Query 009177
Match_columns 541
No_of_seqs 205 out of 388
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:21:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 1.9E-91 4.1E-96 700.9 22.8 257 138-400 1-258 (258)
2 PF00651 BTB: BTB/POZ domain; 98.2 2.9E-06 6.3E-11 72.8 5.8 78 2-87 30-110 (111)
3 smart00225 BTB Broad-Complex, 97.8 2.9E-05 6.2E-10 62.5 4.7 66 2-69 18-84 (90)
4 PHA03098 kelch-like protein; P 97.7 0.00013 2.8E-09 80.1 10.3 148 2-179 30-180 (534)
5 KOG4441 Proteins containing BT 97.4 0.0024 5.2E-08 71.9 14.8 200 2-258 55-260 (571)
6 PHA02713 hypothetical protein; 97.2 0.0014 3E-08 73.4 9.8 147 2-177 45-197 (557)
7 PHA02790 Kelch-like protein; P 96.9 0.0013 2.8E-08 72.2 6.0 96 2-113 40-136 (480)
8 PF11822 DUF3342: Domain of un 92.3 0.082 1.8E-06 55.7 2.3 79 1-86 22-102 (317)
9 smart00512 Skp1 Found in Skp1 82.3 2.7 5.9E-05 36.7 5.1 62 4-67 22-104 (104)
10 KOG2075 Topoisomerase TOP1-int 73.6 32 0.00069 38.6 11.1 150 6-179 142-294 (521)
11 PF14363 AAA_assoc: Domain ass 56.9 7 0.00015 34.2 1.8 42 353-395 30-71 (98)
12 PF04508 Pox_A_type_inc: Viral 53.6 11 0.00023 25.3 1.8 16 461-476 2-17 (23)
13 KOG4350 Uncharacterized conser 40.5 41 0.00089 37.3 4.8 81 2-87 63-144 (620)
14 PF03931 Skp1_POZ: Skp1 family 39.5 27 0.00058 27.9 2.5 38 4-44 21-58 (62)
15 PF07407 Seadorna_VP6: Seadorn 37.5 36 0.00078 36.6 3.7 31 446-476 32-62 (420)
16 KOG4682 Uncharacterized conser 36.5 52 0.0011 36.4 4.8 69 1-69 86-157 (488)
17 PF10929 DUF2811: Protein of u 29.8 39 0.00084 27.5 1.9 19 362-380 8-26 (57)
18 COG3510 CmcI Cephalosporin hyd 29.6 41 0.00089 34.0 2.5 36 349-384 182-219 (237)
19 KOG0783 Uncharacterized conser 29.2 62 0.0014 38.9 4.2 87 2-116 577-676 (1267)
20 PF01166 TSC22: TSC-22/dip/bun 27.3 49 0.0011 27.0 2.1 28 450-477 11-38 (59)
21 PF02183 HALZ: Homeobox associ 26.1 88 0.0019 24.0 3.2 23 447-469 20-42 (45)
22 PF06156 DUF972: Protein of un 25.4 90 0.002 28.2 3.7 30 447-476 30-59 (107)
23 KOG3473 RNA polymerase II tran 25.2 1.6E+02 0.0035 26.7 5.1 60 5-66 38-111 (112)
24 PRK14127 cell division protein 24.9 1.1E+02 0.0023 28.0 4.1 31 447-477 38-68 (109)
25 PHA03098 kelch-like protein; P 24.7 4.1E+02 0.009 29.4 9.6 150 213-404 57-211 (534)
26 COG4467 Regulator of replicati 22.2 65 0.0014 29.4 2.2 30 447-476 30-61 (114)
27 PF11336 DUF3138: Protein of u 22.2 77 0.0017 35.4 3.1 25 452-476 24-48 (514)
28 PF10932 DUF2783: Protein of u 22.0 75 0.0016 26.1 2.3 22 361-385 10-31 (60)
29 PF13764 E3_UbLigase_R4: E3 ub 21.7 64 0.0014 38.6 2.6 50 329-378 278-335 (802)
30 PF11123 DNA_Packaging_2: DNA 21.5 63 0.0014 27.8 1.8 16 362-377 31-46 (82)
31 PF10473 CENP-F_leu_zip: Leuci 21.4 1.2E+02 0.0026 28.7 3.9 30 447-476 74-103 (140)
32 PRK13182 racA polar chromosome 21.4 1.2E+02 0.0027 29.6 4.1 28 449-476 121-148 (175)
33 PF05377 FlaC_arch: Flagella a 20.2 1.4E+02 0.0031 24.1 3.5 25 449-473 17-41 (55)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=1.9e-91 Score=700.86 Aligned_cols=257 Identities=42% Similarity=0.692 Sum_probs=226.8
Q ss_pred CCccccccccCChhHHHHHHHHHHHcCCChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHH
Q 009177 138 PNWWTEELSIIDIEFFSRIIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLES 217 (541)
Q Consensus 138 ~dWW~eDl~~L~~~~f~rvi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEt 217 (541)
.|||||||+.|++++|+|||.+|+++||+|++||++|++||+||||++.+.. .+.... ....+....+||.+||+
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~-~~~~~~----~~~~~~~~~~~r~llEt 75 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSS-SGSSSS----AESSTSSENEQRELLET 75 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCccccc-cccccc----ccccchhHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999985432 111111 12335667899999999
Q ss_pred HHhhCCCCCCCcchHHHHHHHHHHHhccCCHHHHHHHHHHHHhhhcccCcccccccccCCCC-CcccchHHHHHHHHHHH
Q 009177 218 IVSLMPSEKAAFPINFLCCLLRSAIFLKASTSCKNELEKRVSAILEHVSVDDLLVLSFTYDG-ERLFDLESVRKIISGFV 296 (541)
Q Consensus 218 iv~lLP~~k~~vs~~fL~~LLr~A~~l~as~~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~-~tlyDvd~V~Ril~~Fl 296 (541)
||+|||.+|+++||+|||+|||+|++++||..||.+||+|||.|||||||||||||+ ++.+ +|+||||+|+|||++||
T Consensus 76 iV~lLP~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~-~~~~~~t~yDVd~V~riv~~Fl 154 (258)
T PF03000_consen 76 IVSLLPPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPS-SPSGEDTLYDVDLVQRIVEHFL 154 (258)
