E Q AQ L+Q F+
Sbjct: 338 AEEIIGIRGNNIEYIRRTSGAIITVNESR-GLPDEIIVEIKGTASEVQMAQQLIQEFL 394
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 169/361 (46%), Gaps = 41/361 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+RK
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRK 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + ++ + I+G V + V + + L T
Sbjct: 126 STGAQVQVAGDMLP---NSTEQAITIAGMPQSVTECVKQICLVM--------LETISQSP 174
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP--SSPKL 423
V+T PY + PAS S V + + T G H +H L+ P + +
Sbjct: 175 QGRVMT--IPYQPM--PAS----SPVICAGGQDRYSNTAGYPHA--THDLEGPPLDAYSI 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV----------TNTTVEI 473
T++ +HL + V R S H G G S S V T TT E+
Sbjct: 225 QGQHTISPLHLANLNQVARQQSHFAMMHGGTGFAGIDSNSPEVKGYWASLDASTQTTHEL 284
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+
Sbjct: 285 TIPNNLIGCIIGRQGTNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLIN 344
Query: 534 A 534
A
Sbjct: 345 A 345
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 96/366 (26%), Positives = 168/366 (45%), Gaps = 39/366 (10%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG +IG+ G ++ + E + I + +P ER++ V+A E PE+ SP
Sbjct: 15 FRLVVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAAISP 74
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFS-SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A + ++ V R+IEG + +D + G V++RL+VA+ Q G L+G+ G I ++
Sbjct: 75 AMEGLLRVHRRVIEGAEPESVDAEIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSIQDT 134
Query: 307 TGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD----------NHFS 355
+G ++R++ +++L C +DRVV++ G+ V+ A+ V LR +
Sbjct: 135 SGANVRVLPAEELPLCALADDRVVEVQGDPRNVQRAMELVVSHLRKFLVDRSVLPLFELN 194
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
N +ST S + S + + P+ S+ D S TQ H
Sbjct: 195 VMANQNNQQSTGSQWQQPSSTQQQQPPSYSSNDSTYYGGADISHHSQTQQQSH------- 247
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
+ H G S GR + G S + + ++T T + +
Sbjct: 248 ------------DLANQHHHGVSMYGRDPTLGGS-------IAPPPPAPVITQVTQHMQI 288
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P + ++ G G+N+ +R+ SGA + + E R + V I G+ + Q AQ L+Q F
Sbjct: 289 PLSYADAIIGSAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQVQTAQQLIQNF 348
Query: 536 ILTGPS 541
+TG S
Sbjct: 349 -MTGAS 353
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 77/375 (20%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------- 235
E +RILC K+G+V+G+GG I++AL+ A I V ++P DER+I +
Sbjct: 45 ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQTEE 104
Query: 236 ----TASEGPESR--YSPAQKAVVLVFSRLIEGTS-EKGLDFSSNKGLL-VNARLVVASN 287
+++G E + AQ A++ + ++ G+ ++ + V AR++V N
Sbjct: 105 AAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGN 164
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
QVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y ++
Sbjct: 165 QVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEIS 224
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG- 405
RL + R + L E + +S H + P L
Sbjct: 225 TRLHQH----------PRKDNPPLEEI-------------IDASTQRKHQ-APPQLPHAN 260
Query: 406 --MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
+ HL + HS P P L + ++ L +H S
Sbjct: 261 PMLPHLHVDHS---PQIPLLDPYR-----------------NRPLQYH-----------S 289
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTP 522
A +++I+ IG V G++G N+ ++ Q +GA V V E + S +R++V+S
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 523 DETQAAQSLLQAFIL 537
++A IL
Sbjct: 350 IPDDPVSPTIEALIL 364
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 125/248 (50%), Gaps = 38/248 (15%)
Query: 131 SQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRI 190
+ +LP LHVD +P + RPL S + +E S +I
Sbjct: 259 ANPMLPHLHVD----------HSPQIPLLDPYRNRPLQYHS---------AEAEEFSIKI 299
Query: 191 LCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC-DERLITVTASEGPESRYSPAQ 249
LC+++ +G VIGK G +R ++ + GA + V +ERLI V++ E P+ SP
Sbjct: 300 LCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTI 359
Query: 250 KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
+A++L+ S++ + N L RLVV SN+VGC++G+GG +I+EMR+ TG
Sbjct: 360 EALILLHSKVST--------LAENHHL--TTRLVVPSNKVGCIIGEGGKVITEMRRRTGA 409
Query: 310 SIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSS 368
IR+ S K +S ++ +VQ++G + + A+ + RLR T R S+S+
Sbjct: 410 EIRVYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR-------TRTLRDGSSSN 462
Query: 369 VLTETSPY 376
T +P+
Sbjct: 463 NPTPFAPF 470
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 171/366 (46%), Gaps = 51/366 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E + I V +R++ V+ E PE+ SP
Sbjct: 55 FRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEDPEAALSP 114
Query: 248 AQKAVVLVFSRLIEGTSE---------KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
A AVV +F R + G SE GL FSS RL+VAS Q L+GK G+
Sbjct: 115 AMDAVVRIFKR-VSGFSETDAENQESAAGLAFSS-------IRLLVASTQAINLIGKQGS 166
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
+I +++ T S+R++S D++ + N+R+V+I GE KV A+ V G LR +
Sbjct: 167 LIKSIQENTSASVRVLSGDEVQFYATANERIVEIQGEALKVLKALEAVVGHLRKFLVDHS 226
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH---- 413
+ ++ ++ ++ D + S ++ F+ PL+ D +
Sbjct: 227 VLPLFEKTYNAPTSQDRQAETWSDKSLLHTSSRTSI---FADIPLSTKRDSVLADRESQL 283
Query: 414 SLDCPSSPKLWTAQ--TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
L PSS Q +++GVH SS +GR + IVT
Sbjct: 284 DLFLPSSTMSLYGQDSSLSGVH---SSALGR------------------VGAPIVTTVIQ 322
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQS 530
+ +P + + G G+N+ +R+ SGA + V E R+ D IVV I GT E Q AQ
Sbjct: 323 TMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV--PDEIVVEIKGTSSEVQTAQQ 380
Query: 531 LLQAFI 536
L+Q I
Sbjct: 381 LIQDVI 386
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 161/367 (43%), Gaps = 51/367 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L KVG +IG+ G I+ L E A I + P ER + V+A E P++ +P
Sbjct: 42 FRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAPIAP 101
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A ++ V +++ S D S G++V+ RL+V + Q G L+GK G I +++ +
Sbjct: 102 AIDGLLRVHKCIMDVES----DVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQEAS 157
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSGTLN 359
+R++ + L +ND VV+I GE + V AV + LR F +
Sbjct: 158 NCIVRVLGENLPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDRSVIKVFEMEMQ 217
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
T+ E P + DP S V + +P + ++ + LD
Sbjct: 218 KPNTQG-----NENMPPQQSWDP------SQVFPINTGGEPGFVPNLQYMQPPYQLDNYY 266
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG---GLELGSGSKS-------AIVTNT 469
P AQT H HH+G G E G+G S +IV
Sbjct: 267 PPP---AQTPLDQH---------------HHHQGPPYGRETGAGVSSPSLTPQQSIVNKI 308
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T + VP + +V G +G N+ +R+ SGA + + E + + V I+G+ + Q AQ
Sbjct: 309 TQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEMTVEINGSVSQVQTAQ 368
Query: 530 SLLQAFI 536
L+Q F+
Sbjct: 369 QLIQNFM 375
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 77/375 (20%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------- 235
E +RILC K+G+V+G+GG I++AL+ A I V ++P DER+I +
Sbjct: 52 ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQTEE 111
Query: 236 ----TASEGPESR--YSPAQKAVVLVFSRLIEGTS-EKGLDFSSNKGLL-VNARLVVASN 287
+++G E + AQ A++ + ++ G+ ++ + V AR++V N
Sbjct: 112 AAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGN 171
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
QVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y ++
Sbjct: 172 QVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEIS 231
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG- 405
RL + R + L E + +S H + P L
Sbjct: 232 TRLHQH----------PRKDNPPLEEI-------------IDASTQRKHQ-APPQLPHAN 267
Query: 406 --MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
+ HL + HS P P L + ++ L +H S
Sbjct: 268 PMLPHLHVDHS---PQIPLLDPYR-----------------NRPLQYH-----------S 296
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTP 522
A +++I+ IG V G++G N+ ++ Q +GA V V E + S +R++V+S
Sbjct: 297 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 356
Query: 523 DETQAAQSLLQAFIL 537
++A IL
Sbjct: 357 IPDDPVSPTIEALIL 371
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 38/245 (15%)
Query: 134 ILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCS 193
+LP LHVD +P + RPL S + +E S +ILC+
Sbjct: 269 MLPHLHVD----------HSPQIPLLDPYRNRPLQYHS---------AEAEEFSIKILCA 309
Query: 194 NDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC-DERLITVTASEGPESRYSPAQKAV 252
++ +G VIGK G +R ++ + GA + V +ERLI V++ E P+ SP +A+
Sbjct: 310 SEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEAL 369
Query: 253 VLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+L+ S++ + N L RLVV SN+VGC++G+GG +I+EMR+ TG IR
Sbjct: 370 ILLHSKVST--------LAENHHLTT--RLVVPSNKVGCIIGEGGKVITEMRRRTGAEIR 419
Query: 313 IISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLT 371
+ S K +S ++ +VQ++G + + A+ + RLR T R S+S+ T
Sbjct: 420 VYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR-------TRTLRDGSSSNNPT 472
Query: 372 ETSPY 376
+P+
Sbjct: 473 PFAPF 477
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
+VE +P + + SV G G NL +RQISGA+V +HE GS++ IV I G PD+ +AAQ
Sbjct: 684 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 743
Query: 530 SLLQAFI 536
SLLQ FI
Sbjct: 744 SLLQGFI 750
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 103/375 (27%), Positives = 172/375 (45%), Gaps = 77/375 (20%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--------- 235
E +RILC K+G+V+G+GG I++AL+ A I V ++P DER+I +
Sbjct: 45 ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIIIFNYSSQTEE 104
Query: 236 ----TASEGPESR--YSPAQKAVVLVFSRLIEGTS-EKGLDFSSNKGLL-VNARLVVASN 287
+++G E + AQ A++ + ++ G+ ++ + V AR++V N
Sbjct: 105 AAQNISTDGFEDMKPHCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGN 164
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
QVGCLLGKGG+II ++R TG IR++ S+ L +C ++D +VQISG S V+ A+Y ++
Sbjct: 165 QVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEIS 224
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG- 405
RL + R + L E + +S H + P L
Sbjct: 225 TRLHQH----------PRKDNPPLEEI-------------IDASTQRKHQ-APPQLPHAN 260
Query: 406 --MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
+ HL + HS P P L + ++ L +H S
Sbjct: 261 PMLPHLHVDHS---PQIPLLDPYR-----------------NRPLQYH-----------S 289
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTP 522
A +++I+ IG V G++G N+ ++ Q +GA V V E + S +R++V+S
Sbjct: 290 AEAEEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQE 349
Query: 523 DETQAAQSLLQAFIL 537
++A IL
Sbjct: 350 IPDDPVSPTIEALIL 364
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 38/245 (15%)
Query: 134 ILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCS 193
+LP LHVD +P + RPL S + +E S +ILC+
Sbjct: 262 MLPHLHVD----------HSPQIPLLDPYRNRPLQYHS---------AEAEEFSIKILCA 302
Query: 194 NDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC-DERLITVTASEGPESRYSPAQKAV 252
++ +G VIGK G +R ++ + GA + V +ERLI V++ E P+ SP +A+
Sbjct: 303 SEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEAL 362
Query: 253 VLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+L+ S++ + N L RLVV SN+VGC++G+GG +I+EMR+ TG IR
Sbjct: 363 ILLHSKVST--------LAENHHLTT--RLVVPSNKVGCIIGEGGKVITEMRRRTGAEIR 412
Query: 313 IISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLT 371
+ S K +S ++ +VQ++G + + A+ + RLR T R S+S+ T
Sbjct: 413 VYSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR-------TRTLRDGSSSNNPT 465
Query: 372 ETSPY 376
+P+
Sbjct: 466 PFAPF 470
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
+VE +P + + SV G G NL +RQISGA+V +HE GS++ IV I G PD+ +AAQ
Sbjct: 677 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 736
Query: 530 SLLQAFI 536
SLLQ FI
Sbjct: 737 SLLQGFI 743
>gi|224115590|ref|XP_002332094.1| predicted protein [Populus trichocarpa]
gi|222874914|gb|EEF12045.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 169/365 (46%), Gaps = 40/365 (10%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +++ + E A I + +R++ ++ E PE+ SP
Sbjct: 55 FRLIVPVSKVGSIIGRKGELVKKMCDETRARIRILEGPLGITDRIVLISGKEEPEAPLSP 114
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGL-------LVNARLVVASNQVGCLLGKGGTII 300
A AV+ VF R + G S D + + + RL+VAS+Q L+GK G+II
Sbjct: 115 AMDAVLRVFKR-VSGLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQGSII 173
Query: 301 SEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
+++ TG +R+++ D + + ++R+V+I GE KV A+ V G LR ++
Sbjct: 174 KSIQENTGVVVRVMAEDDIPTYATSDERIVEIHGEAMKVFKALEAVIGHLRKFLVDHSVI 233
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
++ ++ ++ P D A +HS+ P + G+ +SL
Sbjct: 234 PIFEKTYNATISLERPADACADNAQPSLHSA---------PAFSSGIIS---DYSLSLKR 281
Query: 420 SPKLWTAQT-------VTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
P ++ +T G L G + S GL + + IVT T
Sbjct: 282 DPSIYEHETHFEHKISQPGFSLYGDPGLVGLRSTGLGR----------ATAPIVTQVTQT 331
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSL 531
+ VP + + G GSN+ +R+ SGA + + E R G D I V I GT + Q AQ L
Sbjct: 332 MQVPLSYAEDIIGVAGSNIAYIRRTSGAILSIQESR-GLPDEITVEIKGTSSQVQMAQQL 390
Query: 532 LQAFI 536
+Q FI
Sbjct: 391 IQEFI 395
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 104/189 (55%), Gaps = 22/189 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ +R LC K+G++IG+GG I + L+SE + I +G TMP C+ER++T+ +S +
Sbjct: 41 EDTVYRYLCPVRKIGSIIGRGGDIAKQLRSETKSNIRIGETMPGCEERVVTIYSSSEETN 100
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
+ SPAQ A+ V R++ G E D + V R++V S+Q+GC++GKG
Sbjct: 101 PFGDTGELVSPAQDALFRVHDRIVAG--ELPADEEPEEAQQVTVRMLVPSDQIGCVIGKG 158
Query: 297 GTIISEMRKVTGTSIRIISDQ-LLKCISENDRVV------------QISGEFSKVKDAVY 343
G +I +R T IRI+ D+ L C +D ++ QI G+ S V+ A++
Sbjct: 159 GQVIQNIRSETRAQIRILKDEHLPPCALSSDELLQAFGNVFWALTSQIIGDASVVRKALH 218
Query: 344 NVTGRLRDN 352
+ RL +N
Sbjct: 219 QLASRLHEN 227
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 118/208 (56%), Gaps = 12/208 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II+ ++ E+GA I V ++ E D+ +I ++A E E
Sbjct: 293 KEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAKEFFED 352
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A + RL SEK SS+ +V RL+V S+++GCL+GKGG IISEM
Sbjct: 353 P-SPTIDAAL----RLQPRCSEKAERESSDS--VVTTRLLVPSSRIGCLIGKGGAIISEM 405
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
R VT +IRI+S + L K SE+D +VQI+GE + +A+ VT RL+ N F A
Sbjct: 406 RSVTRANIRILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLFEREGAIAA 465
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSS 390
T L P S + D + +G S
Sbjct: 466 IPPTLPYL----PMSDMSDGSKYGSRDS 489
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+ Q+V+ R+L +D++G VIGKGG +I+ ++SE A I + +P C
Sbjct: 136 EAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSETRAQIRILKDEHLPPC 184
>gi|224121400|ref|XP_002330818.1| predicted protein [Populus trichocarpa]
gi|222872620|gb|EEF09751.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 171/357 (47%), Gaps = 23/357 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +++ + E A I + +R++ ++ E PE+ SP
Sbjct: 13 FRLIVPLSKVGSIIGRRGELVKKMCDETRARIRILEGPLGISDRIVLISGKEEPEAPQSP 72
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFS-----SNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
A AV+ VF R + G S D + + + RL+VAS+Q L+GK G+II
Sbjct: 73 AMDAVMRVFKR-VSGLSPGEGDNTGSAAAAAGSAFCSIRLLVASSQAINLIGKQGSIIKS 131
Query: 303 MRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
+++ TG ++ +++ D+L + ++R+V+I GE KV A+ V G+LR ++
Sbjct: 132 IQENTGAAVHVMAEDELPSYATSDERIVEIHGEAMKVFKALEAVIGQLRKFLVDHSVIPI 191
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
++ ++ +++ P D A +HS+ P + G + +SL P
Sbjct: 192 FEKTYNATISQECPADARPDIAQPSLHSAYV-------PTIPSG---IASDYSLSFKRDP 241
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA-IVTNTTVEIIVPENVI 480
++ +T + G G+ G G G +A IVT T + VP +
Sbjct: 242 SIYEHETQFEHKISQPGLSIYGQDPGIV---GFRSTGLGRAAAPIVTQVTQTMQVPLSYA 298
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFI 536
+ G GSN+ +R+ S A + + E R G D I V I GT + Q AQ L+Q FI
Sbjct: 299 EDIIGVAGSNIAYIRRTSRAILSIQESR-GLPDEITVEIKGTGAQVQMAQQLIQEFI 354
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 104/355 (29%), Positives = 164/355 (46%), Gaps = 29/355 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVGA+IG+ G I+ + E A I V +R++ ++ E PE+ SP
Sbjct: 76 FRMIVPVSKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSP 135
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A AV+ VF R + G + D N G + RL+VAS Q L+GK G++I + +
Sbjct: 136 AMDAVLRVFRR-VSGLPDNDDDDVQNAGSAFCSVRLLVASTQAINLIGKQGSLIKSIVEN 194
Query: 307 TGTSIRIISDQLLKCISEND-RVVQISGEFSKVKDAVYNVTGRLRD---NHFSGTLNTAR 362
+G S+RI+S++ + D R+V + GE K+ A+ + G LR +H L +
Sbjct: 195 SGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRKFLVDHTVVPLFEKQ 254
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
+ S + P + K +S SS + DFS L D L L +
Sbjct: 255 YLARVSQTRQEEPLAESK--SSLHTISSNVIEPDFS---LLARRDPLFLDRDA------R 303
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ + TGV + V + H GL S SA VT + + +P +
Sbjct: 304 VESRVQPTGVSIYSQDPVLS------ARHSPGLARVS---SAFVTQVSQTMQIPFSYAED 354
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFI 536
+ G G+N+ +R+ SGA + + E D+I V I GT + Q A+ L+Q FI
Sbjct: 355 IIGVEGANIAYIRRRSGATITIKES--PHPDQITVEIKGTSSQVQTAEQLIQEFI 407
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 154/379 (40%), Gaps = 60/379 (15%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A E P+
Sbjct: 125 ENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRP 184
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V ++I +D + G V RL+VA Q G L+GK G+ I ++
Sbjct: 185 IPPAIDGLLRVHKQVIN-VDRDLVDSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQ 243
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLN 359
+G +IR++ + L + +D +V+I GE + V AV + LR D G
Sbjct: 244 DGSGCTIRVLGSENLPVFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFE 303
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGV---------------HSSVAVSHDFSQ----- 399
T R V P+ P H + SH +
Sbjct: 304 TQMQRPDVRVNQNVPPHQNWGPPPQGFPAPAGGGGGGPAFAPNHQYMPPSHHYDSYYPPT 363
Query: 400 --PPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL 457
PP+ + + H G P + G+H +
Sbjct: 364 ELPPMDKHL-HQG---------PPPAYAKDASMGIHSSSAP------------------- 394
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
+ ++VT T + +P +V G +G+N+ +R+ SGA + + E R + V
Sbjct: 395 ---PQQSVVTKVTQHMQIPLTYADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVE 451
Query: 518 ISGTPDETQAAQSLLQAFI 536
ISGT + QAAQ L+Q F+
Sbjct: 452 ISGTSSQIQAAQQLVQNFM 470
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 166/369 (44%), Gaps = 58/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKI--LEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + S+ LV RLVV + Q G L+GKGG I E+RK
Sbjct: 69 F---KAFAMIIYKLEEDINSS-MTKSTAASRLVTLRLVVPATQCGSLIGKGGCKIKEIRK 124
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V V + + + TL+ +
Sbjct: 125 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTKCVKQICLVMLE-----TLSHSPQGK 176
Query: 366 TSSVLTETSP----------YSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++L + P R D A + H++ HD PPL
Sbjct: 177 VKTILYQPMPSRSPVTCAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 218
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ ++L + V R S H G G S S V
Sbjct: 219 ---DAYSIQGQHTISPLNLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 275
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T T E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 276 STQITHELTIPNNLIGCIIGRQGTNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 335
Query: 526 QAAQSLLQA 534
AQ L++A
Sbjct: 336 SLAQYLIKA 344
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 166/369 (44%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 174 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 228
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 229 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 285
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 286 STGAQVQVAGDML---PNSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 337
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 338 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 379
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 380 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 436
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 437 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 496
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 497 SLAQYLINA 505
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 110/378 (29%), Positives = 171/378 (45%), Gaps = 47/378 (12%)
Query: 177 LDARTQQQEV----SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
+DAR + E+ + R+L +VG++IGK G + + E+GA I++ + C ER+
Sbjct: 1 MDARVTESELNATLTIRLLMHRKEVGSIIGKKGESPKRFRKESGARINI--SEGNCPERI 58
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
IT+T GP + KA V++ +L E + + ++ V RLVV + Q G L
Sbjct: 59 ITLT---GPTNAIF---KAFVMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPAYQCGSL 112
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+GKGG I E+R+ TG +++ D L + +R + I+G V + V + +
Sbjct: 113 IGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVM--- 166
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH-LGL 411
L T V+ T PY + PAS S V + + G H G
Sbjct: 167 -----LETLSQSPQGRVM--TIPYQPM--PAS----SPVICAGGQDRWGYAAGYPHAAGY 213
Query: 412 SHSLDCPSSPKL--WTAQ---TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
H P L ++ Q TV+ + L + V R S H G G S S V
Sbjct: 214 PHDTHYLEGPPLDAYSIQGQHTVSPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSNSPEV 273
Query: 467 ----------TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
T TT E +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V
Sbjct: 274 KGYWASLDASTQTTHEFTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQV 333
Query: 517 VISGTPDETQAAQSLLQA 534
I+G+ AQ L+ A
Sbjct: 334 TITGSAASISLAQYLINA 351
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 47/353 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR--- 244
+RILC ++ +G+VIGKGG +I++++ E + I V +P DER+I + +S P S+
Sbjct: 44 YRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSS--PLSKDKE 101
Query: 245 ------------YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
PAQ ++ V S +++ +S G D ++K +ARL+VA++Q+G L
Sbjct: 102 KDDDDDDNENEPVCPAQDGLLRVHSVIVQESS--GKDNDADKKRPQDARLLVANSQIGSL 159
Query: 293 LGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GKGG I ++R +G I+I D+L C D +V ISG+ + VK A+Y V+ L
Sbjct: 160 IGKGGNNIQKLRSESGAQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLFK 219
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP---LTQGMDH 408
+ + S +L ET+ SS+ S + PP L QG D
Sbjct: 220 HPPKEQI------PWSVILPETN-------------QSSLPPSGVPTFPPANYLPQG-DS 259
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L H+L S+P L A + G+ G S+ G W + G+ +
Sbjct: 260 LFGHHNL---SAPILGYASRLPGLGGYG-SEAGSAWPLSNPALPSFSKFGNSTTKKTSEE 315
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
++ ++ P + IG V G+ G+ + +R +GA + V + + S +R++V+S T
Sbjct: 316 FSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSAT 368
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 76/125 (60%), Gaps = 9/125 (7%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
+ +E S R+LC NDK+G VIGKGG I++++++ GA I V E DER+I V+A+E
Sbjct: 310 KKTSEEFSIRVLCPNDKIGGVIGKGGNTIKSMRNDTGASIRVEDAQTESDERVIVVSATE 369
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
+ R SP +AV+L+ + T + G ++ R +V S +GCLLGKGG I
Sbjct: 370 LADDRVSPTIEAVLLLQGKTSGTTDKDG---------AISTRFLVPSKHIGCLLGKGGNI 420
Query: 300 ISEMR 304
ISEMR
Sbjct: 421 ISEMR 425
Score = 38.9 bits (89), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
T I+ P NVIGSV G+ G + +RQ + +K+ V + G +R++VI +P
Sbjct: 42 TVYRILCPSNVIGSVIGKGGKVIKSMRQETRSKIRVADAVPGVDERVIVIFSSP 95
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 38/360 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLS 412
+SS + YS D ASF S+ ++ D PPL QG L
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKL 242
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
H L S T + SS +G+ GL A T+ E
Sbjct: 243 HQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHE 288
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 100/369 (27%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G GSN+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGCIIGRQGSNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 77
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 78 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 135 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 186
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 187 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 228
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 229 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 285
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 286 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 345
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 346 SLAQYLINA 354
>gi|326530414|dbj|BAJ97633.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 101/173 (58%), Gaps = 4/173 (2%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASEG 240
+ +E S RILC+++ +G VIG+ G +R ++ + GA I V + ERLI +++ E
Sbjct: 63 EPEEFSIRILCASELIGPVIGRSGANVRQVEQQTGARIVVQELHKDASGERLIVISSKEI 122
Query: 241 PESRYSPAQKAVVLVFSRL-IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SP +A++L+ S++ SE S + LV RLVV S +VGC+LG+GG +
Sbjct: 123 PADPVSPTIEALILLHSKVSASKVSEPSESEPSGEHKLVT-RLVVPSKKVGCILGEGGKV 181
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
I+EMR+ G IR+ S K +S N+ +VQ+SG ++A+ + RLRD
Sbjct: 182 ITEMRRRIGAEIRVYSKADKPKYLSFNEELVQVSGSPDIAREALTEIASRLRD 234
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
++GM LGLS + + T Q + GV G+S+ +++ G + +
Sbjct: 435 SRGMQQLGLSRAGNS-------TMQQL-GVTRAGNSNA-YDYTEAAGQMHGREDYQRAAD 485
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
++++VE+ +P + + SV G G NL +RQISGA++ + E R GS++ I+ I G
Sbjct: 486 VTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMA 545
Query: 523 DETQAAQSLLQAFI 536
+ + AQSLLQ FI
Sbjct: 546 HQVRVAQSLLQGFI 559
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 33/351 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+SS + YS D ASF S+ ++ D PPL + + P P
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL----EAYTIQGQYAIP-QP 237
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
L T +H + G + GL+ A T+ E+ +P ++IG
Sbjct: 238 DL------TKLHQLAMQQSHFPMTHGNTGFSAGLD-------ASAQTTSHELTIPNDLIG 284
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 285 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 44/356 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D + G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+VTG SI++ SD L + +R V ISG + +Y++ + ++ G R
Sbjct: 129 IREVTGASIQVASDMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKGATIPYR 185
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
P ++ P + + +++ P + M LG S+P
Sbjct: 186 ------------PKPQVGGPVILAGGQAYTIQGNYAVPAHSD-MGKLG--------SNPL 224
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL---GSGSKSAIVTNTTVEIIVPENV 479
A G ++ G G + G +L + + N T E+ VP +
Sbjct: 225 AGLAALGLGGLAT-PANTG-GLNPAALAALAGSQLRTSNTNRQQPAANNQTHEMTVPNEL 282
Query: 480 IGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLL 532
IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ L+
Sbjct: 283 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 44/356 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D + G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+VTG SI++ SD L + +R V ISG + +Y++ + ++ G R
Sbjct: 129 IREVTGASIQVASDMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKGATIPYR 185
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
P ++ P + + +++ P + M LG S+P
Sbjct: 186 ------------PKPQVGGPVILAGGQAYTIQGNYAVPAHSD-MGKLG--------SNPL 224
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL---GSGSKSAIVTNTTVEIIVPENV 479
A G ++ G G + G +L + + N T E+ VP +
Sbjct: 225 AGLAALGLGGLAT-PANTG-GLNPAALAALAGSQLRTSNTNRQQPAANNQTHEMTVPNEL 282
Query: 480 IGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLL 532
IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ L+
Sbjct: 283 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVSLAQYLI 338
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 77
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 78 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 135 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 186
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 187 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 228
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 229 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 285
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 286 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 345
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 346 SLAQYLINA 354
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 14/168 (8%)
Query: 172 DRVATLDARTQ--------QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA 223
DR DA+ Q Q E +R+L + KVG+VIGK GTI++A++ E GA I V
Sbjct: 81 DRDGPPDAKRQAIGAAEGPQTETVYRLLVQSKKVGSVIGKAGTIVKAIRDETGARIRVVE 140
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+P CDER+I ++A AQ+A+ V +R+ E E+G R++
Sbjct: 141 GVPNCDERVIVISARSDAARHTDAAQEALFKVHARVHE--HEEGPHPPPAN---ATTRML 195
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQ 330
V Q GCL+GK G II E+R+ +G I+I+ ++ L C NDRVVQ
Sbjct: 196 VCHTQAGCLIGKAGAIIKEIREASGAHIKILPAEDLPPCGLSNDRVVQ 243
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 38/360 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLS 412
+SS + YS D ASF S+ ++ D PPL QG L
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKL 242
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
H L S T + SS +G+ GL A T+ E
Sbjct: 243 HQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHE 288
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 348
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 37/360 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ T+ S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPKGVTIPYRPKPS 182
Query: 366 TSSVLTETSP--YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLSH 413
+S V+ YS D ASF S+ ++ D PPL QG L H
Sbjct: 183 SSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLH 242
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
L S T + SS +G+ GL A T+ E+
Sbjct: 243 QLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHEL 288
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 289 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 348
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 53/374 (14%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A E P+S
Sbjct: 151 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSA 210
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V R+++G SS G V+ RL+V ++Q G L+GK G + ++
Sbjct: 211 LPPAMDGLLRVHKRIVDGLDGDSSHASSGTGTKVSTRLLVPASQAGSLIGKQGGTVKSIQ 270
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLN 359
+ + +R++ + L + ++DRVV++ G+ + V AV + LR D
Sbjct: 271 EASSCVVRVLGAEDLPVFALQDDRVVEVLGDAAGVHKAVELIASHLRKFLVDRSIIPLFE 330
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQ-----------------PPL 402
+ P+ P ++ + Q PP
Sbjct: 331 MHMQMQNPPHMEHMPPHQSWGPPQGIPPNAGGGPGYGNPQYMPPPRQIENYYPPADLPPP 390
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
+ H G+S + + GVH GSS+ S +
Sbjct: 391 MEKQPHQGIS----------AYGREAPMGVH--GSSN-------------------SQAA 419
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
+++T T ++ +P + +V G G+++ +R+ SGA V + E R + V ISGT
Sbjct: 420 PSMITQITQQMQIPLSYADAVIGTAGTSISYIRRASGATVTIQETRGVPGEMTVEISGTA 479
Query: 523 DETQAAQSLLQAFI 536
+ Q AQ L+Q F+
Sbjct: 480 SQVQTAQQLIQNFM 493
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 33/351 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+SS + YS D ASF S+ ++ D PPL + + P P
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL----EAYTIQGQYAIP-QP 237
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
L T +H + G + GL+ A T+ E+ +P ++IG
Sbjct: 238 DL------TKLHQLAMQQSHFPMTHGNTGFSAGLD-------ASAQTTSHELTIPNDLIG 284
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 285 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 68 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 124
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 125 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 176
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 177 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 218
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 219 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 275
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 276 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 335
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 336 SLAQYLINA 344
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 44/356 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D S G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+VTG SI++ S+ L + +R V ISG + +Y++ + ++ G R
Sbjct: 129 IREVTGASIQVASEMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKGATIPYR 185
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
P ++ P + + +++ P + M LG S+P
Sbjct: 186 ------------PKPQVGGPLILAGGQAYTIQGNYAVPAHSD-MGKLG--------SNPL 224
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL---GSGSKSAIVTNTTVEIIVPENV 479
A G ++ G G + G +L + + N T E+ VP +
Sbjct: 225 AGLAALGLGGLAT-PANTG-GLNPAALAALAGSQLRTSNTNRQQPAANNQTHEMTVPNEL 282
Query: 480 IGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLL 532
IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ L+
Sbjct: 283 IGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWAGLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 97/360 (26%), Positives = 164/360 (45%), Gaps = 44/360 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R + +SS + YS D ASF S+ ++ D PPL
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE-------------- 228
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV---TNTTVEII 474
A T+ G + D+ + + + G+ SA + T TT E+
Sbjct: 229 --------AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSASLDASTQTTHELT 280
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 281 IPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 340
>gi|432112571|gb|ELK35287.1| Poly(rC)-binding protein 2 [Myotis davidii]
Length = 453
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 162/359 (45%), Gaps = 47/359 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+SS + YS D ASF S+ ++ D PPL
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL------------------- 223
Query: 422 KLWTAQTVTGVHLRGSSDVGR----GWSQG---LSHHKGGLELGSGSKSAIVTNTTVEII 474
A T+ G + D+ + Q ++H G G A T+ E+
Sbjct: 224 ---EAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAG---LDASAQTTSHELT 277
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P ++IG + G G+ + + Q+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 278 IPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCGDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 68 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 124
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 125 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 176
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 177 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 218
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 219 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 275
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R + I+G+
Sbjct: 276 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQITITGSAASI 335
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 336 SLAQYLINA 344
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGYIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 99/360 (27%), Positives = 163/360 (45%), Gaps = 38/360 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLS 412
+SS + YS D ASF S+ ++ D PPL QG L
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKL 242
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
H L S T + SS +G+ GL A T+ E
Sbjct: 243 HQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHE 288
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ +P ++IG + G G+ + +RQ+SGA++ P GSTDR V I+G+ AQ L+
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLAQYLI 348
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 83/372 (22%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E+ FR+LC K G+VIG+ G +I+ ++SE GA + V + +ER+I V++++ +
Sbjct: 342 EIMFRLLCPVSKTGSVIGRNGEVIQQIRSETGAKVKVCEQINNAEERIICVSSNDDGLAP 401
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AQ A+ V+ +++ SS + + RL+V ++Q+GCL+GKGG+II ++R
Sbjct: 402 MLAAQVALFRVYRCIVD---------SSGSDVPLPFRLLVQTSQIGCLIGKGGSIIRQIR 452
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDA--VYNVTGRLRDNHFSGTLNTA 361
TG ++R++ SD L C + +D +++I G++ A + V+GRLR N
Sbjct: 453 NETGATVRVLPSDALPACANADDELLEI-GQWPADACALGIRIVSGRLRGNM-------- 503
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL---------TQGMDHLGLS 412
R ++ + E++ YS AS +V + Q L T+ +D S
Sbjct: 504 RHKAAERLNVESNVYS-----ASMTPTMAVQDTPTLQQSELMMYGMTAYETEPVDTALAS 558
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
SL P ++ TV VH+ S S H G
Sbjct: 559 LSLSAPPV-EIPGVTTVNSVHMTIS-----------SQHIG------------------- 587
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVH--------EPRLGSTDRIVVISGTPDE 524
SV G G N+ RQ+SGA++ ++ R ++R++ ISGT ++
Sbjct: 588 ---------SVLGRGGCNISIARQVSGARIKLYPGASGRNGARRAQDSERLLEISGTSEQ 638
Query: 525 TQAAQSLLQAFI 536
+AQ++++ FI
Sbjct: 639 VSSAQTIIERFI 650
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 32/179 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE------ 239
V FR+LC ++G VIGK G +I+AL++E GA + V T DER++ V + E
Sbjct: 70 VQFRLLCPVARIGRVIGKEGRVIKALRAETGARVKVAPTTRGADERVVLVASGEELMMDD 129
Query: 240 --GPESRYSPAQKAVVLVFSRL-------IEGT---------------SEKGLDFSSNKG 275
G + + A++A+ +F + ++GT S G + S N G
Sbjct: 130 GDGSDVPVTTAERALFRIFDTVASESGGALDGTRDGTSSESGSGVPESSSTGGERSMNGG 189
Query: 276 LLVN-ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQIS 332
V RL+V QVG L+GKGG +IS +R +G ++R++ +L C S D ++QI+
Sbjct: 190 RAVPICRLLVPRAQVGSLIGKGGAVISAIRASSGATVRLMPATMLPTCASRGDELLQIT 248
>gi|224123476|ref|XP_002319087.1| predicted protein [Populus trichocarpa]
gi|222857463|gb|EEE95010.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 163/355 (45%), Gaps = 25/355 (7%)
Query: 190 ILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQ 249
+L KVG++IG+ G I+ + E A I + P ER + V+A E P+S PA
Sbjct: 1 MLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSSLPPAM 60
Query: 250 KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
++ V R+I+G + G V+ RL+V ++Q G L+GK G + +++ +
Sbjct: 61 DGLLRVHKRIIDGLDSDSSNTPPTSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQEASTC 120
Query: 310 SIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT---LNTARTRS 365
+R++ + L + ++DRVV++ GE + V AV + LR + L + +
Sbjct: 121 IVRVLGAEDLPVFALQDDRVVEVLGEAAGVHKAVELIASHLRKFLVDRSIIPLFEMQMQM 180
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD--CPSS--P 421
++ + + P+ S+G + +H P Q ++ LD P + P
Sbjct: 181 SNPSMEQMPPHQ------SWGPPQPLPPNHG-GGPGYGQNPQYMPPPRQLDNYYPPADMP 233
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
L Q G+ S GR G SH + + +++T T ++ +P +
Sbjct: 234 PLMEKQPHQGI-----SAYGREAPMG-SHASSNAQ----AAPSMITQITQQMQIPLSYAD 283
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+V G G+++ +R+ SGA V + E R V ISGT + Q AQ L+Q F+
Sbjct: 284 AVIGTAGASISYIRRASGATVTIQETRGVPGAMTVEISGTASQVQTAQQLIQNFM 338
>gi|354490195|ref|XP_003507245.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cricetulus
griseus]
Length = 349
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 33/351 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+SS + YS D ASF S+ ++ D PPL + + P P
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL----EAYTIQGQYAIP-QP 237
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
L T +H + G + GL+ A T+ E+ +P ++IG
Sbjct: 238 DL------TKLHQLAMQQSHFPMTHGNTGFSAGLD-------ASAQTTSHELTIPNDLIG 284
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ P GSTDR V I+G+ AQ L+
Sbjct: 285 CIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLAQYLI 335
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/354 (27%), Positives = 166/354 (46%), Gaps = 23/354 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVGA+IG+ G I+ + E A I V +R++ ++ E PE+ SP
Sbjct: 76 FRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSP 135
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A AV+ VF R + G + D N G + + RL+VAS Q L+GK G++I + +
Sbjct: 136 AMDAVLRVFRR-VSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVEN 194
Query: 307 TGTSIRIISDQLLKCISEND-RVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
+G S+RI+S++ + D R+V + GE K+ A+ + G LR T+ +
Sbjct: 195 SGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRRFLVDHTVVPLFEKQ 254
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
+ +++T R ++P + S +S + +P + L L ++ +
Sbjct: 255 YLARVSQT----RQEEPLAESKSSLHTISSNLMEPDFS----LLARREPLFLERDSRVDS 306
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
+GV + V + H GL S SA VT + + +P + + G
Sbjct: 307 RVQPSGVSIYSQDPVLS------ARHSPGLARVS---SAFVTQVSQTMQIPFSYAEDIIG 357
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFILT 538
G+N+ +R+ SGA + + E D+I V I GT + Q A+ L+Q FI+
Sbjct: 358 VEGANIAYIRRRSGATITIKES--PHPDQITVEIKGTTSQVQTAEQLIQEFIIN 409
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 99/364 (27%), Positives = 165/364 (45%), Gaps = 47/364 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV-----SHDFSQPPLTQGMDHLGLSHSLDCPSS 420
++ + P S A S AV +HD PPL +
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAVGYPHATHDLEGPPL----------------DA 221
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV----------TNTT 470
+ T++ + L + V R S H G G S S V T TT
Sbjct: 222 YSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT 281
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ
Sbjct: 282 HELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQY 341
Query: 531 LLQA 534
L+ A
Sbjct: 342 LINA 345
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 148/357 (41%), Gaps = 15/357 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A E P+
Sbjct: 124 ENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDCP 183
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V ++I D + G V RL+VA Q G L+GK G+ I ++
Sbjct: 184 IPPAVDGLLRVHKQVIN-VDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQ 242
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLN 359
+G +IR++ + L + +D +V+I GE + V AV + LR D G
Sbjct: 243 DGSGCTIRVLGSENLPIFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFE 302
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
T S V P+ P + ++ SH D
Sbjct: 303 TQMQMSDVRVNQNLPPHQNWGPPPQGFPAPAGGGGGGGPA--FAPNHQYMPPSHHYDSYY 360
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
P T HL + H + + ++VT T + +P
Sbjct: 361 PP---TELPPMDKHLHQGPPPAYARDASMGIHSSSAQ----PQQSVVTKVTQHMQIPLTY 413
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+V G +G+N+ +R+ SGA + + E R + V ISGT + QAAQ L+Q F+
Sbjct: 414 ADAVIGASGTNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFM 470
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 95/354 (26%), Positives = 164/354 (46%), Gaps = 40/354 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D + G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+VTG SI++ SD L + +R V ISG + +Y++ + ++ G R
Sbjct: 129 IREVTGASIQVASDMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKGATIPYR 185
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
P ++ P + + +++ P + M LG S+P
Sbjct: 186 ------------PKPQVGGPVILAGGQAYTIQGNYAVPAHSD-MGKLG--------SNPL 224
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT-TVEIIVPENVIG 481
A G ++ G + + L + ++ N T E+ VP +IG
Sbjct: 225 AGLAALGLGGLATPANTGGLNPAALAALAGSQLRTSNTNRQQPAGNNQTHEMTVPNELIG 284
Query: 482 SVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ L+
Sbjct: 285 CIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
>gi|356562072|ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 167/364 (45%), Gaps = 47/364 (12%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ E A I V +R++ ++ E PE+ SP
Sbjct: 48 FRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEEPEAPLSP 107
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A AV+ VF R + G SE + ++ + RL+VAS Q L+GK G++I +++ T
Sbjct: 108 AMNAVIRVFKR-VSGFSEIDAENKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENT 166
Query: 308 GTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR----DNH----FSGTL 358
G S+R++S D++ + ++R+V++ GE KV A+ V G LR DN F T
Sbjct: 167 GASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDNSVLPLFEKTY 226
Query: 359 NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH----- 413
N +++ E + D S S ++ D PL+ D L
Sbjct: 227 N-------ATISQEHQADTTWVDKPSLHSASQPSIVTDL---PLSTKRDSLFADRESQLD 276
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
SL PS+ ++ Q + LR S+ L S IVT +
Sbjct: 277 SLLPPSTMSIY-GQDSSLSGLRSSA------------------LSRPSAPPIVTTVIQTM 317
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLL 532
+P + + G G+N+ +R SGA + V E + D I+V I GT + Q AQ L+
Sbjct: 318 QIPLSYAEDIIGIQGTNIEYIRCTSGAILTVQESPV--PDEIIVEIKGTSSQVQTAQQLI 375
Query: 533 QAFI 536
Q I
Sbjct: 376 QEVI 379
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 103/172 (59%), Gaps = 12/172 (6%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
T+ +E S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI ++++E
Sbjct: 28 TETEEFSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIISSNE 87
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P SPA +A++L+ + + SEK + RLVV S++VGC++G+GG +
Sbjct: 88 IPAEPISPAIEALILLHDK-VSAPSEKHHS---------STRLVVPSSKVGCIIGEGGKV 137
Query: 300 ISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
I++MR+ TG IR+ S K +S +D +VQ++G + + A+ + RLR
Sbjct: 138 ITDMRRRTGAEIRVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 189
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 421 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 480
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 481 QSLLQGFI 488
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQAA 528
++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R+++IS +
Sbjct: 34 SIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIISSNEIPAEPI 93
Query: 529 QSLLQAFIL 537
++A IL
Sbjct: 94 SPAIEALIL 102
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 166/373 (44%), Gaps = 74/373 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ C ER++TVT S
Sbjct: 74 LTVRLIMQGKEVGSIIGKKGDNIKKFREESGAKINISDG--SCPERIVTVTGS------- 124
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL---------------DFSSNKGLL----VNARLVVAS 286
+A++ FS LI E+ L + SN L V RL+V +
Sbjct: 125 ---TEAILKAFS-LIARKFEEMLSLLCLPVQTVGPTLQELQSNGSHLPKPPVTLRLIVPA 180
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
+Q G L+GKGG+ I E+R+VTG SI++ S+ L + +R V +SG + +Y +
Sbjct: 181 SQCGSLIGKGGSKIKEIREVTGASIQVASEML---PNSTERAVTVSGTAEAITKCIYQIC 237
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
+ ++ G R + P ++ V A+ H P LT+ +
Sbjct: 238 CVMMESPPKGATIPYRPK-------PAMPPVIFAGGQAYTVQGQYAIPH----PDLTK-L 285
Query: 407 DHLGLSHSLDCPS------SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG 460
L L H+ P +P+ A T +LR ++
Sbjct: 286 HQLALQHAPLLPGHSVGAINPQALAALATTN-NLRPNTAA-------------------- 324
Query: 461 SKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
+ A + TT E+ +P ++IG + G+ GS + +RQ+SGA + + GS DR V ISG
Sbjct: 325 AAIATASTTTTEMTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISG 384
Query: 521 TPDETQAAQSLLQ 533
TP+ AQ L+
Sbjct: 385 TPEAINLAQYLIN 397
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ + ++ +GC++GKGG+ I+E+R+++G +I+I + + DR V ISG + A
Sbjct: 337 MTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEE----GSKDRTVTISGTPEAINLA 392
Query: 342 VYNVTGRLRDNHFSGTLNTARTRSTS 367
Y + + + H + TL+ + T S
Sbjct: 393 QYLINTSM-ELHKNLTLDLSATHPAS 417
>gi|388502730|gb|AFK39431.1| unknown [Lotus japonicus]
Length = 123
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/84 (63%), Positives = 65/84 (77%)
Query: 456 ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRI 515
E G G+ A VTNTTVEI+V E+V SVYGE+G N+ R+RQISGA V V++P G++
Sbjct: 37 ERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGK 96
Query: 516 VVISGTPDETQAAQSLLQAFILTG 539
VVISGTPD+T AAQSLLQAFI +G
Sbjct: 97 VVISGTPDQTFAAQSLLQAFIQSG 120
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 163/349 (46%), Gaps = 31/349 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS + R ++ H+ S+ ++ D PP Q + +++ P KL
Sbjct: 183 SSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPP--QEAYTIQGQYAIPQPDLTKL 240
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H S G + GL+ A T+ E+ +P ++IG +
Sbjct: 241 ---------HQLAMQQSHFPMSHGNTGFSAGLD-------ASAQTTSHELTIPNDLIGCI 284
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 285 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 333
>gi|148907101|gb|ABR16694.1| unknown [Picea sitchensis]
Length = 490
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 42/366 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L + KVG +IG+ G ++ + E + I + + ER++ V+A E P++
Sbjct: 49 ENVFRMLVPSQKVGGIIGRKGEFVKKMCEETRSRIKILDGLSGTPERVVMVSAKEEPDAT 108
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA ++ V R+IEG E G + G + RL++A Q G L+GK G I ++
Sbjct: 109 ISPAMDGILKVHKRIIEGIDEVGRTQQAAGGPTI-TRLLLAGIQSGSLIGKQGATIKSIQ 167
Query: 305 KVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLN 359
+ +G + +++ S+ + C +D+V++I GE + V A+ V LR D
Sbjct: 168 ENSGVAAKVVGSEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRKFLVDRSVLPMYE 227
Query: 360 TARTRSTSSVLTET---SPYSR-----LKDPAS-FGVHSSVAVSHDFSQPPLTQGMDHLG 410
+++ S + + P+S L + S FG +S + + PP H
Sbjct: 228 MNMSKTNQSQMEQNLSHQPWSHNQTSSLPNSGSGFGNNS----KYTPTAPP------HDN 277
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
D P + G+++ G + GG + + + + ++T +
Sbjct: 278 YYAPSDLPPE-----THSHHGLNMYGRDPL------------GGHSVPNAAPAPVITQVS 320
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
+ +P + +V G NG+N+ R+ SGA + + E R + V I GT + Q AQ
Sbjct: 321 QRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIHGTASQVQTAQQ 380
Query: 531 LLQAFI 536
L+Q F+
Sbjct: 381 LIQNFM 386
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 43/362 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 80
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 81 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 137
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 138 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 194
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQG-----MDHLGLS 412
+SS + YS D ASF S+ ++ D PPL QG L
Sbjct: 195 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKL 254
Query: 413 HSLDCPSS--PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
H L S P +G+ S +V W GL+ A T+
Sbjct: 255 HQLAMQQSHFPMTHGNTGFSGIE-SSSPEVKGYW---------GLD-------ASAQTTS 297
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ
Sbjct: 298 HELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQY 357
Query: 531 LL 532
L+
Sbjct: 358 LI 359
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 288 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTD 340
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 341 RQVTITGSAASISLAQYLINVRL 363
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 164/367 (44%), Gaps = 48/367 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TV+ S
Sbjct: 22 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDC--SCPERIVTVSGSR------ 73
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S KA L+ + E S+ + ++ + RL+V ++Q G L+GKGG+ I E+R+
Sbjct: 74 SAIYKAFTLITKKFEEWCSQFQDNANTQGKPQIPIRLIVPASQCGSLIGKGGSKIKEIRE 133
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN------------- 352
+TG SI++ S+ L + +R V +SG + +Y++ + ++
Sbjct: 134 ITGCSIQVASEMLP---NSTERAVTLSGSAEAITQCIYHICCVMLESPPKGATIPYRPKP 190
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS 412
+G + A ++ + P + A + A+ + P T G++ G
Sbjct: 191 QVNGPVIVANGQAYTIQGNYAVPAQEVSGIAKNPLAGLAALGLAGAIPSNTGGLNPTGKY 250
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
S + + G LR +++ Q SH E
Sbjct: 251 SSPNALEYIPHAALAALAGSQLRTNNNRNVAPVQSQSH---------------------E 289
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQ 529
+ VP ++IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ
Sbjct: 290 MTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEERDSGNTDRTITITGNPDSVALAQ 349
Query: 530 SLLQAFI 536
L+ I
Sbjct: 350 YLINMRI 356
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 268 LDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDR 327
++ S + + + RL++ +VG ++GK G I+ R+ +G I ISD S +R
Sbjct: 12 INLSDDPAVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKIN-ISD-----CSCPER 65
Query: 328 VVQISGEFSKVKDAVYNVTGRLRD--NHFSGTLNT 360
+V +SG S + A +T + + + F NT
Sbjct: 66 IVTVSGSRSAIYKAFTLITKKFEEWCSQFQDNANT 100
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 59/370 (15%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E + I V +R++ V+ E PE+ SP
Sbjct: 54 FRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPLGTPDRIVLVSGKEEPEAALSP 113
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFS-SNKGL-LVNARLVVASNQVGCLLGKGGTIISEMRK 305
A AVV +F R + G SE + S GL + RL+VAS Q L+GK G++I +++
Sbjct: 114 AMDAVVRIFKR-VSGLSETDAENKESAAGLAFCSIRLLVASTQAINLIGKQGSLIKSIQE 172
Query: 306 VTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD---NH-----FSG 356
T S+R++S D++ + ++R+V+I GE KV A+ V G LR +H F
Sbjct: 173 NTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEK 232
Query: 357 TLNT-------ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHL 409
T N A T S S+L TS S D SV + SQ +D
Sbjct: 233 TYNASTSQDRQAETWSDKSLLHTTSRTSIFADIPYSTKRDSVLADRE-SQ------LDSF 285
Query: 410 GLSHSLDCPSSPKLWTAQ--TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
PSS Q +++GV SS +GR +G + IVT
Sbjct: 286 -------LPSSTMSLYGQDSSLSGVR---SSALGR--------------VG----APIVT 317
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQ 526
+ +P + + G G+N+ +R+ SGA + V E R+ D IVV I GT E Q
Sbjct: 318 TVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV--PDEIVVEIKGTSSEVQ 375
Query: 527 AAQSLLQAFI 536
AQ L+Q I
Sbjct: 376 TAQQLIQDVI 385
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 61/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPIAP-- 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ Q TG+ +Q SH E+ +P ++IG +
Sbjct: 226 -SNQGFTGID---------ASAQTSSH---------------------EMTIPNDLIGCI 254
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+P A+ L+ A
Sbjct: 255 IGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASISLAEYLINA 305
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 54/218 (24%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS- 238
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P ER IT+ +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 239 ---------------EGPES------RYSPAQKAVVLVFSRLIEGTSEKGL---DFS--- 271
E P R P+ V+ + + + D +
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 272 -------------SNKGLL-VNA-------RLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
SN+G ++A + + ++ +GC++G+ G I+E+R+++G
Sbjct: 213 QLAMQQSPFPIAPSNQGFTGIDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQ 272
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
I+I + DR V I+G + + A Y + R
Sbjct: 273 IKIANP----VDGSTDRQVTITGSPASISLAEYLINAR 306
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 61/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPIAP-- 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ Q TG+ +Q SH E+ +P ++IG +
Sbjct: 226 -SNQGFTGID---------ASAQTSSH---------------------EMTIPNDLIGCI 254
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+P A+ L+ A
Sbjct: 255 IGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASISLAEYLINA 305
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 54/219 (24%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS- 238
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P ER IT+ +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 239 ---------------EGPES------RYSPAQKAVVLVFSRLIEGTSEKGL---DFS--- 271
E P R P+ V+ + + + D +
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 272 -------------SNKGLL-VNA-------RLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
SN+G ++A + + ++ +GC++G+ G I+E+R+++G
Sbjct: 213 QLAMQQSPFPIAPSNQGFTGIDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQ 272
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
I+I + DR V I+G + + A Y + RL
Sbjct: 273 IKIAN----PVDGSTDRQVTITGSPASISLAEYLINARL 307
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 183 ASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 225
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L GL+ A +T E+ +P ++I
Sbjct: 226 GQTTPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIPNDLI 273
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 274 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 162/359 (45%), Gaps = 38/359 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--NHFSGTLNTART 363
TG +++ D L + +R + I+G + + V + + + L
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLEVSPQAPPKLQCIPW 182
Query: 364 RSTSSVLTETSPYSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLSH 413
R SS+ + YS D ASF S+ ++ D PPL QG L H
Sbjct: 183 RLKSSIYPQDR-YSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLH 241
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
L S T + SS +G+ GL A T+ E+
Sbjct: 242 QLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHEL 287
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 288 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 346
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 156/373 (41%), Gaps = 57/373 (15%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L VG +IG+ G ++ + E + I + + ER + V+A E PE+ SP
Sbjct: 87 FRLLVPTQMVGGIIGRKGEFVKKMCEETRSRIKILEGLRGTPERTVMVSAKEEPEAPVSP 146
Query: 248 AQKAVVLVFSRLIEGT----SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
A ++ V R+IEG E G G ++ RL+VA Q G L+G+ G I +
Sbjct: 147 AMDGILRVHKRIIEGGPDGRGELGRAQQGGSGT-ISTRLLVAGTQAGSLIGRQGATIKAI 205
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTL 358
++ +G +R+++ + L C +DR+V++ GE V AV + LR D
Sbjct: 206 QEGSGAIVRVLAAEDLPFCALADDRLVEVQGEAGSVHKAVELIVSHLRKFLVDRSVLPLF 265
Query: 359 NTARTRSTSSVLTETSPYSRLKD------PASFGV------HSSVAVSHDFSQPPLT--- 403
RT + E P+ P+S G + S A HD PP
Sbjct: 266 EADRTIGNQPQIEENLPHQSWGHNQSSSVPSSGGAGLGNTQYMSSAFQHDNYYPPSDLPL 325
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
+ H GLS V+ R S G + + +
Sbjct: 326 ESQGHHGLS-------------------VYGRDPSLAGH-------------SVANPPPA 353
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
++T T + +P + ++ G G+N+ +R+ SGA + V E R + V I GT
Sbjct: 354 PVITQVTQHMQIPLSYADAIIGTAGANISYMRRNSGATIAVQETRGVPGEMTVEIRGTAT 413
Query: 524 ETQAAQSLLQAFI 536
+ Q AQ L+Q F+
Sbjct: 414 QVQTAQQLIQNFM 426
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPEC---DERLITVTASEG 240
+S R+L + + G++IG+ G I+A+Q +GA + V A +P C D+RL+ V G
Sbjct: 180 ISTRLLVAGTQAGSLIGRQGATIKAIQEGSGAIVRVLAAEDLPFCALADDRLVEVQGEAG 239
Query: 241 PESRYSPAQKAVVLVFSRL 259
KAV L+ S L
Sbjct: 240 ------SVHKAVELIVSHL 252
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 98/357 (27%), Positives = 163/357 (45%), Gaps = 49/357 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT S
Sbjct: 17 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTGST------ 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ LI E+ D +S + + RL+V ++Q G L+GKGG+ I
Sbjct: 69 ----NAIFKAFT-LICKKFEEFQDINSGGSGVPRPPITLRLIVPASQCGSLIGKGGSKIK 123
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+VTG SI++ S+ L + +R V ISG + +Y++ + ++ G
Sbjct: 124 EIREVTGASIQVASEMLP---NSTERAVTISGTGEAITQCIYHICTVMLESPPKGATIPY 180
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R P ++ P + + +++ P T M LG S +
Sbjct: 181 R------------PKPQVGGPVILAGGQAYTIQGNYAVPAHTD-MSALGKSPLAGLAALG 227
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL-GSGSKSAIVTN-TTVEIIVPENV 479
A T TG G + G +L S S++ +N T E+ VP +
Sbjct: 228 LGGLAPTNTG-----------GLNPAALAALAGSQLRTSNSRNQQNSNQQTHEMTVPNEL 276
Query: 480 IGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
IG + G+ G+ + +RQISGA + + + G TDR + ISG PD AQ L+
Sbjct: 277 IGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVALAQYLIN 333
>gi|356549146|ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 105/364 (28%), Positives = 167/364 (45%), Gaps = 47/364 (12%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ E A I V +R++ ++ E E+ SP
Sbjct: 48 FRLIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTSDRIVLISGKEDLEAPLSP 107
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A AV+ VF R + G SE ++ + RL+VAS Q L+GK G++I +++ T
Sbjct: 108 AMDAVIRVFKR-VSGFSEIDAKNKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQENT 166
Query: 308 GTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR----DNH----FSGTL 358
G S+R++S D++ + ++R+V++ GE KV A+ V G LR DN F T
Sbjct: 167 GASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDNSVLPLFEKTY 226
Query: 359 NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH----- 413
N +++ E + D S S ++ D PL+ D L
Sbjct: 227 N-------ATISQERQADTTWVDKPSLHSASQPSIVTDI---PLSTKRDSLFADRESQLD 276
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
SL PS+ ++ Q + LR S+ L S IVT +
Sbjct: 277 SLLPPSTMSMY-GQDSSLSGLRSSA------------------LSRPSAPPIVTTVIQTM 317
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLL 532
+P + + G G+N+ +R+ SGA + V E R+ D I+V I GT + Q AQ L+
Sbjct: 318 QIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV--PDEIIVEIKGTSSQVQTAQQLI 375
Query: 533 QAFI 536
Q I
Sbjct: 376 QEVI 379
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 166/362 (45%), Gaps = 43/362 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQG-----MDHLGLS 412
+SS + YS D ASF S+ ++ D PPL QG L
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKL 242
Query: 413 HSLDCPSS--PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
H L S P +G+ S +V W GL+ A T+
Sbjct: 243 HQLAMQQSHFPMTHGNTGFSGIE-SSSPEVKGYW---------GLD-------ASAQTTS 285
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ
Sbjct: 286 HELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQY 345
Query: 531 LL 532
L+
Sbjct: 346 LI 347
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 276 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTD 328
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 329 RQVTITGSAASISLAQYLINVRL 351
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 164/349 (46%), Gaps = 18/349 (5%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS + R ++ H+ S+ ++ D PP Q + +++ P KL
Sbjct: 183 SSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPP--QEAYTIQGQYAIPQPDLTKL 240
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ G + S + G G A T+ E+ +P ++IG +
Sbjct: 241 HQLAMQQSHFPMSHGNTGFSGVESSSPDEKGYWAG---LDASAQTTSHELTIPNDLIGCI 297
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 298 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 346
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 43/366 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 80
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 81 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 137
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 138 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 194
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQG-----MDH 408
R + +SS + YS D ASF S+ ++ D PPL QG
Sbjct: 195 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 254
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L H L S T + SS +G+ L T
Sbjct: 255 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWASLDAS---------------TQ 299
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ A
Sbjct: 300 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLA 359
Query: 529 QSLLQA 534
Q L+ A
Sbjct: 360 QYLINA 365
>gi|255551350|ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 537
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 106/167 (63%), Gaps = 11/167 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E S +ILCS K+G VIGKGG+ ++ +Q + GA I V E DER+I V+AS E+
Sbjct: 312 EFSMKILCSAGKIGGVIGKGGSNVKVVQQDTGASIHVEDASAESDERVIRVSAS---EAL 368
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
++P + + + +L TS DFS KG + RL+V S++VGC+LG+GG +I+EMR
Sbjct: 369 WNPRSQTIDAIL-QLQNKTS----DFSE-KG-TITTRLLVPSSKVGCILGQGGQVINEMR 421
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ T IR+ S D+ KC SE++ +VQISG+F KDA+ + RLR
Sbjct: 422 RRTQADIRVYSKDEKPKCASEDEELVQISGKFGVAKDALAEIASRLR 468
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 98/186 (52%), Gaps = 21/186 (11%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR--- 244
+RILC + K+G VIGKGG II+ L+ E A I+V +P DER+I + +S SR
Sbjct: 47 YRILCPSRKIGGVIGKGGGIIKGLREETQAKITVADPVPGSDERVIIIYSSPEKISRNHN 106
Query: 245 ----------------YSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASN 287
Y AQ A++ V R++E G+ N+ V ARL+V +N
Sbjct: 107 DHEDLTMENEQDIMEPYCAAQDALLKVHDRIVEEDLFGGMTSDDDNENGFVTARLLVPNN 166
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
VGCLLGK G +I +R TG +IR++ +D L C D +VQIS + K A+Y V+
Sbjct: 167 MVGCLLGKRGDVIQRLRSETGANIRVLPADHLPTCAMSTDELVQISAKPDVAKKALYEVS 226
Query: 347 GRLRDN 352
L N
Sbjct: 227 TLLHQN 232
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV----HEPR 508
GG+ +++ VT ++VP N++G + G+ G + RLR +GA + V H P
Sbjct: 144 GGMTSDDDNENGFVT---ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPADHLPT 200
Query: 509 LG-STDRIVVISGTPDETQAA 528
STD +V IS PD + A
Sbjct: 201 CAMSTDELVQISAKPDVAKKA 221
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 159/351 (45%), Gaps = 61/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPIAP-- 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ Q TG+ +Q SH E+ +P ++IG +
Sbjct: 226 -SNQGFTGMD---------ASAQTSSH---------------------EMTIPNDLIGCI 254
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+P A+ L+ A
Sbjct: 255 IGRQGAKINEIRQMSGAQIKIANPVDGSTDRQVTITGSPASISLAEYLINA 305
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 86/219 (39%), Gaps = 54/219 (24%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS- 238
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P ER IT+ +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 239 -------------------EGPESRYSPAQKAVVLVF----SRLIEGT------------ 263
+G Y P ++F + ++G
Sbjct: 153 QSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 264 -------------SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
S +G + + + ++ +GC++G+ G I+E+R+++G
Sbjct: 213 QLAMQQSPFPIAPSNQGFTGMDASAQTSSHEMTIPNDLIGCIIGRQGAKINEIRQMSGAQ 272
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
I+I + DR V I+G + + A Y + RL
Sbjct: 273 IKIAN----PVDGSTDRQVTITGSPASISLAEYLINARL 307
>gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding protein, splicevariant E [Mus musculus]
Length = 349
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/351 (26%), Positives = 163/351 (46%), Gaps = 33/351 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+SS + YS D ASF S++++ D PPL + + P P
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMSLNPDLEGPPL----EAYTIQGQYAIPQ-P 237
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
L T +H + G + GL+ A T+ E+ +P ++IG
Sbjct: 238 DL------TKLHQLAMQQSHFPMTHGNTGFSAGLD-------ASAQTTSHELTIPNDLIG 284
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 285 CIIRRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 335
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 104/184 (56%), Gaps = 17/184 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS----- 238
++ +R LC K G++IG+GG I + ++SE A + + +P CDER++T+ ++
Sbjct: 16 EDTVYRYLCPVRKAGSIIGRGGEIAKQIRSETKANMRINEALPGCDERVVTIYSNSEETN 75
Query: 239 --EGPESRYSPAQKAVVLVFSRLI------EGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
E E PA A+ V ++ +G + G ++S + + V R++V S+Q+G
Sbjct: 76 RIEDDEDFVCPAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTV--RMLVPSDQIG 133
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGR 348
CL+GKGG +I ++R T IR+I+D L C +D ++QI G+ S V++A+Y V
Sbjct: 134 CLIGKGGQVIQKLRNDTNAQIRVINDNLPICALALSHDELLQIIGDPSAVREALYQVAFL 193
Query: 349 LRDN 352
L DN
Sbjct: 194 LYDN 197
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 97/181 (53%), Gaps = 17/181 (9%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDER---LIT 234
DAR S +C + VG VIGKGG I + E+GA I V PE DE +I
Sbjct: 240 DARV----FSICFICPAENVGGVIGKGGCFINQTRQESGATIKVHT--PETDEDDDCIIF 293
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
++A E E + SP A + + +R E + D + ++ R+++ S+QVGCL+G
Sbjct: 294 ISAKEFFEDQ-SPTVNAALRLQTRCSEKVGKDSSDSA------ISTRVLIPSSQVGCLIG 346
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
KGG +ISEMR VT +IRI + + I+ EN+ +VQI+G A+ V RLR N
Sbjct: 347 KGGALISEMRSVTKANIRIFQGEDVPRIARENEEMVQITGSLDAAIKALTQVMLRLRANV 406
Query: 354 F 354
F
Sbjct: 407 F 407
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 95/209 (45%), Gaps = 49/209 (23%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC------DERLI 233
+++Q V+ R+L +D++G +IGKGG +I+ L+++ A I V +P C DE L
Sbjct: 116 SERQTVTVRMLVPSDQIGCLIGKGGQVIQKLRNDTNAQIRVINDNLPICALALSHDELLQ 175
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK--------GLLV------- 278
+ S ++A+ V L + S F S+ G+L+
Sbjct: 176 IIGDP-------SAVREALYQVAFLLYDNPSRFQNYFLSSSSTLQHQPGGILMSPAITSS 228
Query: 279 -----------NAR-----LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCI 322
+AR + + VG ++GKGG I++ R+ +G +I++ + + +
Sbjct: 229 HKNYSAPRDAADARVFSICFICPAENVGGVIGKGGCFINQTRQESGATIKVHTPETDE-- 286
Query: 323 SENDRVVQISG-EFSKVKDAVYNVTGRLR 350
++D ++ IS EF + + N RL+
Sbjct: 287 -DDDCIIFISAKEFFEDQSPTVNAALRLQ 314
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 92/355 (25%), Positives = 157/355 (44%), Gaps = 34/355 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 89 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 141
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 142 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 196
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 197 EIRESTGAQVQVAGDML---PNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 253
Query: 362 RTR--STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
R + ST + Y+ + + ++H QP + L P
Sbjct: 254 RPKPASTPVIFAGGQAYTIQ---GQYAIPHPDPLAHGLYQPSAILQLTKLHQLAMQQTPF 310
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
P T G L S +Q L GL+ A +T E+ +P ++
Sbjct: 311 PPLGQTNPAFPGEKLPLHSS---EEAQNLMGQSPGLD-------ASPPASTHELTIPNDL 360
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 361 IGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 415
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 44/353 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H P LT+ + L + + P P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 255
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 256 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 305
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 306 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 44/353 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H P LT+ + L + + P P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 255
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 256 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 305
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 306 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 44/353 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H P LT+ + L + + P P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 255
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 256 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 305
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 306 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 183 ASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 225
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L GL+ A +T E+ +P ++I
Sbjct: 226 GQTTPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIPNDLI 273
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 274 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 57/359 (15%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
+VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP + KA ++
Sbjct: 5 EVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAIF---KAFAMI 56
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+L E + + ++ V RLVV + Q G L+GKGG I E+R+ TG +++
Sbjct: 57 IDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAG 116
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSP 375
D L + +R + I+G V + V + + + TL+ + ++ + P
Sbjct: 117 DMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGRVMTIPYQPMP 168
Query: 376 YS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S R D A + H++ HD PPL + +
Sbjct: 169 ASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL----------------DAYSIQG 207
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV----------TNTTVEIIV 475
T++ + L + V R S H G G S S V T TT E+ +
Sbjct: 208 QHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTI 267
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 268 PNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 326
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 166/360 (46%), Gaps = 40/360 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS + R ++ H+ S+ ++ D PP Q + +++ P KL
Sbjct: 183 SSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPP--QEAYTIQGQYAIPQPDLTKL 240
Query: 424 W----------TAQTVTGVH-LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ TG + SS +G+ GL A T+ E
Sbjct: 241 HQLAMQQSHFPMSHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQTTSHE 286
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 287 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 346
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 166/369 (44%), Gaps = 57/369 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H+ +HD PL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHA----THDLEGTPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T TT E+ +P N+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+
Sbjct: 277 STQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASI 336
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 337 SLAQYLINA 345
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 256 FSRLIEGTSEKGLDFSSN--KGLLVNA--------RLVVASNQVGCLLGKGGTIISEMRK 305
F+ + GT G+D SS KG + L + +N +GC++G+ G I+E+R+
Sbjct: 248 FAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQ 307
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
++G I+I + + R V I+G + + A Y + RL
Sbjct: 308 MSGAQIKIAN----PVEGSSGRQVTITGSAASISLAQYLINARL 347
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 41/363 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 101 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 158 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QG---MDHLGLS--HSLD 416
S+ + R A+ + S+ + H PPL QG + H L+ H L
Sbjct: 215 ASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKLHQLA 270
Query: 417 CPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
+P QT + L S + +Q L GL+ A +T
Sbjct: 271 MQQTPFPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTH 318
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L
Sbjct: 319 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 378
Query: 532 LQA 534
+ A
Sbjct: 379 INA 381
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 41/363 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 101 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 158 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QG---MDHLGLS--HSLD 416
S+ + R A+ + S+ + H PPL QG + H L+ H L
Sbjct: 215 ASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKLHQLA 270
Query: 417 CPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
+P QT + L S + +Q L GL+ A +T
Sbjct: 271 MQQTPFPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTH 318
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L
Sbjct: 319 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 378
Query: 532 LQA 534
+ A
Sbjct: 379 INA 381
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 165/363 (45%), Gaps = 41/363 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 101 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 158 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT----QG---MDHLGLS--HSLD 416
S+ + R A+ + S+ + H PPL QG + H L+ H L
Sbjct: 215 ASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKLHQLA 270
Query: 417 CPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
+P QT + L S + +Q L GL+ A +T
Sbjct: 271 MQQTPFPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTH 318
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L
Sbjct: 319 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 378
Query: 532 LQA 534
+ A
Sbjct: 379 INA 381
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 42/364 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DH 408
R + +SS + YS D ASF S+ ++ D PPL QG
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 242
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L H L S T + SS +G+ GL A
Sbjct: 243 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQT 288
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ A
Sbjct: 289 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 348
Query: 529 QSLL 532
Q L+
Sbjct: 349 QYLI 352
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 163/364 (44%), Gaps = 42/364 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 80
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 81 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 137
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 138 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 194
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQGM-----DH 408
R + +SS + YS D ASF S+ ++ D PPL QG
Sbjct: 195 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 254
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L H L S T + SS +G+ GL A
Sbjct: 255 LTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLD--------------ASAQT 300
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ A
Sbjct: 301 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 360
Query: 529 QSLL 532
Q L+
Sbjct: 361 QYLI 364
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 36/349 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 103
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 104 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 160
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 161 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 217
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H P LT+ + L + + P P T
Sbjct: 218 ASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPPLGQT 262
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
G L S +Q L GL+ A +T E+ +P ++IG + G
Sbjct: 263 NPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIGCIIG 312
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 313 RQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 361
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 94 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 153
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 154 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 186
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 254 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 301
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|308321889|gb|ADO28082.1| poly(rc)-binding protein 2 [Ictalurus furcatus]
Length = 318
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P +F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVTFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPLAPS- 226
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G++ G+ A + E+ +P ++IG +
Sbjct: 227 -----------------SQGFTAGM--------------DATTQTGSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GS DR V I+G+P A+ L+ A
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSPASISLAEYLINA 306
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 61/223 (27%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMP------------- 226
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 227 ----ECDERLITVTASEGPES---RYSPAQKAVVLVFS----RLIEGTSE---------- 265
EC +++ V P+ Y P + F+ ++G
Sbjct: 153 LSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVTFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 266 -------------------KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
G+D ++ G + L + ++ +GC++G+ G I+E+R++
Sbjct: 213 QLAMQQSPFPLAPSSQGFTAGMDATTQTG---SHELTIPNDLIGCIIGRQGAKINEIRQM 269
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I + NDR V I+G + + A Y + RL
Sbjct: 270 SGAQIKIANP----VEGSNDRQVTITGSPASISLAEYLINARL 308
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 26/162 (16%)
Query: 79 VEAVPQEILWRSLESGPQ--EILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILP 136
+E V Q I LES P+ I RP +P + +A +++ QH A+ Q L
Sbjct: 156 IECVKQ-ICVVMLESPPKGVTIPYRPKPSGSP-VTFAGGQAYAVQGQH----AIPQPDLT 209
Query: 137 DLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDK 196
LH L+ + S APSS A +DA TQ S + ND
Sbjct: 210 KLHQ--LAMQQSPFPLAPSSQ--------------GFTAGMDATTQTG--SHELTIPNDL 251
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
+G +IG+ G I ++ +GA I + + ++R +T+T S
Sbjct: 252 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGS 293
>gi|193848519|gb|ACF22709.1| hypothetical protein-2 [Brachypodium distachyon]
Length = 429
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 7/150 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q++SFR+LC + G +IGK G II+ ++E GA I VG C ER+IT++A E P
Sbjct: 279 QQISFRLLCHVNLAGGLIGKKGMIIKGFETETGASIDVGNPFSGCMERVITISALESP-G 337
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
++S Q A++ +F R+ E E+ L F + +AR++V +Q L+G GG II EM
Sbjct: 338 KHSKVQSAILCIFDRMEE--VERNLMFGKPE---CSARVLVPKSQFSSLVGLGGAIIKEM 392
Query: 304 RKVTGTSIRIISDQ-LLKCISENDRVVQIS 332
K TG I I+ + + C S +RV+Q S
Sbjct: 393 VKSTGARIEILDEMDVPACASNCERVLQAS 422
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 127/317 (40%), Gaps = 38/317 (11%)
Query: 90 SLESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSV 149
+LE P++ R V P S R EA S + L + +QE L + VD+ + V
Sbjct: 76 ALEGYPEDAASRVAVVLGPTSPTRPVEASSSSSGEPLQLSPAQEALVSV-VDVGGVLHRV 134
Query: 150 LTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRI----------LCSNDKVGA 199
+ AP +S + V LE+ TL+A + R+ + S +V
Sbjct: 135 VARAP-EFVSCLVLVEAAGLEALGRGTLEAIASETNAELRVTSLAEGATPSVHSPKEVIE 193
Query: 200 VIGKGGTIIRA-------LQSEAGAF-ISVGATMPECDERLITVTASEGPESRYSPAQKA 251
+ G TI +A LQ + A ++ T P + +SE PE Y
Sbjct: 194 ITGDRTTIRKAIVALSSYLQGDLHACSLTTSVTTP---SPMFPWKSSEVPEPNYGDLHSG 250
Query: 252 VVLVFSRL----IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
V + + I+ + + + ++ RL+ N G L+GK G II T
Sbjct: 251 VSTKCANINVPWIDCPQDVAGNVETENLQQISFRLLCHVNLAGGLIGKKGMIIKGFETET 310
Query: 308 GTSIRIISDQLLKCISENDRVVQIS-----GEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
G SI + + C+ +RV+ IS G+ SKV+ A+ + R+ + L +
Sbjct: 311 GASID-VGNPFSGCM---ERVITISALESPGKHSKVQSAILCIFDRMEE--VERNLMFGK 364
Query: 363 TRSTSSVLTETSPYSRL 379
++ VL S +S L
Sbjct: 365 PECSARVLVPKSQFSSL 381
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 155/353 (43%), Gaps = 43/353 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 179 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
QT S +Q L GL+ A +T E+ +P ++IG
Sbjct: 222 FPPLGQTNPAFPGEKLSLHSSEEAQNLMGQPSGLD-------ASPPASTHELTIPNDLIG 274
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 275 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 45 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 97
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 98 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 152
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 153 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 209
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 210 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 252
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 253 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 300
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 301 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 90 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 149
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 150 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 182
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 183 ASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFPPL 225
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L GL+ A +T E+ +P ++I
Sbjct: 226 GQTTPAFPGEKLPLHSSEE-----AQNLMGQSPGLD-------ASPPASTHELTIPNDLI 273
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 274 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S P
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFPMT 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G+ SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 225 HGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIGCI 268
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 269 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|348537598|ref|XP_003456280.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 593
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 170/363 (46%), Gaps = 44/363 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A I++ C ER+IT+T GP
Sbjct: 128 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITIT---GPTD-- 180
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
V F+ + E + +N + V RLV+ ++Q G L+GKGG+ I
Sbjct: 181 -----CVFRAFTMITFKLEEDLMALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIK 235
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 236 EIRETTGAQVQVAGDLL---PNSTEREVTISGSQDAIIQCVKLICTVILESPPKGATIPY 292
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH---DFSQPPLTQGMDHLGLSHSLDCP 418
R T + +++ + + FG H +V+ D Q Q H G+ HS
Sbjct: 293 RPSPTPGTVLLAG--NQVFEASDFGSHPLFSVAQGGVDLQQTYAVQ--SHYGIPHS---- 344
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
+L ++ + +G + + + +Q L GG+E S T+ E+++P +
Sbjct: 345 ---ELAKLHQLS-MQQQGLAPISQSATQVL---PGGVEANS-------QTTSQELLIPND 390
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
+IGS+ G G+ + +RQ+SGA++ + ++DR V ISGTP AQ L+ + + T
Sbjct: 391 LIGSIIGRQGTKINEIRQVSGAQIKIGSQIDSTSDRHVTISGTPIAINLAQYLITSCLET 450
Query: 539 GPS 541
S
Sbjct: 451 AKS 453
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
+ T P+ + + LE D +A + T + V+ R++ + G++IGKGG+
Sbjct: 173 ITITGPTDCVFRAFTMITFKLEEDLMALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGS 232
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASE 239
I+ ++ GA + V G +P ER +T++ S+
Sbjct: 233 KIKEIRETTGAQVQVAGDLLPNSTEREVTISGSQ 266
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 59 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 111
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 112 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 166
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 167 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 223
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 224 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 266
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 267 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 314
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 315 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 372
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 104 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 163
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 164 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 196
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 254 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 301
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 42.4 bits (98), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 160/353 (45%), Gaps = 44/353 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H P LT+ + L + + P P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 255
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 256 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 305
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 306 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 358
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/349 (26%), Positives = 162/349 (46%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S P
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFPMS 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+GV SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 225 HGNTGFSGVE--SSSPDEKGYWAGL--------------DASAQTTSHELTIPNDLIGCI 268
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 269 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 106/263 (40%), Gaps = 70/263 (26%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTASSRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMP-----------------ECDERLITVTASEGPES---RYSPAQ 249
++ GA + V G +P EC +++ V P+ Y P
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 250 KAVVLVFS----RLIEG----------------------------TSEKGLDFSSNK--- 274
+ ++F+ I+G T G++ SS
Sbjct: 183 SSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHGNTGFSGVESSSPDEKG 242
Query: 275 ---GLLVNAR-----LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GL +A+ L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 243 YWAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTD 298
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 299 RQVTITGSAASISLAQYLINVRL 321
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 167/367 (45%), Gaps = 49/367 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL----TQG---MDHLGLS-- 412
R + S+ + R A+ + S+ + H PPL QG + H L+
Sbjct: 179 RPKPASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKL 234
Query: 413 HSLDCPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L +P QT + L S + +Q L GL+ A
Sbjct: 235 HQLAMQQTPLPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPP 282
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 528 AQSLLQA 534
AQ L+ A
Sbjct: 343 AQYLINA 349
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/365 (29%), Positives = 168/365 (46%), Gaps = 59/365 (16%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E A I V +R++ ++ E ES SP
Sbjct: 83 FRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEELESPLSP 142
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A AV+ VF R + G SE + K + RL+VAS Q L+GK G++I +++ T
Sbjct: 143 AMDAVIRVFKR-VSGLSE---NEDEAKASFCSIRLLVASTQAINLIGKQGSLIKSIQEST 198
Query: 308 GTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD---NH-----FSGTL 358
G S+R++S D++ ++R+V++ GE KV A+ V G LR +H F +
Sbjct: 199 GASVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGHLRKFLVDHSVLPLFEKSF 258
Query: 359 NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
NT ++ TET D +S S +S +++ P T+ SL
Sbjct: 259 NTPASQDRQ---TET-----WADKSSLLTASQSIISAEYA--PSTK-------RESLFLD 301
Query: 419 SSPKLWTAQTVTGVHLRG---------SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+ + +G+ L G SS VGR S IVT
Sbjct: 302 REAHFDSHISSSGISLYGQDRVLPTIRSSGVGR------------------SGGPIVTQV 343
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAA 528
T + +P + + G G+N+ +R+ SGA + + E R G D I V I GT + Q A
Sbjct: 344 TQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESR-GLPDEITVEIKGTSSQVQMA 402
Query: 529 QSLLQ 533
Q L+Q
Sbjct: 403 QQLIQ 407
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 162/355 (45%), Gaps = 37/355 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R + +SS + YS D ASF S+ ++ D PPL + +
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL----EAYTIQGQYAI 238
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
P P L T +H + G + GL+ A T+ E+ +P
Sbjct: 239 P-QPDL------TKLHQLAMQQSHFPMTHGNTGFSAGLD-------ASAQTTSHELTIPN 284
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 285 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 339
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 161/350 (46%), Gaps = 49/350 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS-------HF 221
Query: 424 WTAQTVTGVH-LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ TG + SS +G+ GL A T+ E+ +P ++IG
Sbjct: 222 PMSHGNTGFSGIESSSPEVKGYWAGL--------------DASAQTTSHELTIPNDLIGC 267
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 268 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 98/367 (26%), Positives = 167/367 (45%), Gaps = 49/367 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL----TQG---MDHLGLS-- 412
R + S+ + R A+ + S+ + H PPL QG + H L+
Sbjct: 179 RPKPASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKL 234
Query: 413 HSLDCPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L +P QT + L S + +Q L GL+ A
Sbjct: 235 HQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPP 282
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 528 AQSLLQA 534
AQ L+ A
Sbjct: 343 AQYLINA 349
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 49 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 101
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 102 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 156
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 157 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 213
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 214 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 256
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 257 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 304
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 305 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 362
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 94 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 153
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 154 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 186
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 254 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 301
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|301604860|ref|XP_002932078.1| PREDICTED: poly(rC)-binding protein 3-like [Xenopus (Silurana)
tropicalis]
Length = 339
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/354 (24%), Positives = 157/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 183 ASAPVI-------FAGGQAYSIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 225
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L G++ S + +T E+ +P ++I
Sbjct: 226 GQTTPAFPGEKLPLHSSEE-----AQNLMGQSAGMDASSQA-------STHELTIPNDLI 273
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS +R + I+G+P AQ L+ A
Sbjct: 274 GCIIGRQGTKINEIRQMSGAQIKIASAMEGSAERQITITGSPANISLAQYLINA 327
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 164/350 (46%), Gaps = 21/350 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHS--SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS + R ++ H+ S+ ++ D PP Q + +++ P KL
Sbjct: 183 SSSPVIFAGGQDRYSSGSASYPHTAPSMCLNSDLEGPP--QEAYTIQGQYAIPQPDLTKL 240
Query: 424 WTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ G G KG L + +++ T+ E+ +P ++IG
Sbjct: 241 HQLAMQQSHFPMSHGNTGFSGIESSSPEVKGYWGLDASAQT-----TSHELTIPNDLIGC 295
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 296 IIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 345
>gi|449265657|gb|EMC76819.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 343
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 35/355 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TSSVLTETSPYSRLKDP-ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD-CPSSPKL 423
S+ + R AS G H+ L LS+ D C +
Sbjct: 186 ASAPIIFAGGQVRADTILASAGNHT------------------ELRLSYLTDLCLNCACC 227
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHK----GGLELGSGSKSAIVTNTTVEIIVPENV 479
+ A T+ G + D+ + + H G G A ++ E+ +P ++
Sbjct: 228 FQAFTIQGQYAIPHPDLTKLHQLAMQHPPFTPLGQTTPGFPGLDATTPTSSHELTIPNDL 287
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
IG + G GS + +RQ+SGA++ + GS +R V I+G+P AQ L+ A
Sbjct: 288 IGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQYLINA 342
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|387915508|gb|AFK11363.1| alphaCP-3 [Callorhinchus milii]
Length = 349
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 158/358 (44%), Gaps = 43/358 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGMPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHD-----FSQPPLTQGMDHLGLSHSLDCPSS 420
S+ + ++ + A+ H S T L S L PSS
Sbjct: 183 ASAPVI-------FAGGQAYTIQGQCAIPHPDDACLLSAEYKTALTSTLWRSPQLAHPSS 235
Query: 421 ---PKLWTAQTVTG-VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
W +++ G + L+ ++ W + +T E+ +P
Sbjct: 236 QLKEAAWRPESLRGKMELKNCNEESENWGMDANPQA----------------STHELTIP 279
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GST+R + I+G+P AQ L+ A
Sbjct: 280 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSTERQITITGSPANISLAQYLINA 337
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESD--RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D T T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTA 237
I+ ++ GA + V G +P ER +T++
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISG 150
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 163/359 (45%), Gaps = 33/359 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG---MDHLGLS--HSLDCPSS 420
S+ + R A+ + S+ + H QG + H L+ H L +
Sbjct: 183 ASTPVIFAGGQVRADPLAASTANLSLLLQHQPLPAYTIQGQYAIPHPDLTKLHQLAMQQT 242
Query: 421 PKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P QT + L S + +Q L GL+ A +T E+ +
Sbjct: 243 PFPPLGQTTPAFPGEKLPLHSSEE-----AQNLMGQSPGLD-------ASPPASTHELTI 290
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 291 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 349
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 164/358 (45%), Gaps = 35/358 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ L E A + V ER++ V+A E P P
Sbjct: 53 FRMVVPVLKVGSIIGRKGELIKRLVEETKARVRVLEGPVGATERIVLVSAKEDPGLELPP 112
Query: 248 AQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A A++ VF R+ I + +G S+ G+ ARLVV Q L+GK G I +++
Sbjct: 113 AMDALIRVFKRVNGISDGAAEGTQTSAAPGVCA-ARLVVPGAQAINLIGKQGASIKAIQE 171
Query: 306 VTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
TG +IR+IS D+ + +++++R+V+I GE KV A+ V+ LR ++
Sbjct: 172 GTGATIRVISVDERDRPFYVTDDERIVEIQGETEKVLKALQAVSNHLRKFLVDHSVLPLF 231
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP------LTQGMDHLGLSHSLD 416
++ + V + S + P H S+ + QP L DHL L
Sbjct: 232 EKTNAPVSQDRSAETWNDMP-----HHSIVSTQVNQQPEVRDEYVLPMKRDHLYLERE-- 284
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
+H G S GR LS + G+G ++T T + +P
Sbjct: 285 ---------PLVEHNIHRSGVSLYGR--DPALSALRPSGMHGAGP---LLTQITQTMQIP 330
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQ 533
+ G G+N+ +R SGA V + E LGS D I V I GT + Q+AQ L+Q
Sbjct: 331 LTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQSAQQLIQ 387
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/368 (26%), Positives = 165/368 (44%), Gaps = 58/368 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI--SEGNCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H++ HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHAT----HDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS-----------A 464
+ + T++ + L + V R S H G G S S A
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWAGLDA 276
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
T+ E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+
Sbjct: 277 SAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAAS 336
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 337 ISLAQYLI 344
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 31/367 (8%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E+ A I + P ER + ++A + P++
Sbjct: 107 ESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAP 166
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA + V+ R+ +G+ N + RL+V ++Q G L+GK G I ++
Sbjct: 167 ISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPTRLLVPASQAGSLIGKQGATIKSIQ 226
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSG 356
+ + +RI+ L +++ DRVV+I GE V+ A+ ++ LR F G
Sbjct: 227 DSSKSIVRIVETLPLVALND-DRVVEIQGEPVGVQKALESIASHLRKFLVDRSVLPLFEG 285
Query: 357 TL---NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+ N R ++ ++ P P+ H PP Q
Sbjct: 286 QMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQD----NYYP 341
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
D PS K Q G+ S GR G+S G+ S + + T +
Sbjct: 342 PPDVPSMEK----QPHYGI-----SAYGREAPTGVSAS------GNQPPSHVASQVTHNM 386
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P + +V G G+++ +R+ SGA V + E R + V I G+ + Q AQ L+Q
Sbjct: 387 QIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQVQTAQQLVQ 446
Query: 534 AFILTGP 540
F+ P
Sbjct: 447 NFMAEAP 453
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 254 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 301
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 302 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 31/367 (8%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E+ A I + P ER + ++A + P++
Sbjct: 107 ESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAP 166
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA + V+ R+ +G+ N + RL+V ++Q G L+GK G I ++
Sbjct: 167 ISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPTRLLVPASQAGSLIGKQGATIKSIQ 226
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSG 356
+ + +RI+ L +++ DRVV+I GE V+ A+ ++ LR F G
Sbjct: 227 DSSKSIVRIVETLPLVALND-DRVVEIQGEPVGVQKALESIASHLRKFLVDRSVLPLFEG 285
Query: 357 TL---NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+ N R ++ ++ P P+ H PP Q
Sbjct: 286 QMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQD----NYYP 341
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
D PS K Q G+ S GR G+S G+ S + + T +
Sbjct: 342 PPDVPSMEK----QPHYGI-----SAYGREAPTGVSAS------GNQPPSHVASQVTHNM 386
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P + +V G G+++ +R+ SGA V + E R + V I G+ + Q AQ L+Q
Sbjct: 387 QIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQVQTAQQLVQ 446
Query: 534 AFILTGP 540
F+ P
Sbjct: 447 NFMAEAP 453
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 156/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 100
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 101 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 157
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 158 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 214
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 215 ASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFPPL 257
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L GL+ A +T E+ +P ++I
Sbjct: 258 GQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIPNDLI 305
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 306 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 359
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|449493846|ref|XP_002188887.2| PREDICTED: poly(rC)-binding protein 3-like [Taeniopygia guttata]
Length = 352
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 95/367 (25%), Positives = 160/367 (43%), Gaps = 65/367 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGT--CPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMT---NSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TSS-------------VLTETSPYSRLKDP---ASFGVHSSVAVSHDFSQPPLTQGMDHL 409
S+ +L ++ L P +F + A+ H P LT+ + L
Sbjct: 186 ASAPIIFAGGQVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPH----PDLTK-LHQL 240
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+ H P +P QT G GL+ A +
Sbjct: 241 AMQHP---PFTP---LGQTTPGFP--------------------GLD-------ATTPTS 267
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
+ E+ +P ++IG + G GS + +RQ+SGA++ + GS +R V I+G+P AQ
Sbjct: 268 SHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 327
Query: 530 SLLQAFI 536
L+ A I
Sbjct: 328 YLINASI 334
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ + T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 55/349 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDTI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVRQICVVMLESPPKGATIPYRPKP 184
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
TS+ + ++ + A+ H D L H L +P
Sbjct: 185 TSTPVI-------FSGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 227
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
QT G S S H E+ +P ++IG + G
Sbjct: 228 GQTTPAFP-------GLDASPPASTH--------------------ELTIPNDLIGCIIG 260
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 261 RQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 309
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVRQICVVMLESPPKGATIPY 180
Query: 246 SPAQKAVVLVFS----RLIEGT------------------------------SEKGLDFS 271
P + ++FS I+G + GLD S
Sbjct: 181 RPKPTSTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDAS 240
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 241 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQITI 293
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 294 TGTPANISLAQYLINARL 311
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S P
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFPMT 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G+ SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 225 HGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIGCI 268
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 269 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|118086587|ref|XP_419049.2| PREDICTED: poly(rC)-binding protein 3 [Gallus gallus]
Length = 448
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 65/365 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TSS-------------VLTETSPYSRLKDP---ASFGVHSSVAVSHDFSQPPLTQGMDHL 409
S+ +L ++ L P +F + A+ H P LT+ + L
Sbjct: 186 ASAPIIFAGGQVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPH----PDLTK-LHQL 240
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+ H P QT G GL+ S + S
Sbjct: 241 AMQH------PPFTPLGQTTPGFP--------------------GLDATSPTSSH----- 269
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
E+ +P ++IG + G GS + +RQ+SGA++ + GS +R V I+G+P AQ
Sbjct: 270 --ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 327
Query: 530 SLLQA 534
L+ A
Sbjct: 328 YLINA 332
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|326917277|ref|XP_003204927.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 448
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 65/365 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMT---NSSVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TSS-------------VLTETSPYSRLKDP---ASFGVHSSVAVSHDFSQPPLTQGMDHL 409
S+ +L ++ L P +F + A+ H P LT+ + L
Sbjct: 186 ASAPIIFAGGQVRADTILASAGNHTVLAQPQPAPAFTIQGQYAIPH----PDLTK-LHQL 240
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+ H P QT G GL+ S + S
Sbjct: 241 AMQH------PPFTPLGQTTPGFP--------------------GLDATSPTSSH----- 269
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
E+ +P ++IG + G GS + +RQ+SGA++ + GS +R V I+G+P AQ
Sbjct: 270 --ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVTITGSPANISLAQ 327
Query: 530 SLLQA 534
L+ A
Sbjct: 328 YLINA 332
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ + T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSSVTSKPPVTLRLVVPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 62/377 (16%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G +I+ + E A I + P ER + V+ E PES
Sbjct: 177 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 236
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
P+ ++ V R+++G G + V+ RL+V ++Q G L+GK G + ++
Sbjct: 237 LPPSMDGLLRVHMRIVDGLD--GEPSQAPPASKVSTRLLVPASQAGSLIGKQGGTVKAIQ 294
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLN 359
+ + +R++ + L + ++DRVV++ GE + V A+ + LR D
Sbjct: 295 EASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHKALELIASHLRKFLVDRSIIPFFE 354
Query: 360 TARTRSTSSVLTETSPYSRLKDP---------ASFG-----------VHSSVAVSHDFSQ 399
+ T + +P+ P +G H S + Q
Sbjct: 355 NQMQKPTRQMDHMPAPHQAWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPEMRQ 414
Query: 400 PPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGS 459
PP+ + H G+S + + VH+ S
Sbjct: 415 PPMEK-QPHQGIS----------AYGREPPMNVHV------------------------S 439
Query: 460 GSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
+ + T ++ +P + +V G +GSN+ R++SGA V + E R + V +S
Sbjct: 440 SAPPMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVS 499
Query: 520 GTPDETQAAQSLLQAFI 536
GT + Q A L+Q F+
Sbjct: 500 GTGSQVQTAMQLIQNFM 516
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 179 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 222 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 269
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 270 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/367 (26%), Positives = 159/367 (43%), Gaps = 31/367 (8%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E+ A I + P ER + ++A + P++
Sbjct: 109 ESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAP 168
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA + V+ R+ +G+ N + RL+V ++Q G L+GK G I ++
Sbjct: 169 ISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPTRLLVPASQAGSLIGKQGATIKSIQ 228
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSG 356
+ + +RI+ L +++ DRVV+I GE V+ A+ ++ LR F G
Sbjct: 229 DSSKSIVRIVETLPLVALND-DRVVEIQGEPVGVQKALESIASHLRKFLVDRSVLPLFEG 287
Query: 357 TL---NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
+ N R ++ ++ P P+ H PP Q
Sbjct: 288 QMKMHNAQREQAMAAPQPWGPPQPWGPPPSHLPPGGPGYGGHPQFMPPRPQD----NYYP 343
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
D PS K Q G+ S GR G+S G+ S + + T +
Sbjct: 344 PPDVPSMEK----QPHYGI-----SAYGREAPTGVSAS------GNQPPSHVASQVTHNM 388
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P + +V G G+++ +R+ SGA V + E R + V I G+ + Q AQ L+Q
Sbjct: 389 QIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQVQTAQQLVQ 448
Query: 534 AFILTGP 540
F+ P
Sbjct: 449 NFMAEAP 455
>gi|297735477|emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 98.6 bits (244), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 149/312 (47%), Gaps = 29/312 (9%)
Query: 230 ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE---KGLDFSSNKGLLVNARLVVAS 286
+R++ ++ E PE+ SPA AV+ VF R + G SE G + + + RL+VAS
Sbjct: 20 DRIVLISGREEPEAPLSPAMDAVIRVFKR-VTGLSESEGDGKAYGAAGVAFCSIRLLVAS 78
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNV 345
Q L+GK G++I +++ TG S+R++S D++ + ++R+V++ GE KV+ A+ V
Sbjct: 79 TQAINLIGKQGSLIKSIQESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAV 138
Query: 346 TGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG 405
G LR ++ R+ ++ +++ D + S + D+S P +
Sbjct: 139 VGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLPAKRES 198
Query: 406 MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
+ +L ++ P ++G+ SS +GR + + I
Sbjct: 199 L-YLDRETQMEHSGLPMYGQEHGLSGIR---SSGLGR------------------AGAPI 236
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDE 524
VT + +P + + G G+N+ +R+ SGA + V E R G D I V I GT +
Sbjct: 237 VTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESR-GLPDEITVEIKGTSSQ 295
Query: 525 TQAAQSLLQAFI 536
Q AQ L+Q FI
Sbjct: 296 VQTAQQLIQEFI 307
>gi|344306639|ref|XP_003421993.1| PREDICTED: poly(rC)-binding protein 3 [Loxodonta africana]
Length = 396
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 88/354 (24%), Positives = 156/354 (44%), Gaps = 45/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 71 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 125
