Query 009176
Match_columns 541
No_of_seqs 213 out of 598
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:32:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 3.2E-20 1.1E-24 193.9 13.1 403 8-533 25-437 (451)
2 3o7q_A L-fucose-proton symport 99.8 8.5E-20 2.9E-24 190.3 15.2 395 8-522 23-425 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.5 3.7E-13 1.3E-17 142.8 17.5 411 32-535 36-477 (491)
4 2cfq_A Lactose permease; trans 99.5 1.3E-14 4.5E-19 152.3 6.0 183 331-534 213-404 (417)
5 2gfp_A EMRD, multidrug resista 99.5 3.6E-15 1.2E-19 152.8 -1.1 336 26-515 16-362 (375)
6 2xut_A Proton/peptide symporte 99.3 3.5E-12 1.2E-16 136.5 12.0 144 10-162 15-171 (524)
7 4gc0_A D-xylose-proton symport 99.0 5.3E-10 1.8E-14 118.2 9.9 126 27-152 26-175 (491)
8 4aps_A DI-OR tripeptide H+ sym 98.7 6.7E-08 2.3E-12 102.2 13.0 176 338-532 13-199 (491)
9 1pw4_A Glycerol-3-phosphate tr 98.7 2.7E-08 9.3E-13 103.3 9.3 175 336-530 26-207 (451)
10 2xut_A Proton/peptide symporte 98.4 2.7E-07 9.2E-12 98.5 8.4 171 338-527 12-196 (524)
11 3o7q_A L-fucose-proton symport 98.4 1.5E-06 5E-11 90.0 11.0 161 361-528 49-228 (438)
12 2gfp_A EMRD, multidrug resista 98.3 1.4E-07 4.8E-12 96.1 3.0 147 360-526 22-171 (375)
13 2cfq_A Lactose permease; trans 97.1 7.6E-05 2.6E-09 77.8 0.1 167 333-522 2-180 (417)
14 4gc0_A D-xylose-proton symport 96.5 0.0047 1.6E-07 64.6 7.9 111 375-492 59-188 (491)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.82 E-value=3.2e-20 Score=193.88 Aligned_cols=403 Identities=13% Similarity=0.031 Sum_probs=265.7
Q ss_pred hhHHHHHHHHHHHHhcC-CccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSING-TNSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~G-t~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
.||..+..........+ ..+.++.+-|.+.+.+ +|.+|...+..+..+|..+ .++.|.+.||+|+|.++.+|.+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHH
Confidence 44665555555544433 4577888889999999 9999999999999999966 8999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHhc
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIET 164 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~~ 164 (541)
+|.......... . .++|.+.+..++.|.+.+...+++.....+.||+ +||.+.|+.-...+++..+-..+...+..
T Consensus 104 ~~~~~~~~~~~~-~--~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 104 AVMLFMGFVPWA-T--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHCHHH-H--SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHhhhhc-c--ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877653321 1 2346777778888998888888887777899985 69999999888888877776666544331
Q ss_pred CCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCC
Q 009176 165 SSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLP 244 (541)
Q Consensus 165 ~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~ 244 (541)
. .++-..-+.+.+....+..++...+++.. +... ..++
T Consensus 181 ~--~g~w~~~f~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~---------------------------------- 218 (451)
T 1pw4_A 181 W--FNDWHAALYMPAFCAILVALFAFAMMRDT-PQSC-----GLPP---------------------------------- 218 (451)
T ss_dssp H--TCCSTTCTHHHHHHHHHHHHHHHHHCCCS-STTT-----CCCS----------------------------------
T ss_pred H--hccHHHHHHHHHHHHHHHHHHHHhhccCC-Hhhc-----CCCC----------------------------------
Confidence 0 01111112222222222222222222111 0000 0000
Q ss_pred chhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCC
Q 009176 245 PVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLG 324 (541)
Q Consensus 245 ~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (541)
+++.+++ .+++. ++++.++ .