T ss_pred HHHhCCCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccC-CCCcccchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 4444 49999999999999999
Q ss_pred hhhccccccCCCCCccccCCCchhHHHHHhhhhhhhhhhcCCCCCChhHHHHHHHhcCCCCccccchHHHHHHHHHHhCC
Q 009177 297 EKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHP 376 (541)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~sKF~~LAe~lPd~AR~~~DgLYRAIDiYLKaHp 376 (541)
.+++..............+++..++.+||||||+||+|||+|+||+|+||++|||++|++||++|||||||||||||+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 155 SQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred hcccccccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 98643211111111112356789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhhhhccccCCCCCHHHH
Q 009177 377 NLDEIEREKICSSMDPLKLSYEAR 400 (541)
Q Consensus 377 ~Lse~Er~~lCr~mdcqKLS~EAc 400 (541)
+||++||++||++|||||||+|||
T Consensus 235 ~ls~~Er~~lC~~ldc~KLS~EAC 258 (258)
T PF03000_consen 235 GLSEEERKRLCRLLDCQKLSPEAC 258 (258)
T ss_pred cCCHHHHHHHHhhCCcccCCcccC
Confidence 999999999999999999999999
No 2
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=98.18 E-value=2.9e-06 Score=72.85 Aligned_cols=78 Identities=36% Similarity=0.527 Sum_probs=69.0
Q ss_pred CcccchHHHHHHhhcc--cCCcceeeccCCCCCHHHHHHHHHHhcCcccccc-cchHHHHHhhHHHhcCcccccCCchhH
Q 009177 2 LVAKSNYIRKLIIESK--EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEIT-VHNVAALRCAAEFLQMTDKYCENNLAG 78 (541)
Q Consensus 2 L~srSg~l~kli~~~~--~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit-~~NVa~LrCAAeyLeMtE~~~~~NLi~ 78 (541)
|.++|.|+++++...+ +....+|.+++++ +++|+...+|||+..++++ ..|+..+..+|.+++|.+ |..
T Consensus 30 L~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~ 101 (111)
T PF00651_consen 30 LAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKK 101 (111)
T ss_dssp HHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHH
T ss_pred hhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHH
Confidence 6789999999999873 3334578888888 8899999999999999998 999999999999999997 899
Q ss_pred HHHHHhhhh
Q 009177 79 RTEDFLSQV 87 (541)
Q Consensus 79 ktE~fL~~v 87 (541)
.++.||.+.
T Consensus 102 ~~~~~l~~~ 110 (111)
T PF00651_consen 102 ACEKFLQES 110 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999999763
No 3
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=97.80 E-value=2.9e-05 Score=62.53 Aligned_cols=66 Identities=27% Similarity=0.400 Sum_probs=55.9
Q ss_pred CcccchHHHHHHhhccc-CCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcc
Q 009177 2 LVAKSNYIRKLIIESKE-ADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTD 69 (541)
Q Consensus 2 L~srSg~l~kli~~~~~-~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE 69 (541)
|.++|.++++++..... .....|.+.| ..+++|+.+-+|||+.++.+++.|+..+..+|+|++|.+
T Consensus 18 L~~~s~~f~~~~~~~~~~~~~~~i~l~~--~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~ 84 (90)
T smart00225 18 LAACSPYFKALFSGDFKESKKSEIYLDD--VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPG 84 (90)
T ss_pred HhhcCHHHHHHHcCCCccCCCCEEEecC--CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHH
Confidence 56789999999986442 2345676766 569999999999999999999999999999999999976
No 4
>PHA03098 kelch-like protein; Provisional
Probab=97.75 E-value=0.00013 Score=80.05 Aligned_cols=148 Identities=14% Similarity=0.210 Sum_probs=103.3
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++.|+...-. ..+|+|.+ -+++|+.+.+|-|..+++|+..||..|--||.+|+|.+ |....+
T Consensus 30 Laa~S~yF~~mf~~~~~--~~~i~l~~---~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~ 98 (534)
T PHA03098 30 LSSSSEYFKKMFKNNFK--ENEINLNI---DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCI 98 (534)
T ss_pred HHhhhHHHHHHHhCCCC--CceEEecC---CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 67899999999986433 35677776 68999999999999999999999999999999999998 899999
Q ss_pred HHhhhhhccChhHHHHHHHhhhhcccchhhh---hhHHHHHHHHHHHHccccCCCCCCCCCccccccccCChhHHHHHHH
Q 009177 82 DFLSQVALSSLSGAVVVLKSCEALLPLAEDL---LIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSRIIA 158 (541)
Q Consensus 82 ~fL~~vvl~sW~dsi~vLksce~llp~AE~l---~Iv~RCidsla~kac~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~ 158 (541)
.||.+.+ +- ..|-.++..|+.. .+.+.|.+-|+..... . . . .+|...|+.+....++.
