Query 009173
Match_columns 541
No_of_seqs 278 out of 1847
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:28:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009173.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009173hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3krm_A Insulin-like growth fac 99.9 8.3E-26 2.8E-30 210.8 13.7 154 186-352 3-157 (163)
2 2jzx_A Poly(RC)-binding protei 99.9 5.6E-26 1.9E-30 211.3 10.8 156 184-351 3-159 (160)
3 2anr_A Neuro-oncological ventr 99.9 1.9E-25 6.4E-30 211.4 11.3 161 184-352 4-176 (178)
4 3krm_A Insulin-like growth fac 99.9 2.2E-24 7.4E-29 201.2 15.1 152 278-538 3-156 (163)
5 2jvz_A KH type-splicing, FAR u 99.9 2.6E-24 8.8E-29 200.5 14.6 159 278-538 2-160 (164)
6 1j4w_A FUSE binding protein; s 99.9 1.3E-24 4.5E-29 205.0 12.6 170 277-536 2-174 (174)
7 2anr_A Neuro-oncological ventr 99.9 1.6E-24 5.6E-29 204.9 12.7 170 276-540 4-177 (178)
8 1j4w_A FUSE binding protein; s 99.9 1.8E-24 6E-29 204.1 11.7 158 185-349 2-174 (174)
9 2jzx_A Poly(RC)-binding protei 99.9 3.6E-24 1.2E-28 199.1 11.9 156 276-538 3-159 (160)
10 2jvz_A KH type-splicing, FAR u 99.9 8.2E-24 2.8E-28 197.1 11.6 155 186-351 2-160 (164)
11 3n89_A Defective in GERM LINE 99.8 1.3E-20 4.3E-25 195.9 15.5 220 183-536 27-259 (376)
12 2qnd_A FMR1 protein; KH domain 99.7 4.7E-18 1.6E-22 155.6 11.9 134 277-538 3-142 (144)
13 2qnd_A FMR1 protein; KH domain 99.7 5.3E-18 1.8E-22 155.3 9.5 137 185-351 3-142 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.6 8.2E-16 2.8E-20 149.8 9.6 147 186-351 34-191 (219)
15 2e3u_A PH-DIM2P, hypothetical 99.6 1.3E-15 4.5E-20 148.3 10.9 143 277-538 33-191 (219)
16 1wvn_A Poly(RC)-binding protei 99.6 1.2E-15 4.3E-20 126.1 7.3 73 468-540 5-77 (82)
17 2p2r_A Poly(RC)-binding protei 99.6 2E-15 6.8E-20 123.1 7.0 72 468-539 4-75 (76)
18 1zzk_A Heterogeneous nuclear r 99.6 4.3E-15 1.5E-19 122.9 9.1 71 468-538 6-76 (82)
19 1x4n_A FAR upstream element bi 99.5 1.6E-14 5.6E-19 122.1 8.5 73 468-540 14-86 (92)
20 1dtj_A RNA-binding neurooncolo 99.5 1.5E-14 5.1E-19 117.7 7.1 70 469-538 3-75 (76)
21 1j5k_A Heterogeneous nuclear r 99.5 9.9E-15 3.4E-19 122.6 6.1 71 468-538 13-83 (89)
22 2axy_A Poly(RC)-binding protei 99.5 1.7E-14 5.9E-19 116.7 6.7 69 468-538 4-72 (73)
23 1tua_A Hypothetical protein AP 99.5 6.5E-14 2.2E-18 133.3 10.1 140 279-537 5-159 (191)
24 2opv_A KHSRP protein; KH domai 99.5 1.2E-13 4.2E-18 114.9 9.9 69 469-537 14-84 (85)
25 1tua_A Hypothetical protein AP 99.5 6E-14 2.1E-18 133.5 8.4 145 187-350 5-159 (191)
26 1ec6_A RNA-binding protein NOV 99.5 3.8E-14 1.3E-18 118.5 6.2 70 469-538 3-75 (87)
27 1x4m_A FAR upstream element bi 99.5 9.2E-14 3.2E-18 117.9 7.4 73 467-539 13-87 (94)
28 2hh3_A KH-type splicing regula 99.4 8.7E-14 3E-18 120.6 7.0 70 469-538 11-80 (106)
29 2hh2_A KH-type splicing regula 99.4 9.4E-14 3.2E-18 120.6 7.2 71 469-539 7-80 (107)
30 2axy_A Poly(RC)-binding protei 99.4 9.7E-14 3.3E-18 112.2 6.2 70 276-351 3-72 (73)
31 2dgr_A Ring finger and KH doma 99.4 8.4E-14 2.9E-18 115.4 5.5 68 468-538 9-76 (83)
32 1dtj_A RNA-binding neurooncolo 99.4 2.4E-13 8.2E-18 110.5 6.5 71 278-351 3-75 (76)
33 1wvn_A Poly(RC)-binding protei 99.4 3.2E-13 1.1E-17 111.6 7.1 74 275-352 3-76 (82)
34 1zzk_A Heterogeneous nuclear r 99.4 5.3E-13 1.8E-17 110.3 8.1 74 275-352 4-77 (82)
35 2p2r_A Poly(RC)-binding protei 99.4 2.6E-13 9E-18 110.4 6.0 72 276-351 3-74 (76)
36 1we8_A Tudor and KH domain con 99.4 6.3E-13 2.2E-17 114.8 7.4 70 469-538 15-86 (104)
37 1ec6_A RNA-binding protein NOV 99.4 5.4E-13 1.8E-17 111.5 5.6 72 278-352 3-76 (87)
38 2hh2_A KH-type splicing regula 99.4 1E-12 3.5E-17 114.1 7.5 73 279-352 8-80 (107)
39 2dgr_A Ring finger and KH doma 99.3 6.3E-13 2.1E-17 110.1 5.4 69 275-350 7-75 (83)
40 1x4n_A FAR upstream element bi 99.3 1.7E-12 5.8E-17 109.6 7.3 74 275-352 12-85 (92)
41 1j5k_A Heterogeneous nuclear r 99.3 1E-12 3.5E-17 110.3 5.9 75 274-352 10-84 (89)
42 2opv_A KHSRP protein; KH domai 99.3 2.7E-12 9.4E-17 106.7 8.4 74 276-351 12-85 (85)
43 1x4m_A FAR upstream element bi 99.3 1.8E-12 6.3E-17 109.9 6.3 76 275-352 12-87 (94)
44 1vig_A Vigilin; RNA-binding pr 99.3 2.4E-12 8.3E-17 103.5 5.9 67 468-536 4-70 (71)
45 2cte_A Vigilin; K homology typ 99.3 3.4E-12 1.2E-16 108.2 6.4 70 467-538 15-84 (94)
46 2ctl_A Vigilin; K homology typ 99.3 7E-12 2.4E-16 106.9 7.9 70 468-537 16-86 (97)
47 2hh3_A KH-type splicing regula 99.2 5.9E-12 2E-16 109.1 6.0 71 278-352 11-81 (106)
48 1we8_A Tudor and KH domain con 99.2 8.2E-12 2.8E-16 107.8 6.7 76 275-352 12-87 (104)
49 2ctm_A Vigilin; K homology typ 99.2 1.2E-11 4E-16 105.1 7.2 70 468-538 16-85 (95)
50 1vig_A Vigilin; RNA-binding pr 99.2 1.4E-11 4.9E-16 98.9 5.9 67 277-349 4-70 (71)
51 2ctl_A Vigilin; K homology typ 99.2 1.7E-11 5.9E-16 104.5 6.6 72 277-351 16-87 (97)
52 2ctk_A Vigilin; K homology typ 99.2 2.3E-11 7.8E-16 105.0 6.4 68 469-538 17-84 (104)
53 2ctm_A Vigilin; K homology typ 99.2 4E-11 1.4E-15 101.8 6.6 75 274-353 13-87 (95)
54 2cte_A Vigilin; K homology typ 99.1 2.7E-11 9.3E-16 102.6 5.3 72 275-352 14-85 (94)
55 3n89_A Defective in GERM LINE 99.1 1.2E-10 3.9E-15 121.3 9.3 76 274-349 26-104 (376)
56 2ctk_A Vigilin; K homology typ 99.1 1.3E-10 4.6E-15 100.2 5.6 70 277-352 16-85 (104)
57 2ctj_A Vigilin; K homology typ 99.0 2E-10 7E-15 97.4 6.1 70 467-538 15-85 (95)
58 2ctf_A Vigilin; K homology typ 99.0 3.7E-10 1.2E-14 97.1 7.3 65 469-538 27-92 (102)
59 2ctj_A Vigilin; K homology typ 98.9 9.8E-10 3.4E-14 93.2 5.4 73 274-352 13-86 (95)
60 2cpq_A FragIle X mental retard 98.9 1.8E-09 6E-14 90.5 4.9 63 468-535 14-78 (91)
61 2ctf_A Vigilin; K homology typ 98.8 4.8E-09 1.6E-13 90.1 6.8 67 277-352 26-93 (102)
62 2cpq_A FragIle X mental retard 98.7 2E-08 6.9E-13 84.1 5.7 67 275-350 12-80 (91)
63 1k1g_A SF1-BO isoform; splicin 98.5 1.6E-07 5.5E-12 84.1 7.6 73 466-538 4-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.4 6.3E-07 2.1E-11 78.8 8.8 70 469-538 12-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.3 1.1E-06 3.8E-11 78.6 7.3 76 276-351 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.2 4E-06 1.4E-10 73.7 8.2 76 276-351 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.1 2.2E-06 7.5E-11 77.3 4.5 73 278-350 2-100 (140)
68 2bl5_A MGC83862 protein, quaki 98.0 5.2E-06 1.8E-10 74.9 4.6 39 186-224 2-46 (140)
69 3v69_A Protein filia; RNA-bind 97.7 8.6E-05 2.9E-09 65.9 7.4 67 470-537 57-123 (140)
70 3u1k_A Polyribonucleotide nucl 97.7 4.3E-05 1.5E-09 84.8 6.8 64 276-349 565-629 (630)
71 3u1k_A Polyribonucleotide nucl 97.6 2.9E-05 9.8E-10 86.3 3.6 62 469-536 567-629 (630)
72 2cxc_A NUSA; transcription ter 97.4 6.9E-05 2.4E-09 67.9 2.9 104 186-314 36-139 (144)
73 3v69_A Protein filia; RNA-bind 97.2 0.0005 1.7E-08 61.0 6.4 68 279-351 57-124 (140)
74 4aid_A Polyribonucleotide nucl 96.9 0.00052 1.8E-08 77.1 4.3 66 277-352 569-635 (726)
75 4aid_A Polyribonucleotide nucl 96.5 0.00046 1.6E-08 77.5 0.7 62 470-537 571-633 (726)
76 2cxc_A NUSA; transcription ter 96.5 0.00064 2.2E-08 61.5 1.3 36 279-314 37-72 (144)
77 1k0r_A NUSA; two component arr 95.4 0.02 7E-07 59.1 6.6 96 195-316 249-345 (366)
78 2asb_A Transcription elongatio 95.0 0.024 8.3E-07 55.6 5.4 95 195-315 126-221 (251)
79 2asb_A Transcription elongatio 93.7 0.061 2.1E-06 52.8 5.0 37 469-505 184-220 (251)
80 1e3p_A Guanosine pentaphosphat 93.1 0.019 6.4E-07 65.0 0.4 61 279-349 599-660 (757)
81 3cdi_A Polynucleotide phosphor 92.9 0.034 1.2E-06 62.7 2.1 65 277-351 559-624 (723)
82 1k0r_A NUSA; two component arr 92.5 0.12 4E-06 53.5 5.2 37 469-505 307-343 (366)
83 3cdi_A Polynucleotide phosphor 91.9 0.029 1E-06 63.2 0.0 61 470-536 561-622 (723)
84 1hh2_P NUSA, N utilization sub 91.9 0.17 5.6E-06 52.1 5.5 95 195-315 245-340 (344)
85 1e3p_A Guanosine pentaphosphat 90.6 0.013 4.5E-07 66.3 -4.5 59 472-536 601-660 (757)
86 2pt7_G HP1451, hypothetical pr 71.1 2.1 7.1E-05 38.8 2.6 30 187-216 34-63 (152)
87 1hh2_P NUSA, N utilization sub 68.8 2.4 8.2E-05 43.4 2.8 37 469-505 303-339 (344)
88 1wh9_A 40S ribosomal protein S 65.5 2.5 8.5E-05 34.9 1.7 29 187-215 36-64 (92)
89 2pt7_G HP1451, hypothetical pr 54.8 5.8 0.0002 35.8 2.3 65 279-352 34-99 (152)
90 1wh9_A 40S ribosomal protein S 51.7 4.5 0.00015 33.4 1.0 27 470-496 36-62 (92)
91 2ba0_A Archeal exosome RNA bin 36.7 46 0.0016 31.7 5.7 58 471-534 138-195 (229)
92 3gku_A Probable RNA-binding pr 35.5 11 0.00039 36.1 1.1 34 187-220 93-126 (225)
93 3j20_C 30S ribosomal protein S 33.5 14 0.00049 35.0 1.5 29 187-215 41-69 (210)
94 3u5c_D RP13, YS3, 40S ribosoma 32.8 15 0.0005 35.6 1.4 29 187-215 45-73 (240)
95 2xzm_C KH domain containing pr 31.3 20 0.00067 34.8 2.0 29 187-215 48-76 (243)
96 3iz6_B 40S ribosomal protein S 29.7 15 0.00052 35.3 0.9 29 187-215 45-73 (227)
97 3iev_A GTP-binding protein ERA 29.4 25 0.00084 34.8 2.5 38 185-222 239-285 (308)
98 2z0s_A Probable exosome comple 28.2 96 0.0033 29.5 6.4 59 471-535 150-209 (235)
99 3r8n_C 30S ribosomal protein S 26.4 16 0.00054 34.6 0.4 34 188-221 63-100 (206)
100 2zkq_c 40S ribosomal protein S 25.0 18 0.00063 35.0 0.6 29 187-215 45-73 (243)
101 3u5c_D RP13, YS3, 40S ribosoma 24.5 24 0.00081 34.2 1.2 28 470-497 45-72 (240)
102 2ba0_A Archeal exosome RNA bin 24.1 94 0.0032 29.5 5.4 56 281-346 139-194 (229)
