Query 009178
Match_columns 541
No_of_seqs 249 out of 841
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 21:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2468 Dolichol kinase [Lipid 100.0 7.2E-79 1.6E-83 635.2 41.3 486 5-541 6-510 (510)
2 COG0170 SEC59 Dolichol kinase 99.9 5.4E-23 1.2E-27 202.4 16.8 192 338-539 14-211 (216)
3 KOG4453 Predicted ER membrane 99.8 2.4E-19 5.2E-24 175.2 14.6 144 390-539 114-265 (269)
4 PF01148 CTP_transf_1: Cytidyl 99.6 7.7E-15 1.7E-19 144.2 17.9 100 435-538 127-251 (259)
5 PRK11624 cdsA CDP-diglyceride 97.8 3.3E-05 7.2E-10 79.7 6.8 50 442-491 156-207 (285)
6 PLN02594 phosphatidate cytidyl 97.8 0.00057 1.2E-08 72.2 15.8 51 441-491 128-179 (342)
7 COG0575 CdsA CDP-diglyceride s 97.7 0.0014 3E-08 66.8 15.5 50 442-491 138-189 (265)
8 PLN02953 phosphatidate cytidyl 97.0 0.0012 2.5E-08 71.0 6.5 49 443-491 274-323 (403)
9 KOG1440 CDP-diacylglycerol syn 96.8 0.0073 1.6E-07 65.1 10.3 111 380-490 156-273 (432)
10 PRK04032 hypothetical protein; 92.9 0.22 4.9E-06 47.8 6.0 34 457-491 22-56 (159)
11 COG4589 Predicted CDP-diglycer 92.2 1.7 3.6E-05 44.8 11.3 48 444-491 180-229 (303)
12 TIGR00297 conserved hypothetic 91.8 8.7 0.00019 39.3 15.9 52 439-490 113-174 (237)
13 COG1836 Predicted membrane pro 89.9 20 0.00042 36.9 16.3 52 439-490 122-183 (247)
14 PF01940 DUF92: Integral membr 87.2 7.2 0.00016 39.6 11.3 53 439-491 108-170 (226)
15 PF01864 DUF46: Putative integ 68.3 12 0.00026 36.6 5.9 33 458-491 34-67 (175)
16 PF06645 SPC12: Microsomal sig 43.0 49 0.0011 28.0 4.7 25 273-301 43-67 (76)
17 PF01148 CTP_transf_1: Cytidyl 34.5 4.5E+02 0.0097 25.7 13.9 44 344-388 2-45 (259)
18 CHL00182 tatC Sec-independent 31.2 6E+02 0.013 26.1 16.9 55 236-293 93-150 (249)
19 PF01554 MatE: MatE; InterPro 28.8 86 0.0019 28.0 4.3 31 442-473 41-71 (162)
20 KOG2468 Dolichol kinase [Lipid 24.4 39 0.00084 37.8 1.4 89 34-128 42-141 (510)
21 PRK10921 twin-arginine protein 23.7 8.2E+02 0.018 25.2 20.0 60 231-293 77-140 (258)
22 COG3714 Predicted membrane pro 23.6 3.2E+02 0.007 27.8 7.5 100 424-538 40-140 (212)
23 PF03189 Otopetrin: Otopetrin; 21.7 2.8E+02 0.0062 30.8 7.5 19 65-83 237-255 (441)
No 1
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=100.00 E-value=7.2e-79 Score=635.23 Aligned_cols=486 Identities=36% Similarity=0.535 Sum_probs=416.2
Q ss_pred ccccccceehhhhhHHHHHhhccccccccchhHHHHHHHHHhhheeecc-cccccccccCCCCCcccccccccchHHHHH
