BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009178
(541 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R2Y3|DOLK_MOUSE Dolichol kinase OS=Mus musculus GN=Dolk PE=2 SV=1
Length = 534
Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 98/249 (39%), Positives = 142/249 (57%), Gaps = 21/249 (8%)
Query: 296 HPLLWVLTFVFSEPLKRLSLCIYWVSLI-FASVLRFYNISKNSKIER------ILLRKYY 348
+PLLW+L F+F R+ L YW L A ++ Y +K S E + RKY+
Sbjct: 278 NPLLWLLQFLFYTE-TRIYLLAYWSLLASVACLVVLYQNAKRSSSESKKHRAPTITRKYF 336
Query: 349 HLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVWRIWPLGQFIHQFMTAFTDHRD 408
H + V ++P +IF L++A LAVF+ LE +R +RI PLG + ++ F D RD
Sbjct: 337 HFIVVATYIPGIIFDRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSLLSLFLDERD 396
Query: 409 SDLLIVSHFSLLLGCALPIWM--------SSGFNDRPLAPFAGILSLGIGDTMASIVGYK 460
S LI++H LLLG +LPIW+ S R L P+AG+L++G+GDT+ASI G
Sbjct: 397 SGPLILTHIYLLLGMSLPIWLIPRPCTQKDSLEGARALVPYAGVLAVGVGDTVASIFGST 456
Query: 461 YGVLRWSKTGKKTIEGTAAGITSVLAA-CSILLPLLASTGYIFTEHWFSLILAVTVSSLL 519
G +RW T KKT EGT +TS+ A S+ L L+ +G + ++ +++ SLL
Sbjct: 457 MGEIRWPGT-KKTFEGT---MTSIFAQIISVALILIFDSGVDLNYSYAWILGSISTVSLL 512
Query: 520 EAYTTQLDN 528
EAYTTQ+DN
Sbjct: 513 EAYTTQIDN 521
>sp|Q58CR4|DOLK_BOVIN Dolichol kinase OS=Bos taurus GN=DOLK PE=2 SV=1
Length = 538
Score = 149 bits (376), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 21/249 (8%)
Query: 296 HPLLWVLTFVFSEPLKRLSLCIYWVSL-IFASVLRFYNISKNSKIER------ILLRKYY 348
+PLLW+ F+F R+ L YW L A ++ Y +K S E + RKY+
Sbjct: 282 NPLLWLFQFLFQTE-TRVYLLAYWCLLATVACLVVLYQNAKRSSSESKKHQAPTITRKYF 340
Query: 349 HLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVWRIWPLGQFIHQFMTAFTDHRD 408
H + V ++P +I L++A LAVF+ LE +R +RI PLG + ++ F D RD
Sbjct: 341 HFIVVATYIPGIILDRPLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSLLSLFLDERD 400
Query: 409 SDLLIVSHFSLLLGCALPIWM--------SSGFNDRPLAPFAGILSLGIGDTMASIVGYK 460
S LI++H LLLG +LPIW+ S R L P+AG+L++G+GDT+ASI G
Sbjct: 401 SGPLILTHIYLLLGMSLPIWLVPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGST 460
Query: 461 YGVLRWSKTGKKTIEGTAAGITSVLAA-CSILLPLLASTGYIFTEHWFSLILAVTVSSLL 519
G +RW T KKT EGT +TS+ A S+ L L+ +G + ++ +++ SLL
Sbjct: 461 MGEIRWPGT-KKTFEGT---MTSIFAQIISVALILIFDSGVDLNYSYAWILGSISTVSLL 516
Query: 520 EAYTTQLDN 528
EAYTTQ+DN
Sbjct: 517 EAYTTQIDN 525
>sp|Q9UPQ8|DOLK_HUMAN Dolichol kinase OS=Homo sapiens GN=DOLK PE=1 SV=1
Length = 538
Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 134/233 (57%), Gaps = 20/233 (8%)
Query: 312 RLSLCIYWVSL-IFASVLRFYNISKNSKIER------ILLRKYYHLLAVLMFVPALIFQP 364
R+ L YW L A ++ Y +K S E + RKY+HL+ V ++P +IF
Sbjct: 297 RIYLLAYWSLLATLACLVVLYQNAKRSSSESKKHQAPTIARKYFHLIVVATYIPGIIFDR 356
Query: 365 KFLHLAFGAALAVFLVLEIMRVWRIWPLGQFIHQFMTAFTDHRDSDLLIVSHFSLLLGCA 424
L++A LAVF+ LE +R +RI PLG + F++ F D RDS LI++H LLLG +
Sbjct: 357 PLLYVAATVCLAVFIFLEYVRYFRIKPLGHTLRSFLSLFLDERDSGPLILTHIYLLLGMS 416