T Consensus 99 ~~l~~~l--~~-------~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-v--~-~------~~~f~~l~~~~l~~ll~ 159 (534)
T PHA03098 99 NYIIKII--DD-------NNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-I--Y-N------DPDFIYLSKNELIKILS 159 (534)
T ss_pred HHHHHhC--CH-------hHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-H--h-c------CchhhcCCHHHHHHHhc
Confidence 9998754 22 3455555555543 3566777766654210 0 0 0 14566777776666544
Q ss_pred HHHHcCCChhhHHHHHHHHHH
Q 009177 159 AMKKRGAKALTIASALITYTE 179 (541)
Q Consensus 159 am~~~g~~~~~i~~~l~~Ya~ 179 (541)
.=.-.--+++.+-.+++.+++
T Consensus 160 ~~~L~v~~E~~v~~av~~W~~ 180 (534)
T PHA03098 160 DDKLNVSSEDVVLEIIIKWLT 180 (534)
T ss_pred CCCcCcCCHHHHHHHHHHHHh
Confidence 311111256667777766543
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.43 E-value=0.0024 Score=71.91 Aligned_cols=200 Identities=27% Similarity=0.369 Sum_probs=135.8
Q ss_pred CcccchHHHHHHhh-cccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIE-SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~-~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.+-|.|++-++.. -++....+|+|.+ .-++++++...|+|..+++||..||-.|--||.+|+|++ +..-.
T Consensus 55 LAa~S~YFraMFt~~l~e~~~~~i~l~~--v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C 126 (571)
T KOG4441|consen 55 LAACSPYFRAMFTSGLKESKQKEINLEG--VDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDAC 126 (571)
T ss_pred HHhccHHHHHHhcCCcccccceEEEEec--CCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHH
Confidence 67789999999985 3455667899999 778999999999999999999999999999999999998 68888
Q ss_pred HHHhhhhhccChhHHHH-----HHHhhhhcccchhhhhhHHHHHHHHHHHHccccCCCCCCCCCccccccccCChhHHHH
Q 009177 81 EDFLSQVALSSLSGAVV-----VLKSCEALLPLAEDLLIVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSR 155 (541)
Q Consensus 81 E~fL~~vvl~sW~dsi~-----vLksce~llp~AE~l~Iv~RCidsla~kac~~~~~~~~~~~dWW~eDl~~L~~~~f~r 155 (541)
-.||.+-+.. ..++. -+.+|..|...|.+. |.+..++. |=.||.-.|+.+.+..
T Consensus 127 ~~fL~~~l~~--~Nclgi~~~a~~~~~~~L~~~a~~~-i~~~F~~v------------------~~~eefl~L~~~~l~~ 185 (571)
T KOG4441|consen 127 CEFLESQLDP--SNCLGIRRFAELHSCTELLEVADEY-ILQHFAEV------------------SKTEEFLLLSLEELIG 185 (571)
T ss_pred HHHHHhcCCH--HHHHHHHHHHHhcCcHHHHHHHHHH-HHHHHHHH------------------hccHHhhCCCHHHHHh
Confidence 8899875532 23333 235666666665532 33333322 2235556688777777
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhCCCCCCCcchHHHH
Q 009177 156 IIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEKAAFPINFLC 235 (541)
Q Consensus 156 vi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~lLP~~k~~vs~~fL~ 235 (541)
+|..-.-..-+++.+..++ -+|+.. + ...+..+-.-|-..|++ .-+|-+||.
T Consensus 186 ll~~d~l~v~~E~~vf~a~----~~Wv~~---d----------------~~~R~~~~~~ll~~vr~-----~ll~~~~l~ 237 (571)
T KOG4441|consen 186 LLSSDDLNVDSEEEVFEAA----MRWVKH---D----------------FEEREEHLPALLEAVRL-----PLLPPQFLV 237 (571)
T ss_pred hccccCCCcCCHHHHHHHH----HHHHhc---C----------------HhhHHHHHHHHHHhcCc-----cCCCHHHHH
Confidence 7666554444555645444 455531 0 00111111111122222 357788999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHH
Q 009177 236 CLLRSAIFLKASTSCKNELEKRV 258 (541)
Q Consensus 236 ~LLr~A~~l~as~~cr~~LE~rI 258 (541)
......-.+.....|+.-|..=.
