BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009177
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 1 MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC 60
+L A S Y + L ++ K D+ +++SN G ++ E F Y ++ NV +
Sbjct: 45 VLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMYTAKLSLSPENVDDVLA 98
Query: 61 AAEFLQMTD 69
A FLQM D
Sbjct: 99 VATFLQMQD 107
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 33.9 bits (76), Expect = 0.23, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 1 MLVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRC 60
+L A S Y + L ++ K D+ +++SN G ++ E F Y ++ NV +
Sbjct: 43 VLAACSEYFKMLFVDQK--DVVHLDISNAAGLGQVLE----FMYTAKLSLSPENVDDVLA 96
Query: 61 AAEFLQMTD 69
A FLQM D
Sbjct: 97 VATFLQMQD 105
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 1 MLVAKSNYIRKLIIESKEADLTRINLSNIPGG--PEMFEKAAKFCYGVNFEITVHNVAAL 58
+L A S+Y R L S+ A + +P P+ F++ FCY + V + L
Sbjct: 51 VLAASSSYFRDLFNNSRSA------VVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLL 104
Query: 59 RCAAEFLQMTD 69
A FLQ+ +
Sbjct: 105 MYTAGFLQIQE 115
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 310 DFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAID 369
DF+ S SP +++ K +G Y + T +S + +VD+D++R
Sbjct: 129 DFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEGPDYEVDEDIFRKKR 188
Query: 370 I-YLKAHPNLDEIER 383
+ + HP + +R
Sbjct: 189 LTIMDLHPGAGKTKR 203
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 310 DFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAID 369
DF+ S SP +++ K +G Y + T +S A + + +VD+D++R
Sbjct: 129 DFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQ-AERIGEPDYEVDEDIFRKKR 187
Query: 370 I-YLKAHPNLDEIER 383
+ + HP + +R
Sbjct: 188 LTIMDLHPGAGKTKR 202
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 310 DFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAID 369
DF+ S SP +++ K +G Y + T +S A + + +VD+D++R
Sbjct: 129 DFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQ-AERIGEPDYEVDEDIFRKKR 187
Query: 370 I-YLKAHPNLDEIER 383
+ + HP + +R
Sbjct: 188 LTIMDLHPGAGKTKR 202
>pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab
pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex
Length = 832
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 348 GIANLVPKGSRKVDDDLYRAIDIYLKAHPNLDEIE---REKICSSMDPLKLSYE 398
G+ + K +RK+ ++ + +++ LK NLD ++ REKI + MD LKLS++
Sbjct: 195 GVKGIGEKTARKLLEE-WGSLEALLK---NLDRLKPAIREKILAHMDDLKLSWD 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,549,909
Number of Sequences: 62578
Number of extensions: 490509
Number of successful extensions: 1201
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1200
Number of HSP's gapped (non-prelim): 8
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)