Q 009178 5 SSMLNGERGVVVLIVCRVLYSLPLSLLCPGLNLAILSLFALFLDIRLDD-SAALSRFKTRPGASSGILLGAVTLPTVMIS 83 (541)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~-~~~~~~~~~r~~a~sg~~lg~~~~p~~m~~ 83 (541)
++...+|+..|.-.+.|.....|..+-+|+........+|.+++++-+. +-+..++--|-+|.++++.+|+ |++|.+
T Consensus 6 t~~~s~~~~~~~~~i~~~~~~~~v~~~~r~f~~~~~~fs~~~i~~~~~~~~~~~~~~~~~~~a~~~~l~~a~--~~v~~~ 83 (510)
T KOG2468|consen 6 TTEGSQEPTEVGSKIDRRTRKFDVVLNSRDFECFLSSFSATAIALRTNFGPVEWLQLLSIVTADISFLQIAV--PVVCLI 83 (510)
T ss_pred CCCCCCCCcccceehhhhhhccceeeeechHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhhhhhcc--hhhhHH
Confidence 3677899999999999999999999999999998888888888877776 4455666677788888888886 999999
Q ss_pred HHHHHHHhhchhhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCCCCCCCCcceeeccccchhhHHHHHHHHHHH
Q 009178 84 KLIQLTRAYSLQQIELQELEHMTMQYWATSASCFGVLIFLCLVVLSTPNTKRFPRSFSVWDATLSIFCVASYAVTCCVSL 163 (541)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (541)
+.+|..+++..+. .+++-++.+..+.+++++.+.++.++.. . + .+.+..++.+..
T Consensus 84 ~~v~~~~~~~~~~---aa~~s~c~f~i~~s~~~~~v~~l~sl~s---~--------~-----------~v~~~la~~v~~ 138 (510)
T KOG2468|consen 84 MVVQILLKYWQHG---AAYKSLCFFLIIYSLTGPLVVSLLSLLS---S--------T-----------VVNTGLAGFVLN 138 (510)
T ss_pred HHHHHHHHHHhcc---ccccchhHHHHHHHHHHHHHHHHHHhcc---c--------c-----------hHHHHHHHHhhH
Confidence 9999999887773 6688889999999999999998888763 2 1 455666777777
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcchHHHHhHhHHHHhhhhhhhhhch--------------h
Q 009178 164 AAISHTGSNTVLKLMWELYHGLVAVMLIQRLLDKFPSCASIGELLLVTVGLVLYFGDMLACTIAK--------------G 229 (541)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~P~cft~gEa~lv~~g~~l~~~~~~~~~l~~--------------~ 229 (541)
...+|++....+...|..++++..+ ++++||||||+|||.++++|++++++|.++|..++ .
T Consensus 139 s~~~ht~~v~~~~m~~~~~~~f~~~-----ll~~~~~~~t~gEallv~~Glv~~~~s~i~~~~~~~~~~l~pv~~vs~~~ 213 (510)
T KOG2468|consen 139 SYRWHTQLVVEILMLCLIFFIFEAG-----LLLKFPRSFTIGEALLVILGLVGQLKSLINRDSNLFSSLLTPVLLVSLAL 213 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHhcCccccccchHHHHHHHHHHHHHHHHhhhcchheeccCcceeeehHH
Confidence 7778998877777888888877776 79999999999999999999999999999998643 2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhcccccchhhhhhhhhHHHHHHHH-HHHHHHHhhhhhHHHHHhhcccchHHHHHHHHhcC
Q 009178 230 VVLGLLLFPLLLKYALHLSEGYFNKRYSEARRSNEIRTSLLFFS-SLGFILVVIIPSWMQIVQDFHVHPLLWVLTFVFSE 308 (541)
Q Consensus 230 ~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~~-~~~~v~~~~~p~~~~~~~~~~~~P~~Wl~~fi~~~ 308 (541)