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 126 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 182
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 183 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 239
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 240 ASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFPPL 282
Query: 426 AQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
QT + L S + +Q L GL+ A +T E+ +P ++I
Sbjct: 283 GQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIPNDLI 330
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+G+P AQ L+ A
Sbjct: 331 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGSPANISLAQYLINA 384
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 116 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 175
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 176 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 208
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 179 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 222 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 269
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 270 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 98.2 bits (243), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 160/361 (44%), Gaps = 46/361 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 20 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---------VNARLVVASNQVGCLLGKG 296
KA L+ + E S+ D + RL+V ++Q G L+GKG
Sbjct: 75 F---KAFTLICKKFEEWCSQF-HDIQGGGNAGGGGGVPRPPITLRLIVPASQCGSLIGKG 130
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G+ I E+R+VTG SI++ S+ L + +R V ISG + +Y++ + ++ G
Sbjct: 131 GSKIKEIREVTGASIQVASEMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKG 187
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
R P ++ P + + +++ P + M LG
Sbjct: 188 ATIPYR------------PKPQVGGPVILAGGQAFTIQGNYAVPAHSD-MGKLG------ 228
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK-SAIVTNTTVEIIV 475
SSP A G ++ G + + L + ++ N T E+ V
Sbjct: 229 --SSPLAGLAALGLGGLAAPANTGGLNPAALAALAGSQLRTNNANRQQPAANNQTHEMTV 286
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLL 532
P +IG + G+ G+ + +RQISGA + + E G TDR + I+G PD AQ L+
Sbjct: 287 PNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGPTDRTITITGNPDSVALAQYLI 346
Query: 533 Q 533
Sbjct: 347 N 347
>gi|392884376|gb|AFM91020.1| poly(rC) binding protein 3, isoform CRAb [Callorhinchus milii]
Length = 349
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 158/358 (44%), Gaps = 43/358 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRVESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGMPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHD-----FSQPPLTQGMDHLGLSHSLDCPSS 420
S+ + ++ + A+ H S T L S L PSS
Sbjct: 183 ASAPVI-------FAGGQAYTIQGQYAIPHPDDACLLSAEYKTALTSTLWRSPQLAHPSS 235
Query: 421 ---PKLWTAQTVTG-VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
W +++ G + L+ ++ W + +T E+ +P
Sbjct: 236 QLKEAAWRPESLRGKMELKNCNEESENWGMDANPQA----------------STHELTIP 279
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GST+R + I+G+P AQ L+ A
Sbjct: 280 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSTERQITITGSPANISLAQYLINA 337
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESD--RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D T T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAFKFEEDINNSMTNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTA 237
I+ ++ GA + V G +P ER +T++
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISG 150
>gi|318054596|ref|NP_001188110.1| poly(rC)-binding protein 2 [Ictalurus punctatus]
gi|308322769|gb|ADO28522.1| poly(rc)-binding protein 2 [Ictalurus punctatus]
Length = 318
Score = 98.2 bits (243), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPLAPS- 226
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G++ G+ A + E+ +P ++IG +
Sbjct: 227 -----------------SQGFTAGM--------------DATTQTGSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GS DR V I+G+P A+ L+ A
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSPASISLAEYLINA 306
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 61/223 (27%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMP------------- 226
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 227 ----ECDERLITVTASEGPES---RYSPAQKAVVLVFS----RLIEGTSE---------- 265
EC +++ V P+ Y P ++F+ ++G
Sbjct: 153 LSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 266 -------------------KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
G+D ++ G + L + ++ +GC++G+ G I+E+R++
Sbjct: 213 QLAMQQSPFPLAPSSQGFTAGMDATTQTG---SHELTIPNDLIGCIIGRQGAKINEIRQM 269
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I + NDR V I+G + + A Y + RL
Sbjct: 270 SGAQIKIANP----VEGSNDRQVTITGSPASISLAEYLINARL 308
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 41/363 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIVNSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL----TQG---MDHLGLS--HSLD 416
S+ + R A+ + S+ + H PPL QG + H L+ H L
Sbjct: 183 ASTPVIFAGGQVRADPLAASTANLSLLLQH----PPLPAYTIQGQYAIPHPDLTKLHQLA 238
Query: 417 CPSSPKLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
+P Q + L S + +Q L GL+ A +T
Sbjct: 239 MQQTPFPPLGQANPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTH 286
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L
Sbjct: 287 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYL 346
Query: 532 LQA 534
+ A
Sbjct: 347 INA 349
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D V ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIVNSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANISLA 343
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 344 QYLINARL 351
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/361 (26%), Positives = 156/361 (43%), Gaps = 26/361 (7%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG +IG+ G I+ + E A + + P +R + ++A E P S
Sbjct: 46 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSS 105
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V R+I+G S V+ +L+V ++Q G L+GK G + ++
Sbjct: 106 VPPAVDGLLRVHKRIIDGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 165
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFS 355
+ + +R++ + L + ++DRVV++ G+ + V A+ + LR F
Sbjct: 166 EASNCIVRVLGAEDLPIFALQDDRVVEVVGDPTGVHKALELIASHLRKFLVDRGVIPIFE 225
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+ TA T + S P + G S + PP L
Sbjct: 226 MNMQTANTHHAEHMPPHQSWGPPQGLPPNVGGGSGFGPPSQYMPPP-----------RQL 274
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
D P H +G S GR S G+ H + S +IVT T ++ +
Sbjct: 275 DSYYPPAEMPPPVDRQPH-QGISAYGRDASIGV-HASSNTQ----SAPSIVTQITQQMQI 328
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P + +V G G+++ +R+ SGA V + E R + V ISGT + Q AQ L+Q F
Sbjct: 329 PLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQQLIQNF 388
Query: 536 I 536
+
Sbjct: 389 M 389
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 50/354 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HF 225
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P +G+ SS +G+ L T TT E+ +P N+I
Sbjct: 226 PMTHGNTGFSGIE--SSSPEVKGYWASLDAS---------------TQTTHELTIPNNLI 268
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 269 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 322
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 160/349 (45%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S P
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFPMT 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G+ SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 225 HGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIGCI 268
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ P GSTDR V I+G+ AQ L+
Sbjct: 269 IGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|41055221|ref|NP_957486.1| poly(rC)-binding protein 2 [Danio rerio]
gi|28279638|gb|AAH45508.1| Poly(rC) binding protein 2 [Danio rerio]
gi|37681899|gb|AAQ97827.1| poly(rC) binding protein 2 [Danio rerio]
gi|42744604|gb|AAH66603.1| Pcbp2 protein [Danio rerio]
Length = 318
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 158/351 (45%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPLSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPLAPS- 226
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G++ G+ A + E+ +P ++IG +
Sbjct: 227 -----------------SQGFTAGM--------------DASAQTGSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GS+DR V I+G+P A+ L+ A
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSSDRQVTITGSPASISLAEYLINA 306
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 61/223 (27%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS- 238
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P ER IT+ +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGTP 152
Query: 239 -------------------EGPESRYSPAQKAVVLVF----SRLIEGT------------ 263
+G Y P ++F + ++G
Sbjct: 153 LSIIECVKQICVVMLESPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQPDLTKLH 212
Query: 264 -------------SEKG----LDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
S +G +D S+ G + L + ++ +GC++G+ G I+E+R++
Sbjct: 213 QLAMQQSPFPLAPSSQGFTAGMDASAQTG---SHELTIPNDLIGCIIGRQGAKINEIRQM 269
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I + +DR V I+G + + A Y + RL
Sbjct: 270 SGAQIKIANP----VEGSSDRQVTITGSPASISLAEYLINARL 308
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/362 (26%), Positives = 162/362 (44%), Gaps = 49/362 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--------VNARLVVASNQVGCLLGKGG 297
KA L+ + E S+ D + RL+V ++Q G L+GKGG
Sbjct: 70 F---KAFTLICKKFEEWCSQF-HDIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKGG 125
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
+ I E+R+VTG SI++ S+ L + +R V ISG + +Y++ + ++ G
Sbjct: 126 SKIKEIREVTGASIQVASEMLP---NSTERAVTISGTSEAITQCIYHICCVMLESPPKGA 182
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R P ++ P + + +++ P + M LG
Sbjct: 183 TIPYR------------PKPQVGGPVILAGGQAYTIQGNYAVPAHSD-MGKLG------- 222
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL---GSGSKSAIVTNTTVEII 474
S+P A G ++ G G + G +L + + N T E+
Sbjct: 223 -SNPLASLAALGLGGLAT-PANTG-GLNPAALAALAGSQLRTSNTNRQQPAANNQTHEMT 279
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSL 531
VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD AQ L
Sbjct: 280 VPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYL 339
Query: 532 LQ 533
+
Sbjct: 340 IN 341
>gi|328720738|ref|XP_001949210.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 167/361 (46%), Gaps = 60/361 (16%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGA--FISVGATMPECDERLITVTASEGPE 242
++ RIL +VG VIGKGG ++ ++ ++GA IS G+T ER++T+T +
Sbjct: 20 NLTIRILFHGREVGNVIGKGGETVKNIRDQSGARVLISDGST----PERIVTITGTT--- 72
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+ KA L+ ++ E + D++ K L +L+V ++Q G ++GKGG I E
Sbjct: 73 ---NAICKATELIGLKVEEFFERQNGDWNGPKAPLT-FKLIVPASQCGFIIGKGGCKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+ +G +I++ SD L + +R+V I+G + VY V L D
Sbjct: 129 IRESSGAAIQVASDMLP---NSTERLVSITGTTGTISQCVYQVCNVLLD----------- 174
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP---PLTQGMDHLGLSHSLDCPS 419
S + T PY + F +S AV +DF + PL + LGL +
Sbjct: 175 ----SPPRSATIPYDPRSKTSGF---ASSAVGNDFGRQRTNPLAS-LAALGLGTASTGGI 226
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
+P A + G LR + R G HK ++++ T+ + VP ++
Sbjct: 227 NPAALAA--LAGSQLRTGNRQNR---NGSGEHK--------NQNSNSNTETISMTVPNDL 273
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPRLGST-------DRIVVISGTPDETQAAQSLL 532
IG V G GS + +RQISGA +VH + T DR + I+G D A+ L+
Sbjct: 274 IGCVIGRRGSKIAEIRQISGA--LVHIAKGEGTHENGENEDRHITITGNKDSISVAKYLI 331
Query: 533 Q 533
+
Sbjct: 332 E 332
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 164/370 (44%), Gaps = 55/370 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDP-----------------ASFGVHSSVAVSHDFSQPPLTQ 404
R + S+ + R DP ++ + A+ H P LT+
Sbjct: 179 RPKPASTPVIFAGGQVR-ADPLAASTANLSLLLQPPPLPAYTIQGQYAIPH----PDLTK 233
Query: 405 GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
+ L + + P P T G L S +Q L GL++ +
Sbjct: 234 -LHQLAMQQT---PFPPLGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLDVSPPA--- 283
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP
Sbjct: 284 ----STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 339
Query: 525 TQAAQSLLQA 534
AQ L+ A
Sbjct: 340 ISLAQYLINA 349
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 157/358 (43%), Gaps = 53/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIFQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + + + ++ + A+ H D L H L +P
Sbjct: 179 RPKPACTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 222 FPPLGQTNPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 269
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 270 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 327
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
I+ ++ GA + V G +P ER +T++ + P++ + ++ V++ +G +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIFQCVKQICVVMLESPPKGAT 175
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITITGTPANISLA 321
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 322 QYLINARL 329
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 102/184 (55%), Gaps = 14/184 (7%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE--- 239
++ +R LC K+G++IGKGG I + L++++ + I + MP DER++T+ +S
Sbjct: 39 NEDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERIVTIYSSSEET 98
Query: 240 ---GPESRY-SPAQKAVVLVFSRLI----EGTSEKGLDFSSNKGLL--VNARLVVASNQV 289
G Y PAQ A+ +V R+I + + + N G + V R++V ++Q+
Sbjct: 99 NLFGETGEYVCPAQDALFMVHDRVIAEDLNNAAAEEEEGEDNFGEVQQVTVRMLVPADQI 158
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEN-DRVVQISGEFSKVKDAVYNVTGR 348
GC++GKGG +I +R T IRI D L ++ + D ++ I GE S V+ A+Y V R
Sbjct: 159 GCVIGKGGQVIQNIRSETCAQIRITKDDHLPPLALSIDELLLIHGEPSAVRKALYQVATR 218
Query: 349 LRDN 352
L +N
Sbjct: 219 LHEN 222
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 18/182 (9%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II+ ++ E+ A I V ++ E D+ +I ++A E E
Sbjct: 277 KEFSLRLVCPTANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGDDCIIFISAKEFFED 336
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ SP A + + R + T ++ D ++ RL+V +Q+GCL+GKGG IISEM
Sbjct: 337 Q-SPTMNAALRLQPRCSDKTEKESGDS------VITTRLLVGRSQIGCLMGKGGAIISEM 389
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRV----------VQISGEFSKVKDAVYNVTGRLRDN 352
R T +IRIIS D L K E+D + VQI+G +A+ V RL+ N
Sbjct: 390 RNQTRANIRIISEDNLPKVAVEDDEMVQVNVYNFNSVQITGSLEVASNALLQVILRLKAN 449
Query: 353 HF 354
F
Sbjct: 450 LF 451
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 155/349 (44%), Gaps = 60/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS--------- 219
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H +SH G G A T+ E+ +P ++IG +
Sbjct: 220 ---------HFP------------MSHGNTGFSAG---LDASAQTTSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
>gi|291409711|ref|XP_002721142.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
Length = 362
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/362 (27%), Positives = 166/362 (45%), Gaps = 40/362 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ LV RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPLVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V ++ + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKHICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFGVHS--SVAVSHDFSQPPL----TQG-----MDHLGL 411
+SS + YS D ASF H+ S+ ++ D PPL QG L
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASF-PHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTK 241
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
H L S T + SS +G+ GL A T+
Sbjct: 242 LHQLAVQQSHFPMTHGNTGFSGIESSSPEVKGYWAGL--------------DASAQTTSH 287
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +P ++IG + G G+ + + Q+SGA + + GSTDR V I+G+ AQ L
Sbjct: 288 ELTIPNDLIGCIIGCQGAKINEICQMSGALIKIANTVEGSTDRQVTITGSAASISLAQYL 347
Query: 532 LQ 533
+
Sbjct: 348 IN 349
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 47/366 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT----GRLRDNHFSGTLNTA 361
TG +++ D L + +R + I+G + + V + L + G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL----TQG-----MDH 408
R + +SS + YS D ASF S+ ++ D PPL QG
Sbjct: 183 RPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPD 242
Query: 409 LGLSHSLDCPSS--PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
L H L S P +G+ S +V W GL+ A
Sbjct: 243 LTKLHQLAMQQSHFPMTHGNTGFSGIE-SSSPEVKGYW---------GLD-------ASA 285
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T+ E+ +P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+
Sbjct: 286 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 345
Query: 527 AAQSLL 532
AQ L+
Sbjct: 346 LAQYLI 351
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 280 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTD 332
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 333 RQVTITGSAASISLAQYLINVRL 355
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 157/351 (44%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ H L SP
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-------LHQLAMQQSP-- 220
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
G ++ G +GG++ A ++ E+ +P ++IG +
Sbjct: 221 ---------FPMGPNNPG---------FQGGMD-------ASAQTSSHEMTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G GS + +RQ+SGA++ + P GS DR V I+G+ A+ L+ A
Sbjct: 256 IGRQGSKINEIRQMSGAQIKIANPVEGSADRQVTITGSAASISLAEYLINA 306
>gi|413944062|gb|AFW76711.1| hypothetical protein ZEAMMB73_249479 [Zea mays]
Length = 426
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 150/313 (47%), Gaps = 49/313 (15%)
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
V + GP+ PAQ+AV+ + + ++ D + ++ RL+V ++++ C G
Sbjct: 150 VDSRRGPDHELFPAQEAVLHIQTHIV--------DLGPDMDNIITTRLLVPASEIACFDG 201
Query: 295 KGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ G++ S++++ T +++I+ + L C E+D ++QI GE ++A+ VT +LR
Sbjct: 202 REGSL-SDIQRQTSANVQILPREDLPSCALESDELIQIVGEIKAARNALIQVTTKLR--- 257
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMD-HL 409
S L Y + DP G +H +++ + P QG D +
Sbjct: 258 --------------SFL-----YREMPDPIQVGNINLHGAISPVAGSPRGPY-QGNDIPM 297
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI--VT 467
G H +Q T H + S G + S+ + + + A+ VT
Sbjct: 298 GAYHQ----------ASQLATSWHSKDSGGSASGSFEQGSNINDDIRQSATKRFAVPLVT 347
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
+T+EI++P + + S+ GS L ++ +ISGA V + E R ++V ISGTP++
Sbjct: 348 RSTLEIVIPNSAVASLTMRAGSKLAQISEISGAAVTLAEDRSDILQKVVRISGTPEQASK 407
Query: 528 AQSLLQAFILTGP 540
A++LLQ FIL+ P
Sbjct: 408 AENLLQGFILSIP 420
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 106/190 (55%), Gaps = 20/190 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
++ +R LC K+G++IG+GG I + L+SE+ + I + M +ER++T+ ++
Sbjct: 47 NEDTVYRYLCPLRKIGSIIGRGGEIAKQLRSESKSNIRISEAMAGFEERIVTIYSNSEES 106
Query: 243 SRYS-------PAQKAVVLVFSRLI------------EGTSEKGLDFSSNKGLLVNARLV 283
+ + PAQ A+ +V R+I E E+ +F +K +V R++
Sbjct: 107 NLFGDSGEFVCPAQDALFMVHDRIIAEDLNNSNNNNEEEDDEEEEEFGESKEQVVTVRML 166
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAV 342
V ++Q+GC++GKGG +I +R TG IRI+ D+ L ++ +D ++ I GE + V+ A+
Sbjct: 167 VPADQIGCVIGKGGQVIQSIRSETGAQIRILKDEHLPPLALSSDELLLIIGEPAVVRKAL 226
Query: 343 YNVTGRLRDN 352
Y V RL +N
Sbjct: 227 YQVATRLHEN 236
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R++C +G VIGKGG II+ ++ E+ A I V ++ E D+ +I ++A E
Sbjct: 295 KEFSLRLVCPIGNIGGVIGKGGGIIKQIRQESRASIKVDSSAAEGDDCIIFISAKE---- 350
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ Q A + RL SEK S + ++ RL+V +Q+GCL+GKGG IISEM
Sbjct: 351 -FFEDQSATLTAALRLQPRCSEKTERDSGDS--VITTRLLVPRSQIGCLMGKGGAIISEM 407
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R VT SIRI++ D L K SE+D +VQI+G +A+ +V RL+ N F
Sbjct: 408 RNVTRASIRILAEDNLPKVASEDDEMVQITGSHDVASNALLHVVLRLKANLF 459
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+++Q V+ R+L D++G VIGKGG +I++++SE GA I +
Sbjct: 156 SKEQVVTVRMLVPADQIGCVIGKGGQVIQSIRSETGAQIRI 196
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 149/349 (42%), Gaps = 55/349 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDTI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKP 184
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 185 ASTPVI-------FSGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 227
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
QT GL+ A +T E+ +P ++IG + G
Sbjct: 228 GQTTPAFP--------------------GLD-------AAPPASTHELTIPNDLIGCIIG 260
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 261 RQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 309
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPY 180
Query: 246 SPAQKAVVLVFS----RLIEGT------------------------------SEKGLDFS 271
P + ++FS I+G + GLD +
Sbjct: 181 RPKPASTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQTTPAFPGLDAA 240
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 241 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQITI 293
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 294 TGTPANISLAQYLINARL 311
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 68/359 (18%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTAHSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQP--------PLTQGMDHLGLSHSL 415
+ S P F + AV H QP P + L +
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDSSSAAISPQLSKLHQLAMQQG- 228
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P Q TG+ +Q SH E+ +
Sbjct: 229 ---PFPMATCNQGFTGMD---------ASAQACSH---------------------EMTI 255
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
P ++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+P A+ L++A
Sbjct: 256 PNDLIGCIIGRQGAKISEIRQMSGAQIKIANPVDGSTDRQVTITGSPASIGLAEYLIKA 314
>gi|413953982|gb|AFW86631.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 581
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 98/167 (58%), Gaps = 10/167 (5%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ FRILC NDKV ++ I+ LQ++ G + + + DER++ +T+ EGP+
Sbjct: 341 DIIFRILCPNDKVDNLVATNDGILEMLQADVGVDVRLSDIIAGSDERVVIITSREGPDHE 400
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PAQ+AV+ + + ++ D +K ++ RL+V S+++ C G+ G+ +S+++
Sbjct: 401 LFPAQEAVLHIQTHIV--------DLGPDKDNIITTRLLVPSSEIACFDGREGS-LSDIQ 451
Query: 305 KVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ T +++I+ + L C E+D ++QI GE S ++A+ VT +LR
Sbjct: 452 RQTSANVQILPKEDLPLCALESDELIQIVGEISAARNALIQVTTKLR 498
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 28/200 (14%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGPE 242
FRILC K G + ++ ++GA ++V R+I ++G
Sbjct: 91 FRILCPECKA---YGFPPGFVAKVRDDSGALVTVHPPFAGDYVRVIETVDGARREADGRP 147
Query: 243 SRYSPAQKAVVLVFSRLIE----------GTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
+SPAQ+A+++V R++E +G D S ++G RL+V VGCL
Sbjct: 148 PMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKD-SRDRGK-TTTRLIVPKMHVGCL 205
Query: 293 LGKGGTIISEMRKVTGTSIRII-SDQ-LLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
LGKGG II +MR T T IRI+ DQ +C+S ++ VVQ+ G+ + VK AV +T RL+
Sbjct: 206 LGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGNCVKKAVAIITDRLK 265
Query: 351 DN------HFSGTLNTARTR 364
++ F G +N+ R
Sbjct: 266 ESLHRDRGPFRGRMNSPEPR 285
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 163/370 (44%), Gaps = 55/370 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDP-----------------ASFGVHSSVAVSHDFSQPPLTQ 404
R + S+ + R DP ++ + A+ H P LT+
Sbjct: 179 RPKPASTPVIFAGGQVR-ADPLAASTANLSLLLQPPPLPAYTIQGQYAIPH----PDLTK 233
Query: 405 GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
+ L + + P P T G L S +Q L GL+ A
Sbjct: 234 -LHQLAMQQT---PFPPLGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------A 279
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP
Sbjct: 280 SPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 339
Query: 525 TQAAQSLLQA 534
AQ L+ A
Sbjct: 340 ISLAQYLINA 349
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|302814684|ref|XP_002989025.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
gi|300143126|gb|EFJ09819.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
Length = 1034
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 158/337 (46%), Gaps = 40/337 (11%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
K+G VIGK G+ I+ L+ E GA I + M ++R + +++ S S A+ A++ V
Sbjct: 512 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGVSDRSCAELALLEV 571
Query: 256 FSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+ L+ +G + ++G RL++A +Q G L+GK G I +R + S+R
Sbjct: 572 VTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSASVR 631
Query: 313 II-SDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSV 369
++ SDQL C E DR+VQISGE + V+ A+ V LRDN T+ T T+
Sbjct: 632 VLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTNPEAKTAYF 691
Query: 370 L-TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT 428
L + + ++ P HSSVA + S PSS L+ Q
Sbjct: 692 LGIDGNTGQQVLLP-----HSSVAAVYGHS-------------------PSSMALYGLQP 727
Query: 429 VTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK-SAIVTNTTVEIIVPENVIGSVYGEN 487
G ++ G+ L ++ ++ + E+ VP +V+G + G+
Sbjct: 728 --------HPLAGPAYAGGVLAQAPPLYANPAARLPPMLPKVSAEMSVPSSVMGGLIGKG 779
Query: 488 GSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
G ++ +R +SGA + V+ + S +R ++ GT ++
Sbjct: 780 GFHISHMRSVSGATIKVNGSKESSVERTILFEGTQEQ 816
>gi|410899813|ref|XP_003963391.1| PREDICTED: poly(rC)-binding protein 4-like [Takifugu rubripes]
Length = 447
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 168/360 (46%), Gaps = 40/360 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A +++ C ER+IT+T S R
Sbjct: 16 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITGSTDCVFR- 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A ++ +L E + + + + V RLV+ ++Q G L+GKGG I E+R+
Sbjct: 73 -----AFTMITHKLEEDLAALVANGTISTKPPVTLRLVIPASQCGSLIGKGGAKIKEIRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNTARTR 364
TG I++ D L + +R V ISG V V + + ++ G T+ +
Sbjct: 128 STGAQIQVAGDLL---PNSTERGVTISGNQDSVIQCVKLICTVILESPPKGATIPYRPSP 184
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSH---DFSQPPLTQGMDHLGLSHSLDCPSSP 421
S ++VL ++L D + F H +V+ D Q Q + G+ HS +
Sbjct: 185 SPAAVLIAG---NQLFDASEFATHPMYSVAQGGLDLQQAYTLQ--NQYGIPHS-ELAKLH 238
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+L Q + + S+ + G + T+ E+++P ++IG
Sbjct: 239 QLSMQQGLNPIAQPASTVIPAGMDSN-------------------SQTSQELLIPNDLIG 279
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
S+ G G+ + +RQ+SGA++ + G++DR V I+GTP AQ L+ + + T S
Sbjct: 280 SIIGRQGTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYLITSCLETAKS 339
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/370 (25%), Positives = 163/370 (44%), Gaps = 55/370 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDP-----------------ASFGVHSSVAVSHDFSQPPLTQ 404
R + S+ + R DP ++ + A+ H P LT+
Sbjct: 211 RPKPASTPVIFAGGQVR-ADPLAASTANLSLLLQPPPLPAYTIQGQYAIPH----PELTK 265
Query: 405 GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
+ L + + P P T G L S +Q L GL+ A
Sbjct: 266 -LHQLAMQQT---PFPPLGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------A 311
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP
Sbjct: 312 SPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPAN 371
Query: 525 TQAAQSLLQA 534
AQ L+ A
Sbjct: 372 ISLAQYLINA 381
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 68/380 (17%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G +I+ + E A I + P ER + V+ E PES
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL---LVNARLVVASNQVGCLLGKGGTIIS 301
P+ ++ V R+++ GLD +++ V+ RL+V ++Q G L+GK G +
Sbjct: 246 LPPSMDGLLRVHMRIVD-----GLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300
Query: 302 EMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSG 356
+++ + +R++ + L + ++DRVV++ GE + V A+ + LR D
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIP 360
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDP---------ASFG-----------VHSSVAVSHD 396
+ T + P+ P +G H S +
Sbjct: 361 FFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPE 420
Query: 397 FSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
QPP+ + H G+S + + VH+
Sbjct: 421 MRQPPMEK-QPHQGIS----------AYGREPPMNVHV---------------------- 447
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
S + + T ++ +P + +V G +GSN+ R++SGA V + E R + V
Sbjct: 448 --SSAPPMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTV 505
Query: 517 VISGTPDETQAAQSLLQAFI 536
+SGT + Q A L+Q F+
Sbjct: 506 EVSGTGSQVQTAVQLIQNFM 525
>gi|148223740|ref|NP_001083021.1| poly(rC)-binding protein 3 [Danio rerio]
gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Danio rerio]
Length = 350
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 50/358 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A I+V C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSEG--NCPERIVTIT---GPTD-- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 69 -----AIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIK 123
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
EMR+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 124 EMRESTGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGA---- 176
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
T PY R K + + S V D P T + L L H
Sbjct: 177 -----------TIPY-RPKPATAPVIFSGGQVRADTLTAPATANLSLL-LQH-------- 215
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS-----AIVTNTTVEIIVP 476
+ A T+ G + D+ + Q LG + + A +T E+ +P
Sbjct: 216 QPLPAYTIQGQYAIPHPDLTK-LHQLAMQQTPFTSLGQTTPAFPGVDASSQASTHELTIP 274
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS+DR + I+GTP AQ L+ A
Sbjct: 275 NDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISLAQYLINA 332
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
G+D SS L + ++ +GC++G+ GT I+E+R+++G I+I + +D
Sbjct: 259 GVDASSQAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSD 311
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRD 351
R + I+G + + A Y + R RD
Sbjct: 312 RQITITGTPANISLAQYLINARFRD 336
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT--PEA 156
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 156/351 (44%), Gaps = 54/351 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTTSI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISTSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
G +++ D L + +R + ++G + + V + + ++ G R +
Sbjct: 126 SAGAQVQVAGDMLP---NSTERAITVAGTPQSIIECVKQICIVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP +++G L H L SP
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDVSEGPSLTKL-HQLAMQQSPFP 228
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++H G + G A + E+ +P ++IG +
Sbjct: 229 ------------------------IAHSNQGFQAG---MDASAQTGSHELTIPNDLIGCI 261
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+ A+ L+ A
Sbjct: 262 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 312
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 153 APSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRA 210
P++SI ++ LE D ++ T + V+ R++ + G++IGKGG I+
Sbjct: 63 GPTTSIFKAFSMIIEKLEEDISTSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTAS 238
++ AGA + V G +P ER ITV +
Sbjct: 123 IRESAGAQVQVAGDMLPNSTERAITVAGT 151
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 156/352 (44%), Gaps = 62/352 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT-GRLRDNHFSGTLNTARTR 364
TG +++ D L + +R + I+G + + V + L + G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLEQSPPKGVTIPYRPK 182
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
+ S P F + AV H QP LT+ + L + S P +P
Sbjct: 183 PSGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-LHQLAMQQS-PFPIAPN 227
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
Q TG+ +Q SH E+ +P ++IG
Sbjct: 228 ---NQGFTGMD---------ASAQTSSH---------------------EMTIPNDLIGC 254
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G GS + +RQ+SGA++ + P GS DR V I+G+P A+ L+ A
Sbjct: 255 IIGRQGSKINEIRQMSGAQIKIANPVDGSADRQVTITGSPASISLAEYLINA 306
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 67/226 (29%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTASE 239
T + V+ RI+ + G++IGKGG I+ ++ GA + V G +P ER IT+ +
Sbjct: 93 TSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGT- 151
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLD-------------FSSNKGLLVNAR----- 281
P+S ++ V+ ++E + KG+ F+ + V +
Sbjct: 152 -PQSIIECVKQICVV----MLEQSPPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQ 206
Query: 282 ---------------LVVASNQVG-----------------------CLLGKGGTIISEM 303
+A N G C++G+ G+ I+E+
Sbjct: 207 PDLTKLHQLAMQQSPFPIAPNNQGFTGMDASAQTSSHEMTIPNDLIGCIIGRQGSKINEI 266
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
R+++G I+I + DR V I+G + + A Y + RL
Sbjct: 267 RQMSGAQIKIAN----PVDGSADRQVTITGSPASISLAEYLINARL 308
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 158/380 (41%), Gaps = 68/380 (17%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G +I+ + E A I + P ER + V+ E PES
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL---LVNARLVVASNQVGCLLGKGGTIIS 301
P+ ++ V R+++ GLD +++ V+ RL+V ++Q G L+GK G +
Sbjct: 246 LPPSMDGLLRVHMRIVD-----GLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300
Query: 302 EMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSG 356
+++ + +R++ + L + ++DRVV++ GE + V A+ + LR D
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIP 360
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDP---------ASFG-----------VHSSVAVSHD 396
+ T + P+ P +G H S +
Sbjct: 361 FFENQMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYYPPPE 420
Query: 397 FSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
QPP+ + H G+S + + VH+
Sbjct: 421 MRQPPMEK-QPHQGIS----------AYGREPPMNVHV---------------------- 447
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
S + + T ++ +P + +V G +GSN+ R++SGA V + E R + V
Sbjct: 448 --SSAPPMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTV 505
Query: 517 VISGTPDETQAAQSLLQAFI 536
+SGT + Q A L+Q F+
Sbjct: 506 EVSGTGSQVQTAVQLIQNFM 525
>gi|432865686|ref|XP_004070563.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 467
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 175/370 (47%), Gaps = 51/370 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A +++ C ER+IT+T S +S +
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITGST--DSVF 82
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+A ++ +L E + + + + V RLV+ ++Q G L+GKGG I E+R+
Sbjct: 83 ----RAFTMITYKLEEDLTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEIRE 138
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG I++ D L + +R V ISG V V + + ++ G
Sbjct: 139 STGAQIQVAGDLL---PNSTERGVTISGNQDSVIQCVKLICTVILESPPKGA-------- 187
Query: 366 TSSVLTETSPYSRLKDPASFGVHSS-VAVSHDFSQPPL---TQG----------MDHLGL 411
T PY PA+ + + V + DF+ PL TQG + G+
Sbjct: 188 -------TIPYRPTPSPAALLIAGNQVFEASDFAPHPLYSVTQGGLDLQQAYALQNQYGI 240
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
HS + +L Q ++ + S+ + + L H L SG S + T+
Sbjct: 241 PHS-ELAKLHQLSVQQGLSPIAQPASTIM---PGKLLLHF-----LPSGMDS--TSQTSQ 289
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+++P ++IGS+ G G+ + +RQ+SGA++ + G++DR V I+GTP AQ L
Sbjct: 290 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYL 349
Query: 532 LQAFILTGPS 541
+ + + T S
Sbjct: 350 ITSCLETAKS 359
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 49/352 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HF 225
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P +G+ SS +G+ GL A T+ E+ +P ++I
Sbjct: 226 PMTHGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLI 269
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 270 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 321
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 155/349 (44%), Gaps = 60/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS--------- 219
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H ++H G G A T+ E+ +P ++IG +
Sbjct: 220 ---------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 57/356 (16%)
Query: 199 AVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258
A +G+ GT ++ ++ E+GA I++ C ER+IT+T GP + KA ++ +
Sbjct: 109 ASLGRKGTSVKRIREESGARINISEG--NCPERIITLT---GPTNAIF---KAFAMIIDK 160
Query: 259 LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
L E + + ++ V RLVV + Q G L+GKGG I E+R+ TG +++ D L
Sbjct: 161 LEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 220
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYS- 377
+ +R + I+G V + V + + + TL+ + ++ + P S
Sbjct: 221 P---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGRVMTIPYQPMPASS 272
Query: 378 ---------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT 428
R D A + H++ HD PPL ++S+ T
Sbjct: 273 PVICAGGQDRCSDAAGY-PHAT----HDLEGPPLD--------AYSIQ--------GQHT 311
Query: 429 VTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV----------TNTTVEIIVPEN 478
++ + L + V R S H G G S S V T TT E+ +P N
Sbjct: 312 ISPLDLAKLNQVARQQSHFAMLHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNN 371
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+IG + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 372 LIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 427
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 92/358 (25%), Positives = 155/358 (43%), Gaps = 51/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTIT---GPTD-- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 69 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 123
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
EMR+ TG +++ D L + +R V ISG + V + L ++ G
Sbjct: 124 EMRESTGAQVQVAGDMLP---NSTERAVTISGAPEAIIQCVKQICVVLLESPPKGATIPY 180
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG---MDHLGLS--HSLD 416
R + S+ + + R + + S+ + H QG + H LS H L
Sbjct: 181 RPKPASTPVIFSGGQVRADPLGASTANLSLLLQHQPLPAYTIQGQYAIPHPDLSKLHQLA 240
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
+P QT G S S H E+ +P
Sbjct: 241 MQQTPFTPLGQTTPAFP-------GLDASNQASTH--------------------ELTIP 273
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 274 NDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 331
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ L + ++ +GC++G+ GT I+E+R+++G I+I + ++
Sbjct: 258 GLDASNQAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSE 310
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRD 351
R + I+G + + A Y + R RD
Sbjct: 311 RQITITGTPANISLAQYLINARFRD 335
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGA--PEA 156
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 95/166 (57%), Gaps = 3/166 (1%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG +IG+ G ++ + E + I + +P ER++ V+A E PE+ SP
Sbjct: 12 FRLIVPVQKVGGIIGRKGEFVKRMCEETRSRIKILEGVPGTAERIVMVSAREDPEAAISP 71
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFS-SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A + ++ V R+IEG + D + G V++RL+VA+ Q G L+G+ G I ++
Sbjct: 72 AMEGLLRVHRRVIEGAEPESADAEIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSIQDS 131
Query: 307 TGTSIRII--SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+G ++R++ +++L C +DRVV+++GE V+ A V LR
Sbjct: 132 SGATVRVLPAAEELPLCALADDRVVEVTGEPRNVQRATELVVAHLR 177
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
++T T + +P + ++ G G+N+ +R+ SGA + + E R + V I G+ +
Sbjct: 276 VITQVTQHMQIPLSYADAIIGGAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQ 335
Query: 525 TQAAQSLLQ 533
Q AQ L+Q
Sbjct: 336 VQTAQQLIQ 344
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 47/343 (13%)
Query: 202 GKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
GK G ++ ++ E+GA I++ C ER+IT+ GP + KA ++ +L E
Sbjct: 22 GKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMIIDKLEE 73
Query: 262 GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC 321
S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++ D L
Sbjct: 74 DISSSMTNSTAASKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP-- 131
Query: 322 ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSP---YSR 378
+ +R + I+G + + V + + ++ G R + +SS + YS
Sbjct: 132 -NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYST 190
Query: 379 LKDPASFG-VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGS 437
D ASF S+ ++ D PPL A T+ G +
Sbjct: 191 GSDSASFPHTTPSMCLNPDLEGPPL----------------------EAYTIQGQYAIPQ 228
Query: 438 SDVGR----GWSQG---LSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
D+ + Q ++H G G A T+ E+ +P ++IG + G G+
Sbjct: 229 PDLTKLHQLAMQQSHFPMTHGNTGFSAG---LDASAQTTSHELTIPNDLIGCIIGRQGAK 285
Query: 491 LLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+ +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 286 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 328
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 55/349 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDTI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKP 184
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H D L H L +P
Sbjct: 185 ASTPVI-------FSGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFTPL 227
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
Q G S S H E+ +P ++IG + G
Sbjct: 228 GQATPAFP-------GLDASPPASTH--------------------ELTIPNDLIGCIIG 260
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 261 RQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 309
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPY 180
Query: 246 SPAQKAVVLVFS----RLIEGT------------------------------SEKGLDFS 271
P + ++FS I+G + GLD S
Sbjct: 181 RPKPASTPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQATPAFPGLDAS 240
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 241 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQITI 293
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 294 TGTPANISLAQYLINARL 311
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 96.3 bits (238), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 86/360 (23%), Positives = 163/360 (45%), Gaps = 40/360 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ R++ + G++IGK G ++ + ++GA I++ + C ER++TVT +
Sbjct: 2 VTLRMIMQGKEAGSIIGKKGDNVKKFREDSGAKINISDS--SCPERIVTVTGTT------ 53
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
+ F+ + + E ++ ++ L V RL+V ++Q G L+GKGG I E
Sbjct: 54 ----DQIFKAFTMICKKFEEDIVNTHNSTTLPKPPVTLRLIVPASQCGSLIGKGGAKIKE 109
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R++TG SI++ S+ L + +R V +SG+ + +YN+ + ++ G R
Sbjct: 110 IRELTGASIQVASEMLP---NSTERAVTVSGQADAITQCIYNICCVMLESPPKGATIPYR 166
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS-HSLDCPSSP 421
+ P L P+S G + PP +S H + P P
Sbjct: 167 PK-------PCVPPVML--PSSCGGQAFSIQGQQILLPPSHPNATQPDVSPHCV--PLPP 215
Query: 422 KLWTA-------QTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
+ + ++ + +R DV G + ++ A ++ T E+
Sbjct: 216 PCFISLRARLQTHSLICIIIR---DVYPGMNAAMAAGIPQFAPRQAGPGANMSAQTHEMT 272
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+P ++IG + G G+ + +RQ+SGA + + GS+DR V I G+ + AAQ ++ A
Sbjct: 273 IPNDLIGCIIGRGGAKINEIRQLSGATIKIANADEGSSDRKVTIMGSLETIHAAQYMINA 332
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKD 340
+ + ++ +GC++G+GG I+E+R+++G +I+I +D+ +DR V I G +
Sbjct: 271 MTIPNDLIGCIIGRGGAKINEIRQLSGATIKIANADE-----GSSDRKVTIMGSLETIHA 325
Query: 341 AVYNVTGR 348
A Y + R
Sbjct: 326 AQYMINAR 333
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 59/349 (16%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS--------- 219
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H S G+S G+ A T+ E+ +P ++IG +
Sbjct: 220 ---------HFPMSHSGNTGFSGGI--------------DASAQATSHELTIPNDLIGCI 256
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 257 IGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 305
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 58/235 (24%)
Query: 169 LESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATM 225
LE D +++ T + V+ R++ + G++IGKGG I+ ++ GA + V G +
Sbjct: 79 LEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 138
Query: 226 PECDERLITVTA--------------------SEGPESRYSPAQKAVVLVFS-------- 257
P ER IT+ +G Y P + ++F+
Sbjct: 139 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQ 198
Query: 258 --------------RLIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLG 294
+L S + S N G + L + ++ +GC++G
Sbjct: 199 GQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQATSHELTIPNDLIGCIIG 258
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ G I+E+R+++G I+I + NDR V I+G + + A Y + RL
Sbjct: 259 RQGAKINEIRQMSGAQIKIAN----PVEGSNDRQVTITGSTASISLAQYLINVRL 309
>gi|147817258|emb|CAN62067.1| hypothetical protein VITISV_030085 [Vitis vinifera]
Length = 288
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 36/189 (19%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA- 237
A + +V FRILC K G VIGKGG IIR + + GA I + ++ CDER+I + A
Sbjct: 93 AGAAKPQVLFRILCPATKTGGVIGKGGAIIRQFREDTGAKIRIDDSVLGCDERVILIVAD 152
Query: 238 ----------------SEGPES----------------RYSPAQKAVVLVFSRL--IEGT 263
++G ES SPAQ+A+V VF R+ ++
Sbjct: 153 AVKSKREASAICGAEANDGEESANLRNSSPNPVAVDDDESSPAQQALVRVFERILKVDEE 212
Query: 264 SEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCI 322
E+ + V RL+ SNQVGC+LG+GG I+ ++R+ +G IR++ D + C
Sbjct: 213 REEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACA 272
Query: 323 SENDRVVQI 331
S D ++Q+
Sbjct: 273 SPGDELIQV 281
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 154/351 (43%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTTSI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
G +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 SAGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ H L SP
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-------LHQLAMQQSPFP 222
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++H G + G A + E+ +P ++IG +
Sbjct: 223 ------------------------IAHSNQGFQAG---MDASAQTGSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+ A+ L+ A
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 306
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 63/253 (24%)
Query: 153 APSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRA 210
P++SI ++ LE D ++ T + V+ R++ + G++IGKGG I+
Sbjct: 63 GPTTSIFKAFSMIIEKLEEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRYSPAQ 249
++ AGA + V G +P ER IT+ + +G Y P
Sbjct: 123 IRESAGAQVQVAGDMLPNSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 250 KAVVLVFS----RLIEGTS-----------------------------EKGLDFSSNKGL 276
++F+ ++G + G+D S+ G
Sbjct: 183 SGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAHSNQGFQAGMDASAQTG- 241
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
+ L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G +
Sbjct: 242 --SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSHA 295
Query: 337 KVKDAVYNVTGRL 349
+ A Y + RL
Sbjct: 296 SISLAEYLINARL 308
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/349 (25%), Positives = 156/349 (44%), Gaps = 60/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS--------- 219
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H ++H G G A T+ E+ +P ++IG +
Sbjct: 220 ---------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 63/253 (24%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMP-----------------ECDERLITVTASEGPES---RYSPAQ 249
++ GA + V G +P EC +++ V P+ Y P
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 250 KAVVLVFS----RLIEGTS-----------------------------EKGLDFSSNKGL 276
+ ++F+ I+G GLD S+
Sbjct: 183 SSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-- 240
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
+ L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G +
Sbjct: 241 -TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVTITGSAA 295
Query: 337 KVKDAVYNVTGRL 349
+ A Y + RL
Sbjct: 296 SISLAQYLINVRL 308
>gi|297742912|emb|CBI35779.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTAS 238
R Q+ S R++C +G VI KGG I ++ E+GA I V +T E D+ L+T+ A
Sbjct: 37 RHIQRIFSLRLVCPIRNIGGVIRKGGVFINQIRRESGAIIKVDSTSAAEADDCLVTILAK 96
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P + ++ + + D++ G RL+V+ NQ+GC++GKGG
Sbjct: 97 ERLHFPRGPQTSHCIFLYRMCM-----RLWDWNCPSGTF-TVRLLVSFNQIGCVIGKGGQ 150
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
II +R +G IRI+ D L C ++ ++QIS E S V+ +Y + RL DN
Sbjct: 151 IIQSIRSESGAQIRILKDDHLPSCSLSSNELIQISKEPSIVRKILYQIASRLHDN 205
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
Query: 92 ESGPQEILRRPLEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLT 151
ESG Q +R + P S S+E + I + + + +I LH + ++ +
Sbjct: 158 ESGAQ--IRILKDDHLPSCSLSSNELIQISKEPSIVRKILYQIASRLHDNPSRSQHLFVY 215
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
P I Y S+ + L S A + +E S ++C +G +IGKG II +
Sbjct: 216 VVP---IGYSSSGSLMGLTSG--APIMDEASSKEFSLCLVCPIGNIGGMIGKGDVIINQI 270
Query: 212 QSEAGAFISVGAT-MPECDERLITVTASE 239
+ E GA I V +T + E ++ L+T++A E
Sbjct: 271 RQEFGATIKVDSTSVVEANDCLVTISAKE 299
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 154/351 (43%), Gaps = 60/351 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTTSI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISNSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
G +++ D L + +R + ++G + + V + + ++ G R +
Sbjct: 126 SAGAQVQVAGDMLP---NSTERAITVAGTPQSIIECVKQICIVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAV--SHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ S P F + AV H QP LT+ H L SP
Sbjct: 183 SGS-------------PVIFAGGQAYAVQGQHAIPQPDLTK-------LHQLAMQQSPFP 222
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
++H G + G A + E+ +P ++IG +
Sbjct: 223 ------------------------IAHSNQGFQAG---MDASAQTGSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + P GSTDR V I+G+ A+ L+ A
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 306
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 63/253 (24%)
Query: 153 APSSSISYVSAVRPLSLESD--RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRA 210
P++SI ++ LE D T T + V+ R++ + G++IGKGG I+
Sbjct: 63 GPTTSIFKAFSMIIEKLEEDISNSMTNSTATSKPPVTMRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRYSPAQ 249
++ AGA + V G +P ER ITV + +G Y P
Sbjct: 123 IRESAGAQVQVAGDMLPNSTERAITVAGTPQSIIECVKQICIVMLESPPKGVTIPYRPKP 182
Query: 250 KAVVLVFS----RLIEGTS-----------------------------EKGLDFSSNKGL 276
++F+ ++G + G+D S+ G
Sbjct: 183 SGSPVIFAGGQAYAVQGQHAIPQPDLTKLHQLAMQQSPFPIAHSNQGFQAGMDASAQTG- 241
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
+ L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G +
Sbjct: 242 --SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSHA 295
Query: 337 KVKDAVYNVTGRL 349
+ A Y + RL
Sbjct: 296 SISLAEYLINARL 308
>gi|495128|emb|CAA53546.1| mCBP [Mus musculus]
Length = 331
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 160/349 (45%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S P
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFPMT 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+G+ SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 225 HGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIGCI 268
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 269 IRRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 95.9 bits (237), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 96/354 (27%), Positives = 160/354 (45%), Gaps = 63/354 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS------ 223
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
H ++H G S S A T TT E+ +P N+I
Sbjct: 224 ------------HFP------------MTHGNTGF---SASLDA-STQTTHELTIPNNLI 255
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+N+ +RQ+SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 256 GCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 309
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITV--------------------TASEGPESR----Y 245
++ GA + V G +P ER IT+ T S+ P Y
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 246 SPAQKAVVLVFS----RLIEGT-------------------------SEKGLDFSSNKGL 276
P + ++F+ I+G G S +
Sbjct: 183 RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSASLDAST 242
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
L + +N +GC++G+ G I+E+R+++G I+I + + R V I+G +
Sbjct: 243 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP----VEGSSGRQVTITGSAA 298
Query: 337 KVKDAVYNVTGRLRDNHFSG 356
+ A Y + RL G
Sbjct: 299 SISLAQYLINARLSSEKGMG 318
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 162/352 (46%), Gaps = 49/352 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEVFSSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HF 225
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P +G+ SS +G+ GL A T+ E+ +P ++I
Sbjct: 226 PMTHGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLI 269
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 270 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 321
>gi|302803885|ref|XP_002983695.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
gi|300148532|gb|EFJ15191.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
Length = 1020
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 157/337 (46%), Gaps = 40/337 (11%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
K+G VIGK G+ I+ L+ E GA I + M ++R + +++ S + A+ A++ V
Sbjct: 513 KIGKVIGKKGSQIKKLRDETGAHIKIADPMNTTEDRAVLISSKNEGGSDRTCAELALLEV 572
Query: 256 FSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+ L+ +G + ++G RL++A +Q G L+GK G I +R + S+R
Sbjct: 573 VTILLKDGDGATPSAAIGPQHQGSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSASVR 632
Query: 313 II-SDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSV 369
++ SDQL C E DR+VQISGE + V+ A+ V LRDN T+ T T+
Sbjct: 633 VLPSDQLPLCSAACETDRLVQISGEVAAVQMAIELVAANLRDNPPKETVPTTPEAKTAYF 692
Query: 370 L-TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT 428
L + ++ P HSSVA + S PSS L+ Q
Sbjct: 693 LGIDGKTGQQVLLP-----HSSVAAVYGHS-------------------PSSMALYGLQP 728
Query: 429 VTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK-SAIVTNTTVEIIVPENVIGSVYGEN 487
G ++ G+ L ++ ++ + E+ VP +V+G + G+
Sbjct: 729 --------HPLAGPAYAGGVLAQAPPLYANPAARLPPMLPKVSAEMSVPSSVMGGLIGKG 780
Query: 488 GSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
G ++ +R +SGA + V+ + S +R ++ GT ++
Sbjct: 781 GFHISHMRSVSGATIKVNGSKESSVERTILFEGTQEQ 817
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 31/356 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ L E A + + ER++ V+ E P P
Sbjct: 52 FRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGATERIVLVSGKEDPGLELPP 111
Query: 248 AQKAVVLVFSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A A++ VF R+I +G +E G ++ G+ ARL+V Q L+GK G I ++
Sbjct: 112 AMDALMRVFKRVIGITDGAAE-GTQAAATPGVCA-ARLLVPGAQAINLIGKQGATIKAIQ 169
Query: 305 KVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
+ TG +IR+IS D+ + +++++R+++I G+ KV A+ V+ LR ++
Sbjct: 170 ESTGATIRVISVDERERPFYVTDDERIIEIQGDTEKVLKALQAVSNHLRKFLVDHSVLPL 229
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS---HSLDCP 418
++ ++V + R D S H S+ S +QPP +D L SL
Sbjct: 230 FEKTNTTVSQD-----RNGDGWSDMSHPSIG-SAQVNQPPSV--VDEYILPVKRESLYLE 281
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
P + +H G S GR LS + G+G ++T T + +P
Sbjct: 282 REPLV-----DHNIHRSGVSLYGR--DPALSTLRPSGIHGAGP---LLTQITQTMQIPLT 331
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQ 533
+ G G+N+ +R SGA V + E LGS D I V I GT + QAAQ L+Q
Sbjct: 332 YAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQAAQQLIQ 386
>gi|357501551|ref|XP_003621064.1| Pectin acetylesterase [Medicago truncatula]
gi|355496079|gb|AES77282.1| Pectin acetylesterase [Medicago truncatula]
Length = 1330
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 80/117 (68%), Gaps = 4/117 (3%)
Query: 130 VSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFR 189
V ++ L +LHVD L QR +T PSSS S+ + V LS ++V++L+A+ QQE + R
Sbjct: 159 VPRKTLTNLHVDHLLQR---SSTLPSSSNSHATGVHSLSGGVNKVSSLEAKAHQQETALR 215
Query: 190 ILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
I+C ND++G IG+ G +IR QSE G ISVG ++ EC++RLIT TASE PE RYS
Sbjct: 216 IICCNDRIGGDIGRSGNMIRVPQSETGVTISVGPSVAECEDRLIT-TASESPELRYS 271
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 106/365 (29%), Positives = 167/365 (45%), Gaps = 48/365 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFI-----SVGATMPECDERLITVTASEGPE 242
FR++ KVG++IG+ G +I+ L E A + VGAT ER++ V+ E P
Sbjct: 49 FRMVVPVXKVGSIIGRKGELIKRLVEETKARVRVLDGPVGAT-----ERVVLVSGKEEPG 103
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL---LVNARLVVASNQVGCLLGKGGTI 299
PA A++ VF R + G ++ D ++ + ARL+V Q L+GK G
Sbjct: 104 LDLPPAMDALIRVFKR-VNGITDVAADSTTQTAAPPGVCAARLLVPGAQAINLIGKQGAS 162
Query: 300 ISEMRKVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
I +++ TG +IR+IS D+ + +++++R+V+I GE KV A+ V+ LR
Sbjct: 163 IKAIQEGTGATIRVISIDERERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRKFLVDH 222
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP-------LTQGMDHL 409
++ ++ + V + S + P H S+ VS +Q P L +HL
Sbjct: 223 SVLPLFEKTNAPVSQDRSADTWADMP-----HHSI-VSTQVNQQPEVRDEYILPMKREHL 276
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
L + +H G S GR LS + G S ++T
Sbjct: 277 YLEREPLVDHN-----------IHRSGVSLYGR--DPALSALRPS---GMHSVGPLLTQI 320
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAA 528
T + +P + G G+N+ +R SGA V + E LGS D I V I GT + QAA
Sbjct: 321 TQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQAA 379
Query: 529 QSLLQ 533
Q L+Q
Sbjct: 380 QQLIQ 384
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 155/349 (44%), Gaps = 47/349 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTTAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V R+VV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIEKLEEDISSSMTNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGTPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
+ S P F + AV QG H++ P S
Sbjct: 183 SGS-------------PVIFAGGQAYAV----------QG------QHAIPQPDSSSASI 213
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
+ +T +H +GG++ A ++ E+ +P ++IG + G
Sbjct: 214 SPQLTKLHQLAMQQSPFPMGPNNPGFQGGMD-------ASAQTSSHEMTIPNDLIGCIIG 266
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
GS + +RQ+SGA++ + P GS DR V I+G+ A+ L+ A
Sbjct: 267 RQGSKINEIRQMSGAQIKIANPVEGSADRQVTITGSAASISLAEYLINA 315
>gi|147790774|emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--- 235
+Q + +RILC + K+G VIGKGG I++AL+ E A I+V ++P DER+I +
Sbjct: 66 GNSQVADTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSA 125
Query: 236 --------TASEGPESR--------YSPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLV 278
++E PE + PAQ A++ V R+IE G +F N+ +V
Sbjct: 126 PTKNPKEHNSNEDPEREEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV 185
Query: 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSK 337
ARL+V +N VGCLLGK G +I +R TG +IR++ ++ L C +D +VQISG+ +
Sbjct: 186 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAV 245
Query: 338 VKDAVYNVTGRLRDN 352
K A+Y V+ L N
Sbjct: 246 AKKALYEVSTLLHQN 260
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 11/167 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E S +ILC K+G VIGKGG ++ LQ E GA I V + E +ER+I V++ E+
Sbjct: 341 EFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSSF---EAL 397
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
++P + + + +L TSE S+KG + RL+V S++VGC+LG+GG +I+EMR
Sbjct: 398 WNPRSQTIEAIL-QLQNKTSEY-----SDKGGMT-TRLLVPSSKVGCILGQGGHVINEMR 450
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ T IR+ S + KC S+++ +VQISG F KDA+ + RLR
Sbjct: 451 RRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLR 497
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N+++E +P N + SV G G N+ + +++GA+V + +P+ G ++ +V I G+ + A
Sbjct: 572 NSSMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTA 631
Query: 528 AQSLLQAFILT 538
AQS+LQAF+ +
Sbjct: 632 AQSILQAFMAS 642
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV----HEPR 508
GG E +++ +VT ++VP N++G + G+ G + RLR +GA + V H P
Sbjct: 172 GGTEFEDDNENTVVT---ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPT 228
Query: 509 LG-STDRIVVISGTP 522
S+D +V ISG P
Sbjct: 229 CAMSSDELVQISGKP 243
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
QT + G S S H E+ +P ++IG
Sbjct: 254 FPPLGQT-------NPAFPGLDASPPASTH--------------------ELTIPNDLIG 286
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 287 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 339
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 246 SPAQKAVVLVF----SRLIEG------------------------------TSEKGLDFS 271
P + ++F + I+G + GLD S
Sbjct: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 270
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 271 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITI 323
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 324 TGTPANISLAQYLINARL 341
>gi|294460692|gb|ADE75920.1| unknown [Picea sitchensis]
Length = 199
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 60/74 (81%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
V+ TTVE+ +P+N +GSV G+ GSN+ +R+ISGAKV +H+ G++DR++ ISGTP++T
Sbjct: 113 VSTTTVEVTIPKNAVGSVLGKRGSNIQHIREISGAKVKLHDSESGASDRVIEISGTPEQT 172
Query: 526 QAAQSLLQAFILTG 539
AA+SLLQAFI TG
Sbjct: 173 HAAKSLLQAFIATG 186
>gi|359488265|ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
gi|296087281|emb|CBI33655.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 110/195 (56%), Gaps = 21/195 (10%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
+Q + +RILC + K+G VIGKGG I++AL+ E A I+V ++P DER+I + ++
Sbjct: 38 GNSQVADTVYRILCPSKKIGGVIGKGGGIVKALREETQAKITVADSVPGSDERVIIIYSA 97
Query: 239 -----------EGPESR--------YSPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLV 278
E PE + PAQ A++ V R+IE G +F N+ +V
Sbjct: 98 PTKNPKEHDSNEDPEMEEEQDHMEPHCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVV 157
Query: 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSK 337
ARL+V +N VGCLLGK G +I +R TG +IR++ ++ L C +D +VQISG+ +
Sbjct: 158 TARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPTCAMSSDELVQISGKPAV 217
Query: 338 VKDAVYNVTGRLRDN 352
K A+Y V+ L N
Sbjct: 218 AKKALYEVSTLLHQN 232
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 11/167 (6%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E S +ILC K+G VIGKGG ++ LQ E GA I V + E +ER+I V++ E+
Sbjct: 313 EFSMKILCPAGKIGGVIGKGGFNVKQLQQETGASIHVEDALAESEERVIRVSSF---EAL 369
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
++P + + + +L TSE S+KG + RL+V S++VGC+LG+GG +I+EMR
Sbjct: 370 WNPRSQTIEAIL-QLQNKTSEY-----SDKGGMT-TRLLVPSSKVGCILGQGGHVINEMR 422
Query: 305 KVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ T IR+ S + KC S+++ +VQISG F KDA+ + RLR
Sbjct: 423 RRTQADIRVYSKEDKPKCASDDEELVQISGNFGVAKDALAEIASRLR 469
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N+++E +P N + SV G G N+ + +++GA+V + +P+ G ++ +V I G+ + A
Sbjct: 544 NSSMESKIPNNSVSSVIGMGGGNVANMSEMAGARVKLQDPQSGGSECVVEIRGSSEHLTA 603
Query: 528 AQSLLQAFILT 538
AQS+LQAF+ +
Sbjct: 604 AQSILQAFMAS 614
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV----HEPR 508
GG E +++ +VT ++VP N++G + G+ G + RLR +GA + V H P
Sbjct: 144 GGTEFEDDNENTVVT---ARLLVPNNMVGCLLGKRGDVIQRLRSETGANIRVLPAEHLPT 200
Query: 509 LG-STDRIVVISGTP 522
S+D +V ISG P
Sbjct: 201 CAMSSDELVQISGKP 215
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 156/349 (44%), Gaps = 61/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG DA+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISG----TPDAIIQC-----------------VKQ 161
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
V+ E ++ + A+ H P LT+ + L + + P +P T
Sbjct: 162 ICVVMLE-----------AYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFTPLGQT 202
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
G L S +Q L GL+ A +T E+ +P ++IG + G
Sbjct: 203 TPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIGCIIG 252
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 253 RQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 301
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 109/251 (43%), Gaps = 56/251 (22%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEG-- 262
I+ ++ GA + V G +P ER +T++ + P++ ++ VV++ + I+G
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQCVKQICVVMLEAYTIQGQY 176
Query: 263 --------------------------------------TSEKGLDF-SSNKGLLVNA--- 280
+SE+ + + GL +
Sbjct: 177 AIPHPDLTKLHQLAMQQTPFTPLGQTTPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS 236
Query: 281 --RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV 338
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + +
Sbjct: 237 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTPANI 292
Query: 339 KDAVYNVTGRL 349
A Y + RL
Sbjct: 293 SLAQYLINARL 303
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDE---- 524
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 158
Query: 525 -TQAAQSLLQAFILTG 539
Q +L+A+ + G
Sbjct: 159 VKQICVVMLEAYTIQG 174
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 14/183 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS----- 238
++ +R LC K+G++IGKGG I + L++++ + I + MP DER++T+ +S
Sbjct: 8 EDTVYRYLCPLRKIGSIIGKGGEIAKQLRADSKSNIRISEAMPGYDERVVTIFSSSEETN 67
Query: 239 --EGPESRYSPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLL-----VNARLVVASNQVG 290
E PAQ A+ +V R+I E + + V R++V ++Q+G
Sbjct: 68 LFEDTGEYVCPAQDALFMVHDRVIAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPTDQIG 127
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRL 349
C++GKGG +I +R T IRI D+ L ++ D ++ I GE S V+ A+Y V RL
Sbjct: 128 CVIGKGGQVIQNIRSETRAQIRITKDEHLPPLALSTDELLLIHGEPSVVRKALYQVATRL 187
Query: 350 RDN 352
+N
Sbjct: 188 HEN 190
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 104/180 (57%), Gaps = 10/180 (5%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ S R++C +G VIGKGG II+ ++ E+ A I V ++ E ++ +I ++A E E
Sbjct: 247 KDFSLRLVCPIANIGGVIGKGGGIIKQIRQESRASIKVDSSGAEGNDCIIFISAKEFFED 306
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ SP A + + R E T ++ D ++ RL+V +Q+GCL+GKGG IISEM
Sbjct: 307 Q-SPTMNAALRMQPRCSEKTEKESGDS------VITTRLLVGRSQIGCLMGKGGAIISEM 359
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF--SGTLNT 360
R +T +IRIIS D L K E+D +VQI+G +A+ V RL+ N F G L T
Sbjct: 360 RNLTRANIRIISEDNLPKVAGEDDEMVQITGSLEVASNALLQVILRLKANIFGRDGALTT 419
>gi|327275209|ref|XP_003222366.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 461
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 158/377 (41%), Gaps = 73/377 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLV+ ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVIPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TSS-------------VLTETSPYSRLKDP---ASFGVHSSVAVSH-DFSQ--------- 399
S+ +L ++ L P +F + A+ H D S
Sbjct: 186 ASAPIIFAGGQVRADTLLASAGNHAVLAQPQTAPAFTIQGQYAIPHPDVSSMHVLYFLYS 245
Query: 400 --PPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLEL 457
P LT+ + L + H P +P QT G G S S H
Sbjct: 246 LLPSLTK-LHQLAMQHP---PFTP---LGQTTPGFP-------GLDASTPASSH------ 285
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
E+ +P ++IG + G GS + +RQ+SGA++ + GS +R V
Sbjct: 286 --------------ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATEGSAERQVT 331
Query: 518 ISGTPDETQAAQSLLQA 534
I+G+P AQ L+ A
Sbjct: 332 ITGSPANISLAQYLINA 348
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVIPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|134026176|gb|AAI35317.1| LOC733863 protein [Xenopus (Silurana) tropicalis]
Length = 475
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/365 (24%), Positives = 160/365 (43%), Gaps = 41/365 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SCPERIVTIT---GPTDAI 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + L F I + S V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 72 FKAFSMIALKFEEDINASMTNSTVTSKPP---VTLRLVVPASQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 129 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 185
Query: 366 TS-------------SVLTETSPYSRLKDP---ASFGVHSSVAVSHDFSQPPLTQGMDHL 409
S ++L ++ L P +F + A+ H P ++ +
Sbjct: 186 ASGPIIFAGGQVRAETILASAGNHTVLAQPQPAPAFAIQGQYAIPH----PDVSSAHANY 241
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
L C L T + + ++ + G + + GL+ S + S
Sbjct: 242 TLLFLFICFGQHLLSTLTKLHQLAMQHTPFTPLGQT---TPGFPGLDATSPTSSH----- 293
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
E+ +P ++IG + G GS + +RQ+SGA++ + G+ +R V I+G+P AQ
Sbjct: 294 --ELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANASEGNGERQVTITGSPANISLAQ 351
Query: 530 SLLQA 534
L+ A
Sbjct: 352 YLINA 356
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I ++ L E D A++ T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTDAIFKAFSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 122 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 154
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 211 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 253
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
QT + G S S H E+ +P ++IG
Sbjct: 254 FPPLGQT-------NPAFPGLDASPPASTH--------------------ELTIPNDLIG 286
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 287 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 339
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 210
Query: 246 SPAQKAVVLVF----SRLIEGT------------------------------SEKGLDFS 271
P + ++F + I+G + GLD S
Sbjct: 211 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 270
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 271 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITI 323
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 324 TGTPANISLAQYLINARL 341
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 159/354 (44%), Gaps = 52/354 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNT 360
E+R+ TG +++ D L + +R V ISG + V + + ++ G T+
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVV 178
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
A +++ V+ ++ + A+ H P LT+ + L + + P
Sbjct: 179 APKPASTPVI--------FAGGQAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFP 222
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P T G R V W+ A +T E+ +P ++I
Sbjct: 223 PLGQTNPAFPGTD-RAVPFVRSPWA---------------CLDASPPASTHELTIPNDLI 266
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 267 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 320
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 179 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
QT + G S S H E+ +P ++IG
Sbjct: 222 FPPLGQT-------NPAFPGLDASPPASTH--------------------ELTIPNDLIG 254
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 255 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 307
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 246 SPAQKAVVLVF----SRLIEGT------------------------------SEKGLDFS 271
P + ++F + I+G + GLD S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 238
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 239 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITI 291
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 292 TGTPANISLAQYLINARL 309
>gi|291409713|ref|XP_002721143.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
Length = 340
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 38/350 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ LV RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPLVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V ++ + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKHICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS + ++ +D S G + + ++ QP LT+ H L S
Sbjct: 183 SSSPVI----FAGGQDRYSTGSDKAYTIQGQYAIPQPDLTK-------LHQLAVQQSHFP 231
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
T + SS +G+ GL A T+ E+ +P ++IG +
Sbjct: 232 MTHGNTGFSGIESSSPEVKGYWAGL--------------DASAQTTSHELTIPNDLIGCI 277
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
G G+ + + Q+SGA + + GSTDR V I+G+ AQ L+
Sbjct: 278 IGCQGAKINEICQMSGALIKIANTVEGSTDRQVTITGSAASISLAQYLIN 327
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 89/355 (25%), Positives = 151/355 (42%), Gaps = 15/355 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E A I + P ER + ++A + P++
Sbjct: 230 ESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDEPDAP 289
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA ++ V R+ + + + + G + RL+V S+Q G L+GK G I ++
Sbjct: 290 LSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQ 349
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD---NHFSGTLNTA 361
+ + +RI+ + + +DRVV+I GE V++AV ++ LR + L A
Sbjct: 350 DSSKSIVRIV-ENVPPVALNDDRVVEIQGEPLGVQEAVELISSHLRKFLVDRSVLPLFEA 408
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ + P + P + Q M P P
Sbjct: 409 HMKMHGMPREQPVPPPQHWGPPQTWIRPPNIPPGGPGFGGNPQFMHPRPQDSYYPSPDVP 468
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+ Q G+ G G S G + S + S + + + + + VIG
Sbjct: 469 HM-EKQPHYGISAYGREAPPSGAS------ATGNQPPSHAGSQVAHDMHIPLAYADAVIG 521
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ G+++ +R+ SGA V + E R + V I+GT + Q AQ L+Q F+
Sbjct: 522 AA----GASISYIRRHSGATVTIQESRGAPGEMTVEITGTAAQVQTAQQLIQNFM 572
>gi|30684386|ref|NP_849406.1| KH domain-containing protein [Arabidopsis thaliana]
gi|24762211|gb|AAN64172.1| putative KH domain protein [Arabidopsis thaliana]
gi|332658635|gb|AEE84035.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 532
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 103/176 (58%), Gaps = 24/176 (13%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTAS 238
++ +E+ F++LC + VIGKGG+ I+ ++ +G+ I V + +C DE +I VTA+
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P+ S A +AV+L+ + + +E V +L+V+S +GC++GK G+
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYINDEDAEN-----------VKMQLLVSSKVIGCVIGKSGS 415
Query: 299 IISEMRKVTGTSIRIISDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+I+E+RK T +I CIS + D +V++SGE S V+DA+ + RLR++
Sbjct: 416 VINEIRKRTNANI---------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLRED 462
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 106/394 (26%), Positives = 171/394 (43%), Gaps = 69/394 (17%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + + V +RILC D VG VIGK G +I A++ A I V + C +R+IT+
Sbjct: 28 DKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYC 87
Query: 238 S--EGPE------SRYSP---AQKAVVLVFSRLI----EGTSEKGLDFSSNKGLLVNARL 282
S E E S P AQ A++ V+ ++ E ++ +D NK RL
Sbjct: 88 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNK----ECRL 143
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK----CISENDRVVQISGEFSKV 338
+V +Q L+GK G I +R+ T S++++S + C E D VV ISGE V
Sbjct: 144 LVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESV 203
Query: 339 KDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGV-HSSVAVSHD 396
K A++ V S+++ + +P + D S V +SV V D
Sbjct: 204 KQALFAV---------------------SAIMYKINPRENIPLDSTSQDVPAASVIVPSD 242
Query: 397 FS-----QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSH 450
S Q DH+ L PS + G ++ V S ++H
Sbjct: 243 LSNSVYPQTGFYSNQDHI-LQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTH 301
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR-- 508
GG S+ +++ P I V G+ GS + R+R+ SG+ + V++ R
Sbjct: 302 GFGG--------SSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTK 353
Query: 509 LGSTDRIVVISGT--PDETQA----AQSLLQAFI 536
G + +++++ T PD+ ++ A LLQ +I
Sbjct: 354 CGDDECVIIVTATESPDDMKSMAVEAVLLLQEYI 387
>gi|124359391|gb|ABN05855.1| KH, type 1 [Medicago truncatula]
Length = 222
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 94/175 (53%), Gaps = 18/175 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS------- 238
V+FR+LC++ ++G VIGK GT+I+ LQ GA I + + E +R+I V +
Sbjct: 48 VAFRLLCNSSRIGGVIGKSGTVIKNLQLTTGAKIRIEDSPNESPDRVIMVIGASNIDGKV 107
Query: 239 -------EGPESRYSPAQKAVVLVFSRLIEGTSE-KGLDFSSNKGLLVNARLVVASNQVG 290
+G S AQ+A++ VF R++E +E +G++ V+ RLV S Q G
Sbjct: 108 MVRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDR---TVSCRLVADSAQAG 164
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
++GKGG ++ +++K TG I + D L CIS D V++ S S AV +
Sbjct: 165 SVIGKGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVIECSASRSMFGSAVTRI 219
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 150/353 (42%), Gaps = 63/353 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 179 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 221
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
QT + G S S H E+ +P ++IG
Sbjct: 222 FPPLGQT-------NPAFPGLDASPPASTH--------------------ELTIPNDLIG 254
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 255 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 307
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 246 SPAQKAVVLVF----SRLIEGT------------------------------SEKGLDFS 271
P + ++F + I+G + GLD S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 238
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 239 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITI 291
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 292 TGTPANISLAQYLINARL 309
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 168/368 (45%), Gaps = 47/368 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK ++ ++ E+GA S+ C ER+IT+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKNEESVKRIREESGARFSISEG--NCPERIITLT---GPTCAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ ++L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMMINKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + ++ + ++ V + V + + L T
Sbjct: 126 STGAQVQVSGDMLP---NSTEQAITVAVVPQSVTECVQQICLVM--------LETLPQCP 174
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
V+ PY + PAS V + A D +G D G H+ P L
Sbjct: 175 QGRVM--PIPYQPM--PASSPV--TCAGGQD-------RGSDAAGYPHATRDLGVPPLDA 221
Query: 426 A-----QTVTGVHLRGSSDVGRGWSQGLSHHKG----GLELGS----GSKSAI--VTNTT 470
T++ +HL + V R S H G G+E S G ++++ T TT
Sbjct: 222 CSTQGQHTISPLHLAKLNQVARQQSHIAMLHGGTGFAGIESSSPEVKGYRASLDASTQTT 281
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
E+ +P N+IG + G G N+ +RQ+SGA++ + P GS+ R V I+G+ AQ
Sbjct: 282 HELTIPNNLIGCIIGRQGVNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQY 341
Query: 531 LLQAFILT 538
L+ A + +
Sbjct: 342 LINARLFS 349
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 37/355 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASF-GVHSSVAVSHDFSQPPLTQG-MDHLGLSHSLDCPSSPKL 423
+SS P F G S + L +G H G SLD + L
Sbjct: 183 SSS-------------PVIFAGGQVSRQAGGHACETDLWEGRRSHTG-GVSLD---AVDL 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGL--SH----HKGGLELGSGSKSAIVTNTTVEIIVPE 477
A T+ G + D+ + + SH H G SG A T+ E+ +P
Sbjct: 226 HGAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGF-SGGIDASAQTTSHELTIPN 284
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++IG + G G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 285 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 339
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ G I+E+R+++G I+I + NDR V I+G + + A
Sbjct: 280 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSNDRQVTITGSTASISLA 335
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 336 QYLINVRL 343
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 11/180 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E +R LC K G++IGKGG I + ++SE + + + +P C+ER++T+ ++ +
Sbjct: 42 EETVYRYLCPVKKTGSIIGKGGDIAKQIRSETKSNMRINEALPGCEERVVTIYSTNEELN 101
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSSNKG--LLVNARLVVASNQVGCLLG 294
+ PA A+ V ++ + + G V R++V S+Q+GC++G
Sbjct: 102 HFGDDGELVCPALDALFKVHDMVVADIDHDDGNDDDDLGEKQTVTVRMLVPSDQIGCVIG 161
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
KGG +I +R T IR+I D L C +D ++QI GE V++A+Y V L N
Sbjct: 162 KGGQVIQNLRNDTNAQIRVIKDHLPSCALTLSHDELLQIIGEPLVVREALYQVASLLHAN 221
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DAR E +C + VG VIGKGG I ++ E GA I V + + D+ +I +++
Sbjct: 263 DAR----EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDEDDCIIVISS 318
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
E E + SPA A + RL + SEK G D + L ++ RL+V+S+Q+GCL+GKG
Sbjct: 319 KEFYEDQ-SPAVNAAI----RLQQRCSEKVGKDAND---LAISTRLLVSSSQIGCLIGKG 370
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
G +ISEMR VT +IRI+ + + K E++ +VQI+G A+ V RLR N F
Sbjct: 371 GAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGNPDAAMKALTQVILRLRANSF 429
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC 228
++Q V+ R+L +D++G VIGKGG +I+ L+++ A I V +P C
Sbjct: 141 EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPSC 188
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 37/355 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASF-GVHSSVAVSHDFSQPPLTQG-MDHLGLSHSLDCPSSPKL 423
+SS P F G S + L +G H G SLD + L
Sbjct: 183 SSS-------------PVIFAGGQVSRQAGGHACETDLWEGRRSHTG-GVSLD---AVDL 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGL--SH----HKGGLELGSGSKSAIVTNTTVEIIVPE 477
A T+ G + D+ + + SH H G SG A T+ E+ +P
Sbjct: 226 HGAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGF-SGGIDASAQTTSHELTIPN 284
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++IG + G G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 285 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 339
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ G I+E+R+++G I+I + NDR V I+G + + A
Sbjct: 280 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSNDRQVTITGSTASISLA 335
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 336 QYLINVRL 343
>gi|257831439|gb|ACV71020.1| UPA21 [Capsicum annuum]
Length = 433
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 164/350 (46%), Gaps = 27/350 (7%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
+R++ KVG++IG+ G +++ + + GA I V +R++ ++ E P+++ SP
Sbjct: 56 YRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVLEGPLGNADRIVLISGREDPDAQVSP 115
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A AV VF R + G ++ + +L++AS+Q L+G+ G+ I E+++ +
Sbjct: 116 AMDAVFRVFKR-VAGLEGGDPGAAAAGFAFCSFKLLMASSQAVHLIGRHGSTIKEIQERS 174
Query: 308 GTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST 366
G S+R++S D ++ + ++R+V+I GE KV DA V +LR ++ ++
Sbjct: 175 GASLRVLSEDDVVPYATADERIVEIRGEGLKVLDAFEAVVRQLRKFLVDHSMIPIFEKTC 234
Query: 367 SSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTA 426
S + P + S ++S D+S + D ++ LDC ++
Sbjct: 235 S----QDRPLESWAE-KSQSLNSEAGAVSDYS---FSMNRD----TYLLDCEAAMDSKLP 282
Query: 427 QTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGE 486
++ ++ G GG+ +G +VT T + VP + G
Sbjct: 283 RSTLSLY-------------GQDPGHGGIRTSAGRIGPVVTQMTKVMQVPLLYAEDIIGI 329
Query: 487 NGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
G+N+ +R+ S A + V E R + + I G+ E Q A+ L+Q FI
Sbjct: 330 GGTNIAYIRRTSKAVLTVQESRGLPEEITIEIKGSSSEVQTAEQLIQEFI 379
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD-ETQ 526
+ ++VP +GS+ G G + ++ + +GA++ V E LG+ DRIV+ISG D + Q
Sbjct: 53 DNVYRLVVPLVKVGSIIGRKGELVKKMCEQTGARIRVLEGPLGNADRIVLISGREDPDAQ 112
Query: 527 AAQSLLQAF 535
+ ++ F
Sbjct: 113 VSPAMDAVF 121
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 102/170 (60%), Gaps = 12/170 (7%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E++FR+LC K G+VIG+ G +I+ ++S+ GA + V + +ER+I V++S+ +
Sbjct: 312 EITFRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVCEQVNGAEERIICVSSSDDGLAP 371
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AQ A+ V+ ++E S+ + + RL+V ++Q+GCL+GKGG+II ++R
Sbjct: 372 MLAAQVALFRVYRCIVE---------SAGNEIPLPFRLLVQTSQIGCLIGKGGSIIKQIR 422
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA--VYNVTGRLRDN 352
TG ++R++ + L + +D +++I G++ A + V+GRLR N
Sbjct: 423 NETGATVRVLPSEALPSCANDDELLEI-GQWPADACALGIRIVSGRLRGN 471
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 156/378 (41%), Gaps = 108/378 (28%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV------TASE 239
V +R+LC ++G VIGK G +I+A ++E GA + V T DER+I V T E
Sbjct: 58 VRYRLLCPTTRIGRVIGKEGRVIKATRAETGARVKVAPTTRGADERVILVASGDDLTVGE 117
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN---------------ARLVV 284
E + A+ A+ +F + T E+G+ + RL+V
Sbjct: 118 DGEG-MTTAEVALFRIFDTI---TGEEGVTAARGGEGEGEGEASGGSTRGASTPICRLLV 173
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL-KCISENDRVVQISG---------- 333
QVG L+GKGGT+IS +R +G ++R++ +L C S+ D ++QI+
Sbjct: 174 PRVQVGSLIGKGGTVISAIRASSGATVRVMPANMLPACASQGDELLQITAPSRDADGAER 233
Query: 334 ----EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVL---TETSPYSRLKDP-ASF 385
+ VK+A+ + LR+ + S T RS +T+P++ ++ P A
Sbjct: 234 DQKLSMASVKNALRMIAKHLRE-YPSKNAATESNRSPFEAFMIGNKTAPHAGVESPGAKN 292
Query: 386 GVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWS 445
G H S T + GV++ G +++
Sbjct: 293 GGHMS----------------------------------TRMNLNGVYVPGGTEI----- 313
Query: 446 QGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505
T ++ P + GSV G NG + ++R +GAKV V
Sbjct: 314 ------------------------TFRLLCPVSKTGSVIGRNGEVIQQIRSQTGAKVKVC 349
Query: 506 EPRLGSTDRIVVISGTPD 523
E G+ +RI+ +S + D
Sbjct: 350 EQVNGAEERIICVSSSDD 367
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 9/76 (11%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS---------TDRIVVISG 520
+V++ + IGSV G G N+ RQ+SGA++ ++ GS +DR++ ISG
Sbjct: 546 SVQMAISSQHIGSVLGRGGCNISLARQVSGARIKLYPGAAGSRRTADRSVDSDRLLEISG 605
Query: 521 TPDETQAAQSLLQAFI 536
+ ++ +AQ ++Q FI
Sbjct: 606 SSEQVASAQDIIQRFI 621
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 93.6 bits (231), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 157/352 (44%), Gaps = 62/352 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS------ 223
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
H ++H G G A T+ E+ +P ++I
Sbjct: 224 ------------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIPNDLI 256
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 257 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 308
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 103/257 (40%), Gaps = 67/257 (26%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMP-----------------ECDERLITV---TASEGPESR----Y 245
++ GA + V G +P EC +++ V T S+ P Y
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 182
Query: 246 SPAQKAVVLVFS----RLIEGTS-----------------------------EKGLDFSS 272
P + ++F+ I+G GLD S+
Sbjct: 183 RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASA 242
Query: 273 NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
+ L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+
Sbjct: 243 QT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVTIT 295
Query: 333 GEFSKVKDAVYNVTGRL 349
G + + A Y + RL
Sbjct: 296 GSAASISLAQYLINVRL 312
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 56/349 (16%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H P LT+ H L +P
Sbjct: 183 ASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-------LHQLAMQQTPFPPL 224
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
QT G S S H E+ +P ++IG + G
Sbjct: 225 GQTTPAFP-------GLDASPPASTH--------------------ELTIPNDLIGCIIG 257
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 258 RQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 105/257 (40%), Gaps = 63/257 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 246 SPAQKAVVLVF----SRLIEGT-----------------------------SEKGLDFSS 272
P + ++F + I+G + GLD S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTTPAFPGLDASP 238
Query: 273 NKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+
Sbjct: 239 PAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITIT 291
Query: 333 GEFSKVKDAVYNVTGRL 349
G + + A Y + RL
Sbjct: 292 GTPANISLAQYLINARL 308
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 165/355 (46%), Gaps = 37/355 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASF-GVHSSVAVSHDFSQPPLTQG-MDHLGLSHSLDCPSSPKL 423
+SS P F G S + L +G H G SLD + L
Sbjct: 183 SSS-------------PVIFAGGQVSRQAGGHACETDLWEGRRSHTG-GVSLD---AVDL 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGL--SH----HKGGLELGSGSKSAIVTNTTVEIIVPE 477
A T+ G + D+ + + SH H G SG A T+ E+ +P
Sbjct: 226 HGAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGF-SGGIDASAQATSHELTIPN 284
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++IG + G G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 285 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 339
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
G+D S+ + L + ++ +GC++G+ G I+E+R+++G I+I + ND
Sbjct: 268 GIDASAQA---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSND 320
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 321 RQVTITGSTASISLAQYLINVRL 343
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 158/349 (45%), Gaps = 59/349 (16%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR- 364
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
S+S V+ ++L ++ S P+T G S SSP++
Sbjct: 183 SSSPVIFAGGQLTKLHQ-----------LAMQQSHFPMTHGNTGFSGIES----SSPEV- 226
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
+G+ GL A T+ E+ +P ++IG +
Sbjct: 227 -----------------KGYWAGL--------------DASAQTTSHELTIPNDLIGCII 255
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 256 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 304
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 104/249 (41%), Gaps = 56/249 (22%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTAS----------------EGPES------RYSP 247
++ GA + V G +P ER IT+ E P R P
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 248 AQKAVVLVFSRLIE----------------GTSEKGLDFSSNK------GLLVNAR---- 281
+ V+ +L + T G++ SS + GL +A+
Sbjct: 183 SSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSH 242
Query: 282 -LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G + +
Sbjct: 243 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSAASISL 298
Query: 341 AVYNVTGRL 349
A Y + RL
Sbjct: 299 AQYLINVRL 307
>gi|224127654|ref|XP_002329331.1| predicted protein [Populus trichocarpa]
gi|222870785|gb|EEF07916.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 112/198 (56%), Gaps = 21/198 (10%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
R E S +ILCS K+G VIGKGG+ ++ +Q E GA I V E +ER I V+A
Sbjct: 304 GREPSAEFSMKILCSTGKIGGVIGKGGSNVKIVQQETGASIHVEDASAESEERAIRVSAF 363
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
EG ++P + + + +L + TS DFS KG+++ RL+V S++VGC+LG+GG
Sbjct: 364 EG---LWNPRSQTIDAIL-QLQDKTS----DFSE-KGMII-TRLLVPSSKVGCILGQGGQ 413
Query: 299 IISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
+I+EMR+ IR+ + KC S+++ +VQISG + KDA+ + RLR
Sbjct: 414 VINEMRRRLQADIRVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLR------- 466
Query: 358 LNTARTRSTSSVLTETSP 375
ART ++ TE P
Sbjct: 467 ---ARTLRDANAGTEPGP 481
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 103/187 (55%), Gaps = 22/187 (11%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--------- 238
+RILC + K+G VIGKGG I++AL+ E + I+V ++ DER+I + +S
Sbjct: 46 YRILCPSRKIGGVIGKGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKPPRKMD 105
Query: 239 --------EGPESRYSP---AQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVAS 286
G + + P AQ A++ V R++E G+ N +V ARL+V +
Sbjct: 106 GDEGLPAGNGQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVVTARLLVPN 165
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
N VGC+LGK G +I +R TG +IR++ +D L C + D +VQISG+ + K A+Y +
Sbjct: 166 NMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPSCAMDTDELVQISGKPAVAKRALYEI 225
Query: 346 TGRLRDN 352
+ L N
Sbjct: 226 SILLHQN 232
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV----HEPRLG-STDRIVVISGTPDE 524
T ++VP N++G V G+ G + RLR +GA + V H P TD +V ISG P
Sbjct: 158 TARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPSCAMDTDELVQISGKP-- 215
Query: 525 TQAAQSLLQAFIL 537
A ++L + IL
Sbjct: 216 AVAKRALYEISIL 228
>gi|293331673|ref|NP_001170496.1| uncharacterized protein LOC100384498 [Zea mays]
gi|238005660|gb|ACR33865.1| unknown [Zea mays]
Length = 239
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 132/264 (50%), Gaps = 29/264 (10%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
+N RL+V + +GCL+G+GG+I+++MRK T +I I + S +D +V++SGE K
Sbjct: 1 MNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVSGEADK 60
Query: 338 VKDAVYNVTGRLRDNHFSGTL---NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVS 394
++DA+ + RLR+ ++ N+ R + +++ S L PA
Sbjct: 61 LRDALVQIILRLREAVLKESVESQNSDRDGQLTVAASDSLYGSSLPLPALL--------- 111
Query: 395 HDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG 454
P Q + LG + + +++ + G +D G G GL +
Sbjct: 112 ------PHNQQIAPLGYDRRGEPERALEVFPRTSSYGYSSMQVTDDGYG---GLPSY--- 159
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDR 514
SK+ +E+ VP + I V G++G+NL +R+ISGA + + EP+ +
Sbjct: 160 -----ASKAYEEHVPRLEMTVPASGISKVMGKHGTNLDNIRKISGAHIEIIEPKSSRHEH 214
Query: 515 IVVISGTPDETQAAQSLLQAFILT 538
I ISGT ++ +A++L++AFI++
Sbjct: 215 IAYISGTSEQRHSAENLIKAFIMS 238
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 16/352 (4%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FRIL KVGA+IG+ G I+ + E+ A I + P ER + ++A + P+ + SP
Sbjct: 116 FRILVPVHKVGAIIGRKGEFIKRMCEESKARIKILDGPPGVPERAVMISAKDEPDEQISP 175
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A ++ + R+ +G+ + G + RL+V ++Q G L+GK G I ++ +
Sbjct: 176 AMDGLLRIHKRIADGSDGEFGQTQRGTGTMGPTRLLVPASQAGSLIGKQGATIKSIQDSS 235
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD---NHFSGTLNTARTR 364
+RI+ + + +DRVV+I GE V+ AV + LR +H L + +
Sbjct: 236 KAVVRIVEN-VPPVALNDDRVVEIQGEPLSVQKAVELIASHLRKFLVDHSVLPLFEQQMK 294
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
S + P + P Q M + P P +
Sbjct: 295 MHSMPREQPMPAPQQWGPPQPWGPPPNHPPGGPGYAGNPQFMPPRPQDNYYPPPDVPPM- 353
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
Q G+ S GR G+S G+ S + + T + +P + +V
Sbjct: 354 EKQPHYGI-----SAYGREAPSGVSAS------GNQPPSHVASQVTHNMQIPLSYADAVI 402
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
G G+++ +R+ SGA V + E R + V I G+ + Q AQ L+Q F+
Sbjct: 403 GAAGASISYIRRHSGAAVTIQESRGAPGEMNVEIIGSASQVQTAQQLIQNFM 454
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 151/349 (43%), Gaps = 55/349 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIISSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
S+ + ++ + A+ H P LT+ H L +P
Sbjct: 183 ASTPVI-------FAGGQAYTIQGQYAIPH----PDLTK-------LHQLAMQQTPFPPL 224
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYG 485
QT + GL A +T E+ +P ++IG + G
Sbjct: 225 GQT------------NPAFPAGL--------------DASPPASTHELTIPNDLIGCIIG 258
Query: 486 ENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 259 RQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 307
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D ++++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIISSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 246 SPAQKAVVLVF----SRLIEGTSE------------------------------KGLDFS 271
P + ++F + I+G GLD S
Sbjct: 179 RPKPASTPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPAGLDAS 238
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 239 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITI 291
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 292 TGTPANISLAQYLINARL 309
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 92.4 bits (228), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 69/353 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG DA+
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISG----TPDAIIQC---------------- 190
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ V+ E ++ + A+ H P LT+ + L + + P P
Sbjct: 191 -VKQICVVMLE-----------AYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 230
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 231 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 280
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 281 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 333
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 62/254 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEG-- 262
I+ ++ GA + V G +P ER +T++ + P++ ++ VV++ + I+G
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQCVKQICVVMLEAYTIQGQY 208
Query: 263 --------------------------------------TSEK---------GLDFSSNKG 275
+SE+ GLD S
Sbjct: 209 AIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS 268
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G
Sbjct: 269 ---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTP 321
Query: 336 SKVKDAVYNVTGRL 349
+ + A Y + RL
Sbjct: 322 ANISLAQYLINARL 335
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDE---- 524
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 190
Query: 525 -TQAAQSLLQAFILTG 539
Q +L+A+ + G
Sbjct: 191 VKQICVVMLEAYTIQG 206
>gi|354490197|ref|XP_003507246.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cricetulus
griseus]
Length = 322
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 92/352 (26%), Positives = 156/352 (44%), Gaps = 62/352 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 171
Query: 366 TSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSS 420
S T PY R K P F + + ++ QP LT+ + L + S
Sbjct: 172 QSPPKGVTIPY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS------ 223
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
H ++H G G A T+ E+ +P ++I
Sbjct: 224 ------------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIPNDLI 256
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G + G G+ + +RQ+SGA++ P GSTDR V I+G+ AQ L+
Sbjct: 257 GCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLAQYLI 308
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 96/355 (27%), Positives = 164/355 (46%), Gaps = 37/355 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASF-GVHSSVAVSHDFSQPPLTQG-MDHLGLSHSLDCPSSPKL 423
+SS P F G S + L +G H G SLD + L
Sbjct: 183 SSS-------------PVIFAGGQVSRQAGGHACETDLWEGRRSHTG-GVSLD---AVDL 225
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGL--SH----HKGGLELGSGSKSAIVTNTTVEIIVPE 477
A + G + D+ + + SH H G SG A T+ E+ +P
Sbjct: 226 HGAYIIQGQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGF-SGGIDASAQTTSHELTIPN 284
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++IG + G G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 285 DLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 339
Score = 39.3 bits (90), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ G I+E+R+++G I+I + NDR V I+G + + A
Sbjct: 280 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSNDRQVTITGSTASISLA 335
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 336 QYLINVRL 343
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 94/353 (26%), Positives = 162/353 (45%), Gaps = 27/353 (7%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG +IG+ G +I+ E A I V +R++ ++ E E+ SP
Sbjct: 46 FRLIVPVVKVGIIIGRKGELIKKTCEETHARIRVLDAPVGTPDRIVLISGKEDLEAPLSP 105
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGL-LVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A A++ +F R + G SE + ++ G+ L + RL+VAS Q L+GK G+ I +++
Sbjct: 106 AMDAILRIFKR-VSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQEN 164
Query: 307 TGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG IR++S D+L ++R++ + GE KV A+ V G LR ++ ++
Sbjct: 165 TGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRKFLVDSSVIPLFEKT 224
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
++ +++ D S + SQP + D P+ +
Sbjct: 225 CNATISQDRQTDAWADKPSL---------YSASQPSIVA-----------DIPTKRDSFF 264
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII-VPENVIGSVY 484
A + + SS + Q S G SA + T ++ + +P + +
Sbjct: 265 ADRESQLDSLLSSSTMSLYGQDSSSISGLRSSAFNRASASIVTTVIQTMQIPLSYAEDII 324
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQAFI 536
G G+N+ +R+ SGA + V E R+ D I+V I GT + Q AQ L+Q I
Sbjct: 325 GIQGTNIDYIRRTSGAILTVQESRV--PDEIIVEIKGTSTQVQTAQQLIQEVI 375
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 92.0 bits (227), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 162/372 (43%), Gaps = 83/372 (22%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT------ 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A+ F+ LI E+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 76 ----NAIFSAFT-LITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 130
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 131 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 187
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 188 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 239
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L+ + G LR ++ R Q H
Sbjct: 240 HTALA---------------ALAGSQLRTANPANRAQQQ---QH---------------- 265
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 266 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 321
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 322 VALAQYLINMRI 333
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+A+ L+ R A R QQQ+ + SND +G +IGKGGT I ++ +GA I +
Sbjct: 241 TALAALAGSQLRTANPANRAQQQQ--HEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI 298
Query: 222 GATMPECDERL-----ITVTASEGPES 243
C+ER T+T S P+S
Sbjct: 299 S----NCEEREGGNTDRTITISGNPDS 321
>gi|218192926|gb|EEC75353.1| hypothetical protein OsI_11789 [Oryza sativa Indica Group]
Length = 478
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+E S R+LC+ VG VIGKGG II+ ++ E+GAFI V ++ E D+ +ITV+A E E
Sbjct: 214 KEFSLRLLCAASNVGGVIGKGGGIIKQIRQESGAFIKVDSSNTE-DDCIITVSAKEFFED 272
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
SP A V + R E T + S RL+V+++++GCL+GKGG+II+E+
Sbjct: 273 PVSPTINAAVHLQPRCSEKTDPESAIPS------YTTRLLVSTSRIGCLIGKGGSIITEI 326
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
R+ + +IRI+S + + K +E++ +VQISG+ V+ A+ +T RL+ N F
Sbjct: 327 RRTSRANIRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF 378
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 11/151 (7%)
Query: 211 LQSEAGAFISVGATMPECDERLITVTASE-------GPESRYSPAQKAVVLVFSRLIEGT 263
++++ A I +G ++ CDER+IT+ +S E + PAQ A+ V +L
Sbjct: 1 MRADTQAKIRIGESVSGCDERVITIFSSSRETNTLVDAEDKVCPAQDALFRVHEKL--SI 58
Query: 264 SEKGLDFSSNKGLL-VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ-LLKC 321
+ + S++GL V RL+V S+Q+GC++GKGG II +R TG IR++S++ L C
Sbjct: 59 DDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPAC 118
Query: 322 ISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
D ++QISG+ + V+ A+ V+ RL DN
Sbjct: 119 AISGDELLQISGDSTVVRKALLQVSSRLHDN 149
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT 224
LS++ D + ++ +V+ R+L +D++G +IGKGG II+ ++S+ GA I V
Sbjct: 56 LSIDDD-IGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNEN 114
Query: 225 MPEC 228
+P C
Sbjct: 115 LPAC 118
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 108/364 (29%), Positives = 172/364 (47%), Gaps = 48/364 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ L A + + ER++ V+ E P SP
Sbjct: 42 FRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLELSP 101
Query: 248 AQKAVVLVFSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A A++ VF R+I +G +E G ++ G+ ARL+V Q L+GK G I ++
Sbjct: 102 AMDALMRVFKRVIGITDGAAE-GTQAAATPGVCA-ARLLVPGAQAINLIGKQGATIKAIQ 159
Query: 305 KVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRD---NH----- 353
+ TG +IR+IS D+ + +++++R+V+I G+ KV A+ V+ LR +H
Sbjct: 160 ESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVDHSVLPL 219
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
F T NTA ++ + ++ S H S+ S +QPP +D L
Sbjct: 220 FEKT-NTAVSQDHNVGWSDMS-------------HPSIG-SAQVNQPPSV--VDEYILPV 262
Query: 414 SLDCPSSPKLWTAQTVT---GVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
D L+ + +H G S GR LS + G+G ++T T
Sbjct: 263 KRDT-----LYLERETLLDHNIHRSGVSLYGR--DPALSTLRPPGIHGAGP---LLTQIT 312
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQ 529
+ +P + G G+N+ +R SGA V + E LGS D I V I GT + QAAQ
Sbjct: 313 QTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQAAQ 371
Query: 530 SLLQ 533
L+Q
Sbjct: 372 QLIQ 375
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 69/353 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG DA+
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISG----TPDAIIQC---------------- 158
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ V+ E ++ + A+ H P LT+ + L + + P P
Sbjct: 159 -VKQICVVMLE-----------AYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 198
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 199 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 248
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 249 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 301
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 62/254 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEG-- 262
I+ ++ GA + V G +P ER +T++ + P++ ++ VV++ + I+G
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQCVKQICVVMLEAYTIQGQY 176
Query: 263 --------------------------------------TSEK---------GLDFSSNKG 275
+SE+ GLD S
Sbjct: 177 AIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS 236
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G
Sbjct: 237 ---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTP 289
Query: 336 SKVKDAVYNVTGRL 349
+ + A Y + RL
Sbjct: 290 ANISLAQYLINARL 303
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDE---- 524
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 158
Query: 525 -TQAAQSLLQAFILTG 539
Q +L+A+ + G
Sbjct: 159 VKQICVVMLEAYTIQG 174
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 93/351 (26%), Positives = 160/351 (45%), Gaps = 48/351 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVK-MREESGARINI--SEGNCPERIITLA---GPTNAI 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 68 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 124
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + + T S
Sbjct: 125 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLS 170
Query: 366 TSSVLTETSPY--SRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSP 421
S T PY P F + + ++ QP LT+ + L + S P
Sbjct: 171 QSPPKGVTIPYWPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS----HFP 225
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+G+ SS +G+ GL A T+ E+ +P ++IG
Sbjct: 226 MTHGNTGFSGIE--SSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIG 269
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 270 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 320
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 105/213 (49%), Gaps = 44/213 (20%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP-ECDERLITVTA-- 237
T + V FR+LC + GA+IGKGG++IR LQS G+ I V +P +ER++ + A
Sbjct: 237 TAAESVHFRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPS 296
Query: 238 -----------SEGPESRY---------------------SPAQKAVVLVFSRLIEGTSE 265
SE P S S AQ A++ V R++ G
Sbjct: 297 GKKKDDSNVFDSENPSSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVLERIVFGDDA 356
Query: 266 -----KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLL 319
GLD ++ L R++V NQV L+ KGG +I +R+ +G +RI S DQ+
Sbjct: 357 ASVDGDGLDKGESESL---CRMIVRGNQVDFLMSKGGKMIQRIREDSGAIVRISSTDQIP 413
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
C D V+QI+G+FS VK A+ +T L+++
Sbjct: 414 PCAFPGDVVIQITGKFSSVKKALLLITNCLQES 446
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI 219
++EVSFR+LC DKVG++IGKGG ++RALQ+E+GA I
Sbjct: 495 EEEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASI 531
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Query: 212 QSEAGAFISVGATMPECDERLITVTASEG-PESRYSPAQKAVVLVFSRLIEGTSEKG--L 268
Q + +F SV CD T +G P S Y + VFS+L++ + G +
Sbjct: 170 QCISTSFFSVSVNGSNCDFFKSTKGLRQGDPLSPYFFV--LAIEVFSKLLQSKFDSGRLM 227
Query: 269 DFSSNK-----GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS 323
+FSS+K V+ RL+ +++ G ++GKGG++I ++ VTG+ IR+I D +
Sbjct: 228 EFSSSKRPATAAESVHFRLLCPASRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIP---VP 284
Query: 324 ENDRVVQISGEFSKVKD 340
+RVV I K KD
Sbjct: 285 SEERVVLIIAPSGKKKD 301
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 155/353 (43%), Gaps = 69/353 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG DA+
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISG----TPDAIIQC---------------- 190
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ V+ E ++ + A+ H P LT+ + L + + P P
Sbjct: 191 -VKQICVVMLE-----------AYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPP 230
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T G L S +Q L GL+ A +T E+ +P ++IG
Sbjct: 231 LGQTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIG 280
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 281 CIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 333
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 109/254 (42%), Gaps = 62/254 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEG-- 262
I+ ++ GA + V G +P ER +T++ + P++ ++ VV++ + I+G
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT--PDAIIQCVKQICVVMLEAYTIQGQY 208
Query: 263 --------------------------------------TSEK---------GLDFSSNKG 275
+SE+ GLD S
Sbjct: 209 AIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEAQNLMGQSSGLDASPPAS 268
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G
Sbjct: 269 ---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN----ATEGSSERQITITGTP 321
Query: 336 SKVKDAVYNVTGRL 349
+ + A Y + RL
Sbjct: 322 ANISLAQYLINARL 335
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDE---- 524
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 190
Query: 525 -TQAAQSLLQAFILTG 539
Q +L+A+ + G
Sbjct: 191 VKQICVVMLEAYTIQG 206
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 103/410 (25%), Positives = 177/410 (43%), Gaps = 75/410 (18%)
Query: 177 LDARTQQQE---VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
+DA+++ ++ R++ +VG++IGK G I++ + E+GA I++ + C ER++
Sbjct: 1 MDAKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI--SDGSCPERIV 58
Query: 234 TVTASEGPESRYSPAQKAVVLVFSR---LIEGTSEK-GLDFSSNKGLLVNARLVVASNQV 289
T++ S E+ Y KA L+ ++ IE + K G G+ + RL+V ++Q
Sbjct: 59 TISGST--EAIY----KAFSLICTKVEEFIEMQNGKTGATAIGKCGMTL--RLIVPASQC 110
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GKGG I E+R+ TG I++ SD L + +R V ++G + ++++ +
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQVASDVLPQ---STERAVTLTGTRDSITQCIFHICAVM 167
Query: 350 RDNHFSG-----------------------TLNTARTRSTSSV---LTETSPYS--RLKD 381
++ G TL +A + + V + PY+ L
Sbjct: 168 VESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTMMVGGGPYNAPMLMV 227
Query: 382 PASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTG---------- 431
P S G +S+ + P L L P + G
Sbjct: 228 PPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGLGSLGGPANSFNPAA 287
Query: 432 -VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
L GS G ++ GG + T E+ VP ++IG + G+ G+
Sbjct: 288 LAALAGSQLRSNGSGANINSRSGGGQ------------QTHEMTVPNDLIGCIIGKGGTK 335
Query: 491 LLRLRQISGAKVIVH--EPRLG--STDRIVVISGTPDETQAAQSLLQAFI 536
+ +RQISGA + + E R G STDR + I+G PD AQ L+ I
Sbjct: 336 IAEIRQISGAMIRISNCEDREGSASTDRTITITGNPDSVALAQYLINMRI 385
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 90/354 (25%), Positives = 155/354 (43%), Gaps = 48/354 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + + + +
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLEVQ-----SKS 173
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP-PLTQGMDHLGLSHSLDCPSS 420
R S V+ P S P F + + ++ P P + L + + P
Sbjct: 174 PPRGVSRVVAP-KPAS---TPVIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQT---PFP 226
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P T G R V W+ A +T E+ +P ++I
Sbjct: 227 PLGQTNPAFPGTD-RAVPFVRSPWA---------------CLDASPPASTHELTIPNDLI 270
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 271 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 324
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 172/364 (47%), Gaps = 48/364 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ L A + + ER++ V+ E P SP
Sbjct: 42 FRLVVPVLKVGSIIGRKGELIKRLVEGTKARVRILEGPVGATERIVLVSGKEDPGLELSP 101
Query: 248 AQKAVVLVFSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A A++ VF R+I +G +E G ++ G+ ARL+V Q L+GK G I ++
Sbjct: 102 AMDALMRVFKRVIGITDGAAE-GTQAAATPGVCA-ARLLVPGAQAINLIGKQGATIKAIQ 159
Query: 305 KVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRD---NH----- 353