T Consensus 219 -----------------------------------------~~~~~~~----~~~~~----------~~~~~~~-----~ 238 (451)
T 1pw4_A 219 -----------------------------------------IEEYKND----YPDDY----------NEKAEQE-----L 238 (451)
T ss_dssp -----------------------------------------CTTTCCC--------------------------------
T ss_pred -----------------------------------------hhhhccc----ccccc----------hhhhhcc-----c
Confidence 0000000 00000 0000000 0
Q ss_pred ccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhccc
Q 009176 325 AKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRS 401 (541)
Q Consensus 325 ~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~ 401 (541)
...+...++.++++.+|.+.+..++..............+.++ +|++ +.....++.++.+.+|+++.|.+.|...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~- 317 (451)
T 1pw4_A 239 TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR- 317 (451)
T ss_dssp CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-
T ss_pred ccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 0122335788999999999888877655544445555555555 5665 34578888899999999999988443201
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHhhcc--c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhh-
Q 009176 402 KHMIPSPASIGALMAPMAGAFMLLLNET--N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPI- 477 (541)
Q Consensus 402 ~~~~~R~~~l~~~~~~~~~~~ll~~~~~--~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~- 477 (541)
+ .|...+....+..+++.+++.... + ..+.+...+.|++++..++...+++.|.+..++.|+.+|+......+
T Consensus 318 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (451)
T 1pw4_A 318 G---NRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394 (451)
T ss_dssp T---CHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred C---CchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence 1 233333333332324555444432 2 34566778899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009176 478 GSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYART 533 (541)
Q Consensus 478 Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~ 533 (541)
|..+++.+.|.++|..+ |+..|++.+++++++.++.+++.++.
T Consensus 395 g~~~~~~~~g~l~~~~g-------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFFG-------------WDGGFMVMIGGSILAVILLIVVMIGE 437 (451)
T ss_dssp HHHHHHHHHHHHHHSSC-------------SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999753 89999999999999988888765443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.82 E-value=8.5e-20 Score=190.29 Aligned_cols=395 Identities=9% Similarity=0.064 Sum_probs=257.6
Q ss_pred hhHHHHHHHHHHHHhcCC-ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHH
Q 009176 8 LQWLSLVGAIWLQSINGT-NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGL 85 (541)
Q Consensus 8 ~rw~~l~as~~v~~~~Gt-~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~ 85 (541)
++|..+..........|. .+.++.+-|.+++.+|+|.+|...+.....+|..+ .++.|.+.||+|+|.++.+|.+...
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444444433333 35778888999999999999999999999999865 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHHHHHHHHHHHHh-
Q 009176 86 IGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSAKLYTSAVNAIE- 163 (541)
Q Consensus 86 ~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSaaift~i~~~~~- 163 (541)
+|..+.+..... .++|.+.+..++.|.+.+..++++.....+.+|+ +||.+.|+.-...+++..+-..+...+.
T Consensus 103 ~~~~~~~~~~~~----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 103 LGAALFWPAAEI----MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHhcccc----ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888764222 3578888889999999998888888888899986 7999999998888888887777665544
Q ss_pred cCCCCCcccchhhhhchhhhHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCC
Q 009176 164 TSSPNKRAKLYLLFNSIFPLLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLL 243 (541)
Q Consensus 164 ~~~~~~d~~~fLllla~~p~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~ 243 (541)
... ++.. +.. .... +++ +...+........ -..|..
T Consensus 179 ~~~--~~~~---------~~~--------~~~~-~~~----------~~~~~~~~~~~~w-~~~~~~------------- 214 (438)
T 3o7q_A 179 SNV--PHQS---------QDV--------LDKM-SPE----------QLSAYKHSLVLSV-QTPYMI------------- 214 (438)
T ss_dssp TSS--CCCC---------HHH--------HHHS-CHH----------HHHHHHHHHHHHH-HHHHHH-------------
T ss_pred ccc--cccc---------ccc--------cccC-Ccc----------hhhhhhhhhhhhH-HHHHHH-------------
Confidence 200 1100 000 0000 000 0000100000000 000000
Q ss_pred CchhHHHHHHHHhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCC
Q 009176 244 PPVKNLIGIVICLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGL 323 (541)
Q Consensus 244 ~~~~~~~~~~~ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (541)
..++.+++...... .+ . ++.++ +.++ +++.
T Consensus 215 -----~~~~~~~~~~~~~~-~~-----------~----p~~~~------------~~~~----------~~~~------- 244 (438)
T 3o7q_A 215 -----IVAIVLLVALLIML-TK-----------F----PALQS------------DNHS----------DAKQ------- 244 (438)
T ss_dssp -----HHHHHHHHHHHHHH-CC-----------C----CCCTT------------TCCC----------CSST-------
T ss_pred -----HHHHHHHHHHHHHH-Hc-----------C----Ccccc------------cccc----------cccc-------
Confidence 00000001110000 00 0 00000 0000 0000
Q ss_pred CccccCCHHhhhhchhHHHHHHHHHHhhcccceeecchHHH-Hhhh-cCC--cccchhhhhhhcccccccccccchhhhc
Q 009176 324 GAKEEIGAMLMLQRVDFWLYFFVYFSGATLGLVFLNNLGQI-AESR-GCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFS 399 (541)
Q Consensus 324 ~~~~d~t~~q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i-~~sl-g~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~ 399 (541)
.+...+.++.++++.+|...+..++..+....+...+... .+.. |++ +.....++..+.+.+||+++|.+.|..