.+.|.++..++++.... ++.+. .++++..||. ++...+++..|.|.+. .+++|++|+++|++++
T Consensus 214 ~v~~~lL~~~il~~~~~----l~l~~--------tl~~~~~f~~~t~ll~~~V~~p~~~~~---~~~~PlLWL~qfif~~ 278 (510)
T KOG2468|consen 214 TVHGRLLKGCILALTFI----LVLSY--------TLAKVCHFYLFTLLLSFAVGLPWFANT---FRHLPLLWLVQFIFSS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHH----HHhhH--------HhhhhhHHHHHHHHHHHHHhhHHHHhh---hccCcHHHHHHHHHHh
Confidence 24466777776654444 22222 4566666664 4444457888977754 5789999999999976
Q ss_pred ChhHHHHHHHHHHHHHHH-HHHHHhhccCCccchhhhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHh
Q 009178 309 PLKRLSLCIYWVSLIFAS-VLRFYNISKNSKIERILLRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVW 387 (541)
Q Consensus 309 ~~~R~~l~~yWl~~l~~~-v~~~~~i~~~~~~~~~~~RKifHilavl~f~P~i~~dp~fl~lal~v~laiFillE~lR~~ 387 (541)
.+|+.+++||..++.++ ..+.||+++++|.+++..||+||++++.+|+|+..+||+|+++++++++++|+.+|++|++
T Consensus 279 -~~Rl~ili~W~lllvls~~svl~q~~sSs~~~~t~~RK~~HlliV~l~iP~li~d~~fL~lA~s~~LavFl~lE~IR~~ 357 (510)
T KOG2468|consen 279 -LTRLKILIYWSLLLVLSILSVLYQIDSSSKLNETTSRKYFHLLIVLLYIPGLIFDPNFLYLAFSGALAVFLFLEYIRFL 357 (510)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHccchhhhhHHHHHHHHHHHHHHHHhhHHhcCchhHHHHHhhHHHHHHHHHHHHHh
Confidence 78999999999877665 4568898877788888999999999999999999999999999999999999999999999
Q ss_pred hcCccHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhhcCCCC--CCchhHHHHHHHhhcccchhhhhhhccccc
Q 009178 388 RIWPLGQFIHQFMTAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGFND--RPLAPFAGILSLGIGDTMASIVGYKYGVLR 465 (541)
Q Consensus 388 ~i~p~~~~I~~~l~~F~DeRDsg~lils~IYLLlG~alplwl~~~~~~--~~li~~aGIL~LgiGDs~ASIVG~rfGr~K 465 (541)
|+||+|+.+|+++++|.||||+||+++||+||++||++|+|+.++..+ +.+.+++|++.+|+||+|||+||+||||+|
T Consensus 358 ri~PlG~~l~~fl~~F~DeRDsGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~laGiLalGiGDTmASiiG~r~G~~R 437 (510)
T KOG2468|consen 358 RIPPLGSALHLFLSRFTDERDSGPLIISHFYLLIGCSLPIWMSNSPCGGDRALALLAGILALGIGDTMASIIGKRYGRIR 437 (510)
T ss_pred cCCCchHHHHHHHHHhcccccCCceeHHHHHHHHhcccchhccCCCCCchhhhhhhhhheeeccchHHHHHHhhhhccee
Confidence 999999999999999999999999999999999999999999986543 778889999999999999999999999999
Q ss_pred cCCCCCcceehhHHHHHHHHHHHHHHHHhhhhcCccchhhHHHHHHHHHHHHHHHhcCCCCCceecHHHHHHhhcC
Q 009178 466 WSKTGKKTIEGTAAGITSVLAACSILLPLLASTGYIFTEHWFSLILAVTVSSLLEAYTTQLDNAFIPLIFYSHLCL 541 (541)
Q Consensus 466 w~~~~~KTlEGSlAfflss~l~~~lll~ll~~~g~~~~~~~~~lll~aivatLlEa~s~~~DNL~IPL~~~~lL~l 541 (541)