+ TG +IR+IS D+ + +++++R+V+I G+ KV A+ V+ LR +H
Sbjct: 160 ESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVDHSVLPL 219
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS- 412
F T NTA ++ + ++ S H S+ S +QPP +D L
Sbjct: 220 FEKT-NTAVSQDHNVGWSDMS-------------HPSIG-SAQVNQPPSV--VDEYILPV 262
Query: 413 --HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
+L P L +H G S GR LS + G+G ++T T
Sbjct: 263 KRDTLYLEREPLL-----DHNIHRSGVSLYGR--DPALSTLRPPGIHGAGP---LLTQIT 312
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQ 529
+ +P + G G+N+ +R SGA V + E LGS D I V I GT + QAAQ
Sbjct: 313 QTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQAAQ 371
Query: 530 SLLQ 533
L+Q
Sbjct: 372 QLIQ 375
>gi|12597878|gb|AAG60186.1|AC084763_6 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|31433543|gb|AAP55041.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|125532979|gb|EAY79544.1| hypothetical protein OsI_34673 [Oryza sativa Indica Group]
gi|125575714|gb|EAZ16998.1| hypothetical protein OsJ_32483 [Oryza sativa Japonica Group]
gi|215769329|dbj|BAH01558.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 458
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 165/356 (46%), Gaps = 28/356 (7%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ L E A + V ER++ V+ E P P
Sbjct: 58 FRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVSGKEDPALELPP 117
Query: 248 AQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A A++ VF R+ I + +G ++ G+ ARL+V Q L+GK G I +++
Sbjct: 118 AMDALMRVFKRVSGITDGAAEGTQAATAPGVCA-ARLLVPGAQAINLIGKQGASIKAIQE 176
Query: 306 VTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
TG +IR+IS D+ + + E++R+V+I GE KV A+ V+ LR ++
Sbjct: 177 GTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHLRKFLVDHSVLPLF 236
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
++ ++V + R D + H S+ VS +QPP +D L D P
Sbjct: 237 EKTNATVTQD-----RSTDAWTDISHPSI-VSAQINQPPPV--VDEYILPMKRD----PL 284
Query: 423 LWTAQTVT--GVHLRGSSDVGRGWSQGLSHHKG--GLELGSGSKSAIVTNTTVEIIVPEN 478
+ + +H G S GR + G G G S I + + E+
Sbjct: 285 FLEREPLIDHNIHRSGVSLYGRDPALSTLRTSGIHGGGPGGPLLSQITQTMQIPLTYAED 344
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQAAQSLLQ 533
+IG G+N+ +R SGA V + E LGS D I V + GT + QAA L+Q
Sbjct: 345 IIGV----KGANIAYIRANSGAVVTIQE-SLGSPDDITVEMKGTSSQVQAAYQLIQ 395
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET-- 525
++ ++VP +GS+ G G + RL + + AKV V E +G+T+RIV++SG D
Sbjct: 55 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVSGKEDPALE 114
Query: 526 --QAAQSLLQAF 535
A +L++ F
Sbjct: 115 LPPAMDALMRVF 126
>gi|348503027|ref|XP_003439068.1| PREDICTED: poly(rC)-binding protein 4-like [Oreochromis niloticus]
Length = 446
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 98/364 (26%), Positives = 169/364 (46%), Gaps = 49/364 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A +++ C ER+IT+T S +S +
Sbjct: 16 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARVNISEG--SCPERIITITGST--DSVF 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+A ++ +L E + + + + V RLV+ ++Q G L+GKGG I E+R+
Sbjct: 72 ----RAFTMITYKLEEDLTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEIRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG I++ D L + +R V ISG V V + + ++ G
Sbjct: 128 STGAQIQVAGDLL---PNSTERGVTISGNQDSVIQCVKLICTVILESPPKGA-------- 176
Query: 366 TSSVLTETSPYSRLKDPASFGVHSS-VAVSHDFSQPPL---TQGMDHLGLSHSLDCPSSP 421
T PY PA+ + + V + +F+ PL QG LD +
Sbjct: 177 -------TIPYRPSPSPAALLIAGNQVFEASEFAPHPLYSVAQG--------GLDLQQA- 220
Query: 422 KLWTAQTVTGV-HLRGSSDVGRGWSQGLS---HHKGGLELGSGSKSAIVTNTTVEIIVPE 477
+T Q G+ H + QGLS + G S S T+ E+++P
Sbjct: 221 --YTLQNQYGIPHSELAKLHQLSVQQGLSPIAQPASAVIPGMDSNS----QTSQELLIPN 274
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
++IGS+ G G+ + +RQ+SGA++ + G++DR V I+GTP AQ L+ + +
Sbjct: 275 DLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDGTSDRHVTITGTPVSINLAQYLITSCLE 334
Query: 538 TGPS 541
T S
Sbjct: 335 TAKS 338
Score = 41.6 bits (96), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 80/257 (31%)
Query: 169 LESDRVATLDART--QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATM 225
LE D A + T + V+ R++ + G++IGKGG I+ ++ GA I V G +
Sbjct: 81 LEEDLTALVANGTISSKPPVTLRLVIPASQCGSLIGKGGAKIKEIRESTGAQIQVAGDLL 140
Query: 226 PECDERLITVTAS----------------EGPES------RYSPAQKAVVLVFSRLIEGT 263
P ER +T++ + E P R SP+ A+++ +++ E +
Sbjct: 141 PNSTERGVTISGNQDSVIQCVKLICTVILESPPKGATIPYRPSPSPAALLIAGNQVFEAS 200
Query: 264 ----------SEKGLDF-----------------------SSNKGLLVNAR--------- 281
++ GLD S +GL A+
Sbjct: 201 EFAPHPLYSVAQGGLDLQQAYTLQNQYGIPHSELAKLHQLSVQQGLSPIAQPASAVIPGM 260
Query: 282 ---------LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
L++ ++ +G ++G+ GT I+E+R+V+G I+I S + +DR V I+
Sbjct: 261 DSNSQTSQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGS----QLDGTSDRHVTIT 316
Query: 333 GEFSKVKDAVYNVTGRL 349
G + A Y +T L
Sbjct: 317 GTPVSINLAQYLITSCL 333
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/367 (24%), Positives = 158/367 (43%), Gaps = 38/367 (10%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG +IG+ G I+ + E A + + P +R + ++A E P S
Sbjct: 43 ESVFRMLVPAQKVGGIIGRKGEFIKKIVEETRARVKILDGPPGTVQRAVMISAKEEPGSS 102
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ + R+I+G S V+ +L+V ++Q G L+GK G + ++
Sbjct: 103 VPPAVDGLLRIHKRIIDGLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQ 162
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFS 355
+ + +R++ + L + ++DRVV++ G+ + V A+ + LR F
Sbjct: 163 EASNCIVRVLGAEDLPIFALQDDRVVEVVGDPAGVHKALELIASHLRKFLVDRGVIPIFE 222
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+ TA + S P + G + PP + +D S +
Sbjct: 223 MNMQTANPHHAEHMPPHQSWGPSQGLPPNVGGGPGFGPPSQYMPPP--RQLDSYYPSAEM 280
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG----SGSKSA--IVTNT 469
P V R QG+S + +G S ++SA IVT
Sbjct: 281 PPP---------------------VDRQPHQGISAYGRDASIGVHASSNTQSAPSIVTQI 319
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P + +V G G+++ +R+ SGA V + E R + V ISGT + Q AQ
Sbjct: 320 TQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMTVEISGTASQVQTAQ 379
Query: 530 SLLQAFI 536
L+Q F+
Sbjct: 380 QLIQNFM 386
>gi|327265639|ref|XP_003217615.1| PREDICTED: poly(rC)-binding protein 4-like [Anolis carolinensis]
Length = 422
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 96/374 (25%), Positives = 166/374 (44%), Gaps = 59/374 (15%)
Query: 172 DRVATLDARTQQQEVS----FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
DR+++ D ++ E+S R+L +VG++IGK G ++ ++ ++ A I++
Sbjct: 10 DRMSSSDNGLEETELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSTARITISEG--S 67
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
C ER+ T+T S R AV ++ +L E ++ + V RLV+ ++
Sbjct: 68 CPERITTITGSTDAVFR------AVSMIAFKLEEDLGTGAINGGTVSKPPVTLRLVIPAS 121
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
Q G L+GK G I E+R+ TG +++ D L + +R V +SG V DA+
Sbjct: 122 QCGSLIGKAGAKIKEIRETTGAQVQVAGDLLP---NSTERAVTVSG----VPDAIIQC-- 172
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMD 407
R +V+ E+ P A+ H ++++ P L
Sbjct: 173 ---------------VRQICAVILESPPKG-----ATIPYHPNLSLG-----PVLLSANQ 207
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+ S ++ Q ++G H S +G+ S GL+ S
Sbjct: 208 GFSMQGQYGGISQAEVAKLQQLSG-HPVSFSSLGQTPS-----IVAGLDTNS-------Q 254
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N++ E +VP ++IG + G GS + +RQ+SGA + + GS +R V I+GTP
Sbjct: 255 NSSQEFLVPNDLIGCIIGRQGSKISEIRQMSGAHIKIGNQTEGSAERHVTITGTPVSITL 314
Query: 528 AQSLLQAFILTGPS 541
AQ L+ A + T S
Sbjct: 315 AQYLISACLETAKS 328
>gi|449281891|gb|EMC88850.1| Poly(rC)-binding protein 3 [Columba livia]
Length = 330
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 155/358 (43%), Gaps = 51/358 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRAL----QSEAGAFISVGATMPECDERLITVTASEGP 241
++ R+L +VG++IGK ++L QS A IS G C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKVRMSFKSLPFSFQSGARINISEG----NCPERIVTIT---GP 66
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
KA ++ + E + + ++ V RLVV ++Q G L+GKGG+ I
Sbjct: 67 TDAIF---KAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIK 123
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 124 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 180
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R + S+ + ++ + A+ H D L H L +P
Sbjct: 181 RPKPASTPVI-------FAGGQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTP 223
Query: 422 KLWTAQTVTG-----VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
QT + L S + +Q L GL+ A +T E+ +P
Sbjct: 224 FTPLGQTTPAFPGEKLPLHSSEE-----AQNLMGQSSGLD-------ASPPASTHELTIP 271
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 272 NDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 329
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 121 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 153
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 153/349 (43%), Gaps = 60/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + ++ V LVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDIRSSMTNSTAASRPPVTLSLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQIFVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKL 423
+SS P F + + ++ QP LT+ + L + S
Sbjct: 183 SSS-------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAIQQS--------- 219
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H ++H G G A T+ E+ +P ++IG +
Sbjct: 220 ---------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIPNDLIGCI 255
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 256 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 304
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/274 (20%), Positives = 111/274 (40%), Gaps = 65/274 (23%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDART--QQQEVSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T + V+ ++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDIRSSMTNSTAASRPPVTLSLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTA--------------------SEGPESRYSPAQ 249
++ GA + V G +P ER IT+ +G Y P
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQIFVVMLESPPKGVTIPYRPKP 182
Query: 250 KAVVLVFS----RLIEGTS-----------------------------EKGLDFSSNKGL 276
+ ++F+ I+G GLD S+
Sbjct: 183 SSSPVIFAGGQAYTIQGQYAIPQPDLTKLHQLAIQQSHFPMTHGNTGFSAGLDASAQT-- 240
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
+ L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G +
Sbjct: 241 -TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVTITGSAA 295
Query: 337 KVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVL 370
+ A Y + RL + +G + ++ + SS++
Sbjct: 296 SISLAQYLINVRL--SLVTGGMGSSYNNADSSII 327
>gi|354475601|ref|XP_003500016.1| PREDICTED: poly(rC)-binding protein 2-like [Cricetulus griseus]
Length = 325
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 151/345 (43%), Gaps = 56/345 (16%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
R+L +VG++I K G ++ ++ E+GA S+ C ER+IT+ GP +
Sbjct: 17 RLLMHGKEVGSIIAKKGESVKKMREESGARTSISDG--NCPERIITLA---GPTNAIF-- 69
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
KA ++ +L EG S + ++ V RLVV ++Q G L+GKGG I E+R+ TG
Sbjct: 70 -KAFAMIIDKLEEGISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKEIRESTG 128
Query: 309 TSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-------HFSGTLNTA 361
+++ D L + + + I+G + + V + + + H G T
Sbjct: 129 AQVQVAGDMLP---NSTEWAITIAGIPQSLIECVKQICVVMLETLSQPPHPHPKGLTITY 185
Query: 362 RTRSTSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLT-QGMDHLGLSHSLD 416
R + +SS++ YS D ASF S+ ++ D PPL + L L S
Sbjct: 186 RPKPSSSLVIFAGGQDRYSTGSDSASFPHTTQSMCLNPDLEGPPLELTKLHQLALQQS-- 243
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
H ++H G G A T+ E+ +
Sbjct: 244 ----------------HFP------------MTHGNTGFSAG---LDASAQTTSHELTIS 272
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
++IG + G G+ + +RQ+SGA++ P GSTDR V I+G+
Sbjct: 273 NDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGS 317
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/354 (25%), Positives = 155/354 (43%), Gaps = 65/354 (18%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNT 360
E+R+ TG +++ D L + +R V ISG + V + + ++ G T+
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPRKGVTVVV 178
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
A +++ V+ ++ + A+ H P LT+ H L +
Sbjct: 179 APKPASTPVI--------FAGGQAYTIQGQYAIPH----PDLTK-------LHQLAMQQT 219
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P QT + G S S H E+ +P ++I
Sbjct: 220 PFPPLGQT------NPAFPAGLDASPPASTH--------------------ELTIPNDLI 253
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 254 GCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 307
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 154/358 (43%), Gaps = 84/358 (23%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGT------- 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL---LVNARLVVASNQVGCLLGKGGTIISE 302
A+ F+ + + E F+ + + RL+V ++Q G L+GK G+ I E
Sbjct: 75 ---TNAIFSAFTLITKKFEEWCSQFNDAGKIGKTQIPIRLIVPASQCGSLIGKSGSKIKE 131
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R+ TG SI++ S+ L + +R V +SG ++ +Y +
Sbjct: 132 IRQTTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQIC---------------- 172
Query: 363 TRSTSSVLTETSPYSRL-KDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
V+ E+ P S + K+P + +A + P T G++H +L
Sbjct: 173 -----LVMLESCPRSTVAKNPLASLAALGLAGMN----PASTGGINHTAALAAL------ 217
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
G LR ++ R Q H E+ V ++IG
Sbjct: 218 --------AGSQLRTANAANRAQQQ---QH--------------------EMTVSNDLIG 246
Query: 482 SVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ G+ G+ + +RQISGA + + E G+TDR + ISG PD AQ L+ I
Sbjct: 247 CIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLINMRI 304
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 150 LTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIR 209
+ A + I++ +A+ L+ R A R QQQ+ + SND +G +IGKGGT I
Sbjct: 200 MNPASTGGINHTAALAALAGSQLRTANAANRAQQQQHEMTV--SNDLIGCIIGKGGTKIA 257
Query: 210 ALQSEAGAFISVGATMPECDERL-----ITVTASEGPES 243
++ +GA I + C+ER T+T S P+S
Sbjct: 258 EIRQISGAMIRI----SNCEEREGGNTDRTITISGNPDS 292
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ +R LC K G++IGKGG I + ++SE + + + +P C+ER++T+ ++ +
Sbjct: 17 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 76
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSS---NKGLLVNARLVVASNQVGCLL 293
+ PA A+ V ++ + + V R++V S+Q+GC++
Sbjct: 77 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 136
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
GKGG +I +R T IR+I D L C +D ++ I GE V++A+Y V L D
Sbjct: 137 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 196
Query: 352 N 352
N
Sbjct: 197 N 197
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DAR E +C + VG VIGKGG I ++ E GA I V + + D+ +I +++
Sbjct: 240 DAR----EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISS 295
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
E E + SPA A + RL + SEK G D + L ++ RL+V+S+Q+GCL+GKG
Sbjct: 296 KEFYEDQ-SPAVNAAI----RLQQRCSEKVGKDAND---LAISTRLLVSSSQIGCLIGKG 347
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
G +ISEMR VT +IRI+ + + K E++ +VQI+G A+ V RLR N F
Sbjct: 348 GAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSF 406
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC 228
++Q V+ R+L +D++G VIGKGG +I+ L+++ A I V +P C
Sbjct: 117 EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPAC 164
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
++ +R LC K G++IGKGG I + ++SE + + + +P C+ER++T+ ++ +
Sbjct: 42 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 101
Query: 244 RY-------SPAQKAVVLVFSRLIEGTSEKGLDFSS---NKGLLVNARLVVASNQVGCLL 293
+ PA A+ V ++ + + V R++V S+Q+GC++
Sbjct: 102 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 161
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
GKGG +I +R T IR+I D L C +D ++ I GE V++A+Y V L D
Sbjct: 162 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 221
Query: 352 N 352
N
Sbjct: 222 N 222
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DAR E +C + VG VIGKGG I ++ E GA I V + + D+ +I +++
Sbjct: 265 DAR----EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISS 320
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
E E + SPA A + RL + SEK G D + L ++ RL+V+S+Q+GCL+GKG
Sbjct: 321 KEFYEDQ-SPAVNAAI----RLQQRCSEKVGKDAND---LAISTRLLVSSSQIGCLIGKG 372
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
G +ISEMR VT +IRI+ + + K E++ +VQI+G A+ V RLR N F
Sbjct: 373 GAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSF 431
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC 228
++Q V+ R+L +D++G VIGKGG +I+ L+++ A I V +P C
Sbjct: 142 EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPAC 189
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 173/366 (47%), Gaps = 51/366 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFI-----SVGATMPECDERLITVTASEGPE 242
FR++ KVG++IG+ G +I+ L E A + VGAT ER++ V+ E P+
Sbjct: 48 FRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGAT-----ERIVLVSGKEDPD 102
Query: 243 SRYSPAQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PA A++ VF R+ I + +G ++ + ARL+V Q L+GK G I
Sbjct: 103 LELPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCA-ARLLVPGAQAINLIGKQGATI 161
Query: 301 SEMRKVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRD---NHF 354
+++ T +IR+IS D+ + +++++R+V+I G+ KV A+ V+ LR +H
Sbjct: 162 KAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVDHS 221
Query: 355 SGTLNTARTRSTSSVLTETSPYSRLKDPA--SFGVHSSVAVSHDF----SQPPLTQGMDH 408
L +T +T S +S + P+ S V+ +V D+ + PL +
Sbjct: 222 VLPL-FEKTNTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLYLERES 280
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L + H+ +H G S GR LS + G+GS ++T
Sbjct: 281 L-VDHN-----------------IHRSGVSLYGR--DPALSTLRPSAVHGAGS---LLTQ 317
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQA 527
T + +P + G G+N+ +R SGA V + E LGS D I V I GT + QA
Sbjct: 318 ITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQA 376
Query: 528 AQSLLQ 533
AQ L+Q
Sbjct: 377 AQQLIQ 382
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 91/177 (51%), Gaps = 12/177 (6%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY-- 245
+R LC K G++IGKGG I + ++SE + + + +P C+ER++T+ ++ + +
Sbjct: 13 YRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGD 72
Query: 246 -----SPAQKAVVLVFSRLIEGTSEKGLDFSS---NKGLLVNARLVVASNQVGCLLGKGG 297
PA A+ V ++ + + V R++V S+Q+GC++GKGG
Sbjct: 73 DGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGG 132
Query: 298 TIISEMRKVTGTSIRIISDQLLKC--ISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+I +R T IR+I D L C +D ++ I GE V++A+Y V L DN
Sbjct: 133 QVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDN 189
Score = 82.0 bits (201), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 14/179 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DAR E +C + VG VIGKGG I ++ E GA I V + + D+ +I +++
Sbjct: 232 DAR----EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISS 287
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEK-GLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
E E + SPA A + RL + SEK G D + L ++ RL+V+S+Q+GCL+GKG
Sbjct: 288 KEFYEDQ-SPAVNAAI----RLQQRCSEKVGKDAND---LAISTRLLVSSSQIGCLIGKG 339
Query: 297 GTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
G +ISEMR VT +IRI+ + + K E++ +VQI+G A+ V RLR N F
Sbjct: 340 GAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSF 398
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC------DERLIT 234
++Q V+ R+L +D++G VIGKGG +I+ L+++ A I V +P C DE L+
Sbjct: 109 EKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLI 168
Query: 235 V 235
+
Sbjct: 169 I 169
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 173/366 (47%), Gaps = 51/366 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFI-----SVGATMPECDERLITVTASEGPE 242
FR++ KVG++IG+ G +I+ L E A + VGAT ER++ V+ E P+
Sbjct: 48 FRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGAT-----ERIVLVSGKEDPD 102
Query: 243 SRYSPAQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PA A++ VF R+ I + +G ++ + ARL+V Q L+GK G I
Sbjct: 103 LELPPAMDALMRVFKRVTGITDGAAEGTQAAATPDVCA-ARLLVPGAQAINLIGKQGATI 161
Query: 301 SEMRKVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRD---NHF 354
+++ T +IR+IS D+ + +++++R+V+I G+ KV A+ V+ LR +H
Sbjct: 162 KAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVDHS 221
Query: 355 SGTLNTARTRSTSSVLTETSPYSRLKDPA--SFGVHSSVAVSHDF----SQPPLTQGMDH 408
L +T +T S +S + P+ S V+ +V D+ + PL +
Sbjct: 222 VLPL-FEKTNTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLYLERES 280
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L + H+ +H G S GR LS + G+GS ++T
Sbjct: 281 L-VDHN-----------------IHRSGVSLYGR--DPALSTLRPSAVHGAGS---LLTQ 317
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQA 527
T + +P + G G+N+ +R SGA V + E LGS D I V I GT + QA
Sbjct: 318 ITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQA 376
Query: 528 AQSLLQ 533
AQ L+Q
Sbjct: 377 AQQLIQ 382
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/349 (25%), Positives = 159/349 (45%), Gaps = 60/349 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR- 364
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
S+S V+ ++L ++ S P+T G + G S
Sbjct: 183 SSSPVIFAGGQLTKLHQ-----------LAMQQSHFPMTHG--NTGFS------------ 217
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
G+ S +V W GL+ A T+ E+ +P ++IG +
Sbjct: 218 ------GIE-SSSPEVKGYW---------GLD-------ASAQTTSHELTIPNDLIGCII 254
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 255 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 303
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 104/248 (41%), Gaps = 55/248 (22%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTAS----------------EGPES------RYSP 247
++ GA + V G +P ER IT+ E P R P
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 248 AQKAVVLVFSRLIE----------------GTSEKGLDFSSNK-----GLLVNAR----- 281
+ V+ +L + T G++ SS + GL +A+
Sbjct: 183 SSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHE 242
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G + + A
Sbjct: 243 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSAASISLA 298
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 299 QYLINVRL 306
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 63/348 (18%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL 254
+VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP + KA +
Sbjct: 4 KEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAM 55
Query: 255 VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314
+ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++
Sbjct: 56 IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVA 115
Query: 315 SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETS 374
D L + +R + I+G + + V + + + T S S T
Sbjct: 116 GDMLP---NSTERAITIAGIPQSIIECVKQICVVMLE-----------TLSQSPPKGVTI 161
Query: 375 PYSRLK---DPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTV 429
PY R K P F + + ++ QP LT+ + L + S
Sbjct: 162 PY-RPKPSSSPVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS--------------- 204
Query: 430 TGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGS 489
H ++H G SG ++ T T+ E+ +P ++IG + G G+
Sbjct: 205 ---HFP------------MTHGNTGF---SGLDASAQT-TSHELTIPNDLIGCIIGRQGA 245
Query: 490 NLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
+ +RQ+SGA++ + P GSTDR V I+G+ AQ L+ L
Sbjct: 246 KINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSCL 293
>gi|356528013|ref|XP_003532600.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 167
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 94/157 (59%), Gaps = 10/157 (6%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA- 237
+R V+FR+LC +VGA+IGK G +I++LQ GA I + P+ +R+I V+A
Sbjct: 18 SRHYTTHVTFRLLCHASRVGAIIGKSGVLIKSLQEATGAKIRIVDAPPDSPDRVILVSAP 77
Query: 238 SEGPESRYSPAQKAVVLVFSRLIE--GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
S + S AQ+A++ VF R+++ +E G L+V+ RL+ ++QVG ++GK
Sbjct: 78 SVTEDGELSTAQEALLKVFDRVLDVAAGTEVG-------DLVVSCRLLAETSQVGAVIGK 130
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS 332
G ++ ++R TG IR++++ L + +D +V++S
Sbjct: 131 AGKVVEKIRMDTGCKIRVLNEGLPAGTAPSDEIVEVS 167
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 154/353 (43%), Gaps = 67/353 (18%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ VG++IGK G I+ + E+GA I++ ER++T+T S E+
Sbjct: 20 LTIRLIMQGKDVGSIIGKKGDTIKRFREESGARINISDG--SSPERIVTITGST--ENIL 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E ++ SS V RL+V ++Q G L+GKGG+ I E+R+
Sbjct: 76 ----KAFNMIGKKFEEDMKAAHVN-SSVPVPPVTLRLIVPASQCGSLIGKGGSKIKEIRE 130
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
VTG SI++ D L + +R V +SG + VY++ + ++ G
Sbjct: 131 VTGASIQVAGDMLP---NSTERAVTVSGTPDAISQCVYHICCVMLESPPKGA-------- 179
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
T PY PAS G +S V Q L H L +P +
Sbjct: 180 -------TIPYK--PRPAS-GTSTSGPVVFAGGQ---------LTKLHQLALQQTPYITP 220
Query: 426 AQTV-----TGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
T+ T ++ +S G SQ T E+ +P +I
Sbjct: 221 GTTLPAALATQFGVQTASQPGNPSSQ-----------------------THELTIPNELI 257
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
G + G+ G + +RQ SGA + + + GSTDR V I+GTP+ AQ L+
Sbjct: 258 GCIIGKGGCKINEIRQCSGATIKIAGMQEGSTDRQVTITGTPESISMAQFLIN 310
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 55/215 (25%)
Query: 170 ESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPEC 228
E + A +++ V+ R++ + G++IGKGG+ I+ ++ GA I V G +P
Sbjct: 87 EDMKAAHVNSSVPVPPVTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVAGDMLPNS 146
Query: 229 DERLITVTASEGPESRY----------SPAQKAVVLVFSRLIEGTSEKG-LDFSSNK--- 274
ER +TV+ + S+ SP + A + R GTS G + F+ +
Sbjct: 147 TERAVTVSGTPDAISQCVYHICCVMLESPPKGATIPYKPRPASGTSTSGPVVFAGGQLTK 206
Query: 275 --------------GLLVNA----------------------RLVVASNQVGCLLGKGGT 298
G + A L + + +GC++GKGG
Sbjct: 207 LHQLALQQTPYITPGTTLPAALATQFGVQTASQPGNPSSQTHELTIPNELIGCIIGKGGC 266
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
I+E+R+ +G +I+I Q DR V I+G
Sbjct: 267 KINEIRQCSGATIKIAGMQE----GSTDRQVTITG 297
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 43/354 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++GA I++ C ER++T
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREDSGARINISEG--NCPERIVTXXXXX------ 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 68 XXIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISGAPEAIIQCVKQICVVMLESPPKGATIPYRPKP 184
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG---MDHLGLS--HSLDCPSS 420
S+ + + R + + S+ + H QG + H LS H L +
Sbjct: 185 ASTPVIFSGGQVRADPLGASTANLSLLLQHQPLPAYTIQGQYAIPHPDLSKLHQLAMQQT 244
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
P QT G S S H E+ +P ++I
Sbjct: 245 PFTPLGQTTPAFP-------GLDASNQASTH--------------------ELTIPNDLI 277
Query: 481 GSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G + G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 278 GCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 331
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ L + ++ +GC++G+ GT I+E+R+++G I+I + ++
Sbjct: 258 GLDASNQAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSE 310
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRD 351
R + I+G + + A Y + R RD
Sbjct: 311 RQITITGTPANISLAQYLINARFRD 335
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 163/372 (43%), Gaps = 80/372 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT------ 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 76 SAIFAAFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 NTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + S+ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVSKNPLASLAALGLAGMTPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L+ + G LR +++ R Q H
Sbjct: 244 HTALA---------------ALAGSQLR-TANANRAQQQ---QH---------------- 268
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 269 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 324
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 325 VALAQYLINMRI 336
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 150 LTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIR 209
+T A + I++ +A+ L+ R A + R QQQ+ + SND +G +IGKGGT I
Sbjct: 234 MTPASTGGINH-TALAALAGSQLRTANAN-RAQQQQHEMTV--SNDLIGCIIGKGGTKIA 289
Query: 210 ALQSEAGAFISVGATMPECDERL-----ITVTASEGPES 243
++ +GA I + C+ER T+T S P+S
Sbjct: 290 EIRQISGAMIRIS----NCEEREGGNTDRTITISGNPDS 324
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 166/373 (44%), Gaps = 54/373 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
T V+ L + +F + + AV + P + GL + + P L
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQETCPVFPLALATGGLHAGISGLADPLL 243
Query: 424 WTAQTVTGV-----HLRGSSDVGR----------------GWSQGLSHHKGGLELGSGSK 462
A + HL+ DV + + G++H + +
Sbjct: 244 KGAHLQGAIPAHHHHLQQMPDVAKNPLASLAALGLAGMNPASTGGINH--------TANP 295
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVIS 519
+ E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + IS
Sbjct: 296 ANRAQQQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITIS 355
Query: 520 GTPDETQAAQSLL 532
G PD AQ L+
Sbjct: 356 GNPDSVALAQYLI 368
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 165/372 (44%), Gaps = 74/372 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H G + + + G LR ++ R Q H
Sbjct: 244 HTGSAPA----------ALAALAGSQLRTANPANRAQQQ---QH---------------- 274
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 275 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 330
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 331 VALAQYLINMRI 342
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R A R QQQ+ + SND +G +IGKGGT I ++ +GA I + C+ER
Sbjct: 261 RTANPANRAQQQQHEMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEERE 314
Query: 233 -----ITVTASEGPES 243
T+T S P+S
Sbjct: 315 GGNTDRTITISGNPDS 330
>gi|432906521|ref|XP_004077571.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 434
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 89/358 (24%), Positives = 151/358 (42%), Gaps = 69/358 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ ER++T+T GP
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTIT---GPT--- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
+ + FS + + E +N + V RLV +Q G L+GKGG+ I
Sbjct: 69 ----EGIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIK 124
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L +R V ISG + V ++ + ++ G
Sbjct: 125 EIRETTGAQVQVAGDMLP---DSTERAVTISGTPQAITQCVRHICSVMLESPPKGA---- 177
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
T PY PA G H+ +A H +H+ P
Sbjct: 178 -----------TIPYRPKILPA--GAHAVLAPQHS---------------AHAFAIPGQ- 208
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS-----AIVTNTTVEIIVP 476
+ Q +T +H Q H LG + + + + +T E+ +P
Sbjct: 209 YAFAHQDLTKLH------------QLAMQHIPLPSLGQSNPTFPGLDSSASTSTQELAIP 256
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
++IG + G GS + +RQ+SGA + + GS R V I+G+P AQ L+ A
Sbjct: 257 NDLIGCIIGRQGSKINEIRQVSGAHIKIASATDGSAVRQVTITGSPASISIAQYLINA 314
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLDAR--TQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ I ++ E D A + T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTEGIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P+ ER +T++ +
Sbjct: 122 KIKEIRETTGAQVQVAGDMLPDSTERAVTISGT 154
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 164/372 (44%), Gaps = 80/372 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMTPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L+ + G LR +++ R Q H
Sbjct: 244 HTALA---------------ALAGSQLR-TANANRAQQQ---QH---------------- 268
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 269 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 324
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 325 VALAQYLINMRI 336
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 127 FGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEV 186
+ +QE+ + + + + +T A + I++ +A+ L+ R A + R QQQ+
Sbjct: 211 YAVPTQEVAKNPLASLAALGLAGMTPASTGGINH-TALAALAGSQLRTANAN-RAQQQQH 268
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL-----ITVTASEGP 241
+ SND +G +IGKGGT I ++ +GA I + C+ER T+T S P
Sbjct: 269 EMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEEREGGNTDRTITISGNP 322
Query: 242 ES 243
+S
Sbjct: 323 DS 324
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 92/372 (24%), Positives = 163/372 (43%), Gaps = 78/372 (20%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H +L G LR ++ R Q H
Sbjct: 244 HTAALAAL--------------AGSQLRTANPANRAQQQ---QH---------------- 270
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 271 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 326
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 327 VALAQYLINMRI 338
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 127 FGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEV 186
+ +QE+ + + + + + A + I++ +A+ L+ R A R QQQ+
Sbjct: 211 YAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAALAGSQLRTANPANRAQQQQH 270
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL-----ITVTASEGP 241
+ SND +G +IGKGGT I ++ +GA I + C+ER T+T S P
Sbjct: 271 EMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEEREGGNTDRTITISGNP 324
Query: 242 ES 243
+S
Sbjct: 325 DS 326
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 149/343 (43%), Gaps = 64/343 (18%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL 254
+VG++IGK G I+ + E+GA I++ C ER++TVT S +A++
Sbjct: 2 QEVGSIIGKKGDNIKKFREESGAKINISDG--SCPERIVTVTGS----------TEAILK 49
Query: 255 VFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
FS + E SN L V RL+V ++Q G L+GKGG+ I E+R+ S
Sbjct: 50 AFSLIARKFEEVSTSSHSNGSHLPKPPVTLRLIVPASQCGSLIGKGGSKIKEIREAR-AS 108
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVL 370
I++ S+ L + +R V +SG + +Y + + ++ G R +
Sbjct: 109 IQVASEMLP---NSTERAVTVSGTADAITKCIYQICCVMMESPPKGATIPYRPK------ 159
Query: 371 TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVT 430
P ++ V A+ H P LT+ + L L H+ L +V
Sbjct: 160 -PAMPPVIFAGGQAYTVQGQYAIPH----PDLTK-LHQLALQHA-------PLLPGHSVG 206
Query: 431 GVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
++ + + A + TT E+ +P ++IG + G+ GS
Sbjct: 207 AINPQ-------------------------AAIATASTTTTEMTIPNDLIGCIIGKGGSK 241
Query: 491 LLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+ +RQ+SGA + + GS DR V ISGTP+ AQ L+
Sbjct: 242 INEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLIN 284
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
+ ++ +GC++GKGG+ I+E+R+++G +I+I + + DR V ISG + A Y
Sbjct: 226 IPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEE----GSKDRTVTISGTPEAINLAQY 281
Query: 344 ----------NVTGRLRDNHFSGT 357
N+T L NH + T
Sbjct: 282 LINTSMELHKNLTLDLTSNHPAST 305
>gi|344250764|gb|EGW06868.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 306
Score = 88.6 bits (218), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 56/338 (16%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
+VG++I K G ++ ++ E+GA S+ C ER+IT+ GP + KA ++
Sbjct: 5 EVGSIIAKKGESVKKMREESGARTSISDG--NCPERIITLA---GPTNAIF---KAFAMI 56
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+L EG S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++
Sbjct: 57 IDKLEEGISSSMTNSTAASRPPVALRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG 116
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-------HFSGTLNTARTRSTSS 368
D L + + + I+G + + V + + + H G T R + +SS
Sbjct: 117 DMLP---NSTEWAITIAGIPQSLIECVKQICVVMLETLSQPPHPHPKGLTITYRPKPSSS 173
Query: 369 VLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPLT-QGMDHLGLSHSLDCPSSPKL 423
++ YS D ASF S+ ++ D PPL + L L S
Sbjct: 174 LVIFAGGQDRYSTGSDSASFPHTTQSMCLNPDLEGPPLELTKLHQLALQQS--------- 224
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
H ++H G G A T+ E+ + ++IG +
Sbjct: 225 ---------HFP------------MTHGNTGFSAG---LDASAQTTSHELTISNDLIGCI 260
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
G G+ + +RQ+SGA++ P GSTDR V I+G+
Sbjct: 261 IGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGS 298
>gi|256083129|ref|XP_002577802.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230296|emb|CCD76467.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 368
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 97/403 (24%), Positives = 166/403 (41%), Gaps = 85/403 (21%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R + +V R L S G +IGKGG I+ ++ E SV T+P+ + ER++ +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREE----YSVKVTIPDSNGPERVLVLDG 58
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +V+ +F +E SN+ V+ RL+V +Q GC++G+ G
Sbjct: 59 DLG----------SVIEIFRENLE-------KMQSNRDDGVDLRLLVHQSQAGCVIGRAG 101
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-------- 349
I E+R+ +G + L C DRV+Q+ G+ KV D + ++ L
Sbjct: 102 YKIKELREQSGLHTLKVYQMLCPC--STDRVIQLVGDVGKVLDCLRSIAELLEGAPPKGS 159
Query: 350 RDNH------------FSG--------TLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
R N+ + G LN R+R+ +V + P++ + FG +
Sbjct: 160 RQNYDARNADEFISPEYGGWGVGNQGPGLNLVRSRN--NVANTSYPHNNILTTGIFGGGA 217
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-------- 441
S A + Q GL H+ TG G + G
Sbjct: 218 SGATGRNGGQTTSVSQALAGGLPHA-------SAAAMLAATGGQTTGGPNPGTAGDAAAA 270
Query: 442 -------RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRL 494
G +GL + + S + T+ ++ V +IG++ G +G + ++
Sbjct: 271 TAAAMVAAGLMRGLPNRM--------AMSILTPTTSTQVSVSNKMIGAIMGRSGCRINQV 322
Query: 495 RQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
R S A + + + G DRI+ I+GTP++ Q AQ LLQ + +
Sbjct: 323 RHESNADIKISKQEPGVEDRIITITGTPEQIQNAQFLLQMWYV 365
>gi|195377361|ref|XP_002047459.1| GJ11921 [Drosophila virilis]
gi|194154617|gb|EDW69801.1| GJ11921 [Drosophila virilis]
Length = 589
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 164/368 (44%), Gaps = 80/368 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMTPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H L+ + G LR +++ R Q H
Sbjct: 244 HTALA---------------ALAGSQLR-TANANRAQQQ---QH---------------- 268
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 269 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 324
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 325 VALAQYLI 332
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 127 FGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEV 186
+ +QE+ + + + + +T A + I++ +A+ L+ R A + R QQQ+
Sbjct: 211 YAVPTQEVAKNPLASLAALGLAGMTPASTGGINH-TALAALAGSQLRTANAN-RAQQQQH 268
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL-----ITVTASEGP 241
+ SND +G +IGKGGT I ++ +GA I + C+ER T+T S P
Sbjct: 269 EMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEEREGGNTDRTITISGNP 322
Query: 242 ES 243
+S
Sbjct: 323 DS 324
>gi|357146019|ref|XP_003573848.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 470
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 165/359 (45%), Gaps = 47/359 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD----ERLITVTASEGPES 243
FR++ + DKVG +IG+ G IR L E A + V + D ++++ ++A+E ++
Sbjct: 89 FRLVVAGDKVGGLIGRRGETIRRLCEETRARVRV---LDPADGVAGQQIVLISATEETQA 145
Query: 244 RYSPAQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+PA A + +F + IEG + + FS++ + +ARL+V Q L+GK G +I
Sbjct: 146 ELAPAMDAAIKIFKHVNEIEGIN-ASVTFSASAPEICSARLLVPKEQAAHLIGKQGIMIK 204
Query: 302 EMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT 360
+++ TG++IRII D LL ++R+V+I G K +A+ +V G LR ++
Sbjct: 205 SIQETTGSTIRIIDKDDLLNYRMVDERIVEILGASLKALNALKSVLGLLRKFLVDHSVLH 264
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSS 420
R ++ + +D + VS+D++ P+++ + L P S
Sbjct: 265 LFERKNQAI-------AHAQD-----ISKENQVSNDYAL-PVSRDL----LLSDGQSPLS 307
Query: 421 PKLWTAQTVTGVHLRGSSD--VGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
PK +L D V +S + H +++ T + +P
Sbjct: 308 PK-------GNRYLSYGRDPSVCDPYSSQIRH----------PTESLIKKITQTMKIPLP 350
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
+ G G N+ +R +SGA V++ E + +V I G+ + A L+Q +L
Sbjct: 351 QADEIIGVGGRNIAHIRSVSGAIVVLEETGDYLNEVLVTIQGSSSQVHTAHQLVQVILL 409
>gi|386771588|ref|NP_001246874.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
gi|383292064|gb|AFH04545.1| mushroom-body expressed, isoform I [Drosophila melanogaster]
Length = 539
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 160/368 (43%), Gaps = 78/368 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT------ 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A+ F+ LI E+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 76 ----NAIFSAFT-LITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 130
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 131 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 187
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 188 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 239
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H G + G LR ++ R Q H
Sbjct: 240 HTG----------SAPAALAALAGSQLRTANPANRAQQQ---QH---------------- 270
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 271 ----EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 326
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 327 VALAQYLI 334
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R A R QQQ+ + SND +G +IGKGGT I ++ +GA I + C+ER
Sbjct: 257 RTANPANRAQQQQ--HEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI----SNCEERE 310
Query: 233 -----ITVTASEGPES 243
T+T S P+S
Sbjct: 311 GGNTDRTITISGNPDS 326
>gi|281341834|gb|EFB17418.1| hypothetical protein PANDA_012445 [Ailuropoda melanoleuca]
Length = 320
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 92/341 (26%), Positives = 151/341 (44%), Gaps = 39/341 (11%)
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
G ++ ++ E+GA I++ C ER+IT+ GP + KA ++ +L E S
Sbjct: 3 GESVKKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMIIDKLEEDIS 54
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
+ ++ V RLVV ++Q G L+GKGG I E+R+V G +++ D L +
Sbjct: 55 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIREV-GAQVQVAGDMLP---NS 110
Query: 325 NDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSP---YSRLKD 381
+R + I+G + + V + + ++ G R + +SS + YS D
Sbjct: 111 TERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSD 170
Query: 382 PASFG-VHSSVAVSHDFSQPPL----TQGM-----DHLGLSHSLDCPSSPKLWTAQTVTG 431
ASF S+ ++ D PPL QG L H L S T
Sbjct: 171 SASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGF 230
Query: 432 VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNL 491
+ SS +G+ GL A T+ E+ +P ++IG + G G+ +
Sbjct: 231 SGIESSSPEVKGYWAGLD--------------ASAQTTSHELTIPNDLIGCIIGRQGAKI 276
Query: 492 LRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 277 NEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 317
>gi|256083125|ref|XP_002577800.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230298|emb|CCD76469.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 371
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 165/402 (41%), Gaps = 85/402 (21%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R + +V R L S G +IGKGG I+ ++ E SV T+P+ + ER++ +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREE----YSVKVTIPDSNGPERVLVLDG 58
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +V+ +F +E SN+ V+ RL+V +Q GC++G+ G
Sbjct: 59 DLG----------SVIEIFRENLE-------KMQSNRDDGVDLRLLVHQSQAGCVIGRAG 101
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-------- 349
I E+R+ +G + L C DRV+Q+ G+ KV D + ++ L
Sbjct: 102 YKIKELREQSGLHTLKVYQMLCPC--STDRVIQLVGDVGKVLDCLRSIAELLEGAPPKGS 159
Query: 350 RDNH------------FSG--------TLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
R N+ + G LN R+R+ +V + P++ + FG +
Sbjct: 160 RQNYDARNADEFISPEYGGWGVGNQGPGLNLVRSRN--NVANTSYPHNNILTTGIFGGGA 217
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-------- 441
S A + Q GL H+ TG G + G
Sbjct: 218 SGATGRNGGQTTSVSQALAGGLPHA-------SAAAMLAATGGQTTGGPNPGTAGDAAAA 270
Query: 442 -------RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRL 494
G +GL + + S + T+ ++ V +IG++ G +G + ++
Sbjct: 271 TAAAMVAAGLMRGLPNRM--------AMSILTPTTSTQVSVSNKMIGAIMGRSGCRINQV 322
Query: 495 RQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
R S A + + + G DRI+ I+GTP++ Q AQ LLQ +
Sbjct: 323 RHESNADIKISKQEPGVEDRIITITGTPEQIQNAQFLLQMCV 364
>gi|357137683|ref|XP_003570429.1| PREDICTED: RNA-binding protein Nova-1-like [Brachypodium
distachyon]
Length = 349
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/361 (25%), Positives = 159/361 (44%), Gaps = 73/361 (20%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 42 KEKPTHLRFLVSNTAAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 100
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ LV +L+ +G +F+ + RLVV ++ G ++GKGG
Sbjct: 101 -----LFDEVIKAMELVLEKLL----AEGEEFNEAEA-RPKFRLVVPNSSCGGIIGKGGA 150
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V I+G F+ A+Y + +L D H+
Sbjct: 151 TIKAFIEDSHAGIK-ISPQDNNFVGLHDRLVTITGPFNNQMRAIYLILSKLSEDVHYPPN 209
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
L++ PY+ L P+ + V V + Q P +++
Sbjct: 210 LSS------------PFPYAGLGFPS---YPAPVPVGYMIPQVPYNNAVNY--------- 245
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE---II 474
P G+ ++K G + S + TN E I
Sbjct: 246 --GPN--------------------GYGGRYQNNKPGTPVRSPA-----TNDAQESHTIG 278
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSL 531
V + IG+V G G N+ + Q SGA++ + + G++DR V I+GTP+ QAA+S+
Sbjct: 279 VADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSDRKVTITGTPEAIQAAESM 338
Query: 532 L 532
+
Sbjct: 339 I 339
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 153/357 (42%), Gaps = 52/357 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
VT +++ L S + +S K Y F+G + T S
Sbjct: 126 VTEAALK---PYLFLFFSP----LTLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGS 178
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL----TQG-----MDHLGLSHSLD 416
S+ T+P S+ ++ D PPL QG L H L
Sbjct: 179 DSASFPHTTP--------------SMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLA 224
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVP 476
S T + SS +G+ GL A T+ E+ +P
Sbjct: 225 MQQSHFPMTHGNTGFSGIESSSPEVKGYWAGL--------------DASAQTTSHELTIP 270
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
++IG + G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 271 NDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 327
Score = 38.9 bits (89), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 267 GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
GLD S+ + L + ++ +GC++G+ G I+E+R+++G I+I + D
Sbjct: 255 GLDASAQT---TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTD 307
Query: 327 RVVQISGEFSKVKDAVYNVTGRL 349
R V I+G + + A Y + RL
Sbjct: 308 RQVTITGSAASISLAQYLINVRL 330
>gi|410900550|ref|XP_003963759.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 434
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 153/350 (43%), Gaps = 53/350 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ ER++T+T + E+ +
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTITGAT--EAIF 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+A ++ + E S + S V RLV +Q G L+GKGG+ I E+R+
Sbjct: 73 ----RAFAMIAQKFEEDISAAMSNSSVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L +R V ISG + V ++ + ++ G
Sbjct: 129 TTGAQVQVAGDMLPD---STERAVTISGTPQAITQCVRHICSVMLESPPKGA-------- 177
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT 425
T PY R K + GVH+ +A +H+ P +
Sbjct: 178 -------TIPY-RPKA-VTVGVHAVLAPQQS---------------AHAFAIPGQ-YTFA 212
Query: 426 AQTVTGVHLRGSSDVGRGWSQGLSHHK-GGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
Q +T +H + S G S+ GL+ + + S E+ +P + IG +
Sbjct: 213 HQDLTKLHQLAMQHIPL-PSLGQSNPTFPGLDPSAPTSSQ-------EMAIPNDFIGCII 264
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G GS + +RQ+SGA + + GS R V I+G+P AQ L+ A
Sbjct: 265 GRQGSKINEIRQVSGAHIKIASTTDGSAVRQVTITGSPASINVAQYLINA 314
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 83/283 (29%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMP------------- 226
T + V+ R++ + G++IGKGG+ I+ ++ GA + V G +P
Sbjct: 96 TSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQVQVAGDMLPDSTERAVTISGTP 155
Query: 227 ----ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFS----------- 271
+C + +V P+ P + V V + + F+
Sbjct: 156 QAITQCVRHICSVMLESPPKGATIPYRPKAVTVGVHAVLAPQQSAHAFAIPGQYTFAHQD 215
Query: 272 -------------------SNK---GLLVNA-----RLVVASNQVGCLLGKGGTIISEMR 304
SN GL +A + + ++ +GC++G+ G+ I+E+R
Sbjct: 216 LTKLHQLAMQHIPLPSLGQSNPTFPGLDPSAPTSSQEMAIPNDFIGCIIGRQGSKINEIR 275
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-------------- 350
+V+G I+I S + R V I+G + + A Y + L
Sbjct: 276 QVSGAHIKIASTTDGSAV----RQVTITGSPASINVAQYLINASLEMAKYTMQAASSATP 331
Query: 351 ---DNHFSGTLNTARTRSTS-SVLTETSPYSRLKDPASFGVHS 389
+ FS + TA T +TS +VL +P P + VHS
Sbjct: 332 VDLNLGFSQSAPTASTAATSMAVLAAANP-----APTTINVHS 369
>gi|256083127|ref|XP_002577801.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230297|emb|CCD76468.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 363
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/399 (24%), Positives = 164/399 (41%), Gaps = 85/399 (21%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R + +V R L S G +IGKGG I+ ++ E SV T+P+ + ER++ +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREE----YSVKVTIPDSNGPERVLVLDG 58
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +V+ +F +E SN+ V+ RL+V +Q GC++G+ G
Sbjct: 59 DLG----------SVIEIFRENLE-------KMQSNRDDGVDLRLLVHQSQAGCVIGRAG 101
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-------- 349
I E+R+ +G + L C DRV+Q+ G+ KV D + ++ L
Sbjct: 102 YKIKELREQSGLHTLKVYQMLCPC--STDRVIQLVGDVGKVLDCLRSIAELLEGAPPKGS 159
Query: 350 RDNH------------FSG--------TLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
R N+ + G LN R+R+ +V + P++ + FG +
Sbjct: 160 RQNYDARNADEFISPEYGGWGVGNQGPGLNLVRSRN--NVANTSYPHNNILTTGIFGGGA 217
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-------- 441
S A + Q GL H+ TG G + G
Sbjct: 218 SGATGRNGGQTTSVSQALAGGLPHA-------SAAAMLAATGGQTTGGPNPGTAGDAAAA 270
Query: 442 -------RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRL 494
G +GL + + S + T+ ++ V +IG++ G +G + ++
Sbjct: 271 TAAAMVAAGLMRGLPNRM--------AMSILTPTTSTQVSVSNKMIGAIMGRSGCRINQV 322
Query: 495 RQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
R S A + + + G DRI+ I+GTP++ Q AQ LLQ
Sbjct: 323 RHESNADIKISKQEPGVEDRIITITGTPEQIQNAQFLLQ 361
>gi|390347463|ref|XP_792931.3| PREDICTED: poly(rC)-binding protein 3-like [Strongylocentrotus
purpuratus]
Length = 369
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 31/260 (11%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V+ RL+V ++Q G L+GKGG+ I ++R+ T SI + S+ L S +R V ISG
Sbjct: 18 VSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASEML---PSSTERAVTISGTPEA 74
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTR-STSSVLTETSPYS----RLKDPASFGVHSSVA 392
+ A+Y V + ++ G R + +T+ ++ S L ++ VH + A
Sbjct: 75 ITKAIYQVCCVMLESPPKGATIPYRPKPATAPIIFAGGSVSMTEQHLHQQQAYAVHGNYA 134
Query: 393 VSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
+QP LT+ L L H + P + QG +
Sbjct: 135 ----LAQPDLTKLHHQLALHHQQTPYAIPGQTPFSPAALTQFAAQTAAPPPQVQGQA--- 187
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
TT EI +P ++IG V G G+ + +RQ+SGA + + + GST
Sbjct: 188 ----------------TTQEITIPNHLIGCVIGRGGTKIQEIRQMSGANIKIANSQEGST 231
Query: 513 DRIVVISGTPDETQAAQSLL 532
DR V I+G+P+ AQ L+
Sbjct: 232 DRSVTITGSPESVAVAQCLI 251
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+G + + ++ +GC++G+GGT I E+R+++G +I+I + Q DR V I+G
Sbjct: 184 QGQATTQEITIPNHLIGCVIGRGGTKIQEIRQMSGANIKIANSQE----GSTDRSVTITG 239
Query: 334 EFSKVKDA 341
V A
Sbjct: 240 SPESVAVA 247
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-PECDERLITV 235
L T + VS R++ + G++IGKGG+ I+ ++ A I+V + M P ER +T+
Sbjct: 9 LSPGTPKPPVSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITVASEMLPSSTERAVTI 68
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIE 261
+ + PE+ KA+ V ++E
Sbjct: 69 SGT--PEA----ITKAIYQVCCVMLE 88
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 1/166 (0%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E+ A I + P ER + ++A + P++
Sbjct: 107 ESVFRILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMISAKDEPDAP 166
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA + V+ R+ +G+ N + RL+V ++Q G L+GK G I ++
Sbjct: 167 ISPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPTRLLVPASQAGSLIGKQGATIKSIQ 226
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +RI+ L ++ +DRVV+I GE V+ A+ ++ LR
Sbjct: 227 DSSKSIVRIVETLPLVALN-DDRVVEIQGEPVGVQKALESIASHLR 271
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 2/167 (1%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A + P+S
Sbjct: 84 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKDEPDSA 143
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ PA ++ V R+++G E + N G V+ RL+VA++Q G L+GK G + ++
Sbjct: 144 FPPAVDGLLRVHKRIVDGL-EGDNAHAPNAGSKVSTRLLVAASQAGSLIGKQGGTVKSIQ 202
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L + ++DRVV++ G+ + V AV + LR
Sbjct: 203 EESNCIVRVLGSEDLPVFALQDDRVVEVLGDPAGVHKAVELIASHLR 249
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 2/89 (2%)
Query: 454 GLELGSGSKSA--IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS 511
G+ S ++SA IVT TT ++ +P + +V G G+++ +R+ SGA V + E R
Sbjct: 346 GVHAASNAQSAPSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQETRGVP 405
Query: 512 TDRIVVISGTPDETQAAQSLLQAFILTGP 540
+ V +SGT + QAAQ L+QA I + P
Sbjct: 406 GEMTVEMSGTASQVQAAQQLIQAIIFSSP 434
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 2/167 (1%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A + P+S
Sbjct: 84 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKDEPDSA 143
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ PA ++ V R+++G E + N G V+ RL+VA++Q G L+GK G + ++
Sbjct: 144 FPPAVDGLLRVHKRIVDGL-EGDNAHAPNAGSKVSTRLLVAASQAGSLIGKQGGTVKSIQ 202
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L + ++DRVV++ G+ + V AV + LR
Sbjct: 203 EESNCIVRVLGSEDLPVFALQDDRVVEVLGDPAGVHKAVELIASHLR 249
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 454 GLELGSGSKSA--IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS 511
G+ S ++SA IVT TT ++ +P + +V G G+++ +R+ SGA V + E R
Sbjct: 346 GVHAASNAQSAPSIVTQTTQQMQIPLSFADAVIGTAGASISYIRRASGATVTIQETRGVP 405
Query: 512 TDRIVVISGTPDETQAAQSLLQAFI 536
+ V +SGT + QAAQ L+Q F+
Sbjct: 406 GEMTVEMSGTASQVQAAQQLIQNFM 430
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 151/358 (42%), Gaps = 55/358 (15%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+ R+L + GAVIGKGG I+ L++E A +++ + + ER++T+ A
Sbjct: 37 KYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDS--QTPERIVTIVAE------ 88
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ V + RL E + D + RL+V + G ++G+GG I E+R
Sbjct: 89 IDNVIRCVNEIIPRLDECLKTRDSDDEGSARGESELRLLVHQSHAGAIIGRGGYRIKELR 148
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ T T +++ S C +RV+QI G K+ V + L++ G
Sbjct: 149 EETSTQLKVYSQ---CCPQSTERVIQIIGVPEKIIACVILIINMLKEIPIKGP------- 198
Query: 365 STSSVLTETSPY-SRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ PY S DP + ++ GM GL P +P+
Sbjct: 199 --------SRPYESMFYDPNFVHEYGGFPPDRNYRGMGPRGGMYGGGLP-----PRAPRF 245
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
GRG G+S T ++ +P + G++
Sbjct: 246 PYG--------------GRGMGMGVSPFP--------PAPFGGPMQTTQVTIPNELGGTI 283
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
G+ G + R+R+ SGA ++V EP+ +++RI+ ISG+ + Q AQ LLQ +I+ P+
Sbjct: 284 IGKGGERINRIREESGAHIVV-EPQQPNSERIITISGSHAQIQTAQYLLQQWIVRFPN 340
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 92/168 (54%), Gaps = 9/168 (5%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG +IG+ G +I+ L E A + V +R+I ++ E E+ SP
Sbjct: 72 FRLIVPVGKVGGIIGRKGDLIKKLCDETKARVRVLDADLGIPDRIILISGKEELEAAISP 131
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKG----LLVNARLVVASNQVGCLLGKGGTIISEM 303
A AV+ +F R + G SE S NKG L + RL+VAS Q L+GK GTII +
Sbjct: 132 AMDAVIRIFKR-VSGLSETD---SENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSI 187
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++ +G S+R++S D++ + +R+V + GE V A+ V G LR
Sbjct: 188 QESSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLR 235
Score = 38.5 bits (88), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPD 523
IVT + +P + + G G+N+ +R+ SGA + V E R+ D IVV I GT
Sbjct: 333 IVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRV--PDEIVVEIKGTTS 390
Query: 524 ETQAAQSLLQAFI 536
+ Q AQ L+Q I
Sbjct: 391 QVQTAQQLIQEVI 403
>gi|348507477|ref|XP_003441282.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 434
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/361 (24%), Positives = 149/361 (41%), Gaps = 75/361 (20%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ ER++T+T GP
Sbjct: 17 LTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--SSPERIVTIT---GPT--- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
+ + FS + + E +N + V RLV +Q G L+GKGG+ I
Sbjct: 69 ----EGIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIK 124
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L +R V ISG + V ++ + ++ G
Sbjct: 125 EIRETTGAQVQVAGDMLP---DSTERAVTISGTPQAITQCVRHICSVMLESPPKGA---- 177
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHD---FSQPPLTQGMDHLGLSHSLDCP 418
T PY PA G H+ +A H F+ P +H
Sbjct: 178 -----------TIPYRPKVIPA--GTHAVLAPQHSAQAFAIP------GQYAFAH----- 213
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS-----AIVTNTTVEI 473
Q +T +H Q H LG + + A ++ E+
Sbjct: 214 --------QDLTKLH------------QLAMQHIPLPSLGQSNPTFPGLDASAPTSSQEL 253
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+P + IG + G GS + +RQ+SGA + + GS R V I+G+P AQ L+
Sbjct: 254 AIPNDFIGCIIGRQGSKINEIRQVSGAHIKIASATDGSAMRQVTITGSPASISVAQYLIN 313
Query: 534 A 534
A
Sbjct: 314 A 314
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLDAR--TQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ I ++ E D A + T + V+ R++ + G++IGKGG+
Sbjct: 62 VTITGPTEGIFRAFSMIAQKFEEDITAAMTNSNVTSKPPVTLRLVFPGSQCGSLIGKGGS 121
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P+ ER +T++ +
Sbjct: 122 KIKEIRETTGAQVQVAGDMLPDSTERAVTISGT 154
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/369 (24%), Positives = 175/369 (47%), Gaps = 43/369 (11%)
Query: 174 VATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC 228
+AT+D++ + ++ R+L + +VG++IGK G I++ + E+GA I++ C
Sbjct: 1 MATVDSKGLPHDAPSVTLTIRLLMAGKEVGSIIGKKGEIVKRFREESGARINISDG--SC 58
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKG--LDFSSNKGLLVNARLVVAS 286
ER++T+T + ++ + KA L+ +L E E G L ++ + RL++ +
Sbjct: 59 PERIVTITGTT--DAIF----KAFNLICKKLEE---EVGGPLAGTAIPRPPITLRLIMPA 109
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
+Q G L+GKGG+ I E+R++TG S+ + S+ L + +R V +SG + +Y++
Sbjct: 110 SQCGSLIGKGGSKIKEIREITGASVVVASEMLP---NSTERAVTVSGTSDAITQCIYHIC 166
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
+ ++ G R P ++ P + + +++ P T M
Sbjct: 167 CVMLESPPKGATIPYR------------PKPQVGGPVILAGGQAYTIQGNYAV-PATPDM 213
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
+ L + + + T G + S+ SQ S GG + G+ +S
Sbjct: 214 NKLSGNPLANLAALGLGGLTGTGGGGSMNASALAALAGSQLRSGGGGGPQSGAPQQSQ-- 271
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH--EPRLGSTDRIVVISGTPDE 524
E+ VP +IG + G+ G+ + +RQISGA + + E R S++R + I+GT +
Sbjct: 272 -----EMAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRESSSERTITITGTAES 326
Query: 525 TQAAQSLLQ 533
AQ L+
Sbjct: 327 VALAQYLIN 335
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IRI + + + S ++R + I+G V A
Sbjct: 273 MAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRE--SSSERTITITGTAESVALA 330
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 331 QYLINTRL 338
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG +IG+ G I+ L E A I + P ER + V+A E P++
Sbjct: 39 ENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAP 98
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+PA ++ V +++ S D S G++V+ RL+V + Q G L+GK G I ++
Sbjct: 99 IAPAIDGLLRVHKCIMDVES----DVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L +ND VV+I GE + V AV + LR
Sbjct: 155 EASNCIVRVLGENLPLFALQNDTVVEIQGEPASVHKAVELIASNLR 200
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 47/358 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + ++GA I++ C ER++TVT +
Sbjct: 12 LTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDG--SCPERIVTVTGTT------ 63
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ + F+ + + E + + V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 64 ----ECIHKAFTMICKKFEEDLQNTPTVPKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 119
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG + + N+ + ++ G R +
Sbjct: 120 TTGASIQVASEMLP---NSTERAVTVSGTADAITLCIQNICSIMLESPPKGATIQYRPKP 176
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM-----DHLGLSHSLDCPSS 420
+ P F A ++ P QG+ + LG+ ++
Sbjct: 177 -------------VVPPVIF------AGGQAYTVPGQMQGVQASEKERLGIPK-MELSKL 216
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGS------KSAIVTNTTVEII 474
+L Q + + S + + GL H + + TT E+
Sbjct: 217 HQLSLGQPIPIIPCT-SPQLIQATMPGLPHMAAAYPRATNTVPQALPAQPQQQQTTTEMA 275
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P ++IG + G G + +RQ+SGA + + G+ DR V I+GTP+ AQ L+
Sbjct: 276 IPNDLIGCIIGRGGQKINEIRQMSGAMIKISNAEEGAPDRKVTITGTPETIGLAQYLI 333
>gi|147789387|emb|CAN73316.1| hypothetical protein VITISV_043333 [Vitis vinifera]
Length = 511
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 22/177 (12%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV-------T 236
++ +R LC K+G++I +G I++ + + IS+G T+ C+E ++T+
Sbjct: 290 KDTIYRYLCPGKKIGSIIRRGWKIVKQQRVDTKPKISIGDTVSGCEEHVVTIYNFSIESN 349
Query: 237 ASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
+ + SP Q + V R+I V+ ++Q+GC++GKG
Sbjct: 350 VFDNSNTFVSPTQNVLFRVHDRVISDE--------------VHDENFEEASQIGCVIGKG 395
Query: 297 GTIISEMRKVTGTSIRIISDQLLKC-ISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G II +R +G IRI+ D L + +D+++QISGE S V A+Y + RL DN
Sbjct: 396 GQIIQSIRSESGAQIRILKDDHLPSRVLSSDKLIQISGEPSLVMKALYQIASRLHDN 452
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 111/207 (53%), Gaps = 14/207 (6%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G I+ ++ + A I + + +ER+I +++ +
Sbjct: 96 RAKGQDVIFRIVVPSRQIGKVIGKEGHRIQKIREDTKATIKIADAIARHEERVIIISSKD 155
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
E + + A+KA+ + + LI + LD S V A RL++A +Q G L+G
Sbjct: 156 NDE-KVTDAEKALEQI-AHLILKEDDSSLDASKVTAGHVAANTIRLLIAGSQAGGLIGMS 213
Query: 297 GTIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN- 352
G I ++R +G SI +++ +QL C S E+DRVVQ+SG+ V A+ + +LR+N
Sbjct: 214 GQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGDVPAVMKALEEIGCQLRENP 273
Query: 353 -----HFSGTLNTARTRSTSSVLTETS 374
S T N A R + L TS
Sbjct: 274 PRQVISISPTYNYAAIRPSQPYLDPTS 300
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 172/366 (46%), Gaps = 51/366 (13%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFI-----SVGATMPECDERLITVTASEGPE 242
FR++ KVG++IG+ G +I+ L E A + VGAT ER++ V+ E P+
Sbjct: 48 FRLVVPVLKVGSIIGRKGELIKRLVEETKARVRILEGPVGAT-----ERIVLVSGKEDPD 102
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL--LVNARLVVASNQVGCLLGKGGTII 300
PA A++ VF + + G ++ + + + ARL+V Q L+GK G I
Sbjct: 103 LELPPAMDALMRVF-KXVTGITDGAAEXTQAAATPDVCAARLLVPGAQAINLIGKQGATI 161
Query: 301 SEMRKVTGTSIRIIS-DQLLK--CISENDRVVQISGEFSKVKDAVYNVTGRLRD---NHF 354
+++ T +IR+IS D+ + +++++R+V+I G+ KV A+ V+ LR +H
Sbjct: 162 KAIQESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVDHS 221
Query: 355 SGTLNTARTRSTSSVLTETSPYSRLKDPA--SFGVHSSVAVSHDF----SQPPLTQGMDH 408
L +T +T S +S + P+ S V+ +V D+ + PL +
Sbjct: 222 VLPL-FEKTNTTVSQDRNGDGWSDMSRPSIGSAQVNQLPSVLDDYILQVKRDPLYLERES 280
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
L + H+ +H G S GR LS + G+GS ++T
Sbjct: 281 L-VDHN-----------------IHRSGVSLYGR--DPALSTLRPSAVHGAGS---LLTQ 317
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGTPDETQA 527
T + +P + G G+N+ +R SGA V + E LGS D I V I GT + QA
Sbjct: 318 ITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQE-SLGSPDDITVEIKGTSSQVQA 376
Query: 528 AQSLLQ 533
AQ L+Q
Sbjct: 377 AQQLIQ 382
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G+ I+ ++ E A I + + +ER+I ++ S+
Sbjct: 54 RAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIIS-SK 112
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV-NA-RLVVASNQVGCLLGKGG 297
E+ S A+ A++ V S +++ G +V NA RL++A +Q GCL+G G
Sbjct: 113 DSENVISDAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSG 172
Query: 298 TIISEMRKVTGTSIRII-SDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I ++R +G +I I+ +QL C S ++DR+VQISG+ V A+ + +LR+N
Sbjct: 173 QNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLREN 230
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 117/295 (39%), Gaps = 63/295 (21%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK------CISENDR------- 327
R+VV S Q+G ++GK G+ I ++R+ T +I+ I+D + + IS D
Sbjct: 63 RIVVPSRQIGKVIGKEGSRIQKIREETKATIK-IADAIARHEERVIIISSKDSENVISDA 121
Query: 328 ---VVQISGEFSKVKDA------------VYNVTGRLRDNHFSGTL------NTARTRST 366
++Q++ K D+ V N L +G L N + R++
Sbjct: 122 ENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKLRNS 181
Query: 367 SSVLTETSPYSRLKDPASFGVHSS---VAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
S P ++L P H S V +S D P + + ++ +G + P
Sbjct: 182 SGATITILPQNQL--PLCASAHDSDRMVQISGDV--PAVLKALEEIGCQLRENPP----- 232
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
+ V + + + R Q L A T+ +++PE ++G +
Sbjct: 233 ---RQVISISPIYNPNTNRTSQQYLD-------------PASADYVTLNMMIPETLVGGL 276
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
G GSN+ R+R SGA + V+ + R + G+ + A+ + +I +
Sbjct: 277 IGRCGSNISRIRNESGAMIKVYGGKGEQNHRQIQFGGSAQQVALAKQRVDEYIYS 331
>gi|147789222|emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
Length = 587
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 94/164 (57%), Gaps = 15/164 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA-------- 237
V+FR+LC ++G VIGK G I++ LQS+ GA I V + D R+I V A
Sbjct: 51 VAFRLLCHASRIGGVIGKSGVIVKQLQSDTGARIRVEDSPSTSDHRVILVIAPASVNRRI 110
Query: 238 ---SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
E S AQ+AV+ VF R++E + +D G +V+ RL+ ++QVG ++G
Sbjct: 111 ALQGSSEEVEASAAQEAVLRVFERILEVAAV--VD-GVPPGGVVSCRLLAETSQVGSVIG 167
Query: 295 KGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEFSK 337
KGG ++ ++R+ +G+ I+++ +++L C + D +V+ SG +
Sbjct: 168 KGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVEHSGSLER 211
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 86/327 (26%), Positives = 142/327 (43%), Gaps = 28/327 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L S+ KVGA+IG+ G +R L E A + V ER++ + A E P+ P
Sbjct: 64 FRMLISSTKVGAIIGQKGERVRRLCEETKASVRVIGGHFAAAERVVLIFAKEQPDEPIPP 123
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A A++ V+ ++ ++ GL S+ ++ R+++ S Q L+G+ G++I+ + + +
Sbjct: 124 AMDALLRVYQNIV---NDDGLGMGSDSAVVT--RILIPSEQALNLIGEQGSMINLIEEAS 178
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR----DNHFSGTLNTART 363
T IR++ L + DR+V+I G+ ++V+ A+ V LR D +
Sbjct: 179 QTDIRVLDCNLPPAALDEDRIVEIWGQPTRVRKALELVARHLRKYLVDRSVIPLFDPHVP 238
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+TS V T YS + SSV QPP T G H ++ +
Sbjct: 239 MTTSHVDTSPCYYSDHPE-GPLQAISSVYAEDLHRQPPWTDSCYPRGRYH-VETDVTGYR 296
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQ--------------GLSHHKGGLELGSGSKSAIVTNT 469
W A T G + + + Q GLS H GS S I T+
Sbjct: 297 WEAPTCFGRYRSVTPPCMGAYRQETSSPMEAYLSAPMGLSSHHNLTSYGSQSTPPIGTSA 356
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQ 496
E I + SVYG+ + ++ Q
Sbjct: 357 AAERI---RSLISVYGQQTHPVGKVYQ 380
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G+ I+ ++ E A I + + +ER+I ++ S+
Sbjct: 54 RAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIIS-SK 112
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV-NA-RLVVASNQVGCLLGKGG 297
E+ S A+ A++ V S +++ G +V NA RL++A +Q GCL+G G
Sbjct: 113 DSENVISDAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSG 172
Query: 298 TIISEMRKVTGTSIRII-SDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I ++R +G +I I+ +QL C S ++DR+VQISG+ V A+ + +LR+N
Sbjct: 173 QNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLREN 230
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG +IG+ G I+ L E A I + P ER + V+A E P++
Sbjct: 39 ENVFRMLIPVQKVGYIIGRKGEHIKKLSEETKARIKILDGPPGTSERAVMVSAKEEPDAP 98
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+PA ++ V +++ S D S G++V+ RL+V + Q G L+GK G I ++
Sbjct: 99 IAPAIDGLLRVHKCIMDVES----DVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQ 154
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L +ND VV+I GE + V AV + LR
Sbjct: 155 EASNCIVRVLGENLPLFALQNDTVVEIQGEPASVHKAVELIASNLR 200
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E A I + P ER + ++A + P++
Sbjct: 120 ESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDEPDAP 179
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA ++ V R+ + ++ + + G + RL+V S+Q G L+GK G I ++
Sbjct: 180 LSPAVDGLLRVHKRITDSSNGESGQLQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQ 239
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +RI+ + + +DRVV+I GE V+ AV + LR
Sbjct: 240 DSSKSVVRIVEN-VPPVALNDDRVVEIQGEPLGVQKAVELIASHLR 284
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 159/368 (43%), Gaps = 77/368 (20%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS 238
R+ + R+L ++ GAVIGKGG I+ L+S+ A +++ ++ PE R++ ++ +
Sbjct: 276 RSGHEGPELRLLIASKSAGAVIGKGGENIKRLRSQYCASVNIPDSSTPE---RVLNISCA 332
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ V + RL +G S R++V +Q G ++G+ G
Sbjct: 333 N-----VATLTDCVSDLIPRLDDGKSGPQE---------AEVRMLVHQSQAGAIIGRAGF 378
Query: 299 IISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I E+R +TG IR+ S+ C +RV+Q SG+ K+ +A+ +V + G
Sbjct: 379 KIKELRDITGAGIRVYSE----CAPLSTERVIQFSGDKEKIVNAIRHVKEICEETPIKGV 434
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
RL D ++ ++ +D+ G
Sbjct: 435 -------------------ERLYDANNYD---------------MSYALDYGGY------ 454
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE-------LGSGSKSAIVTN-- 468
++ + W + + T R SS + + H G+ LG S N
Sbjct: 455 -TTDRNWRSNSTT----RRSSGIHSSSPAASTPHFTGVNEISPMQALGYSPMSLYAENLI 509
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TV++ +P+ + G++ G+ G + R+R+ SGA+++V P S +RI+ ISGT + +
Sbjct: 510 ATVQVTIPKELGGTIIGKGGERINRIREESGAQIVVDPPTPDSDERIITISGTTSQIKLG 569
Query: 529 QSLLQAFI 536
Q LLQ I
Sbjct: 570 QYLLQQCI 577
>gi|7486302|pir||T04533 hypothetical protein F28J12.30 - Arabidopsis thaliana
gi|2832642|emb|CAA16717.1| putative protein [Arabidopsis thaliana]
gi|7268630|emb|CAB78839.1| putative protein [Arabidopsis thaliana]
Length = 846
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 103/190 (54%), Gaps = 38/190 (20%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTAS 238
++ +E+ F++LC + VIGKGG+ I+ ++ +G+ I V + +C DE +I VTA+
Sbjct: 615 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 674
Query: 239 E--------------GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVV 284
E P+ S A +AV+L+ + + +E V +L+V
Sbjct: 675 EILFCCLSTPFVFMQSPDDMKSMAVEAVLLLQEYINDEDAEN-----------VKMQLLV 723
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS--ENDRVVQISGEFSKVKDAV 342
+S +GC++GK G++I+E+RK T +I CIS + D +V++SGE S V+DA+
Sbjct: 724 SSKVIGCVIGKSGSVINEIRKRTNANI---------CISKGKKDDLVEVSGEVSSVRDAL 774
Query: 343 YNVTGRLRDN 352
+ RLR++
Sbjct: 775 IQIVLRLRED 784
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 100/372 (26%), Positives = 159/372 (42%), Gaps = 61/372 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + + V +RILC D VG VIGK G +I A++ A I V + C +R+IT+
Sbjct: 336 DKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYC 395
Query: 238 S--EGPE------SRYSP---AQKAVVLVFSRLI----EGTSEKGLDFSSNKGLLVNARL 282
S E E S P AQ A++ V+ ++ E ++ +D NK RL
Sbjct: 396 SVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNK----ECRL 451
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK----CISENDRVVQISGEFSKV 338
+V +Q L+GK G I +R+ T S++++S + C E D VV ISGE V
Sbjct: 452 LVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESV 511
Query: 339 KDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK-DPASFGV-HSSVAVSHD 396
K A++ V S+++ + +P + D S V +SV V D
Sbjct: 512 KQALFAV---------------------SAIMYKINPRENIPLDSTSQDVPAASVIVPSD 550
Query: 397 FS-----QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHH 451
S Q DH+ L PS + G ++ V S H
Sbjct: 551 LSNSVYPQTGFYSNQDHI-LQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTH 609
Query: 452 KGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR--L 509
G GS +V +++ P I V G+ GS + R+R+ SG+ + V++ R
Sbjct: 610 GFG---GSSRSEELV----FKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKC 662
Query: 510 GSTDRIVVISGT 521
G + +++++ T
Sbjct: 663 GDDECVIIVTAT 674
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 1/166 (0%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGA+IG+ G I+ + E A I + P ER + ++A + P++
Sbjct: 120 ESVFRILVPAQKVGAIIGRKGEFIKKMCEETKARIKILDGPPGVPERAVMISAKDEPDAP 179
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA ++ V R+ + + + + G + RL+V S+Q G L+GK G I ++
Sbjct: 180 LSPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQ 239
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +RI+ + + +DRVV+I GE V+ AV ++ LR
Sbjct: 240 DSSKSIVRIV-ENVPPVALNDDRVVEIQGEPLGVQKAVELISSHLR 284
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
++ +P +V G G+++ +R+ SGA V + E R D V I+GT + Q AQ L
Sbjct: 395 DMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGDMTVEITGTAAQVQTAQQL 454
Query: 532 LQAFI 536
+Q F+
Sbjct: 455 IQNFM 459
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A E P+S
Sbjct: 47 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKEEPDSS 106
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V R+++G +G G V+ RL+VA++Q G L+GK G + ++
Sbjct: 107 LPPAMDGLLKVHKRIVDGL--EGDSSHMPPGGKVSTRLLVAASQAGSLIGKQGGTVKSIQ 164
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L + ++DRVV++ GE V AV + LR
Sbjct: 165 EASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLR 211
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 446 QGLSHHKGGLELGSGSKSA------IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISG 499
QG+S + + +G + S+ ++T T ++ +P + +V G G+++ +R+ SG
Sbjct: 291 QGISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASG 350
Query: 500 AKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
A V + E R + V I+GT + QAAQ L+Q F+
Sbjct: 351 ATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQNFM 387
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 3/167 (1%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G I+ + E A I + P ER + V+A E P+S
Sbjct: 116 ESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTAERAVMVSAKEEPDSS 175
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V R+++G +G G V+ RL+VA++Q G L+GK G + ++
Sbjct: 176 LPPAMDGLLKVHKRIVDGL--EGDSSHMPPGGKVSTRLLVAASQAGSLIGKQGGTVKSIQ 233
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ + +R++ + L + ++DRVV++ GE V AV + LR
Sbjct: 234 EASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLR 280
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 446 QGLSHHKGGLELGSGSKSA------IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISG 499
QG+S + + +G + S+ ++T T ++ +P + +V G G+++ +R+ SG
Sbjct: 360 QGISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASG 419
Query: 500 AKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
A V + E R + V I+GT + QAAQ L+Q F+
Sbjct: 420 ATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQNFM 456
>gi|47220208|emb|CAF98973.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 148/366 (40%), Gaps = 64/366 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDTI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A + F I + L S V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 FKAFAMIAYKFEEDIINSMSNSLATSKPP---VTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 V-------TGTSIRIISDQLLKCISEN-DRVVQISGEFSKVKDAVYNVTGRLRDNH---- 353
G S I +K ++ + + I V G++R
Sbjct: 128 AELLCVIKEGISSDIFFCMCVKSVTASPPKGATIPYRPKPASTPVIFSGGQVRAEPALQH 187
Query: 354 --FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL 411
+ T+N R SS T PY A+ H P + L +
Sbjct: 188 RCYFHTVNANENRPVSSAYTIQGPY---------------AIPH----PDQLTKLHQLAM 228
Query: 412 SHSLDCP---SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
+ P ++P + T + SD G + S H
Sbjct: 229 QQTPFTPLGQTTPAFPAFLSQTSFLVAFVSDPGLDATPPASTH----------------- 271
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP A
Sbjct: 272 ---ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLA 328
Query: 529 QSLLQA 534
Q L+ A
Sbjct: 329 QYLINA 334
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
P + +PA A + S L+ S+ GLD + L + ++ +GC++G+ GT I
Sbjct: 235 PLGQTTPAFPAFLSQTSFLVAFVSDPGLDATPPAS---THELTIPNDLIGCIIGRQGTKI 291
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+E+R+++G I+I + ++R + I+G + + A Y + RL
Sbjct: 292 NEIRQMSGAQIKIANAME----GSSERQITITGTPANISLAQYLINARL 336
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 85/166 (51%), Gaps = 1/166 (0%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVGAVIG+ G I+ + E+ A I + P ER + ++A + P++
Sbjct: 125 ESVFRVLVPVQKVGAVIGRKGEFIKKMCEESRARIKILDGPPGVPERAVMISAKDEPDAL 184
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
SPA ++ V R+ +G + G + RL+V ++Q G L+GK G I ++
Sbjct: 185 VSPAVDGLLRVHKRITDGLDSETDQPQRGAGPVGPTRLLVPASQAGSLIGKQGATIKSIQ 244
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ ++RI+ + + +DRVV+I GE V AV + LR
Sbjct: 245 DASKCALRIL-ENVPPVALNDDRVVEIQGEPLDVHKAVELIASHLR 289
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 95/363 (26%), Positives = 162/363 (44%), Gaps = 40/363 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S G
Sbjct: 17 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTGA---- 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
AV ++ +L E + S V RLV+ ++Q G L+GK G I E+R+
Sbjct: 71 --VFHAVSMIAFKLDEDLCTGPPNGGSVSKPPVTLRLVIPASQCGSLIGKAGAKIKEIRE 128
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNTARTR 364
TG +++ D L + +R V +SG + V + + ++ G T+ +
Sbjct: 129 STGAQVQVAGDLL---PNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSL 185
Query: 365 STSSVLTETSPYSRLK-DPASFGVHSSV-AVSHDFSQPPLTQG-----MDHLGLSHSLDC 417
S +VL T+ + + G + V H QP +G ++ +S
Sbjct: 186 SLGTVLLSTNQVANIAIQKQERGSNRQYHQVEHGSGQPGKLRGNGQEAVEVAAVSMGPLP 245
Query: 418 PSSPKLWTAQTVTG--VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P PK+ Q ++G V S V GL+ G+ + S E +V
Sbjct: 246 PPEPKVSKLQQLSGPPVPFTSPSVV------------PGLDPGAQTSSQ-------EFLV 286
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
P ++IG V G GS + +RQ+SGA + + GS +R V I+G+P AQ L+ A
Sbjct: 287 PNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQTEGSGERHVTITGSPVSIALAQYLITAC 346
Query: 536 ILT 538
+ T
Sbjct: 347 LET 349
>gi|55742577|ref|NP_998282.1| poly(rC)-binding protein 4 [Danio rerio]
gi|33604078|gb|AAH56323.1| Zgc:65870 [Danio rerio]
gi|41946775|gb|AAH65955.1| Zgc:65870 [Danio rerio]
Length = 442
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/357 (24%), Positives = 169/357 (47%), Gaps = 32/357 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+ A I++ C ER+IT+T + E +
Sbjct: 5 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEG--SCPERIITITGAT--ECVF 60
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+A ++ +L E + + + V RLV+ ++Q G L+GKGG+ I E+R+
Sbjct: 61 ----RAFTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIRE 116
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG-TLNTARTR 364
TG +++ D L + +R V ISG + V + + ++ G T+ +
Sbjct: 117 KTGAQVQVAGDLL---PNSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSP 173
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+ +VL + + AS + S D Q Q + G+ HS + +L
Sbjct: 174 APGAVLLAGNQVFETSEFASHPLFSVAQGGLDLQQAYTVQ--NQYGIPHS-ELAKLHQLS 230
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
Q + + ++ V G+E S S++A + E+++P ++IGS+
Sbjct: 231 MQQGLGPIAQATATQV----------LPAGIE--SSSQTA-----SQELLIPNDLIGSII 273
Query: 485 GENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
G G+ + +RQ+SGA++ + ++DR V I+G+P AQ L+ + + T S
Sbjct: 274 GRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYLITSCLETAKS 330
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 92/284 (32%)
Query: 167 LSLESDRVATL--DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
+ LE D A + T + V+ R++ + G++IGKGG+ I+ ++ + GA + V G
Sbjct: 68 IKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGD 127
Query: 224 TMPECDERLITVTAS----------------EGPES------RYSPAQKAVVLVFSRLIE 261
+P ER +T++ S E P R SPA AV+L +++ E
Sbjct: 128 LLPNSTERGVTISGSQDAIIQCVKLICTVILESPPKGATIPYRPSPAPGAVLLAGNQVFE 187
Query: 262 ----------GTSEKGLDF-----------------------SSNKGL------------ 276
++ GLD S +GL
Sbjct: 188 TSEFASHPLFSVAQGGLDLQQAYTVQNQYGIPHSELAKLHQLSMQQGLGPIAQATATQVL 247
Query: 277 ---------LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDR 327
+ L++ ++ +G ++G+ GT I+E+R+V+G I+I S + S +DR
Sbjct: 248 PAGIESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGS----QLDSTSDR 303
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLT 371
V I+G + A Y +T L TA++ + SS ++
Sbjct: 304 HVTITGSPISINLAQYLIT---------SCLETAKSTAQSSSMS 338
>gi|281341187|gb|EFB16771.1| hypothetical protein PANDA_007698 [Ailuropoda melanoleuca]
Length = 323
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 150/351 (42%), Gaps = 55/351 (15%)
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
G ++ ++ E+GA I++ C ER++T+T GP A+ F+ +
Sbjct: 6 GETVKKMREESGARINISEG--NCPERIVTIT---GPTD-------AIFKAFAMIAYKFE 53
Query: 265 EKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK 320
E ++ SN V RLVV ++Q G L+GKGG+ I E+R+ TG +++ D L
Sbjct: 54 EDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP- 112
Query: 321 CISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK 380
+ +R V ISG + V + + ++ G R + S+ + R
Sbjct: 113 --NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQVR-A 169
Query: 381 DP-----------------ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
DP ++ + A+ H P LT+ + L + + P P
Sbjct: 170 DPLAASTANLSLLLQPPPLPAYTIQGQYAIPH----PDLTK-LHQLAMQQT---PFPPLG 221
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
T G L S +Q L GL+ A +T E+ +P ++IG +
Sbjct: 222 QTNPAFPGEKLPLHSSE---EAQNLMGQSSGLD-------ASPPASTHELTIPNDLIGCI 271
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
G G+ + +RQ+SGA++ + GS++R + I+GTP AQ L+ A
Sbjct: 272 IGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINA 322
Score = 41.6 bits (96), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 32 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 91
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 92 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 124
>gi|90081810|dbj|BAE90186.1| unnamed protein product [Macaca fascicularis]
Length = 300
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 144/328 (43%), Gaps = 44/328 (13%)
Query: 211 LQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
++ E+GA I++ C ER++T+T GP A+ F+ + E ++
Sbjct: 1 MREESGARINISEG--NCPERIVTIT---GPTD-------AIFKAFAMIAYKFEEDIINS 48
Query: 271 SSNKGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
SN V RLVV ++Q G L+GKGG+ I E+R+ TG +++ D L + +
Sbjct: 49 MSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP---NSTE 105
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R V ISG + V + + ++ G R + S+ + ++
Sbjct: 106 RAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVI-------FAGGQAYT 158
Query: 387 VHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQ 446
+ A+ H P LT+ + L + + P P T G L S +Q
Sbjct: 159 IQGQYAIPH----PDLTK-LHQLAMQQT---PFPPLGQTNPAFPGEKLPLHSSE---EAQ 207
Query: 447 GLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
L GL+ A +T E+ +P ++IG + G G+ + +RQ+SGA++ +
Sbjct: 208 NLMGQSSGLD-------ASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN 260
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQA 534
GS++R + I+GTP AQ L+ A
Sbjct: 261 ATEGSSERQITITGTPANISLAQYLINA 288
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 21 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 80
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 81 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 113
>gi|242048332|ref|XP_002461912.1| hypothetical protein SORBIDRAFT_02g010550 [Sorghum bicolor]
gi|241925289|gb|EER98433.1| hypothetical protein SORBIDRAFT_02g010550 [Sorghum bicolor]
Length = 579
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 49/304 (16%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV-----QIS 332
V+ RL++ + G L+GK G II + TG I + + C +RV+ +I+
Sbjct: 282 VSFRLLLPTYLAGGLIGKRGLIIKGIEDETGACID-VGAPVTGC---KERVITICALEIT 337
Query: 333 GEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPAS--FGVHSS 390
GE +++A+ V +LR++ FS + + +SS + ++ ++ + ++ + + ++
Sbjct: 338 GEQVNIRNALSLVCWKLRNHIFSNETDYNNSHISSSEIASSNATNQANNYSTSQYSMDNA 397
Query: 391 VAVSHDFSQPPLTQGMDHLGLSHS-LDCPSSPKLWTAQTVTGVHLRGSS----------- 438
V H P L+ G+D + S S L+ SS + V G+ +RGS+
Sbjct: 398 HKVDHG---PSLSYGVDSVEKSFSDLELSSSEIQLGSLGVQGLKVRGSNSHHFEPMGRMK 454
Query: 439 -DVGRG---------------WSQGLSHH-KGGL------ELGSGSKSAIVTNTTVEIIV 475
D G G W+ ++++ G+ L G + A +T T E V
Sbjct: 455 PDNGNGVRINNSDSGIQNPTEWNDIVTNNLNHGIIFSEENNLVRGVEHASITRITYETAV 514
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAF 535
+++ VYG+NGSNL +L ++SGA + V+ P + ++V+SG PD+ Q+AQ LL
Sbjct: 515 SGSILTLVYGDNGSNLAKLTEVSGADIAVYNPPSEGNEAMIVVSGPPDQAQSAQRLLVEL 574
Query: 536 ILTG 539
IL G
Sbjct: 575 ILQG 578
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
Q+VSFR+L G +IGK G II+ ++ E GA I VGA + C ER+IT+ A E
Sbjct: 280 QQVSFRLLLPTYLAGGLIGKRGLIIKGIEDETGACIDVGAPVTGCKERVITICALE 335
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 95/183 (51%), Gaps = 6/183 (3%)
Query: 169 LESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC 228
LE R LD + V FR+L KVG++IG+ G I+ + E A I + P
Sbjct: 114 LEVVRRGGLDGL---ERVFFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGT 170
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQ 288
ER + V+A E P+S PA ++ V R+++G +G G V+ RL+VA++Q
Sbjct: 171 AERAVMVSAKEEPDSSLPPAMDGLLKVHKRIVDGL--EGDSSHMPPGGKVSTRLLVAASQ 228
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTG 347
G L+GK G + +++ + +R++ + L + ++DRVV++ GE V AV +
Sbjct: 229 AGSLIGKQGGTVKSIQEASNCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIAS 288
Query: 348 RLR 350
LR
Sbjct: 289 HLR 291
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 446 QGLSHHKGGLELGSGSKSA------IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISG 499
QG+S + + +G + S+ ++T T ++ +P + +V G G+++ +R+ SG
Sbjct: 371 QGISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASG 430
Query: 500 AKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
A V + E R + V I+GT + QAAQ L+QA L
Sbjct: 431 ATVTIQETRGVPGEMTVEINGTASQVQAAQQLIQALFL 468
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 15/163 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D + G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQGSGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+R+VTG SI++ SD L + +R V ISG + +Y++
Sbjct: 129 IREVTGASIQVASDML---PNSTERAVTISGTSEAITQCIYHI 168
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N T E+ VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD
Sbjct: 365 NQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDA 424
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 425 VSLAQYLI 432
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + I+G V A
Sbjct: 370 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGATDRTITITGNPDAVSLA 428
Query: 342 VY 343
Y
Sbjct: 429 QY 430
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 105 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTISGT 157
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 6/186 (3%)
Query: 170 ESDRVATLDARTQQQ-----EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT 224
E+D++A + A + E FR+L S KVGA+IG+ G I+ + E+ A I +
Sbjct: 99 EADQLANVVAEDTKWPGWPGESVFRVLVSTQKVGALIGRKGEFIKRMCDESKARIKILDG 158
Query: 225 MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVV 284
P ER + ++A + P++ PA ++ V +R+ +G + RL+V
Sbjct: 159 PPGVPERAVMISAKDEPDALVPPAIDVLLRVHNRITDGLDSETDQAQKGASPAGPTRLLV 218
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344
++Q G L+GK GT I ++ + ++RI+ + + +DRVV+I GE V AV
Sbjct: 219 PASQAGSLIGKQGTTIKSIQDASKCALRIL-ENVPPVALNDDRVVEIQGEPHDVHKAVEL 277
Query: 345 VTGRLR 350
+ LR
Sbjct: 278 IANHLR 283
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 15/163 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
KA L+ + E S+ D S G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDIQSGGGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 128
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+R+VTG SI++ S+ L + +R V ISG + +Y++
Sbjct: 129 IREVTGASIQVASEML---PNSTERAVTISGTSEAITQCIYHI 168
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N T E+ VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD
Sbjct: 365 NQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDA 424
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 425 VALAQYLI 432
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + I+G V A
Sbjct: 370 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGATDRTITITGNPDAVALA 428
Query: 342 VY 343
Y
Sbjct: 429 QY 430
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 105 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGT 157
>gi|47214279|emb|CAG01336.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 136/329 (41%), Gaps = 40/329 (12%)
Query: 214 EAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
++GA I++ C ER++T+T GP A+ F+ + E ++ SN
Sbjct: 94 QSGARINISEG--NCPERIVTIT---GPTD-------AIFKAFAMIAYKFEEDIINSMSN 141
Query: 274 KGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
V RLVV ++Q G L+GKGG+ I EMR+ TG +++ D L + +R V
Sbjct: 142 SPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLP---NSTERAV 198
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHS 389
ISG + V + + ++ G R + S+ + ++ +
Sbjct: 199 TISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVI-------FSGGQAYTIQG 251
Query: 390 SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLS 449
A+ H D L H L P QT W Q L
Sbjct: 252 QYAIPHP----------DQLSKLHQLAMQQPPFTPLGQTTPAFPGTYPPTWRPRWPQLLL 301
Query: 450 HHKGGLELGSGSKSAIV----TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505
S S +A + +T E+ +P ++IG + G G+ + +RQ+SGA++ +
Sbjct: 302 SFVPADARSSSSVTAALDAGNQASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA 361
Query: 506 EPRLGSTDRIVVISGTPDETQAAQSLLQA 534
GS++R + I+GTP AQ L+ A
Sbjct: 362 NAMEGSSERQITITGTPANISLAQYLINA 390
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 329 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQITITGTPANISLA 384
Query: 342 VYNVTGRLRD 351
Y + R RD
Sbjct: 385 QYLINARFRD 394
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 111 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 170
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 171 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT 203
>gi|148222025|ref|NP_001090223.1| neuro-oncological ventral antigen 2 [Xenopus laevis]
gi|49256115|gb|AAH72959.1| Nova1 protein [Xenopus laevis]
Length = 413
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 180/403 (44%), Gaps = 54/403 (13%)
Query: 165 RPLSLESDRVATLDARTQQQ--EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222
RPL ++ +T + T + E+ ++L + G++IGKGG I LQ E GA I +
Sbjct: 11 RPLETPTEATSTKRSNTAAEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLS 70
Query: 223 AT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK-GLLV 278
+ P ER+ V S +A++ V + + E E N G+L+
Sbjct: 71 KSKDFYPGTTERVCLVQGSA----------EALLSVHNFIAEKVREVPQGAPKNDLGVLL 120
Query: 279 ------------NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEND 326
A+L+V + G ++GKGG + + + +G +++ Q + ++
Sbjct: 121 PPQSTINAERAKQAKLIVPNTTAGLIIGKGGATVRNIMEESGAWVQL--SQKPAGSNLHE 178
Query: 327 RVVQISGEFSKVKDAVYNVTGRLRDNHFSGT--LNTARTRSTSSVLTET---SPYSR-LK 380
RVV +SGE S+V+ A++++ + R++ GT LN + + V SPY+
Sbjct: 179 RVVTVSGEPSQVQKAIHSIIHKSREDPPQGTTHLNISYINTQGPVANSNPTGSPYAGGAA 238
Query: 381 DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT----VTGVHLRG 436
+P + S G D L +S +L+ +S T V GVH
Sbjct: 239 EPVLTPFQPAPPAPPAIS------GGDLLAISAALNTLASYGYSTGMGYNPLVGGVHPAA 292
Query: 437 ----SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLL 492
+S G G L G++S + T+E+ VPE ++G++ G+ G L+
Sbjct: 293 VNLLASYTGEAGPSLGLGGGGILLEKMGAES-VTGKETLEMAVPETLVGAILGKGGKTLV 351
Query: 493 RLRQISGAKVIVH---EPRLGSTDRIVVISGTPDETQAAQSLL 532
++++GA++ + E G+ R V I+G P TQAAQ L+
Sbjct: 352 EYQELTGARIQISKKGEFVPGTRSRKVTITGPPGATQAAQYLI 394
>gi|356576359|ref|XP_003556300.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 156/360 (43%), Gaps = 75/360 (20%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTA 237
++++ R L SN G+VIGKGG+ I QS++GA I + P +R+I V+
Sbjct: 31 SEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSG 90
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ + Q+AV L+ S+L+ SE + ++ RLVV + G ++GKGG
Sbjct: 91 A------INEIQRAVELILSKLL---SELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGG 141
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSG 356
I + + I+ IS Q +NDR+V ++G F + A+ + +L D H++
Sbjct: 142 VTIRSFIEDSQAGIK-ISPQDNNYYGQNDRLVMLTGTFDEQMRAIELIVSKLAEDPHYAQ 200
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
++N SP+S GV+ S + G+ ++
Sbjct: 201 SMN--------------SPFSYP------GVYFS----------------GYQGVPYTYV 224
Query: 417 CPS-SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
PS +P + A V+ R + G L +G V
Sbjct: 225 LPSVAPPAYNA-----VNYRPNGTAGGKLQNSKEERSNSLTMG----------------V 263
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
+ IG V G G N++ + Q+SGA++ + + G+TDR V I+G+ + A+S++
Sbjct: 264 ADEHIGLVVGRGGRNIMEISQVSGARIKISDRGDYISGTTDRKVTITGSQRAIRTAESMI 323
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDET 525
T + +V + GSV G+ GS + + SGA++ + HE G+TDRI+++SG +E
Sbjct: 36 TYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEI 95
Query: 526 QAAQSLLQAFILT 538
Q A L+ + +L+
Sbjct: 96 QRAVELILSKLLS 108
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 83/167 (49%), Gaps = 2/167 (1%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FR+L KVG++IG+ G IR + + A I + P ER + V+A E P+
Sbjct: 161 ENVFRMLVPVQKVGSIIGRKGEFIRKITEDTKARIKILDGPPGTSERAVMVSAKEEPDCS 220
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V +++ D +S V RL+VA Q G L+GK G+ I +
Sbjct: 221 IPPAVDGLLRVHKQVVN-VDPHPADSASGAVRPVVTRLLVADTQAGSLIGKQGSTIKSFQ 279
Query: 305 KVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR 350
TG +IRI+ + L + +D +V+I GE S V AV V LR
Sbjct: 280 DATGCNIRILGSEHLPVFALRDDSIVEIQGESSGVHKAVELVAIHLR 326
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T + +P + +V G +G+N+ +R+ SGA + + E R + V ISGT + QAAQ
Sbjct: 438 TQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQ 497
Query: 530 SLLQAFI 536
L+Q F+
Sbjct: 498 QLVQNFM 504
>gi|326500580|dbj|BAK06379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 94/168 (55%), Gaps = 8/168 (4%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ + DKVG +IG+ G +I+ L A + V R++ ++A+E ++ +P
Sbjct: 96 FRLVVAGDKVGGLIGRRGEVIKRLCEVTRARVRVLDPTDGVSSRIVLISATEETQAELAP 155
Query: 248 AQKAVVLVFSRL--IEGTSEKGLDFS--SNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
A A V +F + IEG + DF+ + + +ARL+V Q L+GK GT I M
Sbjct: 156 AMDAAVRIFKHVNDIEGINP---DFTLPVSGPEICSARLLVPKAQGRHLIGKQGTTIQLM 212
Query: 304 RKVTGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++ TGT+IRII D+LL +R+V+I G KV +A+ +V G LR
Sbjct: 213 QESTGTTIRIIDKDELLSNQMVEERIVEIRGASLKVLNALKSVLGLLR 260
>gi|356535513|ref|XP_003536289.1| PREDICTED: RNA-binding protein Nova-1-like [Glycine max]
Length = 337
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 155/360 (43%), Gaps = 75/360 (20%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTA 237
++++ R L SN G+VIGKGG+ I QS++GA I + P +R+I V+
Sbjct: 31 SEEKPTYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSG 90
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ + Q+AV L+ S+L+ SE + ++ RLVV + G ++GKGG
Sbjct: 91 A------INEIQRAVELILSKLL---SELHSEDDNDAEPKTKVRLVVPNGSCGGIIGKGG 141
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSG 356
I + + I+ IS Q +NDR+V ++G F + A+ + +L D H++
Sbjct: 142 ATIRSFIEDSQAGIK-ISPQDNNYYGQNDRLVTLTGSFDEQMRAIELIVSKLSEDPHYAQ 200
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
++N SP+S GV+ S + G+ ++
Sbjct: 201 SMN--------------SPFSYP------GVYFS----------------GYQGVPYTYV 224
Query: 417 CPS-SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
PS +P + A V+ R + G L +G V
Sbjct: 225 LPSVAPPAYNA-----VNYRPNGAAGGKLQNSKEERSNSLTMG----------------V 263
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
+ IG V G G N++ + Q SGA++ + + G+TDR V I+G+ + A+S++
Sbjct: 264 ADEHIGLVVGRGGRNIMEISQASGARIKISDRGDYVSGTTDRKVTITGSQRAIRTAESMI 323
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDET 525
T + +V + GSV G+ GS + + SGA++ + HE G+TDRI+++SG +E
Sbjct: 36 TYIRFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGAINEI 95
Query: 526 QAAQSLLQAFILT 538
Q A L+ + +L+
Sbjct: 96 QRAVELILSKLLS 108
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 101/178 (56%), Gaps = 6/178 (3%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
+ + +V FRI+ + ++G VIGK G I+ ++ E A I + + +ER+I +++ +
Sbjct: 63 QAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 122
Query: 240 GPESRYSPAQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
E+ + A+KA+ + + ++ +G+S + L + RL++A +Q G L+G G
Sbjct: 123 N-ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASG 181
Query: 298 TIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I ++R +G SI I++ +QL C S E+DRVVQISG+ V A+ + +LR N
Sbjct: 182 QNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRVN 239
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 100/406 (24%), Positives = 171/406 (42%), Gaps = 75/406 (18%)
Query: 177 LDARTQQQE---VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
+DA+++ ++ R++ +VG++IGK G I++ + E+GA I++ C ER++
Sbjct: 1 MDAKSKDDSNISLTLRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIV 58
Query: 234 TVTASEGPESRYSPAQKAVVLVFSR---LIEGTSEK-GLDFSSNKGLLVNARLVVASNQV 289
T++ S E+ Y KA L+ ++ IE + K G G+ + RL+V ++Q
Sbjct: 59 TISGST--EAIY----KAFSLICTKVEEFIEMQNGKTGATAIGKCGMTL--RLIVPASQC 110
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GKGG I E+R+ TG I++ SD L + +R V ++G + ++++ +
Sbjct: 111 GSLIGKGGNKIKEIREATGAQIQVASDVLPQ---STERAVTLTGTRDSITQCIFHICAVM 167
Query: 350 RDNHFSG-----------------------TLNTARTRSTSSV---LTETSPYS--RLKD 381
++ G TL +A + + V + PY+ L
Sbjct: 168 VESPPKGVTIPYRAKPQMGAPVILAGGQAFTLASAGSAAGCDVGTMMVGGGPYNAPMLMV 227
Query: 382 PASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTG---------- 431
P S G +S+ + P L L P + G
Sbjct: 228 PPSPGAAASLGLIDPLDYPLLKNAFGPSQLGKLTGNPLAGLAALGLGSLGGPANSFNPAA 287
Query: 432 -VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
L GS G ++ GG G + V N + I+ G+ G+
Sbjct: 288 LAALAGSQLRSNGSGANINSRSGG---GQQTHEMTVPNDLIGCII---------GKGGTK 335
Query: 491 LLRLRQISGAKVIVH--EPRLG--STDRIVVISGTPDETQAAQSLL 532
+ +RQISGA + + E R G STDR + I+G PD AQ L+
Sbjct: 336 IAEIRQISGAMIRISNCEDREGSASTDRTITITGNPDSVALAQYLI 381
>gi|115482006|ref|NP_001064596.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|78708635|gb|ABB47610.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639205|dbj|BAF26510.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|215693240|dbj|BAG88622.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612825|gb|EEE50957.1| hypothetical protein OsJ_31513 [Oryza sativa Japonica Group]
Length = 586
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L KVGAVIG G +R L E A + V ER + + A E P+ P
Sbjct: 61 FRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKPP 120
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A A++ V+ +I ++ GLD N +V AR++ S Q L+G G++I+ ++K +
Sbjct: 121 AIDALLRVYECII---NDDGLDVRYNN--IVVARILTPSEQAASLIGDQGSVINYIKKAS 175
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
T+I +I L E+D +++I G ++V A+ V LR
Sbjct: 176 KTNIHVIDGDLPPVALEDDMIIEIWGLPARVHQALELVACHLR 218
>gi|363808250|ref|NP_001242748.1| uncharacterized protein LOC100819415 [Glycine max]
gi|255637181|gb|ACU18921.1| unknown [Glycine max]
Length = 318
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 129/313 (41%), Gaps = 20/313 (6%)
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
V+A E P+ PA ++ V +++ D +S G V RL+VA Q G L+G
Sbjct: 2 VSAKEEPDCSIPPAVDVLLRVHKQVVN-VDPHPADSASGAGRPVVTRLLVADTQAGSLIG 60
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLR--- 350
K G+ I + TG +IRI+ + L + +D VV+I GE S V AV V LR
Sbjct: 61 KQGSTIKSFQDATGCNIRILGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAIHLRKFL 120
Query: 351 -DNHFSGTLNTARTRSTSSV---LTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
D T R V + P+ P F +
Sbjct: 121 VDRSIVVVFETQMQRPDVRVNQNVPPGPPHQPWGPPQGFQAPGPGSGGGPVF----PPNP 176
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
++ SH+ D P +H + R S G+ H + + ++V
Sbjct: 177 QYMPPSHNYDNYYPPADLPPMD-KHLHQGPAPAYVRDASMGI--HSSSAQ----PQQSVV 229
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T T + +P + +V G +G+N+ +R+ SGA + + E R + V ISGT + Q
Sbjct: 230 TKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQ 289
Query: 527 AAQSLLQAFILTG 539
AAQ L+Q F G
Sbjct: 290 AAQQLVQVFHFKG 302
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 148/355 (41%), Gaps = 55/355 (15%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+ R+L + GAVIGKGG I+ L++E A +++ + + ER++T+ A
Sbjct: 104 KYELRLLVPSRGAGAVIGKGGESIKRLRAECDATLTIPDS--QTPERIVTIVAE------ 155
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ V + RL E + D + RL+V + G ++G+GG I E+R
Sbjct: 156 IDNVIRCVNEIIPRLDECLKTRDSDDEGSARGESELRLLVHQSHAGAIIGRGGYRIKELR 215
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ T T +++ S C +RV+QI G K+ V + L++ G
Sbjct: 216 EETSTQLKVYSQ---CCPQSTERVIQIIGVPEKIIACVILIINMLKEIPIKGP------- 265
Query: 365 STSSVLTETSPY-SRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ PY S DP + ++ GM GL P +P+
Sbjct: 266 --------SRPYESMFYDPNFVHEYGGFPPDRNYRGMGPRGGMYGGGLP-----PRAPRF 312
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
GRG G+S T ++ +P + G++
Sbjct: 313 PYG--------------GRGMGMGVSPFP--------PAPFGGPMQTTQVTIPNELGGTI 350
Query: 484 YGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
G+ G + R+R+ SGA ++V EP+ +++RI+ ISG+ + Q AQ LLQ + T
Sbjct: 351 IGKGGERINRIREESGAHIVV-EPQQPNSERIITISGSHAQIQTAQYLLQQCVRT 404
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 81.6 bits (200), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 92/377 (24%), Positives = 157/377 (41%), Gaps = 61/377 (16%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASE 239
QQ + R+L S+ GA+IGKGG I+ L++E A + V P+ + ER+ TVTA E
Sbjct: 46 QQGKFEVRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV----PDSNTPERVCTVTADE 101
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
K V+ + ++ + +FS V R+++ + G L+G+ G+
Sbjct: 102 ----------KTVLNILKDVLPRLED---NFSERDPCEV--RMLIHQSHAGALIGRNGSK 146
Query: 300 ISEMRKVTGTSIRIISDQLLKCI-SENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I E+R+ ++I + C DRV+ SGE V + V L++ G+
Sbjct: 147 IKELREKCSARLKIFTG----CAPGSTDRVLITSGEQKNVLAIIEEVMRELKEIPIKGS- 201
Query: 359 NTARTRSTSSVLTETSPY--SRLKDPASFGVHSSVAVSHDFSQPPLTQG----------- 405
+PY S DP++ + + PP ++G
Sbjct: 202 --------------ATPYLPSFHYDPSNISEYGGFPGTMSSGGPPNSRGPSQQRGGQGPP 247
Query: 406 ---MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
+ G P S + Q G ++G + G+ G +G
Sbjct: 248 GGPRSYGGAVTPGGGPRSFEAGDFQQFRGGPVQGYAMNAPGYPPQQGQFGGAPPANTGYG 307
Query: 463 SAIVTN---TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVIS 519
TT ++ +P ++ G++ G G + R+RQ SGA++ + EP G +RI+ I
Sbjct: 308 YGPGGGGPVTTAQVTIPSDLGGTIIGRGGERIARIRQDSGAQITL-EPSNGQPERIITIK 366
Query: 520 GTPDETQAAQSLLQAFI 536
GT + +AQ LLQ +
Sbjct: 367 GTEQQIHSAQYLLQQCV 383
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 105/188 (55%), Gaps = 9/188 (4%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G+ I+ ++ E A I + + +ER+I ++ S+
Sbjct: 54 RAKNQDVLFRIVVPSRQIGKVIGKEGSRIQKIREETKATIKIADAIARHEERVIIIS-SK 112
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV-NA-RLVVASNQVGCLLGKGG 297
E+ S A+ A++ S +++ G +V NA RL++A +Q GCL+G G
Sbjct: 113 DSENVISDAENALLQXASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSG 172
Query: 298 TIISEMRKVTGTSIRII-SDQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I ++R +G +I I+ +QL C S ++DR+VQISG+ V A+ + +LR +
Sbjct: 173 QNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRTTNL 232
Query: 355 SG---TLN 359
+ TLN
Sbjct: 233 AADYVTLN 240
>gi|402083824|gb|EJT78842.1| hypothetical protein GGTG_03937 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 373
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 160/363 (44%), Gaps = 53/363 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 38 DEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVRAGVSKVVQGVHDRVLTITG 97
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
KA +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 98 G------CDAISKAYAIVARALLEGAPTLGMGGVVQSNGTHPIKLLISHNQMGTIIGREG 151
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G + D L + N+RVV++ G ++ AV+ + L D+
Sbjct: 152 LKIKHIQDVSGVRMVAQKDMLPQS---NERVVEVQGTPEGIQRAVWEICKCLIDDW---- 204
Query: 358 LNTARTRSTSSVLTETSPYSRLK----DPASFG--VHSSVAVSHDF-SQPPLTQGMDHLG 410
R+T +VL +P R + P + G ++S D+ S P +T+ +
Sbjct: 205 -----QRATGTVL--YNPAVRTQPGGAPPLTTGGPGYNSTGARGDYGSSPRVTRTGNGAD 257
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
S+ S+P+L+ ++ + RG +H + G E+ T
Sbjct: 258 FSNG----STPRLYNRRSDSDAANRGPP----------THDENGEEI-----------QT 292
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQ 529
I +P N++G + G GS + +R+ SGA++ I P + +R+ I G+ ++A
Sbjct: 293 QNISIPANMVGCIIGRAGSKISEIRKASGARISIAKAPHDETGERMFTIMGSAKANESAL 352
Query: 530 SLL 532
LL
Sbjct: 353 FLL 355
>gi|224131210|ref|XP_002328482.1| predicted protein [Populus trichocarpa]
gi|222838197|gb|EEE76562.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 136/315 (43%), Gaps = 25/315 (7%)
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
V+A E P+S PA ++ V R+I+G + G V+ RL+V ++Q G L+G
Sbjct: 2 VSAKEEPDSSLPPAMDGLLRVHKRIIDGLEGDSSHAPPSSGAKVSTRLLVPASQAGSLIG 61
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCIS-ENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
K G + +++ + +R++ + L S ++DRVV++ GE V AV + +LR
Sbjct: 62 KQGGTVKSIQEASACIVRVLGAEDLPVFSLQDDRVVEVLGEAVGVHKAVELIASQLRKFL 121
Query: 354 FSGT---LNTARTRSTSSVLTETSPYSRLKDPASFGVH----SSVAVSHDFSQPPLTQGM 406
+ L + + + + + P+ P S ++ + + QPP
Sbjct: 122 VDRSIIPLFEMQMQMANPPMEQMPPHQSWGGPQSLPLNPVGGPGYGQNPQYMQPP----R 177
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
H D P + Q G S GR G G + + +++
Sbjct: 178 QHDNYYPPSDMPPPMEKQPHQ--------GISAYGRQTPMG-----GHASSNAQAAPSMI 224
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T T ++ +P + +V G G+++ +R+ SGA V + E R V ISGT + Q
Sbjct: 225 TQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPEAMTVEISGTASQVQ 284
Query: 527 AAQSLLQAFILTGPS 541
AQ L+QA P+
Sbjct: 285 TAQQLIQAIFSGAPA 299
>gi|363543195|ref|NP_001241811.1| RNA-binding protein Nova-1 [Zea mays]
gi|195659123|gb|ACG49029.1| RNA-binding protein Nova-1 [Zea mays]
Length = 344
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 158/363 (43%), Gaps = 77/363 (21%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ + R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 36 KEKPIHLRFLVSNASAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 94
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ +G +F+ + RLVV +N G ++GKGG
Sbjct: 95 -----LFGEVMKAMELILEKLL----AEGEEFNEAEA-RPKVRLVVPNNSCGGIIGKGGA 144
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G F +A+ + +L D H+
Sbjct: 145 TIKSFIEESHAGIK-ISPQDNNYVGLHDRLVTVTGTFDNQMNAIDLILKKLSEDVHYPAN 203
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH-----LGLS 412
L++ PY+ L P+ + V V + Q P +++ G
Sbjct: 204 LSSP------------FPYAGLTFPS----YPGVPVGYMIPQVPYNNAVNYGPNNGYGGR 247
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ + PS+P +R S ++ ++
Sbjct: 248 YQNNKPSTP------------MR-------------------------SPASNEAQESLT 270
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQ 529
I + + IG+V G G N+ + Q SGA++ + + G++DR V I+GT + + A+
Sbjct: 271 IGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFISGTSDRKVTITGTSEAIRTAE 330
Query: 530 SLL 532
S++
Sbjct: 331 SMI 333
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
+++ FRI+ +++K+G VIGK G+ I L+ + GA I + + ++R+I +++ E
Sbjct: 91 RDIVFRIVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRVIIISSKGEEEE 150
Query: 244 RYSPAQKAVVLVFSRLIE--GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
S A++A++ + + ++E G S + RL++A +Q G L+G G I
Sbjct: 151 ETSAAEQALIQIATVILEESGESSATAKVGTRHVGPNMMRLLIAGSQAGSLIGASGKTIK 210
Query: 302 EMRKVTGTSIRIISDQL---LKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
E+R +G +I+I+ L SE DR+VQISGE S+V A+ ++ LR+
Sbjct: 211 EIRNDSGATIKILPQNLSPICASASETDRLVQISGEVSQVLKALDHIGVTLRE 263
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
TVE+ +P +V G V G+ G N+ ++R +SGA V V + G+T R + GT + AQ
Sbjct: 330 TVEMKIPSSVAGGVIGKRGDNISQIRSLSGAIVKVIGEKDGAT-RTIFFEGTAHQVATAQ 388
Query: 530 SLLQAFI 536
+L+ I
Sbjct: 389 NLVNNHI 395
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
I+V N IG V G+ GS + +LR+ +GA++ + +P DR+++IS +E + +
Sbjct: 97 IVVASNKIGKVIGKQGSKINQLREDTGARIKIADPVTPLEDRVIIISSKGEEEEETSAAE 156
Query: 533 QAFI 536
QA I
Sbjct: 157 QALI 160
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 109/208 (52%), Gaps = 15/208 (7%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G I+ ++ E A I + + +ER+I +++ E
Sbjct: 65 RAKAQDVIFRIVVPSRQIGKVIGKVGCRIQKIREETKATIKIADAIARHEERVIIISSKE 124
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG---LLVNA-RLVVASNQVGCLLGK 295
+ S A+ A+ + + LI E + S G L N RL++A +Q G L+G
Sbjct: 125 S-DCVVSDAENALKKI-ATLILKEDESPAESSKVVGAGHLGANTIRLLIAGSQAGSLIGV 182
Query: 296 GGTIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
G I ++R +G +I +++ +QL C S E+DRVVQISG+ V AV + +LR+N
Sbjct: 183 SGQNIEKLRNSSGATITVLAPNQLPLCASAHESDRVVQISGDVPVVLKAVEEIGCQLREN 242
Query: 353 ------HFSGTLNTARTRSTSSVLTETS 374
S T N A R T + TS
Sbjct: 243 PPKQVISISPTYNYATVRPTQPYVDPTS 270
>gi|402086578|gb|EJT81476.1| Poly(rC)-binding protein 3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 486
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 100/379 (26%), Positives = 163/379 (43%), Gaps = 39/379 (10%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
A D+ + + R + S+ + VIGKGG + ++ +GA +V ER++T
Sbjct: 115 AAADSHDETAWIHIRAVISSPEAATVIGKGGENVSKIRQLSGAKCTVSDYQKGAVERILT 174
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLL 293
V+ AV F +I + + L D SS RL++ +G ++
Sbjct: 175 VSG----------IVDAVAKAFGLIIRTLNNEPLSDASSAHSKTYPLRLLIPHILIGSII 224
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR--- 350
GKGG I E+++ +G + SD L SE VV G V A Y V L
Sbjct: 225 GKGGARIKEIQEASGARLNA-SDSCLPLSSERSLVVM--GVADAVHIATYYVGSTLLEQL 281
Query: 351 DNHFSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPA--SFGVHSSVAVSHDFSQPPL 402
++ F G +A TR+ V + PY L PA +FG + D P+
Sbjct: 282 NDRFGGPAASAYATRAGGPVGAVPGGMQVVPY--LPQPAGGNFGNRENYGRRPDPRAGPV 339
Query: 403 TQGMDHLGLSH------SLDCPSSPKLWTAQT-VTGVHLRGSSDVGRGWSQ--GLSHHKG 453
QG H P+ P + AQ G H++ VG Q G H +
Sbjct: 340 PQGAAVPYAQHYNPHAAHQPTPAVPVHYGAQGGAYGAHVQ-PPHVGHAGPQVHGAPHQQP 398
Query: 454 GLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
G A + T +I +P +++G++ G+ G+ + +RQISG+ + ++EP+ S +
Sbjct: 399 MHSQMPGPGGA--QSLTQQIYIPNDMVGAIIGKGGTKINEIRQISGSVIKINEPQDNSNE 456
Query: 514 RIVVISGTPDETQAAQSLL 532
R+V I+GT + + A +L
Sbjct: 457 RLVTITGTEECNRMALYML 475
>gi|223949173|gb|ACN28670.1| unknown [Zea mays]
gi|238010644|gb|ACR36357.1| unknown [Zea mays]
gi|413924015|gb|AFW63947.1| transcribed sequence 1087 protein [Zea mays]
Length = 344
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 159/363 (43%), Gaps = 77/363 (21%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 37 KEKPTHLRFLVSNTAAGCIIGKGGSTINDFQSQSGARIQLSRSNEFFPGTNDRIIMVSG- 95