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~- 322 (438)
T 3o7q_A 245 -GSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF- 322 (438)
T ss_dssp -TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred -cchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 0122356789999999999999888877776677777777 6664 775 456778888899999999999885432
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhH
Q 009176 400 RSKHMIPSPASIGALMAPMAGAFMLLLNETNVALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGS 479 (541)
Q Consensus 400 ~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs 479 (541)
+|...+....++.+++.+++....+....+...++|++++..++...+.+.|.++.+ -++.-++...+ .+|+
T Consensus 323 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~ 394 (438)
T 3o7q_A 323 ------APHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGG 394 (438)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-THHH
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-HHHH
Confidence 444555555555555555555554444455568999999999999999999999965 66666666644 4899
Q ss_pred HHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 480 FLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 480 ~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
.++|.+.|.++|..++ |+.+|.+.+.++++.
T Consensus 395 ~~~~~~~g~l~~~~g~------------~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 395 GIVTPVMGFVSDAAGN------------IPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHHTS------------SGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc------------hHHHHHHHHHHHHHH
Confidence 9999999999999887 788888765544443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.49 E-value=3.7e-13 Score=142.76 Aligned_cols=411 Identities=13% Similarity=0.030 Sum_probs=224.6
Q ss_pred chHHHHHH-----hCCChhhHHHHHHhhhhhccc-chhhhhhccc-cchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 32 YSSQLKQL-----LSLSQLQLNNLAFASDAGKLF-GWISGVASVY-LPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 32 ys~~lk~~-----l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~-~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
..+-+++. +|+|.+|...+.....+|..+ .+++|.+.|| +|+|.++.+|.+...+|..+...+ .++
T Consensus 36 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 108 (491)
T 4aps_A 36 LLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FGA 108 (491)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CST
T ss_pred HHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hhH
Confidence 34455666 999999999999999999966 8999999999 899999999999999988766431 235
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCCC-C--CceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCcccchhhhhchh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFPF-D--RQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKRAKLYLLFNSIF 181 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~--RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d~~~fLllla~~ 181 (541)
|.+.+..++.|.+.+...+++.....+.||+ + ||++.++.-....+++.+-..+...+.. ...-...+.+...
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~g~~~~f~~~~~ 184 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE----AAGYHVAFSLAAI 184 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHH
Confidence 6777788888888887777777777788986 5 6667777667777777666666555541 1111112222222
Q ss_pred hhHhHhhccceeeeecCCCcccccccc-c-ccCCc-ch----hhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHH
Q 009176 182 PLLACVVTSPVVREIGDHVQESSSSSR-R-RTRGG-FV----FMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVI 254 (541)
Q Consensus 182 p~~v~l~~~~~ir~~~~~~~~~~~~~~-~-~~~~~-f~----~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (541)
..+++++...+.++...+++..+..++ + +++.. +. .++...+. ..+.. ..+..+. ..........
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~~~--~~~~~~~----~~~~~~~~~~ 256 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAI--IVVMN--LVGWNSL----PAYINLLTIV 256 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHH--HHHHH--HHSSCCT----THHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHH--HHHHH--hccCccc----ccchhhhhHH
Confidence 233333333333222011110000000 0 00000 00 00000000 00000 0000000 0000000000
Q ss_pred HhhhccccccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhh
Q 009176 255 CLLAPLVIPLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLM 334 (541)
Q Consensus 255 ll~~Pl~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~ 334 (541)
....|... . .. .. ++...+. .+.
