Query 009175
Match_columns 541
No_of_seqs 339 out of 1564
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 21:20:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 2.3E-92 4.9E-97 744.7 39.8 404 48-504 1-406 (406)
2 KOG4711 Predicted membrane pro 100.0 7.6E-70 1.6E-74 593.1 20.1 479 32-515 67-599 (625)
3 TIGR01667 YCCS_YHJK integral m 99.9 9.8E-25 2.1E-29 246.5 35.5 281 43-365 368-649 (701)
4 PF04632 FUSC: Fusaric acid re 99.9 1.1E-24 2.3E-29 245.7 35.6 210 57-298 1-211 (650)
5 TIGR01666 YCCS hypothetical me 99.9 3.3E-24 7.3E-29 241.6 37.3 303 46-395 369-672 (704)
6 PRK10631 p-hydroxybenzoic acid 99.9 1.4E-22 3.1E-27 225.8 35.5 218 52-299 3-230 (652)
7 PRK11427 multidrug efflux syst 99.9 2.9E-19 6.2E-24 198.6 35.7 243 26-295 312-563 (683)
8 COG1289 Predicted membrane pro 99.7 1.1E-15 2.4E-20 173.8 29.6 183 50-248 347-530 (674)
9 PRK11427 multidrug efflux syst 99.7 1.2E-13 2.6E-18 154.1 31.8 171 53-241 25-202 (683)
10 COG4129 Predicted membrane pro 99.7 2.2E-13 4.8E-18 141.5 31.2 161 58-241 10-170 (332)
11 PF13515 FUSC_2: Fusaric acid 99.6 2.8E-14 6E-19 127.9 14.4 114 86-212 12-128 (128)
12 PF06081 DUF939: Bacterial pro 99.5 7.8E-13 1.7E-17 122.0 16.4 136 60-216 6-141 (141)
13 COG1289 Predicted membrane pro 99.5 1.9E-11 4.1E-16 139.3 30.5 164 56-232 9-175 (674)
14 PF10337 DUF2422: Protein of u 99.5 2.5E-10 5.3E-15 124.6 34.9 270 45-328 3-314 (459)
15 PF10334 DUF2421: Protein of u 99.4 1.3E-10 2.8E-15 115.6 21.9 148 216-374 1-153 (229)
16 PF04632 FUSC: Fusaric acid re 99.2 4.2E-08 9.1E-13 111.2 33.6 174 56-240 338-513 (650)
17 PF12805 FUSC-like: FUSC-like 99.0 2E-07 4.3E-12 95.7 27.3 180 194-394 70-254 (284)
18 TIGR01666 YCCS hypothetical me 98.9 9.5E-07 2.1E-11 100.9 30.1 294 56-392 6-308 (704)
19 TIGR01667 YCCS_YHJK integral m 98.8 1.2E-06 2.7E-11 100.1 27.6 293 56-393 6-309 (701)
20 PRK10631 p-hydroxybenzoic acid 97.6 0.093 2E-06 60.0 31.0 160 58-232 353-517 (652)
21 PF11168 DUF2955: Protein of u 96.3 0.21 4.6E-06 46.0 15.5 137 61-215 2-139 (140)
22 PF12732 YtxH: YtxH-like prote 82.8 5.5 0.00012 32.5 6.8 44 199-243 2-45 (74)
23 PF10011 DUF2254: Predicted me 74.0 50 0.0011 35.4 12.8 78 167-248 96-174 (371)
24 COG4980 GvpP Gas vesicle prote 70.3 16 0.00035 32.7 6.7 43 199-242 8-50 (115)
25 KOG4711 Predicted membrane pro 68.4 18 0.0004 41.3 8.2 168 178-373 363-540 (625)
26 PRK11677 hypothetical protein; 67.6 42 0.0009 30.9 8.9 43 199-241 7-50 (134)
27 PF12805 FUSC-like: FUSC-like 67.2 1.5E+02 0.0033 30.2 25.9 51 189-240 69-123 (284)
28 PF06081 DUF939: Bacterial pro 65.3 28 0.00062 32.0 7.6 41 88-129 99-139 (141)
29 COG5336 Uncharacterized protei 63.5 34 0.00074 30.3 7.1 29 107-135 46-74 (116)
30 PF10225 DUF2215: Uncharacteri 62.7 1.8E+02 0.0039 29.5 13.9 84 152-239 53-140 (249)
31 PF08893 DUF1839: Domain of un 62.2 37 0.00079 35.5 8.3 81 314-394 238-318 (319)
32 PF06496 DUF1097: Protein of u 61.4 1.3E+02 0.0029 27.6 15.2 71 86-158 19-89 (144)
33 PF13295 DUF4077: Domain of un 49.3 1.7E+02 0.0037 26.3 9.3 81 141-226 52-144 (175)
34 PF12841 YvrJ: YvrJ protein fa 48.7 40 0.00087 24.2 4.3 30 476-505 7-36 (38)
35 PF06295 DUF1043: Protein of u 47.0 1.6E+02 0.0034 26.7 9.0 50 199-249 3-53 (128)
36 TIGR00930 2a30 K-Cl cotranspor 46.5 3.8E+02 0.0083 32.6 14.7 27 101-128 140-166 (953)
37 TIGR03480 HpnN hopanoid biosyn 45.4 1.4E+02 0.003 35.7 10.8 20 200-219 835-854 (862)
38 PF11744 ALMT: Aluminium activ 44.1 82 0.0018 34.4 7.9 40 174-215 44-83 (406)
39 PRK09776 putative diguanylate 43.6 4.3E+02 0.0093 31.9 14.8 14 484-497 721-734 (1092)
40 PRK12821 aspartyl/glutamyl-tRN 43.5 3.5E+02 0.0076 30.0 12.3 30 100-129 94-123 (477)
41 PF13515 FUSC_2: Fusaric acid 43.1 62 0.0013 28.2 5.8 42 175-219 18-59 (128)
42 PRK09823 putative inner membra 40.9 2.9E+02 0.0064 25.6 9.6 91 110-215 12-103 (160)
43 PF00873 ACR_tran: AcrB/AcrD/A 38.8 8.1E+02 0.017 29.9 16.1 22 378-399 682-703 (1021)
44 TIGR00796 livcs branched-chain 38.5 5.4E+02 0.012 27.8 17.6 75 47-129 203-279 (378)
45 PRK11715 inner membrane protei 38.2 2E+02 0.0043 31.8 9.7 26 88-113 360-385 (436)
46 PF06123 CreD: Inner membrane 35.9 2.5E+02 0.0053 31.0 10.0 27 87-113 353-379 (430)
47 COG4956 Integral membrane prot 35.8 2.2E+02 0.0049 30.0 9.0 26 109-134 3-29 (356)
48 PF04286 DUF445: Protein of un 34.7 29 0.00063 36.2 2.7 20 111-130 344-363 (367)
49 COG4980 GvpP Gas vesicle prote 34.0 40 0.00086 30.3 2.9 21 114-134 8-28 (115)
50 PF05313 Pox_P21: Poxvirus P21 33.6 2.8E+02 0.006 26.9 8.6 14 196-209 142-155 (189)
51 PF02411 MerT: MerT mercuric t 32.9 3E+02 0.0065 24.7 8.4 25 197-221 88-112 (116)
52 TIGR00844 c_cpa1 na(+)/h(+) an 31.8 8.8E+02 0.019 29.0 14.0 24 193-216 207-230 (810)
53 PF04018 DUF368: Domain of unk 31.5 5.8E+02 0.013 26.1 16.0 72 58-130 54-129 (257)
54 PRK11412 putative uracil/xanth 31.5 7.1E+02 0.015 27.4 12.8 38 173-215 175-212 (433)
55 KOG3817 Uncharacterized conser 31.0 2.1E+02 0.0046 30.7 8.1 80 156-238 183-265 (452)
56 COG2211 MelB Na+/melibiose sym 30.3 6.8E+02 0.015 27.9 12.3 65 62-127 87-168 (467)
57 COG5006 rhtA Threonine/homoser 29.9 6.4E+02 0.014 26.1 11.9 55 57-114 41-95 (292)
58 PRK11103 PTS system mannose-sp 29.8 2.9E+02 0.0063 28.7 8.8 29 190-219 186-214 (282)
59 TIGR02865 spore_II_E stage II 29.4 1E+03 0.022 28.2 26.2 23 225-247 308-330 (764)
60 PRK11660 putative transporter; 28.9 3.5E+02 0.0075 30.7 10.2 14 111-124 318-331 (568)
61 COG0659 SUL1 Sulfate permease 28.4 3.1E+02 0.0067 31.2 9.6 20 105-124 281-300 (554)
62 PF03419 Peptidase_U4: Sporula 28.4 2.1E+02 0.0045 29.5 7.6 19 111-129 34-52 (293)
63 COG0555 CysU ABC-type sulfate 26.8 5.3E+02 0.012 26.7 10.0 29 192-220 128-156 (274)
64 PF03176 MMPL: MMPL family; I 26.7 6.7E+02 0.014 25.8 11.2 19 200-218 278-296 (333)
65 PF01770 Folate_carrier: Reduc 26.6 8.8E+02 0.019 26.6 12.2 33 100-132 278-310 (412)
66 TIGR00828 EIID-AGA PTS system, 26.0 4.6E+02 0.01 27.0 9.5 26 190-215 176-201 (271)
67 PRK09855 PTS system N-acetylga 24.9 4.1E+02 0.0088 27.3 8.8 96 99-215 99-196 (263)
68 PF03818 MadM: Malonate/sodium 24.6 56 0.0012 25.9 1.9 20 112-131 37-56 (60)
69 PF10031 DUF2273: Small integr 23.9 2.2E+02 0.0048 21.7 5.1 18 112-129 9-26 (51)
70 KOG1172 Na+-independent Cl/HCO 23.8 5.5E+02 0.012 30.8 10.5 39 175-213 452-490 (876)
71 PF03613 EIID-AGA: PTS system 23.6 5.2E+02 0.011 26.5 9.3 28 190-218 174-201 (264)
72 PF07698 7TM-7TMR_HD: 7TM rece 23.5 6.2E+02 0.013 23.9 9.5 25 109-133 78-102 (194)
73 PF10779 XhlA: Haemolysin XhlA 23.4 1.5E+02 0.0032 24.0 4.3 18 113-130 52-69 (71)
74 PF06160 EzrA: Septation ring 23.1 8.9E+02 0.019 27.5 12.0 52 349-400 167-218 (560)
75 PF14015 DUF4231: Protein of u 22.7 2.6E+02 0.0055 23.9 6.1 11 115-125 27-37 (112)
76 COG4325 Predicted membrane pro 22.7 1E+03 0.022 26.0 12.6 26 228-253 189-214 (464)
77 PRK15385 magnesium transport p 21.6 5.3E+02 0.011 25.9 8.7 70 60-131 4-76 (225)
78 PF11085 YqhR: Conserved membr 21.3 3.4E+02 0.0073 26.1 6.8 24 97-123 53-76 (173)
79 COG2733 Predicted membrane pro 21.0 39 0.00085 36.4 0.6 20 112-131 392-411 (415)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=2.3e-92 Score=744.66 Aligned_cols=404 Identities=54% Similarity=0.919 Sum_probs=377.6
Q ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 48 WKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLF 127 (541)
Q Consensus 48 w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i 127 (541)
|++|++||||++|++|+|+|++|+++++|++++|.+++.+++||++||++||+||+|+|+.||++|++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred HHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Q 009175 128 EYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCG 207 (541)
Q Consensus 128 ~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ 207 (541)
.++....|+.++++++++++|+++++++|.|++|.+|++|+||+.+|++||++|++++|++++.+.+|..|+.+|+||++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 99998888767899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHHHHHHhhhhHHHHH
Q 009175 208 ICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGYKAVLDSKSIDETL 287 (541)
Q Consensus 208 ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~r~~L~s~a~lesL 287 (541)
+|++||++|||.|++++||+.++++++++++++++|+++|+.+.+++.. +..+..+|+.+++|+++++|++++|+|
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~----~~~~~~~~~~~~~yk~vl~Sk~~eesL 236 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEIL----DYQQESDDPLLQGYKSVLNSKSQEESL 236 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccc----ccccccccHHHHhhhHHhCCcccHHHH
Confidence 9999999999999999999999999999999999999999998765411 111236789999999999999999999
Q ss_pred hhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 009175 288 ALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALFKDPCIRLANEVSKALMELANSIK 367 (541)
Q Consensus 288 ~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~e~~~l~~~~~~vL~~La~al~ 367 (541)
+++|+|||+||||+++|||++|.||++++|||+|++++||+|+++++|+|+++|++|+++|.+++.+++++|++|+.+++
T Consensus 237 ~~~A~WEP~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL~gcl~seiq~p~~~r~~~~~~~~~~~~e~~kvLrel~~~ik 316 (406)
T PF11744_consen 237 ANFARWEPPHGRFRFRHPWKQYLKIGALLRHCAYCVEALHGCLNSEIQAPPELRQKFQEECTRVSSESAKVLRELSNSIK 316 (406)
T ss_pred hhhhhhcccccCCccCCcHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCc-hhhhHHHHHHHHHHHHHHhhCCccccCCCCccchhhHHHHHHhhhhhhcccccccccccchhhhhhhhhhhc
Q 009175 368 SRRHCSP-EVLSDHLHEALQDLNTAIKSQPRLFLGSNSSQSSNLLALAAAHARQQKEHGVSLSSFKTDTSALLEWKSKRA 446 (541)
Q Consensus 368 ~~~~~~~-~~~~~~~~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (541)
+|+++++ ++++.++|+|+|+||.+|+++|+||++|++-
T Consensus 317 ~m~~~~~~~~~~~~~~~A~~~Lq~~l~~~~~ll~~s~~~----------------------------------------- 355 (406)
T PF11744_consen 317 TMTKSSSIDDHVANLKEAAEDLQSKLDSQSYLLLNSESP----------------------------------------- 355 (406)
T ss_pred hcccCCCchhHHHHHHHHHHHHHHHHHhCCccccCCchh-----------------------------------------
Confidence 9999998 7899999999999999999999999998830
Q ss_pred cchhhHHHHhhhhcccchhhh-hccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 447 SSERSKEAERKVLRPQLSKIA-ITGLEFSEALPFAAFASLLVEIVARLDNVIEEVEELG 504 (541)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~sll~e~v~~~~~~~~~~~el~ 504 (541)
+++.++++.++.. ++++|++++||+|||||||||+|+|+|+|+|+|||||
T Consensus 356 --------~~~~~~~~~~~~~~~~~~~~~~~l~lat~aSlLie~v~r~~~iv~~v~eLa 406 (406)
T PF11744_consen 356 --------ERSFLRPQSSKEAEWTSYELLEALPLATFASLLIEFVARLENIVEAVEELA 406 (406)
T ss_pred --------hhhhccccccccccccchhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 0122233334333 4789999999999999999999999999999999996
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=100.00 E-value=7.6e-70 Score=593.11 Aligned_cols=479 Identities=45% Similarity=0.720 Sum_probs=405.3
Q ss_pred HHHHHHHhhhhhhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHH
Q 009175 32 HMNVIGEKARRFPNLLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGL 111 (541)
Q Consensus 32 ~~~~~~~~~~~~~~~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl 111 (541)
.......|+.++.++.|+++++|||++.|++|+|+|++|++.++|..++|.+++.+++||++|+++|+++++|+|+.|++
T Consensus 67 k~~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kgl 146 (625)
T KOG4711|consen 67 KELELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGL 146 (625)
T ss_pred cccchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhH
Confidence 45566689999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchH
Q 009175 112 NRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENV 191 (541)
Q Consensus 112 ~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~ 191 (541)
+|.+||+.++.+|+.+.++....|..++++++++.+|+.++..+|++|+|.+|+ |+|+++||++||+++.+++++.+.+
T Consensus 147 nr~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~-y~y~~lIf~ltf~l~~vs~~r~~~~ 225 (625)
T KOG4711|consen 147 NRAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKA-YEYGFLIFILTFCLVEVSGYRSDYF 225 (625)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhc-cchhhhHHHHHhhhheecccchhHH
Confidence 999999999999999999988888447889999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHH------H-HHHHhcchhhHHhhhccCCCC
Q 009175 192 LRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEA------C-VNEYFNDSAEEVKINLMDKPS 264 (541)
Q Consensus 192 ~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~------~-v~~y~~~~e~~~~~~~~~~~~ 264 (541)
++.|+.|+.+|.+|..+|++|+.|+||.||+++||+..+.++..++.++++ | ..+|+. .+....++....++
T Consensus 226 ~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~-~~~i~~~s~~~~~~ 304 (625)
T KOG4711|consen 226 LELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFC-VEKIEILSIPTFYK 304 (625)
T ss_pred HHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchhee-ehhhhhcchhhhhh
Confidence 999999999999999999999999999999999999999999999999996 4 445543 32111211111122
Q ss_pred -CCCchhHHHHHHHHhhhhHHHHHhhhcccCCCCC-CcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHH
Q 009175 265 -DDEDPIYKGYKAVLDSKSIDETLALYASWEPRHS-RHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRA 342 (541)
Q Consensus 265 -a~~d~~~~~~r~~L~s~a~lesL~~~A~~Ep~~g-r~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~ 342 (541)
+..++.+++|+++|+++..+++++++|.|||+|| .++++|||++|.+++.++|+|++++++||+|+.+++|+|.++|.
