Query 009177
Match_columns 541
No_of_seqs 205 out of 388
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i3n_A Kelch-like protein 11; 98.7 2.3E-08 7.8E-13 99.1 6.8 201 2-257 54-264 (279)
2 3hve_A Gigaxonin; ubiquitin, c 98.6 1.6E-08 5.6E-13 98.8 3.7 199 2-256 50-256 (256)
3 2vkp_A BTB/POZ domain-containi 98.4 2.4E-07 8E-12 78.8 5.9 77 2-87 31-108 (109)
4 1buo_A POZ domain, protein (pr 98.4 3.5E-07 1.2E-11 79.8 5.7 74 2-87 47-120 (121)
5 3b84_A Zinc finger and BTB dom 98.3 2.5E-07 8.4E-12 80.7 3.9 75 2-87 43-117 (119)
6 2vpk_A Myoneurin; transcriptio 98.3 6.2E-07 2.1E-11 77.4 5.9 74 2-86 41-116 (116)
7 3htm_A Speckle-type POZ protei 98.3 1.2E-06 4.1E-11 79.8 8.1 109 2-124 53-162 (172)
8 3ga1_A Nucleus accumbens-assoc 98.3 3.4E-07 1.2E-11 80.8 3.9 75 2-87 52-127 (129)
9 2if5_A Zinc finger and BTB dom 98.3 7.9E-07 2.7E-11 77.0 6.0 76 2-85 44-120 (120)
10 1r29_A B-cell lymphoma 6 prote 98.3 8.9E-07 3E-11 77.6 6.3 77 2-86 48-125 (127)
11 2ppi_A Gigaxonin; BTB domain, 98.2 9.3E-07 3.2E-11 79.9 5.7 75 2-84 66-143 (144)
12 2q81_A MIZ-1 protein; BTB/POZ 98.2 9.4E-07 3.2E-11 77.0 5.0 72 2-85 46-117 (119)
13 2yy9_A Zinc finger and BTB dom 98.2 3.9E-07 1.3E-11 81.4 2.0 76 2-88 44-119 (135)
14 4eoz_A Speckle-type POZ protei 98.2 6.5E-07 2.2E-11 79.3 3.3 95 2-113 44-139 (145)
15 2z8h_A Transcription regulator 98.2 2E-06 6.9E-11 76.8 6.4 78 2-88 55-133 (138)
16 3ohu_A Transcription regulator 98.1 7.6E-07 2.6E-11 77.8 2.5 65 2-69 51-116 (125)
17 2ihc_A Transcription regulator 97.9 3.2E-06 1.1E-10 74.1 2.7 74 2-84 48-122 (124)
18 3m5b_A Zinc finger and BTB dom 97.9 6.3E-06 2.2E-10 72.4 3.6 69 2-86 49-117 (119)
19 3fkc_A Transcriptional regulat 97.8 1.1E-05 3.7E-10 70.2 4.0 62 2-69 50-112 (116)
20 3hqi_A Speckle-type POZ protei 97.8 2.1E-05 7.2E-10 78.7 6.2 107 2-125 193-303 (312)
21 2ast_A S-phase kinase-associat 96.4 0.0022 7.7E-08 59.0 4.1 79 3-89 20-127 (159)
22 4ajy_C Transcription elongatio 96.3 0.0063 2.1E-07 51.5 6.1 62 3-66 21-96 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 94.4 0.076 2.6E-06 47.9 6.8 75 3-88 21-121 (141)
24 2p1m_A SKP1-like protein 1A; F 93.2 0.023 7.8E-07 52.4 1.0 76 3-88 23-125 (160)
25 3v7d_A Suppressor of kinetocho 88.2 0.88 3E-05 42.3 6.7 78 3-88 26-133 (169)
26 2fnj_C Transcription elongatio 84.7 0.72 2.5E-05 38.9 3.7 63 3-67 20-96 (96)
27 1hv2_A Elongin C, ELC1; protei 82.3 1 3.4E-05 38.3 3.6 63 3-67 23-99 (99)
28 1vcb_B Protein (elongin C); tu 64.5 3.5 0.00012 35.8 2.6 63 3-67 36-112 (112)
29 1vjh_A BET V I allergen family 50.3 12 0.00039 32.6 3.5 33 334-377 90-122 (122)
30 2yy0_A C-MYC-binding protein; 43.8 26 0.00088 26.7 4.1 29 448-476 21-49 (53)
31 2yy0_A C-MYC-binding protein; 40.7 20 0.00068 27.3 3.0 26 452-477 18-43 (53)
32 1pd7_B MAD1; PAH2, SIN3, eukar 35.6 12 0.00041 24.7 0.9 17 53-69 3-19 (26)
33 1deb_A APC protein, adenomatou 25.6 35 0.0012 26.0 2.0 28 449-476 13-40 (54)
34 1a92_A Delta antigen; leucine 24.6 87 0.003 23.6 4.0 31 446-476 7-37 (50)
35 3fs7_A Parvalbumin, thymic; ca 23.8 2.2E+02 0.0075 22.3 6.9 60 337-400 21-83 (109)
36 3b0b_C CENP-X, centromere prot 23.6 49 0.0017 27.3 2.8 43 280-335 6-48 (81)
37 1go4_E MAD1 (mitotic arrest de 20.1 99 0.0034 26.6 4.1 31 446-476 12-42 (100)
No 1
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.66 E-value=2.3e-08 Score=99.09 Aligned_cols=201 Identities=13% Similarity=0.234 Sum_probs=135.2
Q ss_pred CcccchHHHHHHhhc-ccCCcceeeccCC----CCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCch
Q 009177 2 LVAKSNYIRKLIIES-KEADLTRINLSNI----PGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNL 76 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~~~~~i~L~d~----PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NL 76 (541)
|.++|.|++.++... .++...+|.|+++ .-.+++|+.+.+|+|+.++++++.||..|..||.+|+|++ |
T Consensus 54 Laa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~------L 127 (279)
T 3i3n_A 54 LAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIR------L 127 (279)
T ss_dssp HHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHH------H
T ss_pred HHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHH------H
Confidence 567899999998753 3444567889876 4578999999999999999999999999999999999986 8
Q ss_pred hHHHHHHhhhhhccChhHHHHHHHhhhhcccchhhhh---hHHHHHHHHHHHHccccCCCCCCCCCccccccccCChhHH
Q 009177 77 AGRTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL---IVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFF 153 (541)
Q Consensus 77 i~ktE~fL~~vvl~sW~dsi~vLksce~llp~AE~l~---Iv~RCidsla~kac~~~~~~~~~~~dWW~eDl~~L~~~~f 153 (541)
....+.||.+.+-. . +|-.++.+|+..+ +.++|.+-|+.....= +-.++...|+.+..