T Consensus 257 ~~~~~~~~------~-------------------------~~-~~------------~~~~~~~-------------~~~ 279 (491)
T 4aps_A 257 AIAIPVFY------F-------------------------AW-MI------------SSVKVTS-------------TEH 279 (491)
T ss_dssp HHHHHHHH------H-------------------------HH-HC-----------------------------------
T ss_pred HHHHHHHH------H-------------------------HH-Hh------------hcccccH-------------HHH
Confidence 00000000 0 00 00 0000000 000
Q ss_pred hhchhHHHHHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccc-hhhhcccCCCCChhHH
Q 009176 335 LQRVDFWLYFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLF-GYFFSRSKHMIPSPAS 410 (541)
Q Consensus 335 l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~-s~~~~~~~~~~~R~~~ 410 (541)
.+...+|.+++...+....-......+....+. .+.+ +.....++.++...++....|.+ |++. || +..+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~-~r--~~~~~~~ 356 (491)
T 4aps_A 280 LRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK-KN--QPSSPTK 356 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT-TC-----CHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh-cc--CCCchHH
Confidence 111223444433332222222223334444443 3433 45667777778888888887766 5443 22 2233333
Q ss_pred HHHHHHHHHHHHHHHhhc---------cc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 411 IGALMAPMAGAFMLLLNE---------TN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 411 l~~~~~~~~~~~ll~~~~---------~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
+....++++++++++... .+ ..+.+...+.|++.+...+...+.+.|.+..++-|+..|+..+...+|..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 436 (491)
T 4aps_A 357 FAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSA 436 (491)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444455554433321 12 34666778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTRK 535 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r~ 535 (541)
+++.+.|.+.|. . |...|.+.+++++++.++.+++.++.||
T Consensus 437 i~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 437 LNAQLVTLYNAK--S------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HHHHHGGGGGGS--S------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHhcc--c------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988764 2 6788999999998888887777655554
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=1.3e-14 Score=152.35 Aligned_cols=183 Identities=8% Similarity=0.043 Sum_probs=122.4
Q ss_pred HHhhhhchhHHHHHHHHHHhhcccceee-cchHHHHhh-hcC---C--cccchhhhhhhcccccccccccchhhhcccCC
Q 009176 331 AMLMLQRVDFWLYFFVYFSGATLGLVFL-NNLGQIAES-RGC---S--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKH 403 (541)
Q Consensus 331 ~~q~l~~~~Fwllf~~~~~g~g~Glm~I-~n~g~i~~s-lg~---~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~ 403 (541)
.++.++++++|.+.+..++.. .+.... ...+...+. ++. + ......++..+.+.+|++..|.+.|..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~----- 286 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI----- 286 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence 467889999998776533322 121111 112222222 111 1 113455566677888999888884432
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhh-hhhhhhhHHH
Q 009176 404 MIPSPASIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIV-VANIPIGSFL 481 (541)
Q Consensus 404 ~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~-~~a~~~Gs~l 481 (541)
+|...+....+.++++++++....+ ..+.+...+.+++++.......+.++|.+..+.-|+.+|+. ..+..+|+.+
T Consensus 287 --g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~ 364 (417)
T 2cfq_A 287 --GGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF 364 (417)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444444444555555555554433 34555566778888877777889999999999999999994 7888899999
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 009176 482 FGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYARTR 534 (541)
Q Consensus 482 ~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r~r 534 (541)
+|.+.|.++|..+ |+..|.+.+++++++.++.+.+.+++|
T Consensus 365 gp~l~G~l~~~~g-------------~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 365 MSVLAGNMYESIG-------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HTHHHHTHHHHSH-------------HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred hhhhHHHHHHhcC-------------cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999643 789999999999998887766544444
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.46 E-value=3.6e-15 Score=152.77 Aligned_cols=336 Identities=12% Similarity=0.036 Sum_probs=217.0
Q ss_pred ccccccchHHHHHHhCCChhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHHhhhccccchH
Q 009176 26 NSNFPAYSSQLKQLLSLSQLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLFLTHTISHLSY 104 (541)
Q Consensus 26 ~Y~f~~ys~~lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~~~~~i~~~~~ 104 (541)
.+.+..+-|.+++++|+|.+|...+.....++..+ .++.|.+.||+|+|.++.+|.+...++......+ .++
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 34455566778999999999999999999999966 8999999999999999999999999998776653 246
Q ss_pred HHHHHHHHHhccccccccceeeeeecccCC-CCCceehhhHHHhhhhHHHHHHHHHHHHhcCCCCCc-ccchhhhhchhh
Q 009176 105 AHIFLLTVLAGNSICWINTVCYVVTIKNFP-FDRQVAVGITSSYLGLSAKLYTSAVNAIETSSPNKR-AKLYLLFNSIFP 182 (541)
Q Consensus 105 w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP-~~RG~a~gllk~~~GLSaaift~i~~~~~~~~~~~d-~~~fLllla~~p 182 (541)
|.+.+..++.|.+.+..+++......+.+| ++|+++.|+.-...+++..+-..+...+. +. .-...+.+....
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----TMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HhccHHHHHHHHHHH
Confidence 788888888899988888877777778887 57999999887777777666555544332 10 000000000000
Q ss_pred hHhHhhccceeeeecCCCcccccccccccCCcchhhhHHHHHHHHHHHHhhcccccccCCCCchhHHHHHHHHhhhcccc
Q 009176 183 LLACVVTSPVVREIGDHVQESSSSSRRRTRGGFVFMFFVTIVTGCYAVLGSLDLSKLKTLLPPVKNLIGIVICLLAPLVI 262 (541)
Q Consensus 183 ~~v~l~~~~~ir~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~yl~~~~~~~~~~~~~~~~~~~~~~~~~ll~~Pl~i 262 (541)
.++.. .....