Query: 425 LPIWM--------SSGFNDRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTIEG 476
LPIW+ S R L P+AG+L++G+GDT+ASI G G +RW T KKT EG
Sbjct: 417 LPIWLIPRPCTQKGSLGGARALVPYAGVLAVGVGDTVASIFGSTMGEIRWPGT-KKTFEG 475
Query: 477 TAAGITSVLAA-CSILLPLLASTGYIFTEHWFSLILAVTVSSLLEAYTTQLDN 528
T +TS+ A S+ L L+ +G + ++ +++ SLLEAYTTQ+DN
Sbjct: 476 T---MTSIFAQIISVALILIFDSGVDLNYSYAWILGSISTVSLLEAYTTQIDN 525
>sp|Q9Y7T6|SEC59_SCHPO Dolichol kinase sec59 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec59 PE=3 SV=3
Length = 504
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 113/193 (58%), Gaps = 10/193 (5%)
Query: 345 RKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVWRIWPLGQFIHQFMTAFT 404
RK YH L V +F+P P FLHL+F L +FL +E +R+ R+ P G+ IH+F+ +T
Sbjct: 308 RKTYHALVVFLFLPVCCLDPHFLHLSFSGVLFIFLFVEGIRILRLKPFGKMIHEFLWEYT 367
Query: 405 DHRD-SDLLIVSHFSLLLGCALPIWMSSGFNDRPLAP---FAGILSLGIGDTMASIVGYK 460
D+RD LI+SH LL+GCA+PIW+S+ P+A G+L LG GD+MASI+G +
Sbjct: 368 DNRDHKGPLIISHIYLLIGCAIPIWLSNALKG-PVASVELLVGVLCLGCGDSMASIIGKR 426
Query: 461 YGVLRWSKTGKKTIEGTAAGITSVLAACSILLPLLASTGYIFTEHWFSLILAVTVSSLLE 520
+G R SKT K+IEG A SV + F W +L +++ +++LE
Sbjct: 427 FGKHRISKT-NKSIEGVFAFSISVFLVLHLTQAFHVCPSVTF---WKTLFMSL-CTAILE 481
Query: 521 AYTTQLDNAFIPL 533
+T+ DN +P+
Sbjct: 482 GVSTENDNLILPM 494
>sp|P20048|SEC59_YEAST Dolichol kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEC59 PE=1 SV=1
Length = 519
Score = 105 bits (262), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%)
Query: 296 HPLLWVLTFVFSEPLKRLSLCIYWVSLIFASVLRFYNISKNSKIERILLRKYYHLLAVLM 355
+PLLW++ ++ E R + W S++ S+ I K+S + RK +H + L+
Sbjct: 283 NPLLWLVKYIL-ESTIRQKILFAWSSILILSIPSIL-IEKDS-LSLNTSRKLWHFIIFLL 339
Query: 356 FVPALIFQPKFLHLAFGAALAVFLVLEIMRVWRIWPLGQFIHQFMTAFTDHRD-SDLLIV 414
+P+ F+ +A + VFL +E +R + PLG I + F D RD S LI+
Sbjct: 340 IIPSFQMDSNFVKIALSGTIPVFLSIEYIRFQNLPPLGSAIELQLRRFADDRDHSGPLII 399
Query: 415 SHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTI 474
S+ LL G + P+ M N+ P+ G++ LGIGD++ASI+G +YG +RW T +KT+
Sbjct: 400 SYLYLLFGISTPLLM----NNSPM----GLIGLGIGDSLASIIGKRYGRIRWKGT-QKTL 450
Query: 475 EGTAAGITSVLAACSILLPLLASTGYIFTE-HWFSLILAVTVSSLLEAYTTQLDNAFIP 532
EGT A I + C +LL IF L+ T+S +LE + DN IP
Sbjct: 451 EGTLAFIVTSFIVCLVLLRF--DKAAIFNHLTTLQLLTLCTLSGVLEGNSVLNDNILIP 507
>sp|Q58537|Y1137_METJA Uncharacterized protein MJ1137 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1137 PE=4 SV=1
Length = 191
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 435 DRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACSILLPL 494
D A F GIL +GD++A+I+G + G L+ G KT+EG A S A IL P
Sbjct: 86 DDIKAVFFGILVFAVGDSLATIIGIR-GKLKIKYFG-KTVEGFLAFFIS---ASLILYPF 140
Query: 495 LASTGYIFTEHWFSLILAVTVSSLLEAYTTQL---DNAFIPLI 534
+ G I +S+ +E + ++ DN ++P I
Sbjct: 141 YGTYG----------IFVALISAFIEFVSKKIRIDDNLYLPFI 173
>sp|Q67ZM7|PHYK2_ARATH Probable phytol kinase 2, chloroplastic OS=Arabidopsis thaliana
GN=At5g58560 PE=2 SV=2