T Consensus 128 ~~~c~~~L~~~l~~--~-------n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v----------~~~~~f~~L~~~~l 188 (279)
T 3i3n_A 128 KEFCGEFLKKKLHL--S-------NCVAIHSLAHMYTLSQLALKAADMIRRNFHKV----------IQDEEFYTLPFHLI 188 (279)
T ss_dssp HHHHHHHHHHHCCT--T-------THHHHHHHHHHTTCHHHHHHHHHHHHHTHHHH----------TTSSGGGGSCHHHH
T ss_pred HHHHHHHHHHcCCc--c-------hHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH----------hcCcChhcCCHHHH
Confidence 99999999885422 2 3444455565544 6778888776543110 12356678888877
Q ss_pred HHHHHHHHHcCC-ChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHHHHhhCCCCC-CCcch
Q 009177 154 SRIIAAMKKRGA-KALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIVSLMPSEK-AAFPI 231 (541)
Q Consensus 154 ~rvi~am~~~g~-~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv~lLP~~k-~~vs~ 231 (541)
..++..=. -.+ +.+.|-.+++.|++.-.+ +.+..+..+ |..=| ..+|.
T Consensus 189 ~~lL~~d~-L~v~sE~~vf~av~~W~~~~~~--------------------------~r~~~~~~l---l~~VRf~l~~~ 238 (279)
T 3i3n_A 189 RDWLSDLE-ITVDSEEVLFETVLKWVQRNAE--------------------------ERERYFEEL---FKLLRLSQMKP 238 (279)
T ss_dssp HHHHTCSS-CCCSCHHHHHHHHHHHHHTTHH--------------------------HHTTTHHHH---HTTSCGGGSCH
T ss_pred HHHhcCcC-CCCCCHHHHHHHHHHHHHcCHH--------------------------HHHHHHHHH---HHhcCCCCCCH
Confidence 77654311 123 355666666655432111 111222333 33322 56889
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 009177 232 NFLCCLLRSAIFLKASTSCKNELEKR 257 (541)
Q Consensus 232 ~fL~~LLr~A~~l~as~~cr~~LE~r 257 (541)
.+|..+++..-.+..++.|+.-|..-
T Consensus 239 ~~L~~~v~~~~l~~~~~~c~~~l~ea 264 (279)
T 3i3n_A 239 TYLTRHVKPERLVANNEVCVKLVADA 264 (279)
T ss_dssp HHHHHTTTTSHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhccchhcCCHHHHHHHHHH
Confidence 99999998888888999998877653
No 2
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.60 E-value=1.6e-08 Score=98.78 Aligned_cols=199 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred CcccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhH
Q 009177 2 LVAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAG 78 (541)
Q Consensus 2 L~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ 78 (541)
|.++|.|++.++.... ++...+|.|+|++ +++|+.+-+|+|+.++++++.||..+..||.+|+|.+ |..
T Consensus 50 Laa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~--~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~------l~~ 121 (256)
T 3hve_A 50 LAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKT 121 (256)
T ss_dssp HHTTCHHHHHTC-----------CEEECSSCC--HHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHH------HHH
T ss_pred HHHcCHHHHHHhCCCCCcccCCCCeEEeCCCC--HHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHH------HHH
Confidence 5689999999997532 3445688898875 8999999999999999999999999999999999997 899
Q ss_pred HHHHHhhhhhccChhHHHHHHHhhhhcccchhhhh---hHHHHHHHHHHHHccccCCCCCCCCCccccccccCChhHHHH
Q 009177 79 RTEDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL---IVQRCIDVATAKACYEANFPCRTPPNWWTEELSIIDIEFFSR 155 (541)
Q Consensus 79 ktE~fL~~vvl~sW~dsi~vLksce~llp~AE~l~---Iv~RCidsla~kac~~~~~~~~~~~dWW~eDl~~L~~~~f~r 155 (541)
..+.||.+.+-. ..++. ++.+|+..+ +...|.+-|+.....= +-.++...|+.+....
T Consensus 122 ~c~~~L~~~l~~--~n~~~-------i~~~A~~~~~~~L~~~~~~~i~~~f~~v----------~~~~~f~~L~~~~l~~ 182 (256)
T 3hve_A 122 LCCEFLEGCIAA--ENCIG-------IRDFALHYCLHHVHYLATEYLETHFRDV----------SSTEEFLELSPQKLKE 182 (256)
T ss_dssp HHHHHHHHTCCS--STTHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHH----------TTCHHHHSSCHHHHHH
T ss_pred HHHHHHHhhCCH--hhHHH-------HHHHHHHcCcHHHHHHHHHHHHHHHHHH----------hCCcchhcCCHHHHHH
Confidence 999999886522 23444 444455433 6777877776543210 1135667888888888
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHhcccccccCCCCCCCCCCCccCCchhhHHHHHHHHHHHH-hhCCCCCCCcchHHH
Q 009177 156 IIAAMKKRGAKALTIASALITYTERSLRDLVRDHSAGNGTKSSDAQSTNSQVRYQQRELLESIV-SLMPSEKAAFPINFL 234 (541)
Q Consensus 156 vi~am~~~g~~~~~i~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~llEtiv-~lLP~~k~~vs~~fL 234 (541)
++..=.-.-.+.+.|-.++ .+|+..- .. .+. ..-..|++.|= .+ +|..||
T Consensus 183 lL~~d~L~v~~E~~v~~av----~~W~~~~------~~-~R~-----------~~~~~ll~~VRf~~-------l~~~~l 233 (256)
T 3hve_A 183 VISLEKLNVGNERYVFEAV----IRWIAHD------TE-IRK-----------VHMKDVMSALWVSG-------LDSSYL 233 (256)
T ss_dssp HHHCC-------CTTHHHH----TTTCCC--------C-CST-----------TTHHHHHHHHHHHT-------TCC-CH
T ss_pred HHccCCCCCCCHHHHHHHH----HHHHHcC------HH-HHH-----------HHHHHHHHhCCCCC-------CCHHHH
Confidence 7653211111233444444 4666310 00 000 01135666552 33 445588
Q ss_pred HHHHHHHHhccCC-HHHHHHHHH
Q 009177 235 CCLLRSAIFLKAS-TSCKNELEK 256 (541)
Q Consensus 235 ~~LLr~A~~l~as-~~cr~~LE~ 256 (541)
...+...-.+..+ +.|+.-||+
T Consensus 234 ~~~v~~~~l~~~~~~~c~~ll~~ 256 (256)
T 3hve_A 234 REQMLNEPLVREIVKECSNIPLS 256 (256)
T ss_dssp HHHHHTSTTHHHHHCC-------
T ss_pred HHHHhcChHHHhhHHHHHHHhhC
Confidence 8887777677776 578887764
No 3
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.43 E-value=2.4e-07 Score=78.79 Aligned_cols=77 Identities=21% Similarity=0.300 Sum_probs=65.2
Q ss_pred CcccchHHHHHHhhcc-cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESK-EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~-~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|+++++...- ++. ..|.|+|++ +++|+...+|+|+.++.+++.||..|..+|++++|++ |...+
T Consensus 31 La~~S~~F~~~f~~~~~e~~-~~i~l~~~~--~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------L~~~c 101 (109)
T 2vkp_A 31 LAVGSSVFYAMFYGDLAEVK-SEIHIPDVE--PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPA------LAKAC 101 (109)
T ss_dssp HHHHCHHHHHHHC------C-CEEEETTSC--HHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHcCHHHHHHhcCCcccCC-CeEEeCCCC--HHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 5679999999998643 333 678888764 8999999999999999999999999999999999997 89999
Q ss_pred HHHhhhh
Q 009177 81 EDFLSQV 87 (541)
Q Consensus 81 E~fL~~v 87 (541)
+.||.+.