T Consensus 164 ~~~~~----------------------------------------------------------------------~~~~~ 173 (375)
T 2gfp_A 164 CAGVT----------------------------------------------------------------------FSMAR 173 (375)
T ss_dssp HHHHH----------------------------------------------------------------------CCCCC
T ss_pred HHHHH----------------------------------------------------------------------HHHHH
Confidence 00000 00000
Q ss_pred ccccchhhhhhhhhhhhcccccCCCCcccccccccccCcCCccccccccCCCCCCCccCCCCccccCCHHhhhhchhHHH
Q 009176 263 PLGEKIRCFVEDKRLINRVKRVHNSTSIEEVSSRLENGVATKEEVDHQLRDDDSDGIYHGLGAKEEIGAMLMLQRVDFWL 342 (541)
Q Consensus 263 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~q~l~~~~Fwl 342 (541)
-+ ++ ++.+ + + ++ + ++..+.++.++++++|.
T Consensus 174 ~~----~~-----------~~~~-------------~-~-----------~~-~---------~~~~~~~~~~~~~~~~~ 203 (375)
T 2gfp_A 174 WM----PE-----------TRPV-------------D-A-----------PR-T---------RLLTSYKTLFGNSGFNC 203 (375)
T ss_dssp SS----CC-----------CSTT-------------T-C-----------CC-C---------CTTTCSTHHHHHHHHHH
T ss_pred HC----cc-----------cCCC-------------C-c-----------cc-c---------cHHHHHHHHhcCcchHH
Confidence 00 00 0000 0 0 00 0 01123467889999999
Q ss_pred HHHHHHHhhcccceeecchHHHHhh-hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHH
Q 009176 343 YFFVYFSGATLGLVFLNNLGQIAES-RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMA 419 (541)
Q Consensus 343 lf~~~~~g~g~Glm~I~n~g~i~~s-lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~ 419 (541)
+.+..++.......+......+.++ +|++ +.....++.++...+|++..|.+.|.. +|...+.... ...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-------~~~~~~~~~~-~~~ 275 (375)
T 2gfp_A 204 YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-------STLMWQSVIC-CLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-------HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HHH
Confidence 9888776544433333333343333 4543 344566777777778888777664321 3322211111 111
Q ss_pred HHHH--HHhh--ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcC
Q 009176 420 GAFM--LLLN--ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEG 494 (541)
Q Consensus 420 ~~~l--l~~~--~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~ 494 (541)
.+.+ .... ..+ ..+++...+.|+++|..++...+.+.|.+. ++.|+..|+......+|..+++.+.|.++|..+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 276 AGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp TSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 2211 1111 112 235567789999999999999999999998 999999999999999999999999999987543
Q ss_pred CCCCCCccccccccHHHHHHH
Q 009176 495 HNAHNGKCMGMACYRSTFILW 515 (541)
Q Consensus 495 ~~~~~~~C~G~~CY~~tF~i~ 515 (541)
|+..|.+.
T Consensus 355 -------------~~~~~~~~ 362 (375)
T 2gfp_A 355 -------------GSLGLLMT 362 (375)
T ss_dssp -------------HHHHHHHH
T ss_pred -------------ccHHHHHH
Confidence 67777764
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.33 E-value=3.5e-12 Score=136.54 Aligned_cols=144 Identities=10% Similarity=0.010 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhcCCcccc-ccchHHHHHHhC------CChhhHHHHHHhhhhhccc-chhhhhhcccc-chHHHHHHH
Q 009176 10 WLSLVGAIWLQSINGTNSNF-PAYSSQLKQLLS------LSQLQLNNLAFASDAGKLF-GWISGVASVYL-PLWLVLLIG 80 (541)
Q Consensus 10 w~~l~as~~v~~~~Gt~Y~f-~~ys~~lk~~l~------~sq~~l~~l~~~~~~G~~~-G~~~Gll~d~~-pp~~vlliG 80 (541)
|+..++..+...+. |.. +...+-+++.+| +|.+|...+.....++..+ .+++|.+.||+ |++.++.+|
T Consensus 15 ~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 15 PYIIASEACERFSF---YGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 45444444443332 222 334455788899 9999999999999999866 88999999999 999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhh---HHHhhhhHHHHHH
Q 009176 81 STLGLIGYGLQYLFLTHTISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGI---TSSYLGLSAKLYT 156 (541)
Q Consensus 81 a~~~~~GY~~~~l~~~~~i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gl---lk~~~GLSaaift 156 (541)
.+...+++.+...+- ..+|.+.+..++.|.+.+..+++......+.||+ +||++.++ .-....+++++-.