T Consensus 238 ~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 238 EIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred HHHhhhhhhccCHHHHHHHHHHH
Confidence 99999999999999998876644
No 6
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.0014 Score=73.37 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=95.8
Q ss_pred CcccchHHHHHHhhc-ccC-CcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHH
Q 009177 2 LVAKSNYIRKLIIES-KEA-DLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGR 79 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~-~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~k 79 (541)
|.+.|.||+.|+... +++ ...+|+|.++ -+++|+.+.+|.|..+ ||+.||-.|--||.||+|++ |...
T Consensus 45 Laa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~ 114 (557)
T PHA02713 45 LAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTD 114 (557)
T ss_pred HhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHH
Confidence 678999999999753 222 2457889887 4899999999999876 79999999999999999998 8999
Q ss_pred HHHHhhhhhccChhHHHHHHHhhhhcccchhhhhhHHHHHHHHHHH---HccccCCCCCCCCCccccccccCChhHHHHH
Q 009177 80 TEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAK---ACYEANFPCRTPPNWWTEELSIIDIEFFSRI 156 (541)
Q Consensus 80 tE~fL~~vvl~sW~dsi~vLksce~llp~AE~l~Iv~RCidsla~k---ac~~~~~~~~~~~dWW~eDl~~L~~~~f~rv 156 (541)
.+.||.+.+- -..++.+++...... ...+...|-+-|+.. ++. .|+...|+.+....+
T Consensus 115 C~~~l~~~l~--~~NCl~i~~~~~~~~----~~~L~~~a~~~i~~~f~~v~~-------------~~ef~~L~~~~l~~l 175 (557)
T PHA02713 115 CESYIKDYTN--HDTCIYMYHRLYEMS----HIPIVKYIKRMLMSNIPTLIT-------------TDAFKKTVFEILFDI 175 (557)
T ss_pred HHHHHHhhCC--ccchHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHhC-------------ChhhhhCCHHHHHHH
Confidence 9999987653 335555543211110 011223333333222 111 155667777766666
Q ss_pred HHHHHHcCC-ChhhHHHHHHHH
Q 009177 157 IAAMKKRGA-KALTIASALITY 177 (541)
Q Consensus 157 i~am~~~g~-~~~~i~~~l~~Y 177 (541)
|..=..-.+ +.+.|-++++.+
T Consensus 176 L~~d~~l~v~~Ee~v~eav~~W 197 (557)
T PHA02713 176 ISTNDNVYLYREGYKVTILLKW 197 (557)
T ss_pred hccccccCCCcHHHHHHHHHHH
Confidence 553111123 566777776654
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=96.92 E-value=0.0013 Score=72.21 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=73.4
Q ss_pred CcccchHHHHHHhhc-ccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.+-|.||+.|+... .+++ .+|.+..+--.+++++.+..|-|..+++||..||-.|-.||.||+|++ ++...
T Consensus 40 LAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C 112 (480)
T PHA02790 40 LKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTC 112 (480)
T ss_pred hhhcCHHHHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHH
Confidence 678899999999752 2222 245553223458999999999999999999999999999999999998 79999
Q ss_pred HHHhhhhhccChhHHHHHHHhhhhcccchhhhh
Q 009177 81 EDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL 113 (541)
Q Consensus 81 E~fL~~vvl~sW~dsi~vLksce~llp~AE~l~ 113 (541)
..||.+.+-. ..|-.+..+|+..+
T Consensus 113 ~~fL~~~l~~---------~NCl~i~~~A~~y~ 136 (480)
T PHA02790 113 INFILRDFRK---------EYCVECYMMGIEYG 136 (480)
T ss_pred HHHHHhhCCc---------chHHHHHHHHHHhC
Confidence 9999986633 23444445555543
No 8
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=92.26 E-value=0.082 Score=55.67 Aligned_cols=79 Identities=22% Similarity=0.370 Sum_probs=59.3
Q ss_pred CCcccchHHHHHHhh--cccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhH
Q 009177 1 MLVAKSNYIRKLIIE--SKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAG 78 (541)
Q Consensus 1 PL~srSg~l~kli~~--~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ 78 (541)
+|++.=+|++..+.. ........|+|+ +-=.-.+||.-.++++|-...|||.||+++---++||+|++ |++
T Consensus 22 lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~------Lve 94 (317)
T PF11822_consen 22 LLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMES------LVE 94 (317)
T ss_pred HHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHH------HHH
Confidence 366777899999864 111122233332 12234799999999999999999999999999999999997 888
Q ss_pred HHHHHhhh
Q 009177 79 RTEDFLSQ 86 (541)
Q Consensus 79 ktE~fL~~ 86 (541)
.+=.|...