T Consensus 305 s~~~~~~~~Gy~svl~s~s~ee~l~~~A~Wep~hG~~~~f~~Pw~~Yvk~~~~~r~ca~~i~alh~~l~s~~qap~~~~~ 384 (625)
T KOG4711|consen 305 SAAWYPLYNGYWSVLQSKSQEERLANFAIWEPPHGPYFTFRHPWKNYVKLGGALRQCAFIIMALHGCLLSEIQAPRDLRN 384 (625)
T ss_pred hcchhhhhcchhHHhhhhhHHHHHHHHheecCCCCCceeeecchhHeeehhhHHHHHHHHHHHhcccccccccCcHHHHH
Confidence 2378899999999999999999999999999999 56788999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hhhhHHHHHHHHHHHHHHhhCCccccCCCCccchhhHHHHHHh-hh
Q 009175 343 LFKDPCIRLANEVSKALMELANSIKSRRHCSP--EVLSDHLHEALQDLNTAIKSQPRLFLGSNSSQSSNLLALAAAH-AR 419 (541)
Q Consensus 343 ~~~~e~~~l~~~~~~vL~~La~al~~~~~~~~--~~~~~~~~~A~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 419 (541)
.+..+|++++.++.++++.++.++++|+++++ +.+...++.|.++||..|+++|++++++++|...|.+...+.. ..
T Consensus 385 ~~~~~l~rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~~A~~~L~~~ids~p~l~v~~~~~~~~~~~~~~~~~~~~ 464 (625)
T KOG4711|consen 385 KFRLTLRRVAIEISKVLRPFRAKVELMYKLSSALDILLQYVTVADRELQRNIDSNPTLLVNSESWISSNLQAARELLNEV 464 (625)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhccCcchHhhcccchhhhhHHHHHHHhhhh
Confidence 99999999999999999999999999999998 7788999999999999999999999999999776665444321 11
Q ss_pred hhhcccc-------------ccccc--cc-----------------------chhh---hhhhhhhhccchhhHHHHhhh
Q 009175 420 QQKEHGV-------------SLSSF--KT-----------------------DTSA---LLEWKSKRASSERSKEAERKV 458 (541)
Q Consensus 420 ~~~~~~~-------------~~~~~--~~-----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~ 458 (541)
..|.+.+ ++.+. .. ++.. ...|.+.. .-....+...
T Consensus 465 ~~e~~~~~~~~~ek~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n---~~~s~~~~~~ 541 (625)
T KOG4711|consen 465 NHEPNLKGTFPVEKYNELIHKLLSLGILLEVGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSN---SIRSKNPIPR 541 (625)
T ss_pred ccchhhcccccchhHHHHHHHhhcchhhhhccccccchhhHHHHHhhcccccchhhhhhhhhhhhhc---ccccCCCCcc
Confidence 1111100 11110 00 0000 00111110 0000112334
Q ss_pred hcccchhhhhccccccccCcHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCcCCCCC
Q 009175 459 LRPQLSKIAITGLEFSEALPFAAFAS-LLVEIVARLDNVIEEVEELGRIACFKEFNPG 515 (541)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~s-ll~e~v~~~~~~~~~~~el~~~a~f~~~~~~ 515 (541)
++|+++...++.+|+.+++++|+|+| +|+|+|+|+++++++++||+++|+|++++..
T Consensus 542 ~~p~~~~~~~~~~~~se~l~~a~fas~ll~~~~arl~~vv~~~~el~~~a~f~~~~~~ 599 (625)
T KOG4711|consen 542 VVPILSRATSKSYESSEALNLATFASNLLLEFVARLDNVVSAVEELSDKANFKEYDSC 599 (625)
T ss_pred ccccccccccccccCchhcCcccccchHHHHHHHHHhhhhhhhhhhhhhhhhcccccc
Confidence 56666664457899999999999999 9999999999999999999999999988764
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.94 E-value=9.8e-25 Score=246.51 Aligned_cols=281 Identities=15% Similarity=0.194 Sum_probs=189.9
Q ss_pred hhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHH
Q 009175 43 FPNLLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGS 122 (541)
Q Consensus 43 ~~~~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~ 122 (541)
...++.+....++..++||+|++++++++.+++.. .++ ++|||+++|+++|++|+.|+|..|+++|++||++|++
T Consensus 368 ~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~----l~l-~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~l 442 (701)
T TIGR01667 368 ILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMG----TAL-HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLV 442 (701)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH----hCC-CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566677899999999999998776544 344 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Q 009175 123 LAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTI 202 (541)
Q Consensus 123 la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I 202 (541)
+|+++.++.+... + .++ +. .++++ ++|. ..+.| |++.++++|..+++.......+.++++..|+++|
T Consensus 443 lg~~l~~l~p~~~--~-~l~--l~-v~~~~-~~~~----~~~~~--Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DT 509 (701)
T TIGR01667 443 IGVALHFLIPSLE--G-QLT--LM-VITGV-AFFA----FRSKN--YGWATVFITLLVLLCFNLLGLDGEQYILPRLIDT 509 (701)
T ss_pred HHHHHHHHcCcHH--H-HHH--HH-HHHHH-HHHH----HHHhh--HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 9999887765431 1 111 11 12222 2221 11334 5555567787665554443435678999999999
Q ss_pred HHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHH-HHHHHHhhh
Q 009175 203 AIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYK-GYKAVLDSK 281 (541)
Q Consensus 203 ~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~-~~r~~L~s~ 281 (541)
+|||++|++++.++||.|.+..+++.+.+.++..++|++.++++|..++. ++..|+ ..|+..++.
T Consensus 510 liG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~--------------~~~~yr~aRr~a~~a~ 575 (701)
T TIGR01667 510 LIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKP--------------DDLAYRIARRNAHNTD 575 (701)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--------------chhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999888765321 111122 223455667
Q ss_pred hHHHHHhhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHHHHHHHHHHHHHHHHH
Q 009175 282 SIDETLALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALFKDPCIRLANEVSKALME 361 (541)
Q Consensus 282 a~lesL~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~e~~~l~~~~~~vL~~ 361 (541)
+.+++..+.+..||++.+ ..++....+....+.+...+.+|..+ +..... ++... .+.+.+..+...|..
T Consensus 576 a~l~~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~ll~~isal~a~-r~~~~~-~~~~~----~~~~~~~~~~~~l~~ 645 (701)
T TIGR01667 576 AALSTTLSNMMQEPAFNS----HYLEDGFRLLTLSHTLLSYISALGAH-RERLLN-PELAA----ELLQACEIVAKAIQR 645 (701)
T ss_pred HHHHHHHHHHHhCCCCch----hhHHHHHHHHHHHHHHHHHHHHHHhc-ccccCC-hhHHH----HHHHHHHHHHHHHHH
Confidence 778888888999998652 23333333334444444444444331 111122 22222 334444556666666
Q ss_pred HHHH
Q 009175 362 LANS 365 (541)
Q Consensus 362 La~a 365 (541)
+...
T Consensus 646 ~~~~ 649 (701)
T TIGR01667 646 CQAR 649 (701)
T ss_pred HHHh
Confidence 6666
No 4
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.94 E-value=1.1e-24 Score=245.73 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 009175 57 RVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGH 136 (541)
Q Consensus 57 ~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~ 136 (541)
+++|++|+++|++++..+++. .++ ++|+||++||++|++|+.|+++.|+++|++||++|+++|+++..++.+.+.
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~----l~l-~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~ 75 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFW----LQL-PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPL 75 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHH----hCC-CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence 478999999999998877664 466 899999999999999999999999999999999999999999988877642
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 137 IFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAE-NVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 137 ~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~-~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
.+++++ .++.++|.|+..+ .+..+.|+++++++|.++|.+.+..+| +.++++++|+.+|+||++|+.+|+.+
T Consensus 76 ---l~~~~l--al~i~~c~~~~~~--~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l 148 (650)
T PF04632_consen 76 ---LFLLAL--ALWIGLCLYLSLL--DRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSML 148 (650)
T ss_pred ---HHHHHH--HHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333 3333455565432 234468999999999999999887665 58999999999999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHHHHHHhhhhHHHHHhhhcccCC
Q 009175 216 IFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGYKAVLDSKSIDETLALYASWEP 295 (541)
Q Consensus 216 i~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~r~~L~s~a~lesL~~~A~~Ep 295 (541)
+||.++++.+++.+.+.+...+++++...+ +.+ ..+. ..+.......+++.+..++.+|.
T Consensus 149 ~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~----~~~-------------~~~~---~~~~l~~~~~~l~~~~~~~~~e~ 208 (650)
T PF04632_consen 149 FFPQRARRQLRRRLAQRLADLARWLAALLD----GDP-------------DPAA---ERRRLARDIAALESLLSHARYES 208 (650)
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHhC----CCc-------------ccch---HHHHHHHHHHHHHHHHhhccccC
Confidence 999999999999999999999988764332 111 0111 23345567778899999999998
Q ss_pred CCC
Q 009175 296 RHS 298 (541)
Q Consensus 296 ~~g 298 (541)
+..
T Consensus 209 ~~~ 211 (650)
T PF04632_consen 209 PRL 211 (650)
T ss_pred chh
Confidence 654
No 5
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.94 E-value=3.3e-24 Score=241.60 Aligned_cols=303 Identities=17% Similarity=0.188 Sum_probs=203.5
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHH
Q 009175 46 LLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAF 125 (541)
Q Consensus 46 ~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~ 125 (541)
++.+....|+..++||+|++++++++.+++.+ .++ ++|||+++|+++|++|+.|+|..|+.+|++||++|+++|.