T Consensus 102 ~~~l~~~ 108 (109)
T 2vkp_A 102 VNFLETS 108 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9999764
No 4
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.37 E-value=3.5e-07 Score=79.83 Aligned_cols=74 Identities=19% Similarity=0.353 Sum_probs=66.5
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++.++... ..+|.|+|++ +++|+.+.+|+|+.++++++.|+..|..||++++|.+ |....+
T Consensus 47 Laa~S~yF~~~f~~~----~~~i~l~~~~--~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c~ 114 (121)
T 1buo_A 47 LACTSKMFEILFHRN----SQHYTLDFLS--PKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY------LEEQCL 114 (121)
T ss_dssp HHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHH------HHHHHH
T ss_pred HhhcCHHHHHHHcCC----CcEEEeCCCC--HHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHH------HHHHHH
Confidence 568999999999752 3478888886 8999999999999999999999999999999999987 899999
Q ss_pred HHhhhh
Q 009177 82 DFLSQV 87 (541)
Q Consensus 82 ~fL~~v 87 (541)
.||.+.
T Consensus 115 ~~l~~~ 120 (121)
T 1buo_A 115 KMLETI 120 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 5
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.33 E-value=2.5e-07 Score=80.69 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=64.7
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++.++.... ...|.|+|++ +++|+.+.+|+|+.++++++.||..|..||++++|.+ |....+
T Consensus 43 Laa~S~yF~~~f~~~~---~~~i~l~~~~--~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~------L~~~C~ 111 (119)
T 3b84_A 43 LACCSHFFQSLYGDGS---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPE------AVELCQ 111 (119)
T ss_dssp HHHHCHHHHHHHTTTT---CCCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHH
T ss_pred HhhcCHHHHHHHCCCC---CCeEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 5679999999998643 3568888877 8999999999999999999999999999999999987 899999
Q ss_pred HHhhhh
Q 009177 82 DFLSQV 87 (541)
Q Consensus 82 ~fL~~v 87 (541)
.||.+.
T Consensus 112 ~~l~~~ 117 (119)
T 3b84_A 112 SFKPKT 117 (119)
T ss_dssp HCC---
T ss_pred HHHHHc
Confidence 998763
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.31 E-value=6.2e-07 Score=77.40 Aligned_cols=74 Identities=18% Similarity=0.335 Sum_probs=63.1
Q ss_pred CcccchHHHHHHhhcccCCcceeecc--CCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLS--NIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGR 79 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~--d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~k 79 (541)
|.++|.|++.++...+ ...|.|+ |+ .+++|+.+.+|+|+.++++++.||..|..||++++|.+ |...
T Consensus 41 Laa~S~yF~~~f~~~~---~~~i~l~~~~~--~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~------L~~~ 109 (116)
T 2vpk_A 41 LASFSEYFGAIYRSTS---ENNVFLDQSQV--KADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEE------VVTK 109 (116)
T ss_dssp HHHHCHHHHHHHTTCC---CSCEECCTTTC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHH
T ss_pred HhhcCHHHHHHHcCCC---CCeEEeecCCC--CHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHH------HHHH
Confidence 5689999999998752 3346555 55 58999999999999999999999999999999999986 8999
Q ss_pred HHHHhhh
Q 009177 80 TEDFLSQ 86 (541)
Q Consensus 80 tE~fL~~ 86 (541)
.+.||.+
T Consensus 110 C~~~l~~ 116 (116)
T 2vpk_A 110 CKIKMED 116 (116)
T ss_dssp HHHHHC-
T ss_pred HHHHHhC
Confidence 9999853
No 7
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.31 E-value=1.2e-06 Score=79.83 Aligned_cols=109 Identities=19% Similarity=0.222 Sum_probs=83.6
Q ss_pred CcccchHHHHHHhhc-ccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|+++++... .++....|.|+|++ +++|+.+.+|+|+..+++++.|+..|..+|++++|.+ |...+
T Consensus 53 L~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c 124 (172)
T 3htm_A 53 LAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMC 124 (172)
T ss_dssp HHHHCHHHHHHHHSCCCGGGTTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHcCHHHHHHHccCccccCCCeEEecCCC--HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHH------HHHHH
Confidence 568899999999864 34445688898875 8999999999999999999999999999999999987 89999
Q ss_pred HHHhhhhhccChhHHHHHHHhhhhcccchhhhhhHHHHHHHHHH
Q 009177 81 EDFLSQVALSSLSGAVVVLKSCEALLPLAEDLLIVQRCIDVATA 124 (541)
Q Consensus 81 E~fL~~vvl~sW~dsi~vLksce~llp~AE~l~Iv~RCidsla~ 124 (541)
+.||.+.+ +-..++.+++-.+..- --.+...|++-|+.