T Consensus 95 ~cl~y~~~ 102 (317)
T PF11822_consen 95 ECLQYCHD 102 (317)
T ss_pred HHHHHHHH
Confidence 88888755
No 9
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=82.26 E-value=2.7 Score=36.73 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=42.6
Q ss_pred ccchHHHHHHhhcccCC--cceeeccCCCCCHHHHHHHHHHhcCcc---c----------------ccccchHHHHHhhH
Q 009177 4 AKSNYIRKLIIESKEAD--LTRINLSNIPGGPEMFEKAAKFCYGVN---F----------------EITVHNVAALRCAA 62 (541)
Q Consensus 4 srSg~l~kli~~~~~~~--~~~i~L~d~PGGaeaFEl~akFCYG~~---i----------------eit~~NVa~LrCAA 62 (541)
..|+.|+.++.+....+ ...|.|++++ +.+++++..||+--+ . .+...++--|-.||
T Consensus 22 ~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AA 99 (104)
T smart00512 22 RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAA 99 (104)
T ss_pred HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHH
Confidence 46888999998754222 1357677776 689999999998321 0 14555677778888
Q ss_pred HHhcC
Q 009177 63 EFLQM 67 (541)
Q Consensus 63 eyLeM 67 (541)
.||++
T Consensus 100 nyL~I 104 (104)
T smart00512 100 NYLDI 104 (104)
T ss_pred HhhCC
Confidence 88874
No 10
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=73.59 E-value=32 Score=38.63 Aligned_cols=150 Identities=15% Similarity=0.254 Sum_probs=100.4
Q ss_pred chHHHHHHhhcccC-CcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHHHHh
Q 009177 6 SNYIRKLIIESKEA-DLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTEDFL 84 (541)
Q Consensus 6 Sg~l~kli~~~~~~-~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~fL 84 (541)
|.-+-+|+...-.. ...+|+++|+ -+.+|+---||=|+-.+.+-+.||-.+.=||. .|-.+-|...+-+||
T Consensus 142 S~VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L~flYsdev~~~~dtvi~tl~~Ak------KY~VpaLer~CVkfl 213 (521)
T KOG2075|consen 142 SDVFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFLRFLYSDEVKLAADTVITTLYAAK------KYLVPALERQCVKFL 213 (521)
T ss_pred hHHHHHHhccCcccccCceeecCCc--ChhHhHHHHHHHhcchhhhhHHHHHHHHHHHH------HhhhHHHHHHHHHHH
Confidence 33445555543222 2568888887 48999999999999999999999988877764 233566888888999
Q ss_pred hhhhccChhHHHHHHHhhhhcccchhhhhhHHHHHHHHHHHH--ccccCCCCCCCCCccccccccCChhHHHHHHHHHHH
Q 009177 85 SQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATAKA--CYEANFPCRTPPNWWTEELSIIDIEFFSRIIAAMKK 162 (541)
Q Consensus 85 ~~vvl~sW~dsi~vLksce~llp~AE~l~Iv~RCidsla~ka--c~~~~~~~~~~~dWW~eDl~~L~~~~f~rvi~am~~ 162 (541)
....+. .....-|-+|-.++ ++=.+.++|++.|...+ |.+ .=||-|.-.+ .++|..|+.. ..
T Consensus 214 r~~l~~--~naf~~L~q~A~lf---~ep~Li~~c~e~id~~~~~al~---------~EGf~did~~-~dt~~evl~r-~~ 277 (521)
T KOG2075|consen 214 RKNLMA--DNAFLELFQRAKLF---DEPSLISICLEVIDKSFEDALT---------PEGFCDIDST-RDTYEEVLRR-DT 277 (521)
T ss_pred HHhcCC--hHHHHHHHHHHHhh---cCHHHHHHHHHHhhhHHHhhhC---------ccceeehhhH-HHHHHHHHhh-cc
Confidence 886543 45566666775554 45559999999997532 222 2366666555 7777666532 11
Q ss_pred cCCChhhHHHHHHHHHH
Q 009177 163 RGAKALTIASALITYTE 179 (541)
Q Consensus 163 ~g~~~~~i~~~l~~Ya~ 179 (541)
..++.-.+.+++..|++
T Consensus 278 l~~~e~~lfeA~lkw~~ 294 (521)
T KOG2075|consen 278 LEAREFRLFEAALKWAE 294 (521)
T ss_pred cchhHHHHHHHHHhhcc
Confidence 33555566666666654
No 11
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=56.91 E-value=7 Score=34.23 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=32.8
Q ss_pred cCCCCccccchHHHHHHHHHHhCCCCCHHHHhhhhccccCCCC
Q 009177 353 VPKGSRKVDDDLYRAIDIYLKAHPNLDEIEREKICSSMDPLKL 395 (541)
Q Consensus 353 lPd~AR~~~DgLYRAIDiYLKaHp~Lse~Er~~lCr~mdcqKL 395 (541)
+|++..-....+|+|+..||.+....+. .|-++++.-|.+.+
T Consensus 30 I~E~~g~~~N~ly~a~~~YL~s~~s~~a-~rL~~~~~~~~~~~ 71 (98)
T PF14363_consen 30 IPEFDGLSRNELYDAAQAYLSSKISPSA-RRLKASKSKNSKNL 71 (98)
T ss_pred EEeCCCccccHHHHHHHHHHhhccCccc-ceeeecccCCCCce
Confidence 3444456678999999999999987775 88888888776664
No 12
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=53.61 E-value=11 Score=25.34 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhc
Q 009177 461 ELTRMKLYISDVQKGN 476 (541)
Q Consensus 461 el~~Mr~rv~eLEk~c 476 (541)
||++.|.|+++||++.