T Consensus 369 ~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~----l~l-~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~ 443 (704)
T TIGR01666 369 RIFSHFTFESPLFRHAVRLSIVLFLGYAIIQF----FGF-NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGS 443 (704)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHH----hCC-CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556667899999999999998776543 344 8999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Q 009175 126 LFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIG 205 (541)
Q Consensus 126 ~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IG 205 (541)
++.++.+... + .++ +. .+.+.+++++ ...||.++ ++++|..+++...... +.++++..|+++|+||
T Consensus 444 ~ll~l~p~~~--~-~l~--li-v~~~~l~~~~-----~~~~Y~~a--~~fiT~~vll~~~l~g-~~~~~~~~Rl~dTlIG 509 (704)
T TIGR01666 444 PLLYFNPSLE--L-QLV--LV-VLTGVLFFAF-----RSNNYSFA--TFFITLLVLLCFNVLG-EGAAVLLPRLLDTLIG 509 (704)
T ss_pred HHHHHhccHH--H-HHH--HH-HHHHHHHHHH-----HHHhHHHH--HHHHHHHHHHHHHccc-chHHHHHHHHHHHHHH
Confidence 9988765531 1 111 11 1112111111 12445554 4567776665544433 4678999999999999
Q ss_pred HHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhH-HHHHHHHhhhhHH
Q 009175 206 CGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIY-KGYKAVLDSKSID 284 (541)
Q Consensus 206 i~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~-~~~r~~L~s~a~l 284 (541)
|++++++++++||.|.++++++.+++.++..++|++.++++|..++. ++..| ...|+..++.+.+
T Consensus 510 ~~iAl~a~~li~P~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~--------------~~~~yr~aRR~a~~~~a~l 575 (704)
T TIGR01666 510 CAIAWAAVSYIWPDWQYLQLDKVSHQALRANAVYLLHIISQYQFGKS--------------DDLKYRIARRNAHNYDAAL 575 (704)
T ss_pred HHHHHHHHHHhCcchHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------------chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888765432 12222 2334556677778
Q ss_pred HHHhhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009175 285 ETLALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALFKDPCIRLANEVSKALMELAN 364 (541)
Q Consensus 285 esL~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~e~~~l~~~~~~vL~~La~ 364 (541)
++....+.-||++.+ ..++.--++....+.....+.+|..+ +..+..+ .+...+.+.+..+...|..++.
T Consensus 576 ~~~~~~m~~EP~~~~----~~~~~~~~ll~~~~~llsyisaLg~~-r~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~ 645 (704)
T TIGR01666 576 STTVSNMNNEPVKYK----AYLQKGFRLLKLNHSLLSYISALGAH-RDRLKNL-----QQTAQFLDGFYPVAKKLIYTLE 645 (704)
T ss_pred HHHHHHHHhCCCcch----hhHHHHHHHHHHHHHHHHHHHHHHhC-HhhCCCh-----HHHHHHHHHHHHHHHHHHHHhh
Confidence 888888889998652 33333333333333333344444332 1122221 2333455566667777777776
Q ss_pred HHhcCCCCCchhhhHHHHHHHHHHHHHHhhC
Q 009175 365 SIKSRRHCSPEVLSDHLHEALQDLNTAIKSQ 395 (541)
Q Consensus 365 al~~~~~~~~~~~~~~~~~A~~~L~~~i~~~ 395 (541)
..... ++..-.+.+++.++|.+.+++.
T Consensus 646 ~~~~~----~~~~~~~~~~~~~~~~~~l~~~ 672 (704)
T TIGR01666 646 HIEEI----PEAIFNQQQESIETLELRKQEM 672 (704)
T ss_pred ccccc----ccchhhhHHHHHHHHHHHHhhc
Confidence 65421 1223346666667777776653
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.92 E-value=1.4e-22 Score=225.80 Aligned_cols=218 Identities=15% Similarity=0.209 Sum_probs=174.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhc---------ccChhHHHHHHHHHHHHHHHHHH
Q 009175 52 REDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVL---------EFTAGATFCKGLNRGLGTLLAGS 122 (541)
Q Consensus 52 ~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~---------~psvG~Tl~kgl~RilGTliGa~ 122 (541)
..++++++|++|+++|++++..+++. .++ ++|+||++||++|+ +|..|.++.|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL~ia~~----l~L-~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLALFVGFH----FQL-ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHH----CCC-CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 34567899999999999998776654 566 89999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHHH
Q 009175 123 LAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAE-NVLRIAHDRFYT 201 (541)
Q Consensus 123 la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~-~~~~~A~~R~~~ 201 (541)
.|+++..++.+.+. .++++++ ++.++|+|...+ .+.+..|++.++++|.++|.+....++ ..|++|+.|+.+
T Consensus 78 ~~l~l~~~f~~~p~---l~~l~l~--lWig~c~~~s~l--~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~E 150 (652)
T PRK10631 78 AALVIIIATIRAPL---LMILLCC--IWAGFCTWISSL--VRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSE 150 (652)
T ss_pred HHHHHHHHhcCChH---HHHHHHH--HHHHHHHHHHHh--ccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 99999988877641 2333333 334556665432 244578999999999999999987765 589999999999
Q ss_pred HHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHHHHHHhhh
Q 009175 202 IAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGYKAVLDSK 281 (541)
Q Consensus 202 I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~r~~L~s~ 281 (541)
|+||++|+.+|+.+++|.+.+..++..+.+.+.+..++++.+... .+. +.........+...
T Consensus 151 i~iGi~ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l~~----~~~--------------~~~~~~~~~L~~di 212 (652)
T PRK10631 151 IVIGIVCAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKH----GDK--------------EEVDKAWGDLVRRT 212 (652)
T ss_pred HHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHhcc----Ccc--------------chhhHHHHHHHHHH
Confidence 999999999999999999999999999999999888887755421 110 01112333466777
Q ss_pred hHHHHHhhhcccCCCCCC
Q 009175 282 SIDETLALYASWEPRHSR 299 (541)
Q Consensus 282 a~lesL~~~A~~Ep~~gr 299 (541)
.++|.+..++.||.++.|
T Consensus 213 ~~le~lr~~~~~e~~~~r 230 (652)
T PRK10631 213 TALNGMRSNLMMESSRWQ 230 (652)
T ss_pred HHHHHHHHhhccCCcchh
Confidence 889999999999987654
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.87 E-value=2.9e-19 Score=198.57 Aligned_cols=243 Identities=16% Similarity=0.124 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHH-------hhhhhhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHh
Q 009175 26 KEKLKKHMNVIGE-------KARRFPNLLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVV 98 (541)
Q Consensus 26 ~~~~~~~~~~~~~-------~~~~~~~~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV 98 (541)
-+.+++.+..|.+ +-++-....|.-...||+.++||+|+.+|++++..++.. .+| ++++|+++|+++|
T Consensus 312 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dA~tNp~~~R~ALRt~lAa~La~~i~~~----l~w-~~pyWamLTvvIV 386 (683)
T PRK11427 312 LENICQTLLQLGQMDPNTPPTPAAKPPSMVADAFTNPDYMRYALKTLLACLICYTFYSG----VDW-EGIHTCMLTCVIV 386 (683)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCccccchhhHHhccCHHHHHHHHHHHHHHHHHHHHHHH----cCC-CccHHHHHHHHHH
Confidence 5667777777765 112223356777888999999999999999998776554 466 8999999999999
Q ss_pred cccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 009175 99 LEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTF 178 (541)
Q Consensus 99 ~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~ 178 (541)
++|+.|.|..|+++|++||++|+++|+++..+..+... ..+.++ +.++.+.++..|+. ....++.|+++.+++|+
T Consensus 387 sqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~-~~~~Ll-llllp~~llg~wv~---~~~~R~sYa~~~ag~T~ 461 (683)
T PRK11427 387 ANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLD-NIVELL-FVLAPIFLLGAWIA---TSSERSSYIGTQMVVTF 461 (683)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cHHHHH-HHHHHHHHHHHHHH---HhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999998865543321 122221 11121111222221 11345778888888888
Q ss_pred HHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhh
Q 009175 179 NLITVSSYRAE-NVLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKI 257 (541)
Q Consensus 179 ~lV~l~~~~~~-~~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~ 257 (541)
.++.+.....+ .....+.+|+++|++|++++.+++.++||.|.+..+++.+.+.++.++++++... +...
T Consensus 462 ~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~~--------~~~~- 532 (683)
T PRK11427 462 ALATLENVFGPVYDLVEIRDRALGILIGTVVSAVIYTFVWPESEARTLPQKLAGALGMLSKVLRIPR--------QQEV- 532 (683)
T ss_pred HHHHhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhccc--------ccch-
Confidence 88776443222 2345677899999999999999999999999999999999999999987765311 0000
Q ss_pred hccCCCCCCCchhH-HHHHHHHhhhhHHHHHhhhcccCC
Q 009175 258 NLMDKPSDDEDPIY-KGYKAVLDSKSIDETLALYASWEP 295 (541)
Q Consensus 258 ~~~~~~~a~~d~~~-~~~r~~L~s~a~lesL~~~A~~Ep 295 (541)
..+..| +..+.+..+.+++|.+.....+||
T Consensus 533 --------~~~~~~~~~R~~l~~a~~~le~~~~rl~~Ep 563 (683)
T PRK11427 533 --------TALRTYLQIRIGLHAAFNACEEMCQRVALER 563 (683)
T ss_pred --------hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 011111 111233445677788888899999
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.74 E-value=1.1e-15 Score=173.80 Aligned_cols=183 Identities=21% Similarity=0.273 Sum_probs=141.6
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 50 VGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFT-AGATFCKGLNRGLGTLLAGSLAFLFE 128 (541)
Q Consensus 50 ~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~ps-vG~Tl~kgl~RilGTliGa~la~~i~ 128 (541)
..+.++..++||+|++++++++..+... .+| ++|+|+++|+++|++|+ +|+|..++.+|+.||++|+++|+++.
T Consensus 347 ~~~~~~~alr~a~R~ala~~~~~~~~~~----~~w-~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l 421 (674)
T COG1289 347 HHRLNSPALRHALRTALALLLGYAFWLA----LGW-PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVL 421 (674)
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHH----hcC-CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566678899999999999997765543 566 79999999999999999 99999999999999999999999998
Q ss_pred HHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Q 009175 129 YIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGI 208 (541)
Q Consensus 129 ~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~i 208 (541)
++..+..+. .+.++.+..++ ++++++ ..+|.++. +.+|+++.+..+....+...+...|++++++|+++
T Consensus 422 ~~~~p~~~~-~l~~l~~~~~l---~~~~~~-----~~~~~~a~--~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lI 490 (674)
T COG1289 422 LLLLPLIPG-LLLLLLLAALL---FAAGIR-----LAKYRLAT--LGITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLI 490 (674)
T ss_pred HHhcccchh-HHHHHHHHHHH---HHHHHH-----hcchhHHH--HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHH
Confidence 877665421 12221111111 112221 13466654 46666666666655557789999999999999999
Q ss_pred HHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009175 209 CLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYF 248 (541)
Q Consensus 209 aliVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~ 248 (541)
++++.+++||.|....+++...+.++...+++......+.
T Consensus 491 a~~~a~~v~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~~~ 530 (674)
T COG1289 491 ALALAFLVWPLWRPRRLRRALRRALRALRRDLASALSREP 530 (674)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999998886655443
No 9
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.66 E-value=1.2e-13 Score=154.10 Aligned_cols=171 Identities=11% Similarity=0.037 Sum_probs=130.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 53 EDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIAN 132 (541)
Q Consensus 53 ~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~ 132 (541)
..|.+.-..+|+.++.+|+..+.+. .+. ++++|+..+|++|.+|..|.|..|++.|++||++|+.+++++.-++.
T Consensus 25 ~~P~r~~~~~r~~~a~~L~l~i~~~----l~~-P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v 99 (683)
T PRK11427 25 RRPGRVPQTLQLWVGCLLVILISMT----FEI-PFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSY 99 (683)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHH----cCC-CHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466666779999999997655543 333 89999999999999999999999999999999999999999987776
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH--HHhccCCchHHHHHHHHHHH-----HHHH
Q 009175 133 ESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLI--TVSSYRAENVLRIAHDRFYT-----IAIG 205 (541)
Q Consensus 133 ~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV--~l~~~~~~~~~~~A~~R~~~-----I~IG 205 (541)
+.+ .+..+++.++.++|.|+-- .++..|.+.++.+|. ++ .+.+..+ ..-...|..+ |.+|
T Consensus 100 ~~P-----~l~~l~ialw~~~~lyl~r----~~rl~yvf~lag~ta-ii~~~f~~v~~---~~E~~~R~~e~~w~~i~~g 166 (683)
T PRK11427 100 GYP-----LIRLIIAGPILMGCMFLMR----THRLGLVFFAVAIVA-IYGQTFPAMLD---YPEVVVRLTLWCIVVGLYP 166 (683)
T ss_pred cch-----HHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHHHH-HHHhhcccccc---hHHHHHHHHHHHHHHHHHH
Confidence 653 3333444444556667632 244688888888883 44 3333333 2223778888 9999
Q ss_pred HHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHH
Q 009175 206 CGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIE 241 (541)
Q Consensus 206 i~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~ 241 (541)
++|+.+||.++||.+.+..++..+...+++...++.
T Consensus 167 i~ca~lV~~l~~P~~~~~~l~~~l~~~l~~a~~~l~ 202 (683)
T PRK11427 167 TLLMTLIGVLWFPSRAINQMHQALNDRLDDAISHLT 202 (683)
T ss_pred HHHHHHHHhHhCcCChHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998887665543
No 10
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.65 E-value=2.2e-13 Score=141.50 Aligned_cols=161 Identities=22% Similarity=0.292 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCch
Q 009175 58 VIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHI 137 (541)
Q Consensus 58 ~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~ 137 (541)
....+|+|+|++|+.+++.+ .++ +.+..|++++++.++||...++.++++|++|+++|+++|.++.++++.+
T Consensus 10 g~RtlKt~ia~~La~~ia~~----l~~-~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~--- 81 (332)
T COG4129 10 GARTLKTGLAAGLALLIAHL----LGL-PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN--- 81 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hCC-CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc---
Confidence 35789999999998776653 455 7899999999999999999999999999999999999999999888654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 009175 138 FRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLIIF 217 (541)
Q Consensus 138 ~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~li~ 217 (541)
|+.+|+.+.++..++..++ ..-|.....++...+++ +...+.++... |+++++||+++|++||.++.
T Consensus 82 --~~~~~v~~~i~i~~~~~~~--------~~~g~~~~~~~~~~ii~-~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~ 148 (332)
T COG4129 82 --PIAFGVVLLIIIPLLVLLK--------LENGVVPITVGVLHILV-AAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMP 148 (332)
T ss_pred --HHHHHHHHHHHHHHHHHHh--------cccchhHHHHHHHHHHH-HcccchhHHHH--HHHHHHHHHHHHHHHhhhcC
Confidence 4666665555555544332 23333333344333333 33334444444 99999999999999999999
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHH
Q 009175 218 PNWSGEDLHNSTVAKFEGLAKSIE 241 (541)
Q Consensus 218 P~~a~~~L~~~la~~l~~la~~l~ 241 (541)
|+. .+++....+........+.