103 3i1m_C 30S ribosomal protein S 23.9 18 0.00063 34.8 0.3 27 188-214 64-90 (233)
104 3j20_C 30S ribosomal protein S 23.5 22 0.00077 33.7 0.8 35 471-505 42-83 (210)
105 3iev_A GTP-binding protein ERA 23.4 30 0.001 34.1 1.8 37 469-505 240-285 (308)
106 2vqe_C 30S ribosomal protein S 23.1 27 0.00092 33.8 1.3 28 188-215 64-91 (239)
107 2xzm_C KH domain containing pr 21.9 30 0.001 33.5 1.4 28 470-497 48-75 (243)
108 3gku_A Probable RNA-binding pr 21.3 26 0.00088 33.6 0.8 31 279-309 93-123 (225)
109 3bbn_C Ribosomal protein S3; s 20.9 24 0.00081 33.7 0.4 28 188-215 72-99 (218)
110 3iz6_B 40S ribosomal protein S 20.8 25 0.00085 33.8 0.5 28 470-497 45-72 (227)
No 1
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=8.3e-26 Score=210.80 Aligned_cols=154 Identities=23% Similarity=0.401 Sum_probs=130.0
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCC-CCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 009173 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT-MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (541)
Q Consensus 186 ~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~-~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~ 264 (541)
-+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+++. +.+|..+|+..+.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~------v~~A~~~I~~~~~e~~~ 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA------QFKAQGRIYGKLKEENF 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH------HHHHHHHHHHHHHHTTS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHhcccc
Confidence 488999999999999999999999999999999999976 57889999999997653 77787777776655421
Q ss_pred ccCCCCCCCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHH
Q 009173 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYN 344 (541)
Q Consensus 265 ~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~l 344 (541)
+.+......+.+|.||.+++|+||||+|++|++|++.|||+|.|..+..|. ...++.|+|+|++++|++|+.+
T Consensus 77 -----~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~--~~~~~~v~I~G~~~~v~~A~~~ 149 (163)
T 3krm_A 77 -----FGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPD--ENDQVIVKIIGHFYASQMAQRK 149 (163)
T ss_dssp -----SCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCC--TTSEEEEEEEECHHHHHHHHHH
T ss_pred -----cccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCC--CCCceEEEEEeCHHHHHHHHHH
Confidence 112234567889999999999999999999999999999999998766665 2334489999999999999999
Q ss_pred HHHHhhcc
Q 009173 345 VTGRLRDN 352 (541)
Q Consensus 345 I~~~l~e~ 352 (541)
|.+++++.
T Consensus 150 I~~~i~~~ 157 (163)
T 3krm_A 150 IRDILAQV 157 (163)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999753
No 2
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=5.6e-26 Score=211.33 Aligned_cols=156 Identities=29% Similarity=0.520 Sum_probs=129.4
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 009173 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (541)
Q Consensus 184 ~~~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~ 263 (541)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++.+|.|+|+|+.+. +.+|..++...+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~------v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA------IFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH------HHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH------HHHHHHHHHHHHHhhc
Confidence 35899999999999999999999999999999999999873 578999999997542 6777777776555432
Q ss_pred cccCCCC-CCCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHH
Q 009173 264 SEKGLDF-SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAV 342 (541)
Q Consensus 264 ~~~g~~~-~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~ 342 (541)
. ..... .......++.++.||.+++|+||||+|++|++|+++|||+|+|.++..|. ++++.|+|+|++++|++|+
T Consensus 75 ~-~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~---~~~~~v~I~G~~~~v~~A~ 150 (160)
T 2jzx_A 75 S-SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECV 150 (160)
T ss_dssp T-SCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTT---CCEEEEEEEECHHHHHHHH
T ss_pred c-ccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCC---CCceEEEEEcCHHHHHHHH
Confidence 1 11110 01123457899999999999999999999999999999999998766665 6789999999999999999
Q ss_pred HHHHHHhhc
Q 009173 343 YNVTGRLRD 351 (541)
Q Consensus 343 ~lI~~~l~e 351 (541)
.+|.+++.|
T Consensus 151 ~~I~~~i~e 159 (160)
T 2jzx_A 151 KQICVVMLE 159 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999865
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=1.9e-25 Score=211.42 Aligned_cols=161 Identities=22% Similarity=0.401 Sum_probs=127.8
Q ss_pred CceEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCC---CCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHh
Q 009173 184 QEVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT---MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLI 260 (541)
Q Consensus 184 ~~~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~---~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~ 260 (541)
.+++++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+.++ +.+|..+|.+.+.
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~------v~~A~~~I~~~~~ 77 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA------LNAVHGFIAEKIR 77 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH------HHHHHHHHHHHHT
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH------HHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999864 46789999999997553 6777777666554
Q ss_pred hcccccC-------CCC--CCCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEE
Q 009173 261 EGTSEKG-------LDF--SSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQI 331 (541)
Q Consensus 261 e~~~~~g-------~~~--~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtI 331 (541)
+...... ..+ ........+.+|.||.+++|+||||+|++|++|+++|||+|+|..+. .+..++++.|+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~~v~I 155 (178)
T 2anr_A 78 EMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQNRVVTV 155 (178)
T ss_dssp CCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEEE
T ss_pred ccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC--CCCCCCceEEEE
Confidence 3221000 000 01123457889999999999999999999999999999999998442 223367899999
Q ss_pred EcCHHHHHHHHHHHHHHhhcc
Q 009173 332 SGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 332 tGt~e~V~~A~~lI~~~l~e~ 352 (541)
+|++++|++|+.+|.++++++
T Consensus 156 ~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 156 SGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp ESSHHHHHHHHHHHHHHHHSC
T ss_pred EcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999865
No 4
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=201.17 Aligned_cols=152 Identities=24% Similarity=0.386 Sum_probs=127.7
Q ss_pred eEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccccCCC
Q 009173 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357 (541)
Q Consensus 278 vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~~~~~ 357 (541)
.+++|+||.+++|.||||+|++|++|+++|||+|+|..+..|+ +.+|.|+|+|+++++.+|+.+|.+++.+..+.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~-- 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPD---SKVRMVIITGPPEAQFKAQGRIYGKLKEENFF-- 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTT---CSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS--
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhccccc--
Confidence 4789999999999999999999999999999999998654554 78999999999999999999999998753100
Q ss_pred cccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCccccccccccccCCCC
Q 009173 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGS 437 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~~~g~ 437 (541)
.| .
T Consensus 78 --------------------------------------------------------------~~-------------~-- 80 (163)
T 3krm_A 78 --------------------------------------------------------------GP-------------K-- 80 (163)
T ss_dssp --------------------------------------------------------------CS-------------S--
T ss_pred --------------------------------------------------------------cc-------------c--
Confidence 00 0
Q ss_pred CCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCC-CCCCC-ccE
Q 009173 438 SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP-RLGST-DRI 515 (541)
Q Consensus 438 ~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p-~~~s~-~Ri 515 (541)
.. ...+.+|.||.+++|+|||++|++|++|++.|||+|.|.+. .+++. ++.
T Consensus 81 ---------------~~------------~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~ 133 (163)
T 3krm_A 81 ---------------EE------------VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVI 133 (163)
T ss_dssp ---------------CC------------CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEE
T ss_pred ---------------cC------------CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceE
Confidence 00 01467999999999999999999999999999999999853 23343 458
Q ss_pred EEEEeCHHHHHHHHHHHHHHHhc
Q 009173 516 VVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 516 ItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
|+|+|++++|++|+.+|+++|..
