Query 009175
Match_columns 541
No_of_seqs 339 out of 1564
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:30:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009175.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009175hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1j1ja_ a.118.16.1 (A:) Transl 25.5 99 0.0072 26.7 8.2 27 338-364 18-44 (217)
2 d1tlha_ a.150.1.1 (A:) Anti-si 11.1 99 0.0072 23.1 3.5 27 478-504 9-40 (89)
3 d2b0ha1 a.24.9.2 (A:1838-1973) 10.2 3.6E+02 0.026 20.8 10.7 79 312-393 45-125 (136)
4 d1st6a3 a.24.9.1 (A:253-371) V 10.1 3.2E+02 0.023 21.3 6.7 48 346-393 67-116 (119)
5 d1sj8a2 a.216.1.1 (A:658-782) 9.3 3.7E+02 0.027 20.4 11.0 79 311-395 44-124 (125)
6 d2j3wb1 d.278.1.2 (B:21-188) T 8.7 51 0.0037 27.7 1.2 26 477-502 4-29 (168)
7 d1g5za_ a.24.12.1 (A:) Outer s 8.6 1.4E+02 0.0099 24.9 3.8 27 486-512 16-42 (164)
8 d1d0qa_ g.41.3.2 (A:) Zinc-bin 8.4 87 0.0063 23.8 2.4 27 486-512 69-97 (102)
9 d1mnta_ a.43.1.1 (A:) Mnt repr 7.9 72 0.0052 22.8 1.5 22 487-511 32-53 (66)
10 d1st6a5 a.24.9.1 (A:489-646) V 7.3 3E+02 0.022 22.6 5.6 47 347-393 52-100 (158)
No 1
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.52 E-value=99 Score=26.71 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=17.3
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHH
Q 009175 338 RSVRALFKDPCIRLANEVSKALMELAN 364 (541)
Q Consensus 338 ~~~r~~~~~e~~~l~~~~~~vL~~La~ 364 (541)
.+.|+.+..-++++...+.++...|..
T Consensus 18 ~d~RE~lik~sRdI~~~sk~~I~~Lhr 44 (217)
T d1j1ja_ 18 QDIREEIRKVVQSLEQTAREILTLLQG 44 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666654
No 2
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=11.05 E-value=99 Score=23.12 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=21.8
Q ss_pred cHHHHHHHHH-----HHHHHHHHHHHHHHHhh
Q 009175 478 PFAAFASLLV-----EIVARLDNVIEEVEELG 504 (541)
Q Consensus 478 ~~~~~~sll~-----e~v~~~~~~~~~~~el~ 504 (541)
-.+|.||+|| |+|.+=++.|+=..||+
T Consensus 9 eIit~aSiLIK~~~edI~~~q~~FI~FLNE~G 40 (89)
T d1tlha_ 9 EIITVASILIKFSREDIVENRANFIAFLNEIG 40 (89)
T ss_dssp HHHHHHHHHHHHTTHHHHHSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHhHHHHHHHHHHhC
Confidence 3689999999 67888888888777775
No 3
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.16 E-value=3.6e+02 Score=20.81 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc--CCChhHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHHH
Q 009175 312 LGAILRQFGYTVVALHGCLLTEI--QTPRSVRALFKDPCIRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDLN 389 (541)
Q Consensus 312 l~~~lr~~~~~l~aL~~~l~s~i--q~p~~~r~~~~~e~~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L~ 389 (541)
|+...+.++.....|..+..... ...++.+..+.+..+.++..+..++......-. .|-.+ ....++.++++.+.
T Consensus 45 L~~~a~~~a~~~~~L~~~~k~~A~~~~~~~~q~~ll~~ak~v~~s~~~Lv~aak~~~~--nP~d~-~~~~~L~~aAr~V~ 121 (136)
T d2b0ha1 45 LGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQC--SPSDV-YTKKELIECARRVS 121 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCcH-HHHHHHHHHHHHHH
Confidence 45666777777766666544321 233567888888888998888888877665544 23222 23345555555554
Q ss_pred HHHh
Q 009175 390 TAIK 393 (541)
Q Consensus 390 ~~i~ 393 (541)
..+.