T Consensus 149 ~~~--~~~~~~~~kv~~~~~~il~ 170 (332)
T COG4129 149 PPD--YELKLYRAKVEAILASILW 170 (332)
T ss_pred Cch--HHHHHHHHHHHHHHHHHHH
Confidence 887 5555555555555555444
No 11
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.59 E-value=2.8e-14 Score=127.94 Aligned_cols=114 Identities=27% Similarity=0.431 Sum_probs=87.9
Q ss_pred CCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 009175 86 ENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKK 165 (541)
Q Consensus 86 ~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~ 165 (541)
+|++|+++|++++++|+.|++..++.+|++||++|+++|++++.+.+++ + ... +.+++..++..|.+ +
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~-----~- 79 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN---Y-VLI--LIVFLLMFLIFYFL-----S- 79 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---H-HHH--HHHHHHHHHHHHHH-----h-
Confidence 7999999999999999999999999999999999999999999877654 1 111 22333333333321 2
Q ss_pred cchHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHHHHHHHHHHHHHH
Q 009175 166 NYDYGVVIFLLTFNLITVSSYR---AENVLRIAHDRFYTIAIGCGICLFM 212 (541)
Q Consensus 166 ~y~yg~~i~~lT~~lV~l~~~~---~~~~~~~A~~R~~~I~IGi~ialiV 212 (541)
+.|+...+++|+.++++.++. ..+.++.+..|+.++++|+++++++
T Consensus 80 -~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 80 -KNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 334555578888888877763 4567899999999999999999874
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.50 E-value=7.8e-13 Score=121.98 Aligned_cols=136 Identities=25% Similarity=0.430 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 009175 60 HAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFR 139 (541)
Q Consensus 60 ~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~ 139 (541)
..+|+++|.+++...+.+ .+. +++++|.+++++++|||..+|++.+++|+.|+++|+++|+++..+.+.+
T Consensus 6 r~iKtaiA~~la~~ia~~----l~~-~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~----- 75 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQL----LGL-QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYN----- 75 (141)
T ss_pred HHHHHHHHHHHHHHHHHH----HCC-CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-----
Confidence 568999999997665533 243 7899999999999999999999999999999999999999998887554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009175 140 AVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLII 216 (541)
Q Consensus 140 ~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~li 216 (541)
++.+++.+++....+..++ ..-+.....+++..++. ....+ +..+..|+.++++|+.++++||.++
T Consensus 76 ~~~~~l~v~i~i~~~~~l~--------~~~~~~~a~v~~~~i~~--~~~~~-~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 76 PLSIGLAVIITIPICNWLK--------LGEGIIVAAVTFVHILL--SGSDS-FSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHhC--------CCCeehHHHHHHHHHHH--cCCcc-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555444444332 22233334444433333 23334 4449999999999999999999864
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.49 E-value=1.9e-11 Score=139.29 Aligned_cols=164 Identities=23% Similarity=0.238 Sum_probs=123.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 009175 56 RRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESG 135 (541)
Q Consensus 56 r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g 135 (541)
.+++|++|+.+|++++..+.|. .+. +++.|+++|+.++++|..|+.+.|++.|++||++|..++.++..+..+.+
T Consensus 9 ~~~~~~lr~~~a~~la~~~~~~----~~l-~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p 83 (674)
T COG1289 9 ADWRYALRTFLAACLALALAFL----LGL-PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEP 83 (674)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH----cCC-CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCc
Confidence 4699999999999998777765 444 79999999999999999999999999999999999999999987777765
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhc--cCCc-hHHHHHHHHHHHHHHHHHHHHHH
Q 009175 136 HIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSS--YRAE-NVLRIAHDRFYTIAIGCGICLFM 212 (541)
Q Consensus 136 ~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~--~~~~-~~~~~A~~R~~~I~IGi~ialiV 212 (541)
. +++++++++ ++.+..+...+ .....|+++++++|+.++. +. +..+ ..+..+++|+..+++|+.|+-.+
T Consensus 84 ~---~f~~~~~~~-~~l~~~~~~~~---~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~ 155 (674)
T COG1289 84 W---LFLLLLTLW-LGLCTAIGSLY---RTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVV 155 (674)
T ss_pred H---HHHHHHHHH-HHHHHHHHHhh---ccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2 333333322 22232232222 2335788888889988877 32 2222 37999999999999999999988
Q ss_pred HhhccCCcchhHHHHHHHHH
Q 009175 213 SLIIFPNWSGEDLHNSTVAK 232 (541)
Q Consensus 213 s~li~P~~a~~~L~~~la~~ 232 (541)
....+|......|-+.+...
T Consensus 156 ~~~~~~~~~~~~L~~~l~~~ 175 (674)
T COG1289 156 PLLESPSRLYQALANYLEAK 175 (674)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 88777766655555544443
No 14
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=99.46 E-value=2.5e-10 Score=124.65 Aligned_cols=270 Identities=17% Similarity=0.179 Sum_probs=177.0
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhc-ccChhHHHHHHHHHHHHHHHHHHH
Q 009175 45 NLLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVL-EFTAGATFCKGLNRGLGTLLAGSL 123 (541)
Q Consensus 45 ~~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~-~psvG~Tl~kgl~RilGTliGa~l 123 (541)
...|-..+.|.+.++--+|.+++.+++.+++.+.+....+|+.+|.++|..+++. .-.+|..+...+.=++|+++|...
T Consensus 3 ~p~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~ 82 (459)
T PF10337_consen 3 LPAWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAW 82 (459)
T ss_pred CchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3457767778999999999999999999999888776656888999888776654 347788888888999999999998
Q ss_pred HHHHHHHhhcc---------------------C-ch-hH---------------HHHHHHHHHHHHHHHHHHHHhhhccc
Q 009175 124 AFLFEYIANES---------------------G-HI-FR---------------AVFIGSAVFLVGAAATYMRFIPYIKK 165 (541)
Q Consensus 124 a~~i~~l~~~~---------------------g-~~-~~---------------~v~lgl~vfi~~~~~~y~r~~~~~k~ 165 (541)
|++..+++... + +. .. -++.++++|+..++..|+|.. .+
T Consensus 83 ~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~---~p 159 (459)
T PF10337_consen 83 GLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAK---NP 159 (459)
T ss_pred HHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHh---Cc
Confidence 88887766322 1 00 00 033334444443444444432 12
Q ss_pred cchHHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 009175 166 NYDYGVVIFLLTFNLITVSSYRAEN--VLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEAC 243 (541)
Q Consensus 166 ~y~yg~~i~~lT~~lV~l~~~~~~~--~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~ 243 (541)
++..+.+++++..++.+.++...+. ...++..=+.-.++|+++++++|++|||.+.+..+.+.+.+.+..+...++.
T Consensus 160 ~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~- 238 (459)
T PF10337_consen 160 KLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDA- 238 (459)
T ss_pred chHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHH-
Confidence 2444444444444444444443333 3444444456789999999999999999999999999999999888888774
Q ss_pred HHHHhcchhhHHhhhccCCCCCCCchhHHHHHH-HHhhhhHHHHHhhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHH
Q 009175 244 VNEYFNDSAEEVKINLMDKPSDDEDPIYKGYKA-VLDSKSIDETLALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYT 322 (541)
Q Consensus 244 v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~r~-~L~s~a~lesL~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~ 322 (541)
-..|+...++... . +...-..++..+. +.+....++.-+.+++.|..-| +++-+.|..+...+|+....
T Consensus 239 ~~~~l~~~~~~~~---~---~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~g----rl~~~Dl~~i~~~lr~l~~~ 308 (459)
T PF10337_consen 239 QRNFLQSSEPSDE---F---DAKSLKKLKATKAKLRALYAKLQAALRFLKLEISYG----RLSPDDLKPIFSLLRSLMIP 308 (459)
T ss_pred HHHHHhCCCCCCc---c---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHeee----cCCHHHHHHHHHHHHHHHHH
Confidence 3456654322110 0 0000012222222 2234466777788999999865 67778888888888876655
Q ss_pred HHHHHH
Q 009175 323 VVALHG 328 (541)
Q Consensus 323 l~aL~~ 328 (541)
+..|..
T Consensus 309 ~~gL~~ 314 (459)
T PF10337_consen 309 LSGLSS 314 (459)
T ss_pred HHHHHH
Confidence 544443
No 15
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=99.35 E-value=1.3e-10 Score=115.57 Aligned_cols=148 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHHHHHHhhhhHHHHHhhhcccCC
Q 009175 216 IFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGYKAVLDSKSIDETLALYASWEP 295 (541)
Q Consensus 216 i~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~r~~L~s~a~lesL~~~A~~Ep 295 (541)
++|++++..+|+.+++.+..++++|..++..+....+..+. .. .+..+...+.+.++......++.++.+++|||
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep 75 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDG--HI---DAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEP 75 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc--cc---hhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence 57999999999999999999999999777666553211111 11 01233455666667778889999999999999
Q ss_pred CCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC-ChhHHHHh----HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009175 296 RHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQT-PRSVRALF----KDPCIRLANEVSKALMELANSIKSRR 370 (541)
Q Consensus 296 ~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~-p~~~r~~~----~~e~~~l~~~~~~vL~~La~al~~~~ 370 (541)
+.+ |+||.+.|.++ +..|..+++.|+......... |.+.+..+ ....+++.+++..+|..++++++++.
T Consensus 76 ~l~---G~FP~~~Y~~l---~~~~~~il~~l~~l~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~i~~vl~~ls~al~~g~ 149 (229)
T PF10334_consen 76 SLK---GRFPKETYQRL---LELCQNILDLLSLLSYVSTRLEPSEWRERLLRRTGWLRPELIGDIFSVLYMLSSALRTGQ 149 (229)
T ss_pred CCC---CCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Confidence 965 89999999966 555555565555533222222 54444443 34567888999999999999999999
Q ss_pred CCCc
Q 009175 371 HCSP 374 (541)
Q Consensus 371 ~~~~ 374 (541)
|+|+
T Consensus 150 pLP~ 153 (229)
T PF10334_consen 150 PLPP 153 (229)
T ss_pred CCCc
Confidence 9875
No 16
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.19 E-value=4.2e-08 Score=111.17 Aligned_cols=174 Identities=20% Similarity=0.126 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhc--ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 009175 56 RRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVL--EFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANE 133 (541)
Q Consensus 56 r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~--~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~ 133 (541)
..+++++|+++++.+++++... .+| +.|.-+++++.++. -.+.++...+...++.|+++|+++|+++.++.-+
T Consensus 338 ~A~~~alra~la~~~~~l~Wi~----t~W-~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP 412 (650)
T PF04632_consen 338 LALRNALRAFLAILIAGLFWIA----TGW-PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLP 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cCC-ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678999999999998876544 577 77888888777766 6788899999999999999999999998775544
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 134 SGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMS 213 (541)
Q Consensus 134 ~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs 213 (541)
.-+.+....+.++.+++ +..|. ..++++.+..+-++++|.+.+..+.....-+.....+.+.+++|+++++++.
T Consensus 413 ~~~~f~~L~l~l~~~l~--~~~~~----~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~ 486 (650)
T PF04632_consen 413 HLDGFPLLALVLAPFLF--LGGLL----MARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVF 486 (650)
T ss_pred ccCcHHHHHHHHHHHHH--HHHHH----HcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33223333332222222 22222 2356677666656677766655554444447888999999999999999999
Q ss_pred hhccCCcchhHHHHHHHHHHHHHHHHH
Q 009175 214 LIIFPNWSGEDLHNSTVAKFEGLAKSI 240 (541)
Q Consensus 214 ~li~P~~a~~~L~~~la~~l~~la~~l 240 (541)
.+++|.......++.+....+++++..
T Consensus 487 ~li~p~~~~~~~rrl~~~~~~~l~~~~ 513 (650)
T PF04632_consen 487 RLIRPFSPEWRRRRLLRALRRDLARLA 513 (650)
T ss_pred HHHCCCChhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888887653
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=99.03 E-value=2e-07 Score=95.70 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHH
Q 009175 194 IAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKG 273 (541)
Q Consensus 194 ~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~ 273 (541)
.++.+...+++|.++.+++++++||.+..+..++.+++.+..+++|++. -.+++...+..+.. . ...+..+.
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~-ka~~~~p~~~~~~~-~------~~~~l~~~ 141 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRA-KARFFDPDQHDDDE-Q------LRIELAQQ 141 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHhcCCCCCccchh-H------HHHHHHHH
Confidence 7888999999999999999999999999999999999999999999884 34444221100000 0 00001111
Q ss_pred HHHHHhhhhHHHHHhhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHh-----HHHH
Q 009175 274 YKAVLDSKSIDETLALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALF-----KDPC 348 (541)
Q Consensus 274 ~r~~L~s~a~lesL~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~-----~~e~ 348 (541)
-..+.+......+.+...+- ..++ +|-...+++....-.. ++.+.. +.+.....+++++.| ...+
T Consensus 142 q~~v~~~~~~~R~~l~~~r~-~~~~-----~~~~~~~~ll~~~~~a---~Dl~E~-~~as~~~y~~l~~~f~~~~~l~~~ 211 (284)
T PF12805_consen 142 QIKVNEALEQARELLLRRRR-SGRG-----KPSTYGRRLLLLFFEA---VDLFER-ALASHYDYEELREQFKHSDVLFRF 211 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhc-ccCC-----CCCcHHHHHHHHHHHH---HHHHHH-HHhccccHHHHHHHhcCChHHHHH
Confidence 11122233333333322211 2221 1222222222222222 222222 222222334454444 3467
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHhh
Q 009175 349 IRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDLNTAIKS 394 (541)
Q Consensus 349 ~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L~~~i~~ 394 (541)
+++....+..++.++.++..++++.. .++++.+.++|+..++.