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7899999999999874
No 13
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=40.53 E-value=41 Score=37.27 Aligned_cols=81 Identities=20% Similarity=0.378 Sum_probs=61.5
Q ss_pred CcccchHHHHHHhhcc-cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESK-EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~-~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|..||.|+|.|+..-- ++....|-|.+ -.+|||-..-|+-|..++.++-----. --+||.|.-.|+---|-..+
T Consensus 63 LAaRs~yFRAlLYgGm~Es~q~~ipLq~--t~~eAF~~lLrYiYtg~~~l~~~~ed~---lld~LslAh~Ygf~~Le~ai 137 (620)
T KOG4350|consen 63 LAARSSYFRALLYGGMQESHQQLIPLQE--TNSEAFRALLRYIYTGKIDLAGVEEDI---LLDYLSLAHRYGFIQLETAI 137 (620)
T ss_pred HHHHHHHHHHHHhhhhhhhhhccccccc--ccHHHHHHHHHHHhhcceecccchHHH---HHHHHHHHHhcCcHHHHHHH
Confidence 6789999999997521 22222333322 358999999999999999987655433 35899999999988999999
Q ss_pred HHHhhhh
Q 009177 81 EDFLSQV 87 (541)
Q Consensus 81 E~fL~~v 87 (541)
-.||.++
T Consensus 138 SeYl~~i 144 (620)
T KOG4350|consen 138 SEYLKEI 144 (620)
T ss_pred HHHHHHH
Confidence 9999884
No 14
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=39.51 E-value=27 Score=27.91 Aligned_cols=38 Identities=21% Similarity=0.468 Sum_probs=29.5
Q ss_pred ccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhc
Q 009177 4 AKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCY 44 (541)
Q Consensus 4 srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCY 44 (541)
..|+.|+.++.+..+.+. .|.|+++. +++++++..+|+
T Consensus 21 ~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 21 KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 468999999987665444 68788776 479999999997
No 15
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=37.49 E-value=36 Score=36.55 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=26.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 446 QADVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 446 ~~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
++-..++.||..||.|.+.+|.+|..||.+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 4557789999999999999999999998775
No 16
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=36.47 E-value=52 Score=36.41 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=58.6
Q ss_pred CCcccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcc
Q 009177 1 MLVAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTD 69 (541)
Q Consensus 1 PL~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE 69 (541)
|-+.-|+|+..|+...- ..+...++|+|=--.+.||..|-+==|-..|||.++-|+.+-.||.+|...-
T Consensus 86 ~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldg 157 (488)
T KOG4682|consen 86 PYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDG 157 (488)
T ss_pred eeeeccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhh
Confidence 44678999999998653 2334567888988999999999999999999999999999999999998654
No 17
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=29.78 E-value=39 Score=27.46 Aligned_cols=19 Identities=37% Similarity=0.791 Sum_probs=16.4
Q ss_pred chHHHHHHHHHHhCCCCCH
Q 009177 362 DDLYRAIDIYLKAHPNLDE 380 (541)
Q Consensus 362 DgLYRAIDiYLKaHp~Lse 380 (541)
--||.|+.-||+.||+-..
T Consensus 8 e~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 8 EDLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHHcCCCchH
Confidence 3699999999999998754
No 18
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=29.59 E-value=41 Score=33.98 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=27.3
Q ss_pred HHHhcC--CCCccccchHHHHHHHHHHhCCCCCHHHHh
Q 009177 349 IANLVP--KGSRKVDDDLYRAIDIYLKAHPNLDEIERE 384 (541)
Q Consensus 349 LAe~lP--d~AR~~~DgLYRAIDiYLKaHp~Lse~Er~ 384 (541)
+.+-+| +..+..-+|=|+||.-|||.||+==|.++.