T Consensus 134 v~I~G~~~~v~~A~~~I~~~i~~ 156 (163)
T 3krm_A 134 VKIIGHFYASQMAQRKIRDILAQ 156 (163)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=2.6e-24 Score=200.51 Aligned_cols=159 Identities=20% Similarity=0.398 Sum_probs=128.3
Q ss_pred eEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccccCCC
Q 009173 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSGT 357 (541)
Q Consensus 278 vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~~~~~ 357 (541)
++.+|+||.+++|+||||+|++|++|+++|||+|++..+. + +....++.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~-~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~-- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-S-QNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG-- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-T-SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC--
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-C-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC--
Confidence 5789999999999999999999999999999999997542 1 12367899999999999999999999998643100
Q ss_pred cccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCccccccccccccCCCC
Q 009173 358 LNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRGS 437 (541)
Q Consensus 358 ~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~~~g~ 437 (541)
+|. +. ..|+++
T Consensus 78 -----------------~~~-------------------------------------------~~-------~~~~~~-- 88 (164)
T 2jvz_A 78 -----------------GFG-------------------------------------------DR-------NEYGSR-- 88 (164)
T ss_dssp -----------------CCS-------------------------------------------SC-------SSCTTS--
T ss_pred -----------------CCC-------------------------------------------Cc-------cccCCC--
Confidence 000 00 000000
Q ss_pred CCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEE
Q 009173 438 SDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVV 517 (541)
Q Consensus 438 ~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiIt 517 (541)
. ..+.+|.||.+++|+|||++|++|++|++.|||+|.|.+..+...++.|+
T Consensus 89 ---------------~--------------~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~ 139 (164)
T 2jvz_A 89 ---------------I--------------GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAH 139 (164)
T ss_dssp ---------------C--------------SSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEE
T ss_pred ---------------C--------------CceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEE
Confidence 0 02357899999999999999999999999999999998766666789999
Q ss_pred EEeCHHHHHHHHHHHHHHHhc
Q 009173 518 ISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 518 IsGtpeqV~~Aq~LI~~~I~~ 538 (541)
|+|++++++.|+.+|+++|..
T Consensus 140 I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 140 IMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp EESCHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=1.3e-24 Score=204.98 Aligned_cols=170 Identities=22% Similarity=0.354 Sum_probs=126.0
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccccCC
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~~~~ 356 (541)
..+.+|+||.+++|+||||+|++|++|+++|||+|+|..+ .+ ...+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~-~~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~- 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-DG---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG- 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC-TT---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC---
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC-CC---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC-
Confidence 3578999999999999999999999999999999999742 12 256899999999999999999999999753200
Q ss_pred CcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCccccccccccccCCC
Q 009173 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG 436 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~~~g 436 (541)
. + +.+.+.+ + ++ ++
T Consensus 77 ~------------------~---------~~~~p~~------~-----~~---------------------------~~- 90 (174)
T 1j4w_A 77 N------------------P---------GGPGPGG------R-----GR---------------------------GR- 90 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C------------------C---------CCCCCCC------C-----CC---------------------------CC-
Confidence 0 0 0000000 0 00 00
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCC---CCCCCc
Q 009173 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTD 513 (541)
Q Consensus 437 ~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p---~~~s~~ 513 (541)
....|..+.+ ....+.+|.||.+++|+||||+|++|++|++.|||+|+|.+. ..++.+
T Consensus 91 ---~~~~~~~~~~----------------~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~ 151 (174)
T 1j4w_A 91 ---GQGNWNMGPP----------------GGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNM 151 (174)
T ss_dssp --------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTE
T ss_pred ---CCCccccCCC----------------CCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCc
Confidence 0001211111 012578999999999999999999999999999999999853 234678
Q ss_pred cEEEEEeCHHHHHHHHHHHHHHH
Q 009173 514 RIVVISGTPDETQAAQSLLQAFI 536 (541)
Q Consensus 514 RiItIsGtpeqV~~Aq~LI~~~I 536 (541)
+.|+|+|+++++++|+.||+++|
T Consensus 152 ~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 152 KLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHC
T ss_pred eEEEEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999999875
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.91 E-value=1.6e-24 Score=204.94 Aligned_cols=170 Identities=24% Similarity=0.408 Sum_probs=131.6
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEcc--CcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccc
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS--DQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~--d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~ 353 (541)
..++.+|+||.+++|.||||+|++|++|+++|||+|+|.. +..|+ +.+|.|+|+|+.++|.+|+.+|.+++.+..
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---TTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---SSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---CCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 4678999999999999999999999999999999999984 33454 678999999999999999999999997532
Q ss_pred cCCCcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCcccccccccccc
Q 009173 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVH 433 (541)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~ 433 (541)
.... . .+++.+ ..
T Consensus 81 ~~~~------~---------------~~~~~~--------------------------------------~~-------- 93 (178)
T 2anr_A 81 QNVA------K---------------TEPVSI--------------------------------------LQ-------- 93 (178)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Cccc------c---------------CCcccc--------------------------------------cC--------
Confidence 1000 0 000000 00
Q ss_pred CCCCCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCC--CCC
Q 009173 434 LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR--LGS 511 (541)
Q Consensus 434 ~~g~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~--~~s 511 (541)
+... .. . ....+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. +++
T Consensus 94 ~~~~--------~~-----~------------~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~ 148 (178)
T 2anr_A 94 PQTT--------VN-----P------------DRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINL 148 (178)
T ss_dssp -------------------C------------GGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----C
T ss_pred CccC--------CC-----C------------CCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCC
Confidence 0000 00 0 0125789999999999999999999999999999999998542 345
Q ss_pred CccEEEEEeCHHHHHHHHHHHHHHHhcCC
Q 009173 512 TDRIVVISGTPDETQAAQSLLQAFILTGP 540 (541)
Q Consensus 512 ~~RiItIsGtpeqV~~Aq~LI~~~I~~~~ 540 (541)
.++.|+|+|+++++++|+.+|.++|....
T Consensus 149 ~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 149 QNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 78999999999999999999999998753
No 8
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=1.8e-24 Score=204.10 Aligned_cols=158 Identities=22% Similarity=0.347 Sum_probs=123.9
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 009173 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (541)
Q Consensus 185 ~~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~ 264 (541)
..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+..+++.+|+|+|+|+.+. +.+|+.+|.+.+.+...
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~~~~~~~~ 75 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR------AQHAAEIITDLLRSVQA 75 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH------HHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH------HHHHHHHHHHHHHhccc
Confidence 468899999999999999999999999999999999987667788999999998553 66776666554433211
Q ss_pred cc-C--------C-----CCC-CCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceE
Q 009173 265 EK-G--------L-----DFS-SNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVV 329 (541)
Q Consensus 265 ~~-g--------~-----~~~-~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervV 329 (541)
.. + . ++. .......+.+|.||.+++|+||||+|++|++|+++|||+|+|..+.. .+..++++.|
T Consensus 76 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~~~~~v 154 (174)
T 1j4w_A 76 GNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPP-PNADPNMKLF 154 (174)
T ss_dssp ----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT-TTSCTTEEEE
T ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCC-CCCCCCceEE
Confidence 00 0 0 000 00123468899999999999999999999999999999999985433 2345678999
Q ss_pred EEEcCHHHHHHHHHHHHHHh
Q 009173 330 QISGEFSKVKDAVYNVTGRL 349 (541)
Q Consensus 330 tItGt~e~V~~A~~lI~~~l 349 (541)
+|+|++++|++|+++|.++|
T Consensus 155 ~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 155 TIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEECCHHHHHHHHHHHHHHC
T ss_pred EEECCHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 9
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=3.6e-24 Score=199.10 Aligned_cols=156 Identities=24% Similarity=0.439 Sum_probs=129.6
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccccC
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFS 355 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~~~ 355 (541)
..++.+|+||.+++|.||||+|++|++|+++|||+|+|..+ +..+|.|+|+|+.++|.+|+.+|.+++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~ 76 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEEDISS 76 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccc
Confidence 46789999999999999999999999999999999999743 245799999999999999999999998753210
Q ss_pred CCcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCccccccccccccCC
Q 009173 356 GTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLR 435 (541)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~~~ 435 (541)
. + +.+. ..
T Consensus 77 ~-------------------------------------------------~-----------~~~~------------~~ 84 (160)
T 2jzx_A 77 S-------------------------------------------------M-----------TNST------------AA 84 (160)
T ss_dssp C-------------------------------------------------C-----------CSSS------------CC
T ss_pred c-------------------------------------------------C-----------CCCc------------cC
Confidence 0 0 0000 00
Q ss_pred CCCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeC-CCCCCCcc
Q 009173 436 GSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHE-PRLGSTDR 514 (541)
Q Consensus 436 g~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~-p~~~s~~R 514 (541)
. ....+.++.||.+++|+|||++|++|++|++.|||+|+|.+ +.+++.++
T Consensus 85 ----------~-------------------~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~ 135 (160)
T 2jzx_A 85 ----------S-------------------RPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTER 135 (160)
T ss_dssp ----------C-------------------CCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEE
T ss_pred ----------C-------------------CCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCce
Confidence 0 00157899999999999999999999999999999999984 45677899
Q ss_pred EEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 515 IVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 515 iItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.|+|+|+++++++|+.+|.+++..
T Consensus 136 ~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 136 AITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999998864
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.90 E-value=8.2e-24 Score=197.11 Aligned_cols=155 Identities=21% Similarity=0.332 Sum_probs=123.4
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCC--CCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcc
Q 009173 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGAT--MPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGT 263 (541)
Q Consensus 186 ~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~--~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~ 263 (541)
++++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|+.+. +.+|..+|...+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~------v~~A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK------VQQACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH------HHHHHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH------HHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999754 34678999999997543 6677777766544322
Q ss_pred cccCCCCCCC--CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHH
Q 009173 264 SEKGLDFSSN--KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDA 341 (541)
Q Consensus 264 ~~~g~~~~~~--~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A 341 (541)
..++..... .....+.+|.||.+++|+||||+|++|++|+++|||+|.|..+. + .+.++.|+|+|++++|+.|
T Consensus 76 -~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~-~---~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 -QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-G---TGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp -SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC-T---TSSEEEEEEESCHHHHHHH
T ss_pred -CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC-C---CCCcEEEEEEcCHHHHHHH
Confidence 111111100 11134678999999999999999999999999999999997432 2 2457999999999999999
Q ss_pred HHHHHHHhhc
Q 009173 342 VYNVTGRLRD 351 (541)
Q Consensus 342 ~~lI~~~l~e 351 (541)
+.+|.+++++
T Consensus 151 ~~~I~~~i~~ 160 (164)
T 2jvz_A 151 ARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=1.3e-20 Score=195.94 Aligned_cols=220 Identities=9% Similarity=0.091 Sum_probs=156.1
Q ss_pred CCceEEEEEeccccccceeccCc--hHHHHHHHHhCCeEEecCCC-----CCCCcceEEEecCCCCCCCCCHHHHHHHHH
Q 009173 183 QQEVSFRILCSNDKVGAVIGKGG--TIIRALQSEAGAFISVGATM-----PECDERLITVTASEGPESRYSPAQKAVVLV 255 (541)
Q Consensus 183 ~~~~~~rilvP~~~vG~IIGKgG--~~Ik~Iq~eTGa~I~I~~~~-----~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i 255 (541)
...+++.+-||...++.|||||| ++|++|+++|||+|+|++.. +......|+|+|..++ +.+|..++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en------VE~AR~~I 100 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD------VDRARMLM 100 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH------HHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH------HHHHHHHH
Confidence 45699999999999999999999 99999999999999998754 1234578999998764 66666655
Q ss_pred HHHHhhcccccCCCCCCCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCH
Q 009173 256 FSRLIEGTSEKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEF 335 (541)
Q Consensus 256 ~~~i~e~~~~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~ 335 (541)
.+ + ..+++.+.+|...++. ...+..|.. ++..+++|.++.. |...+.....|+|+|..