T Consensus 212 ~~~l~~~a~~l~~ia~ai~~~~~~~~---~~~l~~~l~~l~~~l~~ 254 (284)
T PF12805_consen 212 QRLLEQLAQALRQIAQAILRGRPYHH---RNRLKRALEALEESLEF 254 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCC---chHHHHHHHHHHHHHHH
Confidence 88999999999999999999888653 34677777777777664
No 18
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=98.92 E-value=9.5e-07 Score=100.85 Aligned_cols=294 Identities=12% Similarity=0.097 Sum_probs=161.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 009175 56 RRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESG 135 (541)
Q Consensus 56 r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g 135 (541)
.++.+++|+.+|++.+.++.+. +.+. +-++=+.+.++...-.+..+.+..=+.+++-|++...++.+...+..+.|
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~---~~~~-~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p 81 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWF---FDIS-SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKP 81 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---hCch-hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4688999999999887654443 2221 34444556666555556667777778888888888888877777666554
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 136 HIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 136 ~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
. .+++++ ++.++.++.+ ..+.++|.- ++..|. +|+++...........+..-+.+++|.++-.+++++
T Consensus 82 ~---lf~~~l--~~~tf~~~ml---ga~G~Rya~---Iaf~tL-liaiytmlg~~~~~~w~~~pllll~GalwY~llsl~ 149 (704)
T TIGR01666 82 W---LFAVGL--TVSTFGFIML---GAVGQRYAT---IAFGSL-LVALYTMLGYIEVNVWFIQPVMLLCGTLWYSVVTLI 149 (704)
T ss_pred H---HHHHHH--HHHHHHHHHH---HHhhhhHHH---HHHHHH-HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222222 2222222222 223444521 122222 122222111111223455788999999999999999
Q ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHH---HHHHhhhhHH-HHHhhhc
Q 009175 216 IFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGY---KAVLDSKSID-ETLALYA 291 (541)
Q Consensus 216 i~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~---r~~L~s~a~l-esL~~~A 291 (541)
.|+.+..+-+++.+++.+..+++|++. -..+|..+.+.+. ..+..+.- ..+.+..+.. +.+..
T Consensus 150 ~~~l~p~rp~q~~LA~~y~~La~yL~a-ka~lf~p~~~~~~----------~~~~~~~a~~n~~lv~~ln~ar~~Ll~-- 216 (704)
T TIGR01666 150 VHLFFPNRPVQENLAKAFCQLAEYLET-KSCFFDPDEVAEI----------QKKHLNFAMKNANVVTALNQVKTALLT-- 216 (704)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHH-HHhhCCCCccchh----------hhHHHHHHHHhHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999873 3345554321111 00011110 1122222222 22321
Q ss_pred ccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHH-----HHHHHHHHHHHHHHHHHHHH
Q 009175 292 SWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALFKD-----PCIRLANEVSKALMELANSI 366 (541)
Q Consensus 292 ~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~-----e~~~l~~~~~~vL~~La~al 366 (541)
|.++.++-....++ + +..+...-+|....+.....+++++.|.+ .++++....+..++.++.++
T Consensus 217 -------r~~~~~~~~~~~r~---l-~~y~~AqDihEra~ssh~~y~~L~~~f~~sdvL~~~~~ll~~~a~ac~~la~ai 285 (704)
T TIGR01666 217 -------RIRGQHRHPLTQRM---L-RYYFAAQDIHERASSSHFDYQQLTEHFKNSDLLFRFQRLLELQAQACKEITASI 285 (704)
T ss_pred -------HhccCCCChHHHHH---H-HHHHHHHHHHHHHHHcccCHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122221122211 2 11122233333333333334455555533 67888888999999999999
Q ss_pred hcCCCCCchhhhHHHHHHHHHHHHHH
Q 009175 367 KSRRHCSPEVLSDHLHEALQDLNTAI 392 (541)
Q Consensus 367 ~~~~~~~~~~~~~~~~~A~~~L~~~i 392 (541)
..+++... .+..+.|.+.|+.++
T Consensus 286 ~~~~~~~~---~~~~~~al~~l~~sl 308 (704)
T TIGR01666 286 RLNKPYQH---DKRVERALLGTLHSL 308 (704)
T ss_pred HcCCCCCC---CchHHHHHHHHHHHH
Confidence 98877643 234555555555553
No 19
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=98.85 E-value=1.2e-06 Score=100.09 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=158.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 009175 56 RRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESG 135 (541)
Q Consensus 56 r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g 135 (541)
..+.+++|+.+|+..+.++.+. .+....++=+.+.++..--.+..+.+..=+.+++-|++...++.+...+..+.+
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~----~g~~~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p 81 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWW----FGLLFLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKP 81 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----hCCccHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 4588999999999887554432 221234455555555554456666666667777777777777666666655544
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009175 136 HIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYD---YGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFM 212 (541)
Q Consensus 136 ~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~---yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiV 212 (541)
. +++ +.+++.+++++.+ ..+.++|. +|.+ .+..|+++ +. ......+.--+.+++|.++-.++
T Consensus 82 ~---~~~--~~l~~~tf~~~ml---ga~G~r~~~I~f~~L-~~aiytml---~~---~~~~~w~~~pllll~GalwY~l~ 146 (701)
T TIGR01667 82 W---LFP--FLLTLLTFGFILL---GALGQRYATIAFASL-LAAIYTML---GA---GEVPVWFIEPLLILAGTLWYGLL 146 (701)
T ss_pred H---HHH--HHHHHHHHHHHHH---HHhhhhHHhHHHHHH-HHHHHHHc---Cc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 1 222 2222222222222 22345553 2221 22222221 21 11222333566788899999999
Q ss_pred HhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCCCCchhHHHH---HHHHhhhhHHHHHhh
Q 009175 213 SLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEEVKINLMDKPSDDEDPIYKGY---KAVLDSKSIDETLAL 289 (541)
Q Consensus 213 s~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~~~~~~~~~~~a~~d~~~~~~---r~~L~s~a~lesL~~ 289 (541)
+++.+..+..+.+++.+++.+..+++|++. -..+|...++.+. ++...+.. ..+.+..++....+.
T Consensus 147 sll~~~l~p~rp~q~~La~~y~~La~yL~a-Ka~lf~p~~~~~~----------~~~~~~l~~~n~~lv~~ln~~~~~ll 215 (701)
T TIGR01667 147 TLIWFLLFPNQPLQESLSRLYRELAEYLEA-KSSLFDPDQHTDP----------EKALLPLAVRNGKVVDALNQCKQQLL 215 (701)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHhCCCCCCCCCh----------hHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999873 3345543211111 11111100 012222222222221
Q ss_pred hcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHHH-----HHHHHHHHHHHHHHHHH
Q 009175 290 YASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTEIQTPRSVRALFKDP-----CIRLANEVSKALMELAN 364 (541)
Q Consensus 290 ~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~e-----~~~l~~~~~~vL~~La~ 364 (541)
. + .++.++-....++ + +......-+|....+.....+++++.|... ++++....+..++.++.
T Consensus 216 ~-r-------~~~~~~~~~~~rl---l-~~y~~A~di~E~a~ss~~~Y~~L~~~f~~sd~l~~~~~ll~~~a~a~~~la~ 283 (701)
T TIGR01667 216 M-R-------LRGNRTDPLTKRM---L-RYYFEAQDIHERASSSHHQYQELQELFEHSDVLFRIQRLLQTQAQACQVLAR 283 (701)
T ss_pred H-H-------hcCCCCCchHHHH---H-HHHHHHHHHHHHHHhccCCHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1111111111111 2 112223334443444444566777777654 89999999999999999
Q ss_pred HHhcCCCCCchhhhHHHHHHHHHHHHHHh
Q 009175 365 SIKSRRHCSPEVLSDHLHEALQDLNTAIK 393 (541)
Q Consensus 365 al~~~~~~~~~~~~~~~~~A~~~L~~~i~ 393 (541)
++..+++... .++.+.+.+.|+..+.
T Consensus 284 ai~~~~~~~~---~~~~~~~~~~l~~sl~ 309 (701)
T TIGR01667 284 DILLRQPYYH---RLRTERALEKQIAALE 309 (701)
T ss_pred HHHcCCCCCC---CchHHHHHHHHHHHHH
Confidence 9998877643 2344555555544443
No 20
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.63 E-value=0.093 Score=59.97 Aligned_cols=160 Identities=17% Similarity=0.131 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhc-----ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 58 VIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVL-----EFTAGATFCKGLNRGLGTLLAGSLAFLFEYIAN 132 (541)
Q Consensus 58 ~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~-----~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~ 132 (541)
..-++|+++++.+++++-.. .+| +.|.-+++.+.|+. .|+--.. ..+=+.||++|..+|+++.+..-
T Consensus 353 ~~~glRa~~ai~~~~~fWI~----TgW-~~Ga~a~~~aAV~~~LfA~~~nP~~~---~~~fl~Gtl~a~~~a~l~~f~vL 424 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLW----TGW-TSGSGAMVMIAVVTSLAMRLPNPRMV---AIDFLYGTLAALPLGALYFMVII 424 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccC-chHHHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887764332 577 66666665554442 3444333 33446889999888888755443
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 009175 133 ESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFM 212 (541)
Q Consensus 133 ~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiV 212 (541)
+.-+.+.+.+ ++++..+.+ +.-..+ .++ .++.+-+++.++..+.......--+...+.--+..++|+++|+++
T Consensus 425 P~i~~~f~lL-~laLap~~~---~~g~~~-~~~--~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~ 497 (652)
T PRK10631 425 PNTQQSMLLL-CISLGVLGF---FIGIEV-QKR--RLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIV 497 (652)
T ss_pred hcccccHHHH-HHHHHHHHH---HHHHHh-ccc--HHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3321011222 122111111 111111 133 333222334444333322222223677778889999999999999
Q ss_pred HhhccCCcchhHHHHHHHHH
Q 009175 213 SLIIFPNWSGEDLHNSTVAK 232 (541)
Q Consensus 213 s~li~P~~a~~~L~~~la~~ 232 (541)
..++.|.......|..+...
T Consensus 498 f~lirp~~~~r~~rrL~~~~ 517 (652)
T PRK10631 498 ILLVRDNSRDRTGRVLLNQF 517 (652)
T ss_pred HHHhCCCCHHHHHHHHHHHH
Confidence 98888886665555554443
No 21
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=96.33 E-value=0.21 Score=46.04 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHH
Q 009175 61 AFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFRA 140 (541)
Q Consensus 61 AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~~ 140 (541)
++|.+.+.+++....+. .+| +.|+-+.+-.++++.+.---+.+...+=++.+++-+..+..+..+..+.+
T Consensus 2 ~LRia~g~~l~l~~~~~----~~~-~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P----- 71 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKL----FGW-PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYP----- 71 (140)
T ss_pred eeehhHHHHHHHHHHHH----HCC-CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 46778888876665554 466 78999998888877655555666666666777777777777776666654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-cchHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 141 VFIGSAVFLVGAAATYMRFIPYIKK-NYDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 141 v~lgl~vfi~~~~~~y~r~~~~~k~-~y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
+...+.++++-++++|. ..++ ++-.|. +..+...++...+..+ ...+.++......|++++.++.++
T Consensus 72 ~~~~l~v~l~~~~~f~~----~~~~~~~l~~~-~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~~l 139 (140)
T PF11168_consen 72 VVMLLLVFLLFFWSFYR----MSRGPKFLFGT-MLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIAAL 139 (140)
T ss_pred HHHHHHHHHHHHHHHHH----HhCCCchHHHH-HHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHHHh
Confidence 22223333333333222 2232 233333 2333333333333222 345666777777777777776653
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=82.79 E-value=5.5 Score=32.46 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Q 009175 199 FYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEAC 243 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~ 243 (541)
+...++|.+++.++.+++-| ..++++|+.+.+..+.+.+.+...
T Consensus 2 ~~g~l~Ga~~Ga~~glL~aP-~sG~e~R~~l~~~~~~~~~~~~~~ 45 (74)
T PF12732_consen 2 LLGFLAGAAAGAAAGLLFAP-KSGKETREKLKDKAEDLKDKAKDL 45 (74)
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999998888 688899999999888777765543
No 23
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=74.01 E-value=50 Score=35.42 Aligned_cols=78 Identities=8% Similarity=0.166 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHH
Q 009175 167 YDYGVVIFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLH-NSTVAKFEGLAKSIEACVN 245 (541)
Q Consensus 167 y~yg~~i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~-~~la~~l~~la~~l~~~v~ 245 (541)
...|.+++...|+++.+...+....-. ..|+. +.+++++++++- +.+-.|-+.-.+ -+..+.++.+.+.....++
T Consensus 96 ~vLg~Figtfvy~l~~l~~i~~~~~~~--~p~~~-~~~a~~l~i~~v-~~li~fI~~i~~~iqv~~ii~~i~~~~~~~i~ 171 (371)
T PF10011_consen 96 VVLGTFIGTFVYSLLVLIAIRSGDYGS--VPRLS-VFIALALAILSV-VLLIYFIHHIARSIQVSNIIARIEEDARKAID 171 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccccc--CcchH-HHHHHHHHHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 456777788888988887765543211 33444 555554444332 222223222211 1333344445544444444
Q ss_pred HHh
Q 009175 246 EYF 248 (541)
Q Consensus 246 ~y~ 248 (541)
..+
T Consensus 172 ~~~ 174 (371)
T PF10011_consen 172 RLY 174 (371)
T ss_pred Hhh
Confidence 444
No 24
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=70.28 E-value=16 Score=32.66 Aligned_cols=43 Identities=26% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHH
Q 009175 199 FYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEA 242 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~ 242 (541)
++.+++|.+++.+...++-| ..++++|+.+.+..+.+-...+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP-~sGkelR~~~K~~~~~~~~~ae~ 50 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAP-KSGKELRKKLKKSGDALFELAED 50 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCC-cccHHHHHHHHHHHHHhHHHHHH
Confidence 56789999999999887777 56788886666665555444443
No 25
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=68.45 E-value=18 Score=41.33 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=87.0
Q ss_pred HHHHHHhccCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH
Q 009175 178 FNLITVSSYRAE---NVLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAKFEGLAKSIEACVNEYFNDSAEE 254 (541)
Q Consensus 178 ~~lV~l~~~~~~---~~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~l~~la~~l~~~v~~y~~~~e~~ 254 (541)
|++.++.++... ..++.+..|...+. -++..++.+++|..++.+.+..++..++.+.++.. ...++++..