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ +G +F+ + RLVV ++ G ++GKGG
Sbjct: 96 -----LFDEVMKAMELILEKLL----AEGEEFNEAEA-RPKVRLVVPNSSCGGIIGKGGA 145
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V I+G F +A+ + +L D H+
Sbjct: 146 TIKSFIEESHAGIK-ISPQDNNYVGLHDRLVTITGTFDNQMNAIDLILKKLSEDVHYPPN 204
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH-----LGLS 412
L++ PY+ L +F + V V + Q P + +++ G
Sbjct: 205 LSSP------------FPYAGL----TFPSYPGVPVGYMIPQVPYSNAVNYGPNNGYGGR 248
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ + P++P +R S ++ ++
Sbjct: 249 YQNNKPTTP------------MR-------------------------SPASNEAQESLT 271
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQ 529
I + + IG+V G G N+ + Q SGA++ + + G++DR V I+GTP+ + A+
Sbjct: 272 IGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDYISGTSDRKVTITGTPEAIRTAE 331
Query: 530 SLL 532
S++
Sbjct: 332 SMI 334
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 1/166 (0%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGAVIG+ G I+ + E+ A I V P +R + ++A + P++
Sbjct: 114 ESVFRILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRAVMISAKDEPDAP 173
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
PA ++ V R+ +G + G + RL+V ++Q G L+GK G I ++
Sbjct: 174 LPPAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQ 233
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ +RI+ +S +DRVV+I GE V AV + LR
Sbjct: 234 DASKCVLRILESVPPVALS-DDRVVEIQGEPLDVHKAVELIASHLR 278
>gi|384490263|gb|EIE81485.1| hypothetical protein RO3G_06190 [Rhizopus delemar RA 99-880]
Length = 426
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 88/358 (24%), Positives = 155/358 (43%), Gaps = 35/358 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+S R L G +IGKGG + ++ + A +++ +P ER++TV GP
Sbjct: 79 ISLRSLVGMKDAGLIIGKGGKNVSEIRDSSMARVNISDIVPGAAERILTVV---GP---V 132
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
S KA LV ++IE E L NKG + V ++++ +N++G ++GK G++I
Sbjct: 133 SAVAKAYALVAEKIIE---ENTL-AEDNKGPIQQDVTIKILILANRMGSIIGKSGSVIRS 188
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--NHFSGTL-- 358
+++ +G +S Q +RVV I G ++ AV + L D NH +
Sbjct: 189 IQETSGAK---VSAQEEPLPLSTERVVTIHGTPDAIEQAVKKIGDILVDQPNHHGNYMLY 245
Query: 359 ----NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
A S+S+ Y R D ++ A SH M + G+
Sbjct: 246 KPIAGAAPHTSSSNHGNGHRNYRRSND-------NNNAASHAMPTAAAAAMMGYSGMLPM 298
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
+ + + G D GLS+ L + G + + + +I
Sbjct: 299 GNMSMNGFYYPPTNYPGGSGGRQGDYPLPMMPGLSN----LSMMGGLSNMMPATQSQQIY 354
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P ++G + G+ G + +RQ SG+ + + +P S +R++ I+GTP+ Q A LL
Sbjct: 355 IPNEMVGCIIGKGGMKINEIRQTSGSHIKIADPSTDSHERLITITGTPESNQMALYLL 412
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH-EPRLGSTDRI 515
L +K I + T++I++ N +GS+ G++GS + +++ SGAKV EP ST+R+
Sbjct: 152 LAEDNKGPIQQDVTIKILILANRMGSIIGKSGSVIRSIQETSGAKVSAQEEPLPLSTERV 211
Query: 516 VVISGTPDETQAAQSLLQAFILTGPS 541
V I GTPD + A + ++ P+
Sbjct: 212 VTIHGTPDAIEQAVKKIGDILVDQPN 237
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
S +I N+ VG +IGKGG I ++ +G+ I + + ERLIT+T + PES
Sbjct: 350 SQQIYIPNEMVGCIIGKGGMKINEIRQTSGSHIKIADPSTDSHERLITITGT--PESN-- 405
Query: 247 PAQKAVVLVFSRL 259
Q A+ L++SRL
Sbjct: 406 --QMALYLLYSRL 416
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 169 LESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPE 227
+E + +A + QQ+V+ +IL +++G++IGK G++IR++Q +GA +S +P
Sbjct: 147 IEENTLAEDNKGPIQQDVTIKILILANRMGSIIGKSGSVIRSIQETSGAKVSAQEEPLPL 206
Query: 228 CDERLITV 235
ER++T+
Sbjct: 207 STERVVTI 214
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + + VGC++GKGG I+E+R+ +G+ I+I ++R++ I+G +
Sbjct: 352 QIYIPNEMVGCIIGKGGMKINEIRQTSGSHIKIAD----PSTDSHERLITITGTPESNQM 407
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 408 ALYLLYSRL 416
>gi|71895775|ref|NP_001025686.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
gi|62205009|gb|AAH93475.1| neuro-oncological ventral antigen 2 [Xenopus (Silurana) tropicalis]
Length = 413
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 181/400 (45%), Gaps = 48/400 (12%)
Query: 165 RPLSLESDRVATLDART--QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222
RPL ++ +T + T + E+ ++L + G++IGKGG I LQ E GA I +
Sbjct: 11 RPLETPTEATSTKRSNTAGEDGELFLKVLIPSYAAGSIIGKGGQTIVQLQRETGATIKLS 70
Query: 223 AT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF------SSN 273
+ P ER+ V S ES S + + +G ++ L + N
Sbjct: 71 KSKDFYPGTTERVCLVQGSA--ESLLS-VHNFIAEKVREVPQGGTKNDLGVLLPPQTTIN 127
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
A+L+V + G ++GKGG + + + +G +++ Q + ++RVV +SG
Sbjct: 128 AERAKQAKLIVPNTTAGLIIGKGGATVRSIMEESGAWVQL--SQKPAGPNLHERVVTVSG 185
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGT--LNTARTRSTSSVLTET---SPYS-----RLKDPA 383
E S+V+ A+ ++ + R++ GT LN + T S V SPY+ ++ P
Sbjct: 186 EPSQVQKAIRSIIHKSREDPPQGTTHLNISYTNSQGPVANSNPTGSPYAGGSAEQVLTPF 245
Query: 384 SFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT----VTGVHLRG--- 436
+ A++ G D L +S +L+ +S T V GVH
Sbjct: 246 QPAPPAPPAIT----------GGDLLAISAALNTLASYGYSTGMGFNPLVGGVHPAAVNL 295
Query: 437 -SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLR 495
+S G G L G++S + T+E+ VPE ++G++ G+ G L+ +
Sbjct: 296 LASYTGEAGPALGLGGGGILLEKMGAES-VTGKETLEMAVPETLVGAILGKGGKTLVEYQ 354
Query: 496 QISGAKVIVH---EPRLGSTDRIVVISGTPDETQAAQSLL 532
+++GA++ + E G+ R V I+G P TQAAQ L+
Sbjct: 355 ELTGARIQISKKGEFVPGTRSRKVTITGPPGATQAAQYLI 394
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 161/372 (43%), Gaps = 79/372 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT------ 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 76 SAIFSAFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H +L G LR +++ R Q H+ V+
Sbjct: 244 HTAALAAL--------------AGSQLR-TANANRAQQQ---QHE-----------MTVS 274
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N + I+ G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 275 NDLIGCII---------GKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 325
Query: 525 TQAAQSLLQAFI 536
AQ L+ I
Sbjct: 326 VALAQYLINMRI 337
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 127 FGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEV 186
+ +QE+ + + + + + A + I++ +A+ L+ R A + R QQQ+
Sbjct: 211 YAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAALAGSQLRTANAN-RAQQQQH 269
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL-----ITVTASEGP 241
+ SND +G +IGKGGT I ++ +GA I + C+ER T+T S P
Sbjct: 270 EMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEEREGGNTDRTITISGNP 323
Query: 242 ES 243
+S
Sbjct: 324 DS 325
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 149/360 (41%), Gaps = 67/360 (18%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTA----- 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
AV S + E +N G + V RLV+ ++Q G L+GK GT I
Sbjct: 71 -----AVFHAVSMIAFKLDEDLCSAPANGGTVSRPPVTLRLVIPASQCGSLIGKAGTKIK 125
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V +SG V DA+
Sbjct: 126 EIRETTGAQVQVAGDLL---PNSTERAVTVSG----VPDAIILC---------------- 162
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R +V+ E+ P A+ H P L+ G L + S
Sbjct: 163 -VRQICAVILESPPKG-----ATIPYH-----------PSLSLGTVLLSANQGFSVQSQY 205
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
T VT + G G GL+ G+ + S E +VP ++IG
Sbjct: 206 GGVTPAEVTKLQQLS----GHAVPFGSPSMVPGLDPGAQTSSQ-------EFLVPNDLIG 254
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGPS 541
V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L+ A + T S
Sbjct: 255 CVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKS 314
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 6/181 (3%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
+ + +V FRI+ + ++G VIGK G I+ ++ E A I + + +ER+I +++ +
Sbjct: 63 QAKAHDVLFRIVVPSKQIGKVIGKVGCRIQKVREETKATIKIADAVARYEERVIIISSKD 122
Query: 240 GPESRYSPAQKAVVLVFSRLI--EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
E+ + A+KA+ + + ++ +G+S + L + RL++A +Q G L+G G
Sbjct: 123 N-ENSVTDAEKALQQIAALILKEDGSSIEELKVGTGHVAANTIRLLIAGSQAGSLIGASG 181
Query: 298 TIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I ++R +G SI I++ +QL C S E+DRVVQISG+ V A+ + +LR +
Sbjct: 182 QNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILAVLKALEEIGNQLRKTNL 241
Query: 355 S 355
+
Sbjct: 242 A 242
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 1/163 (0%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FRIL KVGA+IG+ G I+ + ++ A I + P ER + ++A + P+ SP
Sbjct: 116 FRILVPAQKVGAIIGRKGEFIKKMCEQSKARIKILDGPPGVTERAVIISAKDEPDEPISP 175
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A ++ + R+ +G+ + + RL+V ++Q G L+GK G I ++ +
Sbjct: 176 AMDGLLRIHKRITDGSDGEFGQPQRGASNVGPTRLLVPASQAGSLIGKQGATIKSIQDSS 235
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
+ +RI+ + + +DRVV+I GE V AV + LR
Sbjct: 236 KSVVRIVEN-VPPVALNDDRVVEIQGEPLGVHKAVELIANHLR 277
>gi|90086375|dbj|BAE91740.1| unnamed protein product [Macaca fascicularis]
Length = 283
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 119/277 (42%), Gaps = 49/277 (17%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLVV + Q G L+GKGG I E+R+ TG +++ D L + +R + I+G
Sbjct: 25 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGVPQS 81
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYS----------RLKDPASFGV 387
V + V + + + TL+ + ++ + P S R D A +
Sbjct: 82 VTECVKQICLVMLE-----TLSQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAGY-P 135
Query: 388 HSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG 447
H++ HD PPL + + T++ + L + V R S
Sbjct: 136 HAT----HDLEGPPL----------------DAYSIQGQHTISPLDLAKLNQVARQQSHF 175
Query: 448 LSHHKGGLELGSGSKSAIV----------TNTTVEIIVPENVIGSVYGENGSNLLRLRQI 497
H G G S S V T TT E+ +P N+IG + G G+N+ +RQ+
Sbjct: 176 AMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQM 235
Query: 498 SGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
SGA++ + P GS+ R V I+G+ AQ L+ A
Sbjct: 236 SGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 272
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 256 FSRLIEGTSEKGLDFSSN--KGLLVNA--------RLVVASNQVGCLLGKGGTIISEMRK 305
F+ + GT G+D SS KG + L + +N +GC++G+ G I+E+R+
Sbjct: 175 FAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQ 234
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
++G I+I + + R V I+G + + A Y + RL
Sbjct: 235 MSGAQIKIAN----PVEGSSGRQVTITGSAASISLAQYLINARL 274
>gi|116007842|ref|NP_001036619.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
gi|113194920|gb|ABI31266.1| mushroom-body expressed, isoform D [Drosophila melanogaster]
Length = 539
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/368 (24%), Positives = 161/368 (43%), Gaps = 78/368 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L + +R V +SG ++ +Y + + ++ G R +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQICLVMLESPPRGATIPYRPKP 191
Query: 366 --TSSVLTETSPYSRLKDPASFGVHSSVAV-SHDFSQPPL---------------TQGMD 407
T V+ L + +F + + AV + + ++ PL T G++
Sbjct: 192 QVTGPVI--------LANGQAFTIQGNYAVPTQEVAKNPLASLAALGLAGMNPASTGGIN 243
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
H +L G LR ++ R Q H+ V+
Sbjct: 244 HTAALAAL--------------AGSQLRTANPANRAQQQ---QHE-----------MTVS 275
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N + I+ G+ G+ + +RQISGA + + E G+TDR + ISG PD
Sbjct: 276 NDLIGCII---------GKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 326
Query: 525 TQAAQSLL 532
AQ L+
Sbjct: 327 VALAQYLI 334
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 127 FGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEV 186
+ +QE+ + + + + + A + I++ +A+ L+ R A R QQQ+
Sbjct: 211 YAVPTQEVAKNPLASLAALGLAGMNPASTGGINHTAALAALAGSQLRTANPANRAQQQQ- 269
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL-----ITVTASEGP 241
+ SND +G +IGKGGT I ++ +GA I + C+ER T+T S P
Sbjct: 270 -HEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI----SNCEEREGGNTDRTITISGNP 324
Query: 242 ES 243
+S
Sbjct: 325 DS 326
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT S
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVTGST------ 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISE 302
+ KA L+ + E S+ S G+ + RL+V ++Q G L+GKGG+ I E
Sbjct: 67 NAIFKAFTLICKKFEEWCSQFQDINSGGSGVPRPPITLRLIVPASQCGSLIGKGGSKIKE 126
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+R+VTG SI++ S+ L + +R V ISG + +Y++
Sbjct: 127 IREVTGASIQVASEMLP---NSTERAVTISGTGEAITQCIYHI 166
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQ 526
T E+ VP +IG + G+ G+ + +RQISGA + + + G TDR + ISG PD
Sbjct: 320 THEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVA 379
Query: 527 AAQSLLQAFI 536
AQ L+ I
Sbjct: 380 LAQYLINMRI 389
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + ISG V A
Sbjct: 323 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCDDRESGVTDRTITISGNPDAVALA 381
Query: 342 VYNVTGRL 349
Y + R+
Sbjct: 382 QYLINMRI 389
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 103 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGT 155
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGAVIG+ G I+ + E+ A I V P ER + ++A + P++
Sbjct: 106 ESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTE 165
Query: 245 YSPAQKAVVLVFSRLIEG---TSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
PA ++ V R+ +G +++ + N G RL+V ++Q G L+GK G I
Sbjct: 166 LPPAVDGLLRVHRRITDGLETETDQPQRATVNTG---PTRLLVPASQAGSLIGKQGATIK 222
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++ + +RI+ + + +DRVV+I GE AV + LR
Sbjct: 223 SIQDASKCVLRIVEN-VPPVALNDDRVVEIQGEPHDSHKAVELIASHLR 270
>gi|194701786|gb|ACF84977.1| unknown [Zea mays]
Length = 344
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 158/363 (43%), Gaps = 77/363 (21%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ + R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 36 KEKPIHLRFLVSNASAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 94
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ +G +F+ + RLVV ++ G ++GKGG
Sbjct: 95 -----LFGEVMKAMELILEKLL----AEGEEFNEAEA-RPKVRLVVPNSSCGGIIGKGGA 144
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G F +A+ + +L D H+
Sbjct: 145 TIKSFIEESHAGIK-ISPQDNNYVGLHDRLVTVTGTFDNQMNAIDLILKKLSEDVHYPAN 203
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH-----LGLS 412
L++ PY+ L P+ + V V + Q P +++ G
Sbjct: 204 LSSP------------FPYAGLTFPS----YPGVPVGYMIPQVPYNNAVNYGPNNGYGGR 247
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ + PS+P +R S ++ ++
Sbjct: 248 YQNNKPSTP------------MR-------------------------SPASNEAQESLT 270
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQ 529
I + + IG+V G G N+ + Q SGA++ + + G++DR V I+GT + + A+
Sbjct: 271 IGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFISGTSDRKVTITGTSEAIRTAE 330
Query: 530 SLL 532
S++
Sbjct: 331 SMI 333
>gi|225429818|ref|XP_002280789.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 420
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 81/359 (22%), Positives = 159/359 (44%), Gaps = 46/359 (12%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
+FR++ VG++IG+ G II+ + GA I V + + ++ ++A E P R S
Sbjct: 28 AFRLIVPGSAVGSIIGREGKIIKRISEGTGARIHVISLPAGTTDCIVLISAKEQPHLRLS 87
Query: 247 PAQKAVVLVFSRL-----IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
PA +AV+ VF R+ I+G G+ +++ L + +V +Q ++GK G+ +
Sbjct: 88 PAMEAVIEVFKRVTGLYPIDGN---GMCSKASEVKLSSVTFLVGYSQALSIIGKEGSRVR 144
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
+ + +GT++ I+S ++ +S ++R+++I G+ KV A+ V LR
Sbjct: 145 AIEESSGTTVGILS-RVPFYVSPDERIIKIQGQVLKVMAAMEAVLYHLR----------- 192
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC--PS 419
L ++S + G+ +Q L L HS P
Sbjct: 193 ------LYLVDSSVIPAFSEKCKTGI---------------SQADQSLSLHHSTPAHQPG 231
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK--GGLELGSGSKSAIVTNTTVEIIVPE 477
+ +++ + G + + + +S + GGL L ++A T I +P
Sbjct: 232 ADSMYSL-PLLGHEAKVEAKIPSSYSSLYAQEPVLGGLPLRRSDRAAAPAQRTERIKIPF 290
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ + G G + +R+ SG+ + + E R + I+ + GT + Q AQ L++ +
Sbjct: 291 SAAKDIIGIAGETIDHIRRTSGSIITIEEDRSLPDEYILEVRGTTSQLQTAQQLIEELL 349
>gi|48716278|dbj|BAD22893.1| KH domain-containing protein NOVA-like [Oryza sativa Japonica
Group]
gi|48716520|dbj|BAD23125.1| KH domain-containing protein NOVA-like [Oryza sativa Japonica
Group]
Length = 343
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 148/358 (41%), Gaps = 68/358 (18%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 37 KEKPTHLRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 95
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ E S+ RLVV ++ G ++GKGG+
Sbjct: 96 -----LFDEVIKAMELILEKLLAEGEE-----SNEAEARPKVRLVVPNSSCGGIIGKGGS 145
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G A+Y + +L D H+
Sbjct: 146 TIKSFIEDSHAGIK-ISPQDNNFVGLHDRLVTVTGPLDHQMRAIYLILSKLSEDVHYPPN 204
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
L++ PY+ L P+ GV + + G + G + +
Sbjct: 205 LSSP------------FPYAGLGFPSYPGVPVGYMIPQVPYNNAVNYGPNGYGGRYQNNK 252
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
PS+P A ++ I + +
Sbjct: 253 PSTPMRSPANN-------------------------------------DAQDSLTIGIAD 275
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
IG+V G G N+ + Q SGA++ + + G+++R V I+GT + QAA+S++
Sbjct: 276 EHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSERKVTITGTSEAIQAAESMI 333
>gi|63115359|gb|AAY33858.1| KH domain-containing protein [Betula platyphylla]
Length = 166
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVK 339
RL+V ++++GCL+GKGG I++EMR++T +IRI+S + L K SE+D +VQISG+ K
Sbjct: 9 RLLVPTSRIGCLIGKGGAIVTEMRRLTKANIRILSKENLPKVASEDDEMVQISGDLDVAK 68
Query: 340 DAVYNVTGRLRDNHF 354
DA+ V RLR N F
Sbjct: 69 DALMQVVTRLRANLF 83
>gi|345566886|gb|EGX49826.1| hypothetical protein AOL_s00076g710 [Arthrobotrys oligospora ATCC
24927]
Length = 379
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 157/359 (43%), Gaps = 42/359 (11%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT
Sbjct: 41 DEDYAQSPLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG 100
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ KA +V L++ S G ++ G RL+++ NQ+G ++G+ G
Sbjct: 101 N------LDGVAKAYAMVAQTLVD--SPPGAIPTTPMGTHP-VRLLISHNQMGTIIGRQG 151
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 152 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGSADGIRQAIWEIGKCLVDDWQRGT 208
Query: 358 ---LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
L RS +S T +SP A + + ++ P+ G G S
Sbjct: 209 GTILYNPAVRSNTSHGTGSSPSVISNGGAGTSGPTDRFTNERPNRGPVRTGN---GTDFS 265
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
PS P+ RG SD S + + G EL T I
Sbjct: 266 EPSPSFPR------------RGHSDSTSRASAPAPNTENGEEL-----------QTQNIS 302
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I G+P + A LL
Sbjct: 303 IPADMVGCIIGRGGSKISEIRKSSGARISIAKAPHDDTGERMFTIVGSPQSNEKALYLL 361
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGAVIG+ G I+ + E+ A I V P ER + ++A + P++
Sbjct: 106 ESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTE 165
Query: 245 YSPAQKAVVLVFSRLIEG---TSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
PA ++ V R+ +G +++ + N G RL+V ++Q G L+GK G I
Sbjct: 166 LPPAVDGLLRVHRRITDGLETETDQPQRATVNTGP---TRLLVPASQAGSLIGKQGATIK 222
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++ + +RI+ + + +DRVV+I GE AV + LR
Sbjct: 223 SIQDASKCVLRIV-ENVPPVALNDDRVVEIQGEPHDSHKAVELIASHLR 270
>gi|302770987|ref|XP_002968912.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
gi|300163417|gb|EFJ30028.1| hypothetical protein SELMODRAFT_409630 [Selaginella moellendorffii]
Length = 393
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 146/358 (40%), Gaps = 65/358 (18%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVGA+IG+ G ++ + E + I + +P ER++ V+A E PE+ SP
Sbjct: 51 FRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEATISP 110
Query: 248 AQKAVVLVFSRLIEGTSEKG--LDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A ++ V R+ EG+S G ++ LV +RL+V + Q G L+G+
Sbjct: 111 AMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQSRLLVTATQAGSLIGR---------- 160
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSGT 357
++L C +DR+V++ GE KV+ A+ V LR F
Sbjct: 161 ---------QEELPLCALADDRMVEVQGEILKVQKAMELVVSHLRKFLVDRSVLQLFEFN 211
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
++ A +RS + VH+ SQ QG ++ S
Sbjct: 212 VSFAGSRSI-----------------GYKVHNGELQRAMSSQ---VQGQQAAAIATS--- 248
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH-------HKGGLELGSGSKSAIVTNTT 470
W TV S+D +Q + G +++ S + +A +
Sbjct: 249 ------WATPTVAATTPYSSTDYYADQAQSQHYAVSVYGGDPGRVDVTSTTPAAPAETVS 302
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
++ VP ++ G G+N+ +R+ SGA + + E + + + G + Q A
Sbjct: 303 QQLQVPLLYADAIIGTAGANINYMRRTSGATISIQETPNAPGEMTIEVHGQSTQVQTA 360
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 7/169 (4%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
E FRIL KVGAVIG+ G I+ + E+ A I V P ER + ++A + P++
Sbjct: 106 ESVFRILVPTTKVGAVIGRKGDFIKKMCEESRARIKVLEGPPAVPERAVMISAKDEPDTE 165
Query: 245 YSPAQKAVVLVFSRLIEG---TSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
PA ++ V R+ +G +++ + N G RL+V ++Q G L+GK G I
Sbjct: 166 LPPAVDGLLRVHRRITDGLETETDQPQRATVNTGP---TRLLVPASQAGSLIGKQGATIK 222
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++ + +RI+ + + +DRVV+I GE AV + LR
Sbjct: 223 SIQDASKCVLRIV-ENVPPVALNDDRVVEIQGEPHDSHKAVELIASHLR 270
>gi|302816563|ref|XP_002989960.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
gi|300142271|gb|EFJ08973.1| hypothetical protein SELMODRAFT_428421 [Selaginella moellendorffii]
Length = 393
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 144/360 (40%), Gaps = 69/360 (19%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVGA+IG+ G ++ + E + I + +P ER++ V+A E PE+ SP
Sbjct: 51 FRLIVPLHKVGAIIGRKGEFVKRMCEETRSRIKILDGVPGTLERIVLVSAKEDPEATISP 110
Query: 248 AQKAVVLVFSRLIEGTSEKG--LDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A ++ V R+ EG+S G ++ LV +RL+V + Q G L+G+
Sbjct: 111 AMDGLLRVHRRVTEGSSGDGEPVEHIILPSGLVQSRLLVTATQAGSLIGR---------- 160
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD--------NHFSGT 357
++L C +DR+V++ GE KV+ A+ V LR F
Sbjct: 161 ---------QEELPLCALADDRMVEVQGEILKVQKAMELVVSHLRKFLVDRSVLQLFEFN 211
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
++ A +RS + VH+ SQ QG ++ S
Sbjct: 212 VSFAGSRSI-----------------GYKVHNGELQRAMSSQ---VQGQQAAAIATS--- 248
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV------ 471
W TV S+D +Q S H G VT+TT
Sbjct: 249 ------WATPTVAATTPYSSTDYYADQAQ--SQHYAVSMYGGDPGRVDVTSTTPAPPAES 300
Query: 472 ---EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
++ VP ++ G G+N+ +R+ SGA + + E + + + G + Q A
Sbjct: 301 VSQQLQVPLLYADAIIGTAGANINYMRRTSGATISIQETPNAPGEMTIEVHGQSTQVQTA 360
>gi|222623934|gb|EEE58066.1| hypothetical protein OsJ_08922 [Oryza sativa Japonica Group]
Length = 313
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 148/358 (41%), Gaps = 68/358 (18%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 7 KEKPTHLRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 65
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ E S+ RLVV ++ G ++GKGG+
Sbjct: 66 -----LFDEVIKAMELILEKLLAEGEE-----SNEAEARPKVRLVVPNSSCGGIIGKGGS 115
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G A+Y + +L D H+
Sbjct: 116 TIKSFIEDSHAGIK-ISPQDNNFVGLHDRLVTVTGPLDHQMRAIYLILSKLSEDVHYPPN 174
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
L++ PY+ L P+ GV + + G + G + +
Sbjct: 175 LSSP------------FPYAGLGFPSYPGVPVGYMIPQVPYNNAVNYGPNGYGGRYQNNK 222
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
PS+P A ++ I + +
Sbjct: 223 PSTPMRSPANN-------------------------------------DAQDSLTIGIAD 245
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
IG+V G G N+ + Q SGA++ + + G+++R V I+GT + QAA+S++
Sbjct: 246 EHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSERKVTITGTSEAIQAAESMI 303
>gi|116787292|gb|ABK24450.1| unknown [Picea sitchensis]
Length = 357
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 92/360 (25%), Positives = 163/360 (45%), Gaps = 73/360 (20%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESR 244
R+L SN G+VIGKGG + Q+++GA I + P +R+I VT S
Sbjct: 48 LRLLVSNAAAGSVIGKGGATVSDFQTQSGARIQLSRNHEFFPGTTDRIILVTGS------ 101
Query: 245 YSPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ A L+ +L+ E +D +++ RLV+ ++ G ++GKGG I
Sbjct: 102 INEILTAANLILQKLLSEAEDNNDVDEKTSQ-----VRLVLPNSVCGGIIGKGGATIKSF 156
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGTLNTA 361
+ + SI++ S DQ+L +S DR+V I+G + A++ + +L D +++ N
Sbjct: 157 VEHSQASIKLSSQDQILPGVS--DRLVTITGTLEQQLRAIFLIVSKLAEDPNYAQYANAP 214
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ + SV G+ + ++ P+ G+ + G S
Sbjct: 215 LSYTGGSVA---------------GIQ---GIPGGYT--PVGYGLPNYGSS--------- 245
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG-----SGSKSAIVTNTTVEIIVP 476
V GV+ R + +G L + L +G SG+ T+V++ VP
Sbjct: 246 -------VYGVNARNN----KGLMAPLVAMRSPLPIGVPLVASGAL------TSVKMAVP 288
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLLQ 533
++ +G + G G +L ++Q+SGAK+ + + G+ DR V ISG D Q A+ +L+
Sbjct: 289 DDRVGVIVGRAGRTILDIQQVSGAKIKISDRGDFISGTNDRQVTISGPIDAVQHARHMLE 348
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 75/244 (30%)
Query: 170 ESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA---TMP 226
E++ +D +T Q R++ N G +IGKGG I++ + A I + + +P
Sbjct: 119 EAEDNNDVDEKTSQ----VRLVLPNSVCGGIIGKGGATIKSFVEHSQASIKLSSQDQILP 174
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE------------------------- 261
+RL+T+T + + R A+ L+ S+L E
Sbjct: 175 GVSDRLVTITGTLEQQLR------AIFLIVSKLAEDPNYAQYANAPLSYTGGSVAGIQGI 228
Query: 262 --------------GTSEKGLDFSSNKGL----------------------LVNARLVVA 285
G+S G++ +NKGL L + ++ V
Sbjct: 229 PGGYTPVGYGLPNYGSSVYGVNARNNKGLMAPLVAMRSPLPIGVPLVASGALTSVKMAVP 288
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
++VG ++G+ G I ++++V+G I+ ISD+ NDR V ISG V+ A + +
Sbjct: 289 DDRVGVIVGRAGRTILDIQQVSGAKIK-ISDRGDFISGTNDRQVTISGPIDAVQHARHML 347
Query: 346 TGRL 349
RL
Sbjct: 348 EQRL 351
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 92/173 (53%), Gaps = 14/173 (8%)
Query: 194 NDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVV 253
+ +VG++IGK G I+ ++ ++GA I++ C ER++T+T S G KA +
Sbjct: 10 HKEVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITGSTGT------INKAFI 61
Query: 254 LVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI 313
++ ++L + + L S K + RL+V + Q GC++GKGG+ I E+R+ TG SI++
Sbjct: 62 MICAKLQQDL--QALPNSIPKPP-ITMRLIVPATQCGCIIGKGGSKIKEIREATGASIQV 118
Query: 314 ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST 366
S+ L S +R V ISG + D + N+ L + G R + T
Sbjct: 119 ASEMLP---SSTERAVTISGSADSIVDCMRNICQILLEAPAKGNTLPYRPKPT 168
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 91/167 (54%), Gaps = 22/167 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 15 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTN-- 67
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL------VNARLVVASNQVGCLLGKGGTI 299
A+ FS LI E+ + S G + + RL+V ++Q G L+GKGG+
Sbjct: 68 -----AIFKAFS-LICKKFEEFQELQSGGGSMGIPKPPITLRLIVPASQCGSLIGKGGSK 121
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
I E+R+VTG SI++ S+ L + +R V ISG + +Y++
Sbjct: 122 IKEIREVTGASIQVASEMLP---NSTERAVTISGTSEAITQCIYHIC 165
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTD 513
L+ G GS T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+
Sbjct: 86 LQSGGGSMGIPKPPITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTE 145
Query: 514 RIVVISGT 521
R V ISGT
Sbjct: 146 RAVTISGT 153
>gi|74141926|dbj|BAE41029.1| unnamed protein product [Mus musculus]
Length = 278
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL 402
+SS + YS D ASF S+ ++ D PPL
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL 223
>gi|242063550|ref|XP_002453064.1| hypothetical protein SORBIDRAFT_04g037690 [Sorghum bicolor]
gi|241932895|gb|EES06040.1| hypothetical protein SORBIDRAFT_04g037690 [Sorghum bicolor]
Length = 343
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 77/363 (21%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 36 KEKPTHLRFLVSNTAAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 94
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ +G +F+ + RLVV ++ G ++GKGG
Sbjct: 95 -----LFDEVMKAMELILEKLL----AEGEEFNEAEA-RPKVRLVVPNSSCGGIIGKGGA 144
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G F +A+ + +L D H+
Sbjct: 145 TIKSFIEESHAGIK-ISPQDNNYVGLHDRLVTVTGTFDNQMNAIDLILKKLSEDVHYPPN 203
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH-----LGLS 412
L++ PY+ L +F + V V + Q P +++ G
Sbjct: 204 LSSP------------FPYAGL----TFPNYPGVPVGYMIPQVPYNNAVNYGPNNGYGGR 247
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
+ + PS+P +R S ++ ++
Sbjct: 248 YQNNKPSTP------------MR-------------------------SPASNEAQESLT 270
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQ 529
I + + IG+V G G N+ + Q SGA++ + + G++DR V I+GT + + A+
Sbjct: 271 IGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFISGTSDRKVTITGTSEAIRTAE 330
Query: 530 SLL 532
S++
Sbjct: 331 SMI 333
>gi|194384644|dbj|BAG59482.1| unnamed protein product [Homo sapiens]
Length = 301
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 108/221 (48%), Gaps = 15/221 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSSVLTETSP---YSRLKDPASFG-VHSSVAVSHDFSQPPL 402
+SS + YS D ASF S+ ++ D PPL
Sbjct: 183 SSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPL 223
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 101/196 (51%), Gaps = 23/196 (11%)
Query: 167 LSLESD-RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM 225
+ E+D + + R+++ + R+L + G++IGKGG I L+S+ A I T+
Sbjct: 1 MKREADGEMGSPQKRSRRGDEEVRLLIPSKVAGSIIGKGGQNITKLRSQYKASI----TV 56
Query: 226 PECD--ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
P+C ER++T+++ + + + ++ E G + N+ ++ R++
Sbjct: 57 PDCPGPERMLTLSSD----------LDTICNIVTDVVPNLEENGGRVNGNE---LDLRMM 103
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
+ +Q GC++GK G I E+R+ TG I+I S+ + DR++QI GE SK D++
Sbjct: 104 IHQSQAGCVIGKAGYKIKELREKTGARIKIFSNVAPQST---DRIIQIVGEPSKCVDSIR 160
Query: 344 NVTGRLRDNHFSGTLN 359
+ ++ N G +N
Sbjct: 161 EIITLIKSNPIKGIVN 176
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 5/95 (5%)
Query: 445 SQGLSH---HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK 501
S GLS GG+ G + A + TT ++ +P+++ G++ G+ G + ++RQ SGA
Sbjct: 313 SNGLSQPPLQSGGM--GPQNGGATGSKTTTQVTIPKDLAGAIIGKGGGRIRKIRQDSGAG 370
Query: 502 VIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ + EP GS DRI+ ISGTP++ Q AQ LLQ +
Sbjct: 371 ITIDEPLPGSNDRIITISGTPNQIQMAQYLLQQSV 405
>gi|242039711|ref|XP_002467250.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
gi|241921104|gb|EER94248.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
Length = 588
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L KVG +IG G +R L E A + + E+ + + E PE P
Sbjct: 57 FRMLIPAQKVGVIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQPEEPLPP 116
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A A++ V+ + I +++ LD S+ G++V R++V S Q L+G+ G +I+ + + +
Sbjct: 117 AMDALLRVYQQTI---NDESLDVGSD-GVIVR-RILVPSEQAESLIGEHGVMINSIMEAS 171
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
T IR++ L E DRVV+I G ++V A+ V LR
Sbjct: 172 QTDIRVLDGDLPPVALEEDRVVEIWGLPARVHKALELVASHLR 214
>gi|444519891|gb|ELV12903.1| Poly(rC)-binding protein 3 [Tupaia chinensis]
Length = 300
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 135/333 (40%), Gaps = 63/333 (18%)
Query: 206 TIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265
TI + ++GA I++ C ER++T+T GP A+ F+ + E
Sbjct: 15 TIRLLMHGKSGARINISEG--NCPERIVTIT---GPTD-------AIFKAFAMIAYKFEE 62
Query: 266 KGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC 321
++ SN V RLVV ++Q G L+GKGG+ I E+R+ TG +++ D L
Sbjct: 63 DIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP-- 120
Query: 322 ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD 381
+ +R V ISG + V + + ++ G R + S+ +
Sbjct: 121 -NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVI-------FAG 172
Query: 382 PASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG 441
++ + A+ H D L H L +P QT + G
Sbjct: 173 GQAYTIQGQYAIPHP----------DQLTKLHQLAMQQTPFPPLGQT-------NPAFPG 215
Query: 442 RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK 501
S S H E+ +P ++IG + G G+ + +RQ+SGA+
Sbjct: 216 LDASPPASTH--------------------ELTIPNDLIGCIIGRQGTKINEIRQMSGAQ 255
Query: 502 VIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ + GS++R + I+GTP AQ L+ A
Sbjct: 256 IKIANATEGSSERQITITGTPANISLAQYLINA 288
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 105/258 (40%), Gaps = 64/258 (24%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 40 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 99
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 100 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 159
Query: 246 SPAQKAVVLVF----SRLIEG------------------------------TSEKGLDFS 271
P + ++F + I+G + GLD S
Sbjct: 160 RPKPASTPVIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGLDAS 219
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I
Sbjct: 220 PPAS---THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITI 272
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + + A Y + RL
Sbjct: 273 TGTPANISLAQYLINARL 290
>gi|67523265|ref|XP_659693.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
gi|40745765|gb|EAA64921.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
Length = 745
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 172/417 (41%), Gaps = 34/417 (8%)
Query: 141 DILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQE----VSFRILCSNDK 196
D Q ++V+ AP +S ++ + + + + Q+ + R + S+ +
Sbjct: 59 DADGQGDTVVPDAPKGGVSETQPIQSTASHGEAAGNQSEQQRPQDESNWIHIRAVISSQE 118
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VIGKGG + ++ +GA +V ER++TV+ GP Q AV F
Sbjct: 119 AATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP-------QDAVAKAF 168
Query: 257 SRLIEGTSEKGLDFSSN-KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+I + + LD +S + RL++ +G ++GKGGT I E++ +G + S
Sbjct: 169 GLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLN-AS 227
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLT 371
D L +E R + I G V A Y V L + F G +A TRS
Sbjct: 228 DACLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRSGGPAGA 285
Query: 372 -----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS----SPK 422
+ PY +G H H Q G + H P+ P
Sbjct: 286 VPGGMQVVPYVPQPAGGQYG-HPDTFKRHHPGQARAGAGAYGVPYLHGQHAPAPVAPQPM 344
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT-TVEIIVPENVIG 481
+ A G Q + +GG + A+ T +I +P +++G
Sbjct: 345 HYGAPQTPYAGAGPHQPTPYGAPQA-AQPRGGPTPAAPVGGAMPGQPLTQQIYIPNDMVG 403
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT + Q A +L + + T
Sbjct: 404 AIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYMLYSRLDT 460
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 388 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE----NSNERLVTITGT 443
Query: 335 FSKVKDAVYNVTGRL---RDNHFSGTLNTART 363
+ A+Y + RL R H SG + T
Sbjct: 444 QECNQMALYMLYSRLDTYRAAHSSGQFDITTT 475
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 148/354 (41%), Gaps = 48/354 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA-------- 237
+ +RILC + +G+VIGK G +I +++ E+ A + V P +R+IT+
Sbjct: 36 IVYRILCPDGVIGSVIGKSGKVINSIRHESRARVKVVDPFPGAKDRIITIYCHIKEKEDV 95
Query: 238 ----SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--ARLVVASNQVGC 291
+ AQ A++ V + + + G S+K L +++V ++Q
Sbjct: 96 DVDDDFNHTNPLCAAQDALLKVHAAISNAVASLG---DSDKRLRDKEECQILVPASQSAN 152
Query: 292 LLGKGGTIISEMRKVTGTSIRIIS----DQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
++GK G I +R T TSI+II+ D C + D + I+GE VK A++ V+
Sbjct: 153 IIGKAGATIKRLRSKTRTSIKIIAKDSTDPTHSCAMDFDNFLLITGESEAVKKALFAVSA 212
Query: 348 RLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMD 407
+ + + T + P F ++ VS S PP+
Sbjct: 213 IMYKFNPKEEIPLEATVPEPPPSIIIPSDVPIYQPGGFYPNAEPIVSSR-SVPPI----- 266
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
LG +H + L+G D+G W S G+ S+
Sbjct: 267 -LGATHIPE-----------------LQGYGDMGSSWPVYTSTLPVVPSFGNVSR---YE 305
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
+ ++ P + IG V G+ GS + +RQ SGA++ V + + + I+ ++ T
Sbjct: 306 ELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADRDECIITVTAT 359
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ +E+ R+LC DK+G VIGKGG+ I++++ +GA I V T + DE +ITVTA+E
Sbjct: 302 SRYEELIIRVLCPFDKIGRVIGKGGSTIKSIRQASGARIEVDDTKADRDECIITVTATE 360
>gi|425769369|gb|EKV07864.1| hypothetical protein PDIP_71440 [Penicillium digitatum Pd1]
gi|425770994|gb|EKV09451.1| hypothetical protein PDIG_62050 [Penicillium digitatum PHI26]
Length = 364
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 88/371 (23%), Positives = 164/371 (44%), Gaps = 60/371 (16%)
Query: 166 PLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM 225
PL E D E++ R + S+ + G +IGK G + L+ E G V +
Sbjct: 33 PLKTEEDYAVA--------ELTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVV 84
Query: 226 PECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVV 284
P +R++TVT + +A +V L+EG + G+ SN G RL++
Sbjct: 85 PGVHDRVLTVTG------QLRSLARAYAIVAKGLLEGAPQMGMGGIVSNNGTHP-IRLLI 137
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344
+ NQ+G ++G+ G I ++ +G +R+++ + + S +R+V++ G ++ A++
Sbjct: 138 SHNQMGTIIGRQGLKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWE 194
Query: 345 VTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPLT 403
+ L D+ R T +VL +PA V +S++ S S PP
Sbjct: 195 IGKCLLDDW---------QRGTGTVLY---------NPA---VRASLSGSQPLNSNPPAG 233
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSK 462
G + S + + ++ + + R +SD G RG+ Q + G E+
Sbjct: 234 NGYQNNANSRQYNRTGNGADFSDGS---YNRRSNSDAGNRGYPQ---VTEDGEEI----- 282
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGT 521
T I +P +++G + G G+ + +R+ SGA++ I P + +R+ I G+
Sbjct: 283 ------QTQNISIPADMVGCIIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGS 336
Query: 522 PDETQAAQSLL 532
+ A LL
Sbjct: 337 AQANEKALYLL 347
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 20/168 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--------VNARLVVASNQVGCLLGKGG 297
KA L+ + E S+ D + + RL+V ++Q G L+GKGG
Sbjct: 73 F---KAFTLICKKFEEWCSQF-HDVPGSGAGGGGGVSRPPITLRLIVPASQCGSLIGKGG 128
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+ I E+R+VTG SI++ S+ L + +R V ISG + +Y++
Sbjct: 129 SKIKEIREVTGASIQVASEML---PNSTERAVTISGTSEAITQCIYHI 173
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N T E+ VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD
Sbjct: 370 NQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDA 429
Query: 525 TQAAQSLLQ 533
AQ L+
Sbjct: 430 VALAQYLIN 438
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + I+G V A
Sbjct: 375 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGATDRTITITGNPDAVALA 433
Query: 342 VY 343
Y
Sbjct: 434 QY 435
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 110 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGT 162
>gi|412992928|emb|CCO16461.1| predicted protein [Bathycoccus prasinos]
Length = 703
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 98/173 (56%), Gaps = 15/173 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD----ERLITVTASEGPE- 242
+R+LC N + G+VIGK G ++ LQ ++GA I V P D ER+I + A + +
Sbjct: 267 YRLLCPNARAGSVIGKNGEKVKQLQRDSGAKIKV---EPPVDSTIAERVIAIEAQDVDDP 323
Query: 243 SRYSPAQKAVVLVFSRLI---EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
+ ++P+Q A++ + ++ E + G +N +++ RL++ S+Q+ ++G+ G +
Sbjct: 324 TVWAPSQIALLRIVETIVLDAERNTTIGAAEENNGHIVI--RLLLPSSQIRNVIGRFGNV 381
Query: 300 ISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRLR 350
I +R +G+ +R++ S + +C ND V+QIS E V A+ +T +LR
Sbjct: 382 IERIRVGSGSHVRVLPSSETPRCAKRNDEVLQISAESMENVASALAMITTQLR 434
>gi|326510613|dbj|BAJ87523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528939|dbj|BAJ97491.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 360
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 156/358 (43%), Gaps = 59/358 (16%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 45 KEKPTHLRFLVSNTAAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 103
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ LV +L+ E S+ RLVV ++ G ++GKGG
Sbjct: 104 -----LFDEVVKAMELVLEKLLSEGEE-----SNEAEARPKFRLVVPNSSCGGIIGKGGA 153
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V I+G + A++ + +L D H+
Sbjct: 154 TIKSFIEDSHAGIK-ISPQDNNFVGLHDRLVTITGPLNSQMRAIHLILSKLSEDVHYPPN 212
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
L++ PY+ L P+ ++V V + P +++
Sbjct: 213 LSS------------PFPYAGLGFPS---YPAAVPVGYMIPPVPYNNTVNY--------- 248
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
P + A G R ++K G + S + + + T I V +
Sbjct: 249 --GPNGYAAPGGGGGGGR------------YQNNKPGTPVRSPANNDAQESHT--IGVAD 292
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
IG+V G G N+ + Q SGA++ + + G++DR V I+G+ + QAA++++
Sbjct: 293 EHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSDRKVTITGSSEAIQAAEAMI 350
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 269 DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRV 328
D +K + R +V++ GC++GKGG+ I++ + +G I++ NDR+
Sbjct: 40 DHEDDKEKPTHLRFLVSNTAAGCIIGKGGSTINDFQSQSGARIQLSRSHEF-FPGTNDRI 98
Query: 329 VQISGEFSKVKDAVYNVTGRL 349
+ +SG F +V A+ V +L
Sbjct: 99 IMVSGLFDEVVKAMELVLEKL 119
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 20/168 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I++ + E+GA I++ C ER++TVT GP +
Sbjct: 18 LTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISDG--SCPERIVTVT---GPTNSI 72
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--------VNARLVVASNQVGCLLGKGG 297
KA L+ + E S+ D + RL+V ++Q G L+GKGG
Sbjct: 73 F---KAFTLICKKFEEWCSQFH-DIQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKGG 128
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+ I E+R+VTG SI++ S+ L + +R V ISG + +Y++
Sbjct: 129 SKIKEIREVTGASIQVASEMLP---NSTERAVTISGTSEAITQCIYHI 173
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N T E+ VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD
Sbjct: 370 NQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDA 429
Query: 525 TQAAQSLLQ 533
AQ L+
Sbjct: 430 VALAQYLIN 438
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + I+G V A
Sbjct: 375 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGATDRTITITGNPDAVALA 433
Query: 342 VYNVTGR 348
Y + R
Sbjct: 434 QYLINMR 440
Score = 39.7 bits (91), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 110 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGT 162
>gi|17384400|emb|CAD13196.1| hnRNP-E2 protein copy b [Xenopus laevis]
Length = 251
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 121/285 (42%), Gaps = 51/285 (17%)
Query: 250 KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
KA ++ +L E S + +++ V RLVV ++Q G L+GKGG I E+R+ TG
Sbjct: 2 KAFSMIIDKLEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 61
Query: 310 SIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSV 369
+++ D L + +R + I+G + + V + + ++ G R + +SS
Sbjct: 62 QVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS- 117
Query: 370 LTETSPYSRLKDPASFGVHSSVAVSHDFS--QPPLTQGMDHLGLSHSLDCPSSPKLWTAQ 427
P F + + ++ QP LT+ + L + S
Sbjct: 118 ------------PVIFAGGQAYTIQGQYAIPQPDLTK-LHQLAMQQS------------- 151
Query: 428 TVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGEN 487
H S G+S G+ A T+ E+ +P ++IG + G
Sbjct: 152 -----HFPMSHSGNTGFSGGID--------------ASAQATSHELTIPNDLIGCIIGRQ 192
Query: 488 GSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
G+ + +RQ+SGA++ + P GS DR V I+G+ AQ L+
Sbjct: 193 GAKINEIRQMSGAQIKIANPVEGSNDRQVTITGSTASISLAQYLI 237
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 58/235 (24%)
Query: 169 LESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATM 225
LE D +++ T + V+ R++ + G++IGKGG I+ ++ GA + V G +
Sbjct: 11 LEEDISSSMTNSTASSKPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML 70
Query: 226 PECDERLITVTA--------------------SEGPESRYSPAQKAVVLVFS-------- 257
P ER IT+ +G Y P + ++F+
Sbjct: 71 PNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQ 130
Query: 258 --------------RLIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLG 294
+L S + S N G + L + ++ +GC++G
Sbjct: 131 GQYAIPQPDLTKLHQLAMQQSHFPMSHSGNTGFSGGIDASAQATSHELTIPNDLIGCIIG 190
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ G I+E+R+++G I+I + NDR V I+G + + A Y + RL
Sbjct: 191 RQGAKINEIRQMSGAQIKIAN----PVEGSNDRQVTITGSTASISLAQYLINVRL 241
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + Q+V FRI+ + ++G VIGK G I+ ++ A I + + +ER+I +++ +
Sbjct: 94 RAKGQDVIFRIVVPSKQIGKVIGKEGCRIQKIREMTRANIKIADAIARHEERVIIISSKD 153
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA---RLVVASNQVGCLLGKG 296
E + A+KA+ + + LI D S V A RL++A +Q G L+G
Sbjct: 154 NDE-MVTDAEKALEQI-ANLILKEDNSSFDASKLTAGHVAANTIRLLIAGSQAGGLIGMS 211
Query: 297 GTIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTGRLR 350
G I ++R +G I +++ QL C S E+DRVVQ+SG+ S V A+ + +LR
Sbjct: 212 GQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVSTVMKALEEIGCQLR 268
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 98/185 (52%), Gaps = 13/185 (7%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R + +V FRI+ + K+G VIGK G I+ ++ + A I + + +ER+I +++ E
Sbjct: 45 RQARADVIFRIVVPSGKIGKVIGKQGHRIQKIREDTKATIKIADAVARHEERVIIISSKE 104
Query: 240 GPESRYSPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNA--------RLVVASNQVG 290
E+ + A+ A+ + ++ E G LVNA RL++A +Q G
Sbjct: 105 N-ENGATDAENALQRIAELILNEDDGGSSAGGGVEIGKLVNAGHVAANTIRLLIAGSQAG 163
Query: 291 CLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCIS--ENDRVVQISGEFSKVKDAVYNVTG 347
L+G G I ++R +G I +++ +QL C S E+DRVVQISG+ V A+ +
Sbjct: 164 SLIGMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYESDRVVQISGDVPVVLKALEEIGC 223
Query: 348 RLRDN 352
+LR+N
Sbjct: 224 QLREN 228
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+E++VPE ++G + G +GSN+ R+R SGA + VH + R + ++G+ + A
Sbjct: 259 VTMEMMVPETMMGGLIGRSGSNISRIRVESGAVIKVHGGKGAQKHRHIQLAGSSQQVALA 318
Query: 529 QSLLQAFILT 538
+ + +I +
Sbjct: 319 KQRVDEYIYS 328
>gi|259487459|tpe|CBF86155.1| TPA: KH domain RNA binding protein (AFU_orthologue; AFUA_2G04940)
[Aspergillus nidulans FGSC A4]
Length = 465
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 97/411 (23%), Positives = 169/411 (41%), Gaps = 34/411 (8%)
Query: 141 DILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQE----VSFRILCSNDK 196
D Q ++V+ AP +S ++ + + + + Q+ + R + S+ +
Sbjct: 59 DADGQGDTVVPDAPKGGVSETQPIQSTASHGEAAGNQSEQQRPQDESNWIHIRAVISSQE 118
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VIGKGG + ++ +GA +V ER++TV+ GP Q AV F
Sbjct: 119 AATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP-------QDAVAKAF 168
Query: 257 SRLIEGTSEKGLDFSSN-KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+I + + LD +S + RL++ +G ++GKGGT I E++ +G + S
Sbjct: 169 GLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQDASGARLN-AS 227
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLT 371
D L +E R + I G V A Y V L + F G +A TRS
Sbjct: 228 DACLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRSGGPAGA 285
Query: 372 -----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS----SPK 422
+ PY +G H H Q G + H P+ P
Sbjct: 286 VPGGMQVVPYVPQPAGGQYG-HPDTFKRHHPGQARAGAGAYGVPYLHGQHAPAPVAPQPM 344
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT-TVEIIVPENVIG 481
+ A G Q + +GG + A+ T +I +P +++G
Sbjct: 345 HYGAPQTPYAGAGPHQPTPYGAPQA-AQPRGGPTPAAPVGGAMPGQPLTQQIYIPNDMVG 403
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT + Q A +L
Sbjct: 404 AIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYML 454
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 389 QPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQ--EC 446
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 447 N----QMALYMLYSRL 458
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 388 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE----NSNERLVTITGT 443
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 444 QECNQMALYMLYSRL 458
>gi|388503270|gb|AFK39701.1| unknown [Medicago truncatula]
Length = 110
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 10/89 (11%)
Query: 458 GSGSKSAIVTN----------TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP 507
G GS S+ TN +T+E++VP N +G V G+ G+NL +R+ISGA V + E
Sbjct: 19 GYGSMSSYATNLYEGHRLPPLSTLEMVVPANAVGKVMGKGGANLANIRKISGATVEISES 78
Query: 508 RLGSTDRIVVISGTPDETQAAQSLLQAFI 536
+ DR+ +ISGT +E +AA++L+QAFI
Sbjct: 79 KSYRGDRVALISGTSEEKRAAENLIQAFI 107
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+VV +N VG ++GKGG ++ +RK++G ++ I + + DRV ISG
Sbjct: 44 MVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYR----GDRVALISG 91
>gi|410982764|ref|XP_003997718.1| PREDICTED: RNA-binding protein Nova-2 [Felis catus]
Length = 372
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 168/393 (42%), Gaps = 84/393 (21%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+ V +S+ SDR ++ E ++L + G++IGKGG I LQ E GA I +
Sbjct: 23 TCVPDISIASDR------DGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 76
Query: 222 GAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLV 278
+ P ER+ V + +A+ V S + E E + + K +V
Sbjct: 77 SKSKDFYPGTTERVCLVQGTA----------EALNAVHSFIAEKVRE--IPQAMTKPEVV 124
Query: 279 N---------------ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCIS 323
N A+L+V ++ G ++GKGG + + + +G +++ Q + I+
Sbjct: 125 NILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGIN 182
Query: 324 ENDRVVQISGEFSKVKDAVYNVTGRLR-DNHFSGTLNTARTRSTSSVLTETSPYSRLKDP 382
+RVV +SGE +V AV + +++ D S LN + Y+ + P
Sbjct: 183 LQERVVTVSGEPEQVHKAVSAIVQKVQEDPQSSSCLNIS--------------YANVAGP 228
Query: 383 ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGR 442
V +S ++ P D L P A L G + +
Sbjct: 229 ----VANSNPTGSPYASP-----ADVL-----------PAAAAASAAAASGLLGPAGLA- 267
Query: 443 GWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV 502
G+ L SG+ A VEI VPEN++G++ G+ G L+ ++++GA++
Sbjct: 268 ----GVGAFPAALPAFSGTDLA---KELVEIAVPENLVGAILGKGGKTLVEYQELTGARI 320
Query: 503 IVH---EPRLGSTDRIVVISGTPDETQAAQSLL 532
+ E G+ +R V I+G+P TQAAQ L+
Sbjct: 321 QISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 353
>gi|378726019|gb|EHY52478.1| hypothetical protein HMPREF1120_00690 [Exophiala dermatitidis
NIH/UT8656]
Length = 365
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 153/351 (43%), Gaps = 46/351 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 43 QSQLTLRAIVSTKEAGVIIGKAGKNVADLREETGVKAGVSKVVQGVHDRVLTVT---GP- 98
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA LV L+EG + G+ RL+++ NQ+G ++G+ G I
Sbjct: 99 --LSGIAKAYSLVAKGLLEGAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQGLKIKH 156
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ V+G +R+++ + + S +R+V++ G + AV+ + L D+ GT T
Sbjct: 157 IQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIDKAVWEIGKCLVDDWQRGT-GTVL 212
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
V + P PA G L G +++G S +
Sbjct: 213 YNPAVRVQVGSGPLP----PAVGG--------------GLPAGNNYIGGGRSYN------ 248
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+T G S RG+++G +GG+ + + + T I +P +++G
Sbjct: 249 ----RTGNGADFSES----RGYTRGNDLPRGGIPMVTEDGEEVQTQN---ISIPADMVGC 297
Query: 483 VYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G GS + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 298 IIGRGGSKISEIRKTSGARISIAKAPHDDTGERMFTIMGSASANERALYLL 348
>gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens]
Length = 299
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 57/320 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H+ +HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHA----THDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSVYG 485
T TT E+ +P N+IG + G
Sbjct: 277 STQTTHELTIPNNLIGCIIG 296
>gi|169622886|ref|XP_001804851.1| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
gi|160704873|gb|EAT77860.2| hypothetical protein SNOG_14668 [Phaeosphaeria nodorum SN15]
Length = 357
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 160/378 (42%), Gaps = 74/378 (19%)
Query: 169 LESDRVATLDARTQQQ----EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT 224
L D A + RT+Q+ +++ R + S+ + G +IGK G + L+ E G V
Sbjct: 24 LNMDGEADVVPRTEQEYADSQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKV 83
Query: 225 MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGL------DFSSNKGLLV 278
+ +R+++VT S S KA LV L++G G+ D + + L V
Sbjct: 84 VQGVHDRVLSVTGS------LSGISKAYGLVAKGLLDGAPAMGMGGVVRTDGTHQRKLTV 137
Query: 279 NA-RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
A RL+++ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G S
Sbjct: 138 TAIRLLISHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGSPSS 194
Query: 338 VKDAVYNVTGRLRDNH--FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH 395
++ A++ + L D+H GT+ ++ Y+R + A F + + S
Sbjct: 195 IEKAIWEIGKCLIDDHERGYGTVLYNPAGGATAGGMGGRSYNRTGNGADFSDSAPTSYSR 254
Query: 396 DFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGL 455
D S P T H + G+
Sbjct: 255 ----------------RSGSDAASRPPPPT------------------------HDEDGV 274
Query: 456 ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDR 514
EL T I +P +++G + G GS + +R+ SGA++ I P + +R
Sbjct: 275 EL-----------QTQNISIPSDMVGCIIGRGGSKISEIRKTSGARISIAKAPHDDTGER 323
Query: 515 IVVISGTPDETQAAQSLL 532
+ I+G+ + A LL
Sbjct: 324 MFTITGSATANEKALYLL 341
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 14/171 (8%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
+VG++IGK G I+ ++ ++GA I++ C ER++T+T S G KA ++
Sbjct: 1 EVGSIIGKRGDHIKLIRDQSGAKINISDG--SCPERIVTITGSIGT------INKAFGMI 52
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
++L + + L S K + RL+V + Q GC++GKGGT I E+R+ TG SI++ S
Sbjct: 53 CAKLQQ--DLQALPNSIPKPP-ITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQVAS 109
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRST 366
+ L S +R V ISG + D + N+ L + G R + T
Sbjct: 110 EMLP---SSTERAVTISGSADSIVDCMRNICQILLEAPPKGNTLPYRPKPT 157
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-PECDERLITVTAS 238
++ R++ + G +IGKGGT I+ ++ GA I V + M P ER +T++ S
Sbjct: 72 ITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQVASEMLPSSTERAVTISGS 125
>gi|242764737|ref|XP_002340835.1| KH domain RNA binding protein [Talaromyces stipitatus ATCC 10500]
gi|218724031|gb|EED23448.1| KH domain RNA binding protein [Talaromyces stipitatus ATCC 10500]
Length = 461
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 98/427 (22%), Positives = 171/427 (40%), Gaps = 73/427 (17%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ--QQEVSF---RILCSNDKVGAVI 201
+SV+ +SS + ++ + +DRV + + Q Q E S+ R + S+ + I
Sbjct: 60 DSVVNGKDASSANDTQPIQSTASHADRVTSQPPQHQTPQDESSWIHIRAVISSQEAATCI 119
Query: 202 GKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
GKGG + ++ +G+ +V ER++TV+ GP Q AV F +I
Sbjct: 120 GKGGENVSKIRQLSGSKCTVSDYSRGAVERILTVS---GP-------QDAVAKAFGLIIR 169
Query: 262 GTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK 320
+ + L+ S+ + RL++ +G ++GKGG I E+++ +G + SD L
Sbjct: 170 TLNNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKGGVRIREIQEASGARLN-ASDACLP 228
Query: 321 CISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLTETS-- 374
+E R + + G V A Y V L + F G +A TRS
Sbjct: 229 LSTE--RSLVVLGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRSGGPAGVVPGGM 286
Query: 375 ------------------------PYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMD 407
P + P +G H A +QPPL G
Sbjct: 287 QVVPYVPQPAGGQYGHPDSVRRHYPQNNRPGPGPYGAPYAHGGPAAQAPVAQPPLHYGGG 346
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
++ P P + G H G L S +T
Sbjct: 347 AARAPYAGAGPHQPAPY------------------GAPHAQPHGAGAQPLAGVVSSQPIT 388
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
+I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT + Q
Sbjct: 389 Q---QIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQM 445
Query: 528 AQSLLQA 534
A +L A
Sbjct: 446 ALYMLYA 452
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGGT I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 385 QPITQQIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQ--EC 442
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ ++++RL
Sbjct: 443 N----QMALYMLYARL 454
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
+ ++ + ++ VG ++GKGGT I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 387 ITQQIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQE----NSNERLVTITGTQEC 442
Query: 338 VKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 443 NQMALYMLYARL 454
>gi|113931242|ref|NP_001039068.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89273953|emb|CAJ81328.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
Length = 362
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 115/273 (42%), Gaps = 57/273 (20%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLVV ++Q G L+GKGG+ I E+R+ TG +++ D L + +R V ISG
Sbjct: 12 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLP---NSTERAVTISGTPDA 68
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTRSTS-------------SVLTETSPYSRLKDP-- 382
+ V + + ++ G R + S ++L ++ L P
Sbjct: 69 IIQCVKQICVVMLESPPKGATIPYRPKPASGPIIFAGGQVRAETILASAGNHTVLAQPQP 128
Query: 383 -ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG 441
+F + A+ H P LT+ + L + H +P QT G
Sbjct: 129 APAFAIQGQYAIPH----PDLTK-LHQLAMQH------TPFTPLGQTTPGFP-------- 169
Query: 442 RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK 501
GL+ S + S E+ +P ++IG + G GS + +RQ+SGA+
Sbjct: 170 ------------GLDATSPTSSH-------ELTIPNDLIGCIIGRQGSKINEIRQMSGAQ 210
Query: 502 VIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ + G+ +R V I+G+P AQ L+ A
Sbjct: 211 IKIANASEGNGERQVTITGSPANISLAQYLINA 243
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS 238
T + V+ R++ + G++IGKGG+ I+ ++ GA + V G +P ER +T++ +
Sbjct: 7 TSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 65
>gi|212723546|ref|NP_001131366.1| uncharacterized protein LOC100192689 [Zea mays]
gi|194691330|gb|ACF79749.1| unknown [Zea mays]
gi|413935393|gb|AFW69944.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 467
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD---ERLITVTASEGPESR 244
FR++ DKVG +IG+ G I+ L E A + V P D R++ V+A E E+
Sbjct: 100 FRLVVPADKVGGIIGRRGDTIKRLCDETRARVRV-LDAPHGDGAFSRIVLVSAREEVEAE 158
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGCLLGKGGT 298
SPA A + +F + E D +S+ L+ A RL+V Q ++GK G
Sbjct: 159 LSPAMNAAIKIFKHINEIE-----DINSDGTLMAPAPEISSVRLLVPFAQALHVIGKQGV 213
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
I +++ TG+++RI+ D+LL + +R+V+I+G +V +A+ V G LR
Sbjct: 214 TIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLR 266
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRI-VVISGTP 522
+++T T + +P +G + G G N+ +R +SGA V++ ++G+ + V+I GTP
Sbjct: 321 SLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGAVVVLE--KIGNGQEVRVMIEGTP 378
Query: 523 DETQAAQSLLQ 533
+ Q A L+Q
Sbjct: 379 SQVQTAHQLVQ 389
>gi|194387672|dbj|BAG61249.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 83/322 (25%), Positives = 139/322 (43%), Gaps = 54/322 (16%)
Query: 211 LQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
++ E+GA I++ C ER+IT+ GP + KA ++ +L E S +
Sbjct: 1 MREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMIIDKLEEDISSSMTNS 52
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
++ V RLVV ++Q G L+GKGG I E+R+ TG +++ D L + +R +
Sbjct: 53 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAIT 109
Query: 331 ISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSS 390
I+G + + V + + + T S S T PY P+S V +
Sbjct: 110 IAGIPQSIIECVKQICVVMLE-----------TLSQSPPKGVTIPYR--PKPSSSPVIFA 156
Query: 391 VAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH 450
Q + Q H ++H +G+ S +V W
Sbjct: 157 GGQLTKLHQLAMQQ--SHFPMTHG-----------NTGFSGIE-SSSPEVKGYW------ 196
Query: 451 HKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG 510
GL+ A T+ E+ +P ++IG + G G+ + +RQ+SGA++ + P G
Sbjct: 197 ---GLD-------ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 246
Query: 511 STDRIVVISGTPDETQAAQSLL 532
STDR V I+G+ AQ L+
Sbjct: 247 STDRQVTITGSAASISLAQYLI 268
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 106/252 (42%), Gaps = 59/252 (23%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 25 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 84
Query: 211 LQSEAGAFISV-GATMPECDERLITV--------------------TASEGPES------ 243
++ GA + V G +P ER IT+ T S+ P
Sbjct: 85 IRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTIPY 144
Query: 244 RYSPAQKAVVLVFSRLIE----------------GTSEKGLDFSSNK-----GLLVNAR- 281
R P+ V+ +L + T G++ SS + GL +A+
Sbjct: 145 RPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQT 204
Query: 282 ----LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
L + ++ +GC++G+ G I+E+R+++G I+I + DR V I+G +
Sbjct: 205 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQVTITGSAAS 260
Query: 338 VKDAVYNVTGRL 349
+ A Y + RL
Sbjct: 261 ISLAQYLINVRL 272
>gi|413935391|gb|AFW69942.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 468
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD---ERLITVTASEGPESR 244
FR++ DKVG +IG+ G I+ L E A + V P D R++ V+A E E+
Sbjct: 100 FRLVVPADKVGGIIGRRGDTIKRLCDETRARVRV-LDAPHGDGAFSRIVLVSAREEVEAE 158
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGCLLGKGGT 298
SPA A + +F + E D +S+ L+ A RL+V Q ++GK G
Sbjct: 159 LSPAMNAAIKIFKHINEIE-----DINSDGTLMAPAPEISSVRLLVPFAQALHVIGKQGV 213
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
I +++ TG+++RI+ D+LL + +R+V+I+G +V +A+ V G LR
Sbjct: 214 TIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLR 266
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRI-VVISGTP 522
+++T T + +P +G + G G N+ +R +SGA V++ ++G+ + V+I GTP
Sbjct: 322 SLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGAVVVLE--KIGNGQEVRVMIEGTP 379
Query: 523 DETQAAQSLLQ 533
+ Q A L+Q
Sbjct: 380 SQVQTAHQLVQ 390
>gi|346971553|gb|EGY15005.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 514
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 161/361 (44%), Gaps = 57/361 (15%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T G E
Sbjct: 44 QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG--GCE 101
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+ +A +V L+EG G+ +L+++ NQ+G ++G+ G I
Sbjct: 102 A----ISRAYAIVAQALLEGAPSLGMGGVPQSNGTHPIKLLISHNQMGTIIGRQGLKIKH 157
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ V+G +R+++ + + S +R+V++ G ++ A++ ++ L D+
Sbjct: 158 IQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPDGIRAAIWEISKCLVDDW--------- 205
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
R T +VL +P R + P S + S+ P T G G S SSP+
Sbjct: 206 QRGTGTVL--YNPVVRTQ-PGSTPAVGGTSPSY-----PSTGG----GRSQEY---SSPR 250
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQ----------GLSHHKGGLELGSGSKSAIVTNTTVE 472
+ +T G + R +S+ +H + G EL T
Sbjct: 251 VL--RTGNGADFSSNGGGQRPYSRRSDSDAASRGPPTHDENGEEL-----------QTQN 297
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSL 531
I +P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A L
Sbjct: 298 ISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTSKANESALFL 357
Query: 532 L 532
L
Sbjct: 358 L 358
>gi|397493518|ref|XP_003817651.1| PREDICTED: RNA-binding protein Nova-2 [Pan paniscus]
Length = 349
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 158/376 (42%), Gaps = 72/376 (19%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
++ E ++L + G++IGKGG I LQ E GA I + + P ER+ V +
Sbjct: 2 EEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGT 61
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN---------------ARLV 283
+A+ V S + E E + + K +VN A+L+
Sbjct: 62 A----------EALNAVHSFIAEKVRE--IPQAMTKPEVVNILQPQTTMNPDRAKQAKLI 109
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
V ++ G ++GKGG + + + +G +++ Q + I+ +RVV +SGE +V AV
Sbjct: 110 VPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGEPEQVHKAVS 167
Query: 344 NVTGRLR-DNHFSGTLNTARTRSTSSVLTET---SPYSRLKDPASFGVHSSVAVSHDFSQ 399
+ +++ D S LN + V SPY+ D +S A +
Sbjct: 168 AIVQKVQEDPQSSSCLNISYANVAGPVANSNPTGSPYASPADVLPAAAAASAAAASGLLG 227
Query: 400 PPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGS 459
P G+ ++ TA+ +L +
Sbjct: 228 PAGLAGVGAFPAXXXXXAGAAGGFLTAE----------------------------KLAA 259
Query: 460 GSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH---EPRLGSTDRIV 516
S +V EI VPEN++G++ G+ G L+ ++++GA++ + E G+ +R V
Sbjct: 260 ESAKELV-----EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRV 314
Query: 517 VISGTPDETQAAQSLL 532
I+G+P TQAAQ L+
Sbjct: 315 TITGSPAATQAAQYLI 330
>gi|367043886|ref|XP_003652323.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
gi|346999585|gb|AEO65987.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
Length = 482
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 149/354 (42%), Gaps = 34/354 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 123 IHIRAVISSPEAATVIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSG-------- 174
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNK-GLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L+ SN+ RL++ +G ++GKGG I E++
Sbjct: 175 --IVDAVAKAFGLIIRTLNNEPLNEPSNQHSKTYPLRLLIPHILIGSIIGKGGARIKEIQ 232
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 233 EASGARLNA-SDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASA 289
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHD----FSQPPLTQGMDHLGL 411
TRS T + PY+ ++G + + PP + +
Sbjct: 290 YATRSGGPAGTVPGGMQVVPYNPQPAGGNYGNRDNYYRGRQDPRAYHMPPQSYAPPYGHP 349
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG----LELGSGSKSAIVT 467
++ P+ P + A G V G H G + G+G A +T
Sbjct: 350 HPAIPNPAVPMPYGAHAAGGYGAGPHVPVHHAGPAGPHGHAGPHGQPMPGGAGMPGAPLT 409
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
+I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT
Sbjct: 410 Q---QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGT 460
>gi|432857879|ref|XP_004068771.1| PREDICTED: poly(rC)-binding protein 4-like [Oryzias latipes]
Length = 453
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 30/265 (11%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLV+ ++Q G L+GKGG+ I E+R+ TG +++ D L + +R V ISG
Sbjct: 83 VTLRLVIPASQCGSLIGKGGSKIKEIRETTGAQVQVAGDLL---PNSTEREVTISGGQDA 139
Query: 338 VKDAVYNVTGRLRDNHFSGTLNTARTRST-SSVLTETSPYSRLKDPASFGVHSSVAVSHD 396
+ V + + ++ G R T SVL + D S + S V D
Sbjct: 140 IIQCVKLICTVILESPPKGATIPYRPSPTPGSVLLGGTQVFEASDFGSHPLFSMVQGGVD 199
Query: 397 FSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
Q Q H GL HS Q ++ H+ +S +E
Sbjct: 200 LQQTYAVQ--SHYGLHHSELAKLHQLSIQQQALSAAHVLPAS----------------ME 241
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
S T+ E I+P ++IGS+ G GS + +RQ+SGA++ + ++DR V
Sbjct: 242 SNS--------QTSQEFIIPNDLIGSIIGRQGSKINEIRQVSGAQIKIGSQIDSTSDRHV 293
Query: 517 VISGTPDETQAAQSLLQAFILTGPS 541
I+GTP AQ L+ + + T S
Sbjct: 294 TITGTPIAINLAQYLITSCLETAKS 318
>gi|195606546|gb|ACG25103.1| hypothetical protein [Zea mays]
Length = 100
Score = 72.8 bits (177), Expect = 5e-10, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T E+I+P N IG V G NGS + + ++SGA + VH+P+ G + VVI G P+ET+ AQ
Sbjct: 27 TTEVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVHDPKAGDANSKVVICGDPEETKKAQ 86
Query: 530 SLLQAFILTG 539
SL+ AFI G
Sbjct: 87 SLIHAFIFCG 96
>gi|413935392|gb|AFW69943.1| hypothetical protein ZEAMMB73_108333 [Zea mays]
Length = 397
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD---ERLITVTASEGPESR 244
FR++ DKVG +IG+ G I+ L E A + V P D R++ V+A E E+
Sbjct: 100 FRLVVPADKVGGIIGRRGDTIKRLCDETRARVRV-LDAPHGDGAFSRIVLVSAREEVEAE 158
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGCLLGKGGT 298
SPA A + +F + E D +S+ L+ A RL+V Q ++GK G
Sbjct: 159 LSPAMNAAIKIFKHINEIE-----DINSDGTLMAPAPEISSVRLLVPFAQALHVIGKQGV 213
Query: 299 IISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
I +++ TG+++RI+ D+LL + +R+V+I+G +V +A+ V G LR
Sbjct: 214 TIKSIQESTGSTVRIMDEDELLSHETMGERIVEINGASLEVLNALKLVLGLLR 266
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRI-VVISGTP 522
+++T T + +P +G + G G N+ +R +SGA V++ ++G+ + V+I GTP
Sbjct: 322 SLITKITRTMQIPLADVGEIIGVRGENVELIRSVSGAVVVLE--KIGNGQEVRVMIEGTP 379
Query: 523 DETQAAQSLLQAFI 536
+ Q A L+Q +
Sbjct: 380 SQVQTAHQLVQVLV 393
>gi|403260495|ref|XP_003922705.1| PREDICTED: poly(rC)-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 302
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 136/318 (42%), Gaps = 57/318 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G V + V + + + TL+ +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLE-----TLSQSPQGR 177
Query: 366 TSSVLTETSPYS----------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
++ + P S R D A + H+ +HD PPL
Sbjct: 178 VMTIPYQPMPASSPVICAGGQDRCSDAAGY-PHA----THDLEGPPL------------- 219
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV--------- 466
+ + T++ + L + V R S H G G S S V
Sbjct: 220 ---DAYSIQGQHTISPLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDA 276
Query: 467 -TNTTVEIIVPENVIGSV 483
T TT E+ +P N+IG +
Sbjct: 277 STQTTHELTIPNNLIGCL 294
>gi|383849051|ref|XP_003700160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Megachile rotundata]
Length = 460
Score = 72.0 bits (175), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R +Q + R+L + G++IGKGG I L+S+ A I V P+C ER++T++
Sbjct: 41 RYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV----PDCPGPERVLTIS- 95
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
S+ P V+ V + ++ E G S++ ++ R++V +Q GC++GKGG
Sbjct: 96 SDLP---------TVLQVLNEVVPNLEENGSRHGSDE---IDVRMLVHQSQAGCIIGKGG 143
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I E+R+ TG I+I S C DR++ I G+ S D + + ++ + G
Sbjct: 144 LKIKELREKTGARIKIYSHC---CPHSTDRLISICGKPSTCIDCIRELIATIKTSPLKGM 200
Query: 358 LN 359
N
Sbjct: 201 NN 202
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 460 GSKSAIVTN-TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
G++ + +N T+ ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I
Sbjct: 376 GNQGNMGSNKTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITI 435
Query: 519 SGTPDETQAAQSLLQ 533
+G P + Q AQ LLQ
Sbjct: 436 TGLPSQIQMAQYLLQ 450
Score = 45.4 bits (106), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
+ S ++ D GA+IGKGG IR ++S++GA I++ +P ++R+IT+T
Sbjct: 384 NKTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITG 437
>gi|195658007|gb|ACG48471.1| hypothetical protein [Zea mays]
Length = 157
Score = 71.6 bits (174), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/70 (48%), Positives = 47/70 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T E+I+P N IG V G NGS + + ++SGA + VH+P+ G + VVI G P+ET+ AQ
Sbjct: 84 TTEVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVHDPKAGDANSKVVICGDPEETKKAQ 143
Query: 530 SLLQAFILTG 539
SL+ AFI G
Sbjct: 144 SLIHAFIFCG 153
>gi|66472276|ref|NP_001018567.1| poly(rC) binding protein 3 [Danio rerio]
gi|63101380|gb|AAH95089.1| Poly(rC) binding protein 3 [Danio rerio]
gi|182890686|gb|AAI65090.1| Pcbp3 protein [Danio rerio]
Length = 241
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 69 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 123
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
EMR+ TG +++ D L + +R V ISG
Sbjct: 124 EMRESTGAQVQVAGDMLP---NSTERAVTISG 152
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT--PEA 156
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTP+
Sbjct: 101 TLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPE 155
>gi|70989127|ref|XP_749413.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|66847044|gb|EAL87375.1| KH domain RNA-binding protein [Aspergillus fumigatus Af293]
gi|159128828|gb|EDP53942.1| KH domain RNA-binding protein [Aspergillus fumigatus A1163]
Length = 355
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 148/351 (42%), Gaps = 48/351 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 35 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 90
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+A LV L+EG + G+ N RL+++ NQ+G ++G+ G I
Sbjct: 91 --LQGTARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKH 148
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 149 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDW--------- 196
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
R T ++L +P R S +++S +V + +S P
Sbjct: 197 QRGTGTIL--YNPAVRASVGGSTSMNTS-SVGNGYSSRPYN------------------- 234
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+T G G G G L + I T I +P +++G
Sbjct: 235 ----RTGNGADFSDGQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQN---ISIPADMVGC 287
Query: 483 VYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G GS + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 288 IIGRGGSKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLL 338
>gi|345564609|gb|EGX47569.1| hypothetical protein AOL_s00083g77 [Arthrobotrys oligospora ATCC
24927]
Length = 459
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 160/365 (43%), Gaps = 37/365 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R L ++ + VIGKGG + ++ + A +V ER++TV+
Sbjct: 103 IHVRALITSAEAATVIGKGGENVTQIRRLSEAKCTVSEYTRGAVERILTVSG-------- 154
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L +S + RL++ +G ++GKGG I E++
Sbjct: 155 --GVDAVAKAFGLIIRTINSEPLSSASTQNSKTFPLRLLIPHILIGSIIGKGGMRIREIQ 212
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+G + SD L +E R + + G V A Y V L + F G +A
Sbjct: 213 DASGARLNA-SDSCLPLSTE--RSLMVVGVADAVHIATYYVATTLVEQLTERFGGPAASA 269
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQ--PPLTQGMDHLGLSH 413
+RS + PY+ ++G + ++ +Q P G+ +L
Sbjct: 270 YASRSGGPAGAVPGGMQVVPYTPQPAFGNYGHPDNYRRHNNQAQRTPANPYGIPYLHGQP 329
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHH---KGGLELGSGSKSAIVTNT 469
+ P++P + + + G G Q + HH G G G+ +A++
Sbjct: 330 PVQQPAAPIHYADPSAQPAY------SGAGPHQPTVPHHGAHTGPAAQGHGNMAAMIPGA 383
Query: 470 --TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I+GT + Q
Sbjct: 384 PLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQM 443
Query: 528 AQSLL 532
A +L
Sbjct: 444 ALYML 448
Score = 46.6 bits (109), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 388 QIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQ--ECN---- 441
Query: 249 QKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 442 QMALYMLYSRL 452
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 382 GAPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNSNERLVTITGT 437
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 438 QECNQMALYMLYSRL 452
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 21/151 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPE 242
+V RIL + GA+IGKGG I L+++ A ++V P+C ER++TVT ++
Sbjct: 47 KVDLRILLQSKNAGAIIGKGGNNIHRLRTQYNATVTV----PDCSGPERILTVTTNQ--- 99
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
A ++ V L E K LDF R++V +Q G ++G+ G I E
Sbjct: 100 ---ETALSCLLDVIPVLEEYQQYKDLDFD------CEMRMLVHQSQAGAIIGRAGFKIKE 150
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+R+ TG +I++ S+ C + +RVVQ++G
Sbjct: 151 LREQTGANIKVYSE---VCPNSTERVVQMNG 178
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 46/65 (70%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ GS+ G+ GS + ++R+ SGA + + EP GS DRI+ I GTP++ Q A
Sbjct: 355 TTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITIKGTPEQIQNA 414
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 415 QYLLQ 419
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
+ G+D N ++ + + G ++GKGG+ I ++R+ +G I+I D+ L
Sbjct: 342 DSGMDQQYNTSQFTTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKI--DEPLP--GS 397
Query: 325 NDRVVQISGEFSKVKDAVYNVTGRLR 350
NDR++ I G ++++A Y + R+R
Sbjct: 398 NDRIITIKGTPEQIQNAQYLLQNRVR 423
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL 254
D G++IGKGG+ I ++ ++GA I + +P ++R+IT+ + PE Q A L
Sbjct: 364 DLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITIKGT--PEQ----IQNAQYL 417
Query: 255 VFSRL 259
+ +R+
Sbjct: 418 LQNRV 422
>gi|340914749|gb|EGS18090.1| putative pab1-binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 484
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 88/368 (23%), Positives = 154/368 (41%), Gaps = 40/368 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 125 IHIRAVISSPEAATIIGKGGENVTKIRQMSGARCTVSDYQKGAVERILTVSG-------- 176
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNK-GLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L+ SN+ RL++ +G ++GKGG I E++
Sbjct: 177 --IVDAVAKAFGLIIRTLNNEPLNEPSNQHSKTYPLRLLIPHVLIGSIIGKGGARIKEIQ 234
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 235 EASGARLN-ASDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGAAASA 291
Query: 362 R-TRSTSSVLTETS-----PYSRLKDPASFGVHSSV------AVSHDFSQPPLTQGMDHL 409
TRS V PY+ +G + +H PP Q H
Sbjct: 292 YATRSGGPVGAVPGGMQVIPYNPQPAGGHYGNRDAYYRARPDPRAHHMPPPPYAQPYGH- 350
Query: 410 GLSHSLDCPSS-PKLWTAQTVTGV----HLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
+H + ++ P + A G H++ VG + G G+
Sbjct: 351 -PAHPVHPAAAMPMHYGATPAAGYGPAPHVQ-PPHVGHPAAHPHVGPHGQPVAGAHMPGQ 408
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT +
Sbjct: 409 TITQ---QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEEC 465
Query: 525 TQAAQSLL 532
+ A +L
Sbjct: 466 NRMALYML 473
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 408 QTITQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--EC 465
Query: 244 RYSPAQKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 466 N----RMALYMLYSRL 477
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 407 GQTITQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGT 462
Query: 335 FSKVKDAVYNVTGRLRD 351
+ A+Y + RL +
Sbjct: 463 EECNRMALYMLYSRLEN 479
>gi|348578485|ref|XP_003475013.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Cavia
porcellus]
Length = 338
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 164/387 (42%), Gaps = 74/387 (19%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + ++I T E+GL
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD----------IETIGEILKKIIP-TLEEGLQL 114
Query: 271 SSNKGLLVNARLVVASNQVGCL---LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDR 327
S ++L + S+ V CL KG E+R LL S
Sbjct: 115 PSP---TATSQLPLESDAVECLNYQHYKGSDFDCELR-------------LLIHQSLAGG 158
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGV 387
++ + G +K+K+ LR+ H + S Y +D ++
Sbjct: 159 IIGVKG--AKIKE--------LREIHIG---------VCECMNCNYSKYCTFRDLMAYDR 199
Query: 388 HSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWT-AQTVTGVHLRGSSDVGRGWSQ 446
+D GM +G S S+ W+ ++ +G S ++
Sbjct: 200 RGRPGDRYD--------GM--VGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDYSYAG 249
Query: 447 GLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE 506
G + +LG I+T ++ +P+++ GS+ G+ G + ++R SGA + + E
Sbjct: 250 GRGSYG---DLG----GPIIT---TQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDE 299
Query: 507 PRLGSTDRIVVISGTPDETQAAQSLLQ 533
P GS DRI+ I+GT D+ Q AQ LLQ
Sbjct: 300 PLEGSEDRIITITGTQDQIQNAQYLLQ 326
>gi|380478963|emb|CCF43298.1| KH domain-containing protein [Colletotrichum higginsianum]
Length = 469
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 150/367 (40%), Gaps = 39/367 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 111 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGV------V 164
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A KA L+ L +E + SS + RL++ +G ++GKGG I E+++
Sbjct: 165 DAAAKAFGLIIRTL---NNEPLAEPSSAQSKTYPLRLLIPHILIGSIIGKGGARIREIQE 221
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL---RDNHFSGTLNTAR 362
+G + SD L +E VV G V A Y V L ++ F G +A
Sbjct: 222 ASGARLN-ASDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNDRFGGPAASAY 278
Query: 363 -TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL- 415
TRS + PYS ++G + HD H GL +
Sbjct: 279 ATRSGGPAGVVPGGMQVVPYSPQPTTGNYGNRENYNRRHDAR-------AQHHGLPAAPY 331
Query: 416 -DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG-------GLELGSGSKSAIVT 467
P P +H + G G + + H G G V
Sbjct: 332 GAQPYPPHAAQPNPAMPIHYGAAQAGGYGAAAPMQPHAGAAVPQPHGAHPAQPIHGGAVA 391
Query: 468 NT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT +
Sbjct: 392 GAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECN 451
Query: 526 QAAQSLL 532
+ A +L
Sbjct: 452 RMALYML 458
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 398 QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--ECN---- 451
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 452 RMALYMLYSRL 462
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 392 GAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGT 447
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 448 EECNRMALYMLYSRL 462
>gi|320588068|gb|EFX00543.1| kh domain protein RNA-binding protein [Grosmannia clavigera kw1407]
Length = 375
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 159/368 (43%), Gaps = 40/368 (10%)
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP 226
L + + + D Q +++ R + S+ + G +IGKGG + L+ E G V +
Sbjct: 28 LGPDGEIIPKTDEEYAQTQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQ 87
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
+R++T+T KA +V L+EG G+ +L+++
Sbjct: 88 GVHDRVLTITGG------CDAISKAYAVVARALLEGVPTMGMGGILQGNGTHPIKLLISH 141
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
NQ+G ++G+GG I ++ V+G +R+++ + + S +R+V++ G ++ AV+ +
Sbjct: 142 NQMGTVIGRGGLKIKHIQDVSG--VRMVAQKDILPQS-TERIVEVQGTPEGIQKAVWEIC 198
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
L D+ R T +VL +P R + + S+A + +++ + G
Sbjct: 199 KCLVDDW---------QRGTGTVL--YNPVVRTQGTSPTLGSGSIAPTSNYN----SGGR 243
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSD-VGRGWSQGLSHHKGGLELGSGSKSAI 465
G S + + + R SD RG +H + G E+
Sbjct: 244 SEYGNSRVTRTGNGADFSNGASSRPNNRRSDSDAAARGPP---THDEQGNEI-------- 292
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDE 524
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+
Sbjct: 293 ---QTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKA 349
Query: 525 TQAAQSLL 532
+ A LL
Sbjct: 350 NETALFLL 357
>gi|297810533|ref|XP_002873150.1| hypothetical protein ARALYDRAFT_487225 [Arabidopsis lyrata subsp.
lyrata]
gi|297318987|gb|EFH49409.1| hypothetical protein ARALYDRAFT_487225 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 154/365 (42%), Gaps = 78/365 (21%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLIT 234
+A + ++ R L SN G+VIGKGG+ I Q+++GA I + P +R+I
Sbjct: 27 EADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIM 86
Query: 235 VTASEGPESRYSPAQKAVVLVFSRL-IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
++ S + L+ +L E +E G + + + RLVV ++ G ++
Sbjct: 87 ISGS------IKEVINGLELILDKLHSELHAEDGNEVEPRRRI----RLVVPNSSCGGII 136
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RD 351
GKGG I + + I+I D +S DR+V +SG F + A+ + +L D
Sbjct: 137 GKGGATIKSFIEESKAGIKISPLDNTFYGLS--DRLVTLSGTFEEQMRAIDLILAKLTED 194
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL 411
+H+S ++ SPYS G+ S F PP +
Sbjct: 195 DHYSQNVH--------------SPYSYA------GLFYS-----GFHGPPYAYAL----- 224
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
P + TA G + + G G +HK +TTV
Sbjct: 225 ---------PSVATA----GYNSVNYAPNGSGGK--YQNHKD------------EASTTV 257
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDETQAA 528
I V + IG V G G N++ + QI+GA++ + + G+TDR V I+G Q A
Sbjct: 258 TIGVADEHIGLVLGRGGRNIMEITQITGARIKISDRGDFMSGTTDRKVSITGPQRAIQQA 317
Query: 529 QSLLQ 533
+++++
Sbjct: 318 ETMIK 322
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPE 242
+ R+L + G++IGKGG+ I L++E A I +P+C ER++T+ +
Sbjct: 32 DTELRLLVYSKVAGSIIGKGGSNISKLRTENHATI----LLPDCPGPERILTIQGN---- 83
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--VNARLVVASNQVGCLLGKGGTII 300
AV+ V ++ E G + +ARL+V +Q+GC++G+GG +
Sbjct: 84 ------LDAVINVLQNVLPSLEEVSKIRGERTGRVGDSDARLLVHQSQIGCIIGRGGAKV 137
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
E+R+ TGT I + S + C DR+VQI G+ S + + + ++++ G ++
Sbjct: 138 KELRESTGTRITVYS---VCCPRSTDRIVQILGKPSDCGECIKQIIALVKESQVKGPID 193
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 44/64 (68%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ G++ G+ G+ + ++R SGA + + EPR GST+RI+ ISG+ + AQ
Sbjct: 308 TTQVSIPKDLAGAIIGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGSSHQIWKAQ 367
Query: 530 SLLQ 533
LLQ
Sbjct: 368 YLLQ 371
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 194 NDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
D GA+IGKGG IR ++ ++GA I++ P ER+IT++ S
Sbjct: 315 KDLAGAIIGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGS 359
>gi|334188353|ref|NP_001190526.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332008916|gb|AED96299.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 198
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 16/123 (13%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS--EGPESR 244
++RILC + K G VIGK GTII++++ GA+I+V +P ER+I ++ + P+ R
Sbjct: 69 TYRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGR 128
Query: 245 ---YSPAQKAVVLVFSRLIEGTSEKGL---------DF--SSNKGLLVNARLVVASNQVG 290
+SPAQ+A+ V R++E ++ G D+ G V RLVV+ VG
Sbjct: 129 MPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVG 188
Query: 291 CLL 293
CLL
Sbjct: 189 CLL 191
>gi|27503479|gb|AAH42440.1| Pcbp3 protein [Mus musculus]
Length = 249
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 19/187 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 67 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 121
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L + +R V ISG + V + + ++ G
Sbjct: 122 EIRESTGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 178
Query: 362 RTRSTSS 368
R + S+
Sbjct: 179 RPKPAST 185
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 11/160 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDTI 70
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + + V RLVV ++Q G L+GKGG+ I EMR+
Sbjct: 71 F---KAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRE 127
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R V ISG + V +
Sbjct: 128 STGAQVQVAGDMLP---NSTERAVTISGTPEAIIQCVKQI 164
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP A
Sbjct: 266 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISLA 325
Query: 529 QSLLQA 534
Q L+ A
Sbjct: 326 QYLINA 331
Score = 42.0 bits (97), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 61 VTITGPTDTIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 120
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTASEGPES 243
I+ ++ GA + V G +P ER +T++ + PE+
Sbjct: 121 KIKEMRESTGAQVQVAGDMLPNSTERAVTISGT--PEA 156
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTP+
Sbjct: 101 TLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTISGTPE 155
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L + ++ +GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A
Sbjct: 270 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQITITGTPANISLA 325
Query: 342 VYNVTGRL 349
Y + RL
Sbjct: 326 QYLINARL 333
>gi|302916853|ref|XP_003052237.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733176|gb|EEU46524.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 373
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 155/360 (43%), Gaps = 49/360 (13%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 40 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 99
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 100 GCDAISR------AYAIVARALLEGAPAMGMGGIVQSNGTHPIKLLISHNQMGTIIGRQG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 154 LKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAVWEICKCLVDDW---- 206
Query: 358 LNTARTRSTSSVL----TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
R T +VL T P S + +S + ++ P + + + S+
Sbjct: 207 -----QRGTGTVLYNPVVRTQPASSTSVGSGGAGYSQGSGRSEYGSPRVMRTGNGADFSN 261
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S + + ++ + +RG +H + G E+ T I
Sbjct: 262 -----GSSRPYNRRSDSDAAIRGPP----------THDENGEEI-----------QTQNI 295
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 296 SIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 355
>gi|242093092|ref|XP_002437036.1| hypothetical protein SORBIDRAFT_10g019330 [Sorghum bicolor]
gi|241915259|gb|EER88403.1| hypothetical protein SORBIDRAFT_10g019330 [Sorghum bicolor]
Length = 319
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 94/184 (51%), Gaps = 25/184 (13%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT-----ASEGP 241
SFRILC K G + ++ E+GAF++V R+I ++G
Sbjct: 90 SFRILCPECKA---YGFPPGFVAKVRDESGAFVTVHPPFAGDYVRIIETVDGARREADGR 146
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSE----------KGLDFSSNKGLLVNARLVVASNQVGC 291
+SPAQ+A+++V R++E ++ +G D ++G RL+V VGC
Sbjct: 147 PPMFSPAQEALLMVHRRILETDADDGDEDGEYGPRGKD-PRDRGK-TTTRLIVPKLHVGC 204
Query: 292 LLGKGGTIISEMRKVTGTSIRII-SDQLL-KCISENDRVVQISGEFSKVKD--AVYNVTG 347
LLGKGG II +MR T T IRI+ DQ +C+S ++ VVQ S EF + + V+N
Sbjct: 205 LLGKGGKIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQ-SLEFLRKMNIWVVFNRCL 263
Query: 348 RLRD 351
+R+
Sbjct: 264 HMRN 267
>gi|224113143|ref|XP_002316405.1| predicted protein [Populus trichocarpa]
gi|222865445|gb|EEF02576.1| predicted protein [Populus trichocarpa]
Length = 334
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 74/351 (21%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
R L SN G+VIGKGG I QS++GA I + P +R+I V+
Sbjct: 38 RFLVSNAAAGSVIGKGGATITDFQSQSGARIQLSRNYEFFPGTSDRIIMVSGG------I 91
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KAV L+ ++L+ + D + + + RLVV ++ G ++GKGG+II +
Sbjct: 92 DDVLKAVELIIAKLLSEIPAEDGDEAEPR---MRVRLVVPNSACGSIIGKGGSIIKSFIE 148
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-HFSGTLNTARTR 364
+ I+ IS K DR+V ++G + A+ + +L D+ H+S T++
Sbjct: 149 ESHAGIK-ISPLDTKFFGLTDRLVTVTGTLEEQMHAIDLILSKLTDDPHYSQTMH----- 202
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+P+S ++ V S G D G+ ++ P
Sbjct: 203 ---------APFS----------YAGVFFS----------GFD--GIQYACVLPY----- 226
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
V ++H G + +TN +V I V + IG V
Sbjct: 227 ---------------VATAAYNSMNHGPNGAAVKFQHNKDDITN-SVTIGVADEHIGLVV 270
Query: 485 GENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDETQAAQSLL 532
G G N++ + Q SGA++ + + G+TDR + I+G+ +AA+ ++
Sbjct: 271 GRGGRNIMEISQTSGARLKISDRGDFMSGTTDRKITITGSQRAIRAAEDMI 321
>gi|414870924|tpg|DAA49481.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 169
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 80 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 139
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 140 QSLLQGFI 147
>gi|414870925|tpg|DAA49482.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 170
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E+ +P + +GS+ G G NL +RQ+SGA++ +HE GS++ +V I GT D+ +AA
Sbjct: 81 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 140
Query: 529 QSLLQAFI 536
QSLLQ FI
Sbjct: 141 QSLLQGFI 148
>gi|417409319|gb|JAA51170.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 283
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 77
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 78 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R + I+G V + V +
Sbjct: 135 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQI 171
>gi|328712758|ref|XP_003244898.1| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 436
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 55/359 (15%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGA--FISVGATMPECDERLITVTASEGPE 242
+ + RIL ++ +VG VIG G ++ ++S++GA IS G+T ER++ ++ +
Sbjct: 27 DFTIRILLNSREVGNVIGIRGETVKNIRSQSGARVLISNGST----PERIVIISGNTIAI 82
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
R + V FS + G ++ K L +L+V ++Q G ++GK G+ I E
Sbjct: 83 CRATELIGLKVEEFSERLNG------NWIGPKTPLT-LKLIVPASQCGFIIGKNGSKIRE 135
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+R + +I + S+ L + +R+V I+G + VY V L D+
Sbjct: 136 IRDSSRAAILVGSNMLP---NSTERLVSITGTTGTISHCVYLVCNVLLDSPPPNC----- 187
Query: 363 TRSTSSVLTETSPYSRLKDPASF---GVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPS 419
E+ Y K+ + F V + H+ PLT + LG + +
Sbjct: 188 ---------ESIAYHPCKEISVFETCTVIKDLGTEHNI---PLTN-LAALGSGTATNGGI 234
Query: 420 SPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENV 479
+P TA + G LR S+ L+++ G + S S I T T I VP+++
Sbjct: 235 NPAALTA--LAGSQLRASNR--------LNNNVSGQQYDKNSNSDIDTTT---ISVPDDL 281
Query: 480 IGSVYGENGSNLLRLRQISGAKVIVHEPR-----LGSTDRIVVISGTPDETQAAQSLLQ 533
IG + G GS + ++RQISGA V + + DR + I+G + A+ L++
Sbjct: 282 IGCIIGRRGSKIAKIRQISGATVHIFRSQGTIENREKVDRRITITGNKESVSVAKYLIE 340
>gi|189188542|ref|XP_001930610.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187972216|gb|EDU39715.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 364
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 163/370 (44%), Gaps = 51/370 (13%)
Query: 169 LESDRVATLDARTQQQ----EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT 224
L D + RT+++ +++ R + S+ + G +IGK G + L+ E G V
Sbjct: 24 LNMDGEGEVAPRTEEEYAESQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKV 83
Query: 225 MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVV 284
+ +R+++VT S S KA L L+EG G+ RL++
Sbjct: 84 VQGVHDRVLSVTGS------LSGISKAYGLAAKGLLEGAPAMGMGGVIRTDGTHPIRLLI 137
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344
+ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G + ++ AV+
Sbjct: 138 SHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGSPAGIEKAVWE 194
Query: 345 VTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQ 404
+ L D+H R +VL +P R++ A G +S+ S P +
Sbjct: 195 IGKCLIDDH---------ERGYGTVL--YNPVVRVQPGAGPG-----PLSNGGSAPSGSM 238
Query: 405 -GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
G + H D SP ++ ++ GS R +H + G E+
Sbjct: 239 GGRSYNRTGHGADFSDSPPAFSRRS-------GSDAASR--PPPPTHTEDGEEM------ 283
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTP 522
T I +P +++G + G G+ + +R+ S A++ I P + +R+ I+G+
Sbjct: 284 -----QTQNISIPSDMVGCIIGRGGTKISEIRKTSNARISIAKAPHDDTGERMFTITGSA 338
Query: 523 DETQAAQSLL 532
+ A LL
Sbjct: 339 SANEKALYLL 348
>gi|255943089|ref|XP_002562313.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587046|emb|CAP94706.1| Pc18g04820 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 157/351 (44%), Gaps = 50/351 (14%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+++ R + S+ + G +IGK G + L+ E G V +P +R++TVT +
Sbjct: 46 DLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTG------Q 99
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+A +V L+EG + G+ SN G RL+++ NQ+G ++G+ G I +
Sbjct: 100 LRSLARAYAIVAKGLLEGAPQMGMGGIVSNNGTHP-VRLLISHNQMGTIIGRQGLKIKHI 158
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 159 QDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLLDDWQRGTGTVLYN 215
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
+ + L+ + P + PA G ++ + S +++ G D
Sbjct: 216 PAVRASLSGSQPLNN-NPPAGNGYQNNTS-SRQYNR--TGNGADF--------------- 256
Query: 424 WTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ G + R +SD G RG+ + G E+ T I +P +++G
Sbjct: 257 ----SDGGYNRRSNSDAGNRGYPL---VTEDGEEI-----------QTQNISIPADMVGC 298
Query: 483 VYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 299 IIGRGGTKITEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLL 349
>gi|196016215|ref|XP_002117961.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
gi|190579434|gb|EDV19529.1| hypothetical protein TRIADDRAFT_61998 [Trichoplax adhaerens]
Length = 364
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 149/350 (42%), Gaps = 63/350 (18%)
Query: 191 LCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPESRYSPAQ 249
L + G +IGKGG I++ + ++ A I++ ++PE R++TV GP
Sbjct: 51 LVEQKEAGRIIGKGGAKIKSFREQSTARINISDGSLPE---RIVTV---NGPIDAVC--- 101
Query: 250 KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
KA L+ +L E + ++ SS + L++ ++GKGG + E+R+ TG
Sbjct: 102 KAFKLICQKLDE--DFRIINNSSKSEPTIKFDLLIPVPHCRSIIGKGGGTVKEIRESTGA 159
Query: 310 SIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSV 369
+ I S+ L + +DRV+ I+G S + + ++ L +
Sbjct: 160 QVSIASNVLP---NSSDRVMTITGSSSAISKCIQRLSQLLSE----------------LP 200
Query: 370 LTETSPYSRLKD---PASFG---VHS-SVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
L + PY P +F VH + AV F PP Q P P
Sbjct: 201 LGQHVPYQPKPPNVPPTAFQNGQVHELTFAVPGPFPIPPHAQ------------LPYGPP 248
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
+ + S D+ +Q S G G+ ++S T + +P ++IG
Sbjct: 249 VPVITQIAPY----SVDIPSIVTQNFSAMSNG---GTFARS------TQLLKIPHDLIGC 295
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G + +RQISGA + + P +T R V ISGTP+ AAQ L+
Sbjct: 296 IIGRGGVKINEIRQISGANIKIASPNGDTTGRQVTISGTPESISAAQYLI 345
>gi|336465527|gb|EGO53767.1| hypothetical protein NEUTE1DRAFT_119308 [Neurospora tetrasperma
FGSC 2508]
gi|350295174|gb|EGZ76151.1| eukaryotic type KH-domain (KH-domain type I) [Neurospora
tetrasperma FGSC 2509]
Length = 481
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 110/457 (24%), Positives = 182/457 (39%), Gaps = 58/457 (12%)
Query: 103 LEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVS 162
+E APE SH + E T + ++ D Q ++V+ AP S +
Sbjct: 45 VEAPAPEDSHNADETAGSATPTPAPESNGTKVKGDKSEGQDVQGDTVVPDAPQSKATKDH 104
Query: 163 AVR-----PLSLES-DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAG 216
R P+S + D A + R+ + S+ + +IGKGG + ++ +
Sbjct: 105 GARSRAQPPVSAQPHDETAWIHVRS---------VISSPEAATIIGKGGENVSKIREMSN 155
Query: 217 AFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN-KG 275
A +V ER++TV+ AV F +I + + L SN
Sbjct: 156 AKCTVSDYQKGAVERILTVSG----------VVDAVAKAFGLIIRTLNNEPLAEPSNTHS 205
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
RL++ +G ++GKGG I E+++ +G + SD L +E VV G
Sbjct: 206 KTYPLRLLIPHVLIGSIIGKGGARIKEIQEASGARLNA-SDSCLPLSTERSLVVM--GVA 262
Query: 336 SKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPASFG 386
V A Y V L + F G +A TRS + + PY +FG
Sbjct: 263 DAVHIATYYVGSTLLEQLNERFGGPAASAYATRSGGPAASIPGGLQVVPYVPQPAGGNFG 322
Query: 387 VHSSVAVSHDFSQPPLTQGMD---HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ D+ Q +G D H G+ S AQ V + + G
Sbjct: 323 -------NRDYYQ--RNRGPDPRSHHGMPPSQYPAPYGAPHPAQPNPAVPMHYGAHAAGG 373
Query: 444 WSQGLSH------HKGGLELGSGSKSAIVTNT--TVEIIVPENVIGSVYGENGSNLLRLR 495
+ H H G +G A V T +I +P +++G++ G+ G + +R
Sbjct: 374 YGAAAPHVAPHVGHAGPAPHAAGPHGAPVAGAALTQQIYIPNDMVGAIIGKGGQKINEIR 433
Query: 496 QISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
QISG+ + ++EP+ S +R+V I+GT + + A LL
Sbjct: 434 QISGSVIKINEPQDNSNERLVTITGTEECNRMALYLL 470
>gi|376338927|gb|AFB33992.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338929|gb|AFB33993.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338931|gb|AFB33994.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338933|gb|AFB33995.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
Length = 86
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQLLKCISENDRVVQISGEF 335
++ +L++ SNQ GCLLGKGG IISEMRK T +IRI+ + L C ++D +VQI G+
Sbjct: 2 VITTKLLIPSNQTGCLLGKGGAIISEMRKQTRANIRILPKEDLPPCALDSDEMVQIVGDI 61
Query: 336 SKVKDAVYNVTGRLR 350
+ A+ VT RLR
Sbjct: 62 RAARAALVQVTSRLR 76
>gi|171686672|ref|XP_001908277.1| hypothetical protein [Podospora anserina S mat+]
gi|170943297|emb|CAP68950.1| unnamed protein product [Podospora anserina S mat+]
Length = 386
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 155/370 (41%), Gaps = 70/370 (18%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGK G + L+ E G V +P +R++T+T
Sbjct: 50 DEEYAQTQMTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVYDRVLTITG 109
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGC 291
G E+ KA V S L+EG G+ G +V A +L+++ NQ+G
Sbjct: 110 --GCEA----ISKAYAKVASALMEGAPAMGM------GGVVAANGTHPIKLLISHNQMGT 157
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++G+ G I ++ V+G +R+++ + + S +RVV++ G ++ A + + L D
Sbjct: 158 VIGRQGLKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIQRATWEICKCLVD 214
Query: 352 NHFSGTLN-----TARTRSTSSVLTETSPYSRLKDPASFGVHSSV---AVSHDFSQPPLT 403
+ G RT + + S ++ A +G S V DFS
Sbjct: 215 DWQRGQGTVLYNPVVRTGTGAGAPAMGGASSYPQERAPYGGSSRVTRTGNGADFSN---- 270
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
P+ + ++ + RG +H + G E+
Sbjct: 271 ---------------GGPRQYNRRSDSDAAQRGPP----------THDENGEEI------ 299
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTP 522
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+
Sbjct: 300 -----QTQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDDTGERMFTIMGSA 354
Query: 523 DETQAAQSLL 532
+ A LL
Sbjct: 355 KANETALYLL 364
>gi|345320820|ref|XP_001521752.2| PREDICTED: poly(rC)-binding protein 3-like [Ornithorhynchus
anatinus]
Length = 261
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSS 368
S+
Sbjct: 183 AST 185
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|451847129|gb|EMD60437.1| hypothetical protein COCSADRAFT_99089 [Cochliobolus sativus ND90Pr]
Length = 364
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/351 (22%), Positives = 153/351 (43%), Gaps = 45/351 (12%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
+ +++ R + S+ + G +IGK G + L+ E G V + +R+++VT S
Sbjct: 42 EAQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQGVHDRVLSVTGS---- 97
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA L L+EG G+ RL+++ NQ+G ++G+ G I +
Sbjct: 98 --LSGISKAYGLAAKGLLEGAPAMGMGGVIRTDGTHPIRLLISHNQMGTIIGRQGLKIKQ 155
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ +G +R+++ + + S +RVV++ G + ++ AV+ + L D+H
Sbjct: 156 IQDASG--VRMVAQKEMLPQS-TERVVEVQGSPAGIEKAVWEIGKCLIDDH--------- 203
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
R +VL +P R++ GV A + + G + H D SP
Sbjct: 204 ERGYGTVL--YNPAVRVQP----GVGPGPAANGGSAPAGGMGGRSYNRTGHGADFSDSPP 257
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
++ ++ GS R +H + G E+ T I +P +++G
Sbjct: 258 AFSRRS-------GSDAASR--PPPPTHTEDGEEM-----------QTQNISIPSDMVGC 297
Query: 483 VYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G GS + +R+ S A++ I P + +R+ I+G+ + A LL
Sbjct: 298 IIGRGGSKISEIRKTSNARISIAKAPHDDTGERMFTITGSASANEKALYLL 348
>gi|226504964|ref|NP_001141009.1| uncharacterized protein LOC100273088 [Zea mays]
gi|194702154|gb|ACF85161.1| unknown [Zea mays]
Length = 221
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 92/183 (50%), Gaps = 12/183 (6%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS 238
+++ + R L SN G +IGKGG+ I QS++GA I + + P ++R+I V+
Sbjct: 36 KEKPIHLRFLVSNASAGCIIGKGGSTINDFQSQSGARIQLSRSHEFFPGTNDRIIMVSG- 94
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ L+ +L+ +G +F+ + RLVV ++ G ++GKGG
Sbjct: 95 -----LFGEVMKAMELILEKLLAELLYQGEEFNEAEA-RPKVRLVVPNSSCGGIIGKGGA 148
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q + +DR+V ++G F +A+ + +L D H+
Sbjct: 149 TIKSFIEESHAGIK-ISPQDNNYVGLHDRLVTVTGTFDNQMNAIDLILKKLSEDVHYPAN 207
Query: 358 LNT 360
L++
Sbjct: 208 LSS 210
>gi|156051102|ref|XP_001591512.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980]
gi|154704736|gb|EDO04475.1| hypothetical protein SS1G_06958 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 371
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/359 (22%), Positives = 157/359 (43%), Gaps = 51/359 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + +++ R + S+ + G +IGKGG + L+ E G V + +R++T++
Sbjct: 42 DEEYAESQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTISG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
SR A +V L+EG + G+ SN G +L+++ NQ+G ++G+
Sbjct: 102 GCDSISR------AYSIVAKALLEGAPQMGMGGVVSNNGTHP-IKLLISHNQMGTIIGRQ 154
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 155 GLKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGNPEGIQKAVWEICKCLVDDW--- 208
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV--AVSHDFSQPPLTQGMDHLGLSHS 414
R T +VL +P R + S G+ ++ + + + S
Sbjct: 209 ------ARGTGTVL--YNPVVRTQTGGSGGMSQGNLGGTGREYGSSRVMRTGNGADFSE- 259
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
+P+ + ++ + RG +H + G EL T I
Sbjct: 260 ----GAPRSYNRRSDSDAAQRGPP----------THDENGEEL-----------QTQNIS 294
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT +A LL
Sbjct: 295 IPSDMVGCIIGRAGSKISEIRKTSGARISIAKSPHDETGERMFTIMGTAKANDSALYLL 353
>gi|258574629|ref|XP_002541496.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901762|gb|EEP76163.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 491
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 161/376 (42%), Gaps = 49/376 (13%)
Query: 183 QQEVSF---RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
Q E F R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 126 QDETGFIHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYTRGAVERILTVS--- 182
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGT 298
GP Q AV F +I + + LD S+ + RL++ +G ++GK G
Sbjct: 183 GP-------QDAVAKAFGLIIRTLNNEPLDAPSTAQSKTYPLRLLIPHILIGSIIGKSGV 235
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFS 355
I E+++ +G + SD L +E R + I G V A Y V L + F
Sbjct: 236 RIREIQEHSGARLN-ASDSCLPLSTE--RSLVILGVADAVHIATYYVAATLVEQLTERFG 292
Query: 356 GTLNTA---RTRSTSSVL---TETSPY------SRLKDPASFGVH---SSVAVSHDFSQP 400
G +A R+ + V+ + PY + P SF H ++ A+S + P
Sbjct: 293 GPAASAYATRSGGPAGVIPGGMQVVPYVPQPAGGQYGHPDSFKRHHPQANRAMSTGYGMP 352
Query: 401 PLTQGMDHLGLS-HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGW---SQGLSHHKGGLE 456
+ G G S H++ P Q TG + G S G G
Sbjct: 353 YMQGGP---GPSPHAMQQPIHYNASPRQGYTGAGPHQPAPYGAPQPPHSHGTPAQPMGAP 409
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
+ G T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V
Sbjct: 410 VAGGP-------LTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLV 462
Query: 517 VISGTPDETQAAQSLL 532
I+GT + Q A +L
Sbjct: 463 TITGTQECNQMALYML 478
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 418 QIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQ--ECN---- 471
Query: 249 QKAVVLVFSRLIE 261
Q A+ +++SRL E
Sbjct: 472 QMALYMLYSRLGE 484
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 412 GGPLTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 467
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 468 QECNQMALYMLYSRL 482
>gi|85111179|ref|XP_963814.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|28925551|gb|EAA34578.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|38566984|emb|CAE76284.1| related to hnRNP protein E2 [Neurospora crassa]
Length = 489
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 109/457 (23%), Positives = 182/457 (39%), Gaps = 58/457 (12%)
Query: 103 LEVFAPESSHRSSEALSIETQHRLFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVS 162
+E PE SH + E T + ++ D +Q ++V+ AP S +
Sbjct: 45 VEAPVPEDSHNADETAGSATPTPAPESNGTKVKGDKSEGQDAQGDTVVPDAPQSKATKDH 104
Query: 163 AVR-----PLSLES-DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAG 216
R P+S + D A + R+ + S+ + +IGKGG + ++ +
Sbjct: 105 GARSRAQPPVSAQPHDETAWIHVRS---------VISSPEAATIIGKGGENVSKIREMSN 155
Query: 217 AFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN-KG 275
A +V ER++TV+ AV F +I + + L SN
Sbjct: 156 AKCTVSDYQKGAVERILTVSG----------VVDAVAKAFGLIIRTLNNEPLAEPSNTHS 205
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
RL++ +G ++GKGG I E+++ +G + SD L +E VV G
Sbjct: 206 KTYPLRLLIPHVLIGSIIGKGGARIKEIQEASGARLNA-SDSCLPLSTERSLVVM--GVA 262
Query: 336 SKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPASFG 386
V A Y V L + F G +A TRS + + PY +FG
Sbjct: 263 DAVHIATYYVGSTLLEQLNERFGGPAASAYATRSGGPAASIPGGLQVVPYVPQPAGGNFG 322
Query: 387 VHSSVAVSHDFSQPPLTQGMD---HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRG 443
+ D+ Q +G D H G+ S AQ V + + G
Sbjct: 323 -------NRDYYQ--RNRGPDPRSHHGMPPSQYPAPYGAPHPAQPNPAVPMHYGAHAAGG 373
Query: 444 WSQGLSH------HKGGLELGSGSKSAIVTNT--TVEIIVPENVIGSVYGENGSNLLRLR 495
+ H H G +G A V T +I +P +++G++ G+ G + +R
Sbjct: 374 YGAAAPHVAPHVGHAGPAPHAAGPHGAPVAGAALTQQIYIPNDMVGAIIGKGGQKINEIR 433
Query: 496 QISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
QISG+ + ++EP+ S +R+V I+GT + + A LL
Sbjct: 434 QISGSVIKINEPQDNSNERLVTITGTEECNRMALYLL 470
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 98
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 99 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 153
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
E+R+ TG +++ D L + +R V ISG
Sbjct: 154 EIRESTGAQVQVAGDMLP---NSTERAVTISG 182
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 185
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 91 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 150
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 151 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 183
>gi|46125203|ref|XP_387155.1| hypothetical protein FG06979.1 [Gibberella zeae PH-1]
Length = 372
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 49/355 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 44 QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAI 103
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SR A +V L+EG G+ +L+++ NQ+G ++G+ G I
Sbjct: 104 SR------AYAIVARALLEGAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGRQGLKIKH 157
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 158 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAIWEICKCLVDDW--------- 205
Query: 363 TRSTSSVL----TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
R T +VL T P S G + S P + + + S+
Sbjct: 206 QRGTGTVLYNPVVRTQPSSGGNTSGGAGFNQGSGRSDYGGSPRVMRTGNGADFSN----- 260
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
S + + ++ + LRG +H + G E+ T I +P +
Sbjct: 261 GSSRPYNRRSDSDAALRGPP----------THDENGEEI-----------QTQNISIPAD 299
Query: 479 VIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 300 MVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 354
>gi|350409768|ref|XP_003488838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
impatiens]
Length = 439
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 92/182 (50%), Gaps = 22/182 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R +Q + R+L + G++IGKGG I L+S+ A I V P+C ER++T++
Sbjct: 69 RYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV----PDCPGPERVLTIS- 123
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
S+ P V+ V + ++ E G S++ ++ R++V +Q GC++GKGG
Sbjct: 124 SDLP---------TVLQVLNEVVPNLEENGSRHGSDE---IDVRMLVHQSQAGCIIGKGG 171
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I E+R+ TG I+I S C DR++ I G+ + + + + ++ + G
Sbjct: 172 LKIKELREKTGARIKIYSHC---CPHSTDRLISICGKPNTCIECIRELIATIKTSPLKGV 228
Query: 358 LN 359
N
Sbjct: 229 NN 230
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 365 TTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQMA 424
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 425 QYLLQ 429
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D GA+IGKGG IR ++S++GA I++ + ++R+IT+T
Sbjct: 374 DLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITG 416
>gi|340718655|ref|XP_003397779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
terrestris]
Length = 466
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R +Q + R+L + G++IGKGG I L+S+ A I V P+C ER++T+++
Sbjct: 55 RYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV----PDCPGPERVLTISS 110
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
V+ V + ++ E G S++ ++ R++V +Q GC++GKGG
Sbjct: 111 D----------LPTVLQVLNEVVPNLEENGSRHGSDE---IDVRMLVHQSQAGCIIGKGG 157
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I E+R+ TG I+I S C DR++ I G+ + + + + ++ + G
Sbjct: 158 LKIKELREKTGARIKIYSHC---CPHSTDRLISICGKPNTCIECIRELIATIKTSPLKGV 214
Query: 358 LN 359
N
Sbjct: 215 NN 216
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 392 TTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQMA 451
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 452 QYLLQ 456
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D GA+IGKGG IR ++S++GA I++ + ++R+IT+T
Sbjct: 401 DLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITG 443
>gi|119193374|ref|XP_001247293.1| hypothetical protein CIMG_01064 [Coccidioides immitis RS]
gi|303312121|ref|XP_003066072.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105734|gb|EER23927.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320040053|gb|EFW21987.1| KH domain RNA binding protein [Coccidioides posadasii str.