T Consensus 125 ~~~l~~~l--~~~n~~~~~~~A~~~~----~~~L~~~~~~~i~~ 162 (172)
T 3htm_A 125 EDALCSNL--SVENAAEILILADLHS----ADQLKTQAVDFINY 162 (172)
T ss_dssp HHHHHHTC--CTTTHHHHHHHHHHTT----CHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CHHHHHHHHHHHHHhC----cHHHHHHHHHHHHH
Confidence 99998744 3334444444333221 12367777777764
No 8
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.29 E-value=3.4e-07 Score=80.78 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=59.5
Q ss_pred CcccchHHHHHHhhcccCCcceeecc-CCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLS-NIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~-d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++... ....|.|+ +++ +++|+.+.+|+|+.++++++.||..|..||++|+|.+ |....
T Consensus 52 Laa~S~~F~~~f~~~---~~~~i~l~~~~~--~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~------l~~~C 120 (129)
T 3ga1_A 52 LAASSSYFRDLFNNS---RSAVVELPAAVQ--PQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQE------IMEKG 120 (129)
T ss_dssp HHHHBHHHHHHHHHC---CCSEEECCTTCC--HHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTT------SSCC-
T ss_pred HHHcCHHHHHHHcCC---CCCEEEECCCCC--HHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence 567999999999876 34578885 665 8999999999999999999999999999999999987 78888
Q ss_pred HHHhhhh
Q 009177 81 EDFLSQV 87 (541)
Q Consensus 81 E~fL~~v 87 (541)
+.||.++
T Consensus 121 ~~~L~~~ 127 (129)
T 3ga1_A 121 TEFFLKV 127 (129)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 8888764
No 9
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.29 E-value=7.9e-07 Score=77.05 Aligned_cols=76 Identities=21% Similarity=0.364 Sum_probs=64.3
Q ss_pred CcccchHHHHHHhhcc-cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESK-EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~-~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++...- ++....|.|++++ +++|+..-+|+|+.++.+++.|+..|..||.+++|.+ |....
T Consensus 44 Laa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~------L~~~C 115 (120)
T 2if5_A 44 LAACSQYFKKLFTSGAVVDQQNVYEIDFVS--AEALTALMDFAYTATLTVSTANVGDILSAARLLEIPA------VSHVC 115 (120)
T ss_dssp HHHHCHHHHHHHHC-----CCSEEECCSSC--HHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHhCHHHHHHhcCCccccCCceEEeCCCC--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence 5679999999998542 3345578888765 8999999999999999999999999999999999997 89999
Q ss_pred HHHhh
Q 009177 81 EDFLS 85 (541)
Q Consensus 81 E~fL~ 85 (541)
+.||+
T Consensus 116 ~~~L~ 120 (120)
T 2if5_A 116 ADLLD 120 (120)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99874
No 10
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.28 E-value=8.9e-07 Score=77.61 Aligned_cols=77 Identities=26% Similarity=0.431 Sum_probs=67.0
Q ss_pred CcccchHHHHHHhhcccCCcceeec-cCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINL-SNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L-~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|+++++..........|.| +++ .+++|+.+.+|+|+.++.+++.|+..|..||++++|.+ |....
T Consensus 48 Laa~S~~F~~~f~~~~~e~~~~i~l~~~~--~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~------L~~~c 119 (127)
T 1r29_A 48 LMACSGLFYSIFTDQLKRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEH------VVDTC 119 (127)
T ss_dssp HHHHCHHHHHHHTSTTTTTCSEEECCTTS--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHhCHHHHHHhcCCccCCCCEEEeCCCC--CHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence 5689999999998644335567888 666 48999999999999999999999999999999999987 89999
Q ss_pred HHHhhh
Q 009177 81 EDFLSQ 86 (541)
Q Consensus 81 E~fL~~ 86 (541)
+.||.+
T Consensus 120 ~~~l~~ 125 (127)
T 1r29_A 120 RKFIKA 125 (127)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999865
No 11
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.24 E-value=9.3e-07 Score=79.95 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=64.7
Q ss_pred CcccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhH
Q 009177 2 LVAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAG 78 (541)
Q Consensus 2 L~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ 78 (541)
|.++|.|++.++.... ++....|.|+|++ +++|+.+.+|+|..++++++.||..|..||++|+|.+ |..
T Consensus 66 Laa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~ 137 (144)
T 2ppi_A 66 LAAASPYIRTKLNYNPPKDDGSTYKIELEGIS--VMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTD------LKT 137 (144)
T ss_dssp HHHHCHHHHHHHHHCC-----CCCEEECCSSC--HHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHH------HHH
T ss_pred HHHcCHHHHHHHcCCCccccCCCcEEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHH
Confidence 5679999999998642 2345678888876 9999999999999999999999999999999999987 788
Q ss_pred HHHHHh
Q 009177 79 RTEDFL 84 (541)
Q Consensus 79 ktE~fL 84 (541)
.++.||
T Consensus 138 ~C~~~L 143 (144)
T 2ppi_A 138 LCCEFL 143 (144)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 888876
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.22 E-value=9.4e-07 Score=76.97 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=62.6
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++.++... ...|.|+++ .+++|+.+-+|+|+.++++++.||..|..||++|+|.+ |....+
T Consensus 46 Laa~S~yF~~~f~~~----~~~i~l~~~--~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~------L~~~C~ 113 (119)
T 2q81_A 46 LAACSEYFKMLFVDQ----KDVVHLDIS--NAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQD------IITACH 113 (119)
T ss_dssp HHHHCHHHHHHHHHC----CSGGGGGGC--CHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHH
T ss_pred HHHcCHHHHHHHcCC----CCEEEeCCC--CHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 568999999999863 235666655 48999999999999999999999999999999999997 899999
Q ss_pred HHhh
Q 009177 82 DFLS 85 (541)
Q Consensus 82 ~fL~ 85 (541)
.||.
T Consensus 114 ~~l~ 117 (119)
T 2q81_A 114 ALKS 117 (119)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9885
No 13
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.19 E-value=3.9e-07 Score=81.36 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=63.3
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++.++.... ...|.|+|++ +++|+.+.+|+|+.+++++..||..|..||++|+|.+ |....+
T Consensus 44 Laa~S~yF~~mf~~~~---~~~i~l~~~~--~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~------L~~~C~ 112 (135)
T 2yy9_A 44 LACCSHFFQRIYGDGT---GGSVVLPAGF--AEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPE------AVELCQ 112 (135)
T ss_dssp HHHHCHHHHHTCC-------CCEEECGGG--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHH------HHHHHH
T ss_pred HHHhCHHHHHHHcCCC---CCeEEeCCCC--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 5678999999987643 3468888887 8999999999999999999999999999999999987 899999
Q ss_pred HHhhhhh
Q 009177 82 DFLSQVA 88 (541)
Q Consensus 82 ~fL~~vv 88 (541)
.||.+..