T Consensus 92 ~~~~~~~~~~~~~~~------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 92 SLIYCVGHAFLAIFE------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHTS------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887765432 1457777778888888887777776667788987 68877666 6566666665555
Q ss_pred HHHHHH
Q 009176 157 SAVNAI 162 (541)
Q Consensus 157 ~i~~~~ 162 (541)
.+...+
T Consensus 166 ~~~~~l 171 (524)
T 2xut_A 166 LSMPLL 171 (524)
T ss_dssp HTSTHH
T ss_pred HHHHHH
Confidence 544434
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.02 E-value=5.3e-10 Score=118.22 Aligned_cols=126 Identities=12% Similarity=-0.006 Sum_probs=87.2
Q ss_pred cccccch---HHHHHHhCCC--------hhhHHHHHHhhhhhccc-chhhhhhccccchHHHHHHHHHHHHHHHHHHHHH
Q 009176 27 SNFPAYS---SQLKQLLSLS--------QLQLNNLAFASDAGKLF-GWISGVASVYLPLWLVLLIGSTLGLIGYGLQYLF 94 (541)
Q Consensus 27 Y~f~~ys---~~lk~~l~~s--------q~~l~~l~~~~~~G~~~-G~~~Gll~d~~pp~~vlliGa~~~~~GY~~~~l~ 94 (541)
|+.++++ |++++.++.+ +++...+..+..+|..+ +++.|.+.||+|+|.++.++.+...+|-.+.-..
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554 5566665432 23444566667788877 7899999999999999999999888876554322
Q ss_pred hhhc-----------cccchHHHHHHHHHHhccccccccceeeeeecccCCC-CCceehhhHHHhhhhHH
Q 009176 95 LTHT-----------ISHLSYAHIFLLTVLAGNSICWINTVCYVVTIKNFPF-DRQVAVGITSSYLGLSA 152 (541)
Q Consensus 95 ~~~~-----------i~~~~~w~l~~~~~l~g~g~~~~nTa~lvt~v~NFP~-~RG~a~gllk~~~GLSa 152 (541)
..+. .-+..+|++.+.=++.|.|.+...+.+..-..+..|. +||...++.-....+..
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~ 175 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQ 175 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhh
Confidence 2111 0134678889999999998887777777777788887 68888877655554433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.72 E-value=6.7e-08 Score=102.16 Aligned_cols=176 Identities=14% Similarity=0.099 Sum_probs=132.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHHHHh-h-----hcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQIAE-S-----RGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-s-----lg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
+.+|.+++..++....-..+...+....+ . +|.+ +.....++..+.+.++.+.+|.+.|. .++|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr------~~g~r~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR------IIGARP 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TSCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cccchH
Confidence 35777777666554332223333444333 3 6765 45678899999999999999988542 025666
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCc--ccchhhhhhhhhhhhHHHHHHHH
Q 009176 410 SIGALMAPMAGAFMLLLNETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKN--FSVNHNIVVANIPIGSFLFGYLA 486 (541)
Q Consensus 410 ~l~~~~~~~~~~~ll~~~~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~--fg~nyg~~~~a~~~Gs~l~~~la 486 (541)
.+....++..++.++.+...+ ..++++-.+.|++.|..++..+++++|.|..++ -+..+++...+..+|..+++.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 666666777777776666655 467788899999999999999999999999988 78889989999999999999999
Q ss_pred HHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHhh
Q 009176 487 ALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILYAR 532 (541)
Q Consensus 487 G~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~~r 532 (541)
|.+.|..+ ++..|.+.+..++++.++.++...|
T Consensus 167 ~~l~~~~g-------------~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQEAAG-------------YHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHHSC-------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhh-------------HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 99988643 8999999988888777766555433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.70 E-value=2.7e-08 Score=103.29 Aligned_cols=175 Identities=12% Similarity=0.010 Sum_probs=130.7
Q ss_pred hchhHHHHHHHHHHhhcccceeecchHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHH
Q 009176 336 QRVDFWLYFFVYFSGATLGLVFLNNLGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGA 413 (541)
Q Consensus 336 ~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~ 413 (541)
+...++.+++..++....-.++..-+.++.+++ .+ +.....++..+...++.+.+|.+.|.. +|...+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-------g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-------NPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-------CchHHHHH
Confidence 334455555554443222222223345555566 54 456788888999999999999885532 56666666
Q ss_pred HHHHHHHHHHHHhh----ccc-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHH
Q 009176 414 LMAPMAGAFMLLLN----ETN-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAAL 488 (541)
Q Consensus 414 ~~~~~~~~~ll~~~----~~~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~ 488 (541)
..++.+++.++.+. ..+ ..+++.-.+.|++.|..++...++++|.+..|+-+...|+...+..+|..+++.++|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777666665 545 4677888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHH
Q 009176 489 VYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLALILY 530 (541)
Q Consensus 489 iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl~l~ 530 (541)
+.+..++ ++.+|++.+.++++..++.++..