T Consensus 363 ~~i~alh~~l~s~~qap~~~~~~~~~~l~---rva~e~~kvl~~~~~~~~~~~~~s~~~~~~~~~~~-~A~~~L~~~--- 435 (625)
T KOG4711|consen 363 FIIMALHGCLLSEIQAPRDLRNKFRLTLR---RVAIEISKVLRPFRAKVELMYKLSSALDILLQYVT-VADRELQRN--- 435 (625)
T ss_pred HHHHHhcccccccccCcHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhhccCchhhHHHHHHH-HHHHHHHhh---
Confidence 334444454332 24555555555444 77888899999999999999999987643433322 333333321
Q ss_pred HhhhccCCCCCCCchhHHHH-HHHHhhhhHHHHHhhhcccCCCCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 009175 255 VKINLMDKPSDDEDPIYKGY-KAVLDSKSIDETLALYASWEPRHSRHCYRFPWQQYVKLGAILRQFGYTVVALHGCLLTE 333 (541)
Q Consensus 255 ~~~~~~~~~~a~~d~~~~~~-r~~L~s~a~lesL~~~A~~Ep~~gr~~~~~P~~~Y~kl~~~lr~~~~~l~aL~~~l~s~ 333 (541)
+++ .-..+-+. +-.-....+..++++....||... +.+|.+.|..+ ...+......+ +
T Consensus 436 -----ids----~p~l~v~~~~~~~~~~~~~~~~~~~~~~e~~~~---~~~~~ek~~~~---~~~~~~~~~~~------~ 494 (625)
T KOG4711|consen 436 -----IDS----NPTLLVNSESWISSNLQAARELLNEVNHEPNLK---GTFPVEKYNEL---IHKLLSLGILL------E 494 (625)
T ss_pred -----ccC----cchHhhcccchhhhhHHHHHHHhhhhccchhhc---ccccchhHHHH---HHHhhcchhhh------h
Confidence 110 00011111 111123334566777888998744 78898888744 33333322211 1
Q ss_pred cCCCh------hHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 009175 334 IQTPR------SVRALFKDPCIRLANEVSKALMELANSIKSRRHCS 373 (541)
Q Consensus 334 iq~p~------~~r~~~~~e~~~l~~~~~~vL~~La~al~~~~~~~ 373 (541)
...+. .....+....+.........+....++++.+.+.+
T Consensus 495 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~~~s~~~~~ 540 (625)
T KOG4711|consen 495 VGTRFGNWDDAKLKETLRRLRKDSVSSVNAVSYISSNSIRSKNPIP 540 (625)
T ss_pred ccccccchhhHHHHHhhcccccchhhhhhhhhhhhhcccccCCCCc
Confidence 11111 11111111112334456677788888888766643
No 26
>PRK11677 hypothetical protein; Provisional
Probab=67.56 E-value=42 Score=30.94 Aligned_cols=43 Identities=9% Similarity=-0.030 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhhccCC-cchhHHHHHHHHHHHHHHHHHH
Q 009175 199 FYTIAIGCGICLFMSLIIFPN-WSGEDLHNSTVAKFEGLAKSIE 241 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~-~a~~~L~~~la~~l~~la~~l~ 241 (541)
++..+||++|++++..+.-|. ....+|.+.+.+.-..+.+|=+
T Consensus 7 ~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykq 50 (134)
T PRK11677 7 LIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQ 50 (134)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999877666 3455666666666555555533
No 27
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=67.22 E-value=1.5e+02 Score=30.23 Aligned_cols=51 Identities=10% Similarity=-0.125 Sum_probs=37.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHH----HHHHHHHHHHHHHHH
Q 009175 189 ENVLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDL----HNSTVAKFEGLAKSI 240 (541)
Q Consensus 189 ~~~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L----~~~la~~l~~la~~l 240 (541)
++.+..+..=++.-++-.++++++. .++|.+..++. ...+++-++.-++++
T Consensus 69 ~~~~~~~~l~~~Gglwy~~lsl~~~-~l~p~r~~rqaLa~~y~~lA~yl~~ka~~~ 123 (284)
T PF12805_consen 69 PEALEHALLFLAGGLWYLLLSLLWW-PLRPYRPVRQALAECYRALADYLRAKARFF 123 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888888889899999998885 49999876654 455666666655555
No 28
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.33 E-value=28 Score=31.95 Aligned_cols=41 Identities=32% Similarity=0.263 Sum_probs=27.5
Q ss_pred chHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 88 AIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEY 129 (541)
Q Consensus 88 ~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~ 129 (541)
...+.++++.++...-.+... .++|++-|++|.++|+++-+
T Consensus 99 ~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 99 IIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred ehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344556665555443333333 89999999999999988754
No 29
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.50 E-value=34 Score=30.33 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 009175 107 FCKGLNRGLGTLLAGSLAFLFEYIANESG 135 (541)
Q Consensus 107 l~kgl~RilGTliGa~la~~i~~l~~~~g 135 (541)
+.-+..=+.|+++|+++|+++=+++...+
T Consensus 46 ~klssefIsGilVGa~iG~llD~~agTsP 74 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAGTSP 74 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 33444567899999999999988887765
No 30
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=62.74 E-value=1.8e+02 Score=29.49 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCch----HHHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHH
Q 009175 152 AAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAEN----VLRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHN 227 (541)
Q Consensus 152 ~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~~----~~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~ 227 (541)
.+....|++| |+.-.|++++...++.+..+... ..+ ..+....=+..+++..++.++|++-..|.. ....++
T Consensus 53 ~~~~~~k~lP--rk~~~~~~l~gg~~~~~y~l~~~-~~nl~~il~~~~~~v~~yv~~~G~vsf~vcy~~gp~~-~~rs~~ 128 (249)
T PF10225_consen 53 LLFQLSKLLP--RKSMFYAVLYGGWSFGLYFLQQL-WENLQSILEEYRIYVLGYVLVVGLVSFAVCYRYGPPV-DPRSRN 128 (249)
T ss_pred HHHHHHHHcc--CcchhHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc-cHhHHH
Confidence 3344567777 44444555555444443333211 122 122333344555666667777777666764 466677
Q ss_pred HHHHHHHHHHHH
Q 009175 228 STVAKFEGLAKS 239 (541)
Q Consensus 228 ~la~~l~~la~~ 239 (541)
.+...++.++-.
T Consensus 129 ~v~W~Lqligl~ 140 (249)
T PF10225_consen 129 FVKWALQLIGLV 140 (249)
T ss_pred HHHHHHHHHHHH
Confidence 777777766643
No 31
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=62.22 E-value=37 Score=35.53 Aligned_cols=81 Identities=21% Similarity=0.142 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHh
Q 009175 314 AILRQFGYTVVALHGCLLTEIQTPRSVRALFKDPCIRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDLNTAIK 393 (541)
Q Consensus 314 ~~lr~~~~~l~aL~~~l~s~iq~p~~~r~~~~~e~~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L~~~i~ 393 (541)
+.+|||....+-+..|+.=-.......-....+.|+.++.+...+-..|+.++..+++.+.++.++.+..|-+.+...|+
T Consensus 238 ntlRQlGAnfEL~a~~l~WL~~~g~~~~~~aa~a~~~ias~Ak~~QFrLARAv~r~r~~~~~~~Ld~~~~ay~~~~~~L~ 317 (319)
T PF08893_consen 238 NTLRQLGANFELLASYLRWLDAQGFSGPAEAAEACRTIASEAKVVQFRLARAVARGRFDDCEDCLDPMEAAYDRAMDGLA 317 (319)
T ss_pred hhHHhccccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 78899988888777765421111111112256789999999999999999998888887777788899999999888776
Q ss_pred h
Q 009175 394 S 394 (541)
Q Consensus 394 ~ 394 (541)
+
T Consensus 318 ~ 318 (319)
T PF08893_consen 318 R 318 (319)
T ss_pred c
Confidence 4
No 32
>PF06496 DUF1097: Protein of unknown function (DUF1097); InterPro: IPR009476 This family consists of several bacterial putative membrane proteins.
Probab=61.45 E-value=1.3e+02 Score=27.58 Aligned_cols=71 Identities=13% Similarity=-0.043 Sum_probs=47.4
Q ss_pred CCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHH
Q 009175 86 ENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMR 158 (541)
Q Consensus 86 ~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r 158 (541)
+-+.|+..-....+=-. |...+...+=+.+...|.+.|.++..+....+.. .++...+.++++.+...+..
T Consensus 19 ~l~~W~~Figwa~yfa~-G~~~~~~~~~~~~~~~Gi~~a~~~~~~~~~~~~~-~~~~~~i~v~i~~~~m~~~~ 89 (144)
T PF06496_consen 19 GLPGWAGFIGWASYFAA-GGGKKGLKKSLASNLSGIVWAWLAILLSGLLGGN-GPLALAIVVGIFSFVMVYQA 89 (144)
T ss_pred CchHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHHHh
Confidence 34589887766555444 8888888888889999999999988877665421 13444455555555554443
No 33
>PF13295 DUF4077: Domain of unknown function (DUF4077)
Probab=49.31 E-value=1.7e+02 Score=26.32 Aligned_cols=81 Identities=20% Similarity=0.431 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCc-hHH-----------HHHHHHHHHHHHHHHH
Q 009175 141 VFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAE-NVL-----------RIAHDRFYTIAIGCGI 208 (541)
Q Consensus 141 v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~-~~~-----------~~A~~R~~~I~IGi~i 208 (541)
.+.|+++.+++.+.+|.. .+..-|.|-....++.++.+++-.++.. ..+ -+.-.|+.-|+-|+++
T Consensus 52 wvcgisvvvfgtlltfie---smeamykyimtfmllmmsfimvqafnespavfqmvyftlavsliylserlvvilggvav 128 (175)
T PF13295_consen 52 WVCGISVVVFGTLLTFIE---SMEAMYKYIMTFMLLMMSFIMVQAFNESPAVFQMVYFTLAVSLIYLSERLVVILGGVAV 128 (175)
T ss_pred HhhchhhhhHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHHHHhcccchh
Confidence 456677777777666653 3344466644333444555555555442 222 2234577666656544
Q ss_pred HHHHHhhccCCcchhHHH
Q 009175 209 CLFMSLIIFPNWSGEDLH 226 (541)
Q Consensus 209 aliVs~li~P~~a~~~L~ 226 (541)
. ..++++..|..+-..
T Consensus 129 v--ltfilcsywpeqffa 144 (175)
T PF13295_consen 129 V--LTFILCSYWPEQFFA 144 (175)
T ss_pred e--eehhhhhcChHHHHH
Confidence 3 344555566544433
No 34
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=48.67 E-value=40 Score=24.23 Aligned_cols=30 Identities=37% Similarity=0.576 Sum_probs=27.8
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009175 476 ALPFAAFASLLVEIVARLDNVIEEVEELGR 505 (541)
Q Consensus 476 ~~~~~~~~sll~e~v~~~~~~~~~~~el~~ 505 (541)
..|.+.-+-||+-+=.|+|++.+++++|++
T Consensus 7 GFPi~va~yLL~R~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 7 GFPIAVAIYLLVRIEKKLDELTESINELSE 36 (38)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999986
No 35
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.01 E-value=1.6e+02 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 009175 199 FYTIAIGCGICLFMSLIIFPNW-SGEDLHNSTVAKFEGLAKSIEACVNEYFN 249 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~~-a~~~L~~~la~~l~~la~~l~~~v~~y~~ 249 (541)
++..+||++|++++..+..+.. -...|.+.+.+.=..+.++ +.-|.++|.
T Consensus 3 ~i~lvvG~iiG~~~~r~~~~~~~~q~~l~~eL~~~k~el~~y-k~~V~~HF~ 53 (128)
T PF06295_consen 3 IIGLVVGLIIGFLIGRLTSSNQQKQAKLEQELEQAKQELEQY-KQEVNDHFA 53 (128)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4566788888888888777663 2345666666555555554 333444443
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=46.53 E-value=3.8e+02 Score=32.63 Aligned_cols=27 Identities=26% Similarity=0.550 Sum_probs=19.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 101 FTAGATFCKGLNRGLGTLLAGSLAFLFE 128 (541)
Q Consensus 101 psvG~Tl~kgl~RilGTliGa~la~~i~ 128 (541)
|..|+. +--+.|.+|..+|+.+|+..+
T Consensus 140 p~aGG~-Y~yisralGp~~Gf~iG~~~~ 166 (953)
T TIGR00930 140 VKGGGA-YYLISRSLGPEFGGSIGLIFA 166 (953)
T ss_pred CCccHH-HHHHHHHhCcHHHHHHHHHHH
Confidence 443444 345689999999999998765
No 37
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=45.39 E-value=1.4e+02 Score=35.70 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 009175 200 YTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 200 ~~I~IGi~ialiVs~li~P~ 219 (541)
+.+.+|+++|++++.++.|.
T Consensus 835 ~~~~~gi~~~l~~~l~~lPa 854 (862)
T TIGR03480 835 ILLSLGLGLTLLCTLIFLPA 854 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 55667777777777777774
No 38
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=44.08 E-value=82 Score=34.37 Aligned_cols=40 Identities=13% Similarity=0.034 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 174 FLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 174 ~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
+++|..+| ..++.+..+.-...|.+.|++|.++|+.+..+
T Consensus 44 avlTVvvv--fe~tvGatl~KG~nR~lGTl~aG~La~~~~~l 83 (406)
T PF11744_consen 44 AVLTVVVV--FEPTVGATLSKGLNRGLGTLLAGILAFGVSWL 83 (406)
T ss_pred HHhhhHhh--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666544 45666777899999999999999999988764
No 39
>PRK09776 putative diguanylate cyclase; Provisional
Probab=43.56 E-value=4.3e+02 Score=31.91 Aligned_cols=14 Identities=21% Similarity=0.396 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 009175 484 SLLVEIVARLDNVI 497 (541)
Q Consensus 484 sll~e~v~~~~~~~ 497 (541)
.+|.++..++++.+
T Consensus 721 ~~L~~~a~~l~~~~ 734 (1092)
T PRK09776 721 ALLRELASLMLSML 734 (1092)
T ss_pred HHHHHHHHHHHHhC
Confidence 34444444444443
No 40
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=43.49 E-value=3.5e+02 Score=29.97 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.4
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 100 EFTAGATFCKGLNRGLGTLLAGSLAFLFEY 129 (541)
Q Consensus 100 ~psvG~Tl~kgl~RilGTliGa~la~~i~~ 129 (541)
+-+.|.--.+...-+.|++.|++.|.+.=.