|+++ |||+|||+|++++++++|.++. +.+.|+..++.|+..+.++..++++||+|+|+||+.+|+++|+++++
T Consensus 438 W~~T-kKTlEGT~Afivs~~iv~~ll~--i~~~~v~~~~t~~~~L~a~~~salLEa~T~q~DNlllPl~~~il~~l 510 (510)
T KOG2468|consen 438 WSGT-KKTLEGTLAFIVSSFIVCLLLL--IFKAGVFLSLTWWQTLFACLLSALLEAYTTQNDNLLLPLYMYILLKL 510 (510)
T ss_pred cCCC-cceeehhhHHHHHHHHHHHHHH--HhhcccccchHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhcC
Confidence 9886 8999999999999999998764 45668877889999999999999999999999999999999999985
No 2
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=99.90 E-value=5.4e-23 Score=202.40 Aligned_cols=192 Identities=21% Similarity=0.259 Sum_probs=122.3
Q ss_pred ccchhhhHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHH-H-HHHHHHhhcC---ccHHHHHHHHHHhcccCCCc-c
Q 009178 338 KIERILLRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFL-V-LEIMRVWRIW---PLGQFIHQFMTAFTDHRDSD-L 411 (541)
Q Consensus 338 ~~~~~~~RKifHilavl~f~P~i~~dp~fl~lal~v~laiFi-l-lE~lR~~~i~---p~~~~I~~~l~~F~DeRDsg-~ 411 (541)
..+.+..||.+|+..+.........+ ++........+.++. . .|+.|..... .....++++...+.|+||++ +
T Consensus 14 ~~~~~~~rk~~hi~~~~l~~~~~~~~-~~~~~~~~~i~~~i~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~e~~~~ 92 (216)
T COG0170 14 DTRLEVRRKLLHISGGLLFLLYILRD-KFAIILFLLILLIILLLEFELFRLLIPGLEGKVTLLLSELLSLIEREREKNGP 92 (216)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhHHHhcCC
Confidence 44567899999999887766554444 444333333332222 2 5666664221 11235556666777777774 4
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHhhcccchhhhhhhccccccCCCCCcceehhHHHHHHHHHHHHHH
Q 009178 412 LIVSHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 412 lils~IYLLlG~alplwl~~~~~~~~li~~aGIL~LgiGDs~ASIVG~rfGr~Kw~~~~~KTlEGSlAfflss~l~~~ll 491 (541)
..+..|+..+..+..++.. +. ..+.+|++++++||++||++|+||||||++.+++||+|||+|+|+++++++.++
T Consensus 93 -~~g~~~~~~~~~i~~~~lf---~~-~~~~~~I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~~~~ 167 (216)
T COG0170 93 -GLGGIIYFIGGGLLASLLF---PI-EVAIAGILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVL 167 (216)
T ss_pred -CcCcHHHHHHHHHHHHHHc---cH-HHHHHHHHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHHHHH
Confidence 4455666666566555432 22 367899999999999999999999999888788999999999999999988765
Q ss_pred HHhhhhcCccchhhHHHHHHHHHHHHHHHhcCCCCCceecHHHHHHhh
Q 009178 492 LPLLASTGYIFTEHWFSLILAVTVSSLLEAYTTQLDNAFIPLIFYSHL 539 (541)
Q Consensus 492 l~ll~~~g~~~~~~~~~lll~aivatLlEa~s~~~DNL~IPL~~~~lL 539 (541)
..+.. ......+.........++..| ..+.|||+++|+++..+.