T Consensus 178 l~~~~g~------------w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 178 GMAWFND------------WHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHTCC------------STTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887664 78899999988877776665553
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.44 E-value=2.7e-07 Score=98.49 Aligned_cols=171 Identities=15% Similarity=0.043 Sum_probs=122.4
Q ss_pred hhHHHHHHHHHHhhcccceeecchHH-HHhhhc------CC--cccchhhhhhhcccccccccccchhhhcccCCCCChh
Q 009176 338 VDFWLYFFVYFSGATLGLVFLNNLGQ-IAESRG------CS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSP 408 (541)
Q Consensus 338 ~~Fwllf~~~~~g~g~Glm~I~n~g~-i~~slg------~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~ 408 (541)
+.+|.+++..++....-.+....+.. +.+.+| .+ +.....++..+...++.+.+|.+.|.. .+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~------~g~r 85 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF------FGKY 85 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS------SCSH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcch
Confidence 45677766665553332223333443 344567 64 456788889999999999999885421 1444
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-c-chhHHHHHHHHHhhhccchhhHHHhhhhcCCCccc---chhhhhhhhhhhhHHHHH
Q 009176 409 ASIGALMAPMAGAFMLLLNET-N-VALYTSTAIIGVCSGAITSISVTTTTELFGTKNFS---VNHNIVVANIPIGSFLFG 483 (541)
Q Consensus 409 ~~l~~~~~~~~~~~ll~~~~~-~-~~l~~~s~liG~~yG~~~~l~P~ivse~FG~k~fg---~nyg~~~~a~~~Gs~l~~ 483 (541)
..+.+..++.+++.++.+... + ..+++.-.+.|++.|..++..+++++|.|..++-+ ..+|+...+..+|..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 86 NTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666665554 4 45777888999999999999999999999999885 456668889999999999
Q ss_pred HHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHHHHHHH
Q 009176 484 YLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFGTFLAL 527 (541)
Q Consensus 484 ~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g~~lsl 527 (541)
.++|.+.|.. . ++..|.+.+.+++++.++.+
T Consensus 166 ~~~~~l~~~~-g------------~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 166 LSMPLLLKNF-G------------AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HTSTHHHHTS-C------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-c------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999998754 2 89999999888776665544
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.35 E-value=1.5e-06 Score=89.98 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=116.9
Q ss_pred hHHHHhhhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHH---hhccc-chhH
Q 009176 361 LGQIAESRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLL---LNETN-VALY 434 (541)
Q Consensus 361 ~g~i~~slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~---~~~~~-~~l~ 434 (541)
+.++.+.+|.+ +.....++..+...++.+..|.+.|.. +|...+....++++++.++. ....+ ..++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-------SYKAGIITGLFLYALGAALFWPAAEIMNYTLFL 121 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 45566778875 356788888888999999999884422 66666666666677776655 44444 4577
Q ss_pred HHHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCC-C-----C-------c
Q 009176 435 TSTAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAH-N-----G-------K 501 (541)
Q Consensus 435 ~~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~-~-----~-------~ 501 (541)
+.-.+.|++.|..++..+++++|.+..|+-+...|+...+..+|..+++.+++.+.+......+ + . .
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYK 201 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhh
Confidence 7889999999999999999999999999999999999999999999999999999833322100 0 0 0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHH
Q 009176 502 CMGMACYRSTFILWGSFCLFGTFLALI 528 (541)
Q Consensus 502 C~G~~CY~~tF~i~~~~~~~g~~lsl~ 528 (541)
-...+.++..|++.+.++++..++.+.
T Consensus 202 ~~~~~~w~~~~~~~~~~~~~~~~~~~~ 228 (438)
T 3o7q_A 202 HSLVLSVQTPYMIIVAIVLLVALLIML 228 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 001122678888877776665555443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.34 E-value=1.4e-07 Score=96.08 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=112.3
Q ss_pred chHHHHhhhcCCc--ccchhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhhccc-chhHHH
Q 009176 360 NLGQIAESRGCSG--TSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLNETN-VALYTS 436 (541)
Q Consensus 360 n~g~i~~slg~~~--~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~~~~-~~l~~~ 436 (541)
.+..+.+++|.++ .....++..+.+.++.+..|.+.|.. +|...+.......+++.++.....+ ..+++.