T Consensus 113 ~~l~~~l 119 (135)
T 2yy9_A 113 SFQPQTS 119 (135)
T ss_dssp HCCC---
T ss_pred HHHHHhc
Confidence 9987754
No 14
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.19 E-value=6.5e-07 Score=79.35 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=64.7
Q ss_pred CcccchHHHHHHhhc-ccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++... .++....|.|+|++ +++|+.+.+|+|+.++++++.|+..+..+|++++|.+ |...+
T Consensus 44 L~~~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c 115 (145)
T 4eoz_A 44 LAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMC 115 (145)
T ss_dssp HHHHCHHHHHHHHSSSHHHHHTEEEECSSC--HHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHcCHHHHHHHcCCCcCCCCceEEecCCC--HHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHH------HHHHH
Confidence 568999999999853 23334578888874 8999999999999999999999999999999999987 89999
Q ss_pred HHHhhhhhccChhHHHHHHHhhhhcccchhhhh
Q 009177 81 EDFLSQVALSSLSGAVVVLKSCEALLPLAEDLL 113 (541)
Q Consensus 81 E~fL~~vvl~sW~dsi~vLksce~llp~AE~l~ 113 (541)
+.||.+.+- ..+|-.++-+|+..+
T Consensus 116 ~~~l~~~l~---------~~n~~~~l~~A~~~~ 139 (145)
T 4eoz_A 116 EDALCSNLS---------VENAAEILILADLHS 139 (145)
T ss_dssp HCC------------------------------
T ss_pred HHHHHHhCC---------HHHHHHHHHHHHHhC
Confidence 999986431 235555666666544
No 15
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.18 E-value=2e-06 Score=76.76 Aligned_cols=78 Identities=23% Similarity=0.353 Sum_probs=66.8
Q ss_pred CcccchHHHHHHhhcccCCcceeecc-CCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLS-NIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~-d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++...... ...|.|+ +++ +++|+.+.+|+|+.++++++.||..|..||++|+|.+ |....
T Consensus 55 Laa~S~yF~~~f~~~~~e-~~~i~l~~~v~--~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~------L~~~C 125 (138)
T 2z8h_A 55 LAACSSYFHSRIVGQTDA-ELTVTLPEEVT--VKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN------IEESC 125 (138)
T ss_dssp HHHHCHHHHHHHTTCCCT-TEEEECCTTSC--HHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGG------GHHHH
T ss_pred HHHcCHHHHHHHhcCCCC-CceEEeCCCCC--HHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHH------HHHHH
Confidence 568999999999865432 2467774 554 8999999999999999999999999999999999997 89999
Q ss_pred HHHhhhhh
Q 009177 81 EDFLSQVA 88 (541)
Q Consensus 81 E~fL~~vv 88 (541)
+.||.+.+
T Consensus 126 ~~~l~~~l 133 (138)
T 2z8h_A 126 FQFLKFKF 133 (138)
T ss_dssp HHHTTCCC
T ss_pred HHHHHHhc
Confidence 99998754
No 16
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.13 E-value=7.6e-07 Score=77.82 Aligned_cols=65 Identities=22% Similarity=0.371 Sum_probs=56.4
Q ss_pred CcccchHHHHHHhhcccCCcceeeccC-CCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcc
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSN-IPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTD 69 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d-~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE 69 (541)
|.++|.|++.++...... ...|.|+| + .+++|+.+.+|+|+.++++++.||..|..||++|+|.+
T Consensus 51 Laa~S~yF~~~f~~~~~e-~~~i~l~~~~--~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~ 116 (125)
T 3ohu_A 51 LAACSEYFWQALVGQTKN-DLVVSLPEEV--TARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHN 116 (125)
T ss_dssp HHHHBHHHHHHHTTCCCS-SCEEECCTTC--CHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSS
T ss_pred HHHcCHHHHHHhcCCCCC-CcEEEeCCCC--CHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHH
Confidence 567999999999875433 45677766 5 48999999999999999999999999999999999987
No 17
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=97.94 E-value=3.2e-06 Score=74.13 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=59.7
Q ss_pred CcccchHHHHHHhhcccCCcceeecc-CCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLS-NIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~-d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++.....+ ...|.|+ ++ .+++|+.+.+|+|+.++++++.||..|..||++++|.+ |....
T Consensus 48 Laa~S~yF~~mf~~~~~e-~~~i~l~~~v--~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~------L~~~C 118 (124)
T 2ihc_A 48 LAACSSYFHSRIVGQADG-ELNITLPEEV--TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN------IEESC 118 (124)
T ss_dssp HHHHBHHHHHHHTTC----CEEEECCTTS--CHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSS------CCGGG
T ss_pred HHHcCHHHHHHHcCCCCC-CceEeecCCc--CHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHH------HHHHH
Confidence 568999999999864322 2467774 55 48999999999999999999999999999999999987 56665
Q ss_pred HHHh
Q 009177 81 EDFL 84 (541)
Q Consensus 81 E~fL 84 (541)
+.||
T Consensus 119 ~~~l 122 (124)
T 2ihc_A 119 FQFL 122 (124)
T ss_dssp GGTC
T ss_pred HHHH
Confidence 5555
No 18
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=97.88 E-value=6.3e-06 Score=72.41 Aligned_cols=69 Identities=20% Similarity=0.215 Sum_probs=57.0
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHHH
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRTE 81 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~ktE 81 (541)
|.++|.|++. ....|.|+|++ +++|+...+|+|+.+++|+..||..|..||++|+|.+ |....+
T Consensus 49 Laa~S~yF~~--------~~~~i~l~~v~--~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~------l~~~C~ 112 (119)
T 3m5b_A 49 LAGVSQQLGR--------RGQWALGEGIS--PSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS------LEEACW 112 (119)
T ss_dssp HHTTCGGGCC--------CEEEECCSSCC--HHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHH------HHHHHH
T ss_pred HHHcCHHHhc--------CCCEEEeCCCC--HHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHH------HHHHHH
Confidence 4566777652 23468888876 8999999999999999999999999999999999987 788888
Q ss_pred HHhhh
Q 009177 82 DFLSQ 86 (541)
Q Consensus 82 ~fL~~ 86 (541)
.++.+
T Consensus 113 ~~~~~ 117 (119)
T 3m5b_A 113 RARGD 117 (119)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 87754
No 19
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=97.82 E-value=1.1e-05 Score=70.20 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=55.4
Q ss_pred CcccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCccc-ccccchHHHHHhhHHHhcCcc
Q 009177 2 LVAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVNF-EITVHNVAALRCAAEFLQMTD 69 (541)
Q Consensus 2 L~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~i-eit~~NVa~LrCAAeyLeMtE 69 (541)
|.++|.|++.++... ...|.|++++ +++|+...+|+|+.++ ++++.|+..+..||++|+|..