T Consensus 101 ~~-l----------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~--~~~~~~~sd~V~IrG~~ 158 (376)
T 3n89_A 101 RR-N----------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDA--PEKNGIVTTYLRITARE 158 (376)
T ss_dssp HH-S----------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEE--C-----CEEEEEEEEEG
T ss_pred Hh-c----------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCc--ccccCCCCCEEEEEcCh
Confidence 43 1 1345666676644332 222345555 6789999998632 11111124579999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCC
Q 009173 336 SKVKDAVYNVTGRLRDNHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSL 415 (541)
Q Consensus 336 e~V~~A~~lI~~~l~e~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~ 415 (541)
.++.+|.+.+..+++...-.. .+
T Consensus 159 ~nv~~akeA~~~Ll~~l~~~e-----------------------------------------~~---------------- 181 (376)
T 3n89_A 159 KNQHELIEAAKRLNEILFRES-----------------------------------------PA---------------- 181 (376)
T ss_dssp GGHHHHHHHHHHHHHHHCC-------------------------------------------CC----------------
T ss_pred hhHHHHHHHHHHHHHHHHhhh-----------------------------------------cc----------------
Confidence 888777766666664210000 00
Q ss_pred CCCCCCccccccccccccCCCCCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCc--chHHH
Q 009173 416 DCPSSPKLWTAQTVTGVHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENG--SNLLR 493 (541)
Q Consensus 416 ~~p~~p~~~~~~~~~g~~~~g~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgG--s~Ik~ 493 (541)
+ ....+.+|.|+..++..|||++| ..|+.
T Consensus 182 --~-----------------------------------------------~~~~s~~v~V~~~~H~~IIGk~G~n~~Ikk 212 (376)
T 3n89_A 182 --P-----------------------------------------------ENNFTLHFTLSTYYVDQVLGSSSTAQLMPV 212 (376)
T ss_dssp --C-----------------------------------------------SSCEEEEEEEEGGGHHHHTCCTTSCCHHHH
T ss_pred --c-----------------------------------------------ccceEEEEEeCHHHHHHhhcCCCcchHHHH
Confidence 0 00257899999999999999999 45699
Q ss_pred HHhHhCCEEEEeCCCC--C--CCccEEEEEeCHHHHHHHHHHHHHHH
Q 009173 494 LRQISGAKVIVHEPRL--G--STDRIVVISGTPDETQAAQSLLQAFI 536 (541)
Q Consensus 494 Irq~SGA~I~I~~p~~--~--s~~RiItIsGtpeqV~~Aq~LI~~~I 536 (541)
|+++|||+|.+++... + .....|+|+|++++|..|+..|++++
T Consensus 213 Ir~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 213 IERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp HHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred HHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 9999999999964321 1 23578999999999999999999865
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.75 E-value=4.7e-18 Score=155.56 Aligned_cols=134 Identities=24% Similarity=0.316 Sum_probs=105.3
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccccCC
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNHFSG 356 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~~~~ 356 (541)
.++.++.||.+.+|.+||++|++|+.|++++|.+|....+ +.+..+...+++++|.+|..+ |. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~-------~~~~~i~~~~~p~~v~~~~~~----l~-~---- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE-------DTCTFHIYGEDQDAVKKARSF----LE-F---- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET-------TTTEEEEEESSHHHHHHHHHH----HC-E----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC-------CchheeeccCCHHHHHHHHHh----hh-c----
Confidence 4678999999999999999999999999999944433222 234555555679999888542 21 0
Q ss_pred CcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCccccccccccccCCC
Q 009173 357 TLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVHLRG 436 (541)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~~~g 436 (541)
T Consensus 67 -------------------------------------------------------------------------------- 66 (144)
T 2qnd_A 67 -------------------------------------------------------------------------------- 66 (144)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEeccCcccceeeCCcchHHHHHhHhCC-EEEEeCCCCC---CC
Q 009173 437 SSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIVPENVIGSVYGENGSNLLRLRQISGA-KVIVHEPRLG---ST 512 (541)
Q Consensus 437 ~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA-~I~I~~p~~~---s~ 512 (541)
...+|.||.+.+|++|||+|.||+.|++.||| +|+|...... .+
T Consensus 67 --------------------------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~ 114 (144)
T 2qnd_A 67 --------------------------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQE 114 (144)
T ss_dssp --------------------------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCC
T ss_pred --------------------------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCcccc
Confidence 12588999999999999999999999999997 9999842211 12
Q ss_pred cc--EEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 513 DR--IVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 513 ~R--iItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
++ .|+|+|++++|+.|+.||++.|.+
T Consensus 115 ~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 115 EGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp TTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred CCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 33 589999999999999999999864
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.73 E-value=5.3e-18 Score=155.26 Aligned_cols=137 Identities=19% Similarity=0.250 Sum_probs=98.9
Q ss_pred ceEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhccc
Q 009173 185 EVSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTS 264 (541)
Q Consensus 185 ~~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~ 264 (541)
.++.+|+||.+.+|++||++|++|++|++++| |++... ...+++.+...++++ ....+..+ .+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~-~~~~~~~i~~~~~p~-------~v~~~~~~----l~~-- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDL-DEDTCTFHIYGEDQD-------AVKKARSF----LEF-- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEE-ETTTTEEEEEESSHH-------HHHHHHHH----HCE--
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEecc-CCCchheeeccCCHH-------HHHHHHHh----hhc--
Confidence 46889999999999999999999999999999 444321 122344443333322 22222111 110
Q ss_pred ccCCCCCCCCCceeEEEEEecccccccccccccchhhhhhcccCe-eEEEccCcccccCCCCCc--eEEEEcCHHHHHHH
Q 009173 265 EKGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGT-SIRIISDQLLKCISENDR--VVQISGEFSKVKDA 341 (541)
Q Consensus 265 ~~g~~~~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA-~I~I~~d~~P~~~~s~er--vVtItGt~e~V~~A 341 (541)
...++.||.+++|++|||+|.+|+.|++.||| +|+|..+.-+.. ..+++ .|+|+|++++|+.|
T Consensus 67 -------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-~~~~~~~~vtI~G~~~~v~~A 132 (144)
T 2qnd_A 67 -------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-PQEEGMVPFVFVGTKDSIANA 132 (144)
T ss_dssp -------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-CCCTTEEEEEEEEEHHHHHHH
T ss_pred -------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-cccCCeeEEEEEeCHHHHHHH
Confidence 13789999999999999999999999999997 999984321111 12343 48999999999999
Q ss_pred HHHHHHHhhc
Q 009173 342 VYNVTGRLRD 351 (541)
Q Consensus 342 ~~lI~~~l~e 351 (541)
+.+|.++|.+
T Consensus 133 k~li~~~l~~ 142 (144)
T 2qnd_A 133 TVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999999963
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.62 E-value=8.2e-16 Score=149.76 Aligned_cols=147 Identities=15% Similarity=0.200 Sum_probs=106.2
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 009173 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265 (541)
Q Consensus 186 ~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~ 265 (541)
-..++.||.+.+|.|||++|++|+.|+++|||+|++.. +++.|+|.++.... ....+++|...|.+.......+
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~-d~~~i~kA~~~I~~i~rg~~~e 107 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETE-DPLAVWKARDIVLAIGRGFSPE 107 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCC-SHHHHHHHHHHHHHHHTTCCHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCC-CHHHHHHHHHHHHHHhccCCcc
Confidence 36689999999999999999999999999999999973 46789999864211 1124677776665533111111
Q ss_pred cCCCCCCCCCceeEEEEEec-----------ccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcC
Q 009173 266 KGLDFSSNKGLLVNARLVVA-----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE 334 (541)
Q Consensus 266 ~g~~~~~~~~~~vt~~l~VP-----------~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt 334 (541)
.+... . .+....-.+.|+ ...+|+||||+|++|+.|++.|||+|.|. ++.|.|.|+
T Consensus 108 ~g~~l-l-~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~-----------~~~v~i~G~ 174 (219)
T 2e3u_A 108 RAFRL-L-NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY-----------GKTVAIIGN 174 (219)
T ss_dssp HHGGG-G-STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-----------TTEEEEEEC
T ss_pred cccee-c-cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-----------CeEEEEEeC
Confidence 00000 0 011111123333 23689999999999999999999999994 357999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 009173 335 FSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 335 ~e~V~~A~~lI~~~l~e 351 (541)
+++++.|+.+|.+++..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999964
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.61 E-value=1.3e-15 Score=148.33 Aligned_cols=143 Identities=23% Similarity=0.213 Sum_probs=109.4
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcC-----HHHHHHHHHHHHHHhhc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-----FSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt-----~e~V~~A~~lI~~~l~e 351 (541)
.....+.||.+.+|.|||++|++|+.|+++|||+|+|.. .++.|+|.|+ ++++++|..+|..+.+.
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~---------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS---------ETGEVWITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT---------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc---------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 346699999999999999999999999999999999952 3567888886 69999999999998852
Q ss_pred cccCCCcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCcccccccccc
Q 009173 352 NHFSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTG 431 (541)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g 431 (541)
..... +.. +.
T Consensus 104 ~~~e~------------------------------------------------g~~---------------ll------- 113 (219)
T 2e3u_A 104 FSPER------------------------------------------------AFR---------------LL------- 113 (219)
T ss_dssp CCHHH------------------------------------------------HGG---------------GG-------
T ss_pred CCccc------------------------------------------------cce---------------ec-------
Confidence 11000 000 00
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEE-----------eccCcccceeeCCcchHHHHHhHhCC
Q 009173 432 VHLRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEII-----------VPENVIGSVYGENGSNLLRLRQISGA 500 (541)
Q Consensus 432 ~~~~g~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~-----------IP~~~vG~IIGkgGs~Ik~Irq~SGA 500 (541)
. .+. ....+. .+...+|+||||+|++|+.|++.|||
T Consensus 114 ---~--dd~----------------------------~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~ 160 (219)
T 2e3u_A 114 ---N--EGE----------------------------YLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGA 160 (219)
T ss_dssp ---S--TTC----------------------------EEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred ---c--CCc----------------------------cceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCc
Confidence 0 000 000111 12346899999999999999999999
Q ss_pred EEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 501 KVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 501 ~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
+|.|++ +.|+|.|++++++.|+.+|.++|..
T Consensus 161 ~I~v~~-------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 161 SVSVYG-------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp EEEEET-------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEECC-------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 999964 6799999999999999999999943
No 16
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.59 E-value=1.2e-15 Score=126.14 Aligned_cols=73 Identities=36% Similarity=0.599 Sum_probs=66.9
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhcCC
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~~~ 540 (541)
..+.+|.||.+++|+|||+||++|++|++.|||+|+|.++.+++.+|.|+|+|+++++++|+.+|++++.+.+
T Consensus 5 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 5 QTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred cEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 4789999999999999999999999999999999999987778889999999999999999999999987643
No 17
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=123.07 Aligned_cols=72 Identities=33% Similarity=0.599 Sum_probs=67.9
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhcC
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTG 539 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~~ 539 (541)
..+.+|.||.+++|+|||+||++|++|++.|||+|+|.++.+++.+|.|+|+|+++++++|+.||++++.+.
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 368899999999999999999999999999999999998888889999999999999999999999998753
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.58 E-value=4.3e-15 Score=122.91 Aligned_cols=71 Identities=38% Similarity=0.633 Sum_probs=67.1
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|+++.+++.+|.|+|+|+++++++|+.+|++++..
T Consensus 6 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 6 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999877788899999999999999999999999865
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.53 E-value=1.6e-14 Score=122.06 Aligned_cols=73 Identities=30% Similarity=0.537 Sum_probs=68.2
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhcCC
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILTGP 540 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~~~ 540 (541)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+++.+|.|+|+|+++++++|+.||+++|...+
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999977677789999999999999999999999998754
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.52 E-value=1.5e-14 Score=117.74 Aligned_cols=70 Identities=34% Similarity=0.636 Sum_probs=64.0
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p---~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||.+++|+|||+||++|++|++.|||+|+|++. .+++.++.|+|+|+++++++|+.+|++++..