T Consensus 168 ~~~~~---~~~~~i~~~~~~~~~~~~~~~-~~~~~DNltIPl~~~~~~ 211 (216)
T COG0170 168 YGYLG---AFVGAIGALVLEVGATATSLE-LLPLDDNLTIPLFAALLA 211 (216)
T ss_pred HHHHH---hHHHHHHHHHHHHHHHHhhcc-CCCCCCceeHHHHHHHHH
Confidence 33221 000001111111122223333 567899999999987753
No 3
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=99.81 E-value=2.4e-19 Score=175.20 Aligned_cols=144 Identities=21% Similarity=0.268 Sum_probs=107.5
Q ss_pred CccHHHHHHHHHHhcccCCCcchhhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHhhcccchhhhhhhccccccCCC
Q 009178 390 WPLGQFIHQFMTAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKT 469 (541)
Q Consensus 390 ~p~~~~I~~~l~~F~DeRDsg~lils~IYLLlG~alplwl~~~~~~~~li~~aGIL~LgiGDs~ASIVG~rfGr~Kw~~~ 469 (541)
|-|++...+-+....||.+++.++ +++|+.+|+.+..-++ |++.| +..+..+.+.|++|++||||||+.|.|.+
T Consensus 114 P~FsrLy~r~lg~lmre~erhl~n-GvLfYvLgl~fs~~ff--~kesp---i~s~~LlswcDt~AdtvGRKfG~~tpk~a 187 (269)
T KOG4453|consen 114 PIFSRLYIRGLGILMREVERHLLN-GVLFYVLGLLFSAVFF--WKESP---IGSISLLSWCDTIADTVGRKFGSTTPKYA 187 (269)
T ss_pred HHHHHHHHhcccccchHHHHHHhc-chHHHHHHHHHHhhcc--ccccH---HHHHHHHHHhhhHHHHHhhhccccCCCcC
Confidence 333444445555556666665444 7789999976666554 24444 45666666679999999999999999988
Q ss_pred CCcceehhHHHHHHHHHHHHHHHHhhhhcC--ccchh---h-HHHHHHHHHHHHHHHhc--CCCCCceecHHHHHHhh
Q 009178 470 GKKTIEGTAAGITSVLAACSILLPLLASTG--YIFTE---H-WFSLILAVTVSSLLEAY--TTQLDNAFIPLIFYSHL 539 (541)
Q Consensus 470 ~~KTlEGSlAfflss~l~~~lll~ll~~~g--~~~~~---~-~~~lll~aivatLlEa~--s~~~DNL~IPL~~~~lL 539 (541)
.|||+.||+++|...++.|+++++++.+.| |...+ + ....++.+++++++|+. ++.|||++||+....+.
T Consensus 188 knKSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r~~~~~l~l~~g~vaAlvEsldi~~lDDNltIpv~Sal~~ 265 (269)
T KOG4453|consen 188 KNKSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWRETTLQLVLMVGMVAALVESLDITDLDDNLTIPVASALAA 265 (269)
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHhccCcchhccccccchHHHHHHHHHHHHHHhcCCccCCCCCeeehHHHHHHH
Confidence 899999999999999999999888877655 54322 1 12356778999999999 78999999999887653
No 4
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=99.64 E-value=7.7e-15 Score=144.22 Aligned_cols=100 Identities=34% Similarity=0.419 Sum_probs=71.6
Q ss_pred CCCchhHHHHHHHhhcccchhhhhhhccccccC-CCCCcceehhHHHHHHHHHHHHHHHHhhhhcCccchhhHHHHHHHH
Q 009178 435 DRPLAPFAGILSLGIGDTMASIVGYKYGVLRWS-KTGKKTIEGTAAGITSVLAACSILLPLLASTGYIFTEHWFSLILAV 513 (541)
Q Consensus 435 ~~~li~~aGIL~LgiGDs~ASIVG~rfGr~Kw~-~~~~KTlEGSlAfflss~l~~~lll~ll~~~g~~~~~~~~~lll~a 513 (541)
+.+.....+++++++||++|+++|++||||++| .++|||+|||+++++++++++.++..+..... .++...+..+
T Consensus 127 ~~~~~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~----~~~~~~~~~~ 202 (259)
T PF01148_consen 127 FGPPLALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSFF----LSWWQAILIS 202 (259)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchh----hHHHHHHHHH
Confidence 344567899999999999999999999999666 46799999999999999988776544322110 2333344444
Q ss_pred HHHHHHHhc-----C-------------------CCCCceecHHHHHHh
Q 009178 514 TVSSLLEAY-----T-------------------TQLDNAFIPLIFYSH 538 (541)
Q Consensus 514 ivatLlEa~-----s-------------------~~~DNL~IPL~~~~l 538 (541)
++++++|++ + ..+||+-.|++....