T Consensus 50 Laa~S~~F~~~f~~~----~~~i~l~~~~--~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~ 112 (116)
T 3fkc_A 50 LSASSTYFHQLFSVA----GQVVELSFIR--AEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKF 112 (116)
T ss_dssp HHHHCHHHHHHTTSC----CSEEEECSSC--HHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCHHHHHHHcCC----CCEEEeCCCC--HHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccc
Confidence 568999999999864 3478888876 8999999999999999 799999999999999999975
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=97.79 E-value=2.1e-05 Score=78.75 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=83.9
Q ss_pred CcccchHHHHHHhhc-ccCCcceeeccCCCCCHHHHHHHHHHhcCcccccccchHHHHHhhHHHhcCcccccCCchhHHH
Q 009177 2 LVAKSNYIRKLIIES-KEADLTRINLSNIPGGPEMFEKAAKFCYGVNFEITVHNVAALRCAAEFLQMTDKYCENNLAGRT 80 (541)
Q Consensus 2 L~srSg~l~kli~~~-~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~ieit~~NVa~LrCAAeyLeMtE~~~~~NLi~kt 80 (541)
|.++|.|++.++... .++...+|.|+|++ +++|+...+|+|+..+.++..|+..|-.||++++|.. |...+
T Consensus 193 Laa~S~~F~~~f~~~~~e~~~~~i~l~~~~--~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~------l~~~c 264 (312)
T 3hqi_A 193 LAARSPVFSAMFEHEMEESKKNRVEINDVE--PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALER------LKVMC 264 (312)
T ss_dssp HHHHCHHHHHHTTC-----CCSEEEECSSC--HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHH------HHHHH
T ss_pred HHHcCHHHHHHhccCccccCCceEEecCCC--HHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHH------HHHHH
Confidence 568999999999753 34455689999875 8999999999999999999999999999999999986 89999
Q ss_pred HHHhhhhhccChhHHHHHHHhhhhcccchhhh---hhHHHHHHHHHHH
Q 009177 81 EDFLSQVALSSLSGAVVVLKSCEALLPLAEDL---LIVQRCIDVATAK 125 (541)
Q Consensus 81 E~fL~~vvl~sW~dsi~vLksce~llp~AE~l---~Iv~RCidsla~k 125 (541)
|.||.+.+ +- .+|-.++.+|+.. .+...|++-|+..
T Consensus 265 ~~~l~~~~--~~-------~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 303 (312)
T 3hqi_A 265 EDALCSNL--SV-------ENAAEILILADLHSADQLKTQAVDFINYH 303 (312)
T ss_dssp HHHHHTTC--CT-------TTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHccC--CH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99998643 22 2344445556554 5788888888753
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=96.38 E-value=0.0022 Score=58.99 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=62.7
Q ss_pred cccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhcCcc--------------------------cccccc
Q 009177 3 VAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGVN--------------------------FEITVH 53 (541)
Q Consensus 3 ~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYG~~--------------------------ieit~~ 53 (541)
++.|++|+.|+...+ ++....|.|++++ +.+++++..|||-.+ +.++..
T Consensus 20 A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~--~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~id~~ 97 (159)
T 2ast_A 20 AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQG 97 (159)
T ss_dssp HHTCHHHHHHTTSSCSS------CEECTTSC--HHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCSCHH
T ss_pred HHHhHHHHHHHHhcCCcccccCCCcCCCCcc--HHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcCCHH
Confidence 467999999998632 2333468888876 579999999999544 789999
Q ss_pred hHHHHHhhHHHhcCcccccCCchhHHHHHHhhhhhc
Q 009177 54 NVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVAL 89 (541)
Q Consensus 54 NVa~LrCAAeyLeMtE~~~~~NLi~ktE~fL~~vvl 89 (541)
|+--|-.||.||+|.. |+.-+-.|+...+-
T Consensus 98 ~l~eLl~AAnyL~I~~------Lld~~c~~va~~i~ 127 (159)
T 2ast_A 98 TLFELILAANYLDIKG------LLDVTCKTVANMIK 127 (159)
T ss_dssp HHHHHHHHHHHHTCHH------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhHHH------HHHHHHHHHHHHHc
Confidence 9999999999999986 89999999977653
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=96.28 E-value=0.0063 Score=51.54 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=48.3
Q ss_pred cccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhc-----C---cccc---cccchHHHHHhhHHHhc
Q 009177 3 VAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCY-----G---VNFE---ITVHNVAALRCAAEFLQ 66 (541)
Q Consensus 3 ~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCY-----G---~~ie---it~~NVa~LrCAAeyLe 66 (541)
+..|++|+.++...+ ++....|.|++++ +.+++++..||| . ..+. |++.|+--|-.||.||+
T Consensus 21 A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~--~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 21 ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 96 (97)
T ss_dssp HTTSHHHHHHHCCC--------CEEECTTSC--HHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred HHHhHHHHHHHHhCCCccccCCCceECCCCC--HHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence 457999999998632 2234578788765 789999999999 3 4555 99999999999999997
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=94.36 E-value=0.076 Score=47.89 Aligned_cols=75 Identities=16% Similarity=0.306 Sum_probs=61.9
Q ss_pred cccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcc--------------------------cccccchHH
Q 009177 3 VAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVN--------------------------FEITVHNVA 56 (541)
Q Consensus 3 ~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~--------------------------ieit~~NVa 56 (541)
+..|++|+.++...+ ...|.|++++ +.+++.+..|||--+ +.++..++-
T Consensus 21 A~~S~~ik~ml~~~~---~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~ 95 (141)
T 1fs1_B 21 AKQSVTIKTMLEDLG---MDPVPLPNVN--AAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLF 95 (141)
T ss_dssp GGTCHHHHHHHHHTC---CSSEECTTCC--HHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHH
T ss_pred HHHhHHHHHHHHhcC---CCceecCCcC--HHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHH
Confidence 568999999998753 2368888876 579999999999432 678999999
Q ss_pred HHHhhHHHhcCcccccCCchhHHHHHHhhhhh
Q 009177 57 ALRCAAEFLQMTDKYCENNLAGRTEDFLSQVA 88 (541)
Q Consensus 57 ~LrCAAeyLeMtE~~~~~NLi~ktE~fL~~vv 88 (541)
-|-.||.||++.. |+.-+-.|+...+
T Consensus 96 eLi~AAnyL~I~~------Lldl~c~~vA~~i 121 (141)
T 1fs1_B 96 ELILAANYLDIKG------LLDVTCKTVANMI 121 (141)
T ss_dssp HHHHHHHHHTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhH------HHHHHHHHHHHHH
Confidence 9999999999986 8888888887654