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999853 3577889999999999999999999998754
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.52 E-value=9.9e-15 Score=122.64 Aligned_cols=71 Identities=38% Similarity=0.633 Sum_probs=67.2
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|+++.+++.+|.|+|+|+++++++|+.+|++++..
T Consensus 13 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 13 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999999999999999877788899999999999999999999999865
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1.7e-14 Score=116.67 Aligned_cols=69 Identities=20% Similarity=0.452 Sum_probs=64.5
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
..+.+|.||.+++|+|||+||++|++|++.|||+|+|++. ++.+|.|+|+|+++++++|+.+|.++|.+
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999999999864 56789999999999999999999999875
No 23
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.49 E-value=6.5e-14 Score=133.32 Aligned_cols=140 Identities=18% Similarity=0.215 Sum_probs=110.1
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEE-----cCHHHHHHHHHHHHHHhhccc
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQIS-----GEFSKVKDAVYNVTGRLRDNH 353 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtIt-----Gt~e~V~~A~~lI~~~l~e~~ 353 (541)
..++.||...+|.|||++|++++.|++.+|++|++. ..++.|+|. |++.++.+|..+|....+...
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id---------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD---------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE---------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE---------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 368999999999999999999999999999999995 346788888 999999999999998886321
Q ss_pred cCCCcccccccCCCCccccCCCCCCCCCCCccccccccccCCCCCCCCCccCCCccCCCCCCCCCCCCcccccccccccc
Q 009173 354 FSGTLNTARTRSTSSVLTETSPYSRLKDPASFGVHSSVAVSHDFSQPPLTQGMDHLGLSHSLDCPSSPKLWTAQTVTGVH 433 (541)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~g~~~~~~r~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~g~~ 433 (541)
+.+.+.
T Consensus 76 ~e~A~~-------------------------------------------------------------------------- 81 (191)
T 1tua_A 76 PEKAFR-------------------------------------------------------------------------- 81 (191)
T ss_dssp HHHHGG--------------------------------------------------------------------------
T ss_pred HHHhhh--------------------------------------------------------------------------
Confidence 110000
Q ss_pred CCCCCCCCCCCcCCCCCCCCCcccCCCCCcccccceEEEEEe----------ccCcccceeeCCcchHHHHHhHhCCEEE
Q 009173 434 LRGSSDVGRGWSQGLSHHKGGLELGSGSKSAIVTNTTVEIIV----------PENVIGSVYGENGSNLLRLRQISGAKVI 503 (541)
Q Consensus 434 ~~g~~d~~~~~~~g~~~~~~~l~~~sg~~~a~~~~~t~~V~I----------P~~~vG~IIGkgGs~Ik~Irq~SGA~I~ 503 (541)
+... ......+.+ +....|+|||++|.||+.|+..|||+|.
T Consensus 82 -----------------------Ll~D------d~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~ 132 (191)
T 1tua_A 82 -----------------------LLEE------DQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYIN 132 (191)
T ss_dssp -----------------------GGST------TEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEE
T ss_pred -----------------------cccC------cceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEE
Confidence 0000 000011112 2447899999999999999999999999
Q ss_pred EeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHh
Q 009173 504 VHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537 (541)
Q Consensus 504 I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~ 537 (541)
|++ +.|.|.|++++++.|+..|..+|.
T Consensus 133 v~~-------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 133 VGE-------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp ECS-------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred EcC-------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 964 489999999999999999999996
No 24
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=114.94 Aligned_cols=69 Identities=26% Similarity=0.433 Sum_probs=63.1
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHh
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR--LGSTDRIVVISGTPDETQAAQSLLQAFIL 537 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~--~~s~~RiItIsGtpeqV~~Aq~LI~~~I~ 537 (541)
.+.+|.||.+++|+||||+|++|++|++.|||+|.|.+.. +.+.+|.|+|+|+++++++|+.+|++++.
T Consensus 14 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 14 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp EEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999998643 35678999999999999999999999875
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.47 E-value=6e-14 Score=133.55 Aligned_cols=145 Identities=18% Similarity=0.236 Sum_probs=104.5
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEK 266 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~~ 266 (541)
.++++||...+|.|||++|++++.|++++||+|.+. ..++.|+|..+....+ ...+++|...|.+-......+.
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~d-p~~i~KA~dlI~ai~rgf~~e~ 78 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIP-PVNLMKAAEVVKAISLGFPPEK 78 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSC-HHHHHHHHHHHHHHHHTCCHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCC-HHHHHHHHHHHHHHHcCCCHHH
Confidence 468999999999999999999999999999999997 3578889984422111 1247777766643221110000
Q ss_pred CCCCCCCCCceeEEEEEec----------ccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHH
Q 009173 267 GLDFSSNKGLLVNARLVVA----------SNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFS 336 (541)
Q Consensus 267 g~~~~~~~~~~vt~~l~VP----------~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e 336 (541)
.. ..-.+..+.-.+.++ ....|+||||+|.+|+.|+..|||+|.|. ++.|.|.|+++
T Consensus 79 A~--~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~-----------~~~v~i~G~~~ 145 (191)
T 1tua_A 79 AF--RLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG-----------EYEVAIIGDYE 145 (191)
T ss_dssp HG--GGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC-----------SSEEEEEEEHH
T ss_pred hh--hcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc-----------CCEEEEEeChH
Confidence 00 000111222233344 23689999999999999999999999994 34899999999
Q ss_pred HHHHHHHHHHHHhh
Q 009173 337 KVKDAVYNVTGRLR 350 (541)
Q Consensus 337 ~V~~A~~lI~~~l~ 350 (541)
+++.|...|.+++.
T Consensus 146 ~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 146 RAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999995
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.47 E-value=3.8e-14 Score=118.48 Aligned_cols=70 Identities=36% Similarity=0.643 Sum_probs=64.8
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEP---RLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p---~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||.+++|+|||+||++|++|++.|||+|+|.+. .+++.++.|+|+|++++++.|+.+|+++|..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999853 3577889999999999999999999999865
No 27
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.45 E-value=9.2e-14 Score=117.90 Aligned_cols=73 Identities=25% Similarity=0.451 Sum_probs=65.8
Q ss_pred cceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCC--CCCccEEEEEeCHHHHHHHHHHHHHHHhcC
Q 009173 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRL--GSTDRIVVISGTPDETQAAQSLLQAFILTG 539 (541)
Q Consensus 467 ~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~--~s~~RiItIsGtpeqV~~Aq~LI~~~I~~~ 539 (541)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... ...+|.|+|+|+++++++|+.+|++++...
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999986432 347899999999999999999999999763
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=120.62 Aligned_cols=70 Identities=19% Similarity=0.453 Sum_probs=64.7
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+.+.+|.|+|+|+++++++|+.+|++++.+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~ 80 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 80 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999999999999999998766667789999999999999999999999875
No 29
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=9.4e-14 Score=120.65 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=64.1
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHhcC
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR---LGSTDRIVVISGTPDETQAAQSLLQAFILTG 539 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~---~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~~ 539 (541)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. .++.++.|+|+|+++++++|+.+|+++|...
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3679999999999999999999999999999999998642 3457899999999999999999999998753
No 30
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.44 E-value=9.7e-14 Score=112.24 Aligned_cols=70 Identities=23% Similarity=0.491 Sum_probs=64.2
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
..++.+|+||.+++|+||||||++|++|+++|||+|+|..+ +..+|.|+|+|+++++.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999754 24689999999999999999999999975
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=8.4e-14 Score=115.40 Aligned_cols=68 Identities=24% Similarity=0.475 Sum_probs=61.6
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
..+.+|.||.+++|+||||+|++||+|+++|||+|+|.... +++.|+|+|+++++++|+++|.+.+..
T Consensus 9 ~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 9 QTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred ceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999996422 368999999999999999999998754
No 32
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.41 E-value=2.4e-13 Score=110.53 Aligned_cols=71 Identities=31% Similarity=0.485 Sum_probs=63.3
Q ss_pred eEEEEEecccccccccccccchhhhhhcccCeeEEEccC--cccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 278 vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d--~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
.+.+|.||.+++|+||||+|++|++|++.|||+|+|.++ ..| ++.++.|+|+|+++++++|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999853 234 36789999999999999999999998853
No 33
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=3.2e-13 Score=111.55 Aligned_cols=74 Identities=28% Similarity=0.578 Sum_probs=65.1
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
+..++.+|.||.+++|+||||+|++|++|+++|||+|+|..+ . .++.++.|+|+|+++++++|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-V---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-C---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-C---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999742 2 2467899999999999999999999999754
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.40 E-value=5.3e-13 Score=110.32 Aligned_cols=74 Identities=26% Similarity=0.581 Sum_probs=65.7
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|..+ .| +++++.|+|+|++++|++|+.+|.+++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999999999999999732 23 367899999999999999999999999753
No 35
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=110.45 Aligned_cols=72 Identities=28% Similarity=0.563 Sum_probs=64.8
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
..++.+|.||.+++|+||||+|++|++|++.|||+|+|... . .++.++.|+|+|+++++++|+.+|.+++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-V---EGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-C---TTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-C---CCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999999999999742 2 346789999999999999999999999864
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=6.3e-13 Score=114.83 Aligned_cols=70 Identities=27% Similarity=0.451 Sum_probs=63.4
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCC--CCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLG--STDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~--s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..++ +.++.|+|+|+++++++|+.+|++++..
T Consensus 15 ~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 15 VFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999864433 3689999999999999999999999854
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=5.4e-13 Score=111.48 Aligned_cols=72 Identities=31% Similarity=0.476 Sum_probs=64.7
Q ss_pred eEEEEEecccccccccccccchhhhhhcccCeeEEEccC--cccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD--QLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 278 vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d--~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
.+.+|.||.+++|+||||+|++|++|++.|||+|.|..+ ..|+ +.++.|+|+|++++++.|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g---~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG---TRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT---SCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC---CCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999843 2343 67899999999999999999999999764
No 38
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=114.11 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=64.6
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
+.+|.||.+++|+||||+|++|++|+++|||+|+|..+..|. .+.+++.|+|+|+.++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~-~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN-GDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT-CCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC-CCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999999999999998554332 2356799999999999999999999999753
No 39
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=6.3e-13 Score=110.15 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=62.5
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhh
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLR 350 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~ 350 (541)
....+.+|.||.+++|+||||+|++||+|+++|||+|+|++. ..+++|+|+|+++++++|+++|.+++.