T Consensus 182 ~v~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yEiD~~ 219 (237)
T COG3510 182 NVNDLPGPVLPWRFGGGPYEAVEAYLREFPQDYEIDTS 219 (237)
T ss_pred cccCCCCcccchhcCCChHHHHHHHHHhCCcccccchh
Confidence 345566 556667999999999999999975555554
No 19
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=29.23 E-value=62 Score=38.88 Aligned_cols=87 Identities=28% Similarity=0.497 Sum_probs=56.0
Q ss_pred CcccchHHHHHHhhccc-------------CCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCc
Q 009177 2 LVAKSNYIRKLIIESKE-------------ADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMT 68 (541)
Q Consensus 2 L~srSg~l~kli~~~~~-------------~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMt 68 (541)
|+++|..||+|+-.-++ ...++|.+.|+|| .+||+.-.|-|--+ -+.|.--=-.-|.+-
T Consensus 577 l~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p--~mfe~lL~~iYtdt-~~~P~heDdidci~f----- 648 (1267)
T KOG0783|consen 577 LCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP--LMFEILLHYIYTDT-LLSPWHEDDIDCIRF----- 648 (1267)
T ss_pred EEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH--HHHHHHHHHHhccc-ccCCccccchhhhhc-----
Confidence 67899999999975332 2346677889995 78999999999754 345511111112111
Q ss_pred ccccCCchhHHHHHHhhhhhccChhHHHHHHHhhhhcccchhhhhhHH
Q 009177 69 DKYCENNLAGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQ 116 (541)
Q Consensus 69 E~~~~~NLi~ktE~fL~~vvl~sW~dsi~vLksce~llp~AE~l~Iv~ 116 (541)
+..+.|+..|| ++|+-|.|.+|..++++
T Consensus 649 -s~~k~N~~qrt-------------------rtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 649 -SPLKENLSQRT-------------------RTCEMLANLLEKFHLAE 676 (1267)
T ss_pred -cccccChhhcc-------------------cHHHHHHHHHhhhhHHh
Confidence 12356766643 57888888888766654
No 20
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=27.26 E-value=49 Score=27.02 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009177 450 LLIKENEALRSELTRMKLYISDVQKGNN 477 (541)
Q Consensus 450 ~~~ren~~Lk~el~~Mr~rv~eLEk~c~ 477 (541)
.++.|.+.||..|..+..|+.+||.|+.
T Consensus 11 AVrEEVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 11 AVREEVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp T-TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999973
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.10 E-value=88 Score=24.05 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH
Q 009177 447 ADVLLIKENEALRSELTRMKLYI 469 (541)
Q Consensus 447 ~~~~~~ren~~Lk~el~~Mr~rv 469 (541)
++.++.+||+.|+.++..++.++
T Consensus 20 ~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 20 EYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.37 E-value=90 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 447 ADVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 447 ~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
....+..||..|+.|-+.+|.++.+++++.
T Consensus 30 ~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~ 59 (107)
T PF06156_consen 30 QLQELLEENARLRIENEHLRERLEELEQEE 59 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456789999999999999999999999843
No 23
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=25.19 E-value=1.6e+02 Score=26.69 Aligned_cols=60 Identities=27% Similarity=0.477 Sum_probs=42.7
Q ss_pred cchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHH-HhcC-----c-----ccccccchHHHHHhhHHHhc
Q 009177 5 KSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAK-FCYG-----V-----NFEITVHNVAALRCAAEFLQ 66 (541)
Q Consensus 5 rSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~ak-FCYG-----~-----~ieit~~NVa~LrCAAeyLe 66 (541)
-||-||.+++... +....+|.+.|||. ...|.|.. |-|. . .|+|-|.=+--|--||+||+
T Consensus 38 tSgTiraml~gpg~~se~~~n~v~f~di~s--hiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 38 TSGTIRAMLSGPGVFSEAEKNEVYFRDIPS--HILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhHHHHHHcCCccccccccceEEeccchH--HHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 4899999998643 33445799999994 55665543 2343 2 46778888888999999997
No 24
>PRK14127 cell division protein GpsB; Provisional
Probab=24.88 E-value=1.1e+02 Score=27.99 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=27.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009177 447 ADVLLIKENEALRSELTRMKLYISDVQKGNN 477 (541)
Q Consensus 447 ~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c~ 477 (541)
.+..+.+||..|+.++.+++.++.+++....
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677889999999999999999999998763
No 25
>PHA03098 kelch-like protein; Provisional
Probab=24.68 E-value=4.1e+02 Score=29.36 Aligned_cols=150 Identities=14% Similarity=0.142 Sum_probs=80.0
Q ss_pred HHHHHHHhhCCCCCCCcchHHHHHHHHHHHhccCCH---HHHHHHHHHHHhhhcccCcccccccccCCCCCcccchHHHH
Q 009177 213 ELLESIVSLMPSEKAAFPINFLCCLLRSAIFLKAST---SCKNELEKRVSAILEHVSVDDLLVLSFTYDGERLFDLESVR 289 (541)
Q Consensus 213 ~llEtiv~lLP~~k~~vs~~fL~~LLr~A~~l~as~---~cr~~LE~rIg~qLdqAtldDLLIPs~~~~~~tlyDvd~V~ 289 (541)
..++.|+..+-+.+-.++..-+..||.+|..+.... .|..-|. ..|+..+.-+++--+.. |..+.+.