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=93.17 E-value=0.023 Score=52.45 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=42.1
Q ss_pred cccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCcc---------------------------cccccchH
Q 009177 3 VAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGVN---------------------------FEITVHNV 55 (541)
Q Consensus 3 ~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~~---------------------------ieit~~NV 55 (541)
+..|++|+.++..... ...|.|++++| .+++.+..|||--+ +.++..++
T Consensus 23 A~~S~~ik~ml~~~~~--~~~Ipl~~V~~--~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l 98 (160)
T 2p1m_A 23 ALESQTIAHMVEDDCV--DNGVPLPNVTS--KILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATL 98 (160)
T ss_dssp HHTCTTTC--------------CCTTSCH--HHHHHHHHC----------------------------------------
T ss_pred HHHhHHHHHHHHccCC--CCceeCCcCcH--HHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHH
Confidence 3578999999976432 23577777775 89999999999533 47889999
Q ss_pred HHHHhhHHHhcCcccccCCchhHHHHHHhhhhh
Q 009177 56 AALRCAAEFLQMTDKYCENNLAGRTEDFLSQVA 88 (541)
Q Consensus 56 a~LrCAAeyLeMtE~~~~~NLi~ktE~fL~~vv 88 (541)
--|--||.||+|.. |+.-+-.|+...+
T Consensus 99 ~eLi~AAnyL~I~~------Lldl~c~~vA~~i 125 (160)
T 2p1m_A 99 FELILAANYLNIKN------LLDLTCQTVADMI 125 (160)
T ss_dssp --CHHHHHHTTCHH------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 99999999999986 8988888887765
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=88.21 E-value=0.88 Score=42.27 Aligned_cols=78 Identities=10% Similarity=0.220 Sum_probs=55.4
Q ss_pred cccchHHHHHHhhccc-----CCcceeeccCCCCCHHHHHHHHHHhcCcc-------------------------ccccc
Q 009177 3 VAKSNYIRKLIIESKE-----ADLTRINLSNIPGGPEMFEKAAKFCYGVN-------------------------FEITV 52 (541)
Q Consensus 3 ~srSg~l~kli~~~~~-----~~~~~i~L~d~PGGaeaFEl~akFCYG~~-------------------------ieit~ 52 (541)
+..|+.|+.++..... .+...|-|++++ +.+++.+..|||--+ +.+.+
T Consensus 26 A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~--s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~ 103 (169)
T 3v7d_A 26 AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVR--SSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQ 103 (169)
T ss_dssp HTTSHHHHHHHHC-----------CEEECTTCC--HHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCH
T ss_pred HHHhHHHHHHHHhcCcccccccCCCceeeCCCC--HHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCH
Confidence 3579999999986543 222568888876 589999999998321 35677
Q ss_pred chHHHHHhhHHHhcCcccccCCchhHHHHHHhhhhh
Q 009177 53 HNVAALRCAAEFLQMTDKYCENNLAGRTEDFLSQVA 88 (541)
Q Consensus 53 ~NVa~LrCAAeyLeMtE~~~~~NLi~ktE~fL~~vv 88 (541)
..+--|-.||.||+|.. |+.-|=.++...+
T Consensus 104 ~~LfeLi~AAnyLdIk~------Lldl~c~~vA~~i 133 (169)
T 3v7d_A 104 EMLYEIILAANYLNIKP------LLDAGCKVVAEMI 133 (169)
T ss_dssp HHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHH------HHHHHHHHHHHHH
Confidence 78888999999999986 6666666655443
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=84.75 E-value=0.72 Score=38.90 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=46.6
Q ss_pred cccchHHHHHHhhcc---cCCcceeeccCCCCCHHHHHHHHHHhcCc-----------ccccccchHHHHHhhHHHhcC
Q 009177 3 VAKSNYIRKLIIESK---EADLTRINLSNIPGGPEMFEKAAKFCYGV-----------NFEITVHNVAALRCAAEFLQM 67 (541)
Q Consensus 3 ~srSg~l~kli~~~~---~~~~~~i~L~d~PGGaeaFEl~akFCYG~-----------~ieit~~NVa~LrCAAeyLeM 67 (541)
+..|+.|+.++.+.+ ++....|.|++++ +.+++.+..|||=- .+.+.+..+--|--||.||++
T Consensus 20 A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~--~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 20 ALTSGTIKAMLSGPGQFAENETNEVNFREIP--SHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp HTTSHHHHHHHHCC--------CEEECSSCC--HHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHccCCcccccCCceeCCCCC--HHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 457999999998643 2223468788776 47999999999832 146888889999999999974
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=82.26 E-value=1 Score=38.28 Aligned_cols=63 Identities=24% Similarity=0.306 Sum_probs=47.3
Q ss_pred cccchHHHHHHhhcccCCcceeeccCCCCCHHHHHHHHHHhcCc--------------ccccccchHHHHHhhHHHhcC
Q 009177 3 VAKSNYIRKLIIESKEADLTRINLSNIPGGPEMFEKAAKFCYGV--------------NFEITVHNVAALRCAAEFLQM 67 (541)
Q Consensus 3 ~srSg~l~kli~~~~~~~~~~i~L~d~PGGaeaFEl~akFCYG~--------------~ieit~~NVa~LrCAAeyLeM 67 (541)
+..|+.|+.++...-+.+...|-|++++| .+++.+..|||=- .+.+.+..+--|--||.||++
T Consensus 23 A~~S~~ik~ml~~~~e~~~~~Iplp~V~~--~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 23 AMISPTLKAMIEGPFRESKGRIELKQFDS--HILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp HTTCHHHHHHHHSSTTTCTTEEEETTSCH--HHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred HHHhHHHHHHHhcccccCCCceecCCcCH--HHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence 45799999999862222334688888764 6999999999931 146777788888999999974
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=64.48 E-value=3.5 Score=35.83 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=45.8
Q ss_pred cccchHHHHHHhhccc---CCcceeeccCCCCCHHHHHHHHHHhcCc-----------ccccccchHHHHHhhHHHhcC
Q 009177 3 VAKSNYIRKLIIESKE---ADLTRINLSNIPGGPEMFEKAAKFCYGV-----------NFEITVHNVAALRCAAEFLQM 67 (541)
Q Consensus 3 ~srSg~l~kli~~~~~---~~~~~i~L~d~PGGaeaFEl~akFCYG~-----------~ieit~~NVa~LrCAAeyLeM 67 (541)
+..|+.|+.++..... .....|-|++++| .+++++..|||=- .+.+.+..+--|--||.||++
T Consensus 36 A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s--~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 36 ALTSGTIKAMLSGPGQFAENETNEVNFREIPS--HVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112 (112)
T ss_dssp HHTSHHHHHHSSCC--------CEEECSSCCH--HHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHhcCCcccccCCceeCCCCCH--HHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence 3578999999986432 2234687887764 6999999999831 146788888899999999975
No 29
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A
Probab=50.31 E-value=12 Score=32.60 Aligned_cols=33 Identities=6% Similarity=-0.023 Sum_probs=25.5
Q ss_pred hhcCCCCCChhHHHHHHHhcCCCCccccchHHHHHHHHHHhCCC
Q 009177 334 EIATSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPN 377 (541)
Q Consensus 334 EiA~D~nL~~sKF~~LAe~lPd~AR~~~DgLYRAIDiYLKaHp~ 377 (541)
|...|.+.+|.++...+ .++++|||-||-+||.