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~-------~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR-------DKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS-------SSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC-------CCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999999742 236899999999999999999999875
No 40
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.33 E-value=1.7e-12 Score=109.62 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=66.0
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|..+. + +..++.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4568899999999999999999999999999999999997442 2 356899999999999999999999999753
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.33 E-value=1e-12 Score=110.27 Aligned_cols=75 Identities=25% Similarity=0.569 Sum_probs=66.5
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|..+ .| .++++.|+|+|+++++++|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3567889999999999999999999999999999999999732 23 367899999999999999999999999753
No 42
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=106.71 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=64.7
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|..+..+ ..+.+|.|+|+|+++++++|+.+|.++++|
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ--NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS--STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC--CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999999865432 236789999999999999999999998853
No 43
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.31 E-value=1.8e-12 Score=109.85 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=66.8
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
...++.+|.||.+++|+||||+|++|++|+++|||+|.|.++..+. ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999999998553321 246899999999999999999999999753
No 44
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.29 E-value=2.4e-12 Score=103.45 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=60.5
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHH
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFI 536 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I 536 (541)
.++.+|.||.+++|.|||+||++|++|+++|||+|.|+++ +..++.|+|+|+++++++|+.+|.+.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999753 346789999999999999999998753
No 45
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=3.4e-12 Score=108.21 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=62.6
Q ss_pred cceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 467 ~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+.+|.||.+++|.|||+||.+|++|+++|||+|+|+++ +..++.|+|+|+++++++|+.+|++.+..
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~--~~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP--DDPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT--TSSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC--CCCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999999999999999999653 23458999999999999999999998854
No 46
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=7e-12 Score=106.91 Aligned_cols=70 Identities=13% Similarity=0.218 Sum_probs=62.9
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCC-CCCCccEEEEEeCHHHHHHHHHHHHHHHh
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPR-LGSTDRIVVISGTPDETQAAQSLLQAFIL 537 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~-~~s~~RiItIsGtpeqV~~Aq~LI~~~I~ 537 (541)
..+..|.||.+++|.|||+||++|++|++.|||+|+|++.. +...++.|+|+|+++++++|+.+|...+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVG 86 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999997543 23367999999999999999999999875
No 47
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=5.9e-12 Score=109.08 Aligned_cols=71 Identities=18% Similarity=0.358 Sum_probs=62.9
Q ss_pred eEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 278 VNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 278 vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|..+. + .+.+|.|+|+|+++++++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3679999999999999999999999999999999997442 1 256899999999999999999999999754
No 48
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.24 E-value=8.2e-12 Score=107.81 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=65.7
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
....+.+|.||.+++|+||||+|++|++|+++|||+|+|..+..+ ..+.++.|+|+|+.+++++|+.+|.+++.+.
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG--TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 456788999999999999999999999999999999999743211 1235899999999999999999999999764
No 49
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=1.2e-11 Score=105.15 Aligned_cols=70 Identities=10% Similarity=0.184 Sum_probs=62.6
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
..+.+|.||.+++|.|||+||++|++|+++|||+|+|++. .+..++.|+|+|+++++++|+.+|.+.+..
T Consensus 16 ~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~-g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 16 MVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQS-GAPDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCT-TCSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCC-CCCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999753 223568999999999999999999998754
No 50
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.20 E-value=1.4e-11 Score=98.93 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=59.9
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHh
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRL 349 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l 349 (541)
..+..|.||.+++|.|||+||++|++|+++|||+|.|+.+. ..++.|+|+|+.+++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999997442 35689999999999999999998764
No 51
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.7e-11 Score=104.47 Aligned_cols=72 Identities=13% Similarity=0.179 Sum_probs=63.9
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
.++..|.||..++|.||||+|++|++|+++|||+|.|+.+.-|. ..++.|+|+|+.+++.+|+.+|..++.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~---~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN---QPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS---SCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC---CCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999998543332 4678999999999999999999999864
No 52
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.18 E-value=2.3e-11 Score=105.02 Aligned_cols=68 Identities=22% Similarity=0.311 Sum_probs=61.3
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||.+++|.|||+||++|++|+++|||+|+|.++ +...+.|+|+|+++++++|+.+|.+.+..
T Consensus 17 ~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 17 VTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp EEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999999999999754 33457999999999999999999998753
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=4e-11 Score=101.80 Aligned_cols=75 Identities=13% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhccc
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDNH 353 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~~ 353 (541)
....++..|.||.+++|.|||++|++|++|+++|||+|+|+.+. ..+++.|+|+|.+++|++|+.+|..++.+..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-----APDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999997431 1346799999999999999999999987643
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=2.7e-11 Score=102.64 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=63.8
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
...++.+|.||.+++|.||||||++|++|+++|||+|.|+... ..++.|+|+|+++++.+|+.+|..++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568899999999999999999999999999999999997321 23578999999999999999999999764
No 55
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.11 E-value=1.2e-10 Score=121.28 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCceeEEEEEeccccccccccccc--chhhhhhcccCeeEEEccCcccc-cCCCCCceEEEEcCHHHHHHHHHHHHHHh
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGG--TIISEMRKVTGTSIRIISDQLLK-CISENDRVVQISGEFSKVKDAVYNVTGRL 349 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG--~tIkeIr~~TGA~I~I~~d~~P~-~~~s~ervVtItGt~e~V~~A~~lI~~~l 349 (541)
..+.+|.++.||..+++.||||+| ++|++|+++|||+|+++....+. ........|+|+|.+++|++|+..|.+.+
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 467899999999999999999999 99999999999999998332000 01134568999999999999999888743
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.05 E-value=1.3e-10 Score=100.17 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=62.0
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
..+..|.||.+++|.|||+||++|++|+++|||+|.|+.+. ...+.|+|+|+.+++++|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47889999999999999999999999999999999997431 23468999999999999999999998653
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=2e-10 Score=97.41 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=63.1
Q ss_pred cceEEEEEeccCcccceeeCCcchHHHHHhHh-CCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 467 TNTTVEIIVPENVIGSVYGENGSNLLRLRQIS-GAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 467 ~~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~S-GA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
...+..|.||.++++.|||+||.+|++|+++| ||+|.|++ .++..+.|+|+|+.+++++|+.+|++.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999 99999964 455678999999999999999999998864
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=3.7e-10 Score=97.10 Aligned_cols=65 Identities=17% Similarity=0.348 Sum_probs=59.2
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhH-hCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHhc
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQI-SGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFILT 538 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~-SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~~ 538 (541)
.+.+|.||..++++|||++|++|++|++. ++++|.+++ .++.|+|+|++++|++|+..|++++..
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999997 589999865 357999999999999999999998854
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.91 E-value=9.8e-10 Score=93.18 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhccc-CeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVT-GTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~T-GA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
..+.++..|.||..+++.|||++|++|++|+++| ||+|.|+.+ ++..+.|+|+|+..+|++|+.+|..++.+.
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 3567789999999999999999999999999999 999999743 234568999999999999999999999754
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=1.8e-09 Score=90.49 Aligned_cols=63 Identities=25% Similarity=0.459 Sum_probs=57.1
Q ss_pred ceEEEEEeccCcccceeeCCcchHHHHHhHhCCE-EEEeCCCCCCCccEEEEEe-CHHHHHHHHHHHHHH
Q 009173 468 NTTVEIIVPENVIGSVYGENGSNLLRLRQISGAK-VIVHEPRLGSTDRIVVISG-TPDETQAAQSLLQAF 535 (541)
Q Consensus 468 ~~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~-I~I~~p~~~s~~RiItIsG-tpeqV~~Aq~LI~~~ 535 (541)
....+|.||.+++|.|||+||.+|++|++.|||+ |.|.+ ++..|+|.| +.+++++|+.+|...
T Consensus 14 ~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4788999999999999999999999999999998 99974 248899999 899999999998653
No 61
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.82 E-value=4.8e-09 Score=90.09 Aligned_cols=67 Identities=15% Similarity=0.255 Sum_probs=60.1
Q ss_pred eeEEEEEecccccccccccccchhhhhhcc-cCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKV-TGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~-TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
.++.+|.||..+++.|||++|++|++|+++ ++++|.|++ .++.|+|+|+++.|.+|+.+|..++.+.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~---------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE---------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS---------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC---------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999996 599999863 2568999999999999999999998754
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.67 E-value=2e-08 Score=84.07 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=58.5
Q ss_pred CceeEEEEEecccccccccccccchhhhhhcccCee-EEEccCcccccCCCCCceEEEEc-CHHHHHHHHHHHHHHhh
Q 009173 275 GLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTS-IRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLR 350 (541)
Q Consensus 275 ~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~-I~I~~d~~P~~~~s~ervVtItG-t~e~V~~A~~lI~~~l~ 350 (541)
...+...|.||.+++|.+||++|++|++|+++|||+ |.|.. .+..|+|.| +.+++++|+.+|..+-.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e---------ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE---------DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc---------CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 455788999999999999999999999999999998 99942 258899999 89999999988876554
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.52 E-value=1.6e-07 Score=84.12 Aligned_cols=73 Identities=14% Similarity=0.323 Sum_probs=60.0
Q ss_pred ccceEEEEEeccC------cccceeeCCcchHHHHHhHhCCEEEEeCCC----------------CCCCccEEEEEe-CH
Q 009173 466 VTNTTVEIIVPEN------VIGSVYGENGSNLLRLRQISGAKVIVHEPR----------------LGSTDRIVVISG-TP 522 (541)
Q Consensus 466 ~~~~t~~V~IP~~------~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~----------------~~s~~RiItIsG-tp 522 (541)
+...+..|.||.+ ++|.|||++|.+||+|+++|||+|.|.... ....+-.|.|++ ++
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3457889999987 889999999999999999999999997410 011356788999 58
Q ss_pred HHHHHHHHHHHHHHhc
Q 009173 523 DETQAAQSLLQAFILT 538 (541)
Q Consensus 523 eqV~~Aq~LI~~~I~~ 538 (541)
+.+++|+.+|+.++..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8999999999999864
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=6.3e-07 Score=78.85 Aligned_cols=70 Identities=24% Similarity=0.253 Sum_probs=54.9
Q ss_pred eEEEEEeccC-------cccceeeCCcchHHHHHhHhCCEEEEeCCCC----------CCCccEEEEEe-CHHHHHHHHH
Q 009173 469 TTVEIIVPEN-------VIGSVYGENGSNLLRLRQISGAKVIVHEPRL----------GSTDRIVVISG-TPDETQAAQS 530 (541)
Q Consensus 469 ~t~~V~IP~~-------~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~----------~s~~RiItIsG-tpeqV~~Aq~ 530 (541)
.+..|.||-+ ++|.|||++|.+||+|+++|||+|.|..... ...+-.|.|++ +++++++|+.
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4567777754 7899999999999999999999999962110 11334677775 5999999999
Q ss_pred HHHHHHhc
Q 009173 531 LLQAFILT 538 (541)
Q Consensus 531 LI~~~I~~ 538 (541)
||++++..