T Consensus 22 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-------g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 22 AIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-------GRRPVILVGMSIFMLATLVAVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4556677777753 45688888999999999999884432 2222233344445555555444444 457778
Q ss_pred HHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHH
Q 009176 437 TAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWG 516 (541)
Q Consensus 437 s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~ 516 (541)
..+.|++.|..++..+++++|.+..|+.+...++...+..+|..+++.++|.+.|..+ ++..|.+.+
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-------------~~~~~~~~~ 161 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-------------WRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-------------HHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999987643 799999888
Q ss_pred HHHHHHHHHH
Q 009176 517 SFCLFGTFLA 526 (541)
Q Consensus 517 ~~~~~g~~ls 526 (541)
.++++..++.
T Consensus 162 ~~~~~~~~~~ 171 (375)
T 2gfp_A 162 VLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHH
Confidence 8776665533
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.11 E-value=7.6e-05 Score=77.75 Aligned_cols=167 Identities=11% Similarity=0.113 Sum_probs=96.4
Q ss_pred hhhhchhHHHHHHHHHHhhcccceeecchHHHHh-hhcCC--cccchhhhhhhcccccccccccchhhhcccCCCCChhH
Q 009176 333 LMLQRVDFWLYFFVYFSGATLGLVFLNNLGQIAE-SRGCS--GTSSLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPA 409 (541)
Q Consensus 333 q~l~~~~Fwllf~~~~~g~g~Glm~I~n~g~i~~-slg~~--~~~~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~ 409 (541)
..+|+++||.+...+++....--++..-+....+ .+|.+ +....+++..+...+|++.+|.++|.. +|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-------Grr~ 74 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-------GLRK 74 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-------TTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cchH
Confidence 4688999999887665543332233334444343 46775 456788999999999999999985532 2222
Q ss_pred HHHHHHHHHHH---HHHHHhhccc--chhHHHHHHH----HHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHH
Q 009176 410 SIGALMAPMAG---AFMLLLNETN--VALYTSTAII----GVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSF 480 (541)
Q Consensus 410 ~l~~~~~~~~~---~~ll~~~~~~--~~l~~~s~li----G~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~ 480 (541)
.+.+......+ ..+....... ..+.....+. |++++...++....+.|. .++.+..+|.......+|..
T Consensus 75 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~ 152 (417)
T 2cfq_A 75 YLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWA 152 (417)
T ss_dssp HHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHH
Confidence 22222222111 1111111100 0122222233 333444444444444443 25667788888888889999
Q ss_pred HHHHHHHHHhhhcCCCCCCCccccccccHHHHHHHHHHHHHH
Q 009176 481 LFGYLAALVYHKEGHNAHNGKCMGMACYRSTFILWGSFCLFG 522 (541)
Q Consensus 481 l~~~laG~iyD~~~~~~~~~~C~G~~CY~~tF~i~~~~~~~g 522 (541)
+++.++|.+.|. . ++..|++.+..+++.
T Consensus 153 ~~~~l~~~l~~~--~------------~~~~f~~~~~~~~~~ 180 (417)
T 2cfq_A 153 LGASIVGIMFTI--N------------NQFVFWLGSGCALIL 180 (417)
T ss_dssp HHHHHHHHHHHH--C------------SHHHHTTTTTTTTTH
T ss_pred HHHHHHHHHHHh--c------------hhHHHHHHHHHHHHH
Confidence 999999999874 3 688888776654333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.47 E-value=0.0047 Score=64.64 Aligned_cols=111 Identities=11% Similarity=-0.070 Sum_probs=85.5
Q ss_pred chhhhhhhcccccccccccchhhhcccCCCCChhHHHHHHHHHHHHHHHHHhh------------------ccc-chhHH
Q 009176 375 SLVSLSSSFGFFGRLIPSLFGYFFSRSKHMIPSPASIGALMAPMAGAFMLLLN------------------ETN-VALYT 435 (541)
Q Consensus 375 ~~Vsl~Si~N~~GRl~~G~~s~~~~~~~~~~~R~~~l~~~~~~~~~~~ll~~~------------------~~~-~~l~~ 435 (541)
..+|...+...+|-+++|+++|. ++|...+.+..+++.++-++.++ ..+ ..+.+
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr-------~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~ 131 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNR-------FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI 131 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHH-------TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence 45566666677777788888553 27888877777777777655542 223 35777
Q ss_pred HHHHHHHhhhccchhhHHHhhhhcCCCcccchhhhhhhhhhhhHHHHHHHHHHHhhh
Q 009176 436 STAIIGVCSGAITSISVTTTTELFGTKNFSVNHNIVVANIPIGSFLFGYLAALVYHK 492 (541)
Q Consensus 436 ~s~liG~~yG~~~~l~P~ivse~FG~k~fg~nyg~~~~a~~~Gs~l~~~laG~iyD~ 492 (541)
+=.+.|++-|+..++.|++++|....++-+..-++...+..+|..+...+...+.+.
T Consensus 132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 889999999999999999999999999999999999999999888877666655543
Done!