Query 009175
Match_columns 541
No_of_seqs 339 out of 1564
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:30:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dx5_A Acriflavine resistance 42.4 2.2E+02 0.0076 33.0 13.8 21 199-219 1004-1024(1057)
2 3ne5_A Cation efflux system pr 38.7 1.8E+02 0.0063 33.7 12.4 21 199-219 1020-1040(1054)
3 3qb5_K Translin-associated pro 20.7 1.4E+02 0.0049 29.4 6.2 55 339-396 51-105 (290)
4 4h33_A LMO2059 protein; bilaye 17.8 2.1E+02 0.0073 24.6 6.0 56 43-98 3-58 (137)
5 4dx5_A Acriflavine resistance 17.5 1.2E+03 0.04 26.8 14.9 22 378-399 692-713 (1057)
6 3aqp_A Probable secdf protein- 14.2 1.2E+03 0.042 25.6 12.5 20 200-219 401-420 (741)
7 1j1j_A Translin; testis/brain 13.8 7E+02 0.024 23.6 9.1 21 487-507 147-167 (240)
8 2v50_A Multidrug resistance pr 13.5 1.3E+03 0.044 26.4 12.9 20 200-219 472-491 (1052)
9 4ene_A CLC-EC1, H(+)/CL(-) exc 13.2 1.1E+03 0.036 24.3 11.6 25 199-223 407-431 (446)
10 3iyz_A Aquaporin-4; water tran 12.7 1E+03 0.035 23.9 11.0 24 107-130 129-152 (340)
No 1
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=42.37 E-value=2.2e+02 Score=33.00 Aligned_cols=21 Identities=10% Similarity=0.081 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 009175 199 FYTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~ 219 (541)
.+.+++|++++++++.++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888773
No 2
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=38.71 E-value=1.8e+02 Score=33.67 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 009175 199 FYTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~ 219 (541)
.+.+++|++++++++.++.|.
T Consensus 1020 ~~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1020 AAPMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp THHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 466788888899998888884
No 3
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=20.73 E-value=1.4e+02 Score=29.44 Aligned_cols=55 Identities=9% Similarity=-0.010 Sum_probs=29.7
Q ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHHHHHhhCC
Q 009175 339 SVRALFKDPCIRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDLNTAIKSQP 396 (541)
Q Consensus 339 ~~r~~~~~e~~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L~~~i~~~~ 396 (541)
+.|+.+..-++++..+..+++..|-..- ..+.++.++.++++-.++++..++++.
T Consensus 51 d~REriik~sRdIt~~SK~~If~LhR~~---~~~~~~~il~ea~~~L~~i~~~~~~La 105 (290)
T 3qb5_K 51 DKYERLVKLSRDITVESKRTIFLLHRIT---SAPDMEDILTESEIKLDGVRQKIFQVA 105 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC---SSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666554321 122234455555555555555555433
No 4
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=17.82 E-value=2.1e+02 Score=24.55 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=19.6
Q ss_pred hhHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCchHHhHHhHHh
Q 009175 43 FPNLLWKVGREDPRRVIHAFKVGLSLTLVSLLYLMGPLFKGIGENAIWAVMTVVVV 98 (541)
Q Consensus 43 ~~~~~w~~~~~d~r~~~~AlK~glAl~L~sl~~~~~~~~~~~~~~~~WAviTvvvV 98 (541)
+.+.++++.+...-.....+=..+.+.....+++..+-+..+.+.-||+++|...|
T Consensus 3 ~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~a~y~~~~T~tTv 58 (137)
T 4h33_A 3 YIVPIYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTV 58 (137)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTHHHHHHHCSSCCSHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 34456677665542222222222222233333444332222334557788776544
No 5
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=17.50 E-value=1.2e+03 Score=26.84 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHhhCCccc
Q 009175 378 SDHLHEALQDLNTAIKSQPRLF 399 (541)
Q Consensus 378 ~~~~~~A~~~L~~~i~~~~~~~ 399 (541)
.+.+++++++++..+++.|.+-
T Consensus 692 ~~~L~~~a~~l~~~l~~~~gv~ 713 (1057)
T 4dx5_A 692 HEKLTQARNQLLAEAAKHPDML 713 (1057)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTE
T ss_pred HHHHHHHHHHHHHHHHcCCCce
Confidence 4578888899999999888655
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=14.17 E-value=1.2e+03 Score=25.63 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 009175 200 YTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 200 ~~I~IGi~ialiVs~li~P~ 219 (541)
+.+++|+++++++++++.|.
T Consensus 401 ~~~~~gi~~s~~~al~~~P~ 420 (741)
T 3aqp_A 401 VILAIGVVASVFSNLVFSRH 420 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777663
No 7
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=13.78 E-value=7e+02 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 009175 487 VEIVARLDNVIEEVEELGRIA 507 (541)
Q Consensus 487 ~e~v~~~~~~~~~~~el~~~a 507 (541)
++...-|-.|.|.+.||.+.|
T Consensus 147 v~~edYLlGL~DltGEL~R~a 167 (240)
T 1j1j_A 147 LDVEDYLSGVLILASELSRLS 167 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777664
No 8
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=13.54 E-value=1.3e+03 Score=26.43 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhccCC
Q 009175 200 YTIAIGCGICLFMSLIIFPN 219 (541)
Q Consensus 200 ~~I~IGi~ialiVs~li~P~ 219 (541)
+.+++|+++++++++++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~l~P~ 491 (1052)
T 2v50_A 472 ITIVSAMALSVIVALILTPA 491 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888774
No 9
>4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ...
Probab=13.19 E-value=1.1e+03 Score=24.32 Aligned_cols=25 Identities=4% Similarity=-0.239 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhccCCcchh
Q 009175 199 FYTIAIGCGICLFMSLIIFPNWSGE 223 (541)
Q Consensus 199 ~~~I~IGi~ialiVs~li~P~~a~~ 223 (541)
+.-+++.+++|.+++..+.+..-.+
T Consensus 407 ~lpl~ia~~ia~~v~~~~~~~~iY~ 431 (446)
T 4ene_A 407 ILPMIITGLGATLLAQFTGGKPLYS 431 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHH
Confidence 5667788889988888787654333
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=12.74 E-value=1e+03 Score=23.88 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 107 FCKGLNRGLGTLLAGSLAFLFEYI 130 (541)
Q Consensus 107 l~kgl~RilGTliGa~la~~i~~l 130 (541)
+.+..-.+++=++|+++|.++.+.
T Consensus 129 ~~~~~~YiiAQ~lGA~~GA~lv~~ 152 (340)
T 3iyz_A 129 IAKSVFYITAQCLGAIIGAGILYL 152 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556666665554443
Done!