T Consensus 92 ~Ie~Ll~~ 99 (119)
T 2yqr_A 92 LCENLLQT 99 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhc
Confidence 99998863
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.29 E-value=1.1e-06 Score=78.61 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=59.9
Q ss_pred ceeEEEEEeccc------ccccccccccchhhhhhcccCeeEEEccC-ccc-----------ccCCCCCceEEEEc-CHH
Q 009173 276 LLVNARLVVASN------QVGCLLGKGGTIISEMRKVTGTSIRIISD-QLL-----------KCISENDRVVQISG-EFS 336 (541)
Q Consensus 276 ~~vt~~l~VP~~------~vG~IIGKgG~tIkeIr~~TGA~I~I~~d-~~P-----------~~~~s~ervVtItG-t~e 336 (541)
..++.++.||.. ++|.|||++|.+||+|+++|||+|.|... ... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457889999987 89999999999999999999999999731 100 00112244588999 688
Q ss_pred HHHHHHHHHHHHhhc
Q 009173 337 KVKDAVYNVTGRLRD 351 (541)
Q Consensus 337 ~V~~A~~lI~~~l~e 351 (541)
++++|+.+|..++.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999964
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.18 E-value=4e-06 Score=73.69 Aligned_cols=76 Identities=14% Similarity=0.076 Sum_probs=57.0
Q ss_pred ceeEEEEEeccc-------ccccccccccchhhhhhcccCeeEEEccCc------ccccCCCCCceEEEEc-CHHHHHHH
Q 009173 276 LLVNARLVVASN-------QVGCLLGKGGTIISEMRKVTGTSIRIISDQ------LLKCISENDRVVQISG-EFSKVKDA 341 (541)
Q Consensus 276 ~~vt~~l~VP~~-------~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~------~P~~~~s~ervVtItG-t~e~V~~A 341 (541)
..++.++.||-. ++|.|||++|.+||+|+++|||+|.|.... ........+-.|.|++ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 356778888865 789999999999999999999999996221 0000011233577775 68999999
Q ss_pred HHHHHHHhhc
Q 009173 342 VYNVTGRLRD 351 (541)
Q Consensus 342 ~~lI~~~l~e 351 (541)
+.+|.+++.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999864
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.08 E-value=2.2e-06 Score=77.34 Aligned_cols=73 Identities=27% Similarity=0.291 Sum_probs=54.8
Q ss_pred eEEEEEecccc------cccccccccchhhhhhcccCeeEEEccCc-------------ccccCCCCCc-eEEEEcCHH-
Q 009173 278 VNARLVVASNQ------VGCLLGKGGTIISEMRKVTGTSIRIISDQ-------------LLKCISENDR-VVQISGEFS- 336 (541)
Q Consensus 278 vt~~l~VP~~~------vG~IIGKgG~tIkeIr~~TGA~I~I~~d~-------------~P~~~~s~er-vVtItGt~e- 336 (541)
++.++.||-.. +|.|||++|.++|+|+++|||+|.|-+.. .|+.+..++. -|.|++...
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 45678888554 89999999999999999999999998421 1211122333 488998533
Q ss_pred -----HHHHHHHHHHHHhh
Q 009173 337 -----KVKDAVYNVTGRLR 350 (541)
Q Consensus 337 -----~V~~A~~lI~~~l~ 350 (541)
.+++|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78999999999885
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=97.96 E-value=5.2e-06 Score=74.87 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=35.5
Q ss_pred eEEEEEecccc------ccceeccCchHHHHHHHHhCCeEEecCC
Q 009173 186 VSFRILCSNDK------VGAVIGKGGTIIRALQSEAGAFISVGAT 224 (541)
Q Consensus 186 ~~~rilvP~~~------vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~ 224 (541)
++-||.||.+. +|.|||.+|.++|+|+++|||+|.|...
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGk 46 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGK 46 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEEST
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecC
Confidence 57789999776 9999999999999999999999999864
No 69
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.67 E-value=8.6e-05 Score=65.95 Aligned_cols=67 Identities=13% Similarity=0.222 Sum_probs=59.4
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHh
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQAFIL 537 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~~I~ 537 (541)
-..+.+.++.++.|+|++|+.|+.|++.|.|.|+|..-.+ ++.-.|+|-|++..-..|+.+|+....
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999986533 367889999999999999999998763
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.67 E-value=4.3e-05 Score=84.83 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=53.9
Q ss_pred ceeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcC-HHHHHHHHHHHHHHh
Q 009173 276 LLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRL 349 (541)
Q Consensus 276 ~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt-~e~V~~A~~lI~~~l 349 (541)
......+.||.+++|.|||+||++||+|+++|||+|.|. .+..|.|.|. .+++++|+.+|..++
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999994 3568999986 578899998887654
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.57 E-value=2.9e-05 Score=86.26 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=54.1
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT-PDETQAAQSLLQAFI 536 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGt-peqV~~Aq~LI~~~I 536 (541)
....+.||.+++|.|||+||.+||.|.++|||+|.|.+ +..|.|.|+ ++.+++|+.+|.+.+
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999999964 368999986 788999999998764
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.38 E-value=6.9e-05 Score=67.92 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=72.0
Q ss_pred eEEEEEeccccccceeccCchHHHHHHHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcccc
Q 009173 186 VSFRILCSNDKVGAVIGKGGTIIRALQSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSE 265 (541)
Q Consensus 186 ~~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~ 265 (541)
-.+.++|+...+|+.||++|++|+.|+++.|-+|.|-. =+.++ . ..+..-+......
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~-------------~s~d~-------~---~fI~naLsPA~V~ 92 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE-------------YSSDL-------E---RIVKNLFPGVKIE 92 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE-------------CCSSH-------H---HHHHHHSTTSCEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE-------------cCCCH-------H---HHHHHhcCCceEE
Confidence 36779999999999999999999999999999998742 11121 1 1111111110000
Q ss_pred cCCCCCCCCCceeEEEEEecccccccccccccchhhhhhcccCeeEEEc
Q 009173 266 KGLDFSSNKGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (541)
Q Consensus 266 ~g~~~~~~~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~ 314 (541)
. .... ..+......+.||.++.+..|||+|.+++-..+.||.+|.|.
T Consensus 93 ~-V~i~-~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 93 S-INVR-ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp E-EEEE-EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred E-EEEe-ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0 0000 002345678899999999999999999999999999988773
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.21 E-value=0.0005 Score=61.04 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=58.4
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHHHHhhc
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~~~l~e 351 (541)
...+.|.+..++.|+|++|+.|++|+..|++.|++..- ..++.-.|+|.|++..-.+|+.+|......
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-----CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999632 113456699999999999999999988753
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.88 E-value=0.00052 Score=77.13 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=11.7
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcC-HHHHHHHHHHHHHHhhcc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt-~e~V~~A~~lI~~~l~e~ 352 (541)
.....+.||.+++|.|||+||++||+|+++||++|.|. .+..|.|.+. .+++++|+.+|..++.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC-----------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 34568899999999999999999999999999999984 2456777775 788899999998888643
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.55 E-value=0.00046 Score=77.55 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=11.2
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHh
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT-PDETQAAQSLLQAFIL 537 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGt-peqV~~Aq~LI~~~I~ 537 (541)
...+.||.+++|.|||+||.+|+.|.++|||+|.|.+ +..|.|.++ .+.+++|+..|..++.
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 4578999999999999999999999999999999964 255777665 8899999999988764
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.52 E-value=0.00064 Score=61.54 Aligned_cols=36 Identities=25% Similarity=0.607 Sum_probs=33.7
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEc
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRII 314 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~ 314 (541)
.+.++|+...+|..||++|+.|+.|+++.|-+|.|.
T Consensus 37 r~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 37 RLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp EEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred EEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 578999999999999999999999999999999885
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.38 E-value=0.02 Score=59.14 Aligned_cols=96 Identities=27% Similarity=0.293 Sum_probs=64.8
Q ss_pred ccccceeccCchHHHHHHHHh-CCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCCCC
Q 009173 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (541)
Q Consensus 195 ~~vG~IIGKgG~~Ik~Iq~eT-Ga~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~~g~~~~~~ 273 (541)
+-+|+.||++|++|+.|.++. |=+|.|-. =++++ ...+..-+........ . ..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp----------~~fi~nalsPA~V~~V-~-~~- 302 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP----------ARFVANALSPAKVVSV-S-VI- 302 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTTTSCCSEE-E-EE-
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEE-------------cCCCH----------HHHHHHhcCCcceeEE-E-EE-
Confidence 469999999999999999998 77777642 22222 1111111111100000 0 00
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEccC
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISD 316 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d 316 (541)
......+.+.||..+.+..|||+|.+++-..+.||.+|.|..+
T Consensus 303 ~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 303 DQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp ETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 0113367899999999999999999999999999999999743
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.98 E-value=0.024 Score=55.58 Aligned_cols=95 Identities=24% Similarity=0.272 Sum_probs=61.8
Q ss_pred ccccceeccCchHHHHH-HHHhCCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCCCC
Q 009173 195 DKVGAVIGKGGTIIRAL-QSEAGAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (541)
Q Consensus 195 ~~vG~IIGKgG~~Ik~I-q~eTGa~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~~g~~~~~~ 273 (541)
+-+|+-||++|++|+.| ++-.|=+|.|-. =++++ ...+..-+......... . .+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~-------------~s~dp----------~~fi~nalsPA~V~~V~-i-~~ 180 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIID-------------YDDDP----------ARFVANALSPAKVVSVS-V-ID 180 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEE-------------CCSSH----------HHHHHHHTTTSCCSEEE-E-EE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEE-------------ecCCH----------HHHHHhccCCcceEEEE-E-Ec
Confidence 34999999999999999 555677777642 22222 11111111111000000 0 00
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEcc
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~ 315 (541)
. ....+.+.||..+.+.-|||+|.+++--.+.||.+|.|..
T Consensus 181 ~-~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 181 Q-TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp T-TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred C-CCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 1 1136789999999999999999999999999999999973
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=93.68 E-value=0.061 Score=52.78 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=35.0
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEe
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~ 505 (541)
....+.||.+..+.-|||+|.|++.-.+.||.+|.|.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 220 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 220 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecce
Confidence 3679999999999999999999999999999999997
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.12 E-value=0.019 Score=65.05 Aligned_cols=61 Identities=18% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcC-HHHHHHHHHHHHHHh
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGE-FSKVKDAVYNVTGRL 349 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt-~e~V~~A~~lI~~~l 349 (541)
...+.||.+++|.+||++|++|++|++++|+.|.|. .+..|.|.+. ....++|...|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC------------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEec----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 446789999999999999999999999999999884 2456777764 556666766665544
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.90 E-value=0.034 Score=62.65 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=0.0
Q ss_pred eeEEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEc-CHHHHHHHHHHHHHHhhc
Q 009173 277 LVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISG-EFSKVKDAVYNVTGRLRD 351 (541)
Q Consensus 277 ~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItG-t~e~V~~A~~lI~~~l~e 351 (541)
.....+.||.++++.+||+||.+|++|.+++|+.|.|. .+..|.|.+ +...+++|..+|..++.+
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE----------DDGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEec----------CCccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999883 245667766 456777787777766543
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=92.47 E-value=0.12 Score=53.53 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=35.1
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEe
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~ 505 (541)
....+.||.+..+..|||+|.|++-..+.||.+|.|.
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~ 343 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIR 343 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEE
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeee
Confidence 4679999999999999999999999999999999996
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=91.91 E-value=0.029 Score=63.16 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=0.0
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT-PDETQAAQSLLQAFI 536 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGt-peqV~~Aq~LI~~~I 536 (541)
...+.||.++++.|||+||.+|+.|.+.+|+.|.|.+ +..|.|++. .+..++|+..|..++
T Consensus 561 ~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 561 IHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred EEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999998864 356777665 667788888877664
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.89 E-value=0.17 Score=52.08 Aligned_cols=95 Identities=32% Similarity=0.371 Sum_probs=62.8
Q ss_pred ccccceeccCchHHHHHHHHh-CCeEEecCCCCCCCcceEEEecCCCCCCCCCHHHHHHHHHHHHHhhcccccCCCCCCC
Q 009173 195 DKVGAVIGKGGTIIRALQSEA-GAFISVGATMPECDERLITVTASEGPESRYSPAQKAVVLVFSRLIEGTSEKGLDFSSN 273 (541)
Q Consensus 195 ~~vG~IIGKgG~~Ik~Iq~eT-Ga~I~I~~~~~~~~eRvV~ItG~~~~~~~~s~a~~Ai~~i~~~i~e~~~~~g~~~~~~ 273 (541)
+-+|+.||.+|++|+.+.++. |=+|.|- .=++++ ...+..-+.......- ...