T Consensus 203 ~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~ 251 (259)
T PF01148_consen 203 LLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPV 251 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHH
Confidence 444555544 2 248999999887654
No 5
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=97.82 E-value=3.3e-05 Score=79.67 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=40.8
Q ss_pred HHHHHHhhcccchhhhhhhccccccC--CCCCcceehhHHHHHHHHHHHHHH
Q 009178 442 AGILSLGIGDTMASIVGYKYGVLRWS--KTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 442 aGIL~LgiGDs~ASIVG~rfGr~Kw~--~~~~KTlEGSlAfflss~l~~~ll 491 (541)
.-++.....|+.|-.+||+|||||.. -++|||+||++++++++.+++.++
T Consensus 156 ~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~ 207 (285)
T PRK11624 156 YVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLF 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHH
Confidence 44455667999999999999999964 378999999999999887765544
No 6
>PLN02594 phosphatidate cytidylyltransferase
Probab=97.81 E-value=0.00057 Score=72.21 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=43.0
Q ss_pred HHHHHHHhhcccchhhhhhhccccccC-CCCCcceehhHHHHHHHHHHHHHH
Q 009178 441 FAGILSLGIGDTMASIVGYKYGVLRWS-KTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 441 ~aGIL~LgiGDs~ASIVG~rfGr~Kw~-~~~~KTlEGSlAfflss~l~~~ll 491 (541)
...+..+-..|.+|-++|+++||||.. -+.|||+||.+++++++.+++.++
T Consensus 128 ~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~ 179 (342)
T PLN02594 128 LLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTLISAFYL 179 (342)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHHHHHHHH
Confidence 455666778999999999999999976 377999999999999988776655
No 7
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=97.66 E-value=0.0014 Score=66.84 Aligned_cols=50 Identities=26% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHHHhhcccchhhhhhhccccc-cC-CCCCcceehhHHHHHHHHHHHHHH
Q 009178 442 AGILSLGIGDTMASIVGYKYGVLR-WS-KTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 442 aGIL~LgiGDs~ASIVG~rfGr~K-w~-~~~~KTlEGSlAfflss~l~~~ll 491 (541)
.-.+..-.+|+.|..+||++|||| .| -+.|||+||.+++.+.+.+++...
T Consensus 138 ~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~ 189 (265)
T COG0575 138 LLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLV 189 (265)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHH
Confidence 344455679999999999999998 55 478999999999998877666554
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=97.02 E-value=0.0012 Score=70.98 Aligned_cols=49 Identities=29% Similarity=0.338 Sum_probs=39.8
Q ss_pred HHHHHhhcccchhhhhhhccccccC-CCCCcceehhHHHHHHHHHHHHHH
Q 009178 443 GILSLGIGDTMASIVGYKYGVLRWS-KTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 443 GIL~LgiGDs~ASIVG~rfGr~Kw~-~~~~KTlEGSlAfflss~l~~~ll 491 (541)
-++..-..|+.|-++|+++||||.+ -+.|||+||.+++++++.++..+.