Length = 307
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 72/268 (26%), Positives = 112/268 (41%), Gaps = 21/268 (7%)
Query: 268 SLLFFSSLGFILVVIIPSWMQIVQDFHVHPLLW--VLTFVFSEPLKRLSLCIYWVSLIFA 325
SL FFS + L V I + + F + + +F E +C + V+ I A
Sbjct: 28 SLAFFSPIPRFLTVRIATSFRSSSRFPATKIRKSSLAAVMFPENSVLSDVCAFGVTSIVA 87
Query: 326 -SVLRFY-NISKNSKIERILLRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFLV-LE 382
S L F+ I K ++ L+RK H+ L+F ++ P F GA A + L
Sbjct: 88 FSCLGFWGEIGKRGIFDQKLIRKLVHINIGLVF---MLCWPLFSSGIQGALFASLVPGLN 144
Query: 383 IMRVWRIWPLGQFIHQ-FMTAFTDHRDSDLLIVSHFSLLLG---CALPIWMSSGFNDRPL 438
I+R+ + LG + + + + + H D L+ +L + W SS P+
Sbjct: 145 IVRML-LLGLGVYHDEGTIKSMSRHGDRRELLKGPLYYVLSITSACIYYWKSS-----PI 198
Query: 439 APFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACSILLPLLAST 498
A A I +L GD MA IVG ++G + K+ G+ T+ A + AS
Sbjct: 199 A-IAVICNLCAGDGMADIVGRRFGTEKLPYNKNKSFAGSIGMATAGFLASVAYMYYFASF 257
Query: 499 GYIFTEHWFSLILAVTVSSLLEAYTTQL 526
GYI E +IL V S+ A L
Sbjct: 258 GYI--EDSGGMILRFLVISIASALVESL 283
>sp|O67258|SYK_AQUAE Lysine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=lysS PE=3
SV=1
Length = 597
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 13/157 (8%)
Query: 198 FPSCASIGELLLVTVGLVLYFGDMLACTIAKGVVLGLLLFPLLLK-YALHLSEGYFNKRY 256
F +G+++ V L L + + +L L PL K + L E + +RY
Sbjct: 198 FNDYIDVGDIVGVRGKLFRTNTGELTVEVEEYQLLAKSLHPLPEKWHGLKDVEVRYRQRY 257
Query: 257 ------SEARRSNEIRTSLL-----FFSSLGFILVVIIPSWMQIVQDFHVHPLLWVLTFV 305
EARR +RT L+ FF GFI V P I + P + F+
Sbjct: 258 LDLIANPEARRIFMLRTKLITEMRKFFEMHGFIEVET-PILQPIASGANARPFVTYHNFL 316
Query: 306 FSEPLKRLSLCIYWVSLIFASVLRFYNISKNSKIERI 342
+E R++ +Y LI R Y I KN + E +
Sbjct: 317 ETELYLRIAPELYLKRLIVGGFPRVYEIGKNFRNESV 353
>sp|Q2N2K3|PHYK_WHEAT Probable phytol kinase, chloroplastic OS=Triticum aestivum PE=2
SV=1
Length = 300
Score = 33.1 bits (74), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 433 FNDRPLAPFAGILSLGI---GDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACS 489
+ D P+ GI+SL + GD A IVG ++G L+ KK+ G+AA S +
Sbjct: 180 WRDSPI----GIVSLSMMSGGDGFADIVGRRFGSLKLPFNKKKSWVGSAAMFISGFLLSA 235
Query: 490 ILLPLLASTGYIFTEHWFSLI-------LAVTVSSLLEAYTTQLDNAFIPL 533
++L + GYI W + LA TV + DN +PL
Sbjct: 236 LMLSYFSWLGYIHVS-WDQALGKLVLVALAATVVECIPVTDVVDDNISVPL 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.142 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,674,194
Number of Sequences: 539616
Number of extensions: 7193471
Number of successful extensions: 20771
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 20731
Number of HSP's gapped (non-prelim): 31
length of query: 541
length of database: 191,569,459
effective HSP length: 122
effective length of query: 419
effective length of database: 125,736,307
effective search space: 52683512633
effective search space used: 52683512633
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 64 (29.3 bits)