T Consensus 122 esv~ 125 (136)
T d2b0ha1 122 EKVS 125 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 4
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.13 E-value=3.2e+02 Score=21.35 Aligned_cols=48 Identities=10% Similarity=0.167 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hhhhHHHHHHHHHHHHHHh
Q 009175 346 DPCIRLANEVSKALMELANSIKSRRHCSP--EVLSDHLHEALQDLNTAIK 393 (541)
Q Consensus 346 ~e~~~l~~~~~~vL~~La~al~~~~~~~~--~~~~~~~~~A~~~L~~~i~ 393 (541)
.++..++.++......|+.--+.+.--+| ..+...+.+.+++|+.+++
T Consensus 67 ~~Il~~c~ei~~lt~qLadLr~~G~G~sPeA~~lA~qi~~kL~~L~~~v~ 116 (119)
T d1st6a3 67 REILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVE 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777776666654444 2233455555555555443
No 5
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.28 E-value=3.7e+02 Score=20.42 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCh--hHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhHHHHHHHHHH
Q 009175 311 KLGAILRQFGYTVVALHGCLLTEIQTPR--SVRALFKDPCIRLANEVSKALMELANSIKSRRHCSPEVLSDHLHEALQDL 388 (541)
Q Consensus 311 kl~~~lr~~~~~l~aL~~~l~s~iq~p~--~~r~~~~~e~~~l~~~~~~vL~~La~al~~~~~~~~~~~~~~~~~A~~~L 388 (541)
+|....+++......|..+-..--..|. ..++ .+..-+..+...+..|-.+.+...+- +....++++|...+
T Consensus 44 ~Li~aa~~v~~~t~qLv~~aK~~a~~~~d~~~q~----~L~~aak~V~~a~~~Lv~a~~~a~~~--~~~~~~l~~aa~~v 117 (125)
T d1sj8a2 44 QVIAAATQCALSTSQLVACTKVVAPTISSPVCQE----QLVEAGRLVAKAVEGCVSASQAATED--GQLLRGVGAAATAV 117 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSSHHHHH----HHHHHHHHHHHHHHHHHHHHHHTCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHH
Confidence 3445555555544444444433222332 2333 34445555555666666555544332 33557889999998
Q ss_pred HHHHhhC
Q 009175 389 NTAIKSQ 395 (541)
Q Consensus 389 ~~~i~~~ 395 (541)
...++++
T Consensus 118 ~~~l~~L 124 (125)
T d1sj8a2 118 TQALNEL 124 (125)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 8888764
No 6
>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=8.71 E-value=51 Score=27.73 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=19.7
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Q 009175 477 LPFAAFASLLVEIVARLDNVIEEVEE 502 (541)
Q Consensus 477 ~~~~~~~sll~e~v~~~~~~~~~~~e 502 (541)
+|+.+|+-|..|+|...+.-++.++|
T Consensus 4 Vs~s~f~~L~~ElV~y~~~~~~~~~e 29 (168)
T d2j3wb1 4 VSVSAFALLFSEMVQYCQSRVYSVSE 29 (168)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hCHHHHHHHHHHHHHHHHhccCCHHH
Confidence 57899999999999977665444443
No 7
>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}
Probab=8.62 E-value=1.4e+02 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcCC
Q 009175 486 LVEIVARLDNVIEEVEELGRIACFKEF 512 (541)
Q Consensus 486 l~e~v~~~~~~~~~~~el~~~a~f~~~ 512 (541)
...-|.-+|.+|.+++||+.+|==|.-
T Consensus 16 fv~aVKEVetLv~SIDELA~KAIGKKI 42 (164)
T d1g5za_ 16 VVLAVKEVETLLASIDELATKAIGKKI 42 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 345688899999999999987755543
No 8
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=8.41 E-value=87 Score=23.80 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=20.2
Q ss_pred HHHHHHHHHH--HHHHHHHhhhhcCCcCC
Q 009175 486 LVEIVARLDN--VIEEVEELGRIACFKEF 512 (541)
Q Consensus 486 l~e~v~~~~~--~~~~~~el~~~a~f~~~ 512 (541)
.|++|.++++ -.||+++||+.++..=+
T Consensus 69 ~i~fv~~~~~~sf~eAv~~La~~~gi~l~ 97 (102)
T d1d0qa_ 69 AFTFLMDIEGIPFVEAAKRLAAKAGVDLS 97 (102)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCCG
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHhCCCCC
Confidence 4566666666 47999999999987543
No 9
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=7.90 E-value=72 Score=22.83 Aligned_cols=22 Identities=5% Similarity=0.317 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCcC
Q 009175 487 VEIVARLDNVIEEVEELGRIACFKE 511 (541)
Q Consensus 487 ~e~v~~~~~~~~~~~el~~~a~f~~ 511 (541)
-|||+||| +++++-+..+.|++
T Consensus 32 aEIV~rLe---~s~~~~~~~~~~~d 53 (66)
T d1mnta_ 32 SELLQIVQ---DALSKPSPVTGYRN 53 (66)
T ss_dssp HHHHHHHH---HHHHCCCCSSSCCC
T ss_pred HHHHHHHH---HHhcCCCCchHHHh
Confidence 48999998 56666666666664
No 10
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=7.28 E-value=3e+02 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCc--hhhhHHHHHHHHHHHHHHh
Q 009175 347 PCIRLANEVSKALMELANSIKSRRHCSP--EVLSDHLHEALQDLNTAIK 393 (541)
Q Consensus 347 e~~~l~~~~~~vL~~La~al~~~~~~~~--~~~~~~~~~A~~~L~~~i~ 393 (541)
++-+++.++..+...|++--+.+.--+| ..+...+.+.+++|+..++
T Consensus 52 ~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~ 100 (158)
T d1st6a5 52 DLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQ 100 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666655555443333 2233455555555555554
Done!