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii-------------~~s~d~----------~~fi~nal~Pa~v~~v---~~~ 298 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVL-------------KWSDDP----------KQLIANALAPATVIEV---EIL 298 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEE-------------ECCSSH----------HHHHHHHTCSSCCSEE---EEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEE-------------ecCCCH----------HHHHHHhcCccEEEEE---EEE
Confidence 358999999999999999998 6666653 222222 1111111111000000 000
Q ss_pred CCceeEEEEEecccccccccccccchhhhhhcccCeeEEEcc
Q 009173 274 KGLLVNARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIIS 315 (541)
Q Consensus 274 ~~~~vt~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~ 315 (541)
.+....+.+.||..+.+.-|||+|.+++--.+.||.+|.|..
T Consensus 299 d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 299 DKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp ETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 011236789999999999999999999999999999999863
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.62 E-value=0.013 Score=66.28 Aligned_cols=59 Identities=19% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHH
Q 009173 472 EIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGT-PDETQAAQSLLQAFI 536 (541)
Q Consensus 472 ~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGt-peqV~~Aq~LI~~~I 536 (541)
.+.||.+++|.|||++|.+|+.|.+.+||.|.|.+ +..|.|++. .+..++|+..|....
T Consensus 601 ~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 601 TVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999964 356788765 667777877776654
No 86
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=71.06 E-value=2.1 Score=38.76 Aligned_cols=30 Identities=20% Similarity=0.140 Sum_probs=25.2
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhC
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAG 216 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTG 216 (541)
++.+-+-.+..|.+|||.|.++++||--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 455666788999999999999999998773
No 87
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=68.76 E-value=2.4 Score=43.43 Aligned_cols=37 Identities=19% Similarity=0.393 Sum_probs=35.0
Q ss_pred eEEEEEeccCcccceeeCCcchHHHHHhHhCCEEEEe
Q 009173 469 TTVEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVH 505 (541)
Q Consensus 469 ~t~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~ 505 (541)
....+.||.+..+.-|||+|.|++.-.+.||.+|.|.
T Consensus 303 ~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 303 KAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 4689999999999999999999999999999999985
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=65.52 E-value=2.5 Score=34.95 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.3
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.||||+|+.|++|+.+-
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 46677788889999999999999987753
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=54.85 E-value=5.8 Score=35.83 Aligned_cols=65 Identities=9% Similarity=0.032 Sum_probs=40.0
Q ss_pred EEEEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCce-EEEEcCHHHHHHHHHHHHHHhhcc
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRV-VQISGEFSKVKDAVYNVTGRLRDN 352 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~erv-VtItGt~e~V~~A~~lI~~~l~e~ 352 (541)
++.+.+-.+..|.||||.|.|++.||-.+..- +.+. ..-++ +-+.|=.+.-++.+..+..++.+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~--vn~~-------~~~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW--IHPT-------YGYSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH--HHHH-------HSCEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH--hhhc-------CCceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 45677788999999999999999998665221 1111 00122 334444555555666666666543
No 90
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=51.65 E-value=4.5 Score=33.37 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.9
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHh
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQ 496 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq 496 (541)
..+|.|-...-|.|||++|..|++|++
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 467888888899999999999988765
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=36.67 E-value=46 Score=31.71 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=46.4
Q ss_pred EEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEeCHHHHHHHHHHHHH
Q 009173 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISGTPDETQAAQSLLQA 534 (541)
Q Consensus 471 ~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsGtpeqV~~Aq~LI~~ 534 (541)
+-+.++..++.+++|++++-++.|.+.+++.|.|.. +..|=|+++...+..+...|+.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ------NGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT------TSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC------CcEEEEeCCchhHHHHHHHHHH
Confidence 356889999999999999999999999999999943 2456689988766666665543
No 92
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=35.53 E-value=11 Score=36.09 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=27.0
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHhCCeEE
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEAGAFIS 220 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eTGa~I~ 220 (541)
.+.+.+..+..|.+|||.|++++.||.-+..-++
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3445566778999999999999999998875443
No 93
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.52 E-value=14 Score=35.01 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=23.3
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.|||++|+.|++|+..-
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 34566777888999999999999887653
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=32.79 E-value=15 Score=35.61 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.3
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.|||++|+.|++|+..-
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 45677788889999999999999887664
No 95
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=31.30 E-value=20 Score=34.81 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.|||++|+.|++|+..-
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 46677788889999999999999988764
No 96
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.68 E-value=15 Score=35.28 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=24.7
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.|||++|+.|++|+.+-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46677888899999999999999987754
No 97
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=29.45 E-value=25 Score=34.76 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceEEEEEeccc-cccceeccCchHHHHHHH--------HhCCeEEec
Q 009173 185 EVSFRILCSND-KVGAVIGKGGTIIRALQS--------EAGAFISVG 222 (541)
Q Consensus 185 ~~~~rilvP~~-~vG~IIGKgG~~Ik~Iq~--------eTGa~I~I~ 222 (541)
.+...|+|..+ ..+.||||+|+.||+|.. -.|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 35666777665 678899999999997754 456666653
No 98
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=28.20 E-value=96 Score=29.51 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=46.9
Q ss_pred EEEEeccCcccceeeCCcchHHHHHhHhCCEEEEeCCCCCCCccEEEEEe-CHHHHHHHHHHHHHH
Q 009173 471 VEIIVPENVIGSVYGENGSNLLRLRQISGAKVIVHEPRLGSTDRIVVISG-TPDETQAAQSLLQAF 535 (541)
Q Consensus 471 ~~V~IP~~~vG~IIGkgGs~Ik~Irq~SGA~I~I~~p~~~s~~RiItIsG-tpeqV~~Aq~LI~~~ 535 (541)
+-+.++..++.+++|++|+.+..|.+.+++.|.|.. +..|-|++ +++.+..+...|+..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 456889999999999999999999989999999954 35566774 677777666666543
No 99
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=26.41 E-value=16 Score=34.61 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=24.9
Q ss_pred EEEEeccccccceeccCchHHHHHHHH----hCCeEEe
Q 009173 188 FRILCSNDKVGAVIGKGGTIIRALQSE----AGAFISV 221 (541)
Q Consensus 188 ~rilvP~~~vG~IIGKgG~~Ik~Iq~e----TGa~I~I 221 (541)
.++.|-...-|.|||++|+.|++|+.+ ++..+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 445666778899999999999988764 5544333
No 100
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.03 E-value=18 Score=35.01 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.8
Q ss_pred EEEEEeccccccceeccCchHHHHHHHHh
Q 009173 187 SFRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 187 ~~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
..++.|-...-|.|||++|+.|++|++.-
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 56677788889999999999999988764
No 101
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=24.51 E-value=24 Score=34.17 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=23.3
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhH
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQI 497 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~ 497 (541)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3577888888999999999999987643
No 102
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=24.12 E-value=94 Score=29.53 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=42.3
Q ss_pred EEEecccccccccccccchhhhhhcccCeeEEEccCcccccCCCCCceEEEEcCHHHHHHHHHHHH
Q 009173 281 RLVVASNQVGCLLGKGGTIISEMRKVTGTSIRIISDQLLKCISENDRVVQISGEFSKVKDAVYNVT 346 (541)
Q Consensus 281 ~l~VP~~~vG~IIGKgG~tIkeIr~~TGA~I~I~~d~~P~~~~s~ervVtItGt~e~V~~A~~lI~ 346 (541)
-+.++...+.+++|+++..++.|.+.+++.|.+= .+-.|=|.++......+...|.
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG----------~NG~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG----------QNGLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC----------TTSEEEEESCHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE----------CCcEEEEeCCchhHHHHHHHHH
Confidence 4578999999999999999999999999999882 2345668888764444444443
No 103
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=23.94 E-value=18 Score=34.81 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=22.0
Q ss_pred EEEEeccccccceeccCchHHHHHHHH
Q 009173 188 FRILCSNDKVGAVIGKGGTIIRALQSE 214 (541)
Q Consensus 188 ~rilvP~~~vG~IIGKgG~~Ik~Iq~e 214 (541)
+++.|-...-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456667778899999999999988764
No 104
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.49 E-value=22 Score=33.66 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=26.3
Q ss_pred EEEEeccCcccceeeCCcchHHHHHh----HhC---CEEEEe
Q 009173 471 VEIIVPENVIGSVYGENGSNLLRLRQ----ISG---AKVIVH 505 (541)
Q Consensus 471 ~~V~IP~~~vG~IIGkgGs~Ik~Irq----~SG---A~I~I~ 505 (541)
.+|.|-...-|.|||++|..|++|++ .+| .+|.|.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 46777778889999999999998754 556 345553
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=23.41 E-value=30 Score=34.11 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=27.4
Q ss_pred eEEEEEeccC-cccceeeCCcchHHHHH--------hHhCCEEEEe
Q 009173 469 TTVEIIVPEN-VIGSVYGENGSNLLRLR--------QISGAKVIVH 505 (541)
Q Consensus 469 ~t~~V~IP~~-~vG~IIGkgGs~Ik~Ir--------q~SGA~I~I~ 505 (541)
....+.|..+ .-+-|||++|+.||+|. +..|++|.+.
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 5567778775 44889999999999664 4567776663
No 106
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=23.09 E-value=27 Score=33.78 Aligned_cols=28 Identities=39% Similarity=0.608 Sum_probs=22.1
Q ss_pred EEEEeccccccceeccCchHHHHHHHHh
Q 009173 188 FRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 188 ~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
+++.|-...-|.|||++|+.|++|+.+.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~L 91 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREEL 91 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHHH
Confidence 3455566778999999999999988763
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=21.86 E-value=30 Score=33.49 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.8
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhH
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQI 497 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~ 497 (541)
..+|.|-...-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4678888889999999999999987664
No 108
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=21.29 E-value=26 Score=33.61 Aligned_cols=31 Identities=16% Similarity=0.434 Sum_probs=25.5
Q ss_pred EEEEEecccccccccccccchhhhhhcccCe
Q 009173 279 NARLVVASNQVGCLLGKGGTIISEMRKVTGT 309 (541)
Q Consensus 279 t~~l~VP~~~vG~IIGKgG~tIkeIr~~TGA 309 (541)
++.+.|.....|.||||.|.++..||-.+..
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 3456667788999999999999999987654
No 109
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.88 E-value=24 Score=33.67 Aligned_cols=28 Identities=7% Similarity=0.052 Sum_probs=22.3
Q ss_pred EEEEeccccccceeccCchHHHHHHHHh
Q 009173 188 FRILCSNDKVGAVIGKGGTIIRALQSEA 215 (541)
Q Consensus 188 ~rilvP~~~vG~IIGKgG~~Ik~Iq~eT 215 (541)
+++.|-...-|.||||+|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 3455666778999999999999988764
No 110
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.77 E-value=25 Score=33.77 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=23.4
Q ss_pred EEEEEeccCcccceeeCCcchHHHHHhH
Q 009173 470 TVEIIVPENVIGSVYGENGSNLLRLRQI 497 (541)
Q Consensus 470 t~~V~IP~~~vG~IIGkgGs~Ik~Irq~ 497 (541)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4677888888999999999999987543
Done!