T Consensus 94 KIsFgfIpi~l~G~LFGP~~G~l~g~lsDl 123 (477)
T PRK12821 94 RVTLELILVKISGLLFGPIIGIFSAATIDF 123 (477)
T ss_pred EEehhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566677777788999999998887643
No 41
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=43.07 E-value=62 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.259 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 009175 175 LLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 175 ~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~li~P~ 219 (541)
.+|..+++ ....++....+.+|++.+++|+++++++.. +.|.
T Consensus 18 ~it~~~v~--~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 18 PITVVSVL--SPSYGATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 45554444 334567799999999999999999999874 5553
No 42
>PRK09823 putative inner membrane protein; Provisional
Probab=40.88 E-value=2.9e+02 Score=25.62 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhccCCc
Q 009175 110 GLNRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAE 189 (541)
Q Consensus 110 gl~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~ 189 (541)
++--++|+.+|+.+.++...+.++..+ ...++..+.++-+....+ +-+|.+-+++|-..++ -...
T Consensus 12 ~wFallGPlIGv~~~i~~i~f~~~~~~-~~lll~i~~i~plf~~l~-----------w~~g~~pAlLTGVa~A---clP~ 76 (160)
T PRK09823 12 LWFALLGPLIGVLFLVLYIFFLPGAKE-PLLLLVIIQVLPLFLLLS-----------WTTGAIPALLTGVAVA---CLPE 76 (160)
T ss_pred hHHHHhcchhhhHHHHHHHHhcCCCCC-chhhhHHHHhhHHHHHHH-----------HHHhhHHHHHHHHHHH---hCcH
Confidence 344568999999998887766554432 111111111111111111 2344444566654333 2246
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhh
Q 009175 190 NVLRIAHDRFYTIAI-GCGICLFMSLI 215 (541)
Q Consensus 190 ~~~~~A~~R~~~I~I-Gi~ialiVs~l 215 (541)
++++-.++|.+.-.+ |++++-+.+..
T Consensus 77 kiyq~~~~R~lacgi~G~vIttLy~~~ 103 (160)
T PRK09823 77 KIYQQKIYRCLACGIGGVVITTLYCAV 103 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 789999999877654 44455555443
No 43
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=38.81 E-value=8.1e+02 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHhhCCccc
Q 009175 378 SDHLHEALQDLNTAIKSQPRLF 399 (541)
Q Consensus 378 ~~~~~~A~~~L~~~i~~~~~~~ 399 (541)
.+.++++++++++.+++.|.+-
T Consensus 682 ~~~L~~~a~~v~~~l~~~pgv~ 703 (1021)
T PF00873_consen 682 LEELRKAAEKVKAKLAEIPGVT 703 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcc
Confidence 3588999999999999998864
No 44
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=38.48 E-value=5.4e+02 Score=27.76 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=42.5
Q ss_pred HHHhccCCc-hhHHHHHHHHH-HHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHH
Q 009175 47 LWKVGREDP-RRVIHAFKVGL-SLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLA 124 (541)
Q Consensus 47 ~w~~~~~d~-r~~~~AlK~gl-Al~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la 124 (541)
+...+-.|+ +..+..++.|+ |..+....| ..-.|. ++.....+.-.-+-++.+....++.+|+.-+.+++
T Consensus 203 i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY-~~L~~l-------Ga~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~ 274 (378)
T TIGR00796 203 IRSRGVTKPKKITKYTIKAGLIAAVLLAFIY-LSLFYL-------GATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLG 274 (378)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------hcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHH
Confidence 334455666 56788999998 555543333 221111 11111111101145777788899999998888888
Q ss_pred HHHHH
Q 009175 125 FLFEY 129 (541)
Q Consensus 125 ~~i~~ 129 (541)
+++..
T Consensus 275 i~v~l 279 (378)
T TIGR00796 275 LIITL 279 (378)
T ss_pred HHHHH
Confidence 77643
No 45
>PRK11715 inner membrane protein; Provisional
Probab=38.20 E-value=2e+02 Score=31.76 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=10.1
Q ss_pred chHHhHHhHHhcccChhHHHHHHHHH
Q 009175 88 AIWAVMTVVVVLEFTAGATFCKGLNR 113 (541)
Q Consensus 88 ~~WAviTvvvV~~psvG~Tl~kgl~R 113 (541)
+|++.-.+++.+-.-+.....+++.|
T Consensus 360 AYliAa~a~v~li~~Y~~~vl~~~k~ 385 (436)
T PRK11715 360 AYLIAALACVLLIGFYLSAVLRSWKR 385 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34433333333333333334444444
No 46
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=35.93 E-value=2.5e+02 Score=30.99 Aligned_cols=27 Identities=15% Similarity=-0.054 Sum_probs=12.3
Q ss_pred CchHHhHHhHHhcccChhHHHHHHHHH
Q 009175 87 NAIWAVMTVVVVLEFTAGATFCKGLNR 113 (541)
Q Consensus 87 ~~~WAviTvvvV~~psvG~Tl~kgl~R 113 (541)
-+|++.-.+++.+-..+...+.|+..|
T Consensus 353 ~AYliAa~a~i~Li~~Y~~~vl~~~k~ 379 (430)
T PF06123_consen 353 LAYLIAALACIGLISLYLSSVLKSWKR 379 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 344444444444444444444444444
No 47
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=35.77 E-value=2.2e+02 Score=29.98 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcc
Q 009175 109 KGLNRGLGTLLAGSLAFLFE-YIANES 134 (541)
Q Consensus 109 kgl~RilGTliGa~la~~i~-~l~~~~ 134 (541)
+.+-|++-+++|+.+|+... .+....
T Consensus 3 ~~ii~l~~~i~g~~lG~~~~p~ll~~~ 29 (356)
T COG4956 3 KWIIILLFIIIGAVLGFAVIPELLADL 29 (356)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHhhc
Confidence 45678899999999999887 444443
No 48
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=34.70 E-value=29 Score=36.16 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009175 111 LNRGLGTLLAGSLAFLFEYI 130 (541)
Q Consensus 111 l~RilGTliGa~la~~i~~l 130 (541)
+-|+.|+++||++|++.+.+
T Consensus 344 ~IrinGallG~liG~~~~~i 363 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLI 363 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 44899999999999987654
No 49
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=34.00 E-value=40 Score=30.25 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 009175 114 GLGTLLAGSLAFLFEYIANES 134 (541)
Q Consensus 114 ilGTliGa~la~~i~~l~~~~ 134 (541)
++|+++||++|.+...++.+.
T Consensus 8 l~G~liGgiiGa~aaLL~AP~ 28 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPK 28 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCc
Confidence 689999999988876655443
No 50
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=33.57 E-value=2.8e+02 Score=26.92 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 009175 196 HDRFYTIAIGCGIC 209 (541)
Q Consensus 196 ~~R~~~I~IGi~ia 209 (541)
...+..|+++++.|
T Consensus 142 ~~ti~yIiL~iLf~ 155 (189)
T PF05313_consen 142 AYTISYIILAILFC 155 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 51
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=32.87 E-value=3e+02 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCcc
Q 009175 197 DRFYTIAIGCGICLFMSLIIFPNWS 221 (541)
Q Consensus 197 ~R~~~I~IGi~ialiVs~li~P~~a 221 (541)
.|...++++++..+++..+-+|.++
T Consensus 88 ~~~~~~~lwi~t~~vl~~l~~py~~ 112 (116)
T PF02411_consen 88 RRQTKILLWIVTVLVLLLLAFPYYA 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777777766677777654
No 52
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=31.81 E-value=8.8e+02 Score=29.04 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 009175 193 RIAHDRFYTIAIGCGICLFMSLII 216 (541)
Q Consensus 193 ~~A~~R~~~I~IGi~ialiVs~li 216 (541)
.+.+.=+..+++|++++++...++
T Consensus 207 ~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 207 TILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556777777777766655
No 53
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=31.50 E-value=5.8e+02 Score=26.07 Aligned_cols=72 Identities=8% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhhhhhccCCCchHHhH-HhHHhcccChhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 009175 58 VIHAFKVGLSLT--LVSLLYLMGPLFKGIGENAIWAVM-TVVVVLEFTAGATFC-KGLNRGLGTLLAGSLAFLFEYI 130 (541)
Q Consensus 58 ~~~AlK~glAl~--L~sl~~~~~~~~~~~~~~~~WAvi-TvvvV~~psvG~Tl~-kgl~RilGTliGa~la~~i~~l 130 (541)
++|=+..++.+. +....-.+.-++.++ +...|... ..++..-|....... +...+++--++|+++++.+...
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~y-p~~t~~fF~GLIlgSip~l~k~~~~~~~~~~~~~~~g~~i~~~~~~~ 129 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLENY-PIPTYSFFFGLILGSIPFLYKEIKKFSPKSIIFFLLGAIIALLLSFL 129 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHc
Confidence 444444444433 333222333334444 44455443 333444454444333 3444566666777777766543
No 54
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=31.48 E-value=7.1e+02 Score=27.39 Aligned_cols=38 Identities=8% Similarity=0.103 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 173 IFLLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 173 i~~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
++++|..++.+. +.+.-...|...+++|+++++++..+
T Consensus 175 ~a~~~l~~il~~-----~~~~~g~~~~~svLiGiv~G~v~a~~ 212 (433)
T PRK11412 175 LSVAVMCLVLAM-----IIFLPQRIARYSLLVGTIVGWILWAF 212 (433)
T ss_pred HHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455555544432 23555677899999999999987543
No 55
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.01 E-value=2.1e+02 Score=30.66 Aligned_cols=80 Identities=16% Similarity=0.148 Sum_probs=42.5
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHHHhccCCc--hH-HHHHHHHHHHHHHHHHHHHHHHhhccCCcchhHHHHHHHHH
Q 009175 156 YMRFIPYIKKNYDYGVVIFLLTFNLITVSSYRAE--NV-LRIAHDRFYTIAIGCGICLFMSLIIFPNWSGEDLHNSTVAK 232 (541)
Q Consensus 156 y~r~~~~~k~~y~yg~~i~~lT~~lV~l~~~~~~--~~-~~~A~~R~~~I~IGi~ialiVs~li~P~~a~~~L~~~la~~ 232 (541)
-.||+| |+.-.|+.++.+-++++-++--.-++ .+ +++-.+=+..+++=.+++++|++=.-|....+ -+..+.-+
T Consensus 183 v~rf~P--Kkt~~~~iliGgWs~slY~i~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~R-S~~ilmWt 259 (452)
T KOG3817|consen 183 VARFFP--KKTMMYGILIGGWSISLYVIKQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPR-SQTILMWT 259 (452)
T ss_pred HHHhcc--cccceEEEEEccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcc-hhhHHHHH
Confidence 347777 33334554444444433332211111 12 22333335566666778899999888875433 36666666
Q ss_pred HHHHHH
Q 009175 233 FEGLAK 238 (541)
Q Consensus 233 l~~la~ 238 (541)
++.++-
T Consensus 260 Lqli~l 265 (452)
T KOG3817|consen 260 LQLIGL 265 (452)
T ss_pred HHHHHH
Confidence 665553
No 56
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=30.27 E-value=6.8e+02 Score=27.92 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHh-----------------cccChhHHHHHHHHHHHHHHHHHHHH
Q 009175 62 FKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVV-----------------LEFTAGATFCKGLNRGLGTLLAGSLA 124 (541)
Q Consensus 62 lK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV-----------------~~psvG~Tl~kgl~RilGTliGa~la 124 (541)
+-.++-.++.+.+.|..|.+.. +.+..||.+|.++. |.++..+-.+-.-.|..+..+|.++.
T Consensus 87 L~g~ip~~i~~~l~F~~p~~~~-~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~ 165 (467)
T COG2211 87 LWGAIPFAIVAVLLFITPDFSM-TGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLV 165 (467)
T ss_pred HHHhHHHHHHHHHHHcCCCccc-CcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555565555566553221 23566666665532 33455555566667888877776554
Q ss_pred HHH
Q 009175 125 FLF 127 (541)
Q Consensus 125 ~~i 127 (541)
.++
T Consensus 166 ~~~ 168 (467)
T COG2211 166 AVL 168 (467)
T ss_pred HHH
Confidence 433
No 57
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=29.88 E-value=6.4e+02 Score=26.06 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHhcccChhHHHHHHHHHH
Q 009175 57 RVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVVLEFTAGATFCKGLNRG 114 (541)
Q Consensus 57 ~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~Ri 114 (541)
.-.-++|.+++..+.. ..++|+-..+ ..+.|-.+-++=+.--...-+++-++.|+
T Consensus 41 ~g~t~lRl~~aaLIll--~l~RPwr~r~-~~~~~~~~~~yGvsLg~MNl~FY~si~ri 95 (292)
T COG5006 41 AGVTALRLAIAALILL--ALFRPWRRRL-SKPQRLALLAYGVSLGGMNLLFYLSIERI 95 (292)
T ss_pred hhHHHHHHHHHHHHHH--HHhhHHHhcc-ChhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467888888877743 3456665555 55666555544333233334455555664
No 58
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=29.78 E-value=2.9e+02 Score=28.68 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 009175 190 NVLRIAHDRFYTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 190 ~~~~~A~~R~~~I~IGi~ialiVs~li~P~ 219 (541)
+-+..+..-+..+++|++++-.|++-+ |.