T Consensus 90 e~~~~~~~~p~~~~~~~-----------~~~~k~ie~yll~~p~ 122 (122)
T 1vjh_A 90 EKVHKDIDDPHSIIDES-----------VKYFKKLDEAILNFKE 122 (122)
T ss_dssp EESSTTSCCSHHHHHHH-----------HHHHHHHHHHHHHC--
T ss_pred EECCCCCCCHHHHHHHH-----------HHHHHHHHHHHhhCCC
Confidence 45667788888886655 6889999999999983
No 30
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.82 E-value=26 Score=26.71 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 448 DVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 448 ~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
...+++||.+||..++.++.++.||.+..
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777776553
No 31
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.74 E-value=20 Score=27.35 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 009177 452 IKENEALRSELTRMKLYISDVQKGNN 477 (541)
Q Consensus 452 ~ren~~Lk~el~~Mr~rv~eLEk~c~ 477 (541)
.-|.+.||.|++.+|.|+.+|.+++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~ 43 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENK 43 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998873
No 32
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=35.61 E-value=12 Score=24.73 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.2
Q ss_pred chHHHHHhhHHHhcCcc
Q 009177 53 HNVAALRCAAEFLQMTD 69 (541)
Q Consensus 53 ~NVa~LrCAAeyLeMtE 69 (541)
.||..|-=||||||=-|
T Consensus 3 ~nvq~LLeAAeyLErrE 19 (26)
T 1pd7_B 3 MNIQMLLEAADYLERRE 19 (26)
T ss_dssp CSTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 48999999999998444
No 33
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.59 E-value=35 Score=26.04 Aligned_cols=28 Identities=25% Similarity=0.249 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 449 VLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 449 ~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
..++.||-.||.|++.=...++.||.|-
T Consensus 13 e~Lk~ENshLrrEL~dNS~~lskLE~et 40 (54)
T 1deb_A 13 EALKMENSNLRQELEDNSNHLTKLETEA 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHhhh
Confidence 4678999999999999999999999997
No 34
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.57 E-value=87 Score=23.65 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=28.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 446 QADVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 446 ~~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
..|+..++..++|..++.+.+..+..||.+.
T Consensus 7 eqWv~~Rkk~eeler~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 7 EQWVSGRKKLEELERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3689999999999999999999999999885
No 35
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=23.81 E-value=2.2e+02 Score=22.33 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=44.3
Q ss_pred CCCCCChhHHHHHHHhcCCCCccccchHHHHHHHHHHhCCC-CCHHHHhhhhcccc--CCCCCHHHH
Q 009177 337 TSGELSISKFNGIANLVPKGSRKVDDDLYRAIDIYLKAHPN-LDEIEREKICSSMD--PLKLSYEAR 400 (541)
Q Consensus 337 ~D~nL~~sKF~~LAe~lPd~AR~~~DgLYRAIDiYLKaHp~-Lse~Er~~lCr~md--cqKLS~EAc 400 (541)
.|..+....|+.+...- ....+.+.+|.+.|=+.+.+ |+.+|=.++++.+. ..+++.+.+
T Consensus 21 ~~g~i~~~eF~~~~~~~----~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~ 83 (109)
T 3fs7_A 21 AADSFNYKSFFSTVGLS----SKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAET 83 (109)
T ss_dssp STTCCCHHHHHHHHTCT----TCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTTSCCCCHHHH
T ss_pred CCCcCcHHHHHHHHhcC----CCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcccccCCHHHH
Confidence 68899999999887642 34566788888887666654 99999988888774 456666543
No 36
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=23.57 E-value=49 Score=27.30 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred CcccchHHHHHHHHHHHhhhccccccCCCCCccccCCCchhHHHHHhhhhhhhhhh
Q 009177 280 ERLFDLESVRKIISGFVEKEKSMAVFSGSGDFRESCSCSPAMHRVAKTVGTYLGEI 335 (541)
Q Consensus 280 ~tlyDvd~V~Ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~l~~VakLvD~YLaEi 335 (541)
+..++.+++.||+..+...+.. .-+..++..||+++|-|..|.
T Consensus 6 ~~~~~~~lI~ril~~~f~~~kt-------------rI~~dAl~l~aeyl~iFV~EA 48 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRT-------------RVNGDALLLMAELLKVFVREA 48 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTC-------------EECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcc-------------cccHHHHHHHHHHHHHHHHHH
Confidence 3568999999999987654321 124578999999999999884
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.06 E-value=99 Score=26.59 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=27.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 009177 446 QADVLLIKENEALRSELTRMKLYISDVQKGN 476 (541)
Q Consensus 446 ~~~~~~~ren~~Lk~el~~Mr~rv~eLEk~c 476 (541)
.++..++++++.|+.|-++++.++.+||-+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999988664
Done!