Silveira]
gi|392863461|gb|EAS35786.2| KH domain RNA binding protein [Coccidioides immitis RS]
Length = 489
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 95/376 (25%), Positives = 160/376 (42%), Gaps = 50/376 (13%)
Query: 183 QQEVSF---RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
Q E F R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 127 QDETGFIHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYTRGAVERILTVS--- 183
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGT 298
GP Q AV F +I + + LD S+ + RL++ +G ++GK G
Sbjct: 184 GP-------QDAVAKAFGLIIRTLNNEPLDSPSTAQSKTYPLRLLIPHILIGSIIGKSGV 236
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFS 355
I E+++ +G + SD L +E R + I G V A Y V L + F
Sbjct: 237 RIREIQEHSGARLNA-SDSCLPLSTE--RSLVILGVADAVHIATYYVAATLVEQLTERFG 293
Query: 356 GTLNTAR-TRSTSSVLT-----ETSPY------SRLKDPASFGVH---SSVAVSHDFSQP 400
G +A TRS + PY + P SF H ++ A+S + P
Sbjct: 294 GPAASAYATRSGGPAGVVPGGMQVVPYVPQPAGGQYGHPDSFKRHHPQANRAMSTGYGVP 353
Query: 401 PL-TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGW---SQGLSHHKGGLE 456
+ G G+ + +SP+ Q TG + G S G G
Sbjct: 354 YMHGPGPSPHGMQQPIHYNASPR----QGYTGAGPHQPAPYGAPQPPHSHGTPAQPMGAP 409
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
+ G T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V
Sbjct: 410 VAGGP-------LTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLV 462
Query: 517 VISGTPDETQAAQSLL 532
I+GT + Q A +L
Sbjct: 463 TITGTQECNQMALYML 478
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 418 QIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQ--ECN---- 471
Query: 249 QKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 472 QMALYMLYSRL 482
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G +
Sbjct: 418 QIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGTQECNQM 473
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 474 ALYMLYSRL 482
>gi|310792993|gb|EFQ28454.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 384
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 156/360 (43%), Gaps = 37/360 (10%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D +++ R + S+ + G +IGK G + L+ E G V + +R++T+T
Sbjct: 39 DEEYAMAQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +S +A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 --GCQS----VAEAYAIVAKALLEGAPSMGMGGVVQNNGTHPIKLLISHNQMGTIIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G +K A++ + L D+ GT
Sbjct: 153 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIKGAIWEICKCLVDDWQRGT 209
Query: 358 ---LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
L R T T T+ + +S G SS D+S P + + +
Sbjct: 210 GTVLYNPVVR-TQPGTTSTAGSGSTPNYSSGGGRSS-----DYSAPRVMR------TGNG 257
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNTTVEI 473
D +S G G S+G +H + G EL T I
Sbjct: 258 ADFSASNTNNNNNNGGGGRPYGRRSDSDAASRGPPTHDENGEEL-----------QTQNI 306
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 307 SIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDDTGERMFTIMGTAKANESALFLL 366
>gi|148229933|ref|NP_001086212.1| MGC84166 protein [Xenopus laevis]
gi|49256273|gb|AAH74333.1| MGC84166 protein [Xenopus laevis]
Length = 225
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 90/183 (49%), Gaps = 11/183 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R V ISG + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKP 182
Query: 366 TSS 368
S+
Sbjct: 183 ASA 185
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 41.6 bits (96), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 151
>gi|212275472|ref|NP_001130567.1| uncharacterized protein LOC100191666 [Zea mays]
gi|194689502|gb|ACF78835.1| unknown [Zea mays]
gi|413934214|gb|AFW68765.1| hypothetical protein ZEAMMB73_642279 [Zea mays]
Length = 580
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L KVGA+IG G +R L E A + + E+ + + E + P
Sbjct: 57 FRMLIPAQKVGAIIGHKGERVRRLCEETRACVRIIGGHLCAAEQAVIIFGREQLDEPLPP 116
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A A++ V+ + I S LD + ++ R++ S Q L+G+ G +I+ + + +
Sbjct: 117 AMDALLRVYQQTINNDS---LDVGPDN--VIVRRILAPSEQAASLIGEHGVMINSIMEAS 171
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
T IR++ D L E DRV++I G + V A+ V LR
Sbjct: 172 QTDIRVLDDDLPPVALEEDRVIEIWGSPAGVYKALELVASHLR 214
>gi|30680512|ref|NP_850764.1| binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana]
gi|332003360|gb|AED90743.1| binding to TOMV RNA 1L (long form) protein [Arabidopsis thaliana]
Length = 334
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 154/365 (42%), Gaps = 78/365 (21%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLIT 234
+A + ++ R L SN G+VIGKGG+ I Q+++GA I + P +R+I
Sbjct: 27 EADSAEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIM 86
Query: 235 VTASEGPESRYSPAQKAVVLVFSRL-IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
++ S + L+ +L E +E G + + + RLVV ++ G ++
Sbjct: 87 ISGS------IKEVVNGLELILDKLHSELHAEDGNEVEPRRRI----RLVVPNSSCGGII 136
Query: 294 GKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RD 351
GKGG I + + I+I D +S DR+V +SG F + A+ + +L D
Sbjct: 137 GKGGATIKSFIEESKAGIKISPLDNTFYGLS--DRLVTLSGTFEEQMRAIDLILAKLTED 194
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL 411
+H+S ++ SPYS G+ S F PP +
Sbjct: 195 DHYSQNVH--------------SPYSYA------GLFYS-----GFHGPPYAYAL----- 224
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
P + TA G + + G G +HK +TTV
Sbjct: 225 ---------PSVATA----GYNSVNYAPNGSGGK--YQNHKE------------EASTTV 257
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDETQAA 528
I V + IG V G G N++ + Q++GA++ + + G+TDR V I+G Q A
Sbjct: 258 TIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITGPQRAIQQA 317
Query: 529 QSLLQ 533
+++++
Sbjct: 318 ETMIK 322
>gi|328781397|ref|XP_392536.4| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Apis
mellifera]
Length = 482
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R +Q + R+L + G++IGKGG I L+S+ A I V P+C ER++T+++
Sbjct: 76 RYRQGDDELRLLIPSKVAGSIIGKGGQNITKLRSQYKASIIV----PDCPGPERVLTISS 131
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
V+ V + ++ E G S++ ++ R++V +Q GC++GKGG
Sbjct: 132 D----------LPTVLQVLNEVVPNLEENGSRHGSDE---IDVRMLVHQSQAGCIIGKGG 178
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I E+R+ TG I+I S C DR++ I G+ + + + + ++ + G
Sbjct: 179 LKIKELREKTGARIKIYSHC---CPHSTDRLISICGKPTTCIECIRELIATIKTSPLKGV 235
Query: 358 LN 359
N
Sbjct: 236 NN 237
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 408 TTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQMA 467
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 468 QYLLQ 472
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D GA+IGKGG IR ++S++GA I++ + ++R+IT+T
Sbjct: 417 DLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITG 459
>gi|219886695|gb|ACL53722.1| unknown [Zea mays]
Length = 702
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 11/202 (5%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATL-DARTQQQEVSFRILCSNDKVGAVIGKGG 205
N+ AP+ VS +PL ++ DA T QE+S +I N KVG VIGK G
Sbjct: 104 NNTPAPAPAPDSQAVSDEKPLEAAAEAPQQEGDAATAVQEISRKIEVPNSKVGVVIGKAG 163
Query: 206 TIIRALQSEAGAFISVGATMPECDE----RLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
IR LQ +GA I + + E D R + + + G + A++ + V +
Sbjct: 164 ETIRNLQISSGAKIQITKDI-EADSNALTRPVELVGTPGSVDK---AEQLIKSVIAEAEA 219
Query: 262 GTSEK--GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
G S F S + + V N+VG ++GKGG I M+ +G I++I
Sbjct: 220 GGSPALIARGFGSGQPGSEQFEMTVPDNKVGLIIGKGGETIKGMQTKSGARIQLIPQHPP 279
Query: 320 KCISENDRVVQISGEFSKVKDA 341
+ ++ +R+V+++G +++ A
Sbjct: 280 EGVTLTERIVRVTGNKKQIEAA 301
>gi|154295229|ref|XP_001548051.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347829292|emb|CCD44989.1| similar to KH domain RNA-binding protein [Botryotinia fuckeliana]
Length = 371
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 157/359 (43%), Gaps = 51/359 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + +++ R + S+ + G +IGKGG + L+ E G V + +R++T++
Sbjct: 42 DEEYAESQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTISG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
SR A +V L+EG + G+ SN G +L+++ NQ+G ++G+
Sbjct: 102 GCDSISR------AYSIVAKALLEGAPQMGMGGVVSNNGTHP-IKLLISHNQMGTIIGRQ 154
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 155 GLKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGNPEGIQKAIWEICKCLVDDW--- 208
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV--AVSHDFSQPPLTQGMDHLGLSHS 414
R T +VL +P R + S G+ ++ + + + S
Sbjct: 209 ------ARGTGTVL--YNPMVRTQTGNSGGMSQGNVGGTGREYGSSRVMRTGNGADFSE- 259
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
S+P+ + ++ + RG +H + G EL T I
Sbjct: 260 ----SAPRSYNRRSESDAAQRGPP----------THDENGEEL-----------QTQNIS 294
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT +A LL
Sbjct: 295 IPADMVGCIIGRAGSKISEIRKTSGARISIAKSPHDETGERMFTIMGTAKANDSALYLL 353
>gi|212529012|ref|XP_002144663.1| KH domain RNA binding protein [Talaromyces marneffei ATCC 18224]
gi|210074061|gb|EEA28148.1| KH domain RNA binding protein [Talaromyces marneffei ATCC 18224]
Length = 461
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 97/427 (22%), Positives = 168/427 (39%), Gaps = 73/427 (17%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ--QQEVSF---RILCSNDKVGAVI 201
+SV+ SS + ++ + +DR + + Q Q E S+ R + S+ + I
Sbjct: 60 DSVVNGKDVSSATDTQPIQSTASHADRATSQPPQNQTPQDESSWIHIRAVISSQEAATCI 119
Query: 202 GKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
GKGG + ++ +GA +V ER++TV+ GP Q AV F +I
Sbjct: 120 GKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP-------QDAVAKAFGLIIR 169
Query: 262 GTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLK 320
+ + L+ S+ + RL++ +G ++GKGG I E+++ +G + SD L
Sbjct: 170 TLNNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKGGVRIREIQEASGARLNA-SDACLP 228
Query: 321 CISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLTETS-- 374
+E R + + G V A Y V L + F G +A TRS
Sbjct: 229 LSTE--RSLVVLGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRSGGPAGVVPGGM 286
Query: 375 ------------------------PYSRLKDPASFGV---HSSVAVSHDFSQPPLTQGMD 407
P + P +G H A +QPPL G
Sbjct: 287 QVVPYVPQPAGGQYGHPDSARRHYPQNNRPGPGPYGAPYPHGGPAAQAPVTQPPLHYGGG 346
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
++ P P + G H L S +T
Sbjct: 347 AARAPYAGAGPHQPAPY------------------GAPHAQPHGASTQPLAGVVSSQPIT 388
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
+I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT + Q
Sbjct: 389 Q---QIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQM 445
Query: 528 AQSLLQA 534
A +L A
Sbjct: 446 ALYMLYA 452
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGGT I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 385 QPITQQIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQ--EC 442
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ ++++RL
Sbjct: 443 N----QMALYMLYARL 454
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
+ ++ + ++ VG ++GKGGT I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 387 ITQQIYIPNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQE----NSNERLVTITGTQEC 442
Query: 338 VKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 443 NQMALYMLYARL 454
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR++ KVG++IG+ G +I+ + E A I V +R++ ++ E ES SP
Sbjct: 83 FRLIVPVVKVGSIIGRKGDLIKKMCEETRARIRVLDGAVGTPDRVVLISGKEELESPLSP 142
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A AV+ VF R + G SE + K + RL+VAS Q L+GK G++I +++ T
Sbjct: 143 AMDAVIRVFKR-VSGLSE---NEDEAKASFCSIRLLVASTQAINLIGKQGSLIKSIQEST 198
Query: 308 GTSIRIISDQLL 319
G S+R++S +L
Sbjct: 199 GASVRVLSGGML 210
>gi|402587695|gb|EJW81630.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 273
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/260 (24%), Positives = 114/260 (43%), Gaps = 48/260 (18%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEN-DRVVQISGEFSKVK 339
+++V + G ++G+GG+ I E+R+ TG +++ S +C ++ +R+V ++GE K+
Sbjct: 49 KVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFS----RCAPQSTERIVLLNGEVEKII 104
Query: 340 DAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-KDPASFGVHSSVAVSHDFS 398
D + + L++ G + PY + DP + +F
Sbjct: 105 DCINIIIDVLKEIPIKGPVR---------------PYDPMYYDPDIISDYGGYVPDRNFI 149
Query: 399 QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG 458
+ +G D G S + P G GG+
Sbjct: 150 S-RVGRGRD-FGFSSGIIPSRYP-------------------------GRDDRYGGMRDM 182
Query: 459 SGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
G S I T ++ +P+ + G++ G+ GS + R+R+ SGA++ V R DRI+ I
Sbjct: 183 MGRYSPIPAMQTTQVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGGDRIITI 242
Query: 519 SGTPDETQAAQSLLQAFILT 538
SGT ++ QAAQ LLQ + T
Sbjct: 243 SGTREQIQAAQYLLQQCVRT 262
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 85/160 (53%), Gaps = 12/160 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISDG--SCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG SI++ S+ L + +R V +SG ++ +Y +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQI 171
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAA 528
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD A
Sbjct: 340 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 399
Query: 529 QSLLQAFI 536
Q L+ I
Sbjct: 400 QYLINMRI 407
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V+++ +GC++GKGGT I+E+R+++G IR IS+ + DR + ISG V A
Sbjct: 341 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGNTDRTITISGNPDSVALA 399
Query: 342 VYNVTGRL 349
Y + R+
Sbjct: 400 QYLINMRI 407
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R A R QQQ+ + SND +G +IGKGGT I ++ +GA I + C+ER
Sbjct: 326 RTANPANRAQQQQHEMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEERE 379
Query: 233 -----ITVTASEGPES 243
T+T S P+S
Sbjct: 380 GGNTDRTITISGNPDS 395
>gi|146336943|gb|ABQ23585.1| putative KH-domain containing protein [Medicago truncatula]
Length = 334
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 151/352 (42%), Gaps = 76/352 (21%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
R L SN G+VIGKGG+ I QS++GA I + P +R+I V+ +
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA------I 92
Query: 246 SPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ +AV L+ S+L+ E SE D RL+V + G ++GKGG I
Sbjct: 93 NEVLRAVELILSKLLSELHSEDDNDVEPK----TKVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGTLNTART 363
+ + I+ IS Q +NDR+V ++G + + + +L D H+S ++++ T
Sbjct: 149 EESQAGIK-ISPQDNSYYGQNDRIVTVTGTLDEQMRGIDLIVSKLAEDPHYSHSMSSPFT 207
Query: 364 RSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
S + V S Y + P ++ V SVA PP G+++ P+
Sbjct: 208 YSGAYV----SGYQGV--PYTY-VLPSVA-------PPAYNGVNYR--------PNG--- 242
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSV 483
TG + S + + ++ I V + IG V
Sbjct: 243 ------TGAKFQNSKE--------------------------DRSNSMTIGVADEHIGLV 270
Query: 484 YGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
G G N+ + Q SGAK+ + + G+TDR V I+G+ + A+S++
Sbjct: 271 VGRGGRNISDISQTSGAKIKISDRGDYISGTTDRKVTITGSQRAIRTAESMI 322
>gi|256083133|ref|XP_002577804.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230299|emb|CCD76470.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 298
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 126/310 (40%), Gaps = 62/310 (20%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
SN+ V+ RL+V +Q GC++G+ G I E+R+ +G + L C DRV+
Sbjct: 1 MQSNRDDGVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQMLCPC--STDRVI 58
Query: 330 QISGEFSKVKDAVYNVTGRL--------RDNH------------FSG--------TLNTA 361
Q+ G+ KV D + ++ L R N+ + G LN
Sbjct: 59 QLVGDVGKVLDCLRSIAELLEGAPPKGSRQNYDARNADEFISPEYGGWGVGNQGPGLNLV 118
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
R+R+ +V + P++ + FG +S A + Q GL H+
Sbjct: 119 RSRN--NVANTSYPHNNILTTGIFGGGASGATGRNGGQTTSVSQALAGGLPHA------- 169
Query: 422 KLWTAQTVTGVHLRGSSDVG---------------RGWSQGLSHHKGGLELGSGSKSAIV 466
TG G + G G +GL + + S +
Sbjct: 170 SAAAMLAATGGQTTGGPNPGTAGDAAAATAAAMVAAGLMRGLPNRM--------AMSILT 221
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T+ ++ V +IG++ G +G + ++R S A + + + G DRI+ I+GTP++ Q
Sbjct: 222 PTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITGTPEQIQ 281
Query: 527 AAQSLLQAFI 536
AQ LLQ +
Sbjct: 282 NAQFLLQMCV 291
>gi|322707130|gb|EFY98709.1| KH domain RNA-binding protein [Metarhizium anisopliae ARSEF 23]
Length = 368
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 157/359 (43%), Gaps = 51/359 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 ECDAISR------AYAIVARALLEGAPAMGMGGIVQSNGTHPIKLLISHNQMGTIIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 153 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPDGIQRAVWEICKCLVDDW---- 205
Query: 358 LNTARTRSTSSVLTETSPYSRLK-DPASFGV-HSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
R T +VL +P R + S G +++ D+ P + + + S+
Sbjct: 206 -----QRGTGTVL--YNPVVRTQAGSGSLGSNYNNGGGRSDYGSPRVMRTGNGADFSNGG 258
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNTTVEII 474
P S R SD S+G +H + G E+ T I
Sbjct: 259 VRPFS-------------RRSDSDAA---SRGPPTHDENGEEI-----------QTQNIS 291
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 292 IPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 350
>gi|226529800|ref|NP_001141507.1| uncharacterized protein LOC100273619 [Zea mays]
gi|194704864|gb|ACF86516.1| unknown [Zea mays]
gi|223950149|gb|ACN29158.1| unknown [Zea mays]
gi|413941634|gb|AFW74283.1| hypothetical protein ZEAMMB73_757154 [Zea mays]
Length = 702
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATL-DARTQQQEVSFRILCSNDKVGAVIGKGG 205
N AP+ VS +PL ++ DA T QE+S +I N KVG VIGK G
Sbjct: 104 NDTPAPAPAPDSQAVSDEKPLEAAAEAPQQEGDAATAVQEISRKIEVPNSKVGVVIGKAG 163
Query: 206 TIIRALQSEAGAFISVGATMPECDE----RLITVTASEGPESRYSPAQKAVVLVFSRLIE 261
IR LQ +GA I + + E D R + + + G + A++ + V +
Sbjct: 164 ETIRNLQISSGAKIQITKDI-EADSNALTRPVELVGTPGSVDK---AEQLIKSVIAEAEA 219
Query: 262 GTSEK--GLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
G S F S + + V N+VG ++GKGG I M+ +G I++I
Sbjct: 220 GGSPALIARGFGSGQPGSEQFEMTVPDNKVGLIIGKGGETIKGMQTKSGARIQLIPQHPP 279
Query: 320 KCISENDRVVQISGEFSKVKDA 341
+ ++ +R+V+++G +++ A
Sbjct: 280 EGVTLTERIVRVTGNKKQIEAA 301
>gi|398397391|ref|XP_003852153.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
gi|339472034|gb|EGP87129.1| hypothetical protein MYCGRDRAFT_109444 [Zymoseptoria tritici
IPO323]
Length = 362
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 163/375 (43%), Gaps = 62/375 (16%)
Query: 171 SDRVATLDA----RTQ----QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG 222
+D++ L+A RT+ Q +++ R + ++ + G +IGK G + L+ + G V
Sbjct: 18 ADKMGGLNADERPRTEEEYAQAQLTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVS 77
Query: 223 ATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARL 282
+P +R++TVT + + A LV L++G + G+ RL
Sbjct: 78 KVVPGVHDRVLTVTGA------LTGIADAYGLVADSLVKGAPQMGMGGVVGSPNTHPIRL 131
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+++ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G ++ +V
Sbjct: 132 LISHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQKSV 188
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
+ + L D+ R +VL SP R++ A PP
Sbjct: 189 WEIGKCLIDDE---------QRGYGTVL--YSPAVRVQGGA----------------PPA 221
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
G +G +P+ + A+T G + S GG + G
Sbjct: 222 INGASPVGFGG-----GAPRSF-ARTGNGADFTSGAPA----SSYPPRRNGGSDAGP--- 268
Query: 463 SAIVTN----TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVV 517
+V + T I +P +++G + G GS + +R+ SGA++ I P S +R+
Sbjct: 269 PPVVEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISIAKAPHDESGERMFT 328
Query: 518 ISGTPDETQAAQSLL 532
I+G P + A LL
Sbjct: 329 ITGGPSANEKALYLL 343
>gi|116192195|ref|XP_001221910.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88181728|gb|EAQ89196.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 375
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 156/363 (42%), Gaps = 57/363 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 42 DEEYAQTQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVYDRVLTITG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G E+ +A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 102 --GCEA----ISRAYAVVARALLEGAPTIGMGGVVQSNGTHPIKLLISHNQMGTIIGRQG 155
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN--HFS 355
I ++ V+G +R+++ + + S +R+V++ G ++ A++ + L D+ +
Sbjct: 156 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAIWEICKCLVDDWQRGA 212
Query: 356 GTL---NTARTRSTSSVLTETSPYSRLKDPASFGVH--SSVAVSHDFSQPPLTQGMDHLG 410
GT+ RT+ + T + ++D A +G + DFS
Sbjct: 213 GTVLYNPVVRTQGAGAAPGVTGTTNFVQDRAPYGGSRVTRTGNGADFSN----------- 261
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
P+ + ++ + RG +H + G E+ T
Sbjct: 262 --------GGPRPYNRRSDSDAAARGPP----------THDENGEEI-----------QT 292
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQ 529
I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+ + A
Sbjct: 293 QNISIPADMVGCIIGRGGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANERAL 352
Query: 530 SLL 532
LL
Sbjct: 353 FLL 355
>gi|242024312|ref|XP_002432572.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
gi|212518032|gb|EEB19834.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
Length = 365
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 86/174 (49%), Gaps = 30/174 (17%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPESRY 245
R+L + G++IGKGG I L++E A + T+P+C ER++TV A
Sbjct: 25 IRLLIPSKVAGSIIGKGGHNISKLRTEHNASV----TVPDCPGPERILTVAAD------- 73
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
++ V S ++ + +++ R++V +Q GC++GKGG I E+R+
Sbjct: 74 ---LDTMLRVVSEILPNLED-----------VIDIRMLVHQSQAGCIIGKGGLKIKELRE 119
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
TG I+I S+ C DR+VQI+G+ + DA+ L+ + G N
Sbjct: 120 KTGARIKIYSNC---CPQSTDRIVQINGKGNLCVDAIRECMELLKTSPIKGMNN 170
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 7/81 (8%)
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG LG S VT +P+++ G++ G+ GS + ++R SGA + + EP GS
Sbjct: 282 GGPPLGGEKNSTQVT-------IPKDLAGAIIGKGGSRIRKIRMESGAAITIDEPLPGSN 334
Query: 513 DRIVVISGTPDETQAAQSLLQ 533
DRI+ ISGTP++ Q AQ LLQ
Sbjct: 335 DRIITISGTPNQIQMAQYLLQ 355
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV--TASEGPESR 244
S ++ D GA+IGKGG+ IR ++ E+GA I++ +P ++R+IT+ T ++ ++
Sbjct: 292 STQVTIPKDLAGAIIGKGGSRIRKIRMESGAAITIDEPLPGSNDRIITISGTPNQIQMAQ 351
Query: 245 YSPAQKAVVLV 255
Y Q+ V L+
Sbjct: 352 YLLQQRLVYLI 362
>gi|281366597|ref|NP_001163493.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|386771584|ref|NP_001246873.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
gi|134085557|gb|ABO52837.1| IP17311p [Drosophila melanogaster]
gi|272455272|gb|ACZ94764.1| mushroom-body expressed, isoform E [Drosophila melanogaster]
gi|383292063|gb|AFH04544.1| mushroom-body expressed, isoform F [Drosophila melanogaster]
Length = 557
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 16/160 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT------ 75
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A+ F+ LI E+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 76 ----NAIFSAFT-LITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 130
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG SI++ S+ L + +R V +SG ++ +Y +
Sbjct: 131 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQI 167
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAA 528
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD A
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 529 QSLL 532
Q L+
Sbjct: 349 QYLI 352
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V+++ +GC++GKGGT I+E+R+++G IR IS+ + DR + ISG V A
Sbjct: 290 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 342 VY 343
Y
Sbjct: 349 QY 350
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R A R QQQ+ + SND +G +IGKGGT I ++ +GA I + C+ER
Sbjct: 275 RTANPANRAQQQQ--HEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRI----SNCEERE 328
Query: 233 -----ITVTASEGPES 243
T+T S P+S
Sbjct: 329 GGNTDRTITISGNPDS 344
>gi|449304748|gb|EMD00755.1| hypothetical protein BAUCODRAFT_60994 [Baudoinia compniacensis UAMH
10762]
Length = 333
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/359 (23%), Positives = 159/359 (44%), Gaps = 68/359 (18%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + ++ + G +IGK G + L+ + G V +P +R++TVT GP
Sbjct: 15 QAQITLRAIVTSKEAGVIIGKAGQNVAELRDKTGVRAGVSKVVPGVHDRVLTVT---GPL 71
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-----RLVVASNQVGCLLGKGG 297
+ S +A LV L++G + G+ G++ N RL+++ NQ+G ++G+ G
Sbjct: 72 TGIS---EAYGLVADGLVKGAPQMGMG-----GVVANPNTHPIRLLISHNQMGTIIGRQG 123
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I +++ +G +R+++ + + S +R+V+I G V+ AV+ + L D+
Sbjct: 124 LKIKQIQDASG--VRMVAQKEMLPQS-TERIVEIQGTPDGVQKAVWEIGKCLIDDQ---- 176
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R +VL SP R++ A T M+ G
Sbjct: 177 -----ERGYGTVL--YSPAVRVQGAAP------------------TPAMNGTGY------ 205
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE---II 474
+P+ + +T G GS + S G S +G A+ ++ I
Sbjct: 206 -GAPRGYN-RTGNGADFTGSGAPYQRRSTGPSD--------TGPPPAVEDGEDIQTQNIS 255
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I+G + A LL
Sbjct: 256 IPADMVGCIIGRGGSKISEIRKSSGARISIAKAPHDDTGERMFTITGGQTANEKALYLL 314
>gi|407924223|gb|EKG17277.1| K-like protein [Macrophomina phaseolina MS6]
Length = 357
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S+ + G +IGK G + L+ E G V +P +R++TVT +
Sbjct: 42 QAQLTLRAIVSSKEAGVIIGKAGQNVANLRDETGVRAGVSKVVPGVHDRVLTVTGA---- 97
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA LV L+EG G+ N RL+++ NQ+G ++G+ G I +
Sbjct: 98 --LSGISKAYHLVAKGLLEGAPSVGMGGVINTSGTHPVRLLISHNQMGTIIGRAGLKIKQ 155
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
++ +G +R+++ + + S +R+V+I G ++ A + + L D+H G
Sbjct: 156 IQDASG--VRMVAQKEMLPQS-TERIVEIQGTPEGIEKATWEIGKCLIDDHERG 206
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 21/165 (12%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS 238
R +V R L ++ GA+IGKGG+ I+ L+ + A ++V +T PE R++T+ A+
Sbjct: 72 RGDGPKVELRFLLASKNAGAIIGKGGSNIKRLRQDYKASVTVPDSTSPE---RVLTIGAN 128
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
G A + V+ + +L + + K DF RL+V +Q GC++G+ G
Sbjct: 129 LGT------ALECVLDIIPKLEDYKNYKNNDFD------CEMRLLVHQSQAGCIIGRAGF 176
Query: 299 IISEMRKVTGTSIRIISDQLLKCISEN-DRVVQISGEFSKVKDAV 342
I E+R+ TG I++ S +C E+ +RVV I G+ V D +
Sbjct: 177 KIKELRERTGAQIKVYS----QCCPESTERVVAIGGKPKIVVDCI 217
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 60/95 (63%), Gaps = 6/95 (6%)
Query: 440 VGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISG 499
+G+ +SQ + GG+ G++ + + ++ +P+++ G++ G+ G+ + +R+ S
Sbjct: 448 MGQNFSQ---DNSGGMGQMFGNEGNL---PSTQVTIPKDLAGAIIGKGGARIQEIRRQSN 501
Query: 500 AKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
A++++ E GS DRI+ I+GT ++ Q+AQ LLQ+
Sbjct: 502 AQIVIDEGLPGSNDRIITITGTHEQIQSAQFLLQS 536
>gi|367050644|ref|XP_003655701.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
gi|347002965|gb|AEO69365.1| hypothetical protein THITE_2119679 [Thielavia terrestris NRRL 8126]
Length = 374
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 79/359 (22%), Positives = 155/359 (43%), Gaps = 50/359 (13%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 42 DQEYAQTQLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSKVVQGVYDRVLTITG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G E+ +A V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 102 --GCEA----ISRAYAAVARSLLEGAPTMGMGGVIQNNGTHPIKLLISHNQMGTIIGRQG 155
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 156 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAVWEICKCLVDDW---- 208
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHD---FSQPPLTQGMDHLGLSHS 414
R T +VL +P R + + G+ D + +T+ + S+
Sbjct: 209 -----QRGTGTVL--YNPVVRTQGVGAPGISGGSGYVQDRAPYGGSRVTRTGNGADFSN- 260
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII 474
P+ + ++ + RG +H + G E+ T I
Sbjct: 261 ----GGPRSYNRRSDSDPSNRGPP----------THDENGEEI-----------QTQNIS 295
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT + A LL
Sbjct: 296 IPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTSKANETALFLL 354
>gi|413933967|gb|AFW68518.1| hypothetical protein ZEAMMB73_983755, partial [Zea mays]
Length = 131
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 454 GLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
GLE G SA ++T+E+ +P + + S+ G G NL +RQISGA++ +HE GS++
Sbjct: 28 GLEDYRGLPSASGFSSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSE 87
Query: 514 RIVVISGTPDETQAAQSLLQAFI 536
+V I GT D+ +AAQSLL+ FI
Sbjct: 88 SVVEIQGTLDQAKAAQSLLEGFI 110
>gi|451997944|gb|EMD90409.1| hypothetical protein COCHEDRAFT_1225891 [Cochliobolus
heterostrophus C5]
Length = 365
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 159/369 (43%), Gaps = 48/369 (13%)
Query: 167 LSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP 226
+ E + V + + +++ R + S+ + G +IGK G + L+ E G V +
Sbjct: 26 MDGEGEVVPRTEEEYAEAQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKVVQ 85
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
+R+++VT S S KA L L+EG G+ RL+++
Sbjct: 86 GVHDRVLSVTGS------LSGISKAYGLAAKGLLEGAPAMGMGGVIRTDGTHPIRLLISH 139
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G + ++ AV+ +
Sbjct: 140 NQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGSPAGIEKAVWEIG 196
Query: 347 GRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPP--LTQ 404
L D+H R +VL +P R++ G ++ S P +
Sbjct: 197 KCLIDDH---------ERGYGTVL--YNPAVRVQPGVGPG-----PAANGGSAPAGGMGG 240
Query: 405 GMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA 464
G + H D SP ++ ++ GS R +H + G E+
Sbjct: 241 GRSYNRTGHGADFSDSPPAFSRRS-------GSDAASR--PPPPTHTEDGEEM------- 284
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPD 523
T I +P +++G + G GS + +R+ S A++ I P + +R+ I+G+
Sbjct: 285 ----QTQNISIPSDMVGCIIGRGGSKISEIRKTSNARISIAKAPHDDTGERMFTITGSAS 340
Query: 524 ETQAAQSLL 532
+ A LL
Sbjct: 341 ANEKALYLL 349
>gi|115471839|ref|NP_001059518.1| Os07g0439100 [Oryza sativa Japonica Group]
gi|38175703|dbj|BAC84296.2| unknown protein [Oryza sativa Japonica Group]
gi|50508539|dbj|BAD30838.1| unknown protein [Oryza sativa Japonica Group]
gi|113611054|dbj|BAF21432.1| Os07g0439100 [Oryza sativa Japonica Group]
Length = 233
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 117/247 (47%), Gaps = 25/247 (10%)
Query: 303 MRKVTGTSIRIISDQLL-KCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT- 360
M T T ++I+ + + C S+ + V+QI+GE V+DA+ V +LR++ FS T
Sbjct: 1 MNNTTRTKMKILEETAVPACASQYELVLQITGEPMNVRDALSLVCEKLRNHCFSSEKTTY 60
Query: 361 ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV-------SHDFSQPPLTQGMDHLGLSH 413
SS + E + S+ + + V +S++ S +P + G + +
Sbjct: 61 GNGHVPSSAIDELTTSSQNEIDS---VQNSISAFDLGCLGSPQIQKPTIGCGTEINNPIN 117
Query: 414 SLDCPSSPKLWTAQTV-TGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVE 472
++ P++ + TG+ DV + L K L G K+A +T T E
Sbjct: 118 EVEKPANGNGTGINNLNTGMQNENGIDVSNHGATSLEEKK----LLRGIKTATITRITYE 173
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ +V G+NG++ +R++SGA V H P ++D ++VISGTPDE Q+A ++
Sbjct: 174 V--------AVCGDNGNDFTMIREMSGADVTAHYPLPETSDGMIVISGTPDEAQSALAMF 225
Query: 533 QAFILTG 539
+ G
Sbjct: 226 LDLVKEG 232
>gi|121710626|ref|XP_001272929.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
gi|119401079|gb|EAW11503.1| KH domain RNA-binding protein [Aspergillus clavatus NRRL 1]
Length = 362
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 105/228 (46%), Gaps = 24/228 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 41 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 96
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+A LV L+EG + G+ N RL+++ NQ+G ++G+ G I
Sbjct: 97 --LQGTARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKH 154
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT----L 358
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 155 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTILY 211
Query: 359 NTA-----------RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH 395
N A T +T+S + PY+R + A F S S
Sbjct: 212 NPAVRASVGTGSSINTNTTASNGYNSRPYNRTGNGADFSDGQSAGYSR 259
>gi|380792087|gb|AFE67919.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 193
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG +++ D L + +R + I+G + + V + + ++ G R +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKP 182
Query: 366 TSS 368
+SS
Sbjct: 183 SSS 185
>gi|355709446|gb|AES03594.1| Poly rC-binding protein 1 [Mustela putorius furo]
Length = 209
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+T GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEG--NCPERIITLT---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E + + ++ V RLVV + Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R + I+G V + V +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGVPQSVTECVKQI 162
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 14/181 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I++++ +GA I++ C ER++T+T +
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDG--SCPERIVTITGN------V 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ ++ E + L S K + RL+V + Q G L+GKGG+ I E+R+
Sbjct: 75 DTINKAFSMICNKFQEDM--QALPNSVPKPP-ITMRLIVPATQCGSLIGKGGSKIKEIRE 131
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L S +R V ISG + + ++ L + GT R +
Sbjct: 132 ATGASIQVASEMLP---SSTERAVTISGSADAIVLCMQHICHILLEAPPKGTTLPYRPKP 188
Query: 366 T 366
T
Sbjct: 189 T 189
>gi|147903491|ref|NP_001091320.1| poly(rC) binding protein 1 [Xenopus laevis]
gi|124481736|gb|AAI33216.1| LOC100037147 protein [Xenopus laevis]
Length = 221
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTDAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ + E + ++ V RLVV ++Q G L+GKGG+ I E+R+
Sbjct: 69 F---KAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG+ +++ D L + +R V ISG
Sbjct: 126 STGSQVQVAGDMLP---NSTERAVTISG 150
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +G++V V L ST+R V ISGTPD
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGSQVQVAGDMLPNSTERAVTISGTPD 153
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 59 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGS 118
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ G+ + V G +P ER +T++ +
Sbjct: 119 KIKEIRESTGSQVQVAGDMLPNSTERAVTISGT 151
>gi|261195190|ref|XP_002623999.1| KH domain RNA binding protein [Ajellomyces dermatitidis SLH14081]
gi|239587871|gb|EEQ70514.1| KH domain RNA binding protein [Ajellomyces dermatitidis SLH14081]
gi|239610640|gb|EEQ87627.1| KH domain RNA binding protein [Ajellomyces dermatitidis ER-3]
gi|327348926|gb|EGE77783.1| KH domain RNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 496
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 154/380 (40%), Gaps = 65/380 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 138 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 189
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 190 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 247
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 248 EASGARLNA-SDSCLPLSTE--RTLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 304
Query: 362 R-TRSTSSVLT-----ETSPY------SRLKDPASFGVHSSVA-------------VSHD 396
TRS + PY + P +F H A V
Sbjct: 305 YATRSGGPAGVVPGGMQVVPYIPQPAGGQYGHPDTFKRHQPQANRAVSTGGYGVPYVHGQ 364
Query: 397 FSQPPLTQGMDHLGLS----HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
QP + H G S ++ P P + A T VH +
Sbjct: 365 PGQPQMPHQALHYGSSSRPGYTGAGPHQPAPYGAPQPTQVH-----------GAPTAQPA 413
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG+ G+ T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S
Sbjct: 414 GGVVPGA--------PVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSN 465
Query: 513 DRIVVISGTPDETQAAQSLL 532
+R+V I+GTP+ Q A +L
Sbjct: 466 ERLVTITGTPECNQMALYML 485
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + PE
Sbjct: 422 VTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGT--PECN- 478
Query: 246 SPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 479 ---QMALYMLYSRL 489
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G V ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 419 GAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 474
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 475 PECNQMALYMLYSRL 489
>gi|429859891|gb|ELA34647.1| kh domain rna binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 471
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 87/362 (24%), Positives = 146/362 (40%), Gaps = 30/362 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 114 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGV------V 167
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A KA L+ L +E + SS + RL++ +G ++GKGG I E+++
Sbjct: 168 DAAAKAFGLIIRTL---NNEPLAEPSSAQSKTYPLRLLIPHILIGSIIGKGGARIREIQE 224
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNHFSGTLNTAR 362
+G + SD L +E VV G V A Y V L ++ F G +A
Sbjct: 225 ASGARLNA-SDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNDRFGGPAASAY 281
Query: 363 -TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQ----PPLTQGMDHLGLS 412
TRS + PY ++G + HD P + G
Sbjct: 282 ATRSGGPAGVVPGGMQVVPYCPQPTTGNYGNRENYNRRHDARAQHHLPAAPYAQPYPGHH 341
Query: 413 HSLDCPSSP--KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
+ P+ P G G Q H G A +T
Sbjct: 342 AAQPNPAMPIHYGAAQAGGYGAAAPMQPHAGAAVPQPHGAHPAQPMHGGAMPGAPLTQ-- 399
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQS 530
+I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT + + A
Sbjct: 400 -QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMALY 458
Query: 531 LL 532
+L
Sbjct: 459 ML 460
>gi|349576607|dbj|GAA21778.1| K7_Pbp2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 413
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 166/396 (41%), Gaps = 68/396 (17%)
Query: 167 LSLESDRVATLDARTQQQ-----------EVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
L E RVA DA + +V R+LC ++G G I ++SE
Sbjct: 37 LEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSET 96
Query: 216 GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE--GTSEKGLDFSSN 273
A I++ + ER++ V + KA ++ L+E G + G D +
Sbjct: 97 SARINISNNIRGVPERIVYVRGT------CDDVAKAYGMIVRALLEEHGNEDNGEDIEIS 150
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
LL+ L +GC++GK G+ + E+ ++ + +QLL NDR++ I+G
Sbjct: 151 INLLIPHHL------MGCIIGKRGSRLREIEDLSAAKLFASPNQLLLS---NDRILTING 201
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
V DA++ T + S TL + S + + Y P F +SV +
Sbjct: 202 ----VPDAIHIATF-----YISQTLLNFQMESPQKNVKRSIYYQ----PTQF---NSVLI 245
Query: 394 SHDFSQP------------PLTQGMDH-----LGLSHSLDCPSSPKLWTAQTVTGVHLRG 436
H SQP P + + + L +S +L ++P+ TA +
Sbjct: 246 DH--SQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTASVANATAFQP 303
Query: 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
+ + ++ G + + ++ EI + E +G+V G++G ++ +++
Sbjct: 304 NFVI-----PNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKE 358
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+G +I+ +P GS++R + I GT +QAA L+
Sbjct: 359 STGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 432 VHLRGS-SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
V++RG+ DV + + + + LE + ++ +++P +++G + G+ GS
Sbjct: 114 VYVRGTCDDVAKAYGMIV---RALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSR 170
Query: 491 LLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDETQAA-----QSLLQAFILTGP 540
L + +S AK+ +L S DRI+ I+G PD A Q+LL F + P
Sbjct: 171 LREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLN-FQMESP 225
>gi|325093144|gb|EGC46454.1| KH domain RNA binding protein [Ajellomyces capsulatus H88]
Length = 499
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 158/374 (42%), Gaps = 41/374 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 137 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 188
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 189 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 246
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 247 EASGARLNA-SDSCLPLSTE--RTLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 303
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQ--GMDHLGLSH 413
TRS + + PY +G H H QPP + G+ +
Sbjct: 304 YATRSGGAAGVVPGGMQVVPYVPQPAGGQYG-HPDTFKRH---QPPGNRVVSTGGYGVPY 359
Query: 414 SLDCPSSPKLWTAQTVTGVHLR-GSSDVG------RGWSQGLSHHKGGLELGSGSKSAIV 466
P P++ G R G S G G Q H G +G +V
Sbjct: 360 VHGQPGQPQMPHQALHYGSSSRPGYSGAGPHQPAPYGAPQPAPVHGGPSAQPAG---GVV 416
Query: 467 TNTTV--EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
V +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GTP+
Sbjct: 417 PGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTPEC 476
Query: 525 TQAAQSLLQAFILT 538
Q A +L + + T
Sbjct: 477 NQMALYMLYSRLGT 490
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 115/247 (46%), Gaps = 35/247 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + ++GA I++ C ER++TVT S
Sbjct: 12 LTVRMIMQGKEVGSIIGKKGDNIKKFREDSGAKINISDGT--CPERIVTVTGS------T 63
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSS---NKGLL-------VNARLVVASNQVGCLLGK 295
KA L+ ++ E +S G S + +L V RL+V ++Q G L+GK
Sbjct: 64 ECILKAFSLICAKFEEMSSLSGSPTESALNGQKVLPGQTPPPVTLRLIVPASQCGSLIGK 123
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
G+ I E+R++TG S+++ S+ L + +R V ++G V +Y + + +
Sbjct: 124 AGSKIREIREITGASVQVASEMLP---NSTERTVTVAGTADAVTKCIYQICCVMLECPPK 180
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS- 414
G R + P ++ V S A+ H P LT+ + L L H+
Sbjct: 181 GATIPYRPK-------PAMPPVIFAGGQAYTVQGSYAIPH----PDLTK-LHQLALQHAP 228
Query: 415 -LDCPSS 420
L+ P+S
Sbjct: 229 LLNPPTS 235
>gi|302414660|ref|XP_003005162.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
gi|261356231|gb|EEY18659.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
Length = 478
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 147/359 (40%), Gaps = 34/359 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 115 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSG-------- 166
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A F +I + + LD SS + RL++ +G ++GKGG I E++
Sbjct: 167 --VVDASAKAFGLIIRTLNNEPLDEPSSAQSKTYPLRLLIPHILIGSIIGKGGARIREIQ 224
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNHFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L ++ F G +A
Sbjct: 225 EASGARLNA-SDSCLPMSTERSLVVM--GVADAVHIATYYVGSTLLEQLNDRFGGPAASA 281
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHD--------FSQPPLTQGMD 407
TRS + PY ++G + HD PP G
Sbjct: 282 YATRSGGPAGVVPGGMQVVPYCPQPTTGNYGNRENFGRRHDARGQHPQQHHMPPAPYGQQ 341
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG-GLELGSGSKSAIV 466
+ + P+ P+ + AQ G Q H + G +
Sbjct: 342 YPPHG-AQPGPAIPQQYGAQAGGYGGAPMQPHGGPAAPQPHGGHPAQPMHGGPAAGGMAG 400
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT DET
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGT-DET 458
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E+
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTD--ET 458
Query: 244 RYSPAQKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 459 N----RMALYMLYSRL 470
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G +
Sbjct: 406 QIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGTDETNRM 461
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 462 ALYMLYSRL 470
>gi|398365639|ref|NP_009792.3| Pbp2p [Saccharomyces cerevisiae S288c]
gi|586350|sp|P38151.1|PBP2_YEAST RecName: Full=PAB1-binding protein 2
gi|536633|emb|CAA85196.1| unnamed protein product [Saccharomyces cerevisiae]
gi|151946618|gb|EDN64840.1| pbp1p binding protein [Saccharomyces cerevisiae YJM789]
gi|190408618|gb|EDV11883.1| PAB1-binding protein 2 [Saccharomyces cerevisiae RM11-1a]
gi|207347516|gb|EDZ73659.1| YBR233Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256272922|gb|EEU07890.1| Pbp2p [Saccharomyces cerevisiae JAY291]
gi|285810563|tpg|DAA07348.1| TPA: Pbp2p [Saccharomyces cerevisiae S288c]
gi|323310022|gb|EGA63217.1| Pbp2p [Saccharomyces cerevisiae FostersO]
gi|323334658|gb|EGA76032.1| Pbp2p [Saccharomyces cerevisiae AWRI796]
gi|323338741|gb|EGA79957.1| Pbp2p [Saccharomyces cerevisiae Vin13]
gi|323349811|gb|EGA84026.1| Pbp2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323356159|gb|EGA87964.1| Pbp2p [Saccharomyces cerevisiae VL3]
gi|392301080|gb|EIW12169.1| Pbp2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 413
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 166/396 (41%), Gaps = 68/396 (17%)
Query: 167 LSLESDRVATLDARTQQQ-----------EVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
L E RVA DA + +V R+LC ++G G I ++SE
Sbjct: 37 LEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSET 96
Query: 216 GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE--GTSEKGLDFSSN 273
A I++ + ER++ V + KA ++ L+E G + G D +
Sbjct: 97 SARINISNNIRGVPERIVYVRGT------CDDVAKAYGMIVRALLEEHGNEDNGEDIEIS 150
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
LL+ L +GC++GK G+ + E+ ++ + +QLL NDR++ I+G
Sbjct: 151 INLLIPHHL------MGCIIGKRGSRLREIEDLSAAKLFASPNQLLLS---NDRILTING 201
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
V DA++ T + S TL + S + + Y P F +SV +
Sbjct: 202 ----VPDAIHIATF-----YISQTLLNFQMESPQKNVKRSIYYQ----PTQF---NSVLI 245
Query: 394 SHDFSQP------------PLTQGMDH-----LGLSHSLDCPSSPKLWTAQTVTGVHLRG 436
H SQP P + + + L +S +L ++P+ TA +
Sbjct: 246 DH--SQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTASVANATAFQP 303
Query: 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
+ + ++ G + + ++ EI + E +G+V G++G ++ +++
Sbjct: 304 NFVI-----PNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKE 358
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+G +I+ +P GS++R + I GT +QAA L+
Sbjct: 359 STGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 432 VHLRGS-SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
V++RG+ DV + + + + LE + ++ +++P +++G + G+ GS
Sbjct: 114 VYVRGTCDDVAKAYGMIV---RALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSR 170
Query: 491 LLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDETQAA-----QSLLQAFILTGP 540
L + +S AK+ +L S DRI+ I+G PD A Q+LL F + P
Sbjct: 171 LREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLN-FQMESP 225
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G I+ + E+GA I++ + C ER++TV+ + + +
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SDGSCPERIVTVSGTT--NAIF 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
S A L+ + E S+ D + RL+V ++Q G L+GK G+ I E+R+
Sbjct: 80 S----AFTLITKKFEEWCSQFN-DVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQ 134
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG SI++ S+ L + +R V +SG ++ +Y +
Sbjct: 135 TTGCSIQVASEMLP---NSTERAVTLSGSAEQITQCIYQI 171
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAA 528
E+ V ++IG + G+ G+ + +RQISGA + + E G+TDR + ISG PD A
Sbjct: 293 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 352
Query: 529 QSLLQAFI 536
Q L+ I
Sbjct: 353 QYLINMRI 360
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V+++ +GC++GKGGT I+E+R+++G IR IS+ + DR + ISG V A
Sbjct: 294 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGNTDRTITISGNPDSVALA 352
Query: 342 VYNVTGRL 349
Y + R+
Sbjct: 353 QYLINMRI 360
Score = 39.3 bits (90), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
R A R QQQ+ + SND +G +IGKGGT I ++ +GA I + C+ER
Sbjct: 279 RTANPANRAQQQQHEMTV--SNDLIGCIIGKGGTKIAEIRQISGAMIRIS----NCEERE 332
Query: 233 -----ITVTASEGPES 243
T+T S P+S
Sbjct: 333 GGNTDRTITISGNPDS 348
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 14/181 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I++++ +GA I++ C ER++T+T +
Sbjct: 23 LTIRLLMQGKEVGSIIGKRGDHIKSIRDGSGAKINISDG--SCPERIVTITGN------V 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ ++ E + L S K + RL+V + Q G L+GKGG+ I E+R+
Sbjct: 75 DTINKAFSMICNKFQE--DMQALPNSVPKPP-ITMRLIVPATQCGSLIGKGGSKIKEIRE 131
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L S +R V ISG + + ++ L + GT R +
Sbjct: 132 ATGASIQVASEMLP---SSTERAVTISGSADAIVLCMQHICHILLEAPPKGTTLPYRPKP 188
Query: 366 T 366
T
Sbjct: 189 T 189
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ +IVP GS+ G+ GS + +R+ +GA + V L ST+R V ISG+ D
Sbjct: 105 TMRLIVPATQCGSLIGKGGSKIKEIREATGASIQVASEMLPSSTERAVTISGSAD 159
>gi|328724001|ref|XP_001949471.2| PREDICTED: poly(rC)-binding protein 3-like [Acyrthosiphon pisum]
Length = 443
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 152/358 (42%), Gaps = 65/358 (18%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+++ RIL +V VIGKGG S A IS G T E ++++T +
Sbjct: 27 KLTMRILIDRREVRNVIGKGGE-----SSGAKVLISGGQTR----ESIVSITGTTN---- 73
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ + LI E+ + + + +L+V +Q G ++GKGG I E+R
Sbjct: 74 -------AICKATELIGLKVEEFFERQNGPKAFLTLKLIVPISQCGFIIGKGGCKIKEIR 126
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ +G +I++ D L + +R+V I+G + VY V + LN+ +
Sbjct: 127 ESSGAAIQVALDMLP---NSTERLVSITGTTGTISQCVYQVCNVI--------LNSPSRK 175
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP---PLTQGMDHLGLSHSLDCPSSP 421
+ T PY + F +S AV DF + PL + LGL +P
Sbjct: 176 A-------TIPYDPRRKTLGF---ASSAVGTDFGRQCINPLAS-LAALGLGTVSTGSINP 224
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
A + G LR + R G HK ++++ + T+ + VP +IG
Sbjct: 225 ATLAA--LAGSQLRTGNRQNR---NGGGEHK--------NQNSNSNSETISMTVPNVLIG 271
Query: 482 SVYGENGSNLLRLRQISGAKVIV------HEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
V G GS + ++Q+SGA V + HE + DR + I+G D A+ L++
Sbjct: 272 CVIGRRGSKIAEIKQLSGALVYIAKGERTHE-NGENEDRQITITGNKDSISVAKYLIE 328
>gi|225563195|gb|EEH11474.1| KH domain RNA binding protein [Ajellomyces capsulatus G186AR]
gi|240275775|gb|EER39288.1| KH domain RNA-binding protein [Ajellomyces capsulatus H143]
Length = 495
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 41/368 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 137 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 188
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 189 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 246
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 247 EASGARLNA-SDSCLPLSTE--RTLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 303
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQ--GMDHLGLSH 413
TRS + + PY +G H H QPP + G+ +
Sbjct: 304 YATRSGGAAGVVPGGMQVVPYVPQPAGGQYG-HPDTFKRH---QPPGNRVVSTGGYGVPY 359
Query: 414 SLDCPSSPKLWTAQTVTGVHLR-GSSDVG------RGWSQGLSHHKGGLELGSGSKSAIV 466
P P++ G R G S G G Q H G +G +V
Sbjct: 360 VHGQPGQPQMPHQALHYGSSSRPGYSGAGPHQPAPYGAPQPAPVHGGPSAQPAG---GVV 416
Query: 467 TNTTV--EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
V +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GTP+
Sbjct: 417 PGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTPEC 476
Query: 525 TQAAQSLL 532
Q A +L
Sbjct: 477 NQMALYML 484
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + PE
Sbjct: 421 VTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGT--PECN- 477
Query: 246 SPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 478 ---QMALYMLYSRL 488
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G V ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 418 GAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 473
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 474 PECNQMALYMLYSRL 488
>gi|290878251|emb|CBK39310.1| Pbp2p [Saccharomyces cerevisiae EC1118]
Length = 413
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 90/396 (22%), Positives = 166/396 (41%), Gaps = 68/396 (17%)
Query: 167 LSLESDRVATLDARTQ-----------QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
L E RVA DA + +V R+LC ++G G I ++SE
Sbjct: 37 LEAEIKRVALKDADSHFDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSET 96
Query: 216 GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE--GTSEKGLDFSSN 273
A I++ + ER++ V + KA ++ L+E G + G D +
Sbjct: 97 SARINISNNIRGVPERIVYVRGT------CDDVAKAYGMIVRALLEEHGNEDNGEDIEIS 150
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
LL+ L +GC++GK G+ + E+ ++ + +QLL NDR++ I+G
Sbjct: 151 INLLIPHHL------MGCIIGKRGSRLREIEDLSAAKLFASPNQLLLS---NDRILTING 201
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
V DA++ T + S TL + S + + Y P F +SV +
Sbjct: 202 ----VPDAIHIATF-----YISQTLLNFQMESPQKNVKRSIYYQ----PTQF---NSVLI 245
Query: 394 SHDFSQP------------PLTQGMDH-----LGLSHSLDCPSSPKLWTAQTVTGVHLRG 436
H SQP P + + + L +S +L ++P+ TA +
Sbjct: 246 DH--SQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTLLSMATPQYTTASVANATAFQP 303
Query: 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
+ + ++ G + + ++ EI + E +G+V G++G ++ +++
Sbjct: 304 NFVI-----PNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKE 358
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+G +I+ +P GS++R + I GT +QAA L+
Sbjct: 359 STGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 432 VHLRGS-SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
V++RG+ DV + + + + LE + ++ +++P +++G + G+ GS
Sbjct: 114 VYVRGTCDDVAKAYGMIV---RALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSR 170
Query: 491 LLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDETQAAQSLLQAFILT 538
L + +S AK+ +L S DRI+ I+G PD A + +L
Sbjct: 171 LREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLN 219
>gi|218184511|gb|EEC66938.1| hypothetical protein OsI_33565 [Oryza sativa Indica Group]
Length = 800
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
FR+L KVGAVIG G +R L E A + V ER + + A E P+ P
Sbjct: 242 FRMLIPATKVGAVIGHSGERLRRLCEETKACVRVIGGHFAAAERAVIIFAKEQPDEPKPP 301
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
A A++ V+ I ++ GLD N +V AR++ S Q L+G G++I+ ++K +
Sbjct: 302 AIDALLRVYECTI---NDDGLDVRYNN--IVVARILTPSEQAASLIGDQGSVINYIKKAS 356
Query: 308 GTSIRIISDQL 318
T+I +I + L
Sbjct: 357 KTNIHVIGNFL 367
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 17/153 (11%)
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
+VG++IGK G I++ + E+GA I++ + C ER++TVT + S KA L+
Sbjct: 5 EVGSIIGKKGEIVKRFREESGAKINI--SDGSCPERIVTVTGNT------SSIFKAFTLI 56
Query: 256 FSRLIEGTSEKGLDFSSNKG---LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
+ E S+ F+ G + RL+V ++Q G L+GKGG+ I E+R VTG
Sbjct: 57 CKKFEEWCSQ----FNEGGGGSRAPITLRLIVPASQCGSLIGKGGSKIKEIRDVTGRLYV 112
Query: 313 IISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
++ ++L + +R V ISG + +Y++
Sbjct: 113 HVASEMLP--NSTERAVTISGTCDAITQCIYHI 143
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDETQAA 528
E+ VP +IG + G+ G+ + +RQISGA + + E GSTDR + ISG PD A
Sbjct: 281 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGSTDRTITISGNPDSVALA 340
Query: 529 QSLLQ 533
Q L+
Sbjct: 341 QYLIN 345
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + ISG V A
Sbjct: 282 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGSTDRTITISGNPDSVALA 340
Query: 342 VY--NVTGRLRDNHFSG 356
Y N++ L+ + G
Sbjct: 341 QYLINMSVELQKANLEG 357
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 456 ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH---EPRLGST 512
E G GS++ I T+ +IVP + GS+ G+ GS + +R ++G ++ VH E ST
Sbjct: 69 EGGGGSRAPI----TLRLIVPASQCGSLIGKGGSKIKEIRDVTG-RLYVHVASEMLPNST 123
Query: 513 DRIVVISGTPD 523
+R V ISGT D
Sbjct: 124 ERAVTISGTCD 134
>gi|406866101|gb|EKD19141.1| KH domain RNA-binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 372
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 83/367 (22%), Positives = 158/367 (43%), Gaps = 65/367 (17%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + +++ R + S+ + G +IGK G + L+ E GA V + +R++T+
Sbjct: 41 DEEYGESQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGAKAGVSKVVQGVHDRVLTIAG 100
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G E+ KA +V L+EG + G+ + +L+++ NQ+G ++G+ G
Sbjct: 101 --GCEA----ISKAYAIVARALLEGAPQMGMGGVVSTSGTHPIKLLISHNQMGTIIGRQG 154
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V+I G ++ A++ + L D+ GT
Sbjct: 155 LKIKHIQDASG--VRMVAQKEMLPQS-TERIVEIQGTPEGIQKAIWEICKCLIDDWQRGT 211
Query: 358 LN-----TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV-----SHDFSQPPLTQGMD 407
RT+ +D +SS V +DFS+
Sbjct: 212 GTVLYNPVVRTQPGGGPGMGQGGGGNGRD----NYNSSPRVMRTGNGNDFSE-------- 259
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIV 466
++P+ + ++ R +SD G RG +H + G E
Sbjct: 260 -----------NAPRTYNSR-------RSNSDAGQRGPP---THDENGEEY--------- 289
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDET 525
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I GT
Sbjct: 290 --QTQNISIPSDMVGCIIGRAGSKISEIRKSSGARISIAKAPHDDTGERMFTIMGTTKAN 347
Query: 526 QAAQSLL 532
+AA LL
Sbjct: 348 EAALYLL 354
>gi|410897014|ref|XP_003961994.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Takifugu rubripes]
Length = 607
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 15/155 (9%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
Q+QEV++ + VGA+IGK G I+ L AGA I V A MP+ ER++ +T +
Sbjct: 431 QEQEVAY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKVAPAEMPDATERMVIITGT-- 487
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + + V S G ++GKGG +
Sbjct: 488 PEAQF----KAQGRIFGKLKEENI-----FTGKEEVRLETHIKVPSTAAGRVIGKGGKTV 538
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
+E++ +T + + DQ +N+ VV+I G F
Sbjct: 539 NELQSLTSAEVIVPRDQTPD--EKNEVVVKICGHF 571
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 87/378 (23%), Positives = 157/378 (41%), Gaps = 78/378 (20%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERLI 233
RT QQ+ RI+ VGA+IGK G I+ + + + + + GA E+ I
Sbjct: 193 RTTQQD--LRIIVPTQYVGAIIGKEGLTIKNVTKQTQSKVDIHRKENAGAA-----EKPI 245
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
T+ ++ PE S A + ++ + + E K ++ + +++ ++N +G L+
Sbjct: 246 TIHST--PEG-CSAACRMIMEIMQK--EANETKAMED-------IPLKIIASNNYIGRLI 293
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
GK G + ++ + TGT I I S Q L I N+R + + G +A + +LR+
Sbjct: 294 GKQGRNLKKIEEETGTKITISSLQDLN-IYNNERTITVKGSLEACCNAEVEIMKKLRE-- 350
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV------AVSHDFSQPPLTQGMD 407
A +++ +TS L + + G+ SS A + PP+
Sbjct: 351 -------AYENDIAAINQQTSLIPGL-NLNALGIFSSTLPVLSPAAGPRSTMPPVGPAGY 402
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+ L HS HL SS G + + H E
Sbjct: 403 NPFLGHS-----------------SHL--SSLYGVPPASAIPHQHAAQE----------- 432
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQ 526
+ +P +G++ G+ G ++ +L +GA + V + +T+R+V+I+GTP+
Sbjct: 433 QEVAYLFIPTQAVGALIGKKGQHIKQLAHFAGASIKVAPAEMPDATERMVIITGTPEAQF 492
Query: 527 AAQ-----SLLQAFILTG 539
AQ L + I TG
Sbjct: 493 KAQGRIFGKLKEENIFTG 510
>gi|115442854|ref|XP_001218234.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
gi|114188103|gb|EAU29803.1| hypothetical protein ATEG_09612 [Aspergillus terreus NIH2624]
Length = 355
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 39 QSMLTLRAIVSSKEAGIIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 94
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 95 --LHGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 151
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT---- 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 152 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTIL 208
Query: 358 LNTARTRSTSSVLTETS--------PYSRLKDPASF----GVHSSVAVSHDFSQPPL 402
N A S S T T+ PY+R + A F G +SS + D + P+
Sbjct: 209 YNPAVRASVGSGSTNTNMGNGYGSRPYNRTGNGADFSDQSGGYSSRRSNSDAGRFPM 265
>gi|389630232|ref|XP_003712769.1| hypothetical protein MGG_16887 [Magnaporthe oryzae 70-15]
gi|351645101|gb|EHA52962.1| hypothetical protein MGG_16887 [Magnaporthe oryzae 70-15]
gi|440469705|gb|ELQ38806.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae Y34]
gi|440482607|gb|ELQ63080.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae P131]
Length = 370
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 160/364 (43%), Gaps = 58/364 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 38 DEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 97
Query: 238 S-EGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGK 295
EG KA +V L+EG G+ SN G +L+++ NQ+G ++G+
Sbjct: 98 GCEG-------ISKAYAVVARALLEGAPSMGMGGVVSNNGTHP-IKLLISHNQMGTIIGR 149
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
G I ++ V+G +R+++ + + S +RVV++ G ++ AV+ + L D+
Sbjct: 150 QGLKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIQRAVWEICKCLIDDW-- 204
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPA------SFGVHSSVAVSHDFSQPPLTQGMDHL 409
R T +VL +P R + PA S G + D+S +T+ +
Sbjct: 205 -------QRGTGTVL--YNPVVRTQ-PAGATQMGSSGAGYGTSNRGDYSSSRVTRTGNGA 254
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
S+ + + ++ + RG +H + G E+
Sbjct: 255 DFSN-----GGGRSYNRRSDSDAANRGPP----------THDENGEEI-----------Q 288
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAA 528
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+ + A
Sbjct: 289 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETA 348
Query: 529 QSLL 532
LL
Sbjct: 349 LFLL 352
>gi|156102214|ref|XP_001616800.1| RNA-binding protein Nova-1 [Plasmodium vivax Sal-1]
gi|148805674|gb|EDL47073.1| RNA-binding protein Nova-1, putative [Plasmodium vivax]
Length = 335
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/355 (24%), Positives = 150/355 (42%), Gaps = 71/355 (20%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
++L +N G+VIGK G+II +++++ G + + T P ER++ + +
Sbjct: 21 KMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQ------ 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A++++ ++ + T++ D + N R+VV + V ++GKGG I +++
Sbjct: 75 EQINNALLIILDKIRQITTQNFQDKQNMNTSPKYTCRIVVPKSAVSAIIGKGGQQIKQLQ 134
Query: 305 KVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DNHFSGTLNTA 361
TG I+I S D L N+R++ I G F + D VT ++ D + LN
Sbjct: 135 DTTGAKIQISSREDGL------NERIISIIGPFESISDTAIKVTNSIQNDPNLKDLLNVI 188
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPLTQGMDHLGLSHSLDCPSS 420
YS KD G S +S +F +Q PL + P
Sbjct: 189 --------------YS--KDANMNGRSS---LSQNFVNQVPL----------NGYVVPQQ 219
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
++ + V++ S L H S+ + I +P+ I
Sbjct: 220 YGVFQHEQYMDVNMMNS----------LMRH---------SRDLFNLPCEISIQIPDEFI 260
Query: 481 GSVYGENGSNLLRLRQISGAKV-IVHEPRL--GSTDRIVVISGTPDETQAAQSLL 532
GSV G+NG+ L + +GA++ I + L G+ DR V I GT AA LL
Sbjct: 261 GSVIGKNGARLTNIMNSTGAQIRISRKGELVPGTADRKVRIMGTVAAVHAAHVLL 315
>gi|452989355|gb|EME89110.1| hypothetical protein MYCFIDRAFT_71441 [Pseudocercospora fijiensis
CIRAD86]
Length = 360
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/372 (23%), Positives = 158/372 (42%), Gaps = 60/372 (16%)
Query: 168 SLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
L +D + Q +++ R + ++ + G +IGK G + L+ + G V +P
Sbjct: 23 GLSTDERPRTEEEYAQSQLTLRAIVTSKEAGVIIGKAGQNVADLRDKTGVRAGVSKVVPG 82
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-----RL 282
+R++TVT + + A LV L++G + G+ G++ N RL
Sbjct: 83 VHDRVLTVTGA------LTGISDAYGLVADSLVKGVPQMGMG-----GVVGNPNTHPIRL 131
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+++ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G V+ AV
Sbjct: 132 LISHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGVQKAV 188
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
+ + L D+ R +VL YS PA V V PPL
Sbjct: 189 WEIGKCLIDDE---------QRGYGTVL-----YS----PA-------VRVQGGAPAPPL 223
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
G S P S +T G G G+ S G + G +
Sbjct: 224 N------GTGASYGAPRS----YNRTGNGADFTG----GQSPSSYPPRRNGPSDGGPPPR 269
Query: 463 SAIVTN-TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISG 520
+ T I +P +++G + G GS + +R+ SGA++ I P + +R+ I+G
Sbjct: 270 PEDGEDIQTQNISIPADMVGCIIGRGGSKISEIRKSSGARISIAKAPHDETGERMFTITG 329
Query: 521 TPDETQAAQSLL 532
P + A LL
Sbjct: 330 GPAANEKALYLL 341
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 19/152 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER++T+T GP
Sbjct: 56 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEG--NCPERIVTIT---GPTD-- 108
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A+ F+ + E ++ SN V RLVV ++Q G L+GKGG+ I
Sbjct: 109 -----AIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIK 163
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
E+R+ TG +++ D L + +R V ISG
Sbjct: 164 EIRESTGAQVQVAGDMLP---NSTERAVTISG 192
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 101 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 160
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS--------------------EGPESRY 245
I+ ++ GA + V G +P ER +T++ + +G Y
Sbjct: 161 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPY 220
Query: 246 SPAQKAVVLVF----SRLIEGTSE----------KGLDFSSNKGLLVNA---RLVVASNQ 288
P + ++F + I+G L FSS A L + ++
Sbjct: 221 RPKPASTPVIFAGGQAYTIQGQYAIPHPDVSFHFVCLPFSSCLDASPPASTHELTIPNDL 280
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
+GC++G+ GT I+E+R+++G I+I + ++R + I+G + + A Y + R
Sbjct: 281 IGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQITITGTPANISLAQYLINAR 336
Query: 349 L 349
L
Sbjct: 337 L 337
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 41/66 (62%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T E+ +P ++IG + G G+ + +RQ+SGA++ + GS++R + I+GTP A
Sbjct: 270 STHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLA 329
Query: 529 QSLLQA 534
Q L+ A
Sbjct: 330 QYLINA 335
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 141 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 195
>gi|346979418|gb|EGY22870.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 477
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 147/359 (40%), Gaps = 34/359 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 115 IHIRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSG-------- 166
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A F +I + + LD SS + RL++ +G ++GKGG I E++
Sbjct: 167 --VVDASAKAFGLIIRTLNNEPLDEPSSAQSKTYPLRLLIPHILIGSIIGKGGARIREIQ 224
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNHFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L ++ F G +A
Sbjct: 225 EASGARLNA-SDSCLPMSTERSLVVM--GVADAVHIATYYVGSTLLEQLNDRFGGPAASA 281
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHD--------FSQPPLTQGMD 407
TRS + PY ++G + HD PP G
Sbjct: 282 YATRSGGPAGVVPGGMQVVPYCPQPTTGNYGNRENFGRRHDARGQHPQQHHMPPAPYGQQ 341
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+ + P+ P+ + AQ G Q H G + +
Sbjct: 342 YPPHG-AQPGPAIPQQYGAQAGGYGGAPMQPHGGPAAPQPHGGHPAQPMHGGPAGGGMAG 400
Query: 468 NT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT DET
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGT-DET 458
Score = 46.6 bits (109), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E+
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTD--ET 458
Query: 244 RYSPAQKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 459 N----RMALYMLYSRL 470
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G +
Sbjct: 406 QIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGTDETNRM 461
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 462 ALYMLYSRL 470
>gi|154275678|ref|XP_001538690.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415130|gb|EDN10492.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225556762|gb|EEH05050.1| KH domain RNA-binding protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 68/367 (18%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT
Sbjct: 36 DEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT- 94
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
GP KA +V L+EG + G+ +SN G RL+++ NQ+G ++G+
Sbjct: 95 --GP---LQGTAKAYAIVAKGLLEGAPQLGMGGVASNNGTHP-VRLLISHNQMGTIIGRQ 148
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 149 GLKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDW--- 202
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
R T +VL +PA V +SV
Sbjct: 203 ------QRGTGTVLY---------NPA---VRASVG-----------------------G 221
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA-----IVTN--- 468
P + L + + G R + G G S GG S S +A +VT
Sbjct: 222 GPLNNSLGSGASTGGYGGRSYNRTGNGAD--FSDQTGGYNRRSNSDAASRGIPLVTEDGE 279
Query: 469 --TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDET 525
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+
Sbjct: 280 EVQTQNISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKAPHDETGERMFTIMGSAAAN 339
Query: 526 QAAQSLL 532
+ A LL
Sbjct: 340 EKALYLL 346
>gi|196009850|ref|XP_002114790.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
gi|190582852|gb|EDV22924.1| hypothetical protein TRIADDRAFT_28388 [Trichoplax adhaerens]
Length = 360
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 69/372 (18%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GATMPECDERLITVTASEGP 241
+V ++L N G++IGKGG +I LQ+++ I + T P ER+I +T S
Sbjct: 21 KVVLKLLIPNYAAGSIIGKGGDVINDLQNDSKTRIRLSHNNDTFPGTKERVIVITGSIA- 79
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKG----------LDFSSNKGLLVNARLVVASNQVGC 291
V V ++E SE+G LD + N+ L +++V + G
Sbjct: 80 ---------GVRQVNRFILEKVSEEGKADKAIQYGVLDKNRNRQL----KMIVPNAAAGV 126
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++GKGG+ I E++ +G +++ + I E + VTG +
Sbjct: 127 IIGKGGSNIKEIQDKSGAHVQVSQKKAQYAIDER----------------ILTVTGEFNE 170
Query: 352 NHFSGTLNTARTRSTSSVLTETS-PYSRLKDPASF-GVHSSVAVSHDFSQPPLTQGMDHL 409
+ L + + L TS YS ++ + +HS+ + + P MD
Sbjct: 171 RLTAWELIIWKCLEDINNLPNTSVSYSHVEPAGTLPALHSNYYGGGNANDRP----MDSS 226
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
S+ P + + ++ VT D G+ + ++ + T
Sbjct: 227 AASYD---PYTSERYSPTQVT-------QDAQADRQYGMQSYP---PTARNNRPSSYGET 273
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-----PRLGSTDRIVVISGTPDE 524
++I VP+++IG++ G+ G + ++ ISGA + V + P G+ DR V ++GT D
Sbjct: 274 VIKIPVPDSIIGAILGKRGKVISDIQNISGAHIQVSQRGDYIP--GTKDREVTVTGTNDA 331
Query: 525 TQAAQSLLQAFI 536
A L++ ++
Sbjct: 332 AHYADKLIKGYL 343
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE--CDE 230
+ LD +Q +++ N G +IGKGG+ I+ +Q ++GA + V + DE
Sbjct: 103 QYGVLDKNRNRQ---LKMIVPNAAAGVIIGKGGSNIKEIQDKSGAHVQVSQKKAQYAIDE 159
Query: 231 RLITVTA 237
R++TVT
Sbjct: 160 RILTVTG 166
>gi|440634730|gb|ELR04649.1| hypothetical protein GMDG_06931 [Geomyces destructans 20631-21]
Length = 473
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 157/368 (42%), Gaps = 45/368 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 119 IHIRAVISSAEAATVIGKGGENVTLIRKMSGAKCTVSDYQKGAVERILTVSG-------- 170
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A F +I + + LD S+ + RL+V +G ++GKGG I E++
Sbjct: 171 --VVDAAAKAFGLIIRTLNGEPLDQPSTPQSRTYPLRLLVPHVLIGSIIGKGGVRIREIQ 228
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R V + G V A Y V L + F G +A
Sbjct: 229 EQSGARLNA-SDACLPLSTE--RSVVVLGVADAVHIATYYVASTLLEQLTERFGGPTASA 285
Query: 362 ---RTRSTSSVL---TETSPYSRLKDPASFG---------VHSSVAVSHDFSQPPLTQGM 406
R+ + V+ + PY ++G + S + + QP QG
Sbjct: 286 YATRSGGPAGVIPGGMQVVPYVPQPAGGNYGHPDNVRHNDIRSRQTPAAQYGQP-YAQGP 344
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
S+ SP A GV + VG G G + H G + +V
Sbjct: 345 GPQQGGASMHYGGSP----AAGYGGVAPQQPQQVGHG---GPASHAGPP---AQPMQGVV 394
Query: 467 TNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I+GT +
Sbjct: 395 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAEC 454
Query: 525 TQAAQSLL 532
Q A +L
Sbjct: 455 NQMALYML 462
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +
Sbjct: 397 QPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTA---- 452
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 453 --ECNQMALYMLYSRL 466
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 396 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNSNERLVTITGT 451
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 452 AECNQMALYMLYSRL 466
>gi|380792097|gb|AFE67924.1| poly(rC)-binding protein 2 isoform f, partial [Macaca mulatta]
Length = 197
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
TG +++ D L + +R + I+G + + V +
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAGIPQSIIECVKQI 162
>gi|310790849|gb|EFQ26382.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 471
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 151/368 (41%), Gaps = 40/368 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 112 IHIRAVISSPEAATIIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGV------V 165
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A KA L+ L +E + SS + RL++ +G ++GKGG I E+++
Sbjct: 166 DAAAKAFGLIIRTL---NNEPLAEPSSAQSKTYPLRLLIPHILIGSIIGKGGARIREIQE 222
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNHFSGTLNTAR 362
+G + SD L +E VV G V A Y V L ++ F G +A
Sbjct: 223 ASGARLNA-SDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNDRFGGPAASAY 279
Query: 363 -TRSTSSVLT-----ETSPY-SRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
TRS + PY + ++G + HD H GL +
Sbjct: 280 ATRSGGPAGVVPGGMQVVPYCPQPTTGGNYGNRENYNRRHDAR-------AQHPGLPAAP 332
Query: 416 --DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG-------GLELGSGSKSAIV 466
P P +H + G G + + H G G A V
Sbjct: 333 YGAQPYPPHAAQPNPAMPIHYGAAQAGGYGAAAPMQPHAGAAVPQPHGAHPAQPMHGAAV 392
Query: 467 TNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT +
Sbjct: 393 AGAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEEC 452
Query: 525 TQAAQSLL 532
+ A +L
Sbjct: 453 NRMALYML 460
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 400 QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--ECN---- 453
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 454 RMALYMLYSRL 464
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 394 GAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGT 449
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 450 EECNRMALYMLYSRL 464
>gi|348519761|ref|XP_003447398.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 3 [Oreochromis niloticus]
Length = 588
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 127 FGAVSQE--ILPDLHVDILSQRNSVLTTAPSSS--ISYVSAVRPLSLESDRVATLDARTQ 182
A++Q+ ++P L+++ L +S L P ++ S V AV P +
Sbjct: 358 IAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAPAGYNP-----FLQQAP 412
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T + P
Sbjct: 413 EQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGT--P 469
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E FS+ + + + + V S+ G ++GKGG ++
Sbjct: 470 EAQF----KAQGRIFGKLKEENF-----FSAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 520
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ END V V+ISG F
Sbjct: 521 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHF 552
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R +Q + R+L VGA+IGK G I+ + + + + + R A+E
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDI--------HRKENAGAAE 244
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P + +S + R+I +K + + + +++ ++ VG L+GK G
Sbjct: 245 KPITIHSTPEGCSAAC--RMILDIMQKEAN-ETKTTEDIPLKILAHNSLVGRLIGKEGRN 301
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ ++ + TGT I I S Q L I +R + + G A +T +LR+ +
Sbjct: 302 LKKIEEDTGTKITISSLQDL-TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
>gi|392873506|gb|AFM85585.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 424
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 99/206 (48%), Gaps = 27/206 (13%)
Query: 156 SSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
SS+S S RP + A +R Q V R+L + GAVIGKGG I++L+++
Sbjct: 18 SSLSPSSCKRPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDY 77
Query: 216 GAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE----KGLDF 270
A +SV ++ P ER++++ A + + + S+++ E KG DF
Sbjct: 78 NASVSVPDSSGP---ERILSINAD----------IETIGDILSKIVPTLEEYQHYKGKDF 124
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
R++V +Q G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 125 D------CELRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQEC---CPHSTDRVVL 175
Query: 331 ISGEFSKVKDAVYNVTGRLRDNHFSG 356
+ G+ +V + + + G L ++ G
Sbjct: 176 LGGKPDRVVECIKIIMGLLSESPVKG 201
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 530 SLLQ----AFILT 538
LLQ +F +T
Sbjct: 411 YLLQNSCSSFFMT 423
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 347 GPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 402
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 403 QDQIQNAQY 411
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 350 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 403
>gi|367019960|ref|XP_003659265.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
gi|347006532|gb|AEO54020.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
Length = 482
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 150/365 (41%), Gaps = 34/365 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 123 IHVRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSG-------- 174
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L+ SS RL++ +G ++GKGG I E++
Sbjct: 175 --IVDAVAKAFGLIIRTLNNEPLNEPSSQHSKTYPLRLLIPHILIGSIIGKGGARIKEIQ 232
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 233 EASGARLNA-SDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGAAASA 289
Query: 362 R-TRSTSSVLTETS-----PYSRLKDPASFG----VHSSVAVSHDFSQPPLTQGMDHLGL 411
TRS PY+ ++G + + A PP +
Sbjct: 290 YATRSGGPAGAVPGGMQVIPYNPQPAGGNYGNRDNYYRARADPRAHHMPPQAYPPPYGHP 349
Query: 412 SHSLDCPSSPKLWTAQTVT----GVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
+ P+ P + A G H++ VG + G + G+
Sbjct: 350 HPAHPGPAVPMPYGAHPAAAYGAGPHVQ-PHPVGHAGPHVATGPHG--QPMPGAAHVPGA 406
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT + +
Sbjct: 407 PLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRM 466
Query: 528 AQSLL 532
A +L
Sbjct: 467 ALYML 471
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 411 QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--ECN---- 464
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 465 RMALYMLYSRL 475
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 405 GAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGT 460
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 461 EECNRMALYMLYSRL 475
>gi|242060324|ref|XP_002451451.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
gi|241931282|gb|EES04427.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
Length = 508
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 137/318 (43%), Gaps = 41/318 (12%)
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
+ V+A E E+ SPA A + +F + IE + G S++ + + RL+V Q
Sbjct: 113 VLVSAKEEVEAEMSPAMNAAIKIFKHINEIEEINSDGT-LSASASDICSVRLLVPFEQAV 171
Query: 291 CLLGKGGTIISEMRKVTGTSIRI-ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
L+GK G I + + TGT++RI D+LL + ++R+V+I G KV +A+ +V L
Sbjct: 172 HLIGKQGVTIKSIEESTGTTVRIRDEDELLSHETVDERIVEIRGASLKVLNALKSVLELL 231
Query: 350 RD---NHFSGTLNTARTRSTSSVL-TETSPYS-------RLKDPASFG--VHSSVAVSHD 396
R +H G L+ ++ V + S Y L D S G + S + HD
Sbjct: 232 RKFLVDH--GVLHLFERKNQEVVQPQDASNYPLAVNQDFLLSDQRSHGDPISSRLLYGHD 289
Query: 397 FSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
S D L + S P + + + H S D+
Sbjct: 290 PSFCGPHHATDSLMIQQSRANPKGSRFLYGRDPS-FHDPYSRDL---------------- 332
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRI- 515
S +++T T + VP V G G N+ +R +SGA V + E +G +
Sbjct: 333 --SQPTDSLITKITRTMQVPLAYAEDVIGVRGENIEYIRSVSGAVVALEE--IGDYQEVQ 388
Query: 516 VVISGTPDETQAAQSLLQ 533
V+I GTP + Q A L+Q
Sbjct: 389 VMIEGTPSQVQTAHQLVQ 406
>gi|340522569|gb|EGR52802.1| predicted protein [Trichoderma reesei QM6a]
Length = 369
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 150/360 (41%), Gaps = 52/360 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 GCDAISR------AYAIVARALLEGAPVVGMGGVVQNNGTHPIKLLISHNQMGTIIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G + D L + +R+V++ G ++ A++ ++ L D+
Sbjct: 153 LKIKHIQDVSGVRMVAQKDMLPQS---TERIVEVQGTPEGIQRAIWEISKCLVDDW---- 205
Query: 358 LNTARTRSTSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
R T +VL +P R + + G D+ P + + + S+
Sbjct: 206 -----QRGTGTVL--YNPVVRTQSSGSGSLGGSGYGNGSGRDYGSPRVMRTGNGADFSNG 258
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
P S R SD RG +H + G E+ T I
Sbjct: 259 GSRPFS-------------RRSDSDAATRGPP---THDENGEEI-----------QTQNI 291
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 292 SIPADMVGCIIGRGGSKISDIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 351
>gi|119498177|ref|XP_001265846.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
gi|119414010|gb|EAW23949.1| KH domain RNA-binding protein [Neosartorya fischeri NRRL 181]
Length = 360
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 23/217 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 40 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
+A LV L+EG + G+ N RL+++ NQ+G ++G+ G I
Sbjct: 96 --LQGTARAYALVAKGLLEGAPQMGMGGIVNNNGTHPVRLLISHNQMGTIIGRQGLKIKH 153
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT----- 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 154 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTILY 210
Query: 358 -------LNTARTRSTSSVLT--ETSPYSRLKDPASF 385
+ + + +TSSV + PY+R + A F
Sbjct: 211 NPAVRASVGGSTSMNTSSVGNGYNSRPYNRTGNGADF 247
>gi|322708646|gb|EFZ00223.1| hypothetical protein MAA_04000 [Metarhizium anisopliae ARSEF 23]
Length = 456
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 152/367 (41%), Gaps = 49/367 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 108 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------- 159
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ F +I + + L + S+ RL++ +G ++GKGG I E++
Sbjct: 160 --------IAFGLIIRTLNNEPLGEASTASSKTYPLRLLIPHILIGSIIGKGGARIREIQ 211
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L SE VV G V A Y V L + F G +A
Sbjct: 212 EASGARLNA-SDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASA 268
Query: 362 R-TRSTSSVLT-----ETSPYS------RLKDPASFGVHSSVAVSHDFSQPPLTQGMDHL 409
TRS + + + PYS P ++G H H PP T H
Sbjct: 269 YATRSGAPAGSIPGGMQVVPYSPQPASGHYGRPENYGRHQDRRAHH---MPPATY-PPHY 324
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQ--GLSHHKG--GLELGSGSKSAI 465
+ + P+ P + Q G+ + G H G G + G
Sbjct: 325 PHNAAPPNPAMPMQYGGQQAA---YGGAPHATQHMPPHVGPQPHGGPQGPPMQHGMPGGP 381
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
+T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT +
Sbjct: 382 LTQ---QIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECN 438
Query: 526 QAAQSLL 532
+ A +L
Sbjct: 439 RMALYML 445
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 385 QIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--ECN---- 438
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 439 RMALYMLYSRL 449
Score = 42.7 bits (99), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G +
Sbjct: 385 QIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGTEECNRM 440
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 441 ALYMLYSRL 449
>gi|395752934|ref|XP_002830848.2| PREDICTED: poly(rC)-binding protein 3 [Pongo abelii]
Length = 432
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 19/217 (8%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T+P++ + +P +E L R + V +L +VG++IGK G ++ +
Sbjct: 18 TSPAAPVCGGMFWKPGCME-----LLGCRGSRAAVGPELLW---EVGSIIGKKGETVKKM 69
Query: 212 QSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFS 271
+ E+GA I++ C ER++T+T GP KA ++ + E +
Sbjct: 70 REESGARINISEG--NCPERIVTIT---GPTDAIF---KAFAMIAYKFEEDIINSMSNSP 121
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
+ V RLVV ++Q G L+GKGG+ I E+R+ TG +++ D L + +R V I
Sbjct: 122 ATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDML---PNSTERAVTI 178
Query: 332 SGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSS 368
SG + V + + ++ G R + S+
Sbjct: 179 SGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPAST 215
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T+ ++VP + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTPD
Sbjct: 129 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 183
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 149 VLTTAPSSSISYVSAVRPLSLESDRVATLD--ARTQQQEVSFRILCSNDKVGAVIGKGGT 206
V T P+ +I A+ E D + ++ T + V+ R++ + G++IGKGG+
Sbjct: 89 VTITGPTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGS 148
Query: 207 IIRALQSEAGAFISV-GATMPECDERLITVTAS 238
I+ ++ GA + V G +P ER +T++ +
Sbjct: 149 KIKEIRESTGAQVQVAGDMLPNSTERAVTISGT 181
>gi|408395856|gb|EKJ75028.1| hypothetical protein FPSE_04740 [Fusarium pseudograminearum CS3096]
Length = 372
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/355 (21%), Positives = 151/355 (42%), Gaps = 49/355 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 44 QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCDAI 103
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SR A +V L+EG G+ +L+++ NQ+G ++G+ G I
Sbjct: 104 SR------AYAIVARALLEGAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGRQGLKIKH 157
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 158 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAIWEICKCLVDDW--------- 205
Query: 363 TRSTSSVL----TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
R T +VL T P S G + S P + + + S+
Sbjct: 206 QRGTGTVLYNPVVRTQPSSSGSTSGGAGFNQGSGRSDYGGSPRVMRTGNGADFSN----- 260
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
S + + ++ + LRG +H + G E+ T I +P +
Sbjct: 261 GSSRPYNRRSDSDAALRGPP----------THDENGEEI-----------QTQNISIPAD 299
Query: 479 VIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 300 MVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 354
>gi|125558153|gb|EAZ03689.1| hypothetical protein OsI_25823 [Oryza sativa Indica Group]
Length = 610
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 129/308 (41%), Gaps = 59/308 (19%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSI-----------RIISDQLLK------CIS 323
RL+ G L+GK G +I + +G S+ R I+ L+ +
Sbjct: 312 RLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITVSALEKPGQKFSMV 371
Query: 324 EN------DRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT-ARTRSTSSVLTE--TS 374
EN DR+ QI+GE V+DA+ V +LR++ FS T + SS + E TS
Sbjct: 372 ENAVLRIFDRM-QITGEPMNVRDALSLVCEKLRNHCFSSEKTTYSNGHVPSSAIDELTTS 430
Query: 375 PYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHL 434
+ + + V H SQ + + + + L C SP++ G +
Sbjct: 431 SQVNISSTGQYSAGNLSRVDHRLSQNEIDSVQNSIS-AFDLGCLGSPQIQKPTIGCGTEI 489
Query: 435 RGSSD----VGRGWSQGLSHHKGGLE-------------------LGSGSKSAIVTNTTV 471
+ G G+++ G++ L G K+A +T T
Sbjct: 490 NNPINEVEKPANGNGTGINNLNTGMQNENGIDVSNHGATSLEEKKLLRGIKTATITRITY 549
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +V G+NG++ +R++SGA V H P ++D ++VISGTPDE Q+A ++
Sbjct: 550 EV--------AVCGDNGNDFTMIREMSGADVTAHYPLPETSDGMIVISGTPDEAQSALAM 601
Query: 532 LQAFILTG 539
+ G
Sbjct: 602 FLDLVKEG 609
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+ SFR+LC G +IGK G +I+A++ +GA + VG + C ER ITV+A E P +
Sbjct: 308 QFSFRLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITVSALEKPGQK 367
Query: 245 YSPAQKAVVLVFSRL 259
+S + AV+ +F R+
Sbjct: 368 FSMVENAVLRIFDRM 382
>gi|432934409|ref|XP_004081928.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Oryzias latipes]
Length = 600
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T + P
Sbjct: 425 EQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGT--P 481
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E FS+ + + + + V S+ G ++GKGG ++
Sbjct: 482 EAQF----KAQGRIFGKLKEENF-----FSAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 532
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ+ END V V+ISG F
Sbjct: 533 ELQNLTSAEVIVPRDQIP---DENDEVFVKISGHF 564
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 143/357 (40%), Gaps = 57/357 (15%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R +QQ+ RIL VGA+IGK G I+ + + + + + R A+E
Sbjct: 182 RPRQQDFPLRILVPTQFVGAIIGKEGLTIKNVTKQTQSKVDI--------HRKENAGAAE 233
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P + +S + R+I +K + + + +++ ++ VG L+GK G
Sbjct: 234 KPITIHSTPEGCSSAC--RMILDIMQKEAN-ETKTNEEIPLKILAHNSLVGRLIGKEGRN 290
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
+ ++ + TGT I I S Q L I +R + + G A + +L++ + + +
Sbjct: 291 LKKIEEETGTKITISSLQDL-TICNPERTITVKGSLEACCKAEVEIMKKLKEAYEN---D 346
Query: 360 TARTRSTSSVLTETSPYSRLKDPASFGVHSS------VAVSHDFSQPPLTQGMDHLGLSH 413
A ++++ P L + G+ SS A + PP+ + LSH
Sbjct: 347 IAAINQQANLI----PGLNLN---ALGIFSSGLPVLPPAAGSRGAVPPMPPAGYNPFLSH 399
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
S HL G V + H + E V +
Sbjct: 400 S-----------------SHLSGLYGVPPTSAIPHQHSQQAPE-----------QEVVYL 431
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQ 529
+P +G++ G+ G ++ +L +GA + I T+R+V+I+GTP+ AQ
Sbjct: 432 FIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGTPEAQFKAQ 488
>gi|342880804|gb|EGU81822.1| hypothetical protein FOXB_07617 [Fusarium oxysporum Fo5176]
Length = 372
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/360 (21%), Positives = 149/360 (41%), Gaps = 49/360 (13%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 GCDAISR------AYAIVARALLEGAPAMGMGGVVQSNGTHPIKLLISHNQMGTIIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 153 LKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAIWEICKCLVDDW---- 205
Query: 358 LNTARTRSTSSVL----TETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSH 413
R T +VL T P G S P + + + S+
Sbjct: 206 -----QRGTGTVLYNPVVRTQPSGSGNASGGAGFSQGSGRSDYGGSPRVMRTGNGADFSN 260
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
P + ++ + LRG +H + G E+ T I
Sbjct: 261 GNSRP-----YNRRSDSDAALRGPP----------THDENGEEI-----------QTQNI 294
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 295 SIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 354
>gi|85109816|ref|XP_963102.1| hypothetical protein NCU06251 [Neurospora crassa OR74A]
gi|28924753|gb|EAA33866.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 371
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 55/360 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 42 DEEYAQTTLTLRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
KA +V L+EG G+ + +L+++ NQ+G ++G+ G
Sbjct: 102 G------CDAVSKAYAVVARSLLEGAPSVGMGGVISANGTHPIKLLISHNQMGTVIGRQG 155
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +RVV++ G ++ AV+ + L D+ GT
Sbjct: 156 LKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIQRAVWEICKCLVDDWQRGT 212
Query: 358 ---LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
L R L Y + + S V + DFS S+S
Sbjct: 213 GTVLYNPVVRGGGQPLGGDRNYPQERSYGSSRV-TRTGNGADFS-------------SNS 258
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNTTVEI 473
P + R SD S+G +H + G E+ T I
Sbjct: 259 GGRP-------------YNRRSDSDAA---SRGPPTHDENGEEI-----------QTQNI 291
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P S +R+ I G+ + A LL
Sbjct: 292 SIPADMVGCIIGRQGSKISEIRKASGARISIAKGPHDESGERMFTIMGSAKANETALYLL 351
>gi|336469496|gb|EGO57658.1| hypothetical protein NEUTE1DRAFT_116898 [Neurospora tetrasperma
FGSC 2508]
gi|350290860|gb|EGZ72074.1| hypothetical protein NEUTE2DRAFT_144709 [Neurospora tetrasperma
FGSC 2509]
Length = 371
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 55/360 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 42 DEEYAQTTLTLRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
KA +V L+EG G+ + +L+++ NQ+G ++G+ G
Sbjct: 102 G------CDAVSKAYAVVARSLLEGAPSVGMGGVISANGTHPIKLLISHNQMGTVIGRQG 155
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +RVV++ G ++ AV+ + L D+ GT
Sbjct: 156 LKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIQRAVWEICKCLVDDWQRGT 212
Query: 358 ---LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
L R L Y + + S V + DFS S+S
Sbjct: 213 GTVLYNPVVRGGGQPLGGDRNYPQERSYGSSRV-TRTGNGADFS-------------SNS 258
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNTTVEI 473
P + R SD S+G +H + G EL T I
Sbjct: 259 GGRP-------------YNRRSDSDAA---SRGPPTHDENGEEL-----------QTQNI 291
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G G+ + +R+ SGA++ I P S +R+ I G+ + A LL
Sbjct: 292 SIPADMVGCIIGRQGTKISEIRKASGARISIAKGPHDESGERMFTIMGSAKANETALYLL 351
>gi|348519759|ref|XP_003447397.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Oreochromis niloticus]
Length = 581
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 33/215 (15%)
Query: 127 FGAVSQE--ILPDLHVDILSQRNSVLTTAPSSS--ISYVSAVRPLSLESDRVATLDARTQ 182
A++Q+ ++P L+++ L +S L P ++ S V AV P +
Sbjct: 358 IAAINQQANLIPGLNLNALGIFSSGLPVLPPAAGPRSAVPAVAP------------QQAP 405
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T + P
Sbjct: 406 EQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGT--P 462
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E FS+ + + + + V S+ G ++GKGG ++
Sbjct: 463 EAQF----KAQGRIFGKLKEENF-----FSAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 513
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ END V V+ISG F
Sbjct: 514 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHF 545
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R +Q + R+L VGA+IGK G I+ + + + + + R A+E
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDI--------HRKENAGAAE 244
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P + +S + R+I +K + + + +++ ++ VG L+GK G
Sbjct: 245 KPITIHSTPEGCSAAC--RMILDIMQKEAN-ETKTTEDIPLKILAHNSLVGRLIGKEGRN 301
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ ++ + TGT I I S Q L I +R + + G A +T +LR+ +
Sbjct: 302 LKKIEEDTGTKITISSLQDL-TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 68
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 69 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 125
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 126 STGAQVQVAGDMLP---NSTERAITIAG 150
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 120/291 (41%), Gaps = 35/291 (12%)
Query: 262 GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC 321
G E GL+ + + RL++ +VG ++GK G + +MR+ +G I I
Sbjct: 4 GVIEGGLNVT------LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNC--- 54
Query: 322 ISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKD 381
+R++ ++G + + A + +L ++ S N+ L P S+
Sbjct: 55 ---PERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGS 111
Query: 382 PASFG----------VHSSVAVSHDFSQPPLTQGMDHLGLSHSL-DCPS--SPKLWTAQT 428
G + V V+ D + + G+ S+ +C + A T
Sbjct: 112 LIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLEAYT 171
Query: 429 VTGVHLRGSSDVGR----GWSQG---LSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+ G + D+ + Q ++H G G A T+ E+ +P ++IG
Sbjct: 172 IQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAG---LDASAQTTSHELTIPNDLIG 228
Query: 482 SVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +RQ+SGA++ + P GSTDR V I+G+ AQ L+
Sbjct: 229 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 279
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 42/230 (18%)
Query: 153 APSSSISYVSAVRPLSLESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRA 210
P+++I A+ LE D +++ T V+ R++ + G++IGKGG I+
Sbjct: 63 GPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKE 122
Query: 211 LQSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQK-AVVLVFSRLIEGTS---- 264
++ GA + V G +P ER IT+ P+S ++ VV++ + I+G
Sbjct: 123 IRESTGAQVQVAGDMLPNSTERAITIAGI--PQSIIECVKQICVVMLEAYTIQGQYAIPQ 180
Query: 265 -------------------------EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
GLD S+ + L + ++ +GC++G+ G
Sbjct: 181 PDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT---TSHELTIPNDLIGCIIGRQGAK 237
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
I+E+R+++G I+I + DR V I+G + + A Y + RL
Sbjct: 238 INEIRQMSGAQIKIAN----PVEGSTDRQVTITGSAASISLAQYLINVRL 283
>gi|443685583|gb|ELT89137.1| hypothetical protein CAPTEDRAFT_171528 [Capitella teleta]
Length = 398
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 28/225 (12%)
Query: 168 SLESDR----VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA 223
SLE D V R + V RIL + GA+IGKGG I+ L+S+ A ++V
Sbjct: 4 SLEEDNTIGDVPLKKTRGEGPNVELRILLQSKNAGAIIGKGGANIKRLRSDYNATVTV-- 61
Query: 224 TMPECD--ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNAR 281
P+ ER++TV A+ G A + ++ V L + K L+F R
Sbjct: 62 --PDSSGPERVLTVGANLGT------ALEILLDVIPSLEDYKRFKDLEFE------CEMR 107
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE-NDRVVQISGEFSKVKD 340
++ +Q GC++G+GG I E+R TG I++ S +C + ++R+VQ++G+ V +
Sbjct: 108 WLIHQSQAGCVIGRGGNKIKELRDETGAQIKVYS----QCAPQSSERIVQLTGKPRVVVN 163
Query: 341 AVYNVTGRLRDNHFSGTLNTARTRSTSSVLT-ETSPYSRLKDPAS 384
++ + L+ G N + E Y++ +DP++
Sbjct: 164 SLATIFDLLQTAPPKGFNNPYDPNNFDEFYAPEYGGYTQFEDPSA 208
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 44/62 (70%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
++ +P+++ G++ G+ GS + ++RQ SGA + + EP GS DRI+ I+G+ D+ Q AQ L
Sbjct: 327 QVSIPKDLAGAIIGKGGSRIRQIRQESGAGINIDEPMQGSQDRIITITGSQDQIQNAQYL 386
Query: 532 LQ 533
LQ
Sbjct: 387 LQ 388
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
D GA+IGKGG+ IR ++ E+GA I++ M +R+IT+T S+
Sbjct: 333 DLAGAIIGKGGSRIRQIRQESGAGINIDEPMQGSQDRIITITGSQ 377
>gi|255932595|ref|XP_002557854.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582473|emb|CAP80658.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 101/432 (23%), Positives = 183/432 (42%), Gaps = 53/432 (12%)
Query: 130 VSQEILPDLHVDILSQRNSVLTTAPSSS-ISYVSAVRPLSLESDRVATLDARTQQQE--V 186
VS +P + +Q ++V+ AP+ + ++ + ++DR A+ D Q + V
Sbjct: 49 VSSSQVPAVEGAKDTQGDTVVPDAPNGKGLPDTQPIQSTASQADRAAS-DQPPQDESSWV 107
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
R + S+ + VIGKGG + ++ +GA +V ER++TV+ GP
Sbjct: 108 HIRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP----- 159
Query: 247 PAQKAVVLVFSRLIEGTSEKGLDFSSN-KGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
Q A F +I + + L+ +S + RL++ +G ++GKGG+ I E+++
Sbjct: 160 --QDAAAKAFGLIIRTLNNEPLEAASTAQSKTYPLRLLIPHILIGSIIGKGGSRIREIQE 217
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR 362
+G + SD L +E R + I G V A Y V L + + G +A
Sbjct: 218 ASGARLN-ASDACLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLSERYGGPAASAY 274
Query: 363 -TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLD 416
TRS + PY +G + H P G G+ +
Sbjct: 275 ATRSGGPAGAVPGGMQVVPYVPQPAGGQYGHPDTFKRHHPH---PNRAGGGAYGVPYLHG 331
Query: 417 CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK-----GGLEL---GSGSKSAIVT- 467
P+ + T +H + G G H+ GG + G G +A
Sbjct: 332 QPAPAPVPQ----TPMHFPAAPQAPYG---GAGPHQPAPFVGGPQQPTPGRGPPTAPAPV 384
Query: 468 -------NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG 520
T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+G
Sbjct: 385 GAAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQESSNERLVTITG 444
Query: 521 TPDETQAAQSLL 532
T + Q A +L
Sbjct: 445 TAECNQMALYML 456
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
A + A Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T
Sbjct: 382 APVGAAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQESSNERLVT 441
Query: 235 VTASEGPESRYSPAQKAVVLVFSRL 259
+T + E Q A+ +++SRL
Sbjct: 442 ITGTA--ECN----QMALYMLYSRL 460
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q S N+R+V I+G
Sbjct: 390 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE----SSNERLVTITGT 445
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 446 AECNQMALYMLYSRL 460
>gi|194881635|ref|XP_001974928.1| GG22043 [Drosophila erecta]
gi|190658115|gb|EDV55328.1| GG22043 [Drosophila erecta]
Length = 498
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V DAV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIDAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N T ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 422 NNTTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 481
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 482 AQYLLQ 487
>gi|358387038|gb|EHK24633.1| hypothetical protein TRIVIDRAFT_54511 [Trichoderma virens Gv29-8]
Length = 369
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 155/360 (43%), Gaps = 52/360 (14%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 GCDAISR------AYAIVARALLEGAPAVGMGGVIQSNGTHPIKLLISHNQMGTIIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ A++ ++ L D+
Sbjct: 153 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAIWEISKCLVDDW---- 205
Query: 358 LNTARTRSTSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHS 414
R T +VL +P R + + G + D+ P + + + S+
Sbjct: 206 -----QRGTGTVL--YNPVVRTQPSGSGSLGGSGYNGGGRGDYGSPRVMRTGNGADFSNG 258
Query: 415 LDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
P S R SD RG +H + G E+ T I
Sbjct: 259 GSRPFS-------------RRSDSDAANRGPP---THDENGEEI-----------QTQNI 291
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 292 SIPADMVGCIIGRGGSKISDIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 351
>gi|312079807|ref|XP_003142332.1| hypothetical protein LOAG_06748 [Loa loa]
gi|307762504|gb|EFO21738.1| hypothetical protein LOAG_06748 [Loa loa]
Length = 342
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 144/338 (42%), Gaps = 65/338 (19%)
Query: 208 IRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKG 267
I+ L+SE A ++V + + ER++T+TA+ + + +I E
Sbjct: 52 IKRLRSEFDANLTVPDS--QTPERVLTLTAT----------TENISNCLREIIPRLDENR 99
Query: 268 LDFSSNKGLLVN-----ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCI 322
D +G + +++V + G ++G+GG+ I E+R+ TG +++ S +C
Sbjct: 100 EDDHDRRGKKADRPDSEMKVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFS----RCA 155
Query: 323 SEN-DRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-K 380
++ +R+V ++GE K+ D + + L++ G + PY +
Sbjct: 156 PQSTERIVLLNGEVEKIIDCINIIIDVLKEIPIKGPVR---------------PYDPMYY 200
Query: 381 DPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDV 440
DP + +F + +G D+ G S+ P
Sbjct: 201 DPDIISDYGGYVPDRNFIS-RVGRGRDY-GFGGSVIPSRYP------------------- 239
Query: 441 GRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGA 500
G G+ G S I T ++ +P+ + G++ G+ GS + R+R+ SGA
Sbjct: 240 ------GRDDRYSGMRDMIGRYSPIPAMQTTQVTIPDELGGAIIGKGGSRINRVREESGA 293
Query: 501 KVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538
++ V R DRI+ ISGT ++ QAAQ LLQ + T
Sbjct: 294 QIEVEPHRDNGGDRIITISGTREQIQAAQYLLQQCVRT 331
>gi|195486812|ref|XP_002091665.1| GE12124 [Drosophila yakuba]
gi|194177766|gb|EDW91377.1| GE12124 [Drosophila yakuba]
Length = 497
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V DAV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIDAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 421 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESRAYITIDEPLPNSNDRIITISGTPKQIQM 480
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 481 AQYLLQ 486
>gi|147832545|emb|CAN68300.1| hypothetical protein VITISV_009906 [Vitis vinifera]
Length = 408
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFS 336
V RL+V SNQ+GC++GKGG II +R +G IRI+ D L C ++ ++QIS E
Sbjct: 283 VTVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSCSLSSNELIQISREPF 342
Query: 337 KVKDAVYNVTGRLRDN 352
V+ +Y + RL DN
Sbjct: 343 IVRKILYQIASRLHDN 358
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GATMPEC 228
+ +V+ R+L ++++G VIGKGG II++++SE+GA I + +P C
Sbjct: 279 EANQVTVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSC 327
>gi|380479025|emb|CCF43264.1| KH domain-containing protein [Colletotrichum higginsianum]
Length = 384
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 155/362 (42%), Gaps = 42/362 (11%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGK G + L+ E G V + +R++T+T
Sbjct: 40 DEEYAQAQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 99
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +S +A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 100 --GCQS----VSEAYSIVARALLEGAPSLGMGGVVQNNGTHPIKLLISHNQMGTIIGRQG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G +K AV+ + L D+
Sbjct: 154 LKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIKGAVWEICKCLVDDW---- 206
Query: 358 LNTARTRSTSSVL----TETSPYSRLKDPASFGVHSS-VAVSHDFSQPPLTQGMDHLGLS 412
R T +VL T P + S SS S+D+S P + +
Sbjct: 207 -----QRGTGTVLYNPAVRTQPGTTSTTGGSTATFSSGGGRSNDYSAPRVMR------TG 255
Query: 413 HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNTTV 471
+ D ++ G G S+G +H + G EL T
Sbjct: 256 NGADFSTNSNSNNGGGGGGGRPYGRRSDSDAASRGPPTHDENGEEL-----------QTQ 304
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQS 530
I +P +++G + G GS + +R+ SGA++ I P + +R+ I GT ++A
Sbjct: 305 NISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDDTGERMFTIMGTAKANESALF 364
Query: 531 LL 532
LL
Sbjct: 365 LL 366
>gi|365766932|gb|EHN08421.1| Pbp2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 413
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/396 (22%), Positives = 165/396 (41%), Gaps = 68/396 (17%)
Query: 167 LSLESDRVATLDARTQQQ-----------EVSFRILCSNDKVGAVIGKGGTIIRALQSEA 215
L E RVA DA + +V R+LC ++G G I ++SE
Sbjct: 37 LEAEIKRVALKDADSHSDNDHDSPDNVPSDVHLRMLCLVKHASLIVGHKGATISRIKSET 96
Query: 216 GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIE--GTSEKGLDFSSN 273
A I++ + ER++ V + KA ++ L+E G + G D +
Sbjct: 97 SARINISNNIRGVPERIVYVRGT------CDDVAKAYGMIVRALLEEHGNEDNGEDIEIS 150
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
LL+ L +GC++GK G+ + E+ ++ + +QLL NDR++ I+G
Sbjct: 151 INLLIPHHL------MGCIIGKRGSRLREIEDLSAAKLFASPNQLLLS---NDRILTING 201
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
V DA++ T + S TL + S + + Y P F +SV +
Sbjct: 202 ----VPDAIHIATF-----YISQTLLNFQMESPQKNVKRSIYYQ----PTQF---NSVLI 245
Query: 394 SHDFSQP------------PLTQGMDH-----LGLSHSLDCPSSPKLWTAQTVTGVHLRG 436
H SQP P + + + L +S + ++P+ TA +
Sbjct: 246 DH--SQPNTIFHQRNHQYHPSDKLLSYKPNKNLPISSTXLSMATPQYTTASVANATAFQP 303
Query: 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
+ + ++ G + + ++ EI + E +G+V G++G ++ +++
Sbjct: 304 NFVI-----PNVTVLDGPVISPAPGNHLLMNFVQQEIFIDEKFVGNVIGKDGKHINSVKE 358
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+G +I+ +P GS++R + I GT +QAA L+
Sbjct: 359 STGCSIIIQDPVEGSSERRLTIRGTFMASQAAIMLI 394
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 432 VHLRGS-SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
V++RG+ DV + + + + LE + ++ +++P +++G + G+ GS
Sbjct: 114 VYVRGTCDDVAKAYGMIV---RALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSR 170
Query: 491 LLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDETQAAQSLLQAFILT 538
L + +S AK+ +L S DRI+ I+G PD A + +L
Sbjct: 171 LREIEDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLLN 219
>gi|357437527|ref|XP_003589039.1| Far upstream element-binding protein [Medicago truncatula]
gi|355478087|gb|AES59290.1| Far upstream element-binding protein [Medicago truncatula]
Length = 605
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 32/192 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I V M P RL+ +T +
Sbjct: 110 QGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTS- 168
Query: 241 PESRYSPAQKAVVLVFSRLIEG---------TSEKGLD-FSSNKGLLVNARLVVASNQVG 290
+ A+K + V + G T + G D FS + + +N+VG
Sbjct: 169 --DAIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFS----------MKIPNNKVG 216
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK------DAVYN 344
++GKGG I M+ TG I++I L + +R ++I G +++ D++ +
Sbjct: 217 LIIGKGGETIKSMQATTGARIQVIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILS 276
Query: 345 VTGRLRDNHFSG 356
RLR+ SG
Sbjct: 277 GENRLRNPSMSG 288
>gi|67536752|ref|XP_662150.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|40741699|gb|EAA60889.1| hypothetical protein AN4546.2 [Aspergillus nidulans FGSC A4]
gi|259482624|tpe|CBF77283.1| TPA: KH domain RNA-binding protein (AFU_orthologue; AFUA_2G02780)
[Aspergillus nidulans FGSC A4]
Length = 542
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 25/218 (11%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT +
Sbjct: 224 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGA---- 279
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
S +A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 280 --LSGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHP-IRLLISHNQMGTIIGRQGLKIK 336
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT---L 358
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT L
Sbjct: 337 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGTGTIL 393
Query: 359 NTARTRST-----------SSVLTETSPYSRLKDPASF 385
RS+ +S + PY+R + A F
Sbjct: 394 YNPAVRSSVGSGSIQHNGGNSDSYNSRPYNRTGNGADF 431
>gi|222636947|gb|EEE67079.1| hypothetical protein OsJ_24052 [Oryza sativa Japonica Group]
Length = 544
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 128/308 (41%), Gaps = 59/308 (19%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSI-----------RIISDQLLK------CIS 323
RL+ G L+GK G +I + +G S+ R I+ L+ +
Sbjct: 246 RLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITVSALEKPGQKFSMV 305
Query: 324 EN------DRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNT-ARTRSTSSVLTE--TS 374
EN DR+ QI+GE V+DA+ V +LR++ FS T SS + E TS
Sbjct: 306 ENAVLRIFDRM-QITGEPMNVRDALSLVCEKLRNHCFSSEKTTYGNGHVPSSAIDELTTS 364
Query: 375 PYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHL 434
+ + + V H SQ + + + + L C SP++ G +
Sbjct: 365 SQVNISSTGQYSAGNLSRVDHRLSQNEIDSVQNSIS-AFDLGCLGSPQIQKPTIGCGTEI 423
Query: 435 RGSSD----VGRGWSQGLSHHKGGLE-------------------LGSGSKSAIVTNTTV 471
+ G G+++ G++ L G K+A +T T
Sbjct: 424 NNPINEVEKPANGNGTGINNLNTGMQNENGIDVSNHGATSLEEKKLLRGIKTATITRITY 483
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E+ +V G+NG++ +R++SGA V H P ++D ++VISGTPDE Q+A ++
Sbjct: 484 EV--------AVCGDNGNDFTMIREMSGADVTAHYPLPETSDGMIVISGTPDEAQSALAM 535
Query: 532 LQAFILTG 539
+ G
Sbjct: 536 FLDLVKEG 543
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+ SFR+LC G +IGK G +I+A++ +GA + VG + C ER ITV+A E P +
Sbjct: 242 QFSFRLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITVSALEKPGQK 301
Query: 245 YSPAQKAVVLVFSRL 259
+S + AV+ +F R+
Sbjct: 302 FSMVENAVLRIFDRM 316
>gi|328702411|ref|XP_003241892.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Acyrthosiphon pisum]
Length = 428
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPE 242
++ R+L + G++IGKGG I L+++ A ++V P+C ER++T+ +S
Sbjct: 24 DIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTV----PDCPGPERILTIISSN--- 76
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---------VNARLVVASNQVGCLL 293
A K + V L +G S + V+ R++V +Q GC++
Sbjct: 77 ---DNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVRMLVHQSQAGCII 133
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
GKGG + E+R+ TG+ I+I + C DRVVQI+G+ + D V V L+
Sbjct: 134 GKGGLKVKELREKTGSRIKIYTSC---CPMSTDRVVQITGKPNTCSDCVREVLDLLK 187