T Consensus 57 ~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~----~~l~~~nc~~~~~~a~~------~~~~~L~ 126 (534)
T PHA03098 57 DSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYII----KIIDDNNCIDIYRFSFF------YGCKKLY 126 (534)
T ss_pred HHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHH----HhCCHhHHHHHHHHHHH------cCcHHHH
Confidence 488999999999887888888999999999998763 4544444 33443333333322222 2222222
Q ss_pred HHHHHHHhhhccccccCCCCCccccCCCchhHHHHHhhhhhhhhhhcCCCCCChhHHHHHHHhcCCCCc--cccchHHHH
Q 009177 290 KIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEIATSGELSISKFNGIANLVPKGSR--KVDDDLYRA 367 (541)
Q Consensus 290 Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEiA~D~nL~~sKF~~LAe~lPd~AR--~~~DgLYRA 367 (541)
.....|+ .....++..++.+.-=.+..|.+.|.+..= ...|.+|.|
T Consensus 127 ~~~~~~i--------------------------------~~nf~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~a 174 (534)
T PHA03098 127 SAAYNYI--------------------------------RNNIELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEI 174 (534)
T ss_pred HHHHHHH--------------------------------HHHHHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHH
Confidence 2222222 222222332222111112334444444332 346789999
Q ss_pred HHHHHHhCCCCCHHHHhhhhccccCCCCCHHHHHHHh
Q 009177 368 IDIYLKAHPNLDEIEREKICSSMDPLKLSYEARVHAS 404 (541)
Q Consensus 368 IDiYLKaHp~Lse~Er~~lCr~mdcqKLS~EAc~HAa 404 (541)
|-.+++.++.--...-.+|-+.+-..-|+++--....
T Consensus 175 v~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~ 211 (534)
T PHA03098 175 IIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLK 211 (534)
T ss_pred HHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHH
Confidence 9999987764333333445555555555666555444
No 26
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=22.20 E-value=65 Score=29.41 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH--Hhhhc
Q 009177 447 ADVLLIKENEALRSELTRMKLYISD--VQKGN 476 (541)
Q Consensus 447 ~~~~~~ren~~Lk~el~~Mr~rv~e--LEk~c 476 (541)
...++..||-.|++|.+++|.|+.+ +|+.-
T Consensus 30 ~l~~lvEEN~~L~lENe~LR~RL~~~~~e~~~ 61 (114)
T COG4467 30 HLGSLVEENTALRLENEKLRERLGEPTLEKTA 61 (114)
T ss_pred HHHHHHHhhHHHHhhHHHHHHHhCCccccchh
Confidence 3467899999999999999999999 88765
No 27
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.17 E-value=77 Score=35.35 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 452 IKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 452 ~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
..+++.|+.+|..+|.||.|||++.
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~l 48 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKL 48 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999986
No 28
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=21.98 E-value=75 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHhCCCCCHHHHhh
Q 009177 361 DDDLYRAIDIYLKAHPNLDEIEREK 385 (541)
Q Consensus 361 ~DgLYRAIDiYLKaHp~Lse~Er~~ 385 (541)
.|+.|.+ .+.+|.+||++|-..
T Consensus 10 pD~fY~~---Li~aH~gLs~e~S~~ 31 (60)
T PF10932_consen 10 PDDFYEA---LIEAHRGLSDEQSAA 31 (60)
T ss_pred hhHHHHH---HHHHHhCCCHHHHHH
Confidence 3999998 489999999998654
No 29
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=21.70 E-value=64 Score=38.58 Aligned_cols=50 Identities=26% Similarity=0.427 Sum_probs=34.0
Q ss_pred hhhhhhhcCCCCCChhHHHHHHHhcCCCC--c-----cccchHHH-HHHHHHHhCCCC
Q 009177 329 GTYLGEIATSGELSISKFNGIANLVPKGS--R-----KVDDDLYR-AIDIYLKAHPNL 378 (541)
Q Consensus 329 D~YLaEiA~D~nL~~sKF~~LAe~lPd~A--R-----~~~DgLYR-AIDiYLKaHp~L 378 (541)
|.|=.+..+|..+.+..|..+++.+|.++ . ..+=|++. |++...+.+|..
T Consensus 278 ~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~ 335 (802)
T PF13764_consen 278 DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSL 335 (802)
T ss_pred hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCccc
Confidence 33434555667788999999999999877 2 23446666 888444455765
No 30
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=21.50 E-value=63 Score=27.81 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHhCCC
Q 009177 362 DDLYRAIDIYLKAHPN 377 (541)
Q Consensus 362 DgLYRAIDiYLKaHp~ 377 (541)
-.||-||+-||..|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999964
No 31
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=21.41 E-value=1.2e+02 Score=28.73 Aligned_cols=30 Identities=27% Similarity=0.241 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 447 ADVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 447 ~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
+..+++.|++.|-.+++.|+.||.+||.-+
T Consensus 74 EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 74 ELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999999999999999876
No 32
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=21.35 E-value=1.2e+02 Score=29.59 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 449 VLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 449 ~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
.--+||++++...|.++-.|+..+|...
T Consensus 121 l~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3458999999999999999999988654
No 33
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.17 E-value=1.4e+02 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 009177 449 VLLIKENEALRSELTRMKLYISDVQ 473 (541)
Q Consensus 449 ~~~~ren~~Lk~el~~Mr~rv~eLE 473 (541)
.++++||++++.++++|...|.+|=
T Consensus 17 ~tvk~en~~i~~~ve~i~envk~ll 41 (55)
T PF05377_consen 17 NTVKKENEEISESVEKIEENVKDLL 41 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888876653
Done!