T Consensus 186 ~~it~aasilGl~vvGal~as~V~v~~-~l 214 (282)
T PRK11103 186 QKLTEGASILGLFVMGALVNKWTHVNI-PL 214 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEEE-eE
Confidence 446777788889999999998887633 44
No 59
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=29.43 E-value=1e+03 Score=28.24 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 009175 225 LHNSTVAKFEGLAKSIEACVNEY 247 (541)
Q Consensus 225 L~~~la~~l~~la~~l~~~v~~y 247 (541)
+|+.+...++..++.++.+.+.+
T Consensus 308 ~~~~~~~rl~~~a~~~~~Ls~tf 330 (764)
T TIGR02865 308 VREIAAEKLEEFSEVFRELSNTF 330 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778888888877665554
No 60
>PRK11660 putative transporter; Provisional
Probab=28.93 E-value=3.5e+02 Score=30.70 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 009175 111 LNRGLGTLLAGSLA 124 (541)
Q Consensus 111 l~RilGTliGa~la 124 (541)
+.-.+++++|+++|
T Consensus 318 ~a~G~aNi~~~~fg 331 (568)
T PRK11660 318 VGQGLGNIVAPFFG 331 (568)
T ss_pred HHHhHHHHHHHHhC
Confidence 34455555555553
No 61
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=28.44 E-value=3.1e+02 Score=31.20 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 009175 105 ATFCKGLNRGLGTLLAGSLA 124 (541)
Q Consensus 105 ~Tl~kgl~RilGTliGa~la 124 (541)
++.+-.+-..+|+++++++|
T Consensus 281 d~nrELiaqGiaNi~sglfg 300 (554)
T COG0659 281 DSNRELIAQGIANIASGLFG 300 (554)
T ss_pred CCCHHHHHhhHHHHHHHHhC
Confidence 34444555566666666654
No 62
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=28.37 E-value=2.1e+02 Score=29.51 Aligned_cols=19 Identities=16% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 009175 111 LNRGLGTLLAGSLAFLFEY 129 (541)
Q Consensus 111 l~RilGTliGa~la~~i~~ 129 (541)
..=++|.++|++.+.++..
T Consensus 34 ~Rll~~A~~Gal~~~~~~~ 52 (293)
T PF03419_consen 34 WRLLLGAAIGALYSLLIFF 52 (293)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3446788899988877654
No 63
>COG0555 CysU ABC-type sulfate transport system, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=26.83 E-value=5.3e+02 Score=26.68 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 009175 192 LRIAHDRFYTIAIGCGICLFMSLIIFPNW 220 (541)
Q Consensus 192 ~~~A~~R~~~I~IGi~ialiVs~li~P~~ 220 (541)
.+..-..+..+.+|+++|.++.-.++=.+
T Consensus 128 ~~~~gi~~~~t~~GVivA~~Fvs~Pf~vr 156 (274)
T COG0555 128 LAPLGIKFAFTPLGVIVAMFFVSLPFVVR 156 (274)
T ss_pred hcccCceEeccHHHHHHHHHHHcchhHHH
Confidence 34555678889999999988755554433
No 64
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=26.69 E-value=6.7e+02 Score=25.79 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 009175 200 YTIAIGCGICLFMSLIIFP 218 (541)
Q Consensus 200 ~~I~IGi~ialiVs~li~P 218 (541)
..+.+|++++++++..+.|
T Consensus 278 ~~~~~gi~~~~l~~l~llP 296 (333)
T PF03176_consen 278 LLAAIGILIALLLSLTLLP 296 (333)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567788888888877777
No 65
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=26.56 E-value=8.8e+02 Score=26.58 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=26.0
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 100 EFTAGATFCKGLNRGLGTLLAGSLAFLFEYIAN 132 (541)
Q Consensus 100 ~psvG~Tl~kgl~RilGTliGa~la~~i~~l~~ 132 (541)
.++-......|.-=.+.|++|++.++.+.++-.
T Consensus 278 ~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~ 310 (412)
T PF01770_consen 278 PPSDNESVYNGAVEAASTLLGAIAALLAGYVKV 310 (412)
T ss_pred CCCCCCcccchHHHHHHHHHHHHHHHHHhHhhc
Confidence 555566677777788999999999999988733
No 66
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=25.97 E-value=4.6e+02 Score=27.04 Aligned_cols=26 Identities=8% Similarity=0.069 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 190 NVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 190 ~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
+-+..+..-+..+++|++++-.|++-
T Consensus 176 ~~it~~a~ilGl~vvGal~as~V~v~ 201 (271)
T TIGR00828 176 QKLTEGASILGLFVMGALVAKWTHIN 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEEEE
Confidence 44677777888999999999888763
No 67
>PRK09855 PTS system N-acetylgalactosamine-specific transporter subunit IID; Provisional
Probab=24.92 E-value=4.1e+02 Score=27.31 Aligned_cols=96 Identities=15% Similarity=0.147 Sum_probs=49.6
Q ss_pred ccc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 009175 99 LEF--TAGATFCKGLNRGLGTLLAGSLAFLFEYIANESGHIFRAVFIGSAVFLVGAAATYMRFIPYIKKNYDYGVVIFLL 176 (541)
Q Consensus 99 ~~p--svG~Tl~kgl~RilGTliGa~la~~i~~l~~~~g~~~~~v~lgl~vfi~~~~~~y~r~~~~~k~~y~yg~~i~~l 176 (541)
|.| -+|+|+.-+..|.+-..+|+.+|. .++ ...|++. +.++.+ ..+.|.+.. +..|..|.- .+
T Consensus 99 MGPlAGIGDSlf~gt~~pI~~~Ia~~lA~------~Gn--~lgpil~-~~~~~~---~~~~~~~~~-~~GY~~G~~--~i 163 (263)
T PRK09855 99 FGPIAGIGDAIFWFTLLPIMAGICSSFAS------QGN--LLGPILF-FAVYLL---IFFLRVGWT-HVGYSVGVK--AI 163 (263)
T ss_pred hccchhchhHHHHHHHHHHHHHHHHHHHh------cCC--cHHHHHH-HHHHHH---HHHHHHHHH-HHHHHhHHH--HH
Confidence 555 457888877777766555444332 222 2334432 122222 122333322 223555542 11
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 009175 177 TFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMSLI 215 (541)
Q Consensus 177 T~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs~l 215 (541)
+ .+.+ ..+-+..+..-+..+++|+.++-.|++-
T Consensus 164 ~----~l~~--~~~~it~~asilGl~vvGal~as~V~i~ 196 (263)
T PRK09855 164 D----KVRE--NSQMIARSATILGITVIGGLIASYVHIN 196 (263)
T ss_pred H----HHHh--HHHHHHHHHHHHHHHHHHHHHHeeEEEE
Confidence 1 1112 1244677778888999999999888763
No 68
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=24.65 E-value=56 Score=25.86 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 009175 112 NRGLGTLLAGSLAFLFEYIA 131 (541)
Q Consensus 112 ~RilGTliGa~la~~i~~l~ 131 (541)
.|+=|..++.++|+++.|+.
T Consensus 37 GrihGSAIAI~lGLvLAy~G 56 (60)
T PF03818_consen 37 GRIHGSAIAIVLGLVLAYIG 56 (60)
T ss_pred CCcchHHHHHHHHHHHHHHc
Confidence 38899999999999988875
No 69
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.91 E-value=2.2e+02 Score=21.70 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009175 112 NRGLGTLLAGSLAFLFEY 129 (541)
Q Consensus 112 ~RilGTliGa~la~~i~~ 129 (541)
.|++|.++|.++|+++..
T Consensus 9 ~~iiG~~~G~ila~l~l~ 26 (51)
T PF10031_consen 9 GKIIGGLIGLILALLILT 26 (51)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 466777777776666543
No 70
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=23.82 E-value=5.5e+02 Score=30.78 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=26.0
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 175 LLTFNLITVSSYRAENVLRIAHDRFYTIAIGCGICLFMS 213 (541)
Q Consensus 175 ~lT~~lV~l~~~~~~~~~~~A~~R~~~I~IGi~ialiVs 213 (541)
+-|..+.++....+...+.--..|+.+=+.|.+||++.-
T Consensus 452 lW~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi 490 (876)
T KOG1172|consen 452 LWTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFI 490 (876)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHH
Confidence 334444444444455567777889999899999887753
No 71
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.62 E-value=5.2e+02 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 009175 190 NVLRIAHDRFYTIAIGCGICLFMSLIIFP 218 (541)
Q Consensus 190 ~~~~~A~~R~~~I~IGi~ialiVs~li~P 218 (541)
+-+..+..-+..+++|++++..|+. -.|
T Consensus 174 ~~i~~~asilGl~vvGal~as~V~v-~~~ 201 (264)
T PF03613_consen 174 QKITEAASILGLMVVGALIASYVNV-STP 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeEEE-eee
Confidence 4466777778889999999998876 334
No 72
>PF07698 7TM-7TMR_HD: 7TM receptor with intracellular HD hydrolase; InterPro: IPR011621 These bacterial 7TM receptor proteins have an intracellular domain IPR006674 from INTERPRO. This entry corresponds to the 7 helix transmembrane domain. These proteins also contain an N-terminal extracellular domain.
Probab=23.50 E-value=6.2e+02 Score=23.90 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 009175 109 KGLNRGLGTLLAGSLAFLFEYIANE 133 (541)
Q Consensus 109 kgl~RilGTliGa~la~~i~~l~~~ 133 (541)
-.+++=.|.+.+.++++.+..+.+.
T Consensus 78 ~l~~~~~ai~~~~~~sl~~~~~~~~ 102 (194)
T PF07698_consen 78 ILIDPRLAILASLFLSLLASLLFGF 102 (194)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhcc
Confidence 3444556777777777777666533
No 73
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.40 E-value=1.5e+02 Score=23.97 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 009175 113 RGLGTLLAGSLAFLFEYI 130 (541)
Q Consensus 113 RilGTliGa~la~~i~~l 130 (541)
-+.||++|+++++++.++
T Consensus 52 W~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 52 WIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346677777777766544
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=23.10 E-value=8.9e+02 Score=27.49 Aligned_cols=52 Identities=12% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHhhCCcccc
Q 009175 349 IRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDLNTAIKSQPRLFL 400 (541)
Q Consensus 349 ~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L~~~i~~~~~~~~ 400 (541)
..-..++..-+.....-..++.+......+..+++...+|...++..|.++.
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~ 218 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYK 218 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3333344444455555555556555566778889999999999999887764
No 75
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.74 E-value=2.6e+02 Score=23.95 Aligned_cols=11 Identities=9% Similarity=0.271 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 009175 115 LGTLLAGSLAF 125 (541)
Q Consensus 115 lGTliGa~la~ 125 (541)
+++++|+++++
T Consensus 27 ~~~~~~a~i~~ 37 (112)
T PF14015_consen 27 ILSVLGAVIPV 37 (112)
T ss_pred HHHHHHHHHHH
Confidence 44445555555
No 76
>COG4325 Predicted membrane protein [Function unknown]
Probab=22.72 E-value=1e+03 Score=26.02 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchhh
Q 009175 228 STVAKFEGLAKSIEACVNEYFNDSAE 253 (541)
Q Consensus 228 ~la~~l~~la~~l~~~v~~y~~~~e~ 253 (541)
++++.++++..-..+.+++|+.+.++
T Consensus 189 q~~n~i~kv~~~t~~l~~qlyp~~~d 214 (464)
T COG4325 189 QIDNIIDKVRLRTLGLVDQLYPESDD 214 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 55667777777666777788776433
No 77
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=21.61 E-value=5.3e+02 Score=25.90 Aligned_cols=70 Identities=16% Similarity=0.078 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh---hccCCCchHHhHHhHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 009175 60 HAFKVGLSLTLVSLLYLMGPLF---KGIGENAIWAVMTVVVVLEFTAGATFCKGLNRGLGTLLAGSLAFLFEYIA 131 (541)
Q Consensus 60 ~AlK~glAl~L~sl~~~~~~~~---~~~~~~~~WAviTvvvV~~psvG~Tl~kgl~RilGTliGa~la~~i~~l~ 131 (541)
+.+|.++|+.+..++-+=+.+- -++..++..++-++.+++.+..+.. ..-.|+..-++.|+..++...+.
T Consensus 4 ~l~rL~~A~~lG~lIGlERe~~~r~AGlRT~~LV~lGa~~~~l~~~~~~~--~~~~Rv~a~vvsGigFlgaG~I~ 76 (225)
T PRK15385 4 YILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSP--DSPGRIAAQIVSGIGFLGAGVIM 76 (225)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccCCceehHhHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHheeee
Confidence 6678888888877666544332 1223355566644444433222110 12336666666554433333333
No 78
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=21.34 E-value=3.4e+02 Score=26.15 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=14.1
Q ss_pred HhcccChhHHHHHHHHHHHHHHHHHHH
Q 009175 97 VVLEFTAGATFCKGLNRGLGTLLAGSL 123 (541)
Q Consensus 97 vV~~psvG~Tl~kgl~RilGTliGa~l 123 (541)
+.++|-+.....++. +|+++|.++
T Consensus 53 ~ll~Pf~~g~wk~t~---~G~~igi~~ 76 (173)
T PF11085_consen 53 FLLEPFALGDWKNTW---LGNLIGIVF 76 (173)
T ss_pred hhhhhhhccchhhhh---HHHHHHHHH
Confidence 556787666665553 566555443
No 79
>COG2733 Predicted membrane protein [Function unknown]
Probab=20.98 E-value=39 Score=36.41 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 009175 112 NRGLGTLLAGSLAFLFEYIA 131 (541)
Q Consensus 112 ~RilGTliGa~la~~i~~l~ 131 (541)
-|+=||++||++|++++.+.
T Consensus 392 IRiNGtvVGG~~Gllly~I~ 411 (415)
T COG2733 392 IRINGTVVGGIAGLLLYAIS 411 (415)
T ss_pred EeEcCchHHHHHHHHHHHHH
Confidence 37889999999999987654
Done!