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
+G+G+ N + ++ +P+++ G++ G+ G+ + R+RQ SGA + + EP GS +RI+
Sbjct: 335 MGAGAGKPAAFNGSTQVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERII 394
Query: 517 VISGTPDETQAAQSLLQAFI 536
I+GT + Q AQ LLQ +
Sbjct: 395 TINGTDSQIQMAQYLLQQCV 414
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
S ++ D GA+IGK G IR ++ ++GA I++G DER+IT+ ++
Sbjct: 348 STQVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTD 400
>gi|328702409|ref|XP_001943097.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Acyrthosiphon pisum]
gi|328702413|ref|XP_003241893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Acyrthosiphon pisum]
Length = 426
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPE 242
++ R+L + G++IGKGG I L+++ A ++V P+C ER++T+ +S
Sbjct: 22 DIELRVLIPSKVAGSIIGKGGFNISRLRTDYNATVTV----PDCPGPERILTIISSN--- 74
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL---------VNARLVVASNQVGCLL 293
A K + V L +G S + V+ R++V +Q GC++
Sbjct: 75 ---DNALKVLGEVMGNLEDGGSRFKRGGAGGGQGNNDNQGGETDVDVRMLVHQSQAGCII 131
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
GKGG + E+R+ TG+ I+I + C DRVVQI+G+ + D V V L+
Sbjct: 132 GKGGLKVKELREKTGSRIKIYTSC---CPMSTDRVVQITGKPNTCSDCVREVLDLLK 185
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
+G+G+ N + ++ +P+++ G++ G+ G+ + R+RQ SGA + + EP GS +RI+
Sbjct: 333 MGAGAGKPAAFNGSTQVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERII 392
Query: 517 VISGTPDETQAAQSLLQAFI 536
I+GT + Q AQ LLQ +
Sbjct: 393 TINGTDSQIQMAQYLLQQCV 412
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
S ++ D GA+IGK G IR ++ ++GA I++G DER+IT+ ++
Sbjct: 346 STQVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITINGTD 398
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 90/176 (51%), Gaps = 20/176 (11%)
Query: 172 DRVATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP 226
DR+++ DA +++ ++ R+L +VG++IGK G ++ ++ ++ A I++
Sbjct: 39 DRMSSSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG-- 96
Query: 227 ECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
C ER+ T+T S + AV ++ +L E + S V RLV+ +
Sbjct: 97 SCPERITTITGST------AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPA 150
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+Q G L+GK GT I E+R+ TG +++ D L + +R V +SG V DA+
Sbjct: 151 SQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 199
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 285 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 344
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 345 ITACLETAKS 354
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 143 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 202
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 203 VRQICAVILESP 214
>gi|218189965|gb|EEC72392.1| hypothetical protein OsI_05673 [Oryza sativa Indica Group]
gi|222622089|gb|EEE56221.1| hypothetical protein OsJ_05205 [Oryza sativa Japonica Group]
Length = 442
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 3/166 (1%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTASEGPESRYS 246
FR++ + DKVG +IG+ G I+ L + A + V A R++ ++A+E ++
Sbjct: 99 FRLVVATDKVGGLIGRRGDTIKRLCEDTRARVRVLEAAAAAAANRIVLISATEESQAELP 158
Query: 247 PAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
PA A + +F + + D S + +A+L+V S Q L+GK G I +++
Sbjct: 159 PAMDAAIKIFMHINDIEKINCDDTLSGSAPEKCSAKLLVPSAQATHLIGKQGVRIKSIQE 218
Query: 306 VTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
TG +++II +LL ++R+V I G KV A+ +V G LR
Sbjct: 219 TTGATVKIIDKVELLSYDVVDERIVDIHGAPLKVLHALKSVLGVLR 264
>gi|392894107|ref|NP_497351.3| Protein PES-4 [Caenorhabditis elegans]
gi|373220643|emb|CCD73932.1| Protein PES-4 [Caenorhabditis elegans]
Length = 432
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I+ ++ E+GA I++ C ER++T+T + G
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTLGVIG-- 127
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA +V ++ E + L +S + R++V + Q G L+GKGG+ I ++R+
Sbjct: 128 ----KAFNMVCNKFEE---DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIRE 180
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L +R V +SG + + V L + G+ T R +
Sbjct: 181 ATGASIQVASEMLPH---STERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKP 237
Query: 366 TSSVL 370
T + L
Sbjct: 238 TFNPL 242
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDE---- 524
T+ +IVP GS+ G+ GS + +R+ +GA + V L ST+R V +SGT D
Sbjct: 154 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLC 213
Query: 525 -TQAAQSLLQA 534
TQ Q LL+A
Sbjct: 214 MTQVCQILLEA 224
>gi|406866225|gb|EKD19265.1| KH domain RNA binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 545
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 42/368 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + ++ + VIGKGG + +++ +GA +V ER++TV+
Sbjct: 120 IHIRAVITSAEAATVIGKGGENVSSIRKMSGAKCTVSDYQKGAVERILTVSG-------- 171
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A F +I + + L+ SS + RL++ +G ++GKGG I E++
Sbjct: 172 --VVDAAAKAFGLIIRTLNNEPLEAPSSAQSKTYPLRLLIPHILIGSIIGKGGVRIREIQ 229
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 230 EASGARLNA-SDSCLPLSTERSLVVL--GVADAVHIATYYVGSTLFEQLSERFGGPAASA 286
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+RS + PY +FG H + +QG + H
Sbjct: 287 YASRSGGPAGVVPGGMQVVPYVPQPAGGNFG-HPDHRRHQERPHQTPSQGYNQPYSGHG- 344
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDV-----GRGWSQGLSHHKGGLELGSG----SKSAIV 466
+ Q +H GS V G G Q H GG +G +V
Sbjct: 345 ------QPQPQQPGNPMHYGGSPVVQGGYGGTGPQQPHQAHMGGPGPHAGPIPPQGGPVV 398
Query: 467 TNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I+GT +
Sbjct: 399 PGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAEC 458
Query: 525 TQAAQSLL 532
Q A +L
Sbjct: 459 NQMALYML 466
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTA---- 456
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 457 --ECNQMALYMLYSRL 470
>gi|348519757|ref|XP_003447396.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Oreochromis niloticus]
Length = 611
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T + P
Sbjct: 436 EQEVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGT--P 492
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E FS+ + + + + V S+ G ++GKGG ++
Sbjct: 493 EAQF----KAQGRIFGKLKEENF-----FSAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 543
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ END V V+ISG F
Sbjct: 544 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHF 575
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R +Q + R+L VGA+IGK G I+ + + + + + R A+E
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDI--------HRKENAGAAE 244
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P + +S + R+I +K + + + +++ ++ VG L+GK G
Sbjct: 245 KPITIHSTPEGCSAAC--RMILDIMQKEAN-ETKTTEDIPLKILAHNSLVGRLIGKEGRN 301
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ ++ + TGT I I S Q L I +R + + G A +T +LR+ +
Sbjct: 302 LKKIEEDTGTKITISSLQDL-TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
>gi|322698395|gb|EFY90165.1| KH domain RNA-binding protein [Metarhizium acridum CQMa 102]
Length = 367
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 86/363 (23%), Positives = 161/363 (44%), Gaps = 60/363 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLD--FSSNKGLLVNA--RLVVASNQVGCLL 293
SR A +V L+EG G+ SN L + +L+++ NQ+G ++
Sbjct: 99 ECDAISR------AYAIVARALLEGAPAMGMGGIVQSNGTHLSSTAIKLLISHNQMGTII 152
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G+ G I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 153 GRQGLKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPDGIQRAVWEICKCLVDDW 209
Query: 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV---AVSHDFSQPPLTQGMDHLG 410
R T +VL +P R + S G+ S+ D+ P + + +
Sbjct: 210 ---------QRGTGTVL--YNPVVRTQ-AGSGGLGSNYNNGGGRSDYGSPRVMRTGNGAD 257
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQG-LSHHKGGLELGSGSKSAIVTNT 469
S+ P S R SD S+G +H + G E+
Sbjct: 258 FSNGGVRPFS-------------RRSDSDAA---SRGPPTHDENGEEI-----------Q 290
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T I +P +++G + G GS + +R+ SGA++ + + + +R+ I GT ++A
Sbjct: 291 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAK----TGERMFTIMGTAKANESAL 346
Query: 530 SLL 532
LL
Sbjct: 347 FLL 349
>gi|336273542|ref|XP_003351525.1| hypothetical protein SMAC_00067 [Sordaria macrospora k-hell]
gi|380095805|emb|CCC05851.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 372
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 151/362 (41%), Gaps = 58/362 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 42 DEEYSQTTLTLRAIVSSKEAGVIIGKGGQNVANLRDETGVKAGVSKVVQGVHDRVLTITG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGC 291
KA V L+EG G+ G +++A +L+++ NQ+G
Sbjct: 102 G------CDAVSKAYAAVARSLLEGAPSVGM------GGVISANGTHPLKLLISHNQMGT 149
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++G+ G I ++ V+G +R+++ + + S +RVV++ G ++ AV+ + L D
Sbjct: 150 VIGRQGLKIKHIQDVSG--VRMVAQKEMLPQS-TERVVEVQGTPEGIERAVWEICKCLVD 206
Query: 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGL 411
+ R T +VL +P R G + + +T+ G
Sbjct: 207 DW---------QRGTGTVL--YNPVVRGPGAPVSGGERNYPQERSYGSSRVTR----TGN 251
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTV 471
S + + ++ + RG +H + G E+ T
Sbjct: 252 GADFSSNSGGRAYNRRSDSDAASRGPP----------THDENGEEI-----------QTQ 290
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQS 530
I +P +++G + G GS + +R+ SGA++ I P S +R+ I G+ + A
Sbjct: 291 NISIPADMVGCIIGRAGSKISEIRKQSGARISIAKGPHDESGERMFTIMGSAKANETALY 350
Query: 531 LL 532
LL
Sbjct: 351 LL 352
>gi|308460519|ref|XP_003092563.1| CRE-PES-4 protein [Caenorhabditis remanei]
gi|308253083|gb|EFO97035.1| CRE-PES-4 protein [Caenorhabditis remanei]
Length = 436
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I+ ++ E+GA I++ C ER++T+T + G
Sbjct: 73 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTLGVIG-- 128
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA +V ++ E + L +S + R++V + Q G L+GKGG+ I ++R+
Sbjct: 129 ----KAFNMVCNKFEE---DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIRE 181
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L +R V +SG + + V L + G+ T R +
Sbjct: 182 ATGASIQVASEMLPH---STERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKP 238
Query: 366 TSSVL 370
T + L
Sbjct: 239 TFNPL 243
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDE---- 524
T+ +IVP GS+ G+ GS + +R+ +GA + V L ST+R V +SGT D
Sbjct: 155 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLC 214
Query: 525 -TQAAQSLLQA 534
TQ Q LL+A
Sbjct: 215 MTQVCQILLEA 225
>gi|348519763|ref|XP_003447399.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 4 [Oreochromis niloticus]
Length = 584
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 108/213 (50%), Gaps = 26/213 (12%)
Query: 127 FGAVSQE--ILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQ 184
A++Q+ ++P L+++ L +S L P ++ + + P S E + A +Q
Sbjct: 358 IAAINQQANLIPGLNLNALGIFSSGLPVLPPAA-GPPTRIPPSSPEMSQSAP------EQ 410
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGPES 243
EV + + VGA+IGK G I+ L AGA I + A P+ ER++ +T + PE+
Sbjct: 411 EVVY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAESPDVTERMVIITGT--PEA 467
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
++ KA +F +L E FS+ + + + + V S+ G ++GKGG ++E+
Sbjct: 468 QF----KAQGRIFGKLKEENF-----FSAKEEVKLETHIKVPSSAAGRVIGKGGKTVNEL 518
Query: 304 RKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+ +T + + DQ END V V+ISG F
Sbjct: 519 QNLTSAEVIVPRDQ---TPDENDEVFVKISGHF 548
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 12/174 (6%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R +Q + R+L VGA+IGK G I+ + + + + + R A+E
Sbjct: 193 RPRQHDFPLRMLVPTQFVGAIIGKEGNTIKDVTKQTQSKVDI--------HRKENAGAAE 244
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
P + +S + R+I +K + + + +++ ++ VG L+GK G
Sbjct: 245 KPITIHSTPEGCSAAC--RMILDIMQKEAN-ETKTTEDIPLKILAHNSLVGRLIGKEGRN 301
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
+ ++ + TGT I I S Q L I +R + + G A +T +LR+ +
Sbjct: 302 LKKIEEDTGTKITISSLQDL-TIYNPERTITVKGSIDACCKAEVEITKKLREAY 354
>gi|366993026|ref|XP_003676278.1| hypothetical protein NCAS_0D03360 [Naumovozyma castellii CBS 4309]
gi|342302144|emb|CCC69917.1| hypothetical protein NCAS_0D03360 [Naumovozyma castellii CBS 4309]
Length = 445
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/380 (22%), Positives = 159/380 (41%), Gaps = 42/380 (11%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT 236
++ + + V R+LCS + V+G G I ++ + I+V + ER+I V
Sbjct: 66 IEEKFPEDNVHLRMLCSVKEASLVVGPKGESISKIKKDTSTRINVSENIRGVPERIIYVR 125
Query: 237 -ASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF-----SSNKGLLVNARLVVASNQVG 290
A + + Y KA+ + +G E D S + LV L+++ + +G
Sbjct: 126 GACDNVANAYLNIAKAIRKNEGIIFQGPEEDEKDREEGSQSKSSDELVTIHLLISHHLIG 185
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GK G+ + E+ + + + DQL S NDR++ I+G ++ A + +
Sbjct: 186 YIIGKHGSRLKEIEQTSSCKLYASPDQLF---SSNDRILTITGFPDAIQKATRCIGQTIL 242
Query: 351 DNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG 410
D H S T++ R+ + YS L + +S+ +++ S F Q +
Sbjct: 243 DCHES----TSKKRAI--FYQPSIGYSALSNSSSYYGYNN--QSQRFYQ------FNKYN 288
Query: 411 LSHSLDCPSSPKLWTAQT------VTGVHLRGSSDVGRGWSQGLSHHKGGL--------- 455
S P SP + T VT L+ + S +
Sbjct: 289 SYRSRRAPRSPPVMMIPTPVQPIQVTNQTLKQPVYTAETVANATSFTPNFVLPNVRIVNT 348
Query: 456 ---ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
+ G+ S +++ EI + E +G++ G G N+ +++ +G + + +P GS
Sbjct: 349 IISQSGNNQDSQLMS-VQREIYINEEFVGNIIGREGRNINSIKETTGCSIFIDDPVEGSY 407
Query: 513 DRIVVISGTPDETQAAQSLL 532
+R +VI GT +QAA L+
Sbjct: 408 ERKLVIKGTQMGSQAAIMLI 427
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 446 QGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505
QG + E GS SKS+ T+ +++ ++IG + G++GS L + Q S K+
Sbjct: 151 QGPEEDEKDREEGSQSKSSDEL-VTIHLLISHHLIGYIIGKHGSRLKEIEQTSSCKLYAS 209
Query: 506 EPRL-GSTDRIVVISGTPDETQAAQSLLQAFIL 537
+L S DRI+ I+G PD Q A + IL
Sbjct: 210 PDQLFSSNDRILTITGFPDAIQKATRCIGQTIL 242
>gi|320591828|gb|EFX04267.1| kh domain containing RNA-binding protein [Grosmannia clavigera
kw1407]
Length = 476
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 150/391 (38%), Gaps = 60/391 (15%)
Query: 173 RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
+ A +A + + R + S+ + +IGKGG + ++ + A +V ER+
Sbjct: 104 QTAPANAHDETSWIHIRAVISSPEAATIIGKGGENVSKIRQMSNAKCTVSDYQKGAVERI 163
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK-GLLVNARLVVASNQVGC 291
+TV+ AV F +I + + L SN RL++ +G
Sbjct: 164 LTVSG----------VVDAVAKAFGLIIRTLNNEPLGEPSNAHSKTYPLRLLIPHILIGS 213
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++GKGG+ I E+++ +G + SD L SE VV G V A Y V L +
Sbjct: 214 IIGKGGSRIKEIQEASGARLN-ASDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLE 270
Query: 352 N---HFSGTLNTART---------------------RSTSSVLTETSPYSRLKDPAS--- 384
F G +A + T YSR +DP +
Sbjct: 271 QLNERFGGPAASAYAARGGGPVGVVPGGMQVVPYLPQPAGGSYGRTENYSRRQDPRAQLP 330
Query: 385 ---FGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG 441
+G ++H P M + + P P A H
Sbjct: 331 PQGYGAPYGAPIAHG---PGPAVPMYGAQAAGAYGAPQLPHQNAAHHGAMPH-------- 379
Query: 442 RGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK 501
G G H G G + T +I +P +++G++ G+ G + +RQ+SG+
Sbjct: 380 -GPHAGQPPHAG----PGGHPAMAGAPLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSV 434
Query: 502 VIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ ++EP+ S +R+V I+GT + + A +L
Sbjct: 435 IKINEPQDNSNERLVTITGTEECNRMALYML 465
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 405 QIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTE--ECN---- 458
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 459 RMALYMLYSRL 469
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+V+G+ I+I Q + N+R+V I+G
Sbjct: 399 GAPLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQ----DNSNERLVTITGT 454
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 455 EECNRMALYMLYSRL 469
>gi|330917577|ref|XP_003297863.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
gi|311329164|gb|EFQ93994.1| hypothetical protein PTT_08419 [Pyrenophora teres f. teres 0-1]
Length = 371
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 80/372 (21%), Positives = 157/372 (42%), Gaps = 48/372 (12%)
Query: 169 LESDRVATLDARTQQQ----EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT 224
L D + + RT+++ +++ R + S+ + G +IGK G + L+ E G V
Sbjct: 24 LNMDGESEVAPRTEEEYAESQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVRAGVSKV 83
Query: 225 MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVV 284
+ +R+++VT S S KA L L+EG G+ RL++
Sbjct: 84 VQGVHDRVLSVTGS------LSGISKAYGLAAKGLLEGAPAMGMGGVIRTDGTHPIRLLI 137
Query: 285 ASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344
+ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G + ++ AV+
Sbjct: 138 SHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGSPAGIEKAVWE 194
Query: 345 VTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK---DPASFGVHSSVAVSHDFSQPP 401
+ L D+H R +VL +P R++ P
Sbjct: 195 IGKCLIDDH---------ERGYGTVL--YNPVVRVQPGAGPGPLSNGGGAPSGGGSGGGG 243
Query: 402 LTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGS 461
G + H D SP ++ ++ GS R +H + G E+
Sbjct: 244 GMGGRSYNRTGHGADFSDSPPAFSRRS-------GSDAASRPPPP--THTEDGEEM---- 290
Query: 462 KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISG 520
T I +P +++G + G G+ + +R+ S A++ I P + +R+ I+G
Sbjct: 291 -------QTQNISIPSDMVGCIIGRGGTKISEIRKTSNARISIAKAPHDDTGERMFTITG 343
Query: 521 TPDETQAAQSLL 532
+ + A LL
Sbjct: 344 SASANEKALYLL 355
>gi|47226335|emb|CAG09303.1| unnamed protein product [Tetraodon nigroviridis]
Length = 760
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 88/170 (51%), Gaps = 17/170 (10%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
Q+QEV++ + VGA+IGK G I+ L AGA I + A P+ ER++ +T +
Sbjct: 493 QEQEVAY-LFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAEKPDATERMVIITGT-- 549
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + + V S G ++GKGG +
Sbjct: 550 PEAQF----KAQGRIFGKLKEENI-----FTGKEEVRLETHIRVPSTAAGRVIGKGGKTV 600
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF--SKVKDAVYNVTGR 348
+E++ +T + + DQ +N+ VV+I G F S+V+ N + R
Sbjct: 601 NELQSLTSAEVIVPRDQTPD--EKNEVVVKICGHFFASQVRKKKKNPSLR 648
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 110/271 (40%), Gaps = 53/271 (19%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
+++ ++N +G L+GK G + ++ + TGT I I S Q L I N+R + + G +
Sbjct: 343 KIIASNNYIGRLIGKQGRNLKKIEEETGTKITISSLQDLN-IYNNERTITVKGSLEACCN 401
Query: 341 AVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV------AVS 394
A + +LR+ A +++ +TS L A G+ SS A
Sbjct: 402 AEVEIMKKLRE---------AYENDVAAINQQTSLIPGLNLNA-LGIFSSALPVLPSAAG 451
Query: 395 HDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGG 454
+ PP+ + + HS S P SS G + + H
Sbjct: 452 PRSTMPPVGPAGYNPFIGHS----SHP---------------SSLYGVPPASAIPHQHAA 492
Query: 455 LELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTD 513
E + +P +G++ G+ G ++ +L +GA + I + +T+
Sbjct: 493 QE-----------QEVAYLFIPTQAVGALIGKKGQHIKQLAHFAGASIKIAPAEKPDATE 541
Query: 514 RIVVISGTPDETQAAQ-----SLLQAFILTG 539
R+V+I+GTP+ AQ L + I TG
Sbjct: 542 RMVIITGTPEAQFKAQGRIFGKLKEENIFTG 572
>gi|341891904|gb|EGT47839.1| CBN-PES-4 protein [Caenorhabditis brenneri]
Length = 438
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I+ ++ E+GA I++ C ER++T+T + G
Sbjct: 76 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTLGVIG-- 131
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA +V ++ E + L +S + R++V + Q G L+GKGG+ I ++R+
Sbjct: 132 ----KAFNMVCNKFEE---DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIRE 184
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
TG SI++ S+ L +R V +SG + + V L + G+ T R +
Sbjct: 185 ATGASIQVASEMLPH---STERAVTLSGTADAINLCMTQVCQILLEAPPKGSTITYRPKP 241
Query: 366 TSSVL 370
T + L
Sbjct: 242 TFNPL 246
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDE---- 524
T+ +IVP GS+ G+ GS + +R+ +GA + V L ST+R V +SGT D
Sbjct: 158 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLC 217
Query: 525 -TQAAQSLLQA 534
TQ Q LL+A
Sbjct: 218 MTQVCQILLEA 228
>gi|296087074|emb|CBI33448.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 207 IIRALQSEAGAFISVGATMPECDERLITV-------TASEGPESRYSPAQKAVVLVFSRL 259
II+ L+ + I + T+ C+E ++T+ A + + SP Q A+ V ++
Sbjct: 9 IIKQLRVDTKFKIRIDETVSRCEELVVTIYNFSDETNAFDDSYTFVSPTQDALFRVHDKV 68
Query: 260 IEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII-SDQL 318
+ SEK + V +L+V S+Q+GC++GKGG II + +G I I+ +D L
Sbjct: 69 V---SEKVHSEDFEEASQVTVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYILKNDHL 125
Query: 319 LKCISENDRVVQISGE 334
L C D +VQISGE
Sbjct: 126 LSCALSFDELVQISGE 141
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 171 SDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
S++V + D Q V+ ++L ++D++G VIGKGG II+ + SE+GA I +
Sbjct: 70 SEKVHSEDFEEASQ-VTVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQIYI 119
>gi|256083131|ref|XP_002577803.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230295|emb|CCD76466.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 322
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R + +V R L S G +IGKGG I+ ++ E SV T+P+ + ER++ +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREE----YSVKVTIPDSNGPERVLVLDG 58
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +V+ +F +E SN+ V+ RL+V +Q GC++G+ G
Sbjct: 59 DLG----------SVIEIFRENLE-------KMQSNRDDGVDLRLLVHQSQAGCVIGRAG 101
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
I E+R+ +G + L C DRV+Q+ G+ KV D + ++
Sbjct: 102 YKIKELREQSGLHTLKVYQMLCPC--STDRVIQLVGDVGKVLDCLRSI 147
>gi|410922719|ref|XP_003974830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Takifugu
rubripes]
Length = 434
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 434 LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLR 493
+ G D G W ++H GG + +VT ++ +P+++ GS+ G+ G + +
Sbjct: 330 MSGGYDNGSSWD---NYHSGGRCSYNDIGGPVVT---TQVTIPKDLAGSIIGKGGQRIKQ 383
Query: 494 LRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
+R SGA + + EP GS DRI+ I+GT D+ Q AQ LLQ+ +L
Sbjct: 384 IRHDSGAAIKIDEPLEGSEDRIITITGTQDQIQNAQFLLQSSVL 427
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP ++ + +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 22 RPAEDADEQKSFKRSRNCDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYKASVSVPDS 81
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + ++ + L E G+DF RL+
Sbjct: 82 SGP---ERILSISAD------IKTVGEILLKIIPTLEEYQQYSGMDFD------CELRLL 126
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T TSI++ + C DRVV + G+ +V + +
Sbjct: 127 IHQSLAGSIIGVKGAKIKELRENTKTSIKLFQEC---CPQSTDRVVLVGGKMERVVECI 182
>gi|261197389|ref|XP_002625097.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239595727|gb|EEQ78308.1| KH domain RNA-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239606718|gb|EEQ83705.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327358051|gb|EGE86908.1| KH domain RNA-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 363
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 68/375 (18%)
Query: 170 ESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD 229
E+D + Q ++ R + S+ + G +IGK G + L+ E G V +
Sbjct: 28 EADGPPKTEEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVH 87
Query: 230 ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQ 288
+R++TVT GP KA +V L+EG + G+ SN G RL+++ NQ
Sbjct: 88 DRVLTVT---GP---LQGTAKAYAIVAKGLLEGAPQLGMGGVVSNTGTHP-VRLLISHNQ 140
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
+G ++G+ G I ++ +G +R+++ + + S +R+V++ G ++ AV+ +
Sbjct: 141 MGTIIGRQGLKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKC 197
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
L D+ R T +VL +PA V +SV
Sbjct: 198 LIDDW---------QRGTGTVLY---------NPA---VRASVG---------------- 220
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSA---- 464
P + L + G R + G G S GG S S +A
Sbjct: 221 -------GGPMNNSLGSGTAAGGYGGRSYNRTGNGAD--FSDQTGGYNRRSNSDAANRGI 271
Query: 465 -IVTN-----TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVV 517
+VT T I +P +++G + G GS + +R+ SGA++ I P + +R+
Sbjct: 272 PLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKAPHDETGERMFT 331
Query: 518 ISGTPDETQAAQSLL 532
I G+ + A LL
Sbjct: 332 IMGSAAANEKALYLL 346
>gi|196049606|pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 11/148 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 59
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 60 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 116
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R + I+G
Sbjct: 117 STGAQVQVAGDMLP---NSTERAITIAG 141
>gi|367027192|ref|XP_003662880.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
gi|347010149|gb|AEO57635.1| hypothetical protein MYCTH_2304021 [Myceliophthora thermophila ATCC
42464]
Length = 374
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 160/364 (43%), Gaps = 60/364 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T++
Sbjct: 42 DEEYAQTQLTLRAIVSSKEAGVIIGKGGKNVADLREETGVKAGVSKVVQGVYDRVLTISG 101
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-----RLVVASNQVGCL 292
G E+ +A +V L+EG G+ G++ N +L+++ NQ+G +
Sbjct: 102 --GCEA----ISRAYSVVARSLLEGAPTMGMG-----GVIQNNGTHPIKLLISHNQMGTI 150
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+G+ G I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 151 IGRQGLKIKYIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAVWEICKCLVDD 207
Query: 353 HFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHD---FSQPPLTQGMDHL 409
R T +VL +P R + + G+ + D + +T+ +
Sbjct: 208 W---------QRGTGTVL--YNPVVRTQGVGAPGISGGSSYMQDRAPYGGSRVTRTGNGA 256
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
S P +T ++ + RG +H + G E+
Sbjct: 257 DFSGGGSRP-----YTRRSDSDPAARGPP----------THDENGEEI-----------Q 290
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAA 528
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+ + A
Sbjct: 291 TQNISIPADMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGSAKANETA 350
Query: 529 QSLL 532
LL
Sbjct: 351 LFLL 354
>gi|389641821|ref|XP_003718543.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
gi|351641096|gb|EHA48959.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
Length = 483
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 157/376 (41%), Gaps = 42/376 (11%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D+ + + R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 118 DSHDESAWIHIRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSG 177
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
AV F +I + + L + SS RL++ +G ++GKG
Sbjct: 178 ----------IVDAVAKAFGLIIRTLNNEPLSEPSSAHSKTYPLRLLIPHILIGSIIGKG 227
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNH 353
G I E+++ +G + SD L SE VV G V A Y V L ++
Sbjct: 228 GARIKEIQEASGARLNA-SDSCLPLSSERSLVVM--GVADAVHIATYYVGSTLLEQLNDR 284
Query: 354 FSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPA--SFGVHSSVAVSHDFSQPPLTQG 405
F G +A TR+ V + PY L PA ++G + D +
Sbjct: 285 FGGPAASAYATRAGGPVGAVPGGMQVVPY--LPQPAGGNYGNRDNYGRRPDPRAGQMPPP 342
Query: 406 MDHLGLSHSLDCPSSPKL-----WTAQT-VTGVHLRGSSDVGRGWSQ--GLSHHK-GGLE 456
H + P P + AQ G H+ + VG Q G H G
Sbjct: 343 AAHPYAPQNPYAPHQPNPAVPPHYGAQAGAYGAHVP-APHVGHAGPQVHGAPHQPMHGQM 401
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G G S T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V
Sbjct: 402 PGPGGAS-----LTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLV 456
Query: 517 VISGTPDETQAAQSLL 532
I+GT + + A +L
Sbjct: 457 TITGTEECNRMALYML 472
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 412 QIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTE--ECN---- 465
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 466 RMALYMLYSRL 476
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+V+G+ I+I Q + N+R+V I+G
Sbjct: 406 GASLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQ----DNSNERLVTITGT 461
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 462 EECNRMALYMLYSRL 476
>gi|255569106|ref|XP_002525522.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223535201|gb|EEF36880.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 798
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S ++ NDKVG +IGKGG IR LQ +GA I + M P R + + +
Sbjct: 198 QTTSRKMEVPNDKVGVLIGKGGDTIRYLQYNSGAKIQITRDMDADPHSTTRPVELIGT-- 255
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSE----KGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
S S A+K + V + G S +GL + G+ + V + +VG ++G+G
Sbjct: 256 -LSSISKAEKLINAVIAEADAGGSPSLVARGLPSAQTAGVGDQIEMQVPNEKVGLIIGRG 314
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
G I ++ +G I++I + + +R V+++G+ +++
Sbjct: 315 GDTIKALQAKSGARIQLIPQHPPEGDASKERTVRVTGDRKQIE 357
>gi|169775165|ref|XP_001822050.1| RNA-binding protein rnc1 [Aspergillus oryzae RIB40]
gi|238496215|ref|XP_002379343.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|83769913|dbj|BAE60048.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220694223|gb|EED50567.1| KH domain RNA-binding protein [Aspergillus flavus NRRL3357]
gi|391872927|gb|EIT82002.1| polyC-binding proteins alphaCP-1 [Aspergillus oryzae 3.042]
Length = 357
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 23/216 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 40 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 96 --LQGTARAYALVAKGLLEGAPQMGMGGVVSNNGTHP-VRLLISHNQMGTIIGRSGLKIK 152
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT---- 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 153 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTIL 209
Query: 358 --------LNTARTRSTSSVLTETSPYSRLKDPASF 385
+ TA + PY+R + A F
Sbjct: 210 YNPAVRASVGTAPVNQNVGNGYSSRPYNRTGNGADF 245
>gi|226470354|emb|CAX70457.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 370
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTA 237
R + +V R L S G +IGKGG I+ ++ E SV T+P+ + ER++ +
Sbjct: 3 RGEGPKVELRFLISTKAAGVIIGKGGENIKKIREE----YSVKVTIPDSNGPERVLVLDG 58
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G +++ +F +E +N+ V+ RL+V +Q GC++G+GG
Sbjct: 59 DLG----------SIIEIFRENLE-------KMQNNRDEGVDLRLLVHYSQAGCVIGRGG 101
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
I E+R+ +G + L C S DRV+Q+ G+ KV + + ++
Sbjct: 102 YKIKELREQSGLHTLKVYQML--CPSSTDRVIQLVGDVGKVLNCLQSI 147
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
S + T+ ++ V +IG++ G +G + ++R S A + + + G DRI+ I+GTP
Sbjct: 290 SLLTPTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKLEPGVEDRIITITGTP 349
Query: 523 DETQAAQSLLQAFI 536
++ Q AQ LLQ +
Sbjct: 350 EQIQNAQFLLQMCV 363
>gi|160773967|gb|AAI55088.1| Igf2bp2 protein [Danio rerio]
Length = 261
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ +R++ +T P
Sbjct: 87 EQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP--P 143
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F++ + + + + V S+ G ++GKGG ++
Sbjct: 144 EAQF----KAQGRIFGKLKEENF-----FTAKEEVKLETHIKVPSSAAGRVIGKGGRTVN 194
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF-------SKVKDAVYNVTGRLRDNH 353
E++ +T + + DQ END V V+ISG F K+++ + V + H
Sbjct: 195 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHFFASQTAQRKIREIIQQVK-QQEQKH 250
Query: 354 FSGTLNTARTR 364
G T R++
Sbjct: 251 QQGAPTTPRSK 261
>gi|449449385|ref|XP_004142445.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
gi|449527683|ref|XP_004170839.1| PREDICTED: RNA-binding protein Nova-2-like [Cucumis sativus]
Length = 326
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 90/182 (49%), Gaps = 16/182 (8%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASE 239
++ R L SN G+VIGKGG+ I QS++GA I + P +R+I V+ S
Sbjct: 32 EKATYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGS- 90
Query: 240 GPESRYSPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
+ KA+ LV ++L+ E +E+G D RL+V + G ++GKGG+
Sbjct: 91 -----INEILKAMELVLAKLLSELHAEEGDDVEPR----TKVRLIVPHSSCGAIIGKGGS 141
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL-RDNHFSGT 357
I + + I+ IS Q ++ DR+V +SG + A + +L D H++ +
Sbjct: 142 TIKSFIEDSQAGIK-ISPQDNNYMASTDRLVTLSGTIEEQMRATDLIVSKLSEDPHYTQS 200
Query: 358 LN 359
+N
Sbjct: 201 MN 202
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDET 525
T + +V GSV G+ GS + + SGA++ + HE G+TDRI+++SG+ +E
Sbjct: 35 TYIRFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTTDRIIMVSGSINEI 94
Query: 526 QAAQSLLQAFILT 538
A L+ A +L+
Sbjct: 95 LKAMELVLAKLLS 107
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDE 524
N ++ I V + IG V G G N+L + Q SGA++ + + G+TDR V I+G+
Sbjct: 245 NNSLTIGVSDGHIGLVVGRGGRNILEISQASGARIKISDRGDFMSGTTDRKVTITGSQRA 304
Query: 525 TQAAQSLL 532
+AA+S++
Sbjct: 305 IRAAESMI 312
>gi|449450341|ref|XP_004142921.1| PREDICTED: uncharacterized protein LOC101216803 [Cucumis sativus]
gi|449494409|ref|XP_004159539.1| PREDICTED: uncharacterized LOC101216803 [Cucumis sativus]
Length = 694
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 25/236 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I V M P R++ + +
Sbjct: 133 QGSSKKIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSTTRMVELMGTP- 191
Query: 241 PESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ + A++ + V S G S + L S V + + +N+VG ++GKGG
Sbjct: 192 --DQIAKAEQLINDVLSEAESGGSGIVSRRLTGPSGSEQFV---MKIPNNKVGLVIGKGG 246
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT-----GRLRDN 352
I M+ TG I++I L + +R +QI G +++ A V R R++
Sbjct: 247 ETIKSMQARTGARIQVIPLHLPPGDTSTERTLQIDGSSEQIESAKQLVNEVISENRARNS 306
Query: 353 HFSGTLNTA--RTRSTSSVLTETSPYSRLKDP----ASFGVHSSVAVSHDFSQPPL 402
SG N + R SS +P ++ P G +S+ + ++ SQPP
Sbjct: 307 GMSGGYNQQGYQARPPSSWGPPGAP--PMQQPNYGYGQQGGYSAPSSQYNISQPPY 360
>gi|340959534|gb|EGS20715.1| hypothetical protein CTHT_0025510 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 373
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 149/356 (41%), Gaps = 58/356 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R L S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 43 DEEYAQTQLTLRALVSSKEAGVIIGKGGQNVANLREETGVKAGVSKVVQGVYDRVLTITG 102
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG + +L+++ NQ+G ++G+ G
Sbjct: 103 GCDAVSR------AYAVVARALLEGAPAVSMGGVVQHNGTHPIKLLISHNQMGTIIGRQG 156
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 157 QRIKYIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRAVWEICKCLVDDW---- 209
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R T +V +PA V + V HD G L + D
Sbjct: 210 -----QRGTGTVFY---------NPA---VRTQVGGFHD------RYGSRVLRTGNGADF 246
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
+ + + ++ + RG +H + G E+ T I +P
Sbjct: 247 SNGSRSYGRRSDSEGGPRGPP----------THDENGEEI-----------QTQNISIPA 285
Query: 478 NVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+++G + G GS + +R+ SGA++ I P + +R+ I GT + A LL
Sbjct: 286 DMVGCIIGRGGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANETALFLL 341
>gi|361123942|gb|EHK96076.1| putative RNA-binding protein rnc1 [Glarea lozoyensis 74030]
Length = 376
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 154/364 (42%), Gaps = 58/364 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D + +++ R + S+ + G +IGKGG + L+ E G V + +R++T+
Sbjct: 44 DEEYAESQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGCKAGVSKVVQGVHDRVLTIAG 103
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
G E+ KA +V L+EG + G+ + +L+++ NQ+G ++G+ G
Sbjct: 104 --GCEA----ISKAYAIVAKALLEGAPQMGMGGVVAQSGSHPIKLLISHNQMGTIIGRQG 157
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 158 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQKAVWEICKCLVDDWQRGT 214
Query: 358 LN-----TARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH--DFSQPPLTQGMDHLG 410
RT+ ++ +G + + + DFS
Sbjct: 215 GTVLYNPVVRTQPGAAGGMGGGQALGGSPRGDYGNNRVMRTGNGADFSN----------- 263
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVG-RGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+P+ + + R SD RG +H + G EL
Sbjct: 264 --------EAPRSYN-------NRRSDSDAAQRGPP---THDENGEEL-----------Q 294
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAA 528
T I +P +++G + G GS + +R+ SGA++ I P + +R+ I G+ + A
Sbjct: 295 TQNISIPSDMVGCIIGRAGSKISEIRKTSGARISIAKSPHDETGERMFTIMGSQKANETA 354
Query: 529 QSLL 532
LL
Sbjct: 355 LYLL 358
>gi|395516948|ref|XP_003762645.1| PREDICTED: poly(rC)-binding protein 4 [Sarcophilus harrisii]
Length = 338
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S G
Sbjct: 18 LTLRMIMHGKEVGSIIGKKGETVKRIREQSCARITISEG--SCPERITTITGSTGA---- 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 72 --VFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|425778068|gb|EKV16213.1| hypothetical protein PDIP_37280 [Penicillium digitatum Pd1]
gi|425780605|gb|EKV18611.1| hypothetical protein PDIG_09250 [Penicillium digitatum PHI26]
Length = 496
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 93/391 (23%), Positives = 164/391 (41%), Gaps = 52/391 (13%)
Query: 170 ESDRVATLDARTQQQE--VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
++DR + D Q + V R + S+ + VIGKGG + ++ +GA +V
Sbjct: 93 QADRTGS-DQPPQDESSWVHIRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRG 151
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN-KGLLVNARLVVAS 286
ER++TV+ GP Q A F +I + + L+ +S + RL++
Sbjct: 152 AVERILTVS---GP-------QDAAAKAFGLIIRTLNNEPLEAASTAQSKTYPLRLLIPH 201
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
+G ++GKGG+ I E+++ +G + SD L +E R + I G V A Y V
Sbjct: 202 ILIGSIIGKGGSRIREIQEASGARLNA-SDACLPLSTE--RSLVILGVADAVHIATYYVA 258
Query: 347 GRLRDN---HFSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDF 397
L + + G +A TRS + PY +G + H
Sbjct: 259 VTLVEQLSERYGGPAASAYATRSGGPAGAVPGGMQVVPYVPQPAGGQYGHPETFKRHHPH 318
Query: 398 SQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK----- 452
P G G+ + P+ + T +H + G G H+
Sbjct: 319 ---PNRAGGGAYGVPYLHGQPAPAPV----PQTPMHFPAAPQAPYG---GAGPHQPAPFV 368
Query: 453 GGLEL---GSGSKSAIVT--------NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK 501
GG + G G +A T +I +P +++G++ G+ G+ + +R +SG+
Sbjct: 369 GGPQQPTPGRGPPTAPAPVGASMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSV 428
Query: 502 VIVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ ++EP+ S +R+V I+GT + Q A +L
Sbjct: 429 IKINEPQESSNERLVTITGTAECNQMALYML 459
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLIT 234
A + A Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T
Sbjct: 385 APVGASMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQESSNERLVT 444
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVV 284
+T + E Q A+ +++SRL G S DF S G A++++
Sbjct: 445 ITGTA--ECN----QMALYMLYSRL--GWSPPFPDFPSLPGKTFGAQVLM 486
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
+S G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q S N+R+V
Sbjct: 389 ASMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE----SSNERLVT 444
Query: 331 ISGEFSKVKDAVYNVTGRL 349
I+G + A+Y + RL
Sbjct: 445 ITGTAECNQMALYMLYSRL 463
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 18/136 (13%)
Query: 203 KGGTIIRALQSE-----AGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
+GG + SE G VG E ERLI V++ E P+ SP +A++L+ S
Sbjct: 517 RGGIFSVCVNSEVQTGACGQVKEVGKNASE--ERLIVVSSQEIPDDPVSPTIEALILLHS 574
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD- 316
K + N L RLVV SN+VGC+LG+GG +I+EMR+ TG IR+ S
Sbjct: 575 --------KASTLAENHQL--TTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRVYSKA 624
Query: 317 QLLKCISENDRVVQIS 332
K +S ++ +VQ S
Sbjct: 625 DKPKYLSFDEELVQAS 640
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
ISGA+V +HE GS++ IV I G PD+ +AAQSLLQ FI
Sbjct: 803 ISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLLQGFI 842
>gi|195430448|ref|XP_002063267.1| GK21481 [Drosophila willistoni]
gi|194159352|gb|EDW74253.1| GK21481 [Drosophila willistoni]
Length = 505
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 33/194 (17%)
Query: 171 SDRVATLD-ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD 229
SD A D R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + +
Sbjct: 6 SDGDAAQDQKRNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGP 63
Query: 230 ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQV 289
ER I ++A ++ + + + +++ E+ DF + RL++ +
Sbjct: 64 ERTIQISADI----------ESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLA 105
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYN 344
GC++GKGG I E+R G + LK S DRVVQ G+ S+V +AV
Sbjct: 106 GCVIGKGGQKIKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVRE 158
Query: 345 VTGRLRDNHFSGTL 358
V RD G +
Sbjct: 159 VITLTRDTPIKGAI 172
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 429 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 488
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 489 AQYLLQ 494
>gi|400593892|gb|EJP61786.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 77/356 (21%), Positives = 153/356 (42%), Gaps = 39/356 (10%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 38 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 97
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 98 GCDAISR------AYAIVARALLEGAPAMGMGGILQGNGTHPIKLLISHNQMGTVIGRQG 151
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ A++ + L D+ G
Sbjct: 152 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRALWEICKCLVDDWQRG- 207
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
T V T+ SFG + ++S P + + + S+
Sbjct: 208 --TGTVLYNPVVRTQPGTTGGTGSTGSFGATGNGRA--EYSSPRVMRTGNGSDFSNG--- 260
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
+ ++ ++ + RG +H + G E+ T I +P
Sbjct: 261 GGGTRPFSRRSDSDAASRGPP----------THDENGEEI-----------QTQNISIPA 299
Query: 478 NVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+++G + G GS + +R+ SGA++ I P + +R+ I GT ++A LL
Sbjct: 300 DMVGCIIGRAGSKISEIRKTSGARISIAKAPHDETGERMFTIMGTAKANESALFLL 355
>gi|19075184|ref|NP_587684.1| RNA-binding protein [Schizosaccharomyces pombe 972h-]
gi|74626925|sp|O74919.1|RNC1_SCHPO RecName: Full=RNA-binding protein rnc1; AltName: Full=RNA-binding
protein that suppresses calcineurin deletion 1
gi|3702642|emb|CAA21234.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces pombe]
Length = 398
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/382 (21%), Positives = 161/382 (42%), Gaps = 70/382 (18%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
P+S + +SA P+ DA Q+++ R L S + G +IGK G + L+S
Sbjct: 71 PTSQVPPISAKPPMD---------DATYATQQLTLRALLSTREAGIIIGKAGKNVAELRS 121
Query: 214 EAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
V +P +R++T++ GP A + ++ +F++ T+ G +N
Sbjct: 122 TTNVKAGVTKAVPNVHDRVLTIS---GPLENVVRAYRFIIDIFAK--NSTNPDGTPSDAN 176
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+ RL++A + +G ++G+ G I ++ S R+I+ + + S +R V+I G
Sbjct: 177 TPRKL--RLLIAHSLMGSIIGRNGLRIKLIQD--KCSCRMIASKDMLPQS-TERTVEIHG 231
Query: 334 EFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
+ A++ + L D+ R +V +P SRL P S+A
Sbjct: 232 TVDNLHAAIWEIGKCLIDDW---------ERGAGTVF--YNPVSRLTQPL-----PSLAS 275
Query: 394 SHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG 453
+ Q + P++P S+ G + +
Sbjct: 276 TASPQQ---------------VSPPAAP---------------STTSGEAIPENFVSY-- 303
Query: 454 GLELGSGSKSAIVTNTTV--EIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLG 510
G ++ ++ + V I +P +++G + G GS + +R+ SG+K+ I EP
Sbjct: 304 GAQVFPATQMPFLQQPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDE 363
Query: 511 STDRIVVISGTPDETQAAQSLL 532
+ +R+ I+GT +E + A LL
Sbjct: 364 TGERMFTITGTHEENEKALFLL 385
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 17/108 (15%)
Query: 154 PSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQS 213
P + +SY + V P AT QQ +V+ I D VG +IG+GG+ I ++
Sbjct: 297 PENFVSYGAQVFP--------ATQMPFLQQPKVTQNISIPADMVGCIIGRGGSKISEIRR 348
Query: 214 EAGAFISVGATMP--ECDERLITVTASEGPESRYSPAQKAVVLVFSRL 259
+G+ IS+ A P E ER+ T+T + + +KA+ L++ +L
Sbjct: 349 TSGSKISI-AKEPHDETGERMFTITGT------HEENEKALFLLYQQL 389
>gi|378731796|gb|EHY58255.1| hypothetical protein HMPREF1120_06267 [Exophiala dermatitidis
NIH/UT8656]
Length = 492
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 156/370 (42%), Gaps = 45/370 (12%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+ S
Sbjct: 134 IHIRAVISSAEAATCIGKGGENVTQIRKLSGAKCTVSDYSRGAVERILTVSGS------- 186
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q+AV F +I + + LD S+ + RL++ +G ++GK G I E++
Sbjct: 187 ---QEAVSKAFGLIIRTLNNEPLDAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIREIQ 243
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 244 EASGARLNA-SDSCLPLSTERSLVVL--GVADAVHIATYYVAVTLVEQLTERFGGPAASA 300
Query: 362 ---RTRSTSSVLT---ETSPY------SRLKDPASFGVHSSVAVSHDFSQP---PLTQGM 406
R+ + V+ + PY + P ++ H+++ +QP P G
Sbjct: 301 YATRSGGPAGVIPGGMQVVPYVPQPAGGQYGHPDTYKRHNTLPPQRAPAQPYGAPQVHGA 360
Query: 407 DHLGLSHSLD----CPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
+ P +P A + + G+ Q + H + G
Sbjct: 361 APQPYAPYPQPYAATPRTPSYGAAVP------QPAGPYGQVPPQPVVPHGQPAQPAHGMP 414
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
+T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT
Sbjct: 415 GQPITQ---QIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQ 471
Query: 523 DETQAAQSLL 532
+ Q A +L
Sbjct: 472 ECNQMALYML 481
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 416 QPITQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQ--EC 473
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 474 N----QMALYMLYSRL 485
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 415 GQPITQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 470
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 471 QECNQMALYMLYSRL 485
>gi|125597123|gb|EAZ36903.1| hypothetical protein OsJ_21247 [Oryza sativa Japonica Group]
Length = 114
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 52/74 (70%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+VT +T+E+++P++ + S+ GS L ++ ++SGA V + + R + +++V ISGTP++
Sbjct: 33 LVTRSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQ 92
Query: 525 TQAAQSLLQAFILT 538
AQSLLQ FIL+
Sbjct: 93 ADKAQSLLQGFILS 106
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 23/210 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ ER++T+T
Sbjct: 17 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISDG--SSPERIVTITG-------- 66
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
A + + F+ + E E L N + V RLV ++Q G L+GKGG+ I
Sbjct: 67 --ASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIK 124
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
E+R+ TG +++ D L +R V ISG + V ++ + ++ G
Sbjct: 125 EIRESTGAQVQVAGDLLP---DSTERAVTISGTPHAITQCVKHICTVMLESPPKGATIPY 181
Query: 362 RTRSTS----SVLTETSPYSRLKDPASFGV 387
R + ++ +VLT+ + P F +
Sbjct: 182 RPKPSAGGGHTVLTQPHAATAFAIPGQFAI 211
>gi|326470883|gb|EGD94892.1| KH domain RNA-binding protein [Trichophyton tonsurans CBS 112818]
gi|326478447|gb|EGE02457.1| KH domain RNA-binding protein [Trichophyton equinum CBS 127.97]
Length = 367
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 153/351 (43%), Gaps = 46/351 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GPL 101
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G I
Sbjct: 102 QGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKY 158
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 159 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDW--------- 206
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
R T +VL + + + + G + A S+ S + + S D PSS
Sbjct: 207 QRGTGTVLYNPAVRASVGSSSGQGSVTGTATSYGGSSRSYNRTGNGADFS---DHPSS-- 261
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
RG++D + G+ L + + T I +P +++G
Sbjct: 262 ---------YSRRGNND----------NPNRGIPLVTEDGEEVQTQN---ISIPSDMVGC 299
Query: 483 VYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+ G G+ + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 300 IIGRGGTKISEIRRSSGARISIAKAPHDDTGERMFTIMGSAQANEKALYLL 350
>gi|268570691|ref|XP_002640810.1| C. briggsae CBR-PES-4 protein [Caenorhabditis briggsae]
Length = 447
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 14/148 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G I+ ++ E+GA I++ C ER++T+T + G
Sbjct: 74 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISDG--SCPERIVTITGTLGVIG-- 129
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA +V ++ E + L +S + R++V + Q G L+GKGG+ I ++R+
Sbjct: 130 ----KAFNMVCNKFEE---DMLLLPNSVPKPPITMRVIVPATQCGSLIGKGGSKIKDIRE 182
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG SI++ S+ L +R V +SG
Sbjct: 183 ATGASIQVASEML---PHSTERAVTLSG 207
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG-STDRIVVISGTPDE---- 524
T+ +IVP GS+ G+ GS + +R+ +GA + V L ST+R V +SGT D
Sbjct: 156 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLC 215
Query: 525 -TQAAQSLLQ 533
TQ Q LL+
Sbjct: 216 MTQVCQILLE 225
>gi|32451938|gb|AAH54653.1| Heterogeneous nuclear ribonucleoprotein K [Danio rerio]
gi|182890942|gb|AAI65841.1| Hnrnpk protein [Danio rerio]
Length = 420
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 21/162 (12%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R + V RIL + GAVIGKGG I+AL+++ A +SV ++ P ER+++V+A
Sbjct: 36 SRNSDEMVELRILLQSKNAGAVIGKGGKDIKALRTDYNATVSVPDSSGP---ERILSVSA 92
Query: 238 SEGPESRYSPAQKAVVL-VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
P ++L + L E KG+DF LL++ L G ++G
Sbjct: 93 D-------IPTVAEILLKIIPTLEEYQHHKGVDFDCELRLLIHQSL------AGSIIGLK 139
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV 338
G I E+R T T+I++ + C DRVV + G+ +V
Sbjct: 140 GAKIKELRDSTQTTIKLFQE---CCPQSTDRVVLVGGKAERV 178
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 451 HKGGLELGSGSKSAIVTN--TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR 508
+ G + G G +S+ T ++ +P+++ GS+ G+ G + ++R SGA + + EP
Sbjct: 322 YGGSMNDGYGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL 381
Query: 509 LGSTDRIVVISGTPDETQAA 528
GS DRI+ I+GT D+ Q A
Sbjct: 382 QGSEDRIITITGTQDQIQNA 401
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
S + G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 335 SYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLQ--GSEDRIIT 390
Query: 331 ISGEFSKVKDAVY 343
I+G ++++A+Y
Sbjct: 391 ITGTQDQIQNALY 403
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 342 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQ 395
>gi|238836388|gb|ACR61402.1| IGF-II mRNA-binding protein 2a variant C [Danio rerio]
Length = 453
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ +R++ +T P
Sbjct: 279 EQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP--P 335
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F++ + + + + V S+ G ++GKGG ++
Sbjct: 336 EAQF----KAQGRIFGKLKEENF-----FTAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 386
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF-------SKVKDAVYNVTGRLRDNH 353
E++ +T + + DQ END V V+ISG F K+++ + V + H
Sbjct: 387 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHFFASQTAQRKIREIIQQVK-QQEQKH 442
Query: 354 FSGTLNTARTR 364
G T R++
Sbjct: 443 QQGAPTTPRSK 453
>gi|195336152|ref|XP_002034707.1| GM22026 [Drosophila sechellia]
gi|194126677|gb|EDW48720.1| GM22026 [Drosophila sechellia]
Length = 345
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 36/188 (19%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +S V S+
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVS--------------VDDSQ 62
Query: 240 GPES--RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
GPE + S ++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 63 GPERTIQISADIESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGG 114
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 115 QKIKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDT 167
Query: 353 HFSGTLNT 360
G ++
Sbjct: 168 PIKGAIHN 175
>gi|402225510|gb|EJU05571.1| hypothetical protein DACRYDRAFT_20011 [Dacryopinax sp. DJM-731 SS1]
Length = 413
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 94/194 (48%), Gaps = 14/194 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q + R L +IGKGG+ + ++ ++GA I+V ++P ER++ VT GP
Sbjct: 120 QNIHMRALIVTQDASIIIGKGGSHVNEIREKSGARITVSESIPGNPERILNVT---GP-- 174
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISE 302
AV F ++ +++ + S G V + ++ ++++G L+GK G+ I E
Sbjct: 175 -----LDAVAKAFGLIVRQINDEPFEQPSVPGSRAVTIKFIIPNSRMGTLIGKAGSKIKE 229
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+++ +G + S+ LL +E RV+ +SG + A Y V L ++H S + A
Sbjct: 230 IQEASGAKLH-ASEGLLPGSTE--RVLNVSGVADAIHIATYYVGNSLLNSHPSYSSTHAS 286
Query: 363 TRSTSSVLTETSPY 376
+ + T+ Y
Sbjct: 287 YKQQRRPMASTTYY 300
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRII--------SDQLLKCISENDRVVQISG 333
+ ++ VG ++GKGG I+E+R V+G I+I+ ++ +SE +R+V I+G
Sbjct: 329 FYIPNDLVGSIIGKGGAKINEIRHVSGCQIKILEPGQGPAPGSGAVQPMSETERMVTITG 388
Query: 334 EFSKVKDAVYNVTGRL 349
+ ++ AV + R+
Sbjct: 389 GIANIQMAVQLLASRI 404
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T++ I+P + +G++ G+ GS + +++ SGAK+ E L GST+R++ +SG D
Sbjct: 206 TIKFIIPNSRMGTLIGKAGSKIKEIQEASGAKLHASEGLLPGSTERVLNVSGVAD 260
>gi|440469758|gb|ELQ38855.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae Y34]
gi|440482264|gb|ELQ62771.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae P131]
Length = 490
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/376 (24%), Positives = 157/376 (41%), Gaps = 42/376 (11%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D+ + + R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 118 DSHDESAWIHIRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSG 177
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
AV F +I + + L + SS RL++ +G ++GKG
Sbjct: 178 ----------IVDAVAKAFGLIIRTLNNEPLSEPSSAHSKTYPLRLLIPHILIGSIIGKG 227
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR---DNH 353
G I E+++ +G + SD L SE VV G V A Y V L ++
Sbjct: 228 GARIKEIQEASGARLNA-SDSCLPLSSERSLVVM--GVADAVHIATYYVGSTLLEQLNDR 284
Query: 354 FSGTLNTAR-TRSTSSVLT-----ETSPYSRLKDPA--SFGVHSSVAVSHDFSQPPLTQG 405
F G +A TR+ V + PY L PA ++G + D +
Sbjct: 285 FGGPAASAYATRAGGPVGAVPGGMQVVPY--LPQPAGGNYGNRDNYGRRPDPRAGQMPPP 342
Query: 406 MDHLGLSHSLDCPSSPKL-----WTAQT-VTGVHLRGSSDVGRGWSQ--GLSHHK-GGLE 456
H + P P + AQ G H+ + VG Q G H G
Sbjct: 343 AAHPYAPQNPYAPHQPNPAVPPHYGAQAGAYGAHVP-APHVGHAGPQVHGAPHQPMHGQM 401
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G G S T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V
Sbjct: 402 PGPGGAS-----LTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLV 456
Query: 517 VISGTPDETQAAQSLL 532
I+GT + + A +L
Sbjct: 457 TITGTEECNRMALYML 472
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 412 QIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTE--ECN---- 465
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 466 RMALYMLYSRL 476
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+V+G+ I+I Q + N+R+V I+G
Sbjct: 406 GASLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQ----DNSNERLVTITGT 461
Query: 335 FSKVKDAVYNVTGRLRDN 352
+ A+Y + RL N
Sbjct: 462 EECNRMALYMLYSRLGPN 479
>gi|428183593|gb|EKX52450.1| hypothetical protein GUITHDRAFT_101621 [Guillardia theta CCMP2712]
Length = 358
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/356 (21%), Positives = 148/356 (41%), Gaps = 50/356 (14%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA---TMPECDERLITVTASEGP 241
+++ +IL N G+VIGK G I +++ +GA + V + T P +R++ ++
Sbjct: 35 QMALKILIGNKSAGSVIGKAGATINSIKDTSGAKVKVSSNSETFPGTADRIVLISGKV-- 92
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+ S A+ +V S + + + N + V+ +V+ + G ++GKGG I+
Sbjct: 93 ETVLSAAK----MVISEMYRDPNSGRVPDDVNAVMTVS--IVIPAAACGLVIGKGGEKIN 146
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
+R+ T I++ + + N+R+V I G + + AV + + ++ N
Sbjct: 147 SLREETQAKIQLQAKDKVAIPGLNERIVTIQGTLPQAQTAVEKIVHLIHEDGNIRYENLG 206
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
S ++ + L G+ + + + GMD + P P
Sbjct: 207 TNYGMSGMMGKG-----LGQGYGMGMMPMQGAAAMYGGMQMPMGMDMASQGMGM-APGMP 260
Query: 422 KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIG 481
+ Q W G+S H G ++ +T +++ + ++ +G
Sbjct: 261 GVVPGQEY--------------W--GMSQHGLGTDM----------HTVLKLSITDDAVG 294
Query: 482 SVYGENGSNLLRLRQISGAKVIVHE-----PRLGSTDRIVVISGTPDETQAAQSLL 532
+ G+ G NL +SGA + V + P G+ +R + I GT Q AQ L+
Sbjct: 295 PLLGKGGCNLKEYISVSGANIKVSQRGDTIP--GTNNRYITIQGTAAAVQYAQLLV 348
>gi|8699624|gb|AAF78762.1|AF275629_1 bancal protein [Drosophila melanogaster]
Length = 508
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 32/186 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRSEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTLNT 360
G ++
Sbjct: 170 KGAIHN 175
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 479
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 480 AQYLLQ 485
>gi|296418898|ref|XP_002839062.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635056|emb|CAZ83253.1| unnamed protein product [Tuber melanosporum]
Length = 354
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 153/363 (42%), Gaps = 38/363 (10%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
R + ++ + VIGKGG + ++ A A +V ER++TV+
Sbjct: 1 MRAVITSAEAATVIGKGGENVTQIRRMAEAKCTVSDYQRGAGERILTVSG---------- 50
Query: 248 AQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
A AV F +I + + L + SS + RL+V +G ++GK G I E+++
Sbjct: 51 AVDAVAKAFGLIIRTLNNEPLEEASSPQSKTYPLRLLVPHILIGSIIGKSGGRIREIQEA 110
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR- 362
+G + S L +E VV G V A Y + L + F G +A
Sbjct: 111 SGARLN-ASGSCLPLSTERSLVVL--GVADAVHIATYYIANTLVEQLTERFGGPAASAYA 167
Query: 363 TRS-----TSSVLTETSPY------SRLKDPASFGVHSSVA--VSHDFSQPPLTQGMDHL 409
TRS + PY +P ++ H++ A ++ P G
Sbjct: 168 TRSGGPAGPMPGGMQVVPYQPQPLHGSYGNPDTYKRHNNNAQRTPNNPYGIPYLHGPAPA 227
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
+ + + P+ +A + G H G + G QG + + L
Sbjct: 228 PVPQAPIHYADPQAASAYSGAGPHQPGQAGAGPTPQQGPAPNPMANMLPG-------QPL 280
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I+GT + Q A
Sbjct: 281 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 340
Query: 530 SLL 532
+L
Sbjct: 341 YML 343
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++
Sbjct: 278 QPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQ---- 333
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 334 --ECNQMALYMLYSRL 347
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G +
Sbjct: 283 QIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNSNERLVTITGTQECNQM 338
Query: 341 AVYNVTGRL 349
A+Y + RL
Sbjct: 339 ALYMLYSRL 347
>gi|358368755|dbj|GAA85371.1| KH domain RNA-binding protein [Aspergillus kawachii IFO 4308]
Length = 360
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 104/220 (47%), Gaps = 27/220 (12%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 40 QSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+ +A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 96 --LNGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 152
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT---L 358
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT L
Sbjct: 153 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGTGTIL 209
Query: 359 NTARTRSTSSVLTETS-------------PYSRLKDPASF 385
R++ TS PY+R + A F
Sbjct: 210 YNPAVRASVGTTPSTSTMNQSVGNGYNSRPYNRTGNGADF 249
>gi|340521021|gb|EGR51256.1| predicted protein [Trichoderma reesei QM6a]
Length = 475
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 156/375 (41%), Gaps = 57/375 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 119 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------- 170
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L + S+ RL++ +G ++GKGG+ I E++
Sbjct: 171 --IVDAVAKAFGLIIRTLNNEPLTEASTASSKTYPLRLLIPHILIGSIIGKGGSRIREIQ 228
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L SE VV G V A Y V L + F G +A
Sbjct: 229 EASGARLN-ASDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASA 285
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPAS--------FGVHSSVAVSHDFSQPPLTQGMD 407
TRS + V + + PYS PAS +G H H P Q
Sbjct: 286 YATRSGAPVGSIPGGMQVVPYS--PQPASGHYGRAENYGRHQE-RRPHHMPPAPYPQPYA 342
Query: 408 HLGLSHSLDCPSSPKLW-----TAQTVTGVHLRG-----SSDVGRGWSQGLSHHKGGLEL 457
H G H P+ P + A H++ + G QG H G +
Sbjct: 343 H-GAPHG--TPAMPMQYGAGQPAAYGAAAPHVQPHMAPHTGPQAHGAPQGQPMHAG---M 396
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
G T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V
Sbjct: 397 PGGP-------ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVT 449
Query: 518 ISGTPDETQAAQSLL 532
I+GT + + A +L
Sbjct: 450 ITGTEECNRMALYML 464
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E
Sbjct: 401 ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTE------ 454
Query: 246 SPAQKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 455 ECNRMALYMLYSRL 468
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 66/145 (45%), Gaps = 24/145 (16%)
Query: 205 GTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264
GT +Q AG + GA P + T GP++ +P + +
Sbjct: 348 GTPAMPMQYGAGQPAAYGAAAPHVQPHMAPHT---GPQAHGAPQGQPM------------ 392
Query: 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
+ G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q +
Sbjct: 393 -----HAGMPGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQ----DNS 443
Query: 325 NDRVVQISGEFSKVKDAVYNVTGRL 349
N+R+V I+G + A+Y + RL
Sbjct: 444 NERLVTITGTEECNRMALYMLYSRL 468
>gi|226292229|gb|EEH47649.1| Poly(rC)-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 495
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 65/380 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 137 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 188
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 189 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 246
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 247 EASGARLNA-SDSCLPLSTE--RTLIILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 303
Query: 362 R-TRSTSSVLT-----ETSPY------SRLKDPASFGVH---SSVAVSHDFSQPPLTQGM 406
TRS + PY + P +F H + AVS P G
Sbjct: 304 YATRSGGPAGVVPGGMQVVPYIPQPAGGQYGHPDTFKRHQPQGTRAVSTGGYGVPYVHGQ 363
Query: 407 D----------HLGLS----HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
H G S ++ P P + A + VH G SQ +
Sbjct: 364 PGQPQMPQQALHYGASSRPGYTGAGPHQPSPYGAPQQSQVH-------GAPSSQPV---- 412
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG+ G+ T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S
Sbjct: 413 GGVVPGA--------PVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSN 464
Query: 513 DRIVVISGTPDETQAAQSLL 532
+R+V I+GTP+ Q A +L
Sbjct: 465 ERLVTITGTPECNQMALYML 484
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + PE
Sbjct: 421 VTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGT--PECN- 477
Query: 246 SPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 478 ---QMALYMLYSRL 488
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G V ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 418 GAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 473
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 474 PECNQMALYMLYSRL 488
>gi|313151207|ref|NP_998159.2| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 429
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 21/162 (12%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R + V RIL + GAVIGKGG I+AL+++ A +SV ++ P ER+++V+A
Sbjct: 36 SRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSVPDSSGP---ERILSVSA 92
Query: 238 SEGPESRYSPAQKAVVL-VFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKG 296
P ++L + L E KG+DF RL++ + G ++G
Sbjct: 93 D-------IPTVAEILLKIIPTLEEYQHHKGVDFD------CELRLLIHQSLAGSIIGLK 139
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV 338
G I E+R T T+I++ + C DRVV + G+ +V
Sbjct: 140 GAKIKELRDSTQTTIKLFQE---CCPQSTDRVVLVGGKAERV 178
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNAQ 414
Query: 530 SLLQAFIL 537
LLQ L
Sbjct: 415 YLLQNSAL 422
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQ 407
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
S + G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 347 SYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLQ--GSEDRIIT 402
Query: 331 ISGEFSKVKDAVY 343
I+G ++++A Y
Sbjct: 403 ITGTQDQIQNAQY 415
>gi|195585141|ref|XP_002082349.1| GD11524 [Drosophila simulans]
gi|194194358|gb|EDX07934.1| GD11524 [Drosophila simulans]
Length = 496
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 479
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 480 AQYLLQ 485
>gi|218184819|gb|EEC67246.1| hypothetical protein OsI_34185 [Oryza sativa Indica Group]
Length = 470
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 72/136 (52%), Gaps = 18/136 (13%)
Query: 203 KGGTIIRALQSE-----AGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
+GG + SE G VG E ERLI V++ E P+ SP +A++L+ S
Sbjct: 194 RGGIFSVCVNSEVQTGACGQVKEVGKNASE--ERLIVVSSQEIPDDPVSPTIEALILLHS 251
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD- 316
++ + N L RLVV SN+VGC+LG+GG +I+EMR+ TG IR+ S
Sbjct: 252 KVST--------LAENHQL--TTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRVYSKA 301
Query: 317 QLLKCISENDRVVQIS 332
K +S ++ +VQ S
Sbjct: 302 DKPKYLSFDEELVQAS 317
>gi|167614344|gb|ABZ89744.1| IGF-II mRNA-binding protein 2a [Danio rerio]
Length = 607
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ +R++ +T P
Sbjct: 433 EQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP--P 489
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F++ + + + + V S+ G ++GKGG ++
Sbjct: 490 EAQF----KAQGRIFGKLKEENF-----FTAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 540
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF-------SKVKDAVYNVTGRLRDNH 353
E++ +T + + DQ END V V+ISG F K+++ + V + H
Sbjct: 541 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHFFASQTAQRKIREIIQQVKQQ-EQKH 596
Query: 354 FSGTLNTARTR 364
G T R++
Sbjct: 597 QQGAPTTPRSK 607
>gi|198458337|ref|XP_002138531.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
gi|198136305|gb|EDY69089.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
Length = 505
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEDTVRILIPSSIAGAVIGKGGQHIQKMRTQYKAAVSVDDS--QGPERTIQISADI 74
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
+A + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 75 ----------EATLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ ++V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQAQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 429 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 488
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 489 AQYLLQ 494
>gi|195972875|ref|NP_001108030.2| insulin-like growth factor 2 mRNA-binding protein 2 [Danio rerio]
gi|124021198|gb|ABM88867.1| IGF2 mRNA-binding protein 2 [Danio rerio]
Length = 607
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 94/191 (49%), Gaps = 25/191 (13%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + A P+ +R++ +T P
Sbjct: 433 EQEVVY-LFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGP--P 489
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F++ + + + + V S+ G ++GKGG ++
Sbjct: 490 EAQF----KAQGRIFGKLKEENF-----FTAKEEVKLETHIKVPSSAAGRVIGKGGKTVN 540
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF-------SKVKDAVYNVTGRLRDNH 353
E++ +T + + DQ END V V+ISG F K+++ + V + H
Sbjct: 541 ELQNLTSAEVIVPRDQ---TPDENDEVFVKISGHFFASQTAQRKIREIIQQVKQQ-EQKH 596
Query: 354 FSGTLNTARTR 364
G T R++
Sbjct: 597 QQGAPTTPRSK 607
>gi|6006748|gb|AAF00596.1|AF142631_1 hnRNP K protein homolog [Drosophila melanogaster]
Length = 490
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 417 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 476
Query: 528 AQSLLQAFILT 538
AQ LLQ +++
Sbjct: 477 AQYLLQQRLVS 487
>gi|297605767|ref|NP_001057572.2| Os06g0342500 [Oryza sativa Japonica Group]
gi|255677019|dbj|BAF19486.2| Os06g0342500 [Oryza sativa Japonica Group]
Length = 96
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 52/74 (70%)
Query: 465 IVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDE 524
+VT +T+E+++P++ + S+ GS L ++ ++SGA V + + R + +++V ISGTP++
Sbjct: 15 LVTRSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQ 74
Query: 525 TQAAQSLLQAFILT 538
AQSLLQ FIL+
Sbjct: 75 ADKAQSLLQGFILS 88
>gi|148689196|gb|EDL21143.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689197|gb|EDL21144.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
gi|148689198|gb|EDL21145.1| poly(rC) binding protein 4, isoform CRA_a [Mus musculus]
Length = 244
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGS------T 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
TG +++ D L + +R V +SG + V + + ++H
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSGVPDAIILCVRQICAVILEHH 174
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFIL 537
+ A IL
Sbjct: 163 VRQICAVIL 171
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 10/87 (11%)
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQ 288
+ERLI V++ E P+ SP +A++L+ S K + N L RLVV SN+
Sbjct: 564 EERLIVVSSQEIPDDPVSPTIEALILLHS--------KASTLAENHQL--TTRLVVPSNK 613
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIIS 315
VGC+LG+GG +I+EMR+ TG IR+ S
Sbjct: 614 VGCILGEGGKVITEMRRRTGAEIRVYS 640
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536
ISGA+V +HE GS++ IV I G PD+ +AAQSLLQ FI
Sbjct: 894 ISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLLQGFI 933
>gi|225681071|gb|EEH19355.1| Poly(rC)-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 495
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 158/380 (41%), Gaps = 65/380 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 137 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 188
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 189 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 246
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 247 EASGARLNA-SDSCLPLSTE--RTLIILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 303
Query: 362 R-TRSTSSVLT-----ETSPY------SRLKDPASFGVH---SSVAVSHDFSQPPLTQGM 406
TRS + PY + P +F H + AVS P G
Sbjct: 304 YATRSGGPAGVVPGGMQVVPYIPQPAGGQYGHPDTFKRHQPQGTRAVSTGGYGVPYVHGQ 363
Query: 407 D----------HLGLS----HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
H G S ++ P P + A + VH G SQ +
Sbjct: 364 PGQPQMPQQALHYGASSRPGYTGAGPHQPSPYGAPQPSQVH-------GAPSSQPV---- 412
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG+ G+ T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S
Sbjct: 413 GGVVPGA--------PVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSN 464
Query: 513 DRIVVISGTPDETQAAQSLL 532
+R+V I+GTP+ Q A +L
Sbjct: 465 ERLVTITGTPECNQMALYML 484
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + PE
Sbjct: 421 VTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGT--PECN- 477
Query: 246 SPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 478 ---QMALYMLYSRL 488
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G V ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 418 GAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 473
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 474 PECNQMALYMLYSRL 488
>gi|224116384|ref|XP_002317284.1| predicted protein [Populus trichocarpa]
gi|222860349|gb|EEE97896.1| predicted protein [Populus trichocarpa]
Length = 85
Score = 63.5 bits (153), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 49/69 (71%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
+T+E++VP N +G V G+ G+N+ +R+ISGA + + + DRI ISGT ++ +AA
Sbjct: 15 STLEMLVPANAVGKVMGKGGANIANIRKISGAMIEISDANSARGDRIARISGTLEQKRAA 74
Query: 529 QSLLQAFIL 537
++L+QAFI+
Sbjct: 75 ENLIQAFIM 83
>gi|296825084|ref|XP_002850758.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
gi|238838312|gb|EEQ27974.1| KH domain RNA-binding protein [Arthroderma otae CBS 113480]
Length = 367
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/363 (22%), Positives = 152/363 (41%), Gaps = 60/363 (16%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT
Sbjct: 40 DEEYAQSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT- 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
GP S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G
Sbjct: 99 --GPLQGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 154 LKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 210
Query: 358 ----LNTARTRSTSSVLTETSPYSRLKDPASFG---VHSSVAVSHDFSQPPLTQGMDHLG 410
N A S S + S +P+ G ++ DFS P + G
Sbjct: 211 GTVLYNPAVRASVGSGPGQASAAG--SNPSYGGNSRSYNRTGNGADFSDHPGSYGR---- 264
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
RG++D + G+ L + + T
Sbjct: 265 ------------------------RGNND----------NPNRGIPLVTEDGEEVQTQN- 289
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQ 529
I +P +++G + G G+ + +R+ SGA++ I P + +R+ I G+ + A
Sbjct: 290 --ISIPSDMVGCIIGRGGTKISEIRRSSGARISIAKAPHDDTGERMFTIMGSAQANEKAL 347
Query: 530 SLL 532
LL
Sbjct: 348 YLL 350
>gi|50311087|ref|XP_455567.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644703|emb|CAG98275.1| KLLA0F10703p [Kluyveromyces lactis]
Length = 417
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/362 (19%), Positives = 151/362 (41%), Gaps = 40/362 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+LC + V+G G + ++SE I+V + ER+I V
Sbjct: 67 INLRMLCLMKQASKVVGGKGERVNRIKSETNTRINVSDNINGVMERVIFVRGK------- 119
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ V F +++ + + D S+ + L + L++ + +GC++G+ G+ + E+
Sbjct: 120 ---CEEVARAFGKIVRAINNESDDDSNERSLPLVVNLLIPHHFMGCIIGRQGSRLHEIED 176
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
++ + QL NDR++ ++G + A Y + + +N ++ ++
Sbjct: 177 LSAARLMASPQQLPMS---NDRILSLTGVADAIHIATYYIGQTILENE-------SKLKN 226
Query: 366 TSSVLTETSPYSR--LKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKL 423
SV P + + + ++S A ++ P+ H +D K
Sbjct: 227 KKSVFYHPGPMHSVLVNNYQMYMIYSGGAPTNPQDITPMVAPHQEHHQYHPMD----KKT 282
Query: 424 WTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE-------LGSGSKSAIVTNTTV--EII 474
+T V S G Q L + ++ + +S I + + E+
Sbjct: 283 MNRRTKPPV-----SKYPIGPQQSLQPYTDMVDSCKHVKIISQLQQSPISPHLVLPQEVF 337
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534
+ +G+V G+ G N+ +++Q +G + +++P G +R +V+ GTP TQ A ++
Sbjct: 338 IDNKFVGNVIGKGGKNIQQIKQSTGCMIKINDPVEGLDERKLVLIGTPLATQTAIMMINN 397
Query: 535 FI 536
I
Sbjct: 398 RI 399
>gi|357465709|ref|XP_003603139.1| Far upstream element-binding protein [Medicago truncatula]
gi|355492187|gb|AES73390.1| Far upstream element-binding protein [Medicago truncatula]
Length = 605
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 50/281 (17%)
Query: 161 VSAVRPLSLESDRVATLDARTQ-------------QQEVSF----RILCSNDKVGAVIGK 203
V+ PLS + R + + Q QQ S+ +I N +VG +IGK
Sbjct: 44 VTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGK 103
Query: 204 GGTIIRALQSEAGAFISVGATM---PECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I+ LQ ++GA I V M P R++ + + P++ S A L+ L
Sbjct: 104 GGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGT--PDAVSS----AEKLINEVLA 157
Query: 261 EGTSEKGLDFSSNKGLLVNAR-----LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
E +E G + ++ + + + +N+VG ++GKGG I M+ TG I++I
Sbjct: 158 E--AEAGASVGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQVIP 215
Query: 316 DQLLKCISENDRVVQISGEFSKVKDAVYNV----TG--RLRDNHFSG--TLNTARTRSTS 367
+ +R ++I G +++ A V TG RLR++ SG T ++R S
Sbjct: 216 LHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPS 275
Query: 368 SVLTETSPYSRLKDPASFGV-----HSSVAVSHDFSQPPLT 403
S +P + A +G +S + ++ QPP T
Sbjct: 276 SWAPPAAPVQQ----AGYGYGQPGSYSGPSPQYNTPQPPYT 312
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 448 LSHHKGGLELGSGSKSAIVTNTTVEII--VPENVIGSVYGENGSNLLRLRQISGAKVIV- 504
L+ + G +G G++ + + E + +P N +G + G+ G + ++ +GA++ V
Sbjct: 156 LAEAEAGASVG-GTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQVI 214
Query: 505 --HEPRLG-STDRIVVISGTPDETQAAQSLLQAFILTG 539
H P ST+R + I GTPD+ ++A+ L+ ILTG
Sbjct: 215 PLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQ-ILTG 251
>gi|281363839|ref|NP_001163216.1| bancal, isoform E [Drosophila melanogaster]
gi|272432584|gb|ACZ94488.1| bancal, isoform E [Drosophila melanogaster]
Length = 493
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 479
Query: 528 AQSLLQAFILT 538
AQ LLQ +++
Sbjct: 480 AQYLLQQRLVS 490
>gi|302766557|ref|XP_002966699.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
gi|300166119|gb|EFJ32726.1| hypothetical protein SELMODRAFT_85231 [Selaginella moellendorffii]
Length = 324
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 91/353 (25%), Positives = 148/353 (41%), Gaps = 84/353 (23%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPES 243
+ R L +N G+VIGKGG+ I Q+++GA I + P +R+ ++ S
Sbjct: 16 NLRFLVTNTAAGSVIGKGGSTISDFQAQSGARIQLSRNHEYFPGTSDRVAVLSGS----- 70
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
+ A L+ S++I+ D + + + +L+V G ++GKGG+ I +
Sbjct: 71 -LADVLTAFQLIISKIIK-------DDNQDDTKSIQVKLLVPKTVCGAIIGKGGSNIKKF 122
Query: 304 RKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTAR 362
+ + SI++ S DQLL + DR+V I G ++ AV + +L T ++
Sbjct: 123 VEDSQASIKLSSQDQLLPGVI--DRIVTIGGNVDQIIKAVTLILTKL-------TEESSY 173
Query: 363 TRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPK 422
T +TS+ L P +R P SF V V H +SP
Sbjct: 174 TETTSTPL--VYPGTR---PTSFIVR---CVYH-----------------------ASPG 202
Query: 423 LWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGS 482
L Q L + G + A+ ++ T+ I P+ IG
Sbjct: 203 L----------------------QNLRRNGPGPPMPVAYVGALTSSVTIGI--PDEHIGF 238
Query: 483 VYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLL 532
+ G G L L+Q SGAK+ V + G+ R V + G+ + QAAQ LL
Sbjct: 239 ILGRAGKTLQELQQSSGAKIKVSDRGDFVTGTEYRKVTMIGSGEAIQAAQFLL 291
>gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster]
gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster]
gi|261338783|gb|ACX70073.1| RE05515p [Drosophila melanogaster]
Length = 502
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 23 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 79
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 80 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 122
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 123 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 175
Query: 355 SGTL 358
G +
Sbjct: 176 KGAI 179
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 426 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 485
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 486 AQYLLQ 491
>gi|221060388|ref|XP_002260839.1| RNA-binding protein [Plasmodium knowlesi strain H]
gi|193810913|emb|CAQ42811.1| RNA-binding protein, putative [Plasmodium knowlesi strain H]
Length = 334
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 147/355 (41%), Gaps = 71/355 (20%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
++L +N G+VIGK G+II +++++ G + + T P ER++ + +
Sbjct: 20 KMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQ------ 73
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A++++ ++ + T + D + N R+V+ + ++GKGG I +++
Sbjct: 74 EQINNALLIILDKIRQITVQSFQDKQNMNTVPKYTCRIVIPKSAASAIIGKGGQQIKQLQ 133
Query: 305 KVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DNHFSGTLNTA 361
TG I+I S D L N+R++ I G F + D VT ++ D + LN
Sbjct: 134 DSTGAKIQISSREDGL------NERIISIIGPFESISDTAIKVTNSIQNDPNLKDLLNVI 187
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDF-SQPPLTQGMDHLGLSHSLDCPSS 420
+ T+ ++ ++S +F +Q PL + P
Sbjct: 188 YNKDTN-------------------MNGRSSLSQNFVNQVPL----------NGYVVPQQ 218
Query: 421 PKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVI 480
++ + V++ S L H S+ + I +P+ I
Sbjct: 219 YGVFQHEQYMDVNMMNS----------LMRH---------SRDLFNLPCEISIQIPDEFI 259
Query: 481 GSVYGENGSNLLRLRQISGAKV-IVHEPRL--GSTDRIVVISGTPDETQAAQSLL 532
GSV G+NGS L + +GA++ I + L G+ DR V I GT A LL
Sbjct: 260 GSVIGKNGSRLTNIMNSTGAQIRISRKGELIPGTADRKVRIMGTVAAVHGAHVLL 314
>gi|395536709|ref|XP_003770354.1| PREDICTED: uncharacterized protein LOC100914843 [Sarcophilus
harrisii]
Length = 1087
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-PECDERLITVTASEGP 241
+QEV + + VGA+IGK G I+ L AGA I + PE ER++ +T P
Sbjct: 909 EQEVVY-LFIPTQAVGAIIGKKGHHIKQLARFAGASIKIAPPEGPEASERMVIITGP--P 965
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 966 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLKAHIRVPSSAAGRVIGKGGKTVN 1016
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E+ +T + + DQ END V V+I G F
Sbjct: 1017 ELHNLTSAEVIVPRDQ---TPDENDEVIVKIIGHF 1048
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 24/179 (13%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
A+ +Q + RIL VGA+IGK G I+ L + + + + GA+ E+
Sbjct: 526 AQAKQLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAS-----EKP 580
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
+T+ AS PE S A + ++ + + E K ++ + +++ ++ VG L
Sbjct: 581 VTIHAS--PEG-ASEACRMILEIMQK--EADETKAVE-------EIPLKILAHNSLVGRL 628
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GK G + ++ + TGT I I Q L I +R + + G A + +LR+
Sbjct: 629 IGKEGRNLKKIEQDTGTKITISPLQDL-TIYNPERTITVKGPIEACSSAEVEIMRKLRE 686
>gi|452837822|gb|EME39763.1| hypothetical protein DOTSEDRAFT_74610 [Dothistroma septosporum
NZE10]
Length = 490
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 152/371 (40%), Gaps = 36/371 (9%)
Query: 182 QQQEVSF---RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
QQ E S+ R + S+ + VIGKGG + ++ AGA +V ER++TV+
Sbjct: 119 QQDESSWLHVRAIISSAEAATVIGKGGENVTQIRRMAGAKCTVSEYTRGAVERILTVSG- 177
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGCLLGKGG 297
AV F +I +++ LD S+ + RL++ +G ++GK G
Sbjct: 178 ---------LVDAVAKAFGLIIRTLNQEPLDQPSTPQSKTYPLRLLIPHILIGSIIGKQG 228
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HF 354
I E+++ +G + S+ L +E VV G V A Y V L + F
Sbjct: 229 VRIREIQEASGARLNA-SESCLPLSTERSLVV--LGVADAVHIATYYVGSTLVEQLTERF 285
Query: 355 SGTLNT------ARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
G + + + PY G H + +QP T +
Sbjct: 286 GGPAASNYAGRHGGPQGVVPGGMQVVPYVPQHAGGQMG-HPDYNRNKQHAQPQRTPAQPY 344
Query: 409 LGLSHSL-DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
G + P P+ A G + VG G Q + + +G +
Sbjct: 345 GGQQYMQGQTPLPPQ--QAPMGYGAGSPRAPYVGAGPQQPQPYGHAAPQAHAGPPQQPMQ 402
Query: 468 NT------TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ + +R+V I+GT
Sbjct: 403 GMVPGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGT 462
Query: 522 PDETQAAQSLL 532
+ Q A +L
Sbjct: 463 QECNQMALYML 473
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 408 QPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQ--EC 465
Query: 244 RYSPAQKAVVLVFSRLIE 261
Q A+ +++SRL E
Sbjct: 466 N----QMALYMLYSRLGE 479
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 407 GQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNNNERLVTITGT 462
Query: 335 FSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ A+Y + RL ++ S N+A R
Sbjct: 463 QECNQMALYMLYSRLGES--SKNSNSAMPR 490
>gi|432873594|ref|XP_004072294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Oryzias
latipes]
Length = 433
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + + +R + V RIL + GAVIGKGG I+AL+S+ A +S
Sbjct: 18 TNGKRPAEDADEHKSFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRSDYNASVS 77
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++++A + ++ + L E G+DF
Sbjct: 78 VPDSSGP---ERILSISAD------IETVGEILLKIIPTLEEYQQYNGMDFD------CE 122
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
RL++ + G ++G G I E+R+ T TSI++ + C DRVV + G+ +V
Sbjct: 123 LRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQEC---CPQSTDRVVLVGGKSERVV 179
Query: 340 DAV 342
+ V
Sbjct: 180 ECV 182
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 6/103 (5%)
Query: 431 GVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
G ++ G D W S+ GG S ++T ++ +P+++ GS+ G+ G
Sbjct: 326 GDNMSGGYDNSSSWD---SYQSGGRGSYSDMGGPVIT---TQVTIPKDLAGSIIGKGGQR 379
Query: 491 LLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+ ++R SGA + + EP GS DRI+ I+GT D+ Q AQ LLQ
Sbjct: 380 IKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQ 422
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 350 YSDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 405
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+G ++++A Y + ++ +SG L
Sbjct: 406 TITGTQDQIQNAQYLLQNSVK--QYSGHL 432
Score = 38.9 bits (89), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 358 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 411
>gi|331232797|ref|XP_003329060.1| hypothetical protein PGTG_10800 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308050|gb|EFP84641.1| hypothetical protein PGTG_10800 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 378
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q + R L +IGKGG I ++ ++GA ++ +P ER+++V GP
Sbjct: 104 QTIQMRALIVTQDASIIIGKGGRHINEVREKSGARATISEAVPGNAERILSVA---GPLD 160
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISE 302
S KA L+ R+ +++ D S G V R +V ++++G ++GK G+ I E
Sbjct: 161 AVS---KAFGLIVRRI----NDEPFDVPSVPGSRAVTIRFIVPNSRMGSVIGKAGSKIKE 213
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
++ ++G ++ S+ LL +E RV+ ISG V AVY V L DN NT+
Sbjct: 214 IQDMSGARVQ-ASEALLPGSTE--RVLSISGVADAVHIAVYYVGMILVDNQERMPANTS 269
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ IVP + +GSV G+ GS + ++ +SGA+V E L GST+R++ ISG D A
Sbjct: 190 TIRFIVPNSRMGSVIGKAGSKIKEIQDMSGARVQASEALLPGSTERVLSISGVADAVHIA 249
>gi|358379880|gb|EHK17559.1| hypothetical protein TRIVIDRAFT_231881 [Trichoderma virens Gv29-8]
Length = 477
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 94/376 (25%), Positives = 156/376 (41%), Gaps = 57/376 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 116 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------- 167
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-RLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L+ +S RL++ +G ++GKGG+ I E++
Sbjct: 168 --IVDAVAKAFGLIIRTLNNEPLNEASTASSKTYPLRLLIPHILIGSIIGKGGSRIREIQ 225
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L SE VV G V A Y V L + F G +A
Sbjct: 226 EASGARLNA-SDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASA 282
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPAS--------FGVHSSVAVSHDFSQPPLTQGMD 407
TRS + V + + PYS PAS +G H H P Q
Sbjct: 283 YATRSGAPVGSIPGGMQVVPYS--PQPASGHYGRAENYGRHQERR-PHHMPPAPYPQPYP 339
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDV-----------GRGWSQGLSHHKGGLE 456
H G H P+ P + A + + V G QG H G
Sbjct: 340 H-GAPHG--APAIPMQYGAGQPAAAYGAAAPHVQPHMAPHTGPQPHGAPQGQPMHAG--M 394
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G+G T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V
Sbjct: 395 PGTGP-------ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLV 447
Query: 517 VISGTPDETQAAQSLL 532
I+GT + + A +L
Sbjct: 448 TITGTEECNRMALYML 463
>gi|45552765|ref|NP_995907.1| bancal, isoform A [Drosophila melanogaster]
gi|442624312|ref|NP_001261102.1| bancal, isoform F [Drosophila melanogaster]
gi|21626883|gb|AAF57450.2| bancal, isoform A [Drosophila melanogaster]
gi|189182182|gb|ACD81867.1| LP16172p [Drosophila melanogaster]
gi|440214543|gb|AGB93634.1| bancal, isoform F [Drosophila melanogaster]
Length = 496
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 479
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 480 AQYLLQ 485
>gi|355733298|gb|AES10985.1| poly binding protein 2 [Mustela putorius furo]
Length = 148
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 8/131 (6%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ E+GA I++ + C ER+IT+ GP +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI--SEGNCPERIITLA---GPTNAI 80
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ +L E S + ++ V RLVV ++Q G L+GKGG I E+R+
Sbjct: 81 F---KAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRE 137
Query: 306 VTGTSIRIISD 316
TG +++ D
Sbjct: 138 STGAQVQVAGD 148
>gi|345497208|ref|XP_001599286.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Nasonia vitripennis]
Length = 643
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 25/175 (14%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD---- 229
V T DA QE +F + N+ VGA+IG G+ IR + +GA + + E D
Sbjct: 399 VLTSDA----QETTF-LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPL--ESDKPAE 451
Query: 230 ---ERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVAS 286
ER +T+ S PES++ KA L+F ++ E+G S + + + ++V S
Sbjct: 452 QQTERKVTIVGS--PESQW----KAQYLIFEKM----REEGF-VSGTEDVRLTVEILVPS 500
Query: 287 NQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
QVG ++GKGG + E+++VTG+ I++ Q ++ + V I G F V+ A
Sbjct: 501 AQVGRIIGKGGQNVRELQRVTGSVIKLSEQQATPPTADEETTVHIIGPFFSVQSA 555
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 95/411 (23%), Positives = 168/411 (40%), Gaps = 75/411 (18%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDE 230
L +Q + RIL +D VGA+IG+ G+ IR + A + V G+ E
Sbjct: 179 LPGAGRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQMTRARVDVHRKDNLGSL-----E 233
Query: 231 RLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
+ IT+ + PE+ + +K + ++ ++NKG + +++ +N +G
Sbjct: 234 KAITIYGN--PENCTNACKKILEVMHQEA----------SNTNKG-EITLKILAHNNLIG 280
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GKGG I + + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 281 RIIGKGGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGSIENMSKAEAMISNKLR 339
Query: 351 DNH-------------FSGTLNTARTRSTSSVLTETSPYSRLKDPASF----------GV 387
++ F G A + S P PA + GV
Sbjct: 340 QSYENDLQAMAPQSMMFPGLHPMAMMSTASMGYNSRGPALYGTGPAPYPYQSNLTPQQGV 399
Query: 388 HSSVAVSHDFSQPPL--------TQGMDHL-------GLSHSLDCPSSPKLWTAQTVTGV 432
+S A F P T+G H+ G S + S K QT V
Sbjct: 400 LTSDAQETTFLYIPNNSVGAIIGTKG-SHIRNIIRFSGASVKIAPLESDKPAEQQTERKV 458
Query: 433 HLRGSSDVGRGW-SQGLSHHKGGLE-LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSN 490
+ GS + W +Q L K E SG++ +T VEI+VP +G + G+ G N
Sbjct: 459 TIVGSPE--SQWKAQYLIFEKMREEGFVSGTEDVRLT---VEILVPSAQVGRIIGKGGQN 513
Query: 491 LLRLRQISGAKVIVHE----PRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
+ L++++G+ + + E P + V I G Q+AQ ++A ++
Sbjct: 514 VRELQRVTGSVIKLSEQQATPPTADEETTVHIIGPFFSVQSAQRRIRAMVV 564
>gi|387915114|gb|AFK11166.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 436
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R Q V R+L + GAVIGKGG I++L+++ A +SV +
Sbjct: 27 RPAEDHDEEQAFKRSRNNDQCVELRLLLQSKNAGAVIGKGGKNIKSLRTDYNASVSVPDS 86
Query: 224 TMPECDERLITVTAS----EGPESRYSPAQKAVVLV-FSRLIEGTSE-KGLDFSSNKGLL 277
+ P ER++++ A S+ P + V V F L E KG DF
Sbjct: 87 SGP---ERILSINADIETIGDILSKIIPTLEEVRCVHFHHLQESYQHYKGKDFD------ 137
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
R++V +Q G ++G G I E+R+ T T+I++ + C DRVV + G+ +
Sbjct: 138 CELRMLVHQSQAGSIIGVKGVKIKELRESTQTTIKLFQEC---CPHSTDRVVLLGGKPDR 194
Query: 338 VKDAVYNVTGRLRDNHFSG 356
V + + + G L ++ G
Sbjct: 195 VVECIKIIMGLLSESPVKG 213
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 363 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 422
Query: 530 SLLQ----AFILT 538
LLQ +F +T
Sbjct: 423 YLLQNSCSSFFMT 435
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 362 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 415
>gi|307189125|gb|EFN73581.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Camponotus
floridanus]
Length = 587
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N+ VGA+IG G+ IR + +GA + + + ER +T+ S
Sbjct: 364 QETTF-LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIIGS 422
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + + ++V S QVG ++GKGG
Sbjct: 423 --PESQW----KAQYLIFEKM----REEGY-VAGTEDVRLTIEILVPSTQVGRIIGKGGQ 471
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q +E + V I G F V+ A
Sbjct: 472 NVRELQRVTGSVIKLSEQQATPPSAEEETTVHIIGPFFSVQSA 514
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 81/367 (22%), Positives = 149/367 (40%), Gaps = 82/367 (22%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDE 230
L +Q + RIL +D VGA+IG+ G+ IR + + A + +VG+ E
Sbjct: 138 LPGSGRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQVSRARVDVHRKDNVGSL-----E 192
Query: 231 RLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
+ IT+ + PE+ + +K + ++ S+NKG + +++ +N +G
Sbjct: 193 KAITIYGN--PENCTNACKKILDVMQQEAA----------STNKG-EITLKILAHNNLIG 239
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350
++GKGG I + + T + I + S + + +R++ + G + A ++ +LR
Sbjct: 240 RIIGKGGNTIKRIMQDTDSKITVSSINDINSFNL-ERIITVKGTIENMSKAESMISSKLR 298
Query: 351 DNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLG 410
+S + L +P S + G+H P+ M G
Sbjct: 299 -------------QSYENDLQAMAPQSMMFP----GLH------------PMAM-MSTAG 328
Query: 411 LSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT 470
+ +S P L GS + L +G A T T
Sbjct: 329 MGYSSRGPG--------------LYGSGPAPYPYQSSLPTQQG--------VPASDTQET 366
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDET 525
+ +P N +G++ G GS++ + + SGA V + +P T+R V I G+P+
Sbjct: 367 TFLYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIIGSPESQ 426
Query: 526 QAAQSLL 532
AQ L+
Sbjct: 427 WKAQYLI 433
>gi|322792902|gb|EFZ16735.1| hypothetical protein SINV_14612 [Solenopsis invicta]
Length = 555
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N+ VGA+IG G+ IR + +GA + + + ER +T+ S
Sbjct: 329 QETTF-LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGS 387
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + + ++V S QVG ++GKGG
Sbjct: 388 --PESQW----KAQYLIFEKM----REEGY-VAGTEDVRLTIEILVPSTQVGRIIGKGGQ 436
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q +E + V I G F V+ A
Sbjct: 437 NVRELQRVTGSVIKLSEQQATPPSAEEETTVHIIGPFFSVQSA 479
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 147/362 (40%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL +D VGA+IG+ GT IR + A + +VG+ E+ IT+
Sbjct: 108 RQTDFPLRILVQSDMVGAIIGRQGTTIRQITQLTRARVDVHRKDNVGSL-----EKAITI 162
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + A K ++ V + T NKG + +++ +N +G ++GK
Sbjct: 163 YGN--PEN-CTNACKKILEVMQQEANNT---------NKG-EITLKILAHNNLIGRIIGK 209
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GG I + + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 210 GGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGSIDNMSKAESMISSKLR----- 263
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S + G+H P+ M G+ +S
Sbjct: 264 --------QSYENDLQAMAPQSMMFP----GLH------------PMAM-MSTAGMGYSS 298
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L GS + L +G A T T + +
Sbjct: 299 RGPG--------------LYGSGPAPYPYQSSLPTQQG--------VPASDTQETTFLYI 336
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P N +G++ G GS++ + + SGA V + +P T+R V I G+P+ AQ
Sbjct: 337 PNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPESQWKAQY 396
Query: 531 LL 532
L+
Sbjct: 397 LI 398
>gi|296081618|emb|CBI20623.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I V M P RL+ + G
Sbjct: 134 QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRLVELM---G 190
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV--VASNQVGCLLGKGGT 298
+ + A++ + V S G S G+ G + + V V +N+VG ++GKGG
Sbjct: 191 TPDQIAKAEQLINDVLSEAEAGGS--GIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGE 248
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
I M+ TG I++I L + +R VQI G +++ A
Sbjct: 249 TIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQIESA 291
>gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex
echinatior]
Length = 568
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N+ VGA+IG G+ IR + +GA + + + ER +T+ S
Sbjct: 338 QETTF-LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGS 396
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + + ++V S QVG ++GKGG
Sbjct: 397 --PESQW----KAQYLIFEKM----REEGY-VAGTEDVRLTIEILVPSTQVGRIIGKGGQ 445
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q +E + V I G F V+ A
Sbjct: 446 NVRELQRVTGSVIKLSEQQATPPSAEEETTVHIIGPFFSVQSA 488
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 85/369 (23%), Positives = 149/369 (40%), Gaps = 82/369 (22%)
Query: 175 ATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPEC 228
A L +Q + RIL +D VGA+IG+ G+ IR + A + +VG+
Sbjct: 110 AGLPGSGRQTDFPLRILVQSDMVGAIIGRQGSTIRQITQMTRARVDVHRKDNVGSL---- 165
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQ 288
E+ IT+ + PE+ + A K ++ V + T NKG + +++ +N
Sbjct: 166 -EKAITIYGN--PEN-CTNACKKILEVMQQEANNT---------NKG-EITLKILAHNNL 211
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
+G ++GKGG I + + T T I + S + + +R++ + G + A ++ +
Sbjct: 212 IGRIIGKGGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGSIDNMSKAESMISSK 270
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
LR +S + L +P S + G+H P+ M
Sbjct: 271 LR-------------QSYENDLQAMAPQSMMFP----GLH------------PMAM-MST 300
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
G+ +S P L GS + L +G A T
Sbjct: 301 AGMGYSSRGPG--------------LYGSGPAPYPYQSSLPTQQG--------VPASDTQ 338
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPD 523
T + +P N +G++ G GS++ + + SGA V + +P T+R V I G+P+
Sbjct: 339 ETTFLYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSPE 398
Query: 524 ETQAAQSLL 532
AQ L+
Sbjct: 399 SQWKAQYLI 407
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 173 RVATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
R+++ DA +++ ++ R+L +VG++IGK G ++ ++ ++ A I++
Sbjct: 37 RMSSSDAGLEEEPELSVTLTLRMLMQGKEVGSIIGKKGETVKRIREQSSARITISEG--S 94
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLV 283
C ER+ T+T S AV S + E +N G + V RLV
Sbjct: 95 CPERITTITGSTA----------AVFHAVSMIAFKLDEDLCSAPANGGTVSRPPVTLRLV 144
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ ++Q G L+GK GT I E+R+ TG +++ D L + +R V +SG V DA+
Sbjct: 145 IPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 196
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 282 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 341
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 342 ITACLETAKS 351
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 140 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 199
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 200 VRQICAVILESP 211
>gi|307196422|gb|EFN78011.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Harpegnathos
saltator]
Length = 647
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N+ VGA+IG G+ IR + +GA + + + ER +T+ S
Sbjct: 376 QETTF-LYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGS 434
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G S + + + ++V S QVG ++GKGG
Sbjct: 435 --PESQW----KAQYLIFEKM----REEGY-VSGTEDVRLTIEILVPSAQVGRIIGKGGQ 483
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q ++ + V I G F V+ A
Sbjct: 484 NVRELQRVTGSVIKLSEQQATPPSADEETTVHIIGPFFSVQSA 526
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 149/370 (40%), Gaps = 82/370 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL +D VGA+IG+ G+ IR + + A + +VG+ E+ IT+
Sbjct: 139 RQTDFPLRILVQSDMVGAIIGRQGSTIRQITQVSRARVDVHRKDNVGSL-----EKAITI 193
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN-------KGLLVNARLVVASNQ 288
G + A K ++ V + T+ KG D SN + +++ +N
Sbjct: 194 Y---GNPDNCTNACKKILEVMQQEANNTN-KGYDEGSNSDDHGAVNSYEITLKILAHNNL 249
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
+G ++GKGG I + + T T I + S + + +R++ + G + A ++ +
Sbjct: 250 IGRIIGKGGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGTIENMSKAESMISSK 308
Query: 349 LRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASF-GVHSSVAVSHDFSQPPLTQGMD 407
LR +S + L +P S + F G+H P+ M
Sbjct: 309 LR-------------QSYENDLQAMAPQSMM-----FPGLH------------PMAM-MS 337
Query: 408 HLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVT 467
G+ +S P L GS + L +G A T
Sbjct: 338 TAGMGYSSRGPG--------------LYGSGPAPYPYQSSLQTQQG--------VPASDT 375
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTP 522
T + +P N +G++ G GS++ + + SGA V + +P T+R V I G+P
Sbjct: 376 QETTFLYIPNNSVGAIIGTKGSHIRNIIRFSGASVKIAPLEQDKPAEQQTERKVTIVGSP 435
Query: 523 DETQAAQSLL 532
+ AQ L+
Sbjct: 436 ESQWKAQYLI 445
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH-EPRLGSTDRIV 516
GSG + T+ + I+V +++G++ G GS + ++ Q+S A+V VH + +GS ++ +
Sbjct: 136 GSGRQ----TDFPLRILVQSDMVGAIIGRQGSTIRQITQVSRARVDVHRKDNVGSLEKAI 191
Query: 517 VISGTPDE-TQAAQSLLQAF 535
I G PD T A + +L+
Sbjct: 192 TIYGNPDNCTNACKKILEVM 211
>gi|145238284|ref|XP_001391789.1| RNA-binding protein rnc1 [Aspergillus niger CBS 513.88]
gi|134076273|emb|CAL00757.1| unnamed protein product [Aspergillus niger]
gi|350635790|gb|EHA24151.1| hypothetical protein ASPNIDRAFT_209528 [Aspergillus niger ATCC
1015]
Length = 360
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 11/176 (6%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V +P +R++TVT GP
Sbjct: 40 QSMLTLRAIVSSKEAGIIIGKSGKNVADLRDETGVKAGVSKVVPGVHDRVLTVT---GP- 95
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+ +A LV L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 96 --LNGTARAYALVAKGLLEGAPQMGMGGIVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 152
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 153 HIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 205
>gi|194753778|ref|XP_001959187.1| GF12183 [Drosophila ananassae]
gi|190620485|gb|EDV36009.1| GF12183 [Drosophila ananassae]
Length = 511
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRTEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 RGAI 173
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 435 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 494
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 495 AQYLLQ 500
>gi|169617928|ref|XP_001802378.1| hypothetical protein SNOG_12147 [Phaeosphaeria nodorum SN15]
gi|111059439|gb|EAT80559.1| hypothetical protein SNOG_12147 [Phaeosphaeria nodorum SN15]
Length = 485
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 176/448 (39%), Gaps = 76/448 (16%)
Query: 129 AVSQEILPDLHVD-ILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVS 187
AV Q + D I+ S+L T P S S + RPLS S +V + +
Sbjct: 77 AVEQNGAEPVQTDTIVPDAPSILETQPIQSTSGANG-RPLS-HSQQV------DETNWLH 128
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
R + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 129 LRACIGTSEAATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQV-------- 180
Query: 248 AQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
AV F ++ +++ L+ S++ RL++ +G ++GK G I E+++
Sbjct: 181 --DAVSKAFGLIVRTLNQEDLEAPSTSTSKAYPMRLLIPHILIGSIIGKAGVRIREIQEA 238
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNT--- 360
+ + SD LL + +R + + G V AVY V L + F G +
Sbjct: 239 SNAKLNA-SDTLLP--NSGERSLVVLGVADAVHIAVYYVAQTLVEQLTERFGGPAASQYA 295
Query: 361 ARTRSTSSVLT---ETSPYS--------------RLKDPASFGVHSSV-AVSH------- 395
R+ ++V+ PY R ++P H A H
Sbjct: 296 TRSGMAANVVPGGMSVQPYVPQPAGGQYQQPNNFRRQEPQRTPAHGGYGAAPHMQPGAPV 355
Query: 396 ---DFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
+ QP + G G +H P P + G QG
Sbjct: 356 HPSPYGQPQMPYGAGSPGRAHYGGPPQQPGPY------------------GAPQGAPVPH 397
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG S T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP S
Sbjct: 398 GGPP-NQPPVSMPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSN 456
Query: 513 DRIVVISGTPDETQAAQSLLQAFILTGP 540
+R+V I+GT + Q A +L + + GP
Sbjct: 457 ERLVTITGTQECNQMALYMLYSRLGEGP 484
>gi|154319404|ref|XP_001559019.1| hypothetical protein BC1G_02183 [Botryotinia fuckeliana B05.10]
Length = 453
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 150/361 (41%), Gaps = 60/361 (16%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + ++ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 126 IHVRSVITSAEAATVIGKGGENVSLVRKLSGAKCTVSDYQKGAVERILTVSG-------- 177
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNK-GLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L+ S+ RL++ +G ++GKGG I E++
Sbjct: 178 --VVDAVAKAFGLIIRTLNNEPLEAPSDSTSKTYPLRLLIPHILIGSIIGKGGVRIKEIQ 235
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + + G V A Y V L + F G +A
Sbjct: 236 EASGARLNA-SDSYLPLSTE--RSLVVLGVADAVHIATYYVGSTLFEQLTERFGGPAASA 292
Query: 362 ---RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH-DFSQPPLTQGMDHLGLSHSLDC 417
R+ + V+ P +KD H SQ PL H+ H+
Sbjct: 293 YASRSGGPAGVVPGAMPNHTVKD------------RHLTNSQLPL-----HITGGHA--- 332
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSH-----HKGGLELGSGSKSAIVTNT-TV 471
SP + G VG Q H H G AI T
Sbjct: 333 --SPAVG-----------GYGGVGPQQPQQAGHAVPQPHGATGPQGQPMPGAIPGQPLTQ 379
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
+I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I+GT + Q A +
Sbjct: 380 QIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMALYM 439
Query: 532 L 532
L
Sbjct: 440 L 440
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + E
Sbjct: 375 QPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTA--EC 432
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 433 N----QMALYMLYSRL 444
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 374 GQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNSNERLVTITGT 429
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 430 AECNQMALYMLYSRL 444
>gi|325296771|ref|NP_001191623.1| pedal peptide 2 precursor [Aplysia californica]
gi|94434888|gb|ABF18973.1| pedal peptide 2 [Aplysia californica]
Length = 628
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 211 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 270
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 271 IKRPVDSIGSSFIKRGVDSIGSSFIKRPID 300
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 67 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 126
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 127 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 156
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 79 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 138
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 139 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 168
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 91 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 150
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 151 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 180
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 103 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 162
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 163 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 192
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 115 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 174
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 175 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 204
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 127 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 186
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 187 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 216
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 139 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 198
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 199 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 228
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 151 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 210
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 211 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 240
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 163 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 222
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 223 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 252
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 175 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 234
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 235 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 264
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 187 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 246
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++RP++
Sbjct: 247 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVD 276
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 235 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRGVDSIGSSF 294
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RP++ + + R ++S ++RP++
Sbjct: 295 IKRPIDTIGSSFIKRGVDSIGSSFIKRPVD 324
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+R VD+I I RP+DTI I+R ++++
Sbjct: 259 IKRPVDSIGSSFIKRPVDSIGSSFIKRGVDSIGSSFIKRPIDTIGSSFIKRGVDSIGSSF 318
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + + G E ++RP++
Sbjct: 319 IKRPVDSIGSSFIKKRRFGGENEFMKRPID 348
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 51/90 (56%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDT 74
I +P++ I RPV++I I+RPVD+I I RP+D+I I+R ++++
Sbjct: 199 IKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSF 258
Query: 75 IARPVEAVPQEILWRSLESGPQEILRRPLE 104
I RPV+++ + R ++S ++R ++
Sbjct: 259 IKRPVDSIGSSFIKRPVDSIGSSFIKRGVD 288
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 3 GSRFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHETIHRPLDTISHET 62
GS F + N+ + AF I RP++TI I++ +D+I I RP+D+I
Sbjct: 375 GSSFIKKNMDQA-------AF---IKRPIDTIGSSFIKKNIDSIGSSFIKRPVDSIGSSF 424
Query: 63 IRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLE 104
I+++++++ I RP++ + + +S G E+++RP++
Sbjct: 425 IKKNIDSIGSSFIKRPIDTIGSSFIKKSY--GQNEMMKRPVD 464
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 5 RFNEANLQETIHKPLEVAFQESICRPVETILHETIRRPVDTIPHE----------TIHRP 54
RF N E + +P++ I + V++I I+RP+DTI I RP
Sbjct: 335 RFGGEN--EFMKRPIDTIGSSFIKKNVDSIGSSFIKRPIDTIGSSFIKKNMDQAAFIKRP 392
Query: 55 LDTISHETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLE 104
+DTI I+++++++ I RPV+++ + ++++S ++RP++
Sbjct: 393 IDTIGSSFIKKNIDSIGSSFIKRPVDSIGSSFIKKNIDSIGSSFIKRPID 442
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 29 RPVETILHETIRRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDTIARPVEAVPQEILW 88
R V +I I+RPVD+I I RP+D+I I+R ++++ I RPV+++ +
Sbjct: 57 RHVGSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIK 116
Query: 89 RSLESGPQEILRRPLE 104
R ++S ++RP++
Sbjct: 117 RPVDSIGSSFIKRPVD 132
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 15 IHKPLEVAFQESICRPVETILHETIRRPVDTI------------PHETIHRPLDTISHET 62
I +P++ I R V++I I+RPVD+I +E + RP+DTI
Sbjct: 295 IKRPIDTIGSSFIKRGVDSIGSSFIKRPVDSIGSSFIKKRRFGGENEFMKRPIDTIGSSF 354
Query: 63 IRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEILRRPLE 104
I+++++++ I RP++ + + ++++ ++RP++
Sbjct: 355 IKKNVDSIGSSFIKRPIDTIGSSFIKKNMDQA--AFIKRPID 394
Score = 41.6 bits (96), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 40 RRPVDTIPHETIHRPLDTISHETIRRSLEAVPHDTIARPVEAVPQEILWRSLESGPQEIL 99
+R V +I I RP+D+I I+R ++++ I RPV+++ + R ++S +
Sbjct: 56 KRHVGSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFIKRPVDSIGSSFI 115
Query: 100 RRPLE 104
+RP++
Sbjct: 116 KRPVD 120
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R++ +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S G
Sbjct: 18 LTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTGA---- 71
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 72 --VFHAVSMIAFKLDEDLCTGPPNGGSISKPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + GS +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGSGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|195401727|ref|XP_002059464.1| GJ17213 [Drosophila virilis]
gi|194142470|gb|EDW58876.1| GJ17213 [Drosophila virilis]
Length = 511
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 36/186 (19%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +S V S+
Sbjct: 16 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVS--------------VDDSQ 61
Query: 240 GPES--RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
GPE + S + + + + +++ E+ +F + RL++ + GC++GKGG
Sbjct: 62 GPERTIQISTDIDSTLEIITEMLKYFEERDEEF--------DVRLLIHQSLAGCVIGKGG 113
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I E+R G + LK S DRVVQ G+ S+V DAV V RD
Sbjct: 114 QKIKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIDAVREVITLTRDT 166
Query: 353 HFSGTL 358
G +
Sbjct: 167 PIKGPI 172
Score = 45.8 bits (107), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+++ G++ G+ G + R+R S A + + EP GS DRI+ ISGTP + Q
Sbjct: 435 NNSTQVTIPKDLAGAIIGKGGGRIRRIRNESSAYITIDEPLPGSNDRIITISGTPKQIQM 494
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 495 AQYLLQ 500
>gi|452846671|gb|EME48603.1| hypothetical protein DOTSEDRAFT_67594 [Dothistroma septosporum
NZE10]
Length = 361
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/377 (21%), Positives = 158/377 (41%), Gaps = 70/377 (18%)
Query: 168 SLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE 227
+L +D + Q +++ R + ++ + G +IGK G + L+ + G V +P
Sbjct: 24 ALNTDDHPRTEEEYAQAQLTLRAIVTSKEAGVIIGKAGQNVADLREKTGVRAGVSKVVPG 83
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA-----RL 282
+R++TVT + + A LV L++G + G+ G++ N RL
Sbjct: 84 VHDRVLTVTGA------LTGIADAYGLVADSLVKGAPQMGMG-----GVVGNPNTHPIRL 132
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+++ NQ+G ++G+ G I +++ +G +R+++ + + S +R+V++ G ++ AV
Sbjct: 133 LISHNQMGTIIGRQGLKIKQIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPDGIQKAV 189
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLK--DPASFGVHSSVAVSHDFSQP 400
+ + L D+ R +VL SP R++ P G + V + P
Sbjct: 190 WEIGKCLVDDE---------QRGYGTVL--YSPAVRVQGGGPPLNGTGAPVGPGAGYGAP 238
Query: 401 ----PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLE 456
G D G + + P SP+ +G L
Sbjct: 239 RSYNRTGNGADFTGAAPA---PYSPR---------------------------RQEGPLP 268
Query: 457 LGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRI 515
+ I T I +P +++G + G GS + +R+ SGA++ I P + +R+
Sbjct: 269 TTNEDGEDIQTQN---ISIPADMVGCIIGRGGSKISEIRKSSGARISIAKAPHDETGERM 325
Query: 516 VVISGTPDETQAAQSLL 532
I+G + A LL
Sbjct: 326 FTITGGSAANEKALYLL 342
>gi|147844462|emb|CAN82085.1| hypothetical protein VITISV_031054 [Vitis vinifera]
Length = 473
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 149/360 (41%), Gaps = 55/360 (15%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV--GAT-----MPECDERLITV----- 235
FR++ KVG++IG+ G +I+ + E A I V GA + ++++++V
Sbjct: 80 FRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTSDRIGXMEKKMLSVLLKVV 139
Query: 236 ---------TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL--VNA--RL 282
+ E PE+ SPA AV+ VF R+ GL S GL VN
Sbjct: 140 DNLLEKVLISGREEPEAPLSPAMDAVIRVFKRVT------GLSESEGDGLFDQVNTGEHW 193
Query: 283 VVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ ++ V G+ + + + +++ + ++R+V++ GE KV+ A+
Sbjct: 194 CICASTVRSWFAHFGSKFQNLXAFSXEVYLLXQNEVPFYAAADERIVELQGEALKVQKAL 253
Query: 343 YNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPL 402
V G LR ++ R+ ++ +++ D + S + D+S P
Sbjct: 254 EAVVGHLRKFLVDHSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLPAK 313
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
+ + +L ++ P ++G+ SS +GR +
Sbjct: 314 RESL-YLDRETQMEHSGLPMYGQEHGLSGIR---SSGLGR------------------AG 351
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV-ISGT 521
+ IVT + +P + + G G+N+ +R+ SGA + V E R G D I V I GT
Sbjct: 352 APIVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESR-GLPDEITVEIKGT 410
>gi|427784321|gb|JAA57612.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Rhipicephalus
pulchellus]
Length = 334
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPES 243
V R L + GA+IGKGG+ I +L+ E A ISV P+C ER++++ A
Sbjct: 38 VDVRFLLQSRNAGAIIGKGGSNINSLRKEFKASISV----PDCPGPERILSIVAD----- 88
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSS----NKGLLVNARLVVASNQVGCLLGKGGTI 299
+ + +I ++ + F+ N G RL++ + GC++G+ G
Sbjct: 89 -----LDTLGEILLNIIPKLDDRSMQFAQHTGQNGGSESEMRLLMHQSHAGCIIGRAGCR 143
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
I E+R+ TG +I++ C +R+V+++G S V D + +
Sbjct: 144 IKELRESTGANIKVHGSC---CPGSTERIVKVTGSPSVVVDCIKQIC 187
>gi|295673384|ref|XP_002797238.1| Poly(rC)-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282610|gb|EEH38176.1| Poly(rC)-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 495
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 93/380 (24%), Positives = 157/380 (41%), Gaps = 65/380 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + IGKGG + ++ +GA +V ER++TV+
Sbjct: 137 IHIRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 188
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 189 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHLLIGSIIGKSGVRIREIQ 246
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 247 EASGARLNA-SDSCLPLSTE--RTLIILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 303
Query: 362 R-TRSTSSVLT-----ETSPY------SRLKDPASFGVH---SSVAVSHDFSQPPLTQGM 406
TRS + PY + P +F H + AVS P G
Sbjct: 304 YATRSGGPAGVVPGGMQVVPYIPQPAGGQYGHPDTFKRHQPQGTRAVSTGGYGVPYVHGQ 363
Query: 407 D----------HLGLS----HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHK 452
H G S ++ P P + A VH G SQ +
Sbjct: 364 PGQPQMPQQALHYGASSRPGYTGAGPHQPSPYGAPQPGQVH-------GAPSSQPV---- 412
Query: 453 GGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
GG+ G+ T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S
Sbjct: 413 GGVVPGA--------PVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSN 464
Query: 513 DRIVVISGTPDETQAAQSLL 532
+R+V I+GTP+ Q A +L
Sbjct: 465 ERLVTITGTPECNQMALYML 484
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V+ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T + PE
Sbjct: 421 VTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGT--PECN- 477
Query: 246 SPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 478 ---QMALYMLYSRL 488
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G V ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 418 GAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 473
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 474 PECNQMALYMLYSRL 488
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|358400710|gb|EHK50036.1| hypothetical protein TRIATDRAFT_51252 [Trichoderma atroviride IMI
206040]
Length = 477
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 156/375 (41%), Gaps = 57/375 (15%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 118 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------- 169
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L + S+ RL++ +G ++GKGG+ I E++
Sbjct: 170 --IVDAVAKAFGLIIRTLNNEPLSEASTASSKTYPLRLLIPHILIGSIIGKGGSRIREIQ 227
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L SE VV G V A Y V L + F G +A
Sbjct: 228 EASGARLN-ASDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPGASA 284
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPAS--------FGVHSSVAVSHDFSQPPLTQGMD 407
TRS + V + + PYS PAS +G H H P Q
Sbjct: 285 YATRSGAPVGSIPGGMQVVPYS--PQPASGHYGRAENYGRHQE-RRPHHMPPAPYPQPYA 341
Query: 408 HLGLSHSLDCPSSPKLW-----TAQTVTGVHLRG-----SSDVGRGWSQGLSHHKGGLEL 457
H G H P+ P + A H++ + G QG H G +
Sbjct: 342 H-GAPHG--APAIPMQYGAGQPAAYGAAAPHVQPHMAPHTGPQAHGAPQGQPMHAG---M 395
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
G T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V
Sbjct: 396 PGGP-------ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVT 448
Query: 518 ISGTPDETQAAQSLL 532
I+GT + + A +L
Sbjct: 449 ITGTEECNRMALYML 463
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E
Sbjct: 400 ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTE------ 453
Query: 246 SPAQKAVVLVFSRLIE 261
+ A+ +++SRL E
Sbjct: 454 ECNRMALYMLYSRLGE 469
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 397 GGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQ----DNSNERLVTITGT 452
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 453 EECNRMALYMLYSRL 467
>gi|410925644|ref|XP_003976290.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Takifugu rubripes]
Length = 430
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V RIL + GAVIGKGG I+AL+++ A +S
Sbjct: 19 ANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVS 78
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++V AS K ++ + L E G+DF S LL++
Sbjct: 79 VPDSSGP---ERILSVNAS------IDTIGKILLKIIPTLEEYQHYSGIDFDSELRLLIH 129
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L G ++G G I E+R+ T T+I++ + C DRVV + G+ +V
Sbjct: 130 QSL------AGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVLVGGKPERVI 180
Query: 340 DAV 342
+ +
Sbjct: 181 ECI 183
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R GA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 356 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 415
Query: 530 SLLQ 533
LLQ
Sbjct: 416 YLLQ 419
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R G SI+I D+ L+ DR++
Sbjct: 347 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI--DEPLE--GSEDRII 402
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+G ++++A Y + +R +SG
Sbjct: 403 TITGTQDQIQNAQYLLQNSVR--QYSGRF 429
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V LD TQ F L ND +G VIG+ G+ I ++ +GA I +G ER +
Sbjct: 232 VPGLDPSTQTSSQEF--LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 234 TVTAS 238
T+T S
Sbjct: 290 TITGS 294
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILT 538
+ A + T
Sbjct: 305 ITACLET 311
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V LD TQ F L ND +G VIG+ G+ I ++ +GA I +G ER +
Sbjct: 232 VPGLDPSTQTSSQEF--LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 234 TVTAS 238
T+T S
Sbjct: 290 TITGS 294
>gi|225429462|ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera]
Length = 690
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 80/168 (47%), Gaps = 20/168 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I V M P RL+ + +
Sbjct: 134 QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRLVELMGT-- 191
Query: 241 PESRYSPAQ--KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNAR-----LVVASNQVGCLL 293
P Q KA L+ L E +E G ++ L A + V +N+VG ++
Sbjct: 192 ------PDQIAKAEQLINDVLSE--AEAGGSGIVSRRLTGQAGSEQFVMKVPNNKVGLII 243
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
GKGG I M+ TG I++I L + +R VQI G +++ A
Sbjct: 244 GKGGETIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQIESA 291
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|355709455|gb|AES03597.1| poly binding protein 4 [Mustela putorius furo]
Length = 206
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 22/185 (11%)
Query: 163 AVRPLSLESDRVATLDARTQQQE-----VSFRILCSNDKVGAVIGKGGTIIRALQSEAGA 217
AV P L DR++ DA +++ ++ R+L +VG++IGK G ++ ++ ++ A
Sbjct: 1 AVAPAPL--DRMSGSDAGLEEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSA 58
Query: 218 FISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL 277
I++ C ER+ T+T S + AV ++ +L E + +
Sbjct: 59 RITISEG--SCPERITTITGS------TAAVFHAVSMIAFKLDEDLCAAPANGGNVSRPP 110
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
V RLV+ ++Q G L+GK GT I E+R+ TG +++ D L + +R V +SG
Sbjct: 111 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLP---NSTERAVTVSG---- 163
Query: 338 VKDAV 342
V DA+
Sbjct: 164 VPDAI 168
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 112 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 171
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 172 VRQICAVILESP 183
>gi|6687391|emb|CAB64936.1| heterogeneous nuclear ribonucleoprotein (hnRNP) [Drosophila
melanogaster]
Length = 496
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 17 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 73
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
++ + + + +++ E+ DF + RL++ + GC++GKGG
Sbjct: 74 ---------IESTLEIITEMLKYFEERDEDF--------DVRLLIHQSLAGCVIGKGGQK 116
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 117 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDTPI 169
Query: 355 SGTL 358
G +
Sbjct: 170 KGAI 173
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+ + G++ G+ G + R+R S A + + EP S DRI+ ISGTP + Q
Sbjct: 420 NNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITIDEPLPNSNDRIITISGTPKQIQM 479
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 480 AQYLLQ 485
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R + I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHITITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|326935642|ref|XP_003213877.1| PREDICTED: poly(rC)-binding protein 2-like, partial [Meleagris
gallopavo]
Length = 168
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 12/172 (6%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVF 256
VG++IGKG ++ + ++ E+GA I++ C ER+IT+ GP + KA ++
Sbjct: 1 VGSIIGKGKSV-KKMREESGARINISEG--NCPERIITLA---GPTNAIF---KAFAMII 51
Query: 257 SRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316
+L E S + ++ V RLVV ++Q G L+GKGG I E+R+ TG +++ D
Sbjct: 52 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 111
Query: 317 QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSS 368
L + +R + I+G + + V + + ++ G R + +SS
Sbjct: 112 MLP---NSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSS 160
>gi|170586586|ref|XP_001898060.1| KH domain containing protein [Brugia malayi]
gi|158594455|gb|EDP33039.1| KH domain containing protein [Brugia malayi]
Length = 451
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 116/265 (43%), Gaps = 53/265 (20%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEN-DRVVQISGEFSKVK 339
+++V + G ++G+GG+ I E+R+ TG +++ S +C ++ +R+V ++GE K+
Sbjct: 222 KVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFS----RCAPQSTERIVLLNGEVEKII 277
Query: 340 DAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRL-KDPASFGVHSSVAVSHDFS 398
D + + L++ G + PY + DP + +F
Sbjct: 278 DCINIIIDVLKEIPIKGPVR---------------PYDPMYYDPDIISDYGGYVPDRNFI 322
Query: 399 QPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG 458
+ +G D G S + P G GG+
Sbjct: 323 S-RVGRGRD-FGFSSGIIPSRYP-------------------------GRDDRYGGMRDM 355
Query: 459 SGSKSAI--VTNTTVE---IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTD 513
G S I + T VE + +P+ + G++ G+ GS + R+R+ SGA++ V R D
Sbjct: 356 MGRYSPIPAMQTTQVETTDVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGGD 415
Query: 514 RIVVISGTPDETQAAQSLLQAFILT 538
RI+ ISGT ++ QAAQ LLQ + T
Sbjct: 416 RIITISGTREQIQAAQYLLQQCVRT 440
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILGSP 174
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V LD TQ F L ND +G VIG+ G+ I ++ +GA I +G ER +
Sbjct: 232 VPGLDPSTQTSSQEF--LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 234 TVTAS 238
T+T S
Sbjct: 290 TITGS 294
>gi|410925642|ref|XP_003976289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Takifugu rubripes]
Length = 430
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V RIL + GAVIGKGG I+AL+++ A +S
Sbjct: 19 ANGKRPAEDMDEEHAFKRSRNADEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVS 78
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++V AS K ++ + L E G+DF S LL++
Sbjct: 79 VPDSSGP---ERILSVNAS------IDTIGKILLKIIPTLEEYQHYSGIDFDSELRLLIH 129
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L G ++G G I E+R+ T T+I++ + C DRVV + G+ +V
Sbjct: 130 QSL------AGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVLVGGKPERVI 180
Query: 340 DAV 342
+ +
Sbjct: 181 ECI 183
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 42/64 (65%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R GA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 356 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 415
Query: 530 SLLQ 533
LLQ
Sbjct: 416 YLLQ 419
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R G SI+I D+ L+ DR++
Sbjct: 347 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKI--DEPLE--GSEDRII 402
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+G ++++A Y + +R +SG
Sbjct: 403 TITGTQDQIQNAQYLLQNSVR--QYSGRF 429
>gi|118486946|gb|ABK95306.1| unknown [Populus trichocarpa]
Length = 313
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESR 244
++L SN G+VIGKGG I QS++GA I + P +R+I ++
Sbjct: 37 IKLLVSNAAAGSVIGKGGATITDFQSQSGARIQLSKNYEFFPGTSDRIILISGG------ 90
Query: 245 YSPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
A KA+ L+ ++L+ E +E G D + RLVV +N G ++GKGG+II
Sbjct: 91 IDDALKALELIIAKLLSEIPTEDGDDAEPR----MRVRLVVPNNACGSIIGKGGSIIKSF 146
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-HF 354
+ + I+ IS + DR+V I+G + A+ + +L D+ H+
Sbjct: 147 IEESHAGIK-ISPLDTDFLGLTDRLVAITGTLEEQMHAIDLILSKLTDDTHY 197
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISG 520
A+ T ++++V GSV G+ G+ + + SGA++ + +E G++DRI++ISG
Sbjct: 30 AVEKPTYIKLLVSNAAAGSVIGKGGATITDFQSQSGARIQLSKNYEFFPGTSDRIILISG 89
Query: 521 TPDETQAAQSLLQAFILT 538
D+ A L+ A +L+
Sbjct: 90 GIDDALKALELIIAKLLS 107
>gi|348517286|ref|XP_003446165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 435
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 19/189 (10%)
Query: 155 SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
S S + + RP ++ + +R + V RIL + GAVIGKGG I+AL+++
Sbjct: 12 SFSNTETNGKRPAEDADEQKSFKRSRNSDEMVELRILLQSKNAGAVIGKGGKNIKALRTD 71
Query: 215 AGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
A +SV ++ P ER+++++A + ++ + L E G+DF
Sbjct: 72 YKASVSVPDSSGP---ERILSISAD------IETVGEILLKIIPTLEEYQQYNGMDFD-- 120
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
RL++ + G ++G G I E+R+ T TSI++ + C DRVV + G
Sbjct: 121 ----CELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQE---CCPQSTDRVVLVGG 173
Query: 334 EFSKVKDAV 342
+ +V + +
Sbjct: 174 KTERVVECI 182
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ ISGT D+ Q AQ
Sbjct: 361 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNAQ 420
Query: 530 SLLQ 533
LLQ
Sbjct: 421 YLLQ 424
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
++ G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 352 YNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 407
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
ISG ++++A Y + ++ +SG L
Sbjct: 408 TISGTQDQIQNAQYLLQNSVK--QYSGHL 434
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPTNGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|116180584|ref|XP_001220141.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185217|gb|EAQ92685.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 485
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 85/363 (23%), Positives = 143/363 (39%), Gaps = 29/363 (7%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 125 IHVRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSG-------- 176
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L + SS RL++ +G ++GKGG I E++
Sbjct: 177 --IVDAVAKAFGLIIRTLNNEPLGEPSSQHSKTYPLRLLIPHILIGSIIGKGGARIKEIQ 234
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E VV G V A Y V L + F G +A
Sbjct: 235 EASGARLNA-SDSCLPLSTERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGASASA 291
Query: 362 R-TRSTSSVLTETS-----PYSRLKDPASFG----VHSSVAVSHDFSQPPLTQGMDHLGL 411
TRS PY+ +FG H PP +
Sbjct: 292 YATRSGGPAGAVPGGMQVIPYNPQPAGGNFGNRDNYHRGRPDPRAHHMPPQAYPPQYGHP 351
Query: 412 SHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT-- 469
P++P + G + G H G A V
Sbjct: 352 HQPHPNPAAPMPYGGHAAAGGYGAGPHVQPHPAGPAGPHGPAGPHGQPMPGGAAVPGGPL 411
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T +I +P +++G++ G+ G + +RQISG+ + ++EP+ S +R+V I+GT + + A
Sbjct: 412 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 471
Query: 530 SLL 532
+L
Sbjct: 472 YML 474
Score = 45.4 bits (106), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
+I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T +E E
Sbjct: 414 QIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTE--ECN---- 467
Query: 249 QKAVVLVFSRL 259
+ A+ +++SRL
Sbjct: 468 RMALYMLYSRL 478
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 408 GGPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQ----DNSNERLVTITGT 463
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 464 EECNRMALYMLYSRL 478
>gi|327267261|ref|XP_003218421.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Anolis carolinensis]
Length = 576
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A PE ER++ +T P
Sbjct: 402 EQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPEASERMVIITGP--P 458
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 459 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSSAAGRVIGKGGKTVN 509
Query: 302 EMRKVTGTSIRIISDQLLKCISENDR-VVQISGEF 335
E++ +T + + DQ EN+ VV+I G F
Sbjct: 510 ELQNLTSAEVIVPRDQ---TPDENEEVVVKIIGHF 541
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ L + + + + GA E+
Sbjct: 186 SQPKQLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAA-----EKP 240
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
IT+ A+ PE S A + ++ + + E T S+ + + +++ ++ VG L
Sbjct: 241 ITIHAT--PEG-CSEACRMILDIMQKEAEETK------SAEE---IPLKILAHNSLVGRL 288
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+GK G + ++ + TGT I I Q L I +R + + G +A + +LR+
Sbjct: 289 IGKEGRNLKKIEQDTGTKITISPLQDL-TIYNPERTITVKGSIEACSNAEAEIMNKLREA 347
Query: 353 H 353
+
Sbjct: 348 Y 348
>gi|328787572|ref|XP_393878.3| PREDICTED: IGF-II mRNA-binding protein [Apis mellifera]
gi|380027404|ref|XP_003697415.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Apis florea]
Length = 626
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N VGA+IG G+ IR + +GA + + + + ++R +T+ S
Sbjct: 404 QETAF-LYIPNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVDQQNDRKVTIVGS 462
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + + ++V S QVG ++GKGG
Sbjct: 463 --PESQW----KAQYLIFEKM----REEGF-VAGTEDVRLTIEILVPSTQVGRIIGKGGQ 511
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q ++ + VQI G F V+ A
Sbjct: 512 NVRELQRVTGSIIKLSEQQSTSPSADEEATVQIIGPFFSVQSA 554
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL ++ VGA+IG+ G+ IR + A + S+GA E+ IT+
Sbjct: 183 RQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAA-----EKAITI 237
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + +K ++E T ++ S + ++ R++ +N +G ++GK
Sbjct: 238 YGN--PENCTNACKK--------IMEVTQQEAYGLSKGE---ISLRILAHNNLIGRIIGK 284
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GGT I ++ + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 285 GGTTIKKIMQDTDTKITVSSINDINNFNL-ERIITVKGSIDNMSKAESMISNKLR----- 338
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S L P G+H P+ M G+ +S
Sbjct: 339 --------QSYENDLQAMAPQS-LMFP---GLH------------PMAM-MSTAGMGYSS 373
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L GS + L + G+ +G T T + +
Sbjct: 374 RGPG--------------LYGSGPAPYPYQASLPTQQ-GIPIGD-------TQETAFLYI 411
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P +G++ G GS++ + + SGA V + +P DR V I G+P+ AQ
Sbjct: 412 PNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVDQQNDRKVTIVGSPESQWKAQY 471
Query: 531 LL 532
L+
Sbjct: 472 LI 473
>gi|414867455|tpg|DAA46012.1| TPA: hypothetical protein ZEAMMB73_887859 [Zea mays]
Length = 455
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 76/143 (53%), Gaps = 12/143 (8%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD-ERLITVTASE 239
++ + S RILC+++ +G+VIGK G +R ++ + GA I V + ERLI V+++E
Sbjct: 207 SENGDKSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNE 266
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKG---------LDFSSNKGLLVNARLVVASNQVG 290
P SP +A++L+ +++ ++ L S N + R++ AS +G
Sbjct: 267 IPTEPISPTIEALILLHDKVLMAEVKRNHGGGMRCDELPVSENGDKSI--RILCASELIG 324
Query: 291 CLLGKGGTIISEMRKVTGTSIRI 313
++GK G + + + TG I++
Sbjct: 325 SVIGKSGANVRRVEQQTGARIKV 347
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQ 526
+ ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 211 DKSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTE 270
Query: 527 AAQSLLQAFIL 537
++A IL
Sbjct: 271 PISPTIEALIL 281
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDRIVVISGTPDETQ 526
+ ++ I+ +IGSV G++G+N+ R+ Q +GA++ V E + S +R++++S T+
Sbjct: 311 DKSIRILCASELIGSVIGKSGANVRRVEQQTGARIKVQEIDKDASGERLIIVSSNEIPTE 370
Query: 527 AAQSLLQAFIL 537
++A IL
Sbjct: 371 PISPTIEALIL 381
>gi|209148569|gb|ACI32944.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 443
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ ISGT D+ Q AQ
Sbjct: 369 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNAQ 428
Query: 530 SLLQ 533
LLQ
Sbjct: 429 YLLQ 432
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 155 SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
S S + + RP + + +R + V RIL + GAVIGKGG I++L+++
Sbjct: 13 SFSNTETNGKRPAEDADEEQSYKRSRNTEDMVELRILLQSKNAGAVIGKGGKNIKSLRTD 72
Query: 215 AGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
A +SV ++ P ER++++ A ++ + L E G+DF
Sbjct: 73 FNASVSVPDSSGP---ERILSIGAE------IETVGDILLKIIPTLEEYQQYNGMDFD-- 121
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
RL++ + G ++G G I E+R+ T T+I++ + C DRVV +SG
Sbjct: 122 ----CELRLLIHQSLAGSIIGVKGAKIKELRENTQTNIKLFQE---CCPQSTDRVVLVSG 174
Query: 334 EFSKVKDAV 342
+ +V + +
Sbjct: 175 KSERVVECI 183
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
++ G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 360 YNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 415
Query: 330 QISGEFSKVKDAVY 343
ISG ++++A Y
Sbjct: 416 TISGTQDQIQNAQY 429
>gi|346322193|gb|EGX91792.1| KH domain RNA binding protein [Cordyceps militaris CM01]
Length = 464
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 155/370 (41%), Gaps = 38/370 (10%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 107 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGI------V 160
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
A KA L+ L +E + S+ RL++ +G ++GKGG I E+++
Sbjct: 161 DAAAKAFGLIIRTL---NNEPLTETSTASSKTYPLRLLIPHILIGSIIGKGGARIREIQE 217
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR 362
+G + SD L SE VV G V A Y V L + F G +A
Sbjct: 218 ASGARLNA-SDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASAY 274
Query: 363 -TRSTSSVLT-----ETSPYSRLKDPAS--------FGVHSSVAVSHDFSQPPLTQGMDH 408
TRS + + + PYS PAS +G HS P Q H
Sbjct: 275 ATRSGTPAGSIPGGMQVVPYS--PQPASGQYGRSDNYGRHSERRPPMPPPAPYPAQYPPH 332
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKG--GLELGSGSKSAIV 466
G ++ P+ P + AQ G H G + +G A +
Sbjct: 333 AGAQAAV--PAMPMHYGAQAGAYGAAAPHVQQHMPPHTGAQPHGGPQAQNMHAGMPGAPM 390
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQ 526
T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V ++GT + +
Sbjct: 391 TQ---QIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNSNERLVTVTGTEECNR 447
Query: 527 AAQSLLQAFI 536
A LL A +
Sbjct: 448 MALYLLYARL 457
>gi|444513545|gb|ELV10391.1| Poly(rC)-binding protein 4 [Tupaia chinensis]
Length = 399
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ + C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI--SEGSCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S+ V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGSNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 220 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 279
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 280 ITACLETAKS 289
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 33/190 (17%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTAS------ 238
V+ R++ + G++IGK GT I+ ++ GA + V G +P ER +TV+
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIIL 161
Query: 239 ----------EG--PESRYSPAQKAVVLVFSRL-------IEGTSEKGLDFSSNKGLLVN 279
EG + +Y A V +L + GLD S+ +
Sbjct: 162 CVRQICAVILEGFSVQGQYGAVTPAEVTKLQQLSGHAVPFASPSVVPGLDPSTQTS---S 218
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
+V ++ +GC++G+ G+ ISE+R+++G I+I + + +R V I+G +
Sbjct: 219 QEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGN----QAEGAGERHVTITGSPVSIA 274
Query: 340 DAVYNVTGRL 349
A Y +T L
Sbjct: 275 LAQYLITACL 284
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTG 539
+ A IL G
Sbjct: 163 VRQICAVILEG 173
>gi|223649086|gb|ACN11301.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 440
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ ISGT D+ Q AQ
Sbjct: 366 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNAQ 425
Query: 530 SLLQ 533
LLQ
Sbjct: 426 YLLQ 429
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 155 SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
S S + + RP + + +R V RIL + GAVIGKGG I++L+++
Sbjct: 13 SFSNTETNGKRPAEDAEEEQSFKRSRNTDDMVELRILLQSKNAGAVIGKGGKNIKSLRTD 72
Query: 215 AGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273
A +SV ++ P ER+++++A + ++ + L E G+DF
Sbjct: 73 FNASVSVPDSSGP---ERILSISAE------IETVGEILLKIIPTLEEYQQYNGMDFD-- 121
Query: 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
RL++ + G ++G G I E+R+ T TSI++ + C DRVV + G
Sbjct: 122 ----CELRLLIHQSLAGSIIGVKGAKIKELRENTQTSIKLFQE---CCPQSTDRVVLVGG 174
Query: 334 EFSKVKDAV 342
+ +V + +
Sbjct: 175 KSERVVECI 183
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
++ G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 357 YNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 412
Query: 330 QISGEFSKVKDAVY 343
ISG ++++A Y
Sbjct: 413 TISGTQDQIQNAQY 426
>gi|401626761|gb|EJS44683.1| pbp2p [Saccharomyces arboricola H-6]
Length = 416
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/371 (20%), Positives = 155/371 (41%), Gaps = 67/371 (18%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V R+LC ++G G I ++SE A I+V + ER++ V +
Sbjct: 70 VHLRMLCLVKHASLIVGHKGATISKIKSETSARINVSNNIRGVPERIVYVRGT------- 122
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
V +S ++ E+ + + + V L++ + +GC++GK G+ + E+
Sbjct: 123 ---CDDVAKAYSMIVRALLEEHENEDQEEDIEVTINLLIPHHLMGCIIGKRGSRLREIED 179
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
++ + +QLL NDR++ ISG V DA++ T + + + + + +
Sbjct: 180 LSAAKLFASPNQLLL---SNDRILTISG----VPDAIHIATFYIGQTLLNFQMESPQKKL 232
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQP-PLTQGMDH---------------- 408
S+ + P F +SV + H SQP + +H
Sbjct: 233 KRSIFYQ---------PTQF---NSVLIDH--SQPNAILHQRNHQYHPNDKQLSGRPNRK 278
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDV-------GRGWSQGLSHHKGGLELGSGS 461
+S + + P+ TA + + + G + G+S+H L +
Sbjct: 279 FSVSSTFLNMAPPQYTTASVANATAFQPNFVIPNVRILDGSVVNSGISNH---LSMNLVQ 335
Query: 462 KSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT 521
+ EI + EN +G+V G++G ++ +++ +G +I+ +P +++R + I GT
Sbjct: 336 Q---------EIFIDENFVGNVIGKDGKHINSVKESTGCSIIIQDPVECASERRLSIRGT 386
Query: 522 PDETQAAQSLL 532
+QAA L+
Sbjct: 387 FMASQAAIMLI 397
>gi|340722699|ref|XP_003399741.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 2 [Bombus terrestris]
Length = 577
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N VGA+IG G+ IR + +GA + + + + ++R +T+ S
Sbjct: 354 QETAF-LYIPNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGS 412
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + ++V S QVG ++GKGG
Sbjct: 413 --PESQW----KAQYLIFEKM----REEGF-VGGTEDVRLTIEILVPSTQVGRIIGKGGQ 461
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q ++ + VQI G F V+ A
Sbjct: 462 NVRELQRVTGSIIKLSEQQSTSPSADEEATVQIIGPFFSVQSA 504
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL ++ VGA+IG+ G+ IR + A + S+GA E+ IT+
Sbjct: 133 RQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAA-----EKAITI 187
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + +K ++E T ++ S + ++ R++ +N +G ++GK
Sbjct: 188 YGN--PENCTNACKK--------IMEVTQQEAYGLSKGE---ISLRILAHNNLIGRIIGK 234
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GGT I ++ + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 235 GGTTIKKIMQDTDTKITVSSINDINNFNL-ERIITVKGSIDNMSKAESMISSKLR----- 288
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S L P G+H P+ M G+ +S
Sbjct: 289 --------QSYENDLQAMAPQS-LMFP---GLH------------PMAM-MSTAGMGYSS 323
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L GS + L + G+ +G T T + +
Sbjct: 324 RGPG--------------LYGSGPAPYPYQTSLPTQQ-GIPIGD-------TQETAFLYI 361
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P +G++ G GS++ + + SGA V + +P DR V I G+P+ AQ
Sbjct: 362 PNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGSPESQWKAQY 421
Query: 531 LL 532
L+
Sbjct: 422 LI 423
>gi|348521966|ref|XP_003448497.1| PREDICTED: far upstream element-binding protein 1 [Oreochromis
niloticus]
Length = 631
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 150 LTTAPSSSISYVSAVRPL----SLESDRVATLDART-------QQQEVSFRILCSNDKVG 198
+ P++ Y RPL E+ +VAT DA + + S + VG
Sbjct: 41 VAAPPTNEFGYGGQKRPLEDADQPETKKVATNDAFSGIGGMAGPPRSTSEEFKVPDGMVG 100
Query: 199 AVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSR 258
+IG+GG I LQ E+G I + +R +T+T PES Q A L+
Sbjct: 101 FIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGL--PES----IQTAKRLLTEI 154
Query: 259 LIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQL 318
+ +G + G+ V +V AS + G ++GKGG I +++ G + +I D
Sbjct: 155 VEKGRPAPAFHHNDGPGMTVQEIMVPAS-KAGLVIGKGGETIKSLQERAGVKMVMIQDGP 213
Query: 319 LKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+ D+ ++ISGE KV+ A V +RD F
Sbjct: 214 QNTGA--DKPLRISGEPFKVQQAKEMVMELIRDQGF 247
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 458 GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517
G G + +T+ E VP+ ++G + G G + RL+Q SG K+ + G DR V
Sbjct: 77 GIGGMAGPPRSTSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVT 136
Query: 518 ISGTPDETQAAQSLLQAFILTG 539
++G P+ Q A+ LL + G
Sbjct: 137 LTGLPESIQTAKRLLTEIVEKG 158
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 23/161 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIIS 301
AV S + E ++N G + V RLV+ ++Q G L+GK GT I
Sbjct: 70 ----AAVFHAVSMIAFKLDEDLCSATANGGNISRPPVTLRLVIPASQCGSLIGKAGTKIK 125
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
E+R+ TG +++ D L + +R V +SG V DA+
Sbjct: 126 EIRETTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|340722697|ref|XP_003399740.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 1 [Bombus terrestris]
Length = 627
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N VGA+IG G+ IR + +GA + + + + ++R +T+ S
Sbjct: 404 QETAF-LYIPNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGS 462
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + ++V S QVG ++GKGG
Sbjct: 463 --PESQW----KAQYLIFEKM----REEGF-VGGTEDVRLTIEILVPSTQVGRIIGKGGQ 511
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q ++ + VQI G F V+ A
Sbjct: 512 NVRELQRVTGSIIKLSEQQSTSPSADEEATVQIIGPFFSVQSA 554
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL ++ VGA+IG+ G+ IR + A + S+GA E+ IT+
Sbjct: 183 RQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAA-----EKAITI 237
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + +K ++E T ++ S + ++ R++ +N +G ++GK
Sbjct: 238 YGN--PENCTNACKK--------IMEVTQQEAYGLSKGE---ISLRILAHNNLIGRIIGK 284
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GGT I ++ + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 285 GGTTIKKIMQDTDTKITVSSINDINNFNL-ERIITVKGSIDNMSKAESMISSKLR----- 338
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S L P G+H P+ M G+ +S
Sbjct: 339 --------QSYENDLQAMAPQS-LMFP---GLH------------PMAM-MSTAGMGYSS 373
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L GS + L + G+ +G T T + +
Sbjct: 374 RGPG--------------LYGSGPAPYPYQTSLPTQQ-GIPIGD-------TQETAFLYI 411
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P +G++ G GS++ + + SGA V + +P DR V I G+P+ AQ
Sbjct: 412 PNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGSPESQWKAQY 471
Query: 531 LL 532
L+
Sbjct: 472 LI 473
>gi|79550843|ref|NP_178410.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|45752620|gb|AAS76208.1| At2g03110 [Arabidopsis thaliana]
gi|46359791|gb|AAS88759.1| At2g03110 [Arabidopsis thaliana]
gi|330250570|gb|AEC05664.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 153
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 15/149 (10%)
Query: 219 ISVGATMPECDERLITVTASEGPESRYS--------PAQKAVVLVFS-----RLIEGTSE 265
+ V +P CDER++T+ ++ +R PA A+ V +
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 266 KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKC--IS 323
D S +V R++V S+Q+G L+GKGG II +R T IR+ +D L C
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALAL 120
Query: 324 ENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+D ++QI G+ S V++A+Y V L +N
Sbjct: 121 SHDELLQIIGDPSAVREALYQVAFLLYNN 149
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/361 (22%), Positives = 151/361 (41%), Gaps = 78/361 (21%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R L +IGK G+ + ++ ++GA + V ++P ER++ V+ GP
Sbjct: 63 IHMRCLIVTQDASIIIGKAGSHVNEIREKSGARVVVSESIPGNPERILNVS---GP---- 115
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F ++ +++ D S G V + ++ ++++G ++GKGGT I E++
Sbjct: 116 ---LDAVSKAFGLIVRRINDEPFDKPSVPGSRAVTIKFMIPNSRMGSVIGKGGTKIKEIQ 172
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTR 364
+ +G + S+ +L +E R++ +SG V DA++ T + L A R
Sbjct: 173 EASGARLN-ASETMLPGSTE--RLLSVSG----VADAIHIAT-----YYIGNILIEANER 220
Query: 365 STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLW 424
+ T S Y P+S+ S+ S +PP +
Sbjct: 221 MPT---TNNSSYR----PSSYQASSAPPSSTPRGRPPYS--------------------- 252
Query: 425 TAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVY 484
GSS V G+ Q G S + T +I +P +++G +
Sbjct: 253 -----------GSSYVPGGYGQNPYAPAAPAAPAPGPPSQLQTQ---QIYIPNDLVGCII 298
Query: 485 GENGSNLLRLRQISGAKVIVHEP------------RLGST-DRIVVISGTPDETQAAQSL 531
G+ G+ + +R +S +++ + EP GS +R+VVI+G P Q A L
Sbjct: 299 GKGGAKINEIRHMSASQIKIMEPGAVGVGLNGAAAPAGSEGERLVVITGQPANIQMAVQL 358
Query: 532 L 532
L
Sbjct: 359 L 359
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 54/218 (24%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM-P------------------ 226
V+ + + N ++G+VIGKGGT I+ +Q +GA ++ TM P
Sbjct: 146 VTIKFMIPNSRMGSVIGKGGTKIKEIQEASGARLNASETMLPGSTERLLSVSGVADAIHI 205
Query: 227 ----------ECDERLITVTASEGPESRY--SPAQKAVVLVFSRLIEGTSEKGLDFSSN- 273
E +ER+ T S S Y S A + G+S + N
Sbjct: 206 ATYYIGNILIEANERMPTTNNSSYRPSSYQASSAPPSSTPRGRPPYSGSSYVPGGYGQNP 265
Query: 274 -------------KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRI------- 313
L ++ + ++ VGC++GKGG I+E+R ++ + I+I
Sbjct: 266 YAPAAPAAPAPGPPSQLQTQQIYIPNDLVGCIIGKGGAKINEIRHMSASQIKIMEPGAVG 325
Query: 314 --ISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
++ SE +R+V I+G+ + ++ AV + RL
Sbjct: 326 VGLNGAAAPAGSEGERLVVITGQPANIQMAVQLLYSRL 363
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 174 VATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLI 233
V LD TQ F L ND +G VIG+ G+ I ++ +GA I +G ER +
Sbjct: 232 VPGLDPSTQTSSQEF--LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 234 TVTAS 238
T+T S
Sbjct: 290 TITGS 294
>gi|389585810|dbj|GAB68540.1| RNA-binding protein Nova-1, partial [Plasmodium cynomolgi strain B]
Length = 278
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
++L +N G+VIGK G+II +++++ G + + T P ER++ + +
Sbjct: 21 KMLVNNLVAGSVIGKNGSIITSIENKTGCSLKLSPTNSYFPNTQERVLVLCGKQ------ 74
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSS-NKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
A++++ ++ + T++ D + N R+VV + V ++GKGG I +++
Sbjct: 75 EQINNALLIILDKIRQITTQNFQDKQNINTAPKYTCRIVVPKSAVSAIIGKGGQQIKQLQ 134
Query: 305 KVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR-DNHFSGTLNTA 361
TG I+I S D L N+R++ I G F + D VT ++ D + LN
Sbjct: 135 DSTGAKIQISSREDGL------NERIISIIGPFESISDTAIKVTNSIQNDPNLKDLLNVI 188
Query: 362 RTRSTS 367
++ TS
Sbjct: 189 YSKDTS 194
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|255583738|ref|XP_002532622.1| Far upstream element-binding protein, putative [Ricinus communis]
gi|223527642|gb|EEF29753.1| Far upstream element-binding protein, putative [Ricinus communis]
Length = 314
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
R L SN G+VIGKGG I QS++GA I + P +R+I ++
Sbjct: 39 RFLVSNAAAGSVIGKGGATITDFQSQSGARIQLSRNYEFFPGTSDRIILISGI------L 92
Query: 246 SPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
K V LV ++L+ E +E G D RLVV ++ G ++GKGG+II
Sbjct: 93 DDVLKGVELVLAKLLSELHTEDGDDVDPR----TKVRLVVPNSSCGSIIGKGGSIIKSFI 148
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN-HFSGTL 358
+ + I+ IS Q NDR+V ++G + A+ + +L D+ H+ T+
Sbjct: 149 EESQAGIK-ISPQDNNFYGLNDRLVTVTGTLEEQMRAIDLILSKLYDDPHYVQTM 202
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 31/188 (16%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG---ATMPECDERLI 233
+D RT+ R++ N G++IGKGG+II++ E+ A I + ++RL+
Sbjct: 118 VDPRTK-----VRLVVPNSSCGSIIGKGGSIIKSFIEESQAGIKISPQDNNFYGLNDRLV 172
Query: 234 TVTAS----------------EGP---ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNK 274
TVT + + P ++ ++P AV ++ + G + G F +NK
Sbjct: 173 TVTGTLEEQMRAIDLILSKLYDDPHYVQTMHAPFSYAV--AYNSMNYGANGAGGKFQNNK 230
Query: 275 GLLVNARLV-VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
N+ + VA +G ++G+GG I E+ +V+G I+ ISD+ NDR + I+G
Sbjct: 231 EDRTNSVTIGVADAHIGLVVGRGGRNIMEISQVSGARIK-ISDRGDFMSGTNDRKIIITG 289
Query: 334 EFSKVKDA 341
++ A
Sbjct: 290 SQRAIRTA 297
>gi|170060296|ref|XP_001865738.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167878802|gb|EDS42185.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 188
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 228 CDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASN 287
C ER++TV+ S S KA L+ + E S+ + ++ + RL+V ++
Sbjct: 16 CPERIVTVSGSR------SAIYKAFTLITKKFEEWCSQFQDNTNAQGKTQIPIRLIVPAS 69
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
Q G L+GKGG+ I E+R++TG SI++ S+ L + +R V +SG + +Y++
Sbjct: 70 QCGSLIGKGGSKIKEIREITGCSIQVASEMLP---NSTERAVTLSGSADSITQCIYHIC 125
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPD 523
T + +IVP + GS+ G+ GS + +R+I+G + V L ST+R V +SG+ D
Sbjct: 58 TQIPIRLIVPASQCGSLIGKGGSKIKEIREITGCSIQVASEMLPNSTERAVTLSGSAD 115
>gi|383158165|gb|AFG61431.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 61.2 bits (147), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 247 PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
PAQ A++ V S + + +S K D ++K NARL+VA++Q+G L+GKGG I +MR
Sbjct: 18 PAQDALLRVHSVIAQESSVKDKDNDADKKGQQNARLLVANSQIGSLIGKGGNNIQKMRTE 77
Query: 307 TGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I D+L C D +V ISG+ VK A+Y+V+ L
Sbjct: 78 SGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKKALYSVSAFL 121
>gi|344250996|gb|EGW07100.1| Kinesin-like protein KIF27 [Cricetulus griseus]
Length = 1648
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 321 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 380
Query: 530 SLLQ 533
LLQ
Sbjct: 381 YLLQ 384
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 317 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 372
Query: 335 FSKVKDAVYNVTGRLRDNH 353
++++A Y + R NH
Sbjct: 373 QDQIQNAQYLLQNR---NH 388
Score = 39.3 bits (90), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 320 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 373
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|380012793|ref|XP_003690459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Apis
florea]
Length = 443
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 369 TTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQMA 428
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 429 QYLLQ 433
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSK 337
++ R++V +Q GC++GKGG I E+R+ TG I+I S C DR++ I G+ +
Sbjct: 120 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIYSHC---CPHSTDRLISICGKPTT 176
Query: 338 VKDAVYNVTGRLRDNHFSGTLN 359
+ + + ++ + G N
Sbjct: 177 CIECIRELIATIKTSPLKGVNN 198
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D GA+IGKGG IR ++S++GA I++ + ++R+IT+T
Sbjct: 378 DLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITG 420
>gi|156368623|ref|XP_001627792.1| predicted protein [Nematostella vectensis]
gi|156214712|gb|EDO35692.1| predicted protein [Nematostella vectensis]
Length = 390
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 86/387 (22%), Positives = 156/387 (40%), Gaps = 104/387 (26%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
+IL N G++IGKGG I +Q GA I + P ++Y P
Sbjct: 48 LKILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLS------------------PNNQYYP 89
Query: 248 AQKAVVLVFSRLIEGTSEKGLDFSSNK------GLLVNA------------RLVVASNQV 289
+ + + +E + LDF +K G+ + +++V ++
Sbjct: 90 GTQERIGLIMGEVENIVQM-LDFVIDKIRQEPQGIKASMSISFDRERAKQMKIIVPNSTA 148
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR- 348
G ++GK G+ I + + TG I+I S + + ++ +R+V + G +V A +T +
Sbjct: 149 GMIIGKAGSAIKSISEQTGARIQI-SQKDAESVA-GERIVCVGGSQEQVTAACVIITSKV 206
Query: 349 -------LRDNHFSGTLNTARTRSTSSVLTETS-----PYSRLKDPASFGVHSSVAV--- 393
L +N L T+R T+ L ++ P+S L ++ G+ ++
Sbjct: 207 QEDPEHALNNNIMYSGLTTSRAGHTNGQLAGSAFSSGLPFSALSGLSALGLTNTATAQNT 266
Query: 394 -----SHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGL 448
+H +Q L G + L+ P +P TA
Sbjct: 267 TTSATNHILAQAALMSGSN-------LNNPMAPPTSTA---------------------- 297
Query: 449 SHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH--- 505
+ S+I ++ T+EI VP+ +IG++ G+ G + Q SGA++ V
Sbjct: 298 ------------TSSSIQSSATLEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKG 345
Query: 506 EPRLGSTDRIVVISGTPDETQAAQSLL 532
E G+++R VVI+G Q A L+
Sbjct: 346 EFVPGTSNRKVVITGDVPAAQLAHFLV 372
>gi|119195161|ref|XP_001248184.1| hypothetical protein CIMG_01955 [Coccidioides immitis RS]
gi|303310665|ref|XP_003065344.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105006|gb|EER23199.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|392862573|gb|EAS36772.2| KH domain RNA-binding protein [Coccidioides immitis RS]
Length = 366
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 149/365 (40%), Gaps = 75/365 (20%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 100
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN-----ARLVVASNQVGCLLGKGG 297
KA +V L+EG + G+ G++ N RL+++ NQ+G ++G+ G
Sbjct: 101 --LQGTAKAYGMVAKSLLEGAPQMGMG-----GIIQNNGTHPVRLLISHNQMGTIIGRNG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 154 LKIKCIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 210
Query: 358 ---LNTARTR------STSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH 408
L R S +S +P + P ++ DFS P T
Sbjct: 211 GTVLYNPAVRANVGGASMNSAFVGPNPNTYSGRP-----YNRTGNGADFSDHPGT----- 260
Query: 409 LGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTN 468
H+ D P+ G+ L + + T
Sbjct: 261 YNRRHNSDAPNR---------------------------------GIPLVTEDGEEVQTQ 287
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST-DRIVVISGTPDETQA 527
I +P +++G + G GS + +R+ SGA++ + + T +R+ I G+ +
Sbjct: 288 N---ISIPSDMVGCIIGRGGSKISEIRRSSGARISIAKAAHDETGERMFTIMGSAQANEK 344
Query: 528 AQSLL 532
A LL
Sbjct: 345 ALYLL 349
>gi|396482778|ref|XP_003841545.1| similar to KH domain RNA binding protein [Leptosphaeria maculans
JN3]
gi|312218120|emb|CBX98066.1| similar to KH domain RNA binding protein [Leptosphaeria maculans
JN3]
Length = 488
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 94/430 (21%), Positives = 175/430 (40%), Gaps = 56/430 (13%)
Query: 129 AVSQEILPDLHVD-ILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVS 187
AV++ + ++ D ++ S+L T P S S + RPLS T +
Sbjct: 78 AVAENGVENVQPDTVVPDAPSILETQPIQSTSGANG-RPLSHNQQVDET-------NWLH 129
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSP 247
R + +IGKGG + ++ +GA +V ER++TV+
Sbjct: 130 VRACIGTSEAATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQV-------- 181
Query: 248 AQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
AV F ++ +++ L+ S++ RL++ +G ++GK G I E+++
Sbjct: 182 --DAVSKAFGLIVRTLNQEDLETPSTSTSKAYPMRLLIPHILIGSIIGKAGVRIREIQEA 239
Query: 307 TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNT--- 360
+ + SD LL + +R + + G V AVY V L + F G +
Sbjct: 240 SNAKLNA-SDTLLP--NSGERSLVVLGVADAVHIAVYYVAQTLVEQLTERFGGPAASQYA 296
Query: 361 ARTRSTSSVL---TETSPY------SRLKDPASF--------GVHSSVAVSH-DFSQPPL 402
R+ ++V+ PY + P +F H +H QPP
Sbjct: 297 TRSGMAANVVPGGMSVQPYVPQPAGGQYSHPQNFRREPTQRTPAHGGYGAAHMHGGQPPQ 356
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
H + + P + G +S G + ++H ++ GS
Sbjct: 357 PSPYGHPNMPYGAGSP-------GRAPYGGPAAPTSYGGHHAAAPVAHGSTPMQPAVGSM 409
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTP 522
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP S +R+V I+GT
Sbjct: 410 PG--QPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSMIKINEPTDNSNERLVTITGTQ 467
Query: 523 DETQAAQSLL 532
+ Q A +L
Sbjct: 468 ECNQMALYML 477
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 412 QPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSMIKINEPTDNSNERLVTITGTQ--EC 469
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 470 N----QMALYMLYSRL 481
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 272 SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331
S G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I + N+R+V I
Sbjct: 408 SMPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSMIKINE----PTDNSNERLVTI 463
Query: 332 SGEFSKVKDAVYNVTGRL 349
+G + A+Y + RL
Sbjct: 464 TGTQECNQMALYMLYSRL 481
>gi|328774304|gb|EGF84341.1| hypothetical protein BATDEDRAFT_8525 [Batrachochytrium
dendrobatidis JAM81]
Length = 343
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 16/172 (9%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DA E++ R L S + G VIGKGG + ++ A + V +P ER++TV
Sbjct: 5 DAAETVPEMTLRSLVSTKEAGVVIGKGGASVANVRQIASVKVGVSKVVPSVSERILTVV- 63
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEG----TSEKGLDFSSNKGLLVNARLVVASNQVGCLL 293
GP KA L+ L+E TS LD + + RL+VA +G ++
Sbjct: 64 --GP---LPNVAKAYALIAKNLLESTQTITSNGNLDSTEESTAI---RLLVAHQLIGSII 115
Query: 294 GKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
GK G I E+++ +G I ++S +++ +E RVV+I G + A+Y++
Sbjct: 116 GKAGAKIREIQEASGAKI-VVSKEMMPQSTE--RVVEIYGLVDAIHIAIYHI 164
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T + V ++IG + G+ GS++ ++R++SGAK+ V E G DR + I GT + + A
Sbjct: 254 TCVMTVQSDMIGCLMGKGGSHITQIRRLSGAKLHVAEQVSGRNDREITIVGTDEANRKAM 313
Query: 530 SLL 532
SLL
Sbjct: 314 SLL 316
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
+ V S+ +GCL+GKGG+ I+++R+++G + + + NDR + I G
Sbjct: 257 MTVQSDMIGCLMGKGGSHITQIRRLSGAKLHVAE----QVSGRNDREITIVG 304
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|332027899|gb|EGI67954.1| Heterogeneous nuclear ribonucleoprotein K [Acromyrmex echinatior]
Length = 992
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 161 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 220
Query: 529 QSLLQAFILTG 539
Q LLQ + G
Sbjct: 221 QYLLQQRYMDG 231
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL 254
D GA+IGKGG IR ++S++GA I++ +P ++R+IT+T S Q A L
Sbjct: 170 DLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIP------SQIQMAQYL 223
Query: 255 VFSRLIEGTSEKGLD--FSS 272
+ R ++G + D FSS
Sbjct: 224 LQQRYMDGFTTNDSDKFFSS 243
>gi|258566349|ref|XP_002583919.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
gi|237907620|gb|EEP82021.1| hypothetical protein UREG_06886 [Uncinocarpus reesii 1704]
Length = 366
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 57/356 (16%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 100
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN-----ARLVVASNQVGCLLGKGG 297
KA +V L+EG + G+ G++ N RL+++ NQ+G ++G+ G
Sbjct: 101 --LQGTAKAYGMVAKSLLEGAPQVGMG-----GIIQNNGTHPVRLLISHNQMGTIIGRQG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 154 LKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDW---- 206
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R T +VL +PA ++ F P G S +
Sbjct: 207 -----QRGTGTVLY---------NPAVRANVGGGQMNSSFLGPNPNYG------GRSYNR 246
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
+ ++ Q +G + R +SD G+ L + + T I +P
Sbjct: 247 TGNGADFSDQPSSGYNRRHNSDA----------PNRGIPLVTEDGEEVQTQN---ISIPS 293
Query: 478 NVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST-DRIVVISGTPDETQAAQSLL 532
+++G + G GS + +R+ SGA++ + + T +R+ I G+ + A LL
Sbjct: 294 DMVGCIIGRGGSKISEIRRSSGARISIAKASHDETGERMFTIMGSAQANEKALYLL 349
>gi|350424346|ref|XP_003493765.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Bombus impatiens]
Length = 626
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 17/163 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
QE +F + N VGA+IG G+ IR + +GA + + + + ++R +T+ S
Sbjct: 404 QETAF-LYIPNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGS 462
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES++ KA L+F ++ E+G + + + ++V S QVG ++GKGG
Sbjct: 463 --PESQW----KAQYLIFEKM----REEGF-VGGTEDVRLTIEILVPSTQVGRIIGKGGQ 511
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ E+++VTG+ I++ Q ++ + VQI G F V+ A
Sbjct: 512 NVRELQRVTGSIIKLSEQQSTSPSADEEATVQIIGPFFSVQSA 554
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 82/362 (22%), Positives = 151/362 (41%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL ++ VGA+IG+ G+ IR + A + S+GA E+ IT+
Sbjct: 183 RQADFPLRILVQSEMVGAIIGRQGSTIRQITQMTRARVDVHRKDSLGAA-----EKAITI 237
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + +K ++E T ++ S + ++ R++ +N +G ++GK
Sbjct: 238 YGN--PENCTNACKK--------IMEVTQQEAYGLSKGE---ISLRILAHNNLIGRIIGK 284
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GGT I ++ + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 285 GGTTIKKIMQDTDTKITVSSINDINNFNL-ERIITVKGSIDNMSKAESMISSKLR----- 338
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S L P G+H P+ M G+ +S
Sbjct: 339 --------QSYENDLQAMAPQS-LMFP---GLH------------PMAM-MSTAGMGYSS 373
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L G+ + L + G+ +G T T + +
Sbjct: 374 RGPG--------------LYGTGPAPYPYQTSLPTQQ-GIPIGD-------TQETAFLYI 411
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P +G++ G GS++ + + SGA V + +P DR V I G+P+ AQ
Sbjct: 412 PNTSVGAIIGSKGSHIRNIIRFSGASVKIAPIEQDKPVEQQNDRKVTIVGSPESQWKAQY 471
Query: 531 LL 532
L+
Sbjct: 472 LI 473
>gi|302508471|ref|XP_003016196.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
gi|291179765|gb|EFE35551.1| hypothetical protein ARB_05593 [Arthroderma benhamiae CBS 112371]
Length = 531
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 209 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GPL 265
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G I
Sbjct: 266 QGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKY 322
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 323 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 374
>gi|390474894|ref|XP_002758191.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Callithrix jacchus]
Length = 1052
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 879 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 935
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 936 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 986
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 987 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 1018
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLL---PNSTERAVTVSG----VPDAI 159
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|291393785|ref|XP_002713277.1| PREDICTED: poly(rC) binding protein 4 [Oryctolagus cuniculus]
Length = 403
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 80/157 (50%), Gaps = 15/157 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGST------ 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + + V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAI 159
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E +VP ++IG V G GS + +RQ+SGA + + G+ +R V I+G+P AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 532 LQAFILTGPS 541
+ A + T S
Sbjct: 305 ITACLETAKS 314
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILESP 174
>gi|453080702|gb|EMF08752.1| hypothetical protein SEPMUDRAFT_151698 [Mycosphaerella populorum
SO2202]
Length = 518
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 186/444 (41%), Gaps = 62/444 (13%)
Query: 129 AVSQEILPDLHVDILSQRNSVLTTAPSSSISYV--SAVRPLSLESDRV--ATLDART--- 181
A + E+ P++ V Q ++V+ AP++ V S+ P+++ D+ +D R
Sbjct: 80 AETAEVNPEVEV-TDKQGDTVVPDAPTNGGVLVDGSSAAPVAVIPDQAHNGPVDTRATPQ 138
Query: 182 ------QQQEVSF---RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERL 232
QQ E + R + S+ + VIGKGG + ++ AGA +V ER+
Sbjct: 139 GAQSYHQQDESQWLHVRAIISSAEAATVIGKGGENVSQIRKLAGAKCTVSEYTRGAVERV 198
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQVGC 291
+TV+ AV F +I +++ L+ S+ + RL++ +G
Sbjct: 199 LTVSGQ----------VDAVAKAFGLIIRTLNQEPLEEPSTPQSKTYPLRLLIPHILIGS 248
Query: 292 LLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
++GK G I E+++ +G + S+ L +E R + + G V A Y V L +
Sbjct: 249 IIGKQGVRIREIQEASGARLNA-SESCLPLSTE--RSLVVLGVADAVHIATYYVGSTLVE 305
Query: 352 ---NHFSGTLNT------ARTRSTSSVLTETSPY------SRLKDPASFGVHSSVAVSHD 396
+ F G + + + PY ++ P + H+
Sbjct: 306 QLTDRFGGPAASNYAGRHGGPQGVVPGGMQVVPYVPQNTGGQVGQPDNNRRHNGPP---- 361
Query: 397 FSQPPLTQGMDHL-GLSHSLDCPSSPKLWTAQT----VTGVHLRGSSDVGRGWSQGLSHH 451
PP+ G + G S P +P + A + G + G Q H
Sbjct: 362 SRGPPVPYGAPSMHGQSPYPQQPVAPVHYGAGSPRAPYAGAGPHQAHPYGHAAPQPGPGH 421
Query: 452 KGGLEL---GSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR 508
G + G G I T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+
Sbjct: 422 AGPPQQPVQGVGPGQPI----TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ 477
Query: 509 LGSTDRIVVISGTPDETQAAQSLL 532
+ +R+V I+GT + Q A +L
Sbjct: 478 DNNNERLVTITGTQECNQMALYML 501
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 436 QPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQ--EC 493
Query: 244 RYSPAQKAVVLVFSRLIE 261
Q A+ +++SRL E
Sbjct: 494 N----QMALYMLYSRLGE 507
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 435 GQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNNNERLVTITGT 490
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 491 QECNQMALYMLYSRL 505
>gi|242058519|ref|XP_002458405.1| hypothetical protein SORBIDRAFT_03g032870 [Sorghum bicolor]
gi|241930380|gb|EES03525.1| hypothetical protein SORBIDRAFT_03g032870 [Sorghum bicolor]
Length = 343
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 151 TTAPSSSISYVSAVRPLSLESD---RVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTI 207
T AP+ S +PL ++ + A QE+S I N KVG +IGK G
Sbjct: 117 TAAPAPDSQAGSDEKPLEAAAEAPQQERVAVAEAAAQEISRTIEVPNSKVGVLIGKAGET 176
Query: 208 IRALQSEAGAFISVGATMPECDERLIT--VTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265
IR LQ +GA+I + A + D +T V P S KA L+ S + E +
Sbjct: 177 IRNLQKSSGAWIQI-AKHADVDSNALTRSVLLVGKPGS----VDKAEQLIESVIAEAEAA 231
Query: 266 KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISEN 325
+G F S + + V +N++G ++GK G I +++ +G I I L+ ++
Sbjct: 232 RG--FGSGQSGSEQFDMAVPNNKIGLIIGKRGETIKDLQLKSGARIEFIPKIPLEGVTST 289
Query: 326 DRVVQISGEFSKVK 339
R+V+++G +++
Sbjct: 290 GRIVRVTGNKQQIE 303
>gi|256079872|ref|XP_002576208.1| rna-binding protein related [Schistosoma mansoni]
gi|353231011|emb|CCD77429.1| rna-binding protein related [Schistosoma mansoni]
Length = 666
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 22/187 (11%)
Query: 176 TLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GATMPECDERL 232
T+ + + V F+IL + GA+IGKGG I +Q++ A + + A P ER+
Sbjct: 33 TITLKPAKGNVHFKILVPSIAAGAIIGKGGEAITEIQNQTSAKVKMSKANAFYPGTTERV 92
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEK--GLDFSSNKGLLVNAR-----LVVA 285
+ + ++++ VF + E EK + + +G ++ R ++V
Sbjct: 93 CLIVGT----------IESILRVFQYISEKIYEKPESVPKTGCEGRVLTERHKQVKILVP 142
Query: 286 SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
++ G ++GKGG+ I E++ TG I++ Q K ++ +R V ++GE S+ +DA+ +
Sbjct: 143 NSTAGMIIGKGGSFIKELKDTTGVFIQV--SQKSKELNLAERCVTVAGELSQTRDAIALI 200
Query: 346 TGRLRDN 352
++ ++
Sbjct: 201 LSKIAED 207
>gi|361066701|gb|AEW07662.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158160|gb|AFG61426.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158161|gb|AFG61427.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158162|gb|AFG61428.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158163|gb|AFG61429.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158164|gb|AFG61430.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158166|gb|AFG61432.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158167|gb|AFG61433.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158168|gb|AFG61434.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158169|gb|AFG61435.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158170|gb|AFG61436.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158171|gb|AFG61437.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158172|gb|AFG61438.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158173|gb|AFG61439.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158174|gb|AFG61440.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158175|gb|AFG61441.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158176|gb|AFG61442.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158177|gb|AFG61443.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 247 PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
PAQ A++ V S + + +S K D ++K NARL+VA++Q+G L+GKGG I +MR
Sbjct: 18 PAQDALLRVHSVIAQESSVKDKDNDADKKGQQNARLLVANSQIGSLIGKGGNNIQKMRTE 77
Query: 307 TGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I D+L C D +V ISG+ VK A+Y+V+ L
Sbjct: 78 SGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKKALYSVSAFL 121
>gi|449447567|ref|XP_004141539.1| PREDICTED: uncharacterized protein LOC101203078 [Cucumis sativus]
gi|449481514|ref|XP_004156205.1| PREDICTED: uncharacterized LOC101203078 [Cucumis sativus]
Length = 787
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 5/212 (2%)
Query: 133 EILPDLHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVS-FRIL 191
EI D +I + + + S S V A PL E A D + + E + +++
Sbjct: 133 EISQDSAAEISQEDKTQELSKEESQPSEVEAAPPLQEEDISNAEQDQPSSESETTTYKME 192
Query: 192 CSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKA 251
N KVG +IGK G IR LQ +GA I + RL G A++
Sbjct: 193 VPNSKVGVLIGKAGDTIRYLQYNSGAKIQIMRDAEADPNRLTRPVEIIGTSENIKKAEEL 252
Query: 252 VVLVFSRLIEGTSE----KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
+ V + G S +GL S + +L V + +VG ++G+GG I ++ +
Sbjct: 253 INAVIAEADAGGSPSLIARGLTSSHSIATAEQIQLQVPNEKVGLIIGRGGETIKSLQTRS 312
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
G I++I L + +R ++++G+ +++
Sbjct: 313 GARIQLIPQNLPEGDESKERTIRVTGDKKQIE 344
>gi|410924031|ref|XP_003975485.1| PREDICTED: uncharacterized protein LOC101068273 [Takifugu rubripes]
Length = 652
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 33/223 (14%)
Query: 152 TAPSSS-ISYVSAVRPL----SLESDRVATLDAR-----------TQQQEVSFRILCSND 195
APSS+ Y RPL E+ +VAT D + + VS +
Sbjct: 42 AAPSSNEFGYGGQKRPLEDADQPETKKVATSDGKLLSFSAIGGMGGPPRSVSEEFKVPDG 101
Query: 196 KVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VG +IG+GG I LQ E+G I + +R +T+T PES +
Sbjct: 102 MVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGL--PES---------IQT 150
Query: 256 FSRLIEGTSEKGLD---FSSNKGLLVNAR-LVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
RL+ EKG F+ N G + + +++ +++ G ++GKGG I +++ G +
Sbjct: 151 AKRLLTEIVEKGRPAPAFNPNDGPGMTVQEIMIPASKAGLVIGKGGETIKSLQERAGVKM 210
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
+I D + D+ ++ISGE KV+ A V +RD F
Sbjct: 211 VMIQDGPQNTGA--DKPLRISGEPFKVQQAKEMVMDLIRDQGF 251
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSL 531
E VP+ ++G + G G + RL+Q SG K+ + G DR V ++G P+ Q A+ L
Sbjct: 95 EFKVPDGMVGFIIGRGGEQISRLQQESGCKIQIAPDSGGMPDRSVTLTGLPESIQTAKRL 154
Query: 532 LQAFILTG 539
L + G
Sbjct: 155 LTEIVEKG 162
>gi|363737066|ref|XP_003641794.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Gallus gallus]
Length = 564
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 103/215 (47%), Gaps = 35/215 (16%)
Query: 129 AVSQE--ILPDLHVDILSQRNSVLTTAPSSSISYVSA----VRPLSLESDRVATLDARTQ 182
AV+Q+ ++P L++ L ++ L+ PSS+ + +A P +L V L TQ
Sbjct: 342 AVNQQANLIPGLNLSALGIFSTGLSMLPSSAGARGAAAAAPYHPFALPEQEVVNLFIPTQ 401
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 402 -------------AVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGP--P 446
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S G ++GKGG ++
Sbjct: 447 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVN 497
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 498 ELQNLTSAEVIVPRDQ---TPDENEEVIVKIIGHF 529
>gi|240281620|gb|EER45123.1| KH domain RNA-binding protein [Ajellomyces capsulatus H143]
Length = 275
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT
Sbjct: 36 DEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT- 94
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
GP KA +V L+EG + G+ +SN G RL+++ NQ+G ++G+
Sbjct: 95 --GP---LQGTAKAYAIVAKGLLEGAPQLGMGGVASNNGTHP-VRLLISHNQMGTIIGRQ 148
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ G
Sbjct: 149 GLKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRG 205
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH-----DFS 398
T + + + P + L AS G + + + DFS
Sbjct: 206 TGTVLYNPAVRASVGGGPPNNSLGSGASTGGYGGRSYNRTGNGADFS 252
>gi|195029383|ref|XP_001987553.1| GH21981 [Drosophila grimshawi]
gi|193903553|gb|EDW02420.1| GH21981 [Drosophila grimshawi]
Length = 512
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E RIL + GAVIGKGG I+ ++++ A +SV + + ER I ++A
Sbjct: 16 RNRRNEDMVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDDS--QGPERTIQISAD- 72
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTI 299
+ + + + +++ E+ +F + RL++ + GC++GKGG
Sbjct: 73 ---------IDSTLEIITEMLKYFEERDDEF--------DVRLLIHQSLAGCVIGKGGQK 115
Query: 300 ISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
I E+R G + LK S DRVVQ G+ ++V DAV V RD
Sbjct: 116 IKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQTQVIDAVREVITLTRDTPI 168
Query: 355 SGTL 358
G +
Sbjct: 169 KGPI 172
Score = 45.8 bits (107), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+++ G++ G+ G + R+R S A + + EP GS DRI+ ISGTP + Q
Sbjct: 436 NNSTQVTIPKDLAGAIIGKGGGRIRRIRNESSAYITIDEPLPGSNDRIITISGTPKQIQM 495
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 496 AQYLLQ 501
>gi|302655788|ref|XP_003019678.1| hypothetical protein TRV_06307 [Trichophyton verrucosum HKI 0517]
gi|291183415|gb|EFE39033.1| hypothetical protein TRV_06307 [Trichophyton verrucosum HKI 0517]
Length = 483
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 156/369 (42%), Gaps = 43/369 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 131 VHIRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 182
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 183 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIREIQ 240
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 241 EASGARLNA-SDSCLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 297
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQ--PPLTQGMDHLGLSH 413
TRS + PY +G S+ ++ + P G+ ++
Sbjct: 298 YATRSGGPAGVVPGGMQVVPYVPQPAGGQYGHPDSLRRNNPQANRAAPGGYGVPYMQQPA 357
Query: 414 --------SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
SL +SP+ T T G H G Q L H G + A
Sbjct: 358 PHPHAPQPSLHYGASPR--TGYTGAGPH----QPAPYGAPQPL--HGGHVPPNGPPMGAA 409
Query: 466 VTNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT +
Sbjct: 410 VPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQE 469
Query: 524 ETQAAQSLL 532
Q A +L
Sbjct: 470 CNQMALYML 478
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT 236
+ A Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T
Sbjct: 406 MGAAVPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTIT 465
Query: 237 ASEGPESRYSPAQKAVVLVFSRL 259
++ E Q A+ +++SRL
Sbjct: 466 GTQ--ECN----QMALYMLYSRL 482
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 412 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 467
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 468 QECNQMALYMLYSRL 482
>gi|383858850|ref|XP_003704912.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Megachile rotundata]
Length = 624
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITV 235
T QE +F + N VGA+IG G+ IR + +GA + + + ER +T+
Sbjct: 401 TDTQETAF-LYIPNSSVGAIIGTKGSHIRNIIRFSGASVKIAPIEQDKPAEQQTERKVTI 459
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
S PES++ KA L+F ++ E G D + + ++V S QVG ++GK
Sbjct: 460 VGS--PESQW----KAQYLIFEKMREEGFVAGTD-----DVRLTIEILVPSAQVGRIIGK 508
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
GG + E+++VTG+ I++ Q ++ + V I G F V+ A
Sbjct: 509 GGQNVRELQRVTGSIIKLSEQQSTSPSADEEATVHIIGPFFSVQSA 554
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 148/362 (40%), Gaps = 82/362 (22%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL +D VGA+IG+ G+ IR + A + +VG+ E+ IT+
Sbjct: 183 RQTDFPLRILVQSDMVGAIIGRQGSTIRQITQMTRARVDVHRKDNVGSL-----EKAITI 237
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + A K ++ V + S NKG + +++ +N +G ++GK
Sbjct: 238 YGN--PEN-CTNACKKILEVMQQEAN---------SINKG-EITLKILAHNNLIGRIIGK 284
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
GGT I + + T T I + S + + +R++ + G + A ++ +LR
Sbjct: 285 GGTTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGTIENMSKAESMISSKLR----- 338
Query: 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415
+S + L +P S + G+H P+ M G+ +S
Sbjct: 339 --------QSYENDLQAMAPQSMMFP----GLH------------PMAM-MSTAGMGYSS 373
Query: 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV 475
P L GS + L +G A T T + +
Sbjct: 374 RGPG--------------LYGSGPAPYPYQASLPPQQG--------VPATDTQETAFLYI 411
Query: 476 PENVIGSVYGENGSNLLRLRQISGAKVIV-----HEPRLGSTDRIVVISGTPDETQAAQS 530
P + +G++ G GS++ + + SGA V + +P T+R V I G+P+ AQ
Sbjct: 412 PNSSVGAIIGTKGSHIRNIIRFSGASVKIAPIEQDKPAEQQTERKVTIVGSPESQWKAQY 471
Query: 531 LL 532
L+
Sbjct: 472 LI 473
>gi|431902890|gb|ELK09105.1| Heterogeneous nuclear ribonucleoprotein K [Pteropus alecto]
Length = 438
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 307 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 366
Query: 530 SLLQAFIL 537
LLQ I
Sbjct: 367 YLLQNSIY 374
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 303 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 358
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 359 QDQIQNAQY 367
>gi|47213422|emb|CAF94921.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 316 TTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKIDEPLEGSEDRIITITGTQDQIQNAQ 375
Query: 530 SLLQ 533
LLQ
Sbjct: 376 FLLQ 379
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 62/205 (30%)
Query: 138 LHVDILSQRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKV 197
+ +I Q + + A S+ RP ++ + +R + V RIL +
Sbjct: 1 MDTEIDQQEETSFSNAESN------GKRPAEDADEQKSFKRSRNSDEMVELRILLQSKNA 54
Query: 198 GAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFS 257
GAVIGKGG I+AL+++ +YS
Sbjct: 55 GAVIGKGGKNIKALRTDY---------------------------QQYS----------- 76
Query: 258 RLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
G+DF RL++ + G ++G G I E+R+ T TSI++ +
Sbjct: 77 ---------GMDFD------CELRLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQEC 121
Query: 318 LLKCISENDRVVQISGEFSKVKDAV 342
C DRVV + G+ +V + +
Sbjct: 122 ---CPQSTDRVVLVGGKMERVVECI 143
>gi|426258121|ref|XP_004022667.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
Length = 404
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 330 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 389
Query: 530 SLLQ 533
LLQ
Sbjct: 390 YLLQ 393
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 326 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 381
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 382 QDQIQNAQY 390
>gi|198416446|ref|XP_002119674.1| PREDICTED: similar to rCG61051 [Ciona intestinalis]
Length = 465
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 15/164 (9%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGA--TMPECDERLIT 234
+D + ++ R+L ++G +IGK GT I +SE+GA I++ + ++PE R++T
Sbjct: 1 MDTDNEDMIITVRMLMIGKEIGGIIGKAGTNIAKFRSESGARITISSEQSVPE---RIVT 57
Query: 235 VTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLG 294
+T G KAV L+ ++ GL + + V RL+V ++Q G ++G
Sbjct: 58 ITGGRGQ------IHKAVELIAGKM-HSDINSGLSNCATNTVPVTIRLIVPASQCGSIIG 110
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKV 338
KGG I E+R TG +I++ S+ L C ++R V +SG S +
Sbjct: 111 KGGVKIKEIRDTTGCAIQVQSEMLPNC---SERTVTLSGAPSTI 151
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
L V + +GC++GKGG+ I E+R ++G I+I +++ K DR + I G + A
Sbjct: 280 LTVGNEFMGCIIGKGGSRIKEIRMLSGAQIQI--NKVEKEDESVDRKITIQGSAEAISLA 337
Query: 342 VYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAV 393
Y +T L N FSG + +T S S L P + GV SV+V
Sbjct: 338 YYLIT--LSVNMFSG--DKWQTESMRGQRDFGPTGSLLGQPPATGVFGSVSV 385
>gi|307213191|gb|EFN88688.1| RNA-binding protein Nova-1 [Harpegnathos saltator]
Length = 514
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 116/252 (46%), Gaps = 33/252 (13%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ---QQEVSFRILCSNDKVGAVIGK 203
+S + T PS I+ S RPL +++ AT + ++L GA+IGK
Sbjct: 4 DSGMETCPSPEIAD-SRKRPLDCDAENGATKRSHYGSGGDGTYHLKVLVPGVAAGAIIGK 62
Query: 204 GGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I LQ + GA + + + P ER+ +T S +A++ V ++
Sbjct: 63 GGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITGS----------VEAIMAVMDFIM 112
Query: 261 EG-------TSEKGLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
E TS+ +DF S K +++V ++ G ++GK G I ++++ +G+
Sbjct: 113 EKIREKPDLTSKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSY 172
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSV 369
++I Q K +S +R + + GE ++A+ + ++ D+ SGT LN + + V
Sbjct: 173 VQI--SQKAKDLSLQERCITVIGEKENNRNALLMILAKVADDPQSGTCLNVSYADVSGPV 230
Query: 370 LTET---SPYSR 378
SPY++
Sbjct: 231 ANYNPTGSPYAQ 242
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 16/126 (12%)
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT----VEI 473
P P + +HL +S G G +Q L L S S + + N+ V+I
Sbjct: 380 PFDPFRQNNTAASAIHLNNNS-FGLGTNQ--------LSLVSKSPTQVDANSKETKKVDI 430
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAAQS 530
+ E ++G++ G G L+ ++ +SGA + + + + G+ +RIV I+G P+ AQ
Sbjct: 431 EIAEVIVGAILGPGGRALIEIQHLSGANIQISKKGMFAPGTRNRIVTITGYPNAINTAQY 490
Query: 531 LLQAFI 536
L++ I
Sbjct: 491 LIEQRI 496
>gi|302406408|ref|XP_003001040.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
gi|261360298|gb|EEY22726.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
Length = 359
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 86/170 (50%), Gaps = 9/170 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 44 QAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITGGCEAI 103
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
SR A +V L+EG G+ +L+++ NQ+G ++G+ G I
Sbjct: 104 SR------AYAIVAQALLEGAPSLGMGGVPQSNGTHPIKLLISHNQMGTIIGRQGLKIKH 157
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
++ V+G +R+++ + + S +R+V++ G ++ A++ ++ L D+
Sbjct: 158 IQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPDGIRAAIWEISKCLVDD 204
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 422 KLWTAQTVTGVHLR------GSSDVGRGWS---QGLSHHKGGLELGSGSKSAIVTNTTVE 472
K ++ V GVH R G + R ++ Q L +G LG G ++
Sbjct: 79 KAGVSKVVQGVHDRVLTITGGCEAISRAYAIVAQAL--LEGAPSLGMGGVPQSNGTHPIK 136
Query: 473 IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
+++ N +G++ G G + ++ +SG +++ + L ST+RIV + GTPD +AA
Sbjct: 137 LLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERIVEVQGTPDGIRAA 193
>gi|74225344|dbj|BAE31602.1| unnamed protein product [Mus musculus]
Length = 459
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|326935103|ref|XP_003213618.1| PREDICTED: UPF0553 protein C9orf64-like, partial [Meleagris
gallopavo]
Length = 400
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 52 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 111
Query: 530 SLLQ 533
LLQ
Sbjct: 112 YLLQ 115
>gi|404351641|ref|NP_998156.3| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 431
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 458 GSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G GS S I T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+
Sbjct: 344 GRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 403
Query: 517 VISGTPDETQAAQSLLQ 533
I+GT D+ Q AQ LLQ
Sbjct: 404 TITGTQDQIQNAQYLLQ 420
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V R+L + GAVIGKGG I+AL+++ A +S
Sbjct: 19 TNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVS 78
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++V+A + ++ + L E G DF
Sbjct: 79 VPDSSGP---ERILSVSAD------IDTIGEILLKIIPTLEEYQHYSGTDFD------CE 123
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
RL++ + G ++G G I E+R+ T T+I++ + C DRVV + G+ +V
Sbjct: 124 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVLVGGKPERVV 180
Query: 340 DAV 342
+ +
Sbjct: 181 ECI 183
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 348 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 403
Query: 330 QISGEFSKVKDAVY 343
I+G ++++A Y
Sbjct: 404 TITGTQDQIQNAQY 417
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 409
>gi|358335626|dbj|GAA29562.2| RNA-binding protein Nova [Clonorchis sinensis]
Length = 673
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 116/246 (47%), Gaps = 30/246 (12%)
Query: 161 VSAVRPLSL--ESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAF 218
+S +PL L D + + V F+IL + GA+IGKGG I +Q++ A
Sbjct: 1 MSGGKPLFLTEHHDDWTDVSPADYEGNVHFKILVPSIAAGAIIGKGGEAITDIQNKTSAK 60
Query: 219 ISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF--SSN 273
+ + P ER+ + + +++ VF + E EK S+N
Sbjct: 61 VKMSKANDFYPGTTERVCLIVGT----------IDSILRVFQYISEKIYEKPESILRSTN 110
Query: 274 KGLLVNA------RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDR 327
KG + A +++V ++ G ++GKGG+ I E+++ TG I++ Q K ++ +R
Sbjct: 111 KGGRMPAERHKQVKILVPNSTAGIIIGKGGSFIKEVKESTGVFIQV--SQKSKELNLAER 168
Query: 328 VVQISGEFSKVKDAVYNVTGRLRDNHFSGTL-NTART---RSTSSVLTETSPYSRLKDPA 383
V ++GE + +AV + ++ D+ S + N + R +S SPY+ + +
Sbjct: 169 CVTVAGELPQTFEAVKQLLFKIADDPQSSSCPNISYAEVPRPVASAYPTGSPYALVLG-S 227
Query: 384 SFGVHS 389
SFG+++
Sbjct: 228 SFGINN 233
>gi|66910286|gb|AAH96867.1| Heterogeneous nuclear ribonucleoprotein K, like [Danio rerio]
gi|182889168|gb|AAI64732.1| Hnrpkl protein [Danio rerio]
Length = 431
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 458 GSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G GS S I T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+
Sbjct: 344 GRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 403
Query: 517 VISGTPDETQAAQSLLQ 533
I+GT D+ Q AQ LLQ
Sbjct: 404 TITGTQDQIQNAQYLLQ 420
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V R+L + GAVIGKGG I+AL+++ A +S
Sbjct: 19 TNGKRPAEDMDEEQAFKRSRNTDEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVS 78
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++V+A + ++ + L E G DF
Sbjct: 79 VPDSSGP---ERILSVSAD------IDTIGEILLKIIPTLEEYQHYSGTDFD------CE 123
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
RL++ + G ++G G I E+R+ T T+I++ + C DRVV + G+ +V
Sbjct: 124 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVLVGGKPERVV 180
Query: 340 DAV 342
+ +
Sbjct: 181 ECI 183
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 348 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 403
Query: 330 QISGEFSKVKDAVY 343
I+G ++++A Y
Sbjct: 404 TITGTQDQIQNAQY 417
Score = 38.5 bits (88), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 356 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 409
>gi|327263405|ref|XP_003216510.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Anolis
carolinensis]
Length = 425
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 530 SLLQ 533
LLQ
Sbjct: 411 YLLQ 414
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDTEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 79 SGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDFD------CELRLL 123
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C +DRVV I G+ +V + +
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSSDRVVLIGGKPDRVVECI 179
>gi|74198765|dbj|BAE30613.1| unnamed protein product [Mus musculus]
Length = 450
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGERPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 417
>gi|74144445|dbj|BAE36070.1| unnamed protein product [Mus musculus]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|260814700|ref|XP_002602052.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
gi|229287357|gb|EEN58064.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
Length = 499
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 23/165 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEGPES 243
V RIL + GA+IGK G I+ L+SE A ++V P+C ER++T++A
Sbjct: 43 VDLRILLQSKNAGAIIGKQGLNIKRLRSEYKATVTV----PDCTGPERILTISADLNTAC 98
Query: 244 RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA--RLVVASNQVGCLLGKGGTIIS 301
A +L ++E + + +K L N R++V +Q GC++G+ G I
Sbjct: 99 -------ACLLDIIPVLEDYQKH---YQEHKDLNFNCELRMLVHQSQAGCIIGRAGFKIK 148
Query: 302 EMRKVTGTSIRIISDQLLKCI-SENDRVVQISGEFSKVKDAVYNV 345
E+R+ T +I++ S+ C+ +RVV ++G+ K A+ +
Sbjct: 149 ELREQTEANIKVYSE----CMPGSTERVVALTGKPEKCVGAIKKI 189
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ ++ +P+ + GS+ G GS + +R+ S A++ + EP GSTDRI+ ISG D+ + A
Sbjct: 408 TSTQVTIPKELAGSIIGRGGSRIRTIRERSEAQIKIDEPLPGSTDRIITISGDNDQIRNA 467
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 468 QFLLQ 472
>gi|71897277|ref|NP_001026556.1| heterogeneous nuclear ribonucleoprotein K [Gallus gallus]
gi|75571241|sp|Q5ZIQ3.1|HNRPK_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|53135051|emb|CAG32390.1| hypothetical protein RCJMB04_24e23 [Gallus gallus]
Length = 427
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 530 SLLQ 533
LLQ
Sbjct: 413 YLLQ 416
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 27/187 (14%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V RIL + GAVIGKGG I+AL+++ A +S
Sbjct: 15 TNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVS 74
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE----KGLDFSSNKG 275
V ++ P ER+++++A + + + ++I E KG DF
Sbjct: 75 VPDSSGP---ERILSISAD----------TETIGEILKKIIPTLEEYQHYKGSDFD---- 117
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335
RL++ + G ++G G I E+R+ T T+I++ + C DRVV I G+
Sbjct: 118 --CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVLIGGKP 172
Query: 336 SKVKDAV 342
+V + +
Sbjct: 173 DRVVECI 179
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 259 LIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
L EG S G D+S G ++ ++ + + G ++GKGG I ++R +G
Sbjct: 326 LFEGGS--GYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA 383
Query: 310 SIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
SI+I D+ L+ DR++ I+G ++++A Y
Sbjct: 384 SIKI--DEPLE--GSEDRIITITGTQDQIQNAQY 413
>gi|119583082|gb|EAW62678.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
gi|119583085|gb|EAW62681.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|126330639|ref|XP_001363707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
gi|395515329|ref|XP_003761858.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Sarcophilus
harrisii]
Length = 471
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 396 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 455
Query: 530 SLLQ 533
LLQ
Sbjct: 456 YLLQ 459
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 392 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 447
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 448 QDQIQNAQY 456
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 395 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 448
>gi|426219907|ref|XP_004004159.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Ovis aries]
Length = 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPQSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|126723252|ref|NP_001075594.1| heterogeneous nuclear ribonucleoprotein K [Oryctolagus cuniculus]
gi|12230546|sp|O19049.1|HNRPK_RABIT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|2644968|emb|CAA05815.1| hnRNP-K protein [Oryctolagus cuniculus]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTSE---KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHFKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|72164650|ref|XP_794805.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 341
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 22/156 (14%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECD--ERLITVTASEG 240
Q +V+FR+L S++K G VIGKGG I+ L+SE A +++ P+ +R++ + A+
Sbjct: 6 QSQVTFRLLVSSNKAGGVIGKGGQNIKRLRSEYNATVNI----PDSSGPDRVLQIVAN-- 59
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG--LLVNARLVVASNQVGCLLGKGGT 298
+++ + + LI E+ FS + ++V ++QVG ++G+GG+
Sbjct: 60 -------SRENGLDIIKELIPLIREEVSPFSDGEADPYTTTLSVLVQTSQVGAIIGRGGS 112
Query: 299 IISEMRKVTGTSIRIISDQLLKCI-SENDRVVQISG 333
I E+R+ T T +++ L +C+ +R VQI+G
Sbjct: 113 KIKELRQSTETKVKV----LQECLPYSTERRVQING 144
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P +++G+V G G + +R S A++ + P + DR++ I GT ++ A
Sbjct: 266 TTTQVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITIRGTQEQVSHA 325
Query: 529 QSLLQAFI 536
Q LLQ I
Sbjct: 326 QFLLQNCI 333
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 34/51 (66%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ND VGAVIG+GG IR ++S + A I + +PE ++R+IT+ ++
Sbjct: 269 QVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITIRGTQ 319
>gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
gi|14165435|ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
gi|16923998|ref|NP_476482.1| heterogeneous nuclear ribonucleoprotein K [Rattus norvegicus]
gi|114625188|ref|XP_001155028.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 17
[Pan troglodytes]
gi|114625190|ref|XP_001155252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 21
[Pan troglodytes]
gi|126334813|ref|XP_001368466.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Monodelphis domestica]
gi|296189583|ref|XP_002742833.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Callithrix jacchus]
gi|332236649|ref|XP_003267512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Nomascus leucogenys]
gi|332236653|ref|XP_003267514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Nomascus leucogenys]
gi|338719650|ref|XP_003364038.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475601|ref|XP_003809222.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2 [Pan
paniscus]
gi|397475605|ref|XP_003809224.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4 [Pan
paniscus]
gi|402897757|ref|XP_003911911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Papio anubis]
gi|402897759|ref|XP_003911912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Papio anubis]
gi|403300940|ref|XP_003941170.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Saimiri boliviensis boliviensis]
gi|410978215|ref|XP_003995491.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Felis catus]
gi|410978217|ref|XP_003995492.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Felis catus]
gi|426362133|ref|XP_004048235.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Gorilla gorilla gorilla]
gi|426362135|ref|XP_004048236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Gorilla gorilla gorilla]
gi|48429097|sp|P61980.1|HNRPK_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=dC stretch-binding protein;
Short=CSBP
gi|48429103|sp|P61978.1|HNRPK_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=Transformation up-regulated
nuclear protein; Short=TUNP
gi|48429104|sp|P61979.1|HNRPK_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|241478|gb|AAB20770.1| heterogeneous nuclear ribonucleoprotein complex K [Homo sapiens]
gi|409389|dbj|BAA04566.1| dC-stretch binding protein [Rattus norvegicus]
gi|12847547|dbj|BAB27614.1| unnamed protein product [Mus musculus]
gi|15929044|gb|AAH14980.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|119583079|gb|EAW62675.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Homo
sapiens]
gi|148709316|gb|EDL41262.1| mCG6893, isoform CRA_a [Mus musculus]
gi|149039793|gb|EDL93909.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Rattus
norvegicus]
gi|380812324|gb|AFE78036.1| heterogeneous nuclear ribonucleoprotein K isoform b [Macaca
mulatta]
gi|410337441|gb|JAA37667.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401355|gb|JAA47567.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|332236655|ref|XP_003267515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Nomascus leucogenys]
gi|332832094|ref|XP_001154460.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 8 [Pan
troglodytes]
gi|338719652|ref|XP_003364039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475607|ref|XP_003809225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5 [Pan
paniscus]
gi|402897763|ref|XP_003911914.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Papio anubis]
gi|410978219|ref|XP_003995493.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Felis catus]
gi|426362137|ref|XP_004048237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Gorilla gorilla gorilla]
gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus]
gi|26353476|dbj|BAC40368.1| unnamed protein product [Mus musculus]
gi|194374597|dbj|BAG62413.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|449669385|ref|XP_002157937.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Hydra magnipapillata]
Length = 549
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 141/357 (39%), Gaps = 64/357 (17%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-----ATMPECDERLITVTAS 238
Q+ RIL +D V ++GKGG I A+Q+ G I + CDE ++T+
Sbjct: 136 QQYPCRILVPSDMVKVLLGKGGCTITAMQTNTGTKIDIHRDKGPCYRGPCDETIVTIKGD 195
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PES +S A + ++ FS E D + K + + +L+ G ++GKGG
Sbjct: 196 --PES-FSKAIREILSAFSNEYEKR-----DTDARKPIQL--KLLAHDLLCGRIIGKGGN 245
Query: 299 IISEMRKVTGTSIRIISDQLLK---------CISENDRVVQISGEFSKVKDAVYNVTGRL 349
+ + ++ + S IIS+ + + + +RV+ I G + A ++ +L
Sbjct: 246 NLKQTKQESNVSKLIISNSIYEESSQMIPTGFVCTGERVITIEGSLDAICIAESLISKKL 305
Query: 350 RDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHL 409
R+ N T L A+FG G +
Sbjct: 306 REYMEKDARNQYNTNMG------------LYHGAAFG------------------GQINY 335
Query: 410 GLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
G + + P+++ TV + L H G L + +N
Sbjct: 336 GYNPQM----YPRMYGGYTVDTFGYPAYPSSMNNYPGILGH--GYLPYTPPQQVPYYSNF 389
Query: 470 TVE---IIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
E I++P +G++ G NG + R++Q SGA++ V + G ++ ++ G PD
Sbjct: 390 EPETTCILIPTKEVGAIIGRNGGYISRMKQYSGAQIRVIKGDEGGESKVEIV-GPPD 445
Score = 39.7 bits (91), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 38/185 (20%)
Query: 190 ILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS--- 246
IL +VGA+IG+ G I ++ +GA I V + EG ES+
Sbjct: 396 ILIPTKEVGAIIGRNGGYISRMKQYSGAQIRV-------------IKGDEGGESKVEIVG 442
Query: 247 PAQ---KAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEM 303
P +A + VFS++ E + +S + + +V + VG ++GK G ++ ++
Sbjct: 443 PPDCQWRASLCVFSKIKETMK---VAYSEAQ---LKTEFIVPGSCVGRVIGKKGQVVQDI 496
Query: 304 RKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTART 363
+ I + D+ ND V I+G F+ + A+ R+RD ++ AR
Sbjct: 497 QDKAQADIEVPKDKQ----GANDVPVYITGTFNGTQIAI----SRIRD-----IVHRARQ 543
Query: 364 RSTSS 368
+S S
Sbjct: 544 KSDPS 548
>gi|387018122|gb|AFJ51179.1| Heterogeneous nuclear ribonucleoprotein K-like [Crotalus
adamanteus]
Length = 426
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 530 SLLQ 533
LLQ
Sbjct: 411 YLLQ 414
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDIEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 79 SGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDFD------CELRLL 123
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C +DRVV I G+ +V + +
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSSDRVVLIGGKPDRVVECI 179
>gi|354500000|ref|XP_003512091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Cricetulus griseus]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|119583080|gb|EAW62676.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Homo
sapiens]
Length = 462
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 388 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 447
Query: 530 SLLQ 533
LLQ
Sbjct: 448 YLLQ 451
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 384 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 439
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 440 QDQIQNAQY 448
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 387 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 440
>gi|354500004|ref|XP_003512093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 4
[Cricetulus griseus]
Length = 439
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|354499998|ref|XP_003512090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Cricetulus griseus]
Length = 464
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|392513715|ref|NP_001254774.1| heterogeneous nuclear ribonucleoprotein K [Sus scrofa]
Length = 463
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPQSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|363744460|ref|XP_003643054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Gallus gallus]
Length = 426
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 352 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 411
Query: 530 SLLQ 533
LLQ
Sbjct: 412 YLLQ 415
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 19/183 (10%)
Query: 161 VSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220
+ RP + A +R + V RIL + GAVIGKGG I+AL+++ A +S
Sbjct: 15 TNGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVS 74
Query: 221 V-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN 279
V ++ P ER+++++A + + + L E KG DF
Sbjct: 75 VPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDFD------CE 119
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
RL++ + G ++G G I E+R+ T T+I++ + C DRVV I G+ +V
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVLIGGKPDRVV 176
Query: 340 DAV 342
+ +
Sbjct: 177 ECI 179
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 259 LIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
L EG S G D+S G ++ ++ + + G ++GKGG I ++R +G
Sbjct: 325 LFEGGS--GYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA 382
Query: 310 SIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
SI+I D+ L+ DR++ I+G ++++A Y
Sbjct: 383 SIKI--DEPLE--GSEDRIITITGTQDQIQNAQY 412
>gi|281337729|gb|EFB13313.1| hypothetical protein PANDA_003005 [Ailuropoda melanoleuca]
Length = 453
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|193784719|dbj|BAG53872.1| unnamed protein product [Homo sapiens]
gi|193788384|dbj|BAG53278.1| unnamed protein product [Homo sapiens]
Length = 223
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 149 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 208
Query: 530 SLLQ 533
LLQ
Sbjct: 209 YLLQ 212
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 145 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 200
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 201 QDQIQNAQY 209
>gi|334333295|ref|XP_003341704.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
Length = 470
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 396 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 455
Query: 530 SLLQ 533
LLQ
Sbjct: 456 YLLQ 459
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 392 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 447
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 448 QDQIQNAQY 456
Score = 38.5 bits (88), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 395 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 448
>gi|77736071|ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|426219903|ref|XP_004004157.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Ovis aries]
gi|426219905|ref|XP_004004158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ovis aries]
gi|426224282|ref|XP_004006301.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
gi|426256846|ref|XP_004022048.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Ovis aries]
gi|108860777|sp|Q3T0D0.1|HNRPK_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|74354615|gb|AAI02451.1| Heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|296484523|tpg|DAA26638.1| TPA: heterogeneous nuclear ribonucleoprotein K [Bos taurus]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPQSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|225682425|gb|EEH20709.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 364
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 42 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 97
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
A KA +V L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 98 --LQGAAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 154
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 155 YIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 207
>gi|119583083|gb|EAW62679.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_e [Homo
sapiens]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|119583084|gb|EAW62680.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_f [Homo
sapiens]
Length = 440
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
Score = 38.5 bits (88), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 364 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 417
>gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|14165439|ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197101649|ref|NP_001126766.1| heterogeneous nuclear ribonucleoprotein K [Pongo abelii]
gi|388454448|ref|NP_001253875.1| heterogeneous nuclear ribonucleoprotein K [Macaca mulatta]
gi|114625208|ref|XP_001155079.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 18
[Pan troglodytes]
gi|114625210|ref|XP_001155315.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 22
[Pan troglodytes]
gi|149758457|ref|XP_001489114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Equus caballus]
gi|296189573|ref|XP_002742828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Callithrix jacchus]
gi|296189575|ref|XP_002742829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Callithrix jacchus]
gi|296189579|ref|XP_002742831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Callithrix jacchus]
gi|301758414|ref|XP_002915066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Ailuropoda melanoleuca]
gi|332236647|ref|XP_003267511.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Nomascus leucogenys]
gi|332236651|ref|XP_003267513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Nomascus leucogenys]
gi|344272026|ref|XP_003407837.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Loxodonta africana]
gi|395819298|ref|XP_003783031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Otolemur
garnettii]
gi|397475599|ref|XP_003809221.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1 [Pan
paniscus]
gi|397475603|ref|XP_003809223.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3 [Pan
paniscus]
gi|397475609|ref|XP_003809226.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6 [Pan
paniscus]
gi|402897753|ref|XP_003911909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Papio anubis]
gi|402897755|ref|XP_003911910.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Papio anubis]
gi|402897761|ref|XP_003911913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Papio anubis]
gi|403300938|ref|XP_003941169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Saimiri boliviensis boliviensis]
gi|403300942|ref|XP_003941171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Saimiri boliviensis boliviensis]
gi|403300944|ref|XP_003941172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Saimiri boliviensis boliviensis]
gi|410978211|ref|XP_003995489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Felis catus]
gi|410978213|ref|XP_003995490.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Felis catus]
gi|426362129|ref|XP_004048233.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Gorilla gorilla gorilla]
gi|426362131|ref|XP_004048234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Gorilla gorilla gorilla]
gi|75056718|sp|Q5R5H8.1|HNRPK_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|75075750|sp|Q4R4M6.1|HNRPK_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|12653175|gb|AAH00355.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|13879427|gb|AAH06694.1| Hnrpk protein [Mus musculus]
gi|26347481|dbj|BAC37389.1| unnamed protein product [Mus musculus]
gi|38197650|gb|AAH61867.1| Hnrpk protein [Rattus norvegicus]
gi|48145659|emb|CAG33052.1| HNRPK [Homo sapiens]
gi|55732576|emb|CAH92988.1| hypothetical protein [Pongo abelii]
gi|58475965|gb|AAH89328.1| Hnrpk protein [Mus musculus]
gi|61359196|gb|AAX41682.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|67971214|dbj|BAE01949.1| unnamed protein product [Macaca fascicularis]
gi|74139420|dbj|BAE40851.1| unnamed protein product [Mus musculus]
gi|74141211|dbj|BAE35915.1| unnamed protein product [Mus musculus]
gi|74178242|dbj|BAE29905.1| unnamed protein product [Mus musculus]
gi|74183280|dbj|BAE22563.1| unnamed protein product [Mus musculus]
gi|74185026|dbj|BAE39121.1| unnamed protein product [Mus musculus]
gi|119583081|gb|EAW62677.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_c [Homo
sapiens]
gi|123979648|gb|ABM81653.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|123994453|gb|ABM84828.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|158256108|dbj|BAF84025.1| unnamed protein product [Homo sapiens]
gi|197692227|dbj|BAG70077.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197692481|dbj|BAG70204.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|351696771|gb|EHA99689.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
gi|380812328|gb|AFE78038.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|380812330|gb|AFE78039.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|410337439|gb|JAA37666.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401379|gb|JAA47578.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|440636503|gb|ELR06422.1| hypothetical protein GMDG_02138 [Geomyces destructans 20631-21]
Length = 365
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 153/355 (43%), Gaps = 61/355 (17%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
+++ R + S+ + G +IGK G + L+ E G V + +R++T+T
Sbjct: 47 QLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRILTITGG------ 100
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA------RLVVASNQVGCLLGKGGT 298
KA +V L+EG G+ G LV+ +L+++ NQ+G ++G+ G
Sbjct: 101 CDAISKAYAIVAKALLEGAPMMGM------GGLVSTTGTHPIKLLISHNQMGTIIGRQGL 154
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I ++ +G +R+++ + + S +R+V++ G ++ A++ + L D+
Sbjct: 155 KIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQKAIWEMCKCLIDDW----- 206
Query: 359 NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
R T +VL +P R + G + ++S P + + + S
Sbjct: 207 ----ERGTGTVL--YNPVVRTQTGGGQGGIRNEG--REYSSPRVMRTGNGADFSQ----- 253
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPEN 478
+P+ + ++ GRG +H + G E+ T I +P +
Sbjct: 254 EAPRTFNRRS-------DGETAGRGVP---THDENGEEI-----------QTQNISIPSD 292
Query: 479 VIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
++G + G GS + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 293 MVGCIIGRGGSKISEIRKTSGARISIAKAPHDDTGERMFTIMGSAKANETALYLL 347
>gi|363744462|ref|XP_425032.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Gallus gallus]
Length = 430
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 414
Query: 530 SLLQ 533
LLQ
Sbjct: 415 YLLQ 418
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 22 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 81
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 82 SGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDFD------CELRLL 126
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 127 IHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVLIGGKPDRVVECI 182
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 259 LIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLGKGGTIISEMRKVTGT 309
L EG S G D+S G ++ ++ + + G ++GKGG I ++R +G
Sbjct: 328 LFEGGS--GYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGA 385
Query: 310 SIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
SI+I D+ L+ DR++ I+G ++++A Y
Sbjct: 386 SIKI--DEPLE--GSEDRIITITGTQDQIQNAQY 415
>gi|348528027|ref|XP_003451520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 429
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 458 GSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G GS S I T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+
Sbjct: 342 GRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 401
Query: 517 VISGTPDETQAAQSLLQ 533
I+GT D+ Q AQ LLQ
Sbjct: 402 TITGTQDQIQNAQYLLQ 418
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+ RP + A +R + V R+L + GAVIGKGG I+AL+++ A +SV
Sbjct: 20 NGKRPAEDMDEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSV 79
Query: 222 -GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
++ P ER+++V AS + ++ + L E G+DF
Sbjct: 80 PDSSGP---ERILSVNAS------IDTIGEILLKIIPTLEEYQHYSGIDFD------CEL 124
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
RL++ + G ++G G I E+R+ T T+I++ + C DRVV + G+ +V +
Sbjct: 125 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVLVGGKPERVVE 181
Query: 341 AV 342
+
Sbjct: 182 CI 183
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 346 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 401
Query: 330 QISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
I+G ++++A Y + +R +SG
Sbjct: 402 TITGTQDQIQNAQYLLQNSVR--QYSGRF 428
Score = 38.5 bits (88), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 354 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 407
>gi|322801544|gb|EFZ22205.1| hypothetical protein SINV_16423 [Solenopsis invicta]
Length = 327
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 261 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 320
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 321 QYLLQ 325
Score = 45.1 bits (105), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
+ S ++ D GA+IGKGG IR ++S++GA I++ +P ++R+IT+T
Sbjct: 259 NKTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITG 312
>gi|62088704|dbj|BAD92799.1| heterogeneous nuclear ribonucleoprotein K isoform a variant [Homo
sapiens]
Length = 442
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 367 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 426
Query: 530 SLLQ 533
LLQ
Sbjct: 427 YLLQ 430
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 11 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 70
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 71 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 121
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 122 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC---CPHSTDRVVL 172
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 173 IGGKPDRVVECI 184
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 363 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 418
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 419 QDQIQNAQY 427
>gi|426256848|ref|XP_004022049.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Ovis aries]
Length = 466
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPQSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|74177637|dbj|BAE38921.1| unnamed protein product [Mus musculus]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LKSDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|354500002|ref|XP_003512092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Cricetulus griseus]
Length = 440
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|307204631|gb|EFN83253.1| Heterogeneous nuclear ribonucleoprotein K [Harpegnathos saltator]
Length = 207
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 141 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 200
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 201 QYLLQ 205
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
+ S ++ D GA+IGKGG IR ++S++GA I++ +P ++R+IT+T
Sbjct: 140 KTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITG 192
>gi|45361501|ref|NP_989327.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
gi|39794355|gb|AAH64170.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 322 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQIQNAQ 381
Query: 530 SLLQ 533
LLQ
Sbjct: 382 FLLQ 385
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 79 SGP---ERILSISAD------IETIGEILKKIIPTLEEYQHFKGNDFD------CELRLL 123
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 124 IHQSLAGGIIGVKGAKIKELREKTQTTIKLFQEC---CPHSTDRVVLIGGKPDRVVECI 179
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + D+R+IT+T ++
Sbjct: 321 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQ 374
>gi|147903924|ref|NP_001080563.1| heterogeneous nuclear ribonucleoprotein K [Xenopus laevis]
gi|27882469|gb|AAH44711.1| Hnrpk protein [Xenopus laevis]
Length = 399
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 322 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQIQNAQ 381
Query: 530 SLLQ 533
LLQ
Sbjct: 382 FLLQ 385
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDLMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 79 SGP---ERILSMSAD------IETIGEILKKIIPTLEEYQHFKGNDFD------CELRLL 123
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 124 IHQSLAGGIIGVKGAKIKELREKTQTTIKLFQEC---CPHSTDRVVLIGGKPDRVVECI 179
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
V+ ++ D G++IGKGG I+ ++ E+GA I + + D+R+IT+T ++
Sbjct: 321 VTTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQ 374
>gi|61369343|gb|AAX43320.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
Length = 465
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|59381084|gb|AAW84289.1| heterogeneous nuclear ribonucleoprotein K transcript variant [Homo
sapiens]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITV----------------TASEGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER++++ T EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISTDIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|375065844|ref|NP_001243477.1| heterogeneous nuclear ribonucleoprotein K [Canis lupus familiaris]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I + T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
>gi|47229298|emb|CAG04050.1| unnamed protein product [Tetraodon nigroviridis]
Length = 455
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 185 EVSFRILCSN------DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
+V F + SN +VG++IGK G ++ ++ E+GA I++ C ER+IT+
Sbjct: 34 KVCFGFVSSNFTFGLLQEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLA-- 89
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
GP + KA ++ +L E S + ++ V RLVV ++Q G L+GKGG
Sbjct: 90 -GPTTSIF---KAFSMIIEKLEEDISTSMTNSTATSKPPVTIRLVVPASQCGSLIGKGGC 145
Query: 299 IISEMRKVTGTS 310
I E+R+V+G +
Sbjct: 146 KIKEIREVSGVA 157
>gi|295660901|ref|XP_002791006.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280933|gb|EEH36499.1| KH domain RNA-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 364
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 42 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 97
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
A KA +V L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 98 --LQGAAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 154
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 155 YIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 207
>gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|209151855|gb|ACI33086.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 433
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 458 GSGSKSAIVTNT-TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIV 516
G GS S I T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+
Sbjct: 346 GRGSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 405
Query: 517 VISGTPDETQAAQSLLQ 533
I+GT D+ Q AQ LLQ
Sbjct: 406 TINGTQDQIQNAQYLLQ 422
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 19/182 (10%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+ RP + A +R + V R+L + GAVIGKGG I+AL+++ A +SV
Sbjct: 20 NGKRPAEDMEEEQAFKRSRNTDEMVELRVLLQSKNAGAVIGKGGKNIKALRTDYNASVSV 79
Query: 222 -GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNA 280
++ P ER+++V+A + ++ + L E G+DF
Sbjct: 80 PDSSGP---ERILSVSAD------IDTIGEILLKIIPTLEEYQHYNGIDFD------CEL 124
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKD 340
RL++ + G ++G G I E+R+ T T+I++ + C DRVV + G+ +V +
Sbjct: 125 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPQSTDRVVLVGGKPDRVVE 181
Query: 341 AV 342
+
Sbjct: 182 CI 183
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 350 YSDIGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRII 405
Query: 330 QISGEFSKVKDAVY 343
I+G ++++A Y
Sbjct: 406 TINGTQDQIQNAQY 419
>gi|345329393|ref|XP_001506808.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ornithorhynchus anatinus]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|380812326|gb|AFE78037.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
Length = 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 384 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 443
Query: 530 SLLQ 533
LLQ
Sbjct: 444 YLLQ 447
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 380 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 435
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 436 QDQIQNAQY 444
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 383 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 436
>gi|194376532|dbj|BAG57412.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 384 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 443
Query: 530 SLLQ 533
LLQ
Sbjct: 444 YLLQ 447
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 22/203 (10%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEA-------GAFISVGATMPECDERL--ITVTASEGPESRYSPAQKAVVLVFSRLIEG 262
+++ + +S+ A + E L I T EG + SP + + + S +E
Sbjct: 69 RTDYYLVFVVFDSILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLPLESDAVEC 127
Query: 263 TS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
+ KG DF RL++ + G ++G G I E+R+ T T+I++ +
Sbjct: 128 LNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE--- 178
Query: 320 KCISENDRVVQISGEFSKVKDAV 342
C DRVV I G+ +V + +
Sbjct: 179 CCPHSTDRVVLIGGKPDRVVECI 201
Score = 38.5 bits (88), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 380 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 435
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 436 QDQIQNAQY 444
>gi|168277712|dbj|BAG10834.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|184186906|gb|ACC69193.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
Length = 440
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 530 SLLQ 533
LLQ
Sbjct: 425 YLLQ 428
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDF 270
+++ A +SV ++ P ER+++++A + + + L E KG DF
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDF 119
Query: 271 SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQ 330
RL++ + G ++G G I E+R+ T T+I++ + C DRVV
Sbjct: 120 D------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVL 170
Query: 331 ISGEFSKVKDAV 342
I G+ +V + +
Sbjct: 171 IGGKPDRVVECI 182
Score = 38.5 bits (88), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 361 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 416
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 417 QDQIQNAQY 425
>gi|449514357|ref|XP_002192510.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Taeniopygia
guttata]
Length = 434
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 359 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 418
Query: 530 SLLQ 533
LLQ
Sbjct: 419 YLLQ 422
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 19/179 (10%)
Query: 165 RPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GA 223
RP + A +R + V RIL + GAVIGKGG I+AL+++ A +SV +
Sbjct: 19 RPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDS 78
Query: 224 TMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV 283
+ P ER+++++A + + + L E KG DF RL+
Sbjct: 79 SGP---ERILSISAD------IETIGEILKKIIPTLEEYQHYKGSDFD------CELRLL 123
Query: 284 VASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
+ + G ++G G I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 124 IHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE---CCPHSTDRVVLIGGKPDRVVECI 179
>gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQDFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|291358560|gb|ADD96765.1| heterogeneous nuclear ribonuclear protein K [Capra hircus]
Length = 441
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 367 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 426
Query: 530 SLLQ 533
LLQ
Sbjct: 427 YLLQ 430
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ + G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPQSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 363 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 418
Query: 335 FSKVKDAVYNVTGRLRDNHFSGTL 358
++++A Y + ++ +SG
Sbjct: 419 QDQIQNAQYLLQNSVK--QYSGKF 440
>gi|473912|gb|AAA21731.1| phosphoprotein [Mus cookii]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 96/211 (45%), Gaps = 33/211 (15%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ + RP + A +R + V RIL + GAVIGKGG I+AL
Sbjct: 9 TFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISV-GATMPECDERLITVTAS----------------EGPESRYSPAQKAVVL 254
+++ A +SV ++ P ER+++++A EG + SP + +
Sbjct: 69 RTDYNASVSVPDSSGP---ERILSISADIETIGEILKKIIPTLEEGLQLP-SPTATSQLP 124
Query: 255 VFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSI 311
+ S +E + KG DF RL++ G ++G G I E+R+ T T+I
Sbjct: 125 LESDAVEVLNYPHYKGSDFD------CELRLLIHQTLAGGIIGVKGAKIKELRENTQTTI 178
Query: 312 RIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++ + C DRVV I G+ +V + +
Sbjct: 179 KLFQE---CCPHSTDRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
Score = 38.5 bits (88), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 388 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 441
>gi|89272931|emb|CAJ83219.1| heterogeneous nuclear ribonucleoprotein K [Xenopus (Silurana)
tropicalis]
Length = 376
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 299 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQDQIQNAQ 358
Query: 530 SLLQ 533
LLQ
Sbjct: 359 FLLQ 362
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 19/165 (11%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTA 237
+R V RIL + GAVIGKGG I+AL+++ A +SV ++ P ER+++++A
Sbjct: 10 SRNTDMMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSISA 66
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ + + L E KG DF RL++ + G ++G G
Sbjct: 67 D------IETIGEILKKIIPTLEEYQHFKGNDFD------CELRLLIHQSLAGGIIGVKG 114
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 115 AKIKELREKTQTTIKLFQEC---CPHSTDRVVLIGGKPDRVVECI 156
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + D+R+IT+T ++
Sbjct: 298 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSDDRIITITGTQ 351
>gi|74223189|dbj|BAE40731.1| unnamed protein product [Mus musculus]
Length = 394
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 320 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 379
Query: 530 SLLQ 533
LLQ
Sbjct: 380 YLLQ 383
Score = 38.9 bits (89), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 316 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 371
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 372 QDQIQNAQY 380
>gi|226289821|gb|EEH45305.1| KH domain RNA-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 364
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 90/176 (51%), Gaps = 11/176 (6%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 42 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 97
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
A KA +V L+EG + G+ SN G RL+++ NQ+G ++G+ G I
Sbjct: 98 --LQGAAKAYAIVAKSLLEGAPQLGMGGVVSNNGTHP-VRLLISHNQMGTIIGRQGLKIK 154
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 155 YIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 207
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 60/186 (32%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGA-FISVGATMPECDERLITVTAS-EGPESR- 244
R+L S++++G +IG+ G I+ +Q +G ++ +P+ ER++ V + EG E
Sbjct: 133 VRLLISHNQMGTIIGRQGLKIKYIQDASGVRMVAQKEMLPQSTERIVEVQGTPEGIEKAV 192
Query: 245 -------------------YSPAQKAVV-----------------------------LVF 256
Y+PA +A V F
Sbjct: 193 WEIGKCLIDDWQRGTGTVLYNPAVRASVGGAPINNSLGSGGSSGGYGGRSYNRTGNGADF 252
Query: 257 SRLIEGTSEKGLDFSSNKGL---------LVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
S G S + ++N+G+ + + + S+ VGC++G+GG+ ISE+R+V+
Sbjct: 253 SDQTGGYSRRSNSDAANRGIPLVTEDGEEVQTQNISIPSDMVGCIIGRGGSKISEIRRVS 312
Query: 308 GTSIRI 313
G I I
Sbjct: 313 GARISI 318
>gi|148230152|ref|NP_001079663.1| RNA-binding protein Nova-1-like [Xenopus laevis]
gi|28302384|gb|AAH46731.1| MGC53786 protein [Xenopus laevis]
Length = 315
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 22/271 (8%)
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
A+L+V + G ++GKGG + + + +G +++ Q + ++RVV +SGE +
Sbjct: 33 FTQAKLIVPNTTAGLIIGKGGATVRNIMEESGAWVQL--SQKPAGPNLHERVVTVSGEPN 90
Query: 337 KVKDAVYNVTGRLRDNHFSGT--LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSV--A 392
+V+ A+ ++ + R++ GT LN + +T + ++P P + G V
Sbjct: 91 QVQKAICSIIHKSREDPPQGTTHLNISYI-NTQGPVANSNPTG---SPYAGGTAEPVLTP 146
Query: 393 VSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT----VTGVHLRG----SSDVGRGW 444
S PP G D L +S +L+ +S T V GVH +S G
Sbjct: 147 FSPAPPAPPAITGGDLLAISSALNTLASYGYSTGMGYNPLVGGVHPAAVNLLASYTGETG 206
Query: 445 SQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV 504
G L G++S + T+E+ VPE ++G++ G+ G L+ ++++GA++ +
Sbjct: 207 PALGLGGGGILLEKMGAES-LAGKETLEMAVPETLVGAILGKGGKTLVEYQELTGARIQI 265
Query: 505 H---EPRLGSTDRIVVISGTPDETQAAQSLL 532
E G+ R V I+G P TQAAQ L+
Sbjct: 266 SKKGEFVPGTRSRKVTITGPPGATQAAQYLI 296
>gi|355753438|gb|EHH57484.1| hypothetical protein EGM_07121 [Macaca fascicularis]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 530 SLLQ 533
LLQ
Sbjct: 449 YLLQ 452
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 23/172 (13%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-GATMPECDERLITVTASEGPESR 244
V RIL + GAVIGKGG I+AL+++ A +SV ++ P ER+++++A E+
Sbjct: 43 VELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGP---ERILSISAD--IETI 97
Query: 245 YSPAQKAVVLVFSRL------------IEGTSEKGLDFSSNKG--LLVNARLVVASNQVG 290
+K + + L +E + + L++ KG RL++ + G
Sbjct: 98 GEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFACELRLLIHQSLAG 157
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342
++G G I E+R+ T T+I++ + C DRVV I G+ +V + +
Sbjct: 158 GIIGVKGAKIKELRENTQTTIKLFQE---CCPHSADRVVLIGGKPDRVVECI 206
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G ++ ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++ I+G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLE--GSEDRIITITGT 440
Query: 335 FSKVKDAVY 343
++++A Y
Sbjct: 441 QDQIQNAQY 449
>gi|194222666|ref|XP_001498933.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Equus caballus]
Length = 620
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 447 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 503
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 504 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 554
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 555 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 586
Score = 45.4 bits (106), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 82/369 (22%), Positives = 145/369 (39%), Gaps = 84/369 (22%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 208 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 262
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 263 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 307
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 308 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEIEIMKKL 366
Query: 350 RDNHFSGTL------NTARTRSTSSVLTETSPYSRLKDPAS-FGVHSSVAVSHDFSQPPL 402
R+ + L N + S++ ++ S L PA GV + PP
Sbjct: 367 REAFENDMLAVNQQANLIPGLNLSALGIFSTGLSMLPPPAGPRGVPPA---------PPY 417
Query: 403 TQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSK 462
H G SL P +S HH
Sbjct: 418 HPFATHSGYFSSLYPPHQ-----------------------FSPFPHHH----------- 443
Query: 463 SAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS--TDRIVVISG 520
+ V + +P +G++ G+ G+++ +L + +GA + + P G ++R+V+I+G
Sbjct: 444 -SYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI-APAEGPDVSERMVIITG 501
Query: 521 TPDETQAAQ 529
P+ AQ
Sbjct: 502 PPEAQFKAQ 510
>gi|357603478|gb|EHJ63796.1| Heterogeneous nuclear ribonucleoprotein K [Danaus plexippus]
Length = 264
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
TT ++ +P+++ G++ G+ GS + ++R SGA + + EP G+ DRI+ I+GTP Q A
Sbjct: 185 TTTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGAADRIITITGTPPRIQKA 244
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 245 QYLLQ 249
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
QQE + ++ D GA+IGK G+ IR +++E+GA I + +P +R+IT+T +
Sbjct: 182 QQETTTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGAADRIITITGT 237
>gi|346324545|gb|EGX94142.1| KH domain RNA-binding protein [Cordyceps militaris CM01]
Length = 420
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 9/180 (5%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q +++ R + S+ + G +IGKGG + L+ E G V + +R++T+T
Sbjct: 39 DEEYAQAQLTLRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGVHDRVLTITG 98
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
SR A +V L+EG G+ +L+++ NQ+G ++G+ G
Sbjct: 99 GCDAISR------AYAIVARALLEGAPAMGMGGVVQGNGTHPIKLLISHNQMGTVIGRQG 152
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ V+G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 153 LKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPEGIQRALWEICKCLVDDWQRGT 209
>gi|74215286|dbj|BAE41861.1| unnamed protein product [Mus musculus]
Length = 530
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 357 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 412
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 413 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 463
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 464 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 496
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 118 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 172
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
+T+ A+ PE +A ++ + + E L V +++ + VG L
Sbjct: 173 VTIHAT--PEG----TSEACRMILEIMQKEADETKLAEE------VPLKILAHNGFVGRL 220
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351
+GK G + ++ TGT I I S Q L I +R + + G +A + +LR+
Sbjct: 221 IGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVRGTIEACANAEIEIMKKLRE 278
>gi|431838851|gb|ELK00780.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Pteropus
alecto]
Length = 820
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 647 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 703
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 704 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 754
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 755 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 786
>gi|400603119|gb|EJP70717.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 464
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/374 (23%), Positives = 150/374 (40%), Gaps = 54/374 (14%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
+ R + S+ + +IGKGG + ++ + A +V ER++TV+
Sbjct: 107 IHIRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSG-------- 158
Query: 246 SPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
AV F +I + + L + S+ RL++ +G ++GKGG I E++
Sbjct: 159 --IVDAVAKAFGLIIRTLNNEALTETSTASSKTYPLRLLIPHILIGSIIGKGGARIREIQ 216
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L SE VV G V A Y V L + F G +A
Sbjct: 217 EASGARLNA-SDSCLPMSSERSLVVM--GVADAVHIATYYVGSTLLEQLNERFGGPAASA 273
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPAS--------FGVHSSVAVSHDFSQPPLTQGMD 407
TRS + + + PYS PAS +G HS Q
Sbjct: 274 YATRSGAPAGSIPGGMQVVPYS--PQPASGQYGRSENYGRHSERRPPMPPPAAYPAQYPP 331
Query: 408 HLGLSHSLDCPSSP----KLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
H G ++ PS P H++ Q + H G G
Sbjct: 332 HAGAQAAV--PSMPLHYGAQAGGYGAAAPHVQ----------QHMPPHTGAQPHGGPQAQ 379
Query: 464 AIVTNT-----TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
+ T +I +P +++G++ G+ G + +RQ+SG+ + ++EP+ S +R+V +
Sbjct: 380 NMHAGMPGGPMTQQIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNSNERLVTV 439
Query: 519 SGTPDETQAAQSLL 532
+GT + + A LL
Sbjct: 440 TGTEECNRMALYLL 453
>gi|346473549|gb|AEO36619.1| hypothetical protein [Amblyomma maculatum]
Length = 320
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 19/165 (11%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPEC--DERLITVTASEGP 241
+ V R L + GA+IGKGGT I +L+ E A ISV P+C ER++++ A
Sbjct: 37 RAVDVRFLLQSRNAGAIIGKGGTNINSLRKEFKASISV----PDCPGPERILSIVAD--- 89
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
++ + +L + G N G RL++ + GC++G+ G I
Sbjct: 90 ---LDTLGDILLNIIPKLDDFAQHTG----QNGGSESEMRLLMHQSHAGCIIGRAGCRIK 142
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346
E+R+ TG +I++ C +R+V+++G + V D + +
Sbjct: 143 ELRESTGANIKVHGSC---CPGSTERIVKVTGSPAVVVDCIKQIC 184
>gi|326925691|ref|XP_003209044.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Meleagris gallopavo]
Length = 502
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 35/215 (16%)
Query: 129 AVSQE--ILPDLHVDILSQRNSVLTTAPSS----SISYVSAVRPLSLESDRVATLDARTQ 182
AV+Q+ ++P L++ L ++ L+ PSS + + P +L V L TQ
Sbjct: 280 AVNQQANLIPGLNLSALGIFSTGLSMLPSSVGARGAAAAAPYHPFALPEQEVVNLFIPTQ 339
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 340 -------------AVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGP--P 384
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S G ++GKGG ++
Sbjct: 385 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVN 435
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 436 ELQNLTSAEVIVPRDQ---TPDENEEVIVKIIGHF 467
>gi|327307466|ref|XP_003238424.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326458680|gb|EGD84133.1| KH domain RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 367
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GPL 101
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G I
Sbjct: 102 QGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKY 158
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 159 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 210
>gi|325087770|gb|EGC41080.1| KH domain RNA-binding protein [Ajellomyces capsulatus H88]
Length = 321
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 16/227 (7%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT
Sbjct: 36 DEEYAQSTLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT- 94
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGL-DFSSNKGLLVNARLVVASNQVGCLLGKG 296
GP KA +V L+EG + G+ +SN G RL+++ NQ+G ++G+
Sbjct: 95 --GP---LQGTAKAYAIVAKGLLEGAPQLGMGGVASNNGTHP-VRLLISHNQMGTIIGRQ 148
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356
G I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ G
Sbjct: 149 GLKIKYIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRG 205
Query: 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSH-----DFS 398
T + + + P + L AS G + + + DFS
Sbjct: 206 TGTVLYNPAVRASVGGGPPNNSLGSGASTGGYGGRSYNRTGNGADFS 252
>gi|449274935|gb|EMC83962.1| Poly(rC)-binding protein 4 [Columba livia]
Length = 324
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L ++G++IGK G ++ ++ ++ A I++ C ER+ T+T S R
Sbjct: 23 LTLRMLMHGKEIGSIIGKKGETVKRIREQSSARITISEG--SCPERITTITGSTDAVFR- 79
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
AV ++ +L E G D ++ V RLV+ ++Q G L+GK G I E+R+
Sbjct: 80 -----AVSMIAFKLEEDLG-AGSDGAAVGRSPVTLRLVIPASQCGSLIGKAGAKIREIRE 133
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISG 333
TG +++ D L + +R V +SG
Sbjct: 134 STGAQVQVAGDLLP---NSTERAVTVSG 158
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N++ E +VP ++IG + G +GS + +RQ+SGA + + GS++R V I+G+P
Sbjct: 257 NSSQEFLVPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTITGSPVSITV 316
Query: 528 AQSLLQAF 535
AQ L+ A+
Sbjct: 317 AQYLITAW 324
Score = 43.9 bits (102), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 456 ELGSGSKSAIV--TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GST 512
+LG+GS A V + T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST
Sbjct: 91 DLGAGSDGAAVGRSPVTLRLVIPASQCGSLIGKAGAKIREIRESTGAQVQVAGDLLPNST 150
Query: 513 DRIVVISGTPDETQAAQSLLQAFILTGPS 541
+R V +SG PD + A IL P+
Sbjct: 151 ERAVTVSGVPDTIIHCVRQICAVILEVPT 179
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 155 SSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSE 214
+ + SY PL LD +Q F L ND +G +IG+ G+ I ++
Sbjct: 229 TDAYSYWRPTTPLLTSLSLPPGLDTSSQNSSQEF--LVPNDLIGCIIGRHGSKISEIRQM 286
Query: 215 AGAFISVGATMPECDERLITVTAS 238
+GA I +G ER +T+T S
Sbjct: 287 SGAHIKIGNQTEGSSERHVTITGS 310
>gi|149018652|gb|EDL77293.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018654|gb|EDL77295.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018655|gb|EDL77296.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018656|gb|EDL77297.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018658|gb|EDL77299.1| rCG25644, isoform CRA_a [Rattus norvegicus]
gi|149018659|gb|EDL77300.1| rCG25644, isoform CRA_a [Rattus norvegicus]
Length = 183
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 15/158 (9%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
++ R+L +VG++IGK G ++ ++ ++ A I++ + C ER+ T+T S
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITI--SEGSCPERITTITGS------T 69
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
+ AV ++ +L E + S V RLV+ ++Q G L+GK GT I E+R+
Sbjct: 70 AAVFHAVSMIAFKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVY 343
TG +++ D L + +R V +SG V DA+
Sbjct: 130 TTGAQVQVAGDLLP---NSTERAVTVSG----VPDAII 160
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +++P + GS+ G+ G+ + +R+ +GA+V V L ST+R V +SG PD
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 529 QSLLQAFILTGP 540
+ A IL P
Sbjct: 163 VRQICAVILEEP 174
>gi|22218811|pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Query: 530 SLLQ 533
LLQ
Sbjct: 75 YLLQ 78
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
++ ++ D G++IGKGG I+ ++ E+GA I + + ++R+IT+T ++
Sbjct: 14 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQ 67
>gi|355559801|gb|EHH16529.1| hypothetical protein EGK_11818, partial [Macaca mulatta]
Length = 542
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 369 EQEV-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 425
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E EK F+ + + + A + V S+ G ++GKGG ++
Sbjct: 426 EAQF----KAQGRIFGKLKE---EKF--FTPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 476
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 508
>gi|449509689|ref|XP_002192903.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
[Taeniopygia guttata]
Length = 531
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 357 EQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERMVIITGP--P 413
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S G ++GKGG ++
Sbjct: 414 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVN 464
Query: 302 EMRKVTGTSIRIISDQLLKCISENDR-VVQISGEF 335
E++ +T + + DQ EN+ VV+I G F
Sbjct: 465 ELQNLTSAEVIVPRDQ---TPDENEEVVVKIIGHF 496
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 144/353 (40%), Gaps = 50/353 (14%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGP 241
+Q + R+L VGA+IGK G I+ L + + + + R A+E P
Sbjct: 113 KQLDFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDI--------HRKENAGAAEKP 164
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
+ ++ + R+I +K D + V +++ ++ VG L+GK G +
Sbjct: 165 ITIHATPEGCSEAC--RMILDIMQKEAD-ETKSAEEVPLKILAHNSLVGRLIGKEGRNLK 221
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTA 361
++ + TGT I I Q L I +R + + G +A + +LR+ + + +
Sbjct: 222 KIEQDTGTKITISPLQDL-TIYNPERTITVKGSTEACSNAEVEIMKKLREAYENDVVAVN 280
Query: 362 RTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSP 421
+ + L + ++ G+ S+ GLS PS+P
Sbjct: 281 QQANLIPGL----------NLSALGIFST-------------------GLSM---LPSTP 308
Query: 422 KLWTAQTVTGVHLRGSSDVGR--GWSQGLSHHKGGLELGS-GSKSAIVTNTTVEIIVPEN 478
A T H R G S LS G G+ + + V + +P
Sbjct: 309 GARGAAAATPYHPFAQQSGRRRTGSSAYLSSLYGAPPAGAFPHQHPLPEQEVVNLFIPTQ 368
Query: 479 VIGSVYGENGSNLLRLRQISGAKVIVHEPRLG--STDRIVVISGTPDETQAAQ 529
+G++ G+ G ++ +L + +GA + + P G +++R+V+I+G P+ AQ
Sbjct: 369 AVGAIIGKKGQHIKQLARFAGASIKI-APAEGPDASERMVIITGPPEAQFKAQ 420
>gi|361066699|gb|AEW07661.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 247 PAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKV 306
PAQ A++ V S + + +S K D ++K NARL+VA++Q+G L+GKGG I +MR
Sbjct: 18 PAQDALLRVHSVIAQESSAKDKDSDADKKGQQNARLLVANSQIGSLIGKGGNNIQKMRTE 77
Query: 307 TGTSIRII-SDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
+G I+I D+L C D +V ISG+ + VK A+Y V+ L
Sbjct: 78 SGAQIQIPRKDELPGCAFSFDELVVISGDATAVKKALYAVSAFL 121
>gi|212275119|ref|NP_001130556.1| uncharacterized protein LOC100191655 [Zea mays]
gi|194689470|gb|ACF78819.1| unknown [Zea mays]
gi|223943199|gb|ACN25683.1| unknown [Zea mays]
gi|413936736|gb|AFW71287.1| hypothetical protein ZEAMMB73_610626 [Zea mays]
gi|413936737|gb|AFW71288.1| hypothetical protein ZEAMMB73_610626 [Zea mays]
Length = 690
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 162 SAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV 221
+++ PLS +S A + Q S +I N +VG +IGK G IR +Q ++GA I V
Sbjct: 120 ASIPPLSSQSS--APQYSYGGHQGTSKKIEIPNGRVGVIIGKAGETIRYIQLQSGAKIQV 177
Query: 222 GATMPECDERLIT--VTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGL 276
E + +T V S PE + S A++ + V + G+S G +++ +
Sbjct: 178 TRDH-EAEPGALTRQVELSGNPE-QISKAEQLIKEVIAEADAGSSGAVSGGRKYNAPQPG 235
Query: 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336
++ +A+N+VG ++GKGG I M+ +G I++I L + +R V I G
Sbjct: 236 AETFQMKIANNKVGLIIGKGGETIKSMQAKSGARIQVIPLHLPAGDTSTERTVHIDGTQE 295
Query: 337 KVKDA 341
+++ A
Sbjct: 296 QIEHA 300
>gi|109042331|ref|XP_001095005.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Macaca mulatta]
gi|402860701|ref|XP_003894761.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Papio anubis]
Length = 556
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEV-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 331 ----VEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEV 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
>gi|358348269|ref|XP_003638170.1| RNA-binding protein Nova-1, partial [Medicago truncatula]
gi|358348273|ref|XP_003638172.1| RNA-binding protein Nova-1, partial [Medicago truncatula]
gi|355504105|gb|AES85308.1| RNA-binding protein Nova-1, partial [Medicago truncatula]
gi|355504107|gb|AES85310.1| RNA-binding protein Nova-1, partial [Medicago truncatula]
Length = 177
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 15/149 (10%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRY 245
R L SN G+VIGKGG+ I QS++GA I + P +R+I V+ +
Sbjct: 39 RFLVSNSAAGSVIGKGGSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGA------I 92
Query: 246 SPAQKAVVLVFSRLI-EGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
+ +AV L+ S+L+ E SE D RL+V + G ++GKGG I
Sbjct: 93 NEVLRAVELILSKLLSELHSEDDNDVEPK----TKVRLIVPNGSCGGIIGKGGATIRSFI 148
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISG 333
+ + I+ IS Q +NDR+V ++G
Sbjct: 149 EESQAGIK-ISPQDNSYYGQNDRIVTVTG 176
>gi|307185706|gb|EFN71622.1| Heterogeneous nuclear ribonucleoprotein K [Camponotus floridanus]
Length = 139
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 44/65 (67%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T+ ++ +P+++ G++ G+ G+ + ++R SGA + + EP GS DRI+ I+G P + Q A
Sbjct: 73 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 132
Query: 529 QSLLQ 533
Q LLQ
Sbjct: 133 QYLLQ 137
Score = 44.7 bits (104), Expect = 0.14, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
+ S ++ D GA+IGKGG IR ++S++GA I++ +P ++R+IT+T
Sbjct: 72 KTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITG 124
>gi|407917412|gb|EKG10721.1| K-like protein [Macrophomina phaseolina MS6]
Length = 488
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 154/374 (41%), Gaps = 61/374 (16%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 135 RAIISSAEAATVIGKGGENVTQIRRMSGAKCTVSDYSRGAVERILTVSG----------L 184
Query: 249 QKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT 307
AV F +I + + L+ S+ + RL++ +G ++GK G I E+++ +
Sbjct: 185 VDAVAKAFGLIIRTLNNEDLNSPSTPQSKTYPLRLLIPHILIGSIIGKSGVRIREIQEAS 244
Query: 308 GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-T 363
G + SD L +E VV G V A Y V L + F G +A T
Sbjct: 245 GARLNA-SDSCLPLSTERSLVVL--GVADAVHIATYYVGSTLVEQLTERFGGPAASAYAT 301
Query: 364 RSTSSVLT-----ETSPY------SRLKDPASF---GVHSSVAVSHDFSQP--------- 400
RS + PY + P +F G + + + P
Sbjct: 302 RSGGPAGVVPGGMQVVPYVPQPAGGQWGPPDTFHRKGPQAQRTPAAGYGAPMHGQYPQQP 361
Query: 401 --PLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELG 458
PL G +++ P P+ + A H+ S G+ +Q + G +
Sbjct: 362 QAPLHYGAGSPRHAYTGAGPHQPQQYGAP-----HVAQPSHAGQ-PAQPMQGMMPGQPM- 414
Query: 459 SGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
T +I +P +++G++ G+ G+ + +RQ+SG+ + ++EP+ S +R+V I
Sbjct: 415 -----------TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTI 463
Query: 519 SGTPDETQAAQSLL 532
+GT + Q A +L
Sbjct: 464 TGTQECNQMALYML 477
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 7/135 (5%)
Query: 126 LFGAVSQEILPDLHVDILSQRNSVLTTAPSSSISYVSA-VRPLSLESDRVATLDARTQQQ 184
+ G Q+ LH S R++ P Y + V S + Q
Sbjct: 353 MHGQYPQQPQAPLHYGAGSPRHAYTGAGPHQPQQYGAPHVAQPSHAGQPAQPMQGMMPGQ 412
Query: 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESR 244
++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 413 PMTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQ--ECN 470
Query: 245 YSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 471 ----QMALYMLYSRL 481
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R+++G+ I+I Q + N+R+V I+G
Sbjct: 411 GQPMTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQ----DNSNERLVTITGT 466
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 467 QECNQMALYMLYSRL 481
>gi|357602329|gb|EHJ63352.1| hypothetical protein KGM_14186 [Danaus plexippus]
Length = 546
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 26/183 (14%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTAS-EGPES 243
F++L + GA+IGKGG I LQ + GA + + + P ER +T S EG
Sbjct: 68 FKVLVPSMVAGAIIGKGGETIAQLQKDTGARVKMSKSHDFYPGTTERACLITGSVEG--- 124
Query: 244 RYSPAQKAVVLVFSRLIEGTSEK---------GLDFSSNKGLLVNARLVVASNQVGCLLG 294
+++V ++E EK G+D + +++V ++ G ++G
Sbjct: 125 --------IMVVLDFIMEKIKEKPELVKPFPEGVDAKMPQDRDKQVKILVPNSTAGMIIG 176
Query: 295 KGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHF 354
KGG I ++++ +G+ ++I Q K +S +R + + GE K A + ++ D+
Sbjct: 177 KGGNYIKQIKEQSGSYVQI--SQKAKELSLQERCITVVGEKENNKKACLMILQKVVDDPQ 234
Query: 355 SGT 357
SG+
Sbjct: 235 SGS 237
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 177 LDART-QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPE--CDERLI 233
+DA+ Q ++ +IL N G +IGKGG I+ ++ ++G+++ + E ER I
Sbjct: 150 VDAKMPQDRDKQVKILVPNSTAGMIIGKGGNYIKQIKEQSGSYVQISQKAKELSLQERCI 209
Query: 234 TVTASEGPESRYSPAQKAVVLVFSRLIE 261
TV + E+ +KA +++ ++++
Sbjct: 210 TVVGEK--ENN----KKACLMILQKVVD 231
Score = 38.9 bits (89), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 475 VPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAAQSL 531
+PE ++G++ G G +L+ ++Q+SGA + + + G+ +RIV ISGT A L
Sbjct: 464 IPEVIVGAILGPGGRSLVEIQQMSGANIQISKKGTFAPGTRNRIVTISGTATAISNAHYL 523
Query: 532 LQAFI 536
++ I
Sbjct: 524 IEQKI 528
>gi|395839829|ref|XP_003792778.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Otolemur garnettii]
Length = 575
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTA 237
A+ +QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 398 AQYPEQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 456
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG
Sbjct: 457 P--PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGG 505
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
++E++ +T + + DQ EN+ V V+I G F
Sbjct: 506 KTVNELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 541
>gi|345495410|ref|XP_001602171.2| PREDICTED: hypothetical protein LOC100118119 [Nasonia vitripennis]
Length = 533
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 113/252 (44%), Gaps = 33/252 (13%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ---QQEVSFRILCSNDKVGAVIGK 203
+S + T PS I+ S RPL + + AT + ++L GA+IGK
Sbjct: 4 DSGMETCPSPEIAD-SRKRPLDCDVENGATKRSHYGTGGDGTYHLKVLVPGVAAGAIIGK 62
Query: 204 GGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I LQ + GA + + + P ER+ +T S A++ V ++
Sbjct: 63 GGETIAQLQKDTGARVKMSKSHDFYPGTTERVCLITGS----------VDAIMAVMDFIM 112
Query: 261 EGTSEK-------GLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
E EK +DF S K +++V ++ G ++GK G I ++++ +G+
Sbjct: 113 EKIREKPDLTTKTTVDFDSGKATAERDKQVKILVPNSTAGMIIGKAGNYIKQIKEESGSY 172
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT-LNTARTRSTSSV 369
++I Q K +S +R + + GE ++A+ + ++ D+ SGT LN + + V
Sbjct: 173 VQI--SQKAKDVSLQERCITVIGEKENNRNALLMILAKVADDPQSGTCLNVSYADVSGPV 230
Query: 370 LTET---SPYSR 378
SPY++
Sbjct: 231 ANYNPTGSPYAQ 242
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAA 528
+I + E ++G++ G G NL+ ++ +SGA + + + + G+ +RIV I+G PD + A
Sbjct: 448 DIEIAEVIVGAILGPGGRNLIEIQHLSGANIQISKKGIFAPGTRNRIVTITGFPDAIRTA 507
Query: 529 QSLLQ 533
L++
Sbjct: 508 HYLIE 512
>gi|242785360|ref|XP_002480578.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218720725|gb|EED20144.1| KH domain RNA-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 367
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/360 (21%), Positives = 149/360 (41%), Gaps = 54/360 (15%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
D Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT
Sbjct: 40 DEEYAQAILTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVTG 99
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
+ +A +V L+EG + G+ RL+++ NQ+G ++G+ G
Sbjct: 100 A------LQGCARAYSIVAKGLLEGAPQVGMGGVVQNNGTHPIRLLISHNQMGTIIGRQG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+
Sbjct: 154 LKIKHIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDW---- 206
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHD----FSQPPLTQGMDHLGLSH 413
R T +VL +P R+ + S ++H+ + + G
Sbjct: 207 -----QRGTGTVL--YNPAVRVS------IGGSGQLNHNGDRTGGSYGGGRSYNRTGNGA 253
Query: 414 SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEI 473
PS G + RGS D G L L + + T I
Sbjct: 254 DFSEPSG----------GYNRRGSGDNG----------NRNLPLVTDDGEEVQTQN---I 290
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAAQSLL 532
+P +++G + G GS + +R+ SGA++ I P + +R+ I G+ + A LL
Sbjct: 291 SIPADMVGCIIGRGGSKISEIRRSSGARISIAKAPHDETGERMFTIMGSAQANEKALYLL 350
>gi|326469510|gb|EGD93519.1| KH domain RNA binding protein [Trichophyton tonsurans CBS 112818]
gi|326478964|gb|EGE02974.1| KH domain RNA binding protein [Trichophyton equinum CBS 127.97]
Length = 483
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 43/369 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 131 VHIRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 182
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 183 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIREIQ 240
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 241 EASGARLNA-SDSCLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 297
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQ--PPLTQGMDHLGLSH 413
TRS + PY +G S+ ++ + P G+ ++
Sbjct: 298 YATRSGGPAGVVPGGMQVVPYVPQPAGGQYGHPDSLRRNNPQANRAAPGGYGVPYMQQPA 357
Query: 414 --------SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
SL +SP+ T T G H + H G + A
Sbjct: 358 PHPHAPQPSLHYGASPR--TGYTGAGPHQPAP------YGAPQPPHGGHVPPNGPPMGAA 409
Query: 466 VTNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT +
Sbjct: 410 VPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQE 469
Query: 524 ETQAAQSLL 532
Q A +L
Sbjct: 470 CNQMALYML 478
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT 236
+ A Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T
Sbjct: 406 MGAAVPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTIT 465
Query: 237 ASEGPESRYSPAQKAVVLVFSRL 259
++ E Q A+ +++SRL
Sbjct: 466 GTQ--ECN----QMALYMLYSRL 482
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 412 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 467
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 468 QECNQMALYMLYSRL 482
>gi|195119576|ref|XP_002004307.1| GI19683 [Drosophila mojavensis]
gi|193909375|gb|EDW08242.1| GI19683 [Drosophila mojavensis]
Length = 509
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 36/186 (19%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R ++ E + RIL + GAVIGKGG I+ ++++ A +S V S+
Sbjct: 16 RNRRNEETVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVS--------------VDDSQ 61
Query: 240 GPES--RYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
GPE + S + + + + +++ E+ ++ + RL++ + GC++GKGG
Sbjct: 62 GPERTIQISTDIDSTLEIITEMLKYFEERDEEY--------DVRLLIHQSLAGCVIGKGG 113
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISE-----NDRVVQISGEFSKVKDAVYNVTGRLRDN 352
I E+R G + LK S DRVVQ G+ S+V +AV V RD
Sbjct: 114 QKIKEIRDRIGC-------RFLKVFSNVAPQSTDRVVQTVGKQSQVIEAVREVITLTRDT 166
Query: 353 HFSGTL 358
G +
Sbjct: 167 PIKGPI 172
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQA 527
N + ++ +P+++ G++ G+ G + R+R S A + + EP GS DRI+ ISGTP + Q
Sbjct: 433 NNSTQVTIPKDLAGAIIGKGGGRIRRIRNESSAYITIDEPLPGSNDRIITISGTPKQIQM 492
Query: 528 AQSLLQ 533
AQ LLQ
Sbjct: 493 AQYLLQ 498
>gi|402860703|ref|XP_003894762.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Papio anubis]
Length = 536
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 363 EQEV-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 419
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 420 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 470
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 471 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 502
>gi|395839825|ref|XP_003792776.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Otolemur garnettii]
Length = 597
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 424 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 480
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 481 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 531
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 532 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 563
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 185 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 239
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 240 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 284
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 285 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEIEIMKKL 343
Query: 350 RD 351
R+
Sbjct: 344 RE 345
>gi|356514579|ref|XP_003525983.1| PREDICTED: uncharacterized protein LOC100797476 [Glycine max]
Length = 554
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 16/184 (8%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I + + P R + + +
Sbjct: 82 QGSSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQITRDIDADPNSSTRTVELMGT-- 139
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV--VASNQVGCLLGKGGT 298
PE+ S A+K + V + G S G+ G + V + +N+VG ++GKGG
Sbjct: 140 PEAISS-AEKLINEVLAEAESGGS--GIVTRRFTGQAGSDEFVMKIPNNKVGLIIGKGGE 196
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA---VYNV---TGRLRDN 352
I M+ TG I++I L + +R ++I G +++ A VY V R+R+
Sbjct: 197 TIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLVYQVISGENRVRNP 256
Query: 353 HFSG 356
SG
Sbjct: 257 AMSG 260
>gi|302509454|ref|XP_003016687.1| hypothetical protein ARB_04979 [Arthroderma benhamiae CBS 112371]
gi|327303250|ref|XP_003236317.1| KH domain RNA binding protein [Trichophyton rubrum CBS 118892]
gi|291180257|gb|EFE36042.1| hypothetical protein ARB_04979 [Arthroderma benhamiae CBS 112371]
gi|326461659|gb|EGD87112.1| KH domain RNA binding protein [Trichophyton rubrum CBS 118892]
Length = 483
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 154/369 (41%), Gaps = 43/369 (11%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V R + S+ + VIGKGG + ++ +GA +V ER++TV+
Sbjct: 131 VHIRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSG-------- 182
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
Q AV F +I + + L+ S+ + RL++ +G ++GK G I E++
Sbjct: 183 --MQDAVAKAFGLIIRTLNNEPLEAPSTAQSKTYPLRLLIPHILIGSIIGKSGVRIREIQ 240
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTA 361
+ +G + SD L +E R + I G V A Y V L + F G +A
Sbjct: 241 EASGARLNA-SDSCLPLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASA 297
Query: 362 R-TRSTSSVLT-----ETSPYSRLKDPASFGVHSSVAVSHDFSQ--PPLTQGMDHLGLSH 413
TRS + PY +G S+ ++ + P G+ ++
Sbjct: 298 YATRSGGPAGVVPGGMQVVPYVPQPAGGQYGHPDSLRRNNPQANRAAPGGYGVPYMQQPA 357
Query: 414 --------SLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
SL +SP+ T T G H + H G + A
Sbjct: 358 PHPHAPQPSLHYGASPR--TGYTGAGPHQPAP------YGAPQPPHGGHVPPNGPPMGAA 409
Query: 466 VTNT--TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPD 523
V T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT +
Sbjct: 410 VPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQE 469
Query: 524 ETQAAQSLL 532
Q A +L
Sbjct: 470 CNQMALYML 478
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 177 LDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVT 236
+ A Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T
Sbjct: 406 MGAAVPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTIT 465
Query: 237 ASEGPESRYSPAQKAVVLVFSRL 259
++ E Q A+ +++SRL
Sbjct: 466 GTQ--ECN----QMALYMLYSRL 482
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 412 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQ----DNSNERLVTITGT 467
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 468 QECNQMALYMLYSRL 482
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 27/161 (16%)
Query: 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYS 246
+ RIL + G +IGKGGT IR L++E A ++V T +ER++T+TA
Sbjct: 54 TLRILIQSKDAGGIIGKGGTNIRRLRTEYNAVVNVPDT--NSNERVLTITA--------- 102
Query: 247 PAQKAVVLVFSRLIE-GTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
P Q A+ ++ + + G + G + +++V +QVG ++G+ G I E+R+
Sbjct: 103 PRQSALDILAEVVPKIGEVQYGHEI----------QMLVQRSQVGSIIGRAGYKIKEIRE 152
Query: 306 VTGTSIRIISDQLLKCI-SENDRVVQISGEFSKVKDAVYNV 345
+G ++++ +D C+ + +RVV +SG + V NV
Sbjct: 153 GSGANVKVFAD----CLPNSTERVVTMSGSAETIVKCVENV 189
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 444 WSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVI 503
W+QG + SG +A T+ ++ +P+++ GS+ G+ G + +R A +
Sbjct: 327 WNQGGAS--------SGGNTAGGDQTSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIK 378
Query: 504 VHEPRLGSTDRIVVISGTPDETQAAQSLLQ 533
+ +P GS DRI+ I+G ++ AQ LLQ
Sbjct: 379 IDDPLPGSNDRIITITGNQEQINHAQYLLQ 408
>gi|344282127|ref|XP_003412826.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Loxodonta africana]
Length = 599
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|345309017|ref|XP_001516066.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 679
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 34/226 (15%)
Query: 129 AVSQE--ILPDLHVDILSQRNSVLTTAPSSS----ISYVSAVRPLSLESDRVATLDARTQ 182
AV+Q+ ++P L++ L ++ L+ PS++ + S P + S ++ L ++
Sbjct: 433 AVNQQANLIPGLNLSALGIFSTGLSMLPSTAGPHGATAASPYNPFASHSPYLSGLYGASR 492
Query: 183 -----------QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDE 230
+QEV + VGA+IGK G I+ L AGA I + A P+ E
Sbjct: 493 VGAFPHQHSVPEQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASE 551
Query: 231 RLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVG 290
R++ +T PE+++ KA +F +L E F+ + + + A + V S+ G
Sbjct: 552 RMVIITGP--PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSSAAG 600
Query: 291 CLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
++GKGG ++E++ +T + + DQ EN+ V V+I G F
Sbjct: 601 RVIGKGGKTVNELQNLTSAEVIVPRDQTP---DENEEVIVKIIGHF 643
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 153/365 (41%), Gaps = 78/365 (21%)
Query: 181 TQQQEVSF--RILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
TQ + + F RIL VGA+IGK G I+ L + + + + GA E+
Sbjct: 265 TQPKPLDFPLRILVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKENAGAA-----EKP 319
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
IT+ A+ PE RLI +K D + + +++ ++ VG L
Sbjct: 320 ITIHAT--PEGSSEAC---------RLILEIMQKEAD-ETKSAEEIPLKILAHNSLVGRL 367
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+GK G + ++ + TGT I I Q L I +R + + G +A + +LR+
Sbjct: 368 IGKEGRNLKKIEQDTGTKITISPLQDL-TIYNPERTITVKGSIEACSNAEVEIMKKLREA 426
Query: 353 HFSGTL------NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
+ + + N + S++ ++ S L P++ G H + A S
Sbjct: 427 YENDVVAVNQQANLIPGLNLSALGIFSTGLSML--PSTAGPHGATAAS------------ 472
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
P +P + ++G++ G+S VG H + ++
Sbjct: 473 -----------PYNPFASHSPYLSGLY--GASRVG-----AFPH-----------QHSVP 503
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG--STDRIVVISGTPDE 524
V + +P +G++ G+ G ++ +L + +GA + + P G +++R+V+I+G P+
Sbjct: 504 EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKI-APAEGPDASERMVIITGPPEA 562
Query: 525 TQAAQ 529
AQ
Sbjct: 563 QFKAQ 567
>gi|109042328|ref|XP_001095336.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 5 [Macaca mulatta]
gi|402860699|ref|XP_003894760.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Papio anubis]
Length = 599
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEV-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|365761950|gb|EHN03570.1| Pbp2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 416
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/374 (22%), Positives = 155/374 (41%), Gaps = 73/374 (19%)
Query: 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRY 245
V R+LC ++G G I ++SE A I+V + ER+I V +
Sbjct: 70 VHLRMLCLVKHASLIVGHKGATISRIKSETSARINVSNNIRGVPERIIYVRGT------C 123
Query: 246 SPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRK 305
KA ++ L+E + S + + V+ L++ + +GC++GK G+ + E+
Sbjct: 124 DDVAKAYGMIVRALLEEHENE----SEEEDIEVSINLLIPHHLMGCIIGKRGSRLREIED 179
Query: 306 VTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRS 365
++ + +QLL NDR++ ISG V DA++ T + + + + + +
Sbjct: 180 LSAAKLFASPNQLLL---SNDRILTISG----VPDAIHIATFYVGQTLLNFQIESPQKKL 232
Query: 366 TSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDH----------------L 409
S+ + P F +SV + H S L Q +H
Sbjct: 233 KRSIFYQ---------PTQF---NSVLLDHSQSNAVLHQ-RNHQYHPNDKLLSCRPNRKF 279
Query: 410 GLSHSLDCPSSPKLWTAQ-----------TVTGVHLRGSSDVGRGWSQGLSHHKGGLELG 458
+S +L + P+ TA + V + + + +G S LS
Sbjct: 280 SVSSTLLSMAPPQYTTASVANATAFHPNFVIPNVRILDAPVIDQGPSNHLS--------- 330
Query: 459 SGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVI 518
+ EI + EN +G+V G++G ++ +++ +G +IV + GS++R + I
Sbjct: 331 -------MNLFQQEIFIDENFVGNVIGKDGKHINSVKESTGCSIIVQDSAEGSSERRLSI 383
Query: 519 SGTPDETQAAQSLL 532
GT +QAA L+
Sbjct: 384 RGTFMASQAAIMLI 397
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 29/178 (16%)
Query: 167 LSLESDRVATLDA-------RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI 219
+S + ++VA+ A R + +++ +G++IGK G+ I+ + E+ A I
Sbjct: 1 MSADEEQVASRPAESRPAKGRGHSSNLVLKMIMQGKDIGSIIGKEGSTIKQFRQESNAHI 60
Query: 220 SV--GATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGL--DFSSNKG 275
++ G+T ER+++VT + + AVV F+ LI E L + SN
Sbjct: 61 NISDGST----PERIVSVTGT----------KDAVVTAFA-LIGQKLEDELKSNSKSNTT 105
Query: 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG 333
V RL+V +Q G ++GKGG I E+R+V+G S+ +++ + L SE R V +SG
Sbjct: 106 PPVTLRLIVPGSQCGSIIGKGGAKIKEIREVSGASV-VVAGEFLPGSSE--RAVTLSG 160
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 456 ELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDR 514
EL S SKS T+ +IVP + GS+ G+ G+ + +R++SGA V+V L GS++R
Sbjct: 95 ELKSNSKSNTTPPVTLRLIVPGSQCGSIIGKGGAKIKEIREVSGASVVVAGEFLPGSSER 154
Query: 515 IVVISGTPDETQAAQSLLQAFILTGP 540
V +SGTP+ + LL ++ P
Sbjct: 155 AVTLSGTPEALETCIDLLCGVMIEFP 180
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 466 VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDET 525
+T+ T+ I+ + +GS+ G+ GS + +RQ+SGA + + + G R V+I+GT +
Sbjct: 246 ITSHTMTIL--KGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDKREVLITGTAEAV 303
Query: 526 QAAQSLLQA 534
AQ L+ A
Sbjct: 304 GLAQFLINA 312
>gi|332215033|ref|XP_003256641.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Nomascus leucogenys]
gi|397470079|ref|XP_003806661.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Pan paniscus]
gi|179479950|gb|ACB86627.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 493
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 320 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 376
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 377 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 427
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 428 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 459
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 210 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 267
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 268 ----VEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEI 323
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 324 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 380
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 381 KAQGRIFGKLKEENF 395
>gi|449266969|gb|EMC77947.1| Insulin-like growth factor 2 mRNA-binding protein 2, partial
[Columba livia]
Length = 522
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 347 EQEV-VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDASERMVIITGP--P 403
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S G ++GKGG ++
Sbjct: 404 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVN 454
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 455 ELQNLTSAEVIVPRDQ---TPDENEEVIVKIIGHF 486
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 76/355 (21%), Positives = 143/355 (40%), Gaps = 56/355 (15%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTAS 238
++ +Q E R+L VGA+IGK G I+ L + + + + R A+
Sbjct: 108 SQPKQLEFPLRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDI--------HRKENAGAA 159
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
E P + ++ + R+I +K D + + +++ ++ VG L+GK G
Sbjct: 160 EKPITIHATPEGCSEAC--RMILDIMQKEAD-ETKSAEEIPLKILAHNSLVGRLIGKEGR 216
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL 358
+ ++ + TGT I I Q L I +R + + G A + +LR+ + + +
Sbjct: 217 NLKKIEQDTGTKITISPLQDL-TIYNPERTITVKGSTEACSKAQVEIMKKLREAYENDVV 275
Query: 359 NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCP 418
+ + L + G+ S+ GLS P
Sbjct: 276 AVNQQANLIPGLNLN----------ALGIFST-------------------GLSM---LP 303
Query: 419 SSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSG--SKSAIVTNTTVEIIVP 476
S+P A T H SS + GL G GS + + V + +P
Sbjct: 304 STPGARGAAAATPYHPFASSSA---YLSGLY----GAPPGSAFPHQHPLPEQEVVNLFIP 356
Query: 477 ENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG--STDRIVVISGTPDETQAAQ 529
+G++ G+ G ++ +L + +GA + + P G +++R+V+I+G P+ AQ
Sbjct: 357 TQAVGAIIGKKGQHIKQLARFAGASIKI-APAEGPDASERMVIITGPPEAQFKAQ 410
>gi|410970835|ref|XP_003991882.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Felis catus]
Length = 536
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 363 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 419
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 420 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 470
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 471 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 502
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 142/368 (38%), Gaps = 82/368 (22%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 124 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 178
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 179 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 223
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 224 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEVEIMKKL 282
Query: 350 RDNHFSGTL------NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
R+ + L N + S++ ++ S L P H F+
Sbjct: 283 REAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPTGPRGAPPAPPYHPFA----- 337
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
H G SL P H G HH E
Sbjct: 338 ---THSGYFSSLYPP--------------HQFGP----------FPHHHSYPE------- 363
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS--TDRIVVISGT 521
V + +P +G++ G+ G+++ +L + +GA + + P G ++R+V+I+G
Sbjct: 364 ----QEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI-APAEGPDVSERMVIITGP 418
Query: 522 PDETQAAQ 529
P+ AQ
Sbjct: 419 PEAQFKAQ 426
>gi|395529320|ref|XP_003766764.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Sarcophilus harrisii]
Length = 474
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAA 528
T ++ +P+++ GS+ G+ G + +LR SGA + + EP GS DRI+ I+GT D+ Q A
Sbjct: 396 NTTQVTIPKDLAGSIIGKGGQRIKQLRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 455
Query: 529 QSLLQ 533
LLQ
Sbjct: 456 XYLLQ 460
Score = 45.1 bits (105), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 29/206 (14%)
Query: 152 TAPSSSISYVSAVRPLSLESDRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRAL 211
T P++ I+ P + A +R + V RI + GAVIGKGG I+AL
Sbjct: 9 TFPNTEINGEFCKCPAEDMQEEQAFKRSRNTDEMVELRISLHSKNAGAVIGKGGKNIKAL 68
Query: 212 QSEAGAFISVGATMPECDERLITVTAS----------------EGPESRYSPAQKAVVLV 255
++ A +SV + ER+ +++A EG + SP + + +
Sbjct: 69 LTDYNASVSVPHS--SASERMXSISADIETIGEILKKIIPTLEEGLQLT-SPTATSQLPL 125
Query: 256 FSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIR 312
S +E + KG DF RL++ + G ++G G I E+R+ T T+I+
Sbjct: 126 ESGAVECLNYQHYKGSDFD------CELRLLIHQSLAGGIIGVKGXKIKELRENTQTTIK 179
Query: 313 IISDQLLKCISENDRVVQISGEFSKV 338
+ + S N RVV I G +V
Sbjct: 180 LFQECCPHSTSTN-RVVLIDGNPDRV 204
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
D G++IGKGG I+ L+ E+GA I + + ++R+IT+T ++
Sbjct: 405 DLAGSIIGKGGQRIKQLRHESGASIKIDEPLEGSEDRIITITGTQ 449
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 270 FSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329
+S G + ++ + + G ++GKGG I ++R +G SI+I D+ L+ DR++
Sbjct: 388 YSDLGGPINTTQVTIPKDLAGSIIGKGGQRIKQLRHESGASIKI--DEPLE--GSEDRII 443
Query: 330 QISGEFSKVKDAVY 343
I+G ++++A Y
Sbjct: 444 TITGTQDQIQNAXY 457
>gi|402860705|ref|XP_003894763.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 4 [Papio anubis]
Length = 542
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QEV + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 369 EQEV-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 425
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 426 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 476
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 508
>gi|358252903|dbj|GAA50475.1| poly(rC)-binding protein 2/3/4 [Clonorchis sinensis]
Length = 859
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 112/246 (45%), Gaps = 40/246 (16%)
Query: 189 RILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPA 248
R+L S +VG++IGK G ++ + E+GA I++ ER++T+T +
Sbjct: 203 RLLMSGKEVGSIIGKRGENVKKYREESGARINISDG--SSPERIVTITGTT--------- 251
Query: 249 QKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTG 308
+ + + F+ + + + DF+ +GLL R+ Q G ++GKGG+ I E+R++TG
Sbjct: 252 -EQISVAFTLMSQKFED---DFT--QGLL---RMAT---QCGSIIGKGGSRIKEVRELTG 299
Query: 309 TSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSS 368
SI++ S+ L + +R V ISG + V ++ D+ G + R + +
Sbjct: 300 ASIQVASEAL---PASTERTVTISGAAKAISKCVRHLCDIFVDSPAKGPVIPYRPKPAFT 356
Query: 369 VLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQT 428
T P S P +H ++ S T G + G H P SP +A
Sbjct: 357 SQNMTCPGSPF--PTGL-IHPAMTFS--------TNGSETTG-EHGF--PGSPNTCSANL 402
Query: 429 VTGVHL 434
+T L
Sbjct: 403 LTATEL 408
>gi|302654659|ref|XP_003019130.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
gi|291182834|gb|EFE38485.1| hypothetical protein TRV_06814 [Trichophyton verrucosum HKI 0517]
Length = 379
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 57 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GPL 113
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G I
Sbjct: 114 QGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKY 170
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 171 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 222
>gi|148665207|gb|EDK97623.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_d
[Mus musculus]
Length = 603
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 430 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 485
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 486 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 536
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 537 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 569
>gi|213410260|ref|XP_002175900.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
gi|212003947|gb|EEB09607.1| RNA-binding protein that suppresses calcineurin deletion Rnc1
[Schizosaccharomyces japonicus yFS275]
Length = 381
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/352 (21%), Positives = 144/352 (40%), Gaps = 66/352 (18%)
Query: 178 DARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTA 237
DA Q+++ R L S + G +IGK G + L+S + +P +R++T++
Sbjct: 78 DAAYATQQLTLRALLSTREAGIIIGKSGKNVAELRSTTNVKAGITKAVPNVHDRVLTISG 137
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
S R A + ++ +F++ + +D + + L RL++A + +G ++G+ G
Sbjct: 138 SLENVVR---AYRFIIDIFAKNSTNANGTPVDPHAPRKL----RLLIAHSLMGSIIGRNG 190
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ S R+I+ + + S +R V++ G + A++ + L D+
Sbjct: 191 LRIKLIQD--KCSCRMIASKDMLPQS-TERTVEVHGTVENLHAAIWEIGKCLIDDW---- 243
Query: 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDC 417
R +V +P SRL P S AVS + P + M G +
Sbjct: 244 -----ERGAGTVF--YNPVSRLTQPFPTVATSPRAVSQQMT-PAIPSPMMDGGAAPYFFP 295
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPE 477
P++P+ T I +P
Sbjct: 296 PAAPQQ-------------------------------------------PRITQNISIPA 312
Query: 478 NVIGSVYGENGSNLLRLRQISGAKV-IVHEPRLGSTDRIVVISGTPDETQAA 528
+++G + G GS + +R+ SG+K+ I EP + +R+ I+GT +E + A
Sbjct: 313 DMVGCIIGRAGSKISEIRRSSGSKISIAKEPHDETGERMFTITGTHEENERA 364
>gi|147818796|emb|CAN67284.1| hypothetical protein VITISV_021596 [Vitis vinifera]
Length = 332
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 10/163 (6%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATM---PECDERLITVTASEG 240
Q S +I N +VG +IGKGG I+ LQ ++GA I V M P RL+ + G
Sbjct: 95 QGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRLVELM---G 151
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLV--VASNQVGCLLGKGGT 298
+ + A++ + V S G S G+ G + + V V +N+VG ++GKGG
Sbjct: 152 TPDQIAKAEQLINDVLSEAEAGGS--GIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGE 209
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
I M+ TG I++I L + +R VQI G +++ A
Sbjct: 210 TIKNMQARTGARIQVIPLHLPPGDTSMERTVQIDGTSEQIESA 252
>gi|348582424|ref|XP_003476976.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
[Cavia porcellus]
Length = 532
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 359 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 415
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 416 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 466
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 467 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 498
>gi|126341837|ref|XP_001363414.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 3-like
[Monodelphis domestica]
Length = 586
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 16/141 (11%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGA-TMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + P+ ER++ +T PE+++ KA +
Sbjct: 423 VGAIIGKMGQHIKQLSRFAGASIKIAPPETPDAKERMVIITGP--PEAQF----KAQGRI 476
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E F + + + A++ V S G ++GKGG ++E++ +T + +
Sbjct: 477 YGKLKEENF-----FGPKEEVKLEAQIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 531
Query: 316 DQLLKCISENDRV-VQISGEF 335
DQ+ END V V+I+G F
Sbjct: 532 DQIP---DENDEVIVKITGHF 549
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
+ Q +V R+L VGA+IGK G IR + + + I + GA+ E+
Sbjct: 191 GQNHQNDVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAS-----EKP 245
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
IT+ AS PE S A K ++ + + + T F+ + +++ +N VG L
Sbjct: 246 ITIHAS--PEG-CSTACKIIMEIMQKEAQDTK-----FTDE----IPLKILAHNNFVGRL 293
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+GK G + ++ + T T I I Q L + +R + + G A + ++R++
Sbjct: 294 IGKEGRNLKKIEQDTDTKITISPLQEL-TLYNPERTITVKGSIETCGKAEEEIMKKIRES 352
Query: 353 HFS 355
+ S
Sbjct: 353 YES 355
>gi|345796407|ref|XP_003434167.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 1 [Canis lupus familiaris]
Length = 488
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 315 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 371
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 372 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 422
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 423 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 454
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 205 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 262
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A V + +L E L +++ G +
Sbjct: 263 ----VEACANAEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHHSYPEQEI 318
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 319 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 375
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 376 KAQGRIFGKLKEENF 390
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 119 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 173
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 174 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 218
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 219 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEVEIMKKL 277
Query: 350 RDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R+ + L +V T + +S L P FG
Sbjct: 278 REAFENDML---------AVNTHSGYFSSLYPPHQFG 305
>gi|351709601|gb|EHB12520.1| Insulin-like growth factor 2 mRNA-binding protein 2 [Heterocephalus
glaber]
Length = 493
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 320 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 376
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 377 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 427
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 428 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 459
>gi|345796405|ref|XP_535832.3| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2
isoform 2 [Canis lupus familiaris]
Length = 531
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 358 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 414
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 415 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 465
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 466 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 497
>gi|350591798|ref|XP_003483335.1| PREDICTED: replication factor C (activator 1) 4, 37kDa [Sus scrofa]
Length = 578
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 405 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 461
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 462 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 512
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 513 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 544
>gi|145207996|ref|NP_898850.2| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
gi|81889459|sp|Q5SF07.1|IF2B2_MOUSE RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|46577878|gb|AAT01428.1| insulin-like growth factor 2 mRNA-binding protein 2 [Mus musculus]
Length = 592
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 419 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 474
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 475 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 525
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 526 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 558
>gi|291400301|ref|XP_002716510.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 2 [Oryctolagus cuniculus]
Length = 556
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
>gi|326378263|gb|ADZ57231.1| neuro-oncological ventral antigen [Branchiostoma floridae]
Length = 511
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 19/232 (8%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESR 244
++L + G++IGKGG I LQ E GA I + + P ER++ +T SE
Sbjct: 68 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVITGSE---DS 124
Query: 245 YSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMR 304
K ++ S+ + ++ + ++N ++VV ++ G ++GKGG I +
Sbjct: 125 LKSVHKFLMEKISQAPQPPAKSPSEQNANNNRAKQVKIVVPNSTAGLIIGKGGATIKFIM 184
Query: 305 KVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTL-NTART 363
+ TG+ ++ IS + I+ +RV+ I+GE + A + ++ ++ SG+ N +
Sbjct: 185 EQTGSRVQ-ISQKATNGINLPERVITITGEPEQNDKACAFIVNKIVEDPQSGSCPNISYA 243
Query: 364 RSTSSVLTET---SPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLS 412
T V SPY+ P G S A++ Q + +LG S
Sbjct: 244 TYTGPVANANPTGSPYASPMSPLQNGSASPTALA--------AQSLSNLGFS 287
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH---EPRLGSTDRIVVISGTPDETQA 527
VE+ VPEN++G++ G+ G L+ ++ SGA++ + E G+ +R V I+GTP TQ
Sbjct: 429 VELEVPENLVGAILGKGGKTLVEFQEYSGARIQISKKGEFTPGTNNRKVTITGTPAATQT 488
Query: 528 AQSLLQAFI 536
AQ L++A I
Sbjct: 489 AQYLVRARI 497
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQA 527
+++++P GS+ G+ G +++L++ +GA + + + G+T+RIVVI+G+ D ++
Sbjct: 68 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSNDFYPGTTERIVVITGSEDSLKS 127
Query: 528 AQSLLQAFILTGP 540
L I P
Sbjct: 128 VHKFLMEKISQAP 140
>gi|301759725|ref|XP_002915743.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 2 [Ailuropoda melanoleuca]
Length = 556
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A V + +L E L +++ G +
Sbjct: 331 ----VEACANAEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHHSYPEQEI 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 187 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 241
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 242 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 286
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 287 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEVEIMKKL 345
Query: 350 RDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R+ + L +V T + +S L P FG
Sbjct: 346 REAFENDML---------AVNTHSGYFSSLYPPHQFG 373
>gi|148665204|gb|EDK97620.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Mus musculus]
Length = 596
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 423 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 478
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 479 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 529
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 530 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 562
>gi|56118219|ref|NP_001007226.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform b [Homo
sapiens]
gi|4883681|gb|AAD31596.1|AF057352_1 hepatocellular carcinoma autoantigen [Homo sapiens]
gi|119598615|gb|EAW78209.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_a
[Homo sapiens]
gi|410223072|gb|JAA08755.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251294|gb|JAA13614.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302888|gb|JAA30044.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342485|gb|JAA40189.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 556
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 331 ----VEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEI 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
>gi|395540426|ref|XP_003772156.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein
3-B-like [Sarcophilus harrisii]
Length = 587
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 16/141 (11%)
Query: 197 VGAVIGKGGTIIRALQSEAGAFISVGA-TMPECDERLITVTASEGPESRYSPAQKAVVLV 255
VGA+IGK G I+ L AGA I + P+ ER++ +T PE+++ KA +
Sbjct: 423 VGAIIGKMGQHIKQLSRFAGASIKIAPPETPDAKERMVIITGP--PEAQF----KAQGRI 476
Query: 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315
+ +L E F + + + A + V S G ++GKGG ++E++ +T + +
Sbjct: 477 YGKLKEENF-----FGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPR 531
Query: 316 DQLLKCISENDRV-VQISGEF 335
DQ+ END V V+I+G F
Sbjct: 532 DQIP---DENDEVIVKITGHF 549
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 24/183 (13%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
+ Q ++ R+L VGA+IGK G IR + + + I + GA+ E+
Sbjct: 191 GQNHQNDIPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAGAS-----EKP 245
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCL 292
IT+ AS PE S A K ++ + + + T F+ + +++ +N VG L
Sbjct: 246 ITIHAS--PEG-CSTACKIIMEIMQKEAQDTK-----FTDE----IPLKILAHNNFVGRL 293
Query: 293 LGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352
+GK G + ++ + T T I I Q L + +R + + G A + ++R++
Sbjct: 294 IGKEGRNLKKIEQDTDTKITISPLQEL-TLYNPERTITVKGSIETCGKAEEEIMKKIRES 352
Query: 353 HFS 355
+ S
Sbjct: 353 YES 355
>gi|332215029|ref|XP_003256639.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Nomascus leucogenys]
Length = 536
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 363 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 419
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 420 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 470
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 471 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 502
>gi|281354032|gb|EFB29616.1| hypothetical protein PANDA_003725 [Ailuropoda melanoleuca]
Length = 434
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 291 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 347
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 348 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 398
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 399 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 430
>gi|402593291|gb|EJW87218.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 359
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 147/341 (43%), Gaps = 79/341 (23%)
Query: 208 IRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKG 267
I+ L+SE A ++V + + ER+ T+ A+ + V+ + + +I ++
Sbjct: 61 IKRLRSEYDANVTVPDS--QTPERIATIVAT----------VENVLSIVTEIIPKLDDRT 108
Query: 268 L---DFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISE 324
L + SN+ + R++V S+ G ++G+ G+ I EM++ G +++ + +C +
Sbjct: 109 LQSREGDSNR--PIELRVLVHSSHAGAVIGRQGSKIKEMKEELGVQMKVFA----QCPPQ 162
Query: 325 N-DRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPY-SRLKDP 382
+ +RVV I G K+ V ++ L++ G T PY S DP
Sbjct: 163 STERVVSIKGAPDKILACVNHIMNMLKEIPIKGV---------------TKPYESMFYDP 207
Query: 383 ASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGR 442
+ + ++ P + M A T G + GR
Sbjct: 208 SYSSEYGGYPPDRNYRGPMIRGPM-------------------AVTSYG-------NYGR 241
Query: 443 GWSQGLSHHKGGLELGSGSKSAIV------TNTTVEIIVPENVIGSVYGENGSNLLRLRQ 496
+ + + G G SA+ + ++ +P + G++ G+ G + R+R+
Sbjct: 242 SFQRQIG--------GRGPLSAVALPPYMGPEESTQVTIPNELGGTIIGKGGERINRVRE 293
Query: 497 ISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537
SGA+++V P+ S +RI+ I+GT Q AQ LLQ +++
Sbjct: 294 ESGAQIVVG-PQQESGERIITITGTSTAIQTAQYLLQQWLV 333
>gi|397470077|ref|XP_003806660.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Pan paniscus]
gi|179479906|gb|ACB86626.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 536
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 363 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 419
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 420 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 470
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 471 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 502
>gi|410970839|ref|XP_003991884.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Felis catus]
Length = 542
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 369 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 425
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 426 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 476
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 508
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 142/368 (38%), Gaps = 82/368 (22%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 130 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 184
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 185 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 229
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 230 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEVEIMKKL 288
Query: 350 RDNHFSGTL------NTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLT 403
R+ + L N + S++ ++ S L P H F+
Sbjct: 289 REAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLPPPTGPRGAPPAPPYHPFA----- 343
Query: 404 QGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKS 463
H G SL P H G HH E
Sbjct: 344 ---THSGYFSSLYPP--------------HQFGP----------FPHHHSYPE------- 369
Query: 464 AIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGS--TDRIVVISGT 521
V + +P +G++ G+ G+++ +L + +GA + + P G ++R+V+I+G
Sbjct: 370 ----QEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI-APAEGPDVSERMVIITGP 424
Query: 522 PDETQAAQ 529
P+ AQ
Sbjct: 425 PEAQFKAQ 432
>gi|332818640|ref|XP_001151234.2| PREDICTED: LOW QUALITY PROTEIN: insulin-like growth factor 2 mRNA
binding protein 2 isoform 7 [Pan troglodytes]
Length = 599
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|4191610|gb|AAD09827.1| IGF-II mRNA-binding protein 2 [Homo sapiens]
gi|18204201|gb|AAH21290.1| Insulin-like growth factor 2 mRNA binding protein 2 [Homo sapiens]
gi|123982692|gb|ABM83087.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
gi|157928388|gb|ABW03490.1| insulin-like growth factor 2 mRNA binding protein 2 [synthetic
construct]
Length = 598
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 425 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 481
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 482 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 532
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 533 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 564
>gi|410970837|ref|XP_003991883.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Felis catus]
Length = 493
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 320 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 376
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 377 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 427
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 428 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 459
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 210 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 267
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A V + +L E L +++ G +
Sbjct: 268 ----VEACANAEVEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHHSYPEQEI 323
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 324 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 380
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 381 KAQGRIFGKLKEENF 395
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 124 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 178
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 179 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 223
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 224 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEVEIMKKL 282
Query: 350 RDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R+ + L +V T + +S L P FG
Sbjct: 283 REAFENDML---------AVNTHSGYFSSLYPPHQFG 310
>gi|291400299|ref|XP_002716509.1| PREDICTED: insulin-like growth factor 2 mRNA binding protein 2-like
isoform 1 [Oryctolagus cuniculus]
Length = 599
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|115399196|ref|XP_001215187.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192070|gb|EAU33770.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 459
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 178/423 (42%), Gaps = 66/423 (15%)
Query: 145 QRNSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQQQE----VSFRILCSNDKVGAV 200
Q ++V+ AP ++ S ++ + +D A+ + + Q+ + R + S+ + V
Sbjct: 57 QNDTVVPDAPKAASSETQPIQSTASHADAGASQTEQQRPQDESSWIHIRAVISSQEAATV 116
Query: 201 IGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
IGKGG + ++ +GA +V ER++TV+ GP Q AV F +I
Sbjct: 117 IGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVS---GP-------QDAVAKAFGLII 166
Query: 261 EGTSEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLL 319
+ + LD S+ + RL++ +G ++GKGG I E+++ +G + SD L
Sbjct: 167 RTLNNEPLDAPSTAQSKTYPLRLLIPHILIGSIIGKGGGRIREIQEASGARLN-ASDACL 225
Query: 320 KCISENDRVVQISGEFSKVKDAVYNVTGRLRDN---HFSGTLNTAR-TRSTSSVLT---- 371
+E R + I G V A Y V L + F G +A TRS
Sbjct: 226 PLSTE--RSLVILGVADAVHIATYYVAVTLVEQLTERFGGPAASAYATRSGGPAGAVPGG 283
Query: 372 -ETSPY------SRLKDPASFGVHS-----------SVAVSHDFSQP-PLTQGMDHLGLS 412
+ PY + P +F H V H + P P+ Q H G +
Sbjct: 284 MQVVPYVPQPAGGQYGHPDTFKRHHPHPNRGAAGAYGVPYLHGQAAPTPVAQPAMHYGAA 343
Query: 413 ---HSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNT 469
++ P P + Q RG ++ GG G
Sbjct: 344 PTPYAGAGPHQPAPYPPQVPQ----------PRGGPTPVAPVAGGAMPGQ--------PL 385
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T +I +P +++G++ G+ G+ + +R +SG+ + ++EP+ S +R+V I+GT + Q A
Sbjct: 386 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 445
Query: 530 SLL 532
+L
Sbjct: 446 YML 448
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPES 243
Q ++ +I ND VGA+IGKGG I ++ +G+ I + +ERL+T+T ++ E
Sbjct: 383 QPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQ--EC 440
Query: 244 RYSPAQKAVVLVFSRL 259
Q A+ +++SRL
Sbjct: 441 N----QMALYMLYSRL 452
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334
G + ++ + ++ VG ++GKGG I+E+R ++G+ I+I Q + N+R+V I+G
Sbjct: 382 GQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE----NSNERLVTITGT 437
Query: 335 FSKVKDAVYNVTGRL 349
+ A+Y + RL
Sbjct: 438 QECNQMALYMLYSRL 452
>gi|82540955|ref|XP_724754.1| RNA-binding protein Nova-2 [Plasmodium yoelii yoelii 17XNL]
gi|23479512|gb|EAA16319.1| RNA-binding protein Nova-2 [Plasmodium yoelii yoelii]
Length = 338
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 152/369 (41%), Gaps = 60/369 (16%)
Query: 172 DRVATLDARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GATMPEC 228
D A + RTQ V ++L +N G++IGK G II ++++ G + + + P
Sbjct: 7 DGQAIEEDRTQLCFV--KMLINNLVAGSIIGKNGEIISGIENKTGCSLKLSPNNSFFPNT 64
Query: 229 DERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQ 288
+R++ + + + VVL+ I S + + K R+VV +
Sbjct: 65 QKRVLVICGKKKQINN-------VVLIILDKIRQISSLANNKNEKKIKTYTCRIVVPKSA 117
Query: 289 VGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
V ++GKGG I +++ TGT I++ + + +R++ I G F+ +KD V
Sbjct: 118 VSAIIGKGGYQIKQLQNKTGTKIQVSNREC----GLYERIITIVGSFASIKDTATKVIEA 173
Query: 349 LR-DNHFSGTLNTARTRSTS-SVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGM 406
++ D + LN + + +T+ + + +K SH+F +
Sbjct: 174 IQTDPNLKDLLNVNYNKELNIETITKINNRNYIK-----------KFSHNF--------I 214
Query: 407 DHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIV 466
+H+ ++ L P ++ + ++ L ++
Sbjct: 215 NHVHMNRYL-IPQQYGIFQHEHYVDANMINY-------------------LMRNNRDLFN 254
Query: 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKV-IVHEPRL--GSTDRIVVISGTPD 523
+ I +P+ IGSV G+NGS L + +GAK+ I + L G+ DR I GT
Sbjct: 255 LQCEISIEIPDKFIGSVIGKNGSRLTNIMNSTGAKIKISKKGELIPGTFDRKTKIIGTVA 314
Query: 524 ETQAAQSLL 532
AA L+
Sbjct: 315 AVHAAHVLV 323
>gi|64085377|ref|NP_006539.3| insulin-like growth factor 2 mRNA-binding protein 2 isoform a [Homo
sapiens]
gi|224471831|sp|Q9Y6M1.2|IF2B2_HUMAN RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=Hepatocellular carcinoma autoantigen p62; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|119598617|gb|EAW78211.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Homo sapiens]
gi|158254760|dbj|BAF83353.1| unnamed protein product [Homo sapiens]
gi|410223074|gb|JAA08756.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410251296|gb|JAA13615.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410302886|gb|JAA30043.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
gi|410342487|gb|JAA40190.1| insulin-like growth factor 2 mRNA binding protein 2 [Pan
troglodytes]
Length = 599
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|332215037|ref|XP_003256643.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 6 [Nomascus leucogenys]
Length = 542
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 369 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 425
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 426 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 476
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 508
>gi|397470081|ref|XP_003806662.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Pan paniscus]
gi|179479866|gb|ACB86625.1| insulin-like 2 growth factor 2-binding protein 2 [Homo sapiens]
Length = 542
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 369 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 425
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 426 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 476
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 508
>gi|301759723|ref|XP_002915742.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2-like
isoform 1 [Ailuropoda melanoleuca]
Length = 599
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|148665206|gb|EDK97622.1| insulin-like growth factor 2 mRNA binding protein 2, isoform CRA_c
[Mus musculus]
Length = 543
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 370 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 425
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 426 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 476
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 477 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 509
>gi|395839833|ref|XP_003792780.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 5 [Otolemur garnettii]
Length = 441
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 17/159 (10%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTA 237
A+ +QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 264 AQYPEQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITG 322
Query: 238 SEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGG 297
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG
Sbjct: 323 P--PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGG 371
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
++E++ +T + + DQ EN+ V V+I G F
Sbjct: 372 KTVNELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 407
>gi|47209955|emb|CAF90944.1| unnamed protein product [Tetraodon nigroviridis]
Length = 164
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 195 DKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVL 254
+VG++IGK G ++ ++ E+GA I++ ER++T+T A +A+
Sbjct: 6 QEVGSIIGKKGETVKKIREESGARINISEG--SSPERIVTITG----------ATEAIFR 53
Query: 255 VFSRLIEGTSEKGLDFSSNKGLL----VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
F+ + + E SN + V RLV +Q G L+GKGG+ I E+R+ TG
Sbjct: 54 TFAMIAQKFEEDINAAMSNSNVTSKPPVTLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQ 113
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNV 345
+++ D L +R V ISG + V ++
Sbjct: 114 VQVAGDMLP---DSTERAVTISGTPQAITQCVRHI 145
Score = 38.9 bits (89), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDE-TQA 527
T+ ++ P + GS+ G+ GS + +R+ +GA+V V L ST+R V ISGTP TQ
Sbjct: 82 TLRLVFPGSQCGSLIGKGGSKIKEIRETTGAQVQVAGDMLPDSTERAVTISGTPQAITQC 141
Query: 528 AQSLLQAFILTGP 540
+ + + + P
Sbjct: 142 VRHICSVMLESPP 154
>gi|395839827|ref|XP_003792777.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 2 [Otolemur garnettii]
Length = 554
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 381 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 437
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 438 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 488
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 489 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 520
Score = 42.4 bits (98), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 271 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 328
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 329 ----VEACANAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFSPFPHHHSYPEQEI 384
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 385 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 441
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 442 KAQGRIFGKLKEENF 456
>gi|75765942|pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
gi|75765943|pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
gi|75765946|pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765947|pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765948|pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765950|pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 58.9 bits (141), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQ 529
T ++ +P+++ GS+ G+ G + ++R SGA + + EP GS DRI+ I+GT D+ Q AQ
Sbjct: 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 67
Query: 530 SLLQ 533
LLQ
Sbjct: 68 YLLQ 71
>gi|307175339|gb|EFN65358.1| Poly(rC)-binding protein 3 [Camponotus floridanus]
Length = 547
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 74/148 (50%), Gaps = 20/148 (13%)
Query: 206 TIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265
TI +Q ++GA I++ C ER++TVT GP + KA L+ + E S+
Sbjct: 19 TIRLIMQGKSGAKINISDG--SCPERIVTVT---GPTNSIF---KAFTLICKKFEEWCSQ 70
Query: 266 KGLDFSSNKGLL--------VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQ 317
D + RL+V ++Q G L+GKGG+ I E+R+VTG SI++ S+
Sbjct: 71 F-HDMQGGGAGGGGGVSRPPITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEM 129
Query: 318 LLKCISENDRVVQISGEFSKVKDAVYNV 345
L + +R V ISG + +Y++
Sbjct: 130 L---PNSTERAVTISGTSEAITQCIYHI 154
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIV---HEPRLGSTDRIVVISGTPDE 524
N T E+ VP +IG + G+ G+ + +RQISGA + + E G+TDR + I+G PD
Sbjct: 351 NQTHEMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDA 410
Query: 525 TQAAQSLLQ 533
AQ L+
Sbjct: 411 VALAQYLIN 419
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 282 LVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
+ V + +GC++GKGGT I+E+R+++G IR IS+ + DR + I+G V A
Sbjct: 356 MTVPNELIGCIIGKGGTKIAEIRQISGAMIR-ISNCEEREGGATDRTITITGNPDAVALA 414
Query: 342 VY 343
Y
Sbjct: 415 QY 416
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGT 521
T+ +IVP + GS+ G+ GS + +R+++GA + V L ST+R V ISGT
Sbjct: 91 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGT 143
>gi|328784994|ref|XP_003250531.1| PREDICTED: RNA-binding protein Nova-2-like [Apis mellifera]
Length = 514
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ---QQEVSFRILCSNDKVGAVIGK 203
+S + T PS I+ S RPL +++ AT + ++L GA+IGK
Sbjct: 4 DSGMETCPSPEIAD-SRKRPLDCDAENGATKRSHYGSGGDGTYHLKVLVPGVAAGAIIGK 62
Query: 204 GGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I LQ + GA + + + P ER+ +T S +A++ V ++
Sbjct: 63 GGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITGS----------LEAIMAVMDFIM 112
Query: 261 EGTSEK-------GLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
+ EK +DF S K +++V ++ G ++GK G I ++++ G+
Sbjct: 113 DKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSY 172
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++I Q K +S +R + + GE ++A+ + ++ D+ SGT
Sbjct: 173 VQI--SQKAKDVSLQERCITVIGEKENNRNALMMILAKVADDPHSGT 217
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT----VEI 473
P P + +HL +S G G +Q L L S S + + N V+I
Sbjct: 380 PFDPFRQNNTAASAIHLNNNS-FGLGTNQ--------LSLVSKSPTQVDANNKETKKVDI 430
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAAQS 530
+ E ++G++ G G L+ ++ +SGA + + + + G+ +RIV I+G P+ AQ
Sbjct: 431 EIAEVIVGAILGPGGRALIEIQHLSGANIQISKKGMFAPGTRNRIVTITGYPNAIGTAQY 490
Query: 531 LLQAFI 536
L++ I
Sbjct: 491 LIEQRI 496
>gi|320034805|gb|EFW16748.1| KH domain RNA-binding protein [Coccidioides posadasii str.
Silveira]
Length = 345
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 19/180 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSTKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GP- 100
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN-----ARLVVASNQVGCLLGKGG 297
KA +V L+EG + G+ G++ N RL+++ NQ+G ++G+ G
Sbjct: 101 --LQGTAKAYGMVAKSLLEGAPQMGMG-----GIIQNNGTHPVRLLISHNQMGTIIGRNG 153
Query: 298 TIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
I ++ +G +R+++ + + S +R+V++ G ++ AV+ + L D+ GT
Sbjct: 154 LKIKCIQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAVWEIGKCLIDDWQRGT 210
>gi|291240053|ref|XP_002739934.1| PREDICTED: far upstream element-binding protein-like [Saccoglossus
kowalevskii]
Length = 767
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 180 RTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASE 239
R Q +S + VG VIG+GG I LQ+E+G I + +R+ T+T +
Sbjct: 119 RPGQSSLSEEYAVPDKLVGLVIGRGGEQITRLQAESGCKIQIAQDSGGLPDRMCTLTGN- 177
Query: 240 GPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGL---LVNARLVVASNQVGCLLGKG 296
P++ ++A L+ R+IE +G S+ GL L++ SN+VG ++GKG
Sbjct: 178 -PQA----IERAKALI-DRIIE--RGQGPAVGSDGGLGDGNTTIELMIPSNKVGLVIGKG 229
Query: 297 GTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341
G +I ++++ G + +I D S D+ +++SG+ K K A
Sbjct: 230 GEMIKKLQERAGVKMVMIQDATTSGTS--DKPLRVSGDPQKCKHA 272
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL--GSTDRIVVISGTPDET 525
NTT+E+++P N +G V G+ G + +L++ +G K+++ + G++D+ + +SG P +
Sbjct: 210 NTTIELMIPSNKVGLVIGKGGEMIKKLQERAGVKMVMIQDATTSGTSDKPLRVSGDPQKC 269
Query: 526 QAAQSLLQAFI 536
+ A+ L+ I
Sbjct: 270 KHARELVNELI 280
Score = 42.4 bits (98), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 457 LGSGSKSAI----VTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGST 512
LG+G++ ++ + E VP+ ++G V G G + RL+ SG K+ + + G
Sbjct: 109 LGNGNQDEFERPGQSSLSEEYAVPDKLVGLVIGRGGEQITRLQAESGCKIQIAQDSGGLP 168
Query: 513 DRIVVISGTPDETQAAQSLLQAFILTG 539
DR+ ++G P + A++L+ I G
Sbjct: 169 DRMCTLTGNPQAIERAKALIDRIIERG 195
>gi|328851244|gb|EGG00400.1| hypothetical protein MELLADRAFT_39696 [Melampsora larici-populina
98AG31]
Length = 420
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 14/181 (7%)
Query: 181 TQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEG 240
T Q + R L +IGKGG I ++ ++GA ++ +P ER+++V G
Sbjct: 85 TATQTIQMRALIVTQDASIIIGKGGRHINEIREKSGARATISEAVPGNAERILSVG---G 141
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKG-LLVNARLVVASNQVGCLLGKGGTI 299
P S KA L+ R+ +++ D S G V R VV ++++G ++GK G+
Sbjct: 142 PLDAVS---KAFGLIVRRI----NDEPFDVPSVPGSRAVTIRFVVPNSRMGSVIGKAGSK 194
Query: 300 ISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGTLN 359
I E++ ++G ++ S+ +L +E RV+ +SG V AVY V L +N N
Sbjct: 195 IKEIQDMSGARVQ-ASEAMLPGSTE--RVLSVSGVADAVHIAVYYVGMILVENQDRMPAN 251
Query: 360 T 360
T
Sbjct: 252 T 252
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
T+ +VP + +GSV G+ GS + ++ +SGA+V E L GST+R++ +SG D A
Sbjct: 174 TIRFVVPNSRMGSVIGKAGSKIKEIQDMSGARVQASEAMLPGSTERVLSVSGVADAVHIA 233
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG-----STDRIVVISGTPDE 524
T +I +P ++G+V G+ G + +RQ S + + EP G + +R+V I+G P +
Sbjct: 342 TQQIYIPNELVGAVIGKGGQKINEIRQASATHIKIMEPGEGGQAASTNERLVTITGQPLQ 401
Query: 525 TQAAQSLL 532
Q A LL
Sbjct: 402 IQMAVQLL 409
Score = 40.0 bits (92), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS-DQLLKCISENDRVVQISGEFSKVK 339
++ + + VG ++GKGG I+E+R+ + T I+I+ + + S N+R+V I+G+ +++
Sbjct: 344 QIYIPNELVGAVIGKGGQKINEIRQASATHIKIMEPGEGGQAASTNERLVTITGQPLQIQ 403
Query: 340 DAVYNVTGRL 349
AV + RL
Sbjct: 404 MAVQLLYQRL 413
>gi|68071447|ref|XP_677637.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497827|emb|CAH98378.1| conserved hypothetical protein [Plasmodium berghei]
Length = 337
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/372 (22%), Positives = 157/372 (42%), Gaps = 70/372 (18%)
Query: 174 VATLDARTQQQEVSF-RILCSNDKVGAVIGKGGTIIRALQSEAGAFISV---GATMPECD 229
V T+ T Q + F ++L +N G++IGK G II ++++ G + + + P
Sbjct: 8 VQTIKGDTNQ--LCFVKMLINNLLAGSIIGKNGEIISGIENKTGCSLKLSPNNSFFPNTQ 65
Query: 230 ERLITVTASEGPESRYSPAQKAVVLVFSRL--IEGTSEKGLDFSSNKGLLVNARLVVASN 287
+R++ + + ++++ ++ I + K S NK R+VV +
Sbjct: 66 KRVLVICGKQ------EQINNVIIIILDKIRQISLPNNK----SENKIQTYTCRIVVPKS 115
Query: 288 QVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTG 347
V ++GKGG I +++ +TGT I+I + + +R++ I G F +KD V
Sbjct: 116 AVSAIIGKGGYQIKQLQNITGTKIQISNREY----GLYERIITIVGPFESIKDTATKVIA 171
Query: 348 RLR-DNHFSGTLNTARTRSTS-SVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQG 405
++ D + LN + + +T+++ + +++ +SH+F
Sbjct: 172 SIQTDPNLKDLLNVNYNKELNIETITKSNNRNDIRN-----------MSHNF-------- 212
Query: 406 MDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAI 465
++H+ + + P+ + GV R V L + L
Sbjct: 213 INHVHMGRYI----IPQQY------GV-FRHEQYVDANMMNYLMRNNRDL---------- 251
Query: 466 VTNTTVEII--VPENVIGSVYGENGSNLLRLRQISGAKVIVH---EPRLGSTDRIVVISG 520
N EI +P+ IGSV G+NG+ L + +GA++ + E G+ DR I G
Sbjct: 252 -FNLPCEIFIEIPDEFIGSVIGKNGARLTNIMNSTGAQIKISRKGELVPGTFDRKTQIIG 310
Query: 521 TPDETQAAQSLL 532
T AA L+
Sbjct: 311 TVAAVHAAHVLV 322
>gi|380026049|ref|XP_003696774.1| PREDICTED: RNA-binding protein Nova-2-like isoform 1 [Apis florea]
Length = 514
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ---QQEVSFRILCSNDKVGAVIGK 203
+S + T PS I+ S RPL +++ AT + ++L GA+IGK
Sbjct: 4 DSGMETCPSPEIAD-SRKRPLDCDAENGATKRSHYGSGGDGTYHLKVLVPGVAAGAIIGK 62
Query: 204 GGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I LQ + GA + + + P ER+ +T S +A++ V ++
Sbjct: 63 GGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITGS----------LEAIMAVMDFIM 112
Query: 261 EGTSEK-------GLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
+ EK +DF S K +++V ++ G ++GK G I ++++ G+
Sbjct: 113 DKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSY 172
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++I Q K +S +R + + GE ++A+ + ++ D+ SGT
Sbjct: 173 VQI--SQKAKDVSLQERCITVIGEKENNRNALMMILAKVADDPHSGT 217
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT----VEI 473
P P + +HL +S G G +Q L L S S + + N V+I
Sbjct: 380 PFDPFRQNNTAASAIHLNNNS-FGLGTNQ--------LSLVSKSPTQVDANNKETKKVDI 430
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAAQS 530
+ E ++G++ G G L+ ++ +SGA + + + + G+ +RIV I+G P+ AQ
Sbjct: 431 EIAEVIVGAILGPGGRALIEIQHLSGANIQISKKGMFAPGTRNRIVTITGYPNAIGTAQY 490
Query: 531 LLQAFI 536
L++ I
Sbjct: 491 LIEQRI 496
>gi|340714094|ref|XP_003395567.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus terrestris]
gi|350427987|ref|XP_003494948.1| PREDICTED: RNA-binding protein Nova-2-like [Bombus impatiens]
Length = 514
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 29/227 (12%)
Query: 147 NSVLTTAPSSSISYVSAVRPLSLESDRVATLDARTQ---QQEVSFRILCSNDKVGAVIGK 203
+S + T PS I+ S RPL +++ AT + ++L GA+IGK
Sbjct: 4 DSGMETCPSPEIAD-SRKRPLDCDAENGATKRSHYGSGGDGTYHLKVLVPGVAAGAIIGK 62
Query: 204 GGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260
GG I LQ + GA + + + P ER+ +T S +A++ V ++
Sbjct: 63 GGDTIAQLQKDTGARVKMSKSHDFYPGTTERVCLITGS----------LEAIMAVMDFIM 112
Query: 261 EGTSEK-------GLDFSSNKGLL---VNARLVVASNQVGCLLGKGGTIISEMRKVTGTS 310
+ EK +DF S K +++V ++ G ++GK G I ++++ G+
Sbjct: 113 DKIREKPDLTLKTTVDFESGKTTAERDKQVKILVPNSTAGMIIGKAGNYIKQIKEECGSY 172
Query: 311 IRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++I Q K +S +R + + GE ++A+ + ++ D+ SGT
Sbjct: 173 VQI--SQKAKDVSLQERCITVIGEKENNRNALMMILAKVADDPHSGT 217
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 16/126 (12%)
Query: 418 PSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTT----VEI 473
P P + +HL +S G G +Q L L S S + + N V+I
Sbjct: 380 PFDPFRQNNTAASAIHLNNNS-FGLGTNQ--------LSLVSKSPTQVDANNKETKKVDI 430
Query: 474 IVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL---GSTDRIVVISGTPDETQAAQS 530
+ E ++G++ G G L+ ++ +SGA + + + + G+ +RIV I+G P+ AQ
Sbjct: 431 EIAEVIVGAILGPGGRALIEIQHLSGANIQISKKGMFAPGTRNRIVTITGYPNAIGTAQY 490
Query: 531 LLQAFI 536
L++ I
Sbjct: 491 LIEQRI 496
>gi|429858530|gb|ELA33346.1| kh domain rna-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 377
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 89/182 (48%), Gaps = 13/182 (7%)
Query: 180 RTQQQ----EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITV 235
RT+++ +++ R + S+ + G +IGK G + L+ E G V + +R++T+
Sbjct: 39 RTEEEYAVSQLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTI 98
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
T KA +V L+EG G+ +L+++ NQ+G ++G+
Sbjct: 99 TGE------IQAISKAYAIVAQALLEGAPAMGMGGVVQNNGTHPIKLLISHNQMGTIIGR 152
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355
G I ++ V+G +R+++ + + S +R+V++ G +K AV+ + L D+
Sbjct: 153 QGLKIKHIQDVSG--VRMVAQKEMLPQS-TERIVEVQGTPDGIKAAVWEICKCLVDDWQR 209
Query: 356 GT 357
GT
Sbjct: 210 GT 211
Score = 38.9 bits (89), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL-GSTDRIVVISGTPDETQAA 528
+++++ N +G++ G G + ++ +SG +++ + L ST+RIV + GTPD +AA
Sbjct: 137 IKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERIVEVQGTPDGIKAA 195
>gi|396578134|ref|NP_001257528.1| insulin-like growth factor 2 mRNA-binding protein 2 isoform 2
[Rattus norvegicus]
Length = 524
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 18/156 (11%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEG 240
+Q+ VS + VGA+IGK G I+ L AGA I + A P+ ER++ +T
Sbjct: 351 EQETVS--LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP-- 406
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTII 300
PE+++ KA +F +L E F+ + + + A + V S+ G ++GKGG +
Sbjct: 407 PEAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTV 457
Query: 301 SEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
+E++ +T + + DQ EN+ V V+I G F
Sbjct: 458 NELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 490
>gi|296491333|tpg|DAA33396.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 2
[Bos taurus]
Length = 556
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 42.4 bits (98), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 331 ----VEACANAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPPHQFGPFPHHHSYPEQEI 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 39/217 (17%)
Query: 179 ARTQQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV------GATMPECDERL 232
++ +Q + RIL VGA+IGK G I+ + + + + + GA E+
Sbjct: 187 SQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAA-----EKP 241
Query: 233 ITVTASEGPESRYSPAQKAVVLVFSRLIEGTS---EKGLDFSSNKGLLVNARLVVASNQV 289
+T+ A+ PE S A + ++ + + + T E L ++ GL V
Sbjct: 242 VTIHAT--PEGT-SEACRMILEIMQKEADETKLAEEIPLKILAHNGL------------V 286
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349
G L+GK G + ++ TGT I I S Q L I +R + + G +A + +L
Sbjct: 287 GRLIGKEGRNLKKIEHETGTKITISSLQDL-SIYNPERTITVKGTVEACANAEIEIMKKL 345
Query: 350 RDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFG 386
R+ + L +V T + +S L P FG
Sbjct: 346 REAFENDML---------AVNTHSGYFSSLYPPHQFG 373
>gi|300795407|ref|NP_001179433.1| insulin-like growth factor 2 mRNA-binding protein 2 [Bos taurus]
gi|296491332|tpg|DAA33395.1| TPA: insulin-like growth factor 2 mRNA binding protein 2 isoform 1
[Bos taurus]
Length = 599
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|41053065|dbj|BAD08009.1| putative KH domain protein [Oryza sativa Japonica Group]
Length = 458
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 188 FRILCSNDKVGAVIGKGGTIIRALQSEAGAFISV-----------------GATMPECDE 230
FR++ + DKVG +IG+ G I+ L + A + V + +
Sbjct: 99 FRLVVATDKVGGLIGRRGDTIKRLCEDTRARVRVLEAAAAAAANRIVDSDSNDFIAKVTF 158
Query: 231 RLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLD-FSSNKGLLVNARLVVASNQV 289
++ ++A+E ++ PA A + +F + + D S + +A+L+V S Q
Sbjct: 159 EMVLISATEESQAELPPAMDAAIKIFMHINDIEKINCDDTLSGSAPEKCSAKLLVPSAQA 218
Query: 290 GCLLGKGGTIISEMRKVTGTSIRIISD-QLLKCISENDRVVQISGEFSKVKDAVYNVTGR 348
L+GK G I +++ TG +++II +LL ++R+V I G KV A+ +V G
Sbjct: 219 THLIGKQGVRIKSIQETTGATVKIIDKVELLSYDVVDERIVDIHGAPLKVLHALKSVLGV 278
Query: 349 LR 350
LR
Sbjct: 279 LR 280
>gi|197101075|ref|NP_001125573.1| insulin-like growth factor 2 mRNA-binding protein 2 [Pongo abelii]
gi|75041981|sp|Q5RB68.1|IF2B2_PONAB RecName: Full=Insulin-like growth factor 2 mRNA-binding protein 2;
Short=IGF2 mRNA-binding protein 2; Short=IMP-2; AltName:
Full=IGF-II mRNA-binding protein 2; AltName: Full=VICKZ
family member 2
gi|55728499|emb|CAH90992.1| hypothetical protein [Pongo abelii]
Length = 556
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 331 ----VEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEI 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
>gi|315055291|ref|XP_003177020.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
gi|311338866|gb|EFQ98068.1| hypothetical protein MGYG_01105 [Arthroderma gypseum CBS 118893]
Length = 367
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 9/175 (5%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPE 242
Q ++ R + S+ + G +IGK G + L+ E G V + +R++TVT GP
Sbjct: 45 QSMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKVVQGVHDRVLTVT---GPL 101
Query: 243 SRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISE 302
S KA +V L+EG + G+ + RL+++ NQ+G ++G+ G I
Sbjct: 102 QGTS---KAYSIVAKSLLEGAPQMGMGGVVQNNGTHSVRLLISHNQMGTIIGRQGLKIKY 158
Query: 303 MRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357
++ +G +R+++ + + S +R+V++ G ++ A++ + L D+ GT
Sbjct: 159 IQDASG--VRMVAQKEMLPQS-TERIVEVQGTPEGIEKAIWEIGKCLIDDWQRGT 210
>gi|194762728|ref|XP_001963486.1| GF20264 [Drosophila ananassae]
gi|190629145|gb|EDV44562.1| GF20264 [Drosophila ananassae]
Length = 590
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 18/164 (10%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG---ATMP--ECDERLITVTAS 238
QE +F + N+ VGA+IG G+ IR++ + A + + A P + ER +T+ +
Sbjct: 302 QETTF-LYIPNNAVGAIIGTKGSHIRSIMRFSNASLKIAPLDADKPLDQQTERKVTIVGT 360
Query: 239 EGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGT 298
PE ++ KA ++F ++ E G D + + L+VAS+QVG ++GKGG
Sbjct: 361 --PEGQW----KAQYMIFEKMREEGFMCGTD-----DVRLTVELLVASSQVGRIIGKGGQ 409
Query: 299 IISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDA 341
+ E+++VTG+ I++ L ++ V I G F V+ A
Sbjct: 410 NVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGPFYSVQSA 453
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 89/178 (50%), Gaps = 25/178 (14%)
Query: 182 QQQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFI------SVGATMPECDERLITV 235
+Q + RIL ++ VGA+IG+ G+ IR + ++ A + +VG+ E+ IT+
Sbjct: 81 RQADFPLRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVGSV-----EKSITI 135
Query: 236 TASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGK 295
+ PE+ + + R++E ++ L S+NKG + +++ +N +G ++GK
Sbjct: 136 YGN--PENCTNACK--------RILEVMQQEAL--STNKGEIC-LKILAHNNLIGRIIGK 182
Query: 296 GGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353
G I + + T T I + S + + +R++ + G + A ++ +LR ++
Sbjct: 183 SGNTIKRIMQDTDTKITVSSINDINSFNL-ERIITVKGLIENMSRAENQISTKLRQSY 239
>gi|332215027|ref|XP_003256638.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 1 [Nomascus leucogenys]
Length = 599
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 426 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 482
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 483 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 533
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 534 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 565
>gi|332215031|ref|XP_003256640.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 2
isoform 3 [Nomascus leucogenys]
Length = 556
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 183 QQEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVG-ATMPECDERLITVTASEGP 241
+QE+ + VGA+IGK G I+ L AGA I + A P+ ER++ +T P
Sbjct: 383 EQEI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGP--P 439
Query: 242 ESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIIS 301
E+++ KA +F +L E F+ + + + A + V S+ G ++GKGG ++
Sbjct: 440 EAQF----KAQGRIFGKLKEENF-----FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVN 490
Query: 302 EMRKVTGTSIRIISDQLLKCISENDRV-VQISGEF 335
E++ +T + + DQ EN+ V V+I G F
Sbjct: 491 ELQNLTSAEVIVPRDQ---TPDENEEVIVRIIGHF 522
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 33/195 (16%)
Query: 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMP---ECDERLITVTASEG 240
+E+ +IL N VG +IGK G ++ ++ E G I++ + ER ITV +
Sbjct: 273 EEIPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGT-- 330
Query: 241 PESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSNKGLLVN--------------------- 279
A + + +L E L +++ G +
Sbjct: 331 ----VEACASAEIEIMKKLREAFENDMLAVNTHSGYFSSLYPHHQFGPFPHHHSYPEQEI 386
Query: 280 ARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVK 339
L + + VG ++GK G I ++ + G SI+I + ++R+V I+G
Sbjct: 387 VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDV---SERMVIITGPPEAQF 443
Query: 340 DAVYNVTGRLRDNHF 354
A + G+L++ +F
Sbjct: 444 KAQGRIFGKLKEENF 458
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,978,009,629
Number of Sequences: 23463169
Number of extensions: 331066848
Number of successful extensions: 715997
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 1344
Number of HSP's that attempted gapping in prelim test: 696938
Number of HSP's gapped (non-prelim): 14633
length of query: 541
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 393
effective length of database: 8,886,646,355
effective search space: 3492452017515
effective search space used: 3492452017515
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)