T Consensus 274 ~~~~vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~ 323 (403)
T PLN02953 274 SFSGVIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILL 323 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHH
Confidence 3344455899999999999999987 377899999999998887766544
No 9
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=96.81 E-value=0.0073 Score=65.10 Aligned_cols=111 Identities=18% Similarity=0.187 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCccHHHHHHHHHHhcccCC------CcchhhHHHHHHHHHHHHHHhhcCCCCCCchhHHHHHHHhhcccc
Q 009178 380 VLEIMRVWRIWPLGQFIHQFMTAFTDHRD------SDLLIVSHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLGIGDTM 453 (541)
Q Consensus 380 llE~lR~~~i~p~~~~I~~~l~~F~DeRD------sg~lils~IYLLlG~alplwl~~~~~~~~li~~aGIL~LgiGDs~ 453 (541)
+.+.+|+.+..++..++..++.--..=|. -+.+..+|..+++-++-....-.+..+.-.--......+-.+|-+
T Consensus 156 l~~LV~yh~fi~f~lYi~gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~ 235 (432)
T KOG1440|consen 156 LFFLVRYHRFICFALYLIGFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIF 235 (432)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchH
Confidence 44566666666665555544332222122 144667888777655544443222111111123445556789999
Q ss_pred hhhhhhhccccccC-CCCCcceehhHHHHHHHHHHHHH
Q 009178 454 ASIVGYKYGVLRWS-KTGKKTIEGTAAGITSVLAACSI 490 (541)
Q Consensus 454 ASIVG~rfGr~Kw~-~~~~KTlEGSlAfflss~l~~~l 490 (541)
|-++|.+|||++.- -+.||||||-+++.+++.+...+
T Consensus 236 AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~ 273 (432)
T KOG1440|consen 236 AYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGIL 273 (432)
T ss_pred HHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHH
Confidence 99999999998865 47799999999996666554433
No 10
>PRK04032 hypothetical protein; Provisional
Probab=92.94 E-value=0.22 Score=47.77 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=25.4
Q ss_pred hhhhc-cccccCCCCCcceehhHHHHHHHHHHHHHH
Q 009178 457 VGYKY-GVLRWSKTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 457 VG~rf-Gr~Kw~~~~~KTlEGSlAfflss~l~~~ll 491 (541)
-|+++ +.+|. -+.||||||.+++++.+.+++.++
T Consensus 22 ~g~~~~dg~~i-iSP~KTwEG~iGGv~~~~l~~~~~ 56 (159)
T PRK04032 22 FGKTFVDGRRI-LGDGKTWRGLIGGILFGTLVGLIQ 56 (159)
T ss_pred CCCcCCCCCee-CCCCCcHHHhHHHHHHHHHHHHHH
Confidence 37888 34444 457899999999999887776655
No 11
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=92.18 E-value=1.7 Score=44.84 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=39.4
Q ss_pred HHHHhhcccchhhhhhhccccccC--CCCCcceehhHHHHHHHHHHHHHH
Q 009178 444 ILSLGIGDTMASIVGYKYGVLRWS--KTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 444 IL~LgiGDs~ASIVG~rfGr~Kw~--~~~~KTlEGSlAfflss~l~~~ll 491 (541)
+...-..|-+--+-||.|||||.. -+.+||+||-+++.+++.++..++
T Consensus 180 li~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l 229 (303)
T COG4589 180 LILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAIL 229 (303)
T ss_pred HHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHH
Confidence 334457899999999999999975 367899999999999887776655
No 12
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=91.76 E-value=8.7 Score=39.30 Aligned_cols=52 Identities=31% Similarity=0.459 Sum_probs=41.0
Q ss_pred hhHHHHHHHhhcccchhhhhhhcccccc--------C-C-CCCcceehhHHHHHHHHHHHHH
Q 009178 439 APFAGILSLGIGDTMASIVGYKYGVLRW--------S-K-TGKKTIEGTAAGITSVLAACSI 490 (541)
Q Consensus 439 i~~aGIL~LgiGDs~ASIVG~rfGr~Kw--------~-~-~~~KTlEGSlAfflss~l~~~l 490 (541)
..+.|-+.-.-+||+||=+|+.++|+.+ | + ++.=|++||+|.+++++++...
T Consensus 113 ~~f~~s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 113 LGYVASVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHHHHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 3578888889999999999999987332 2 2 4558999999999998876643
No 13
>COG1836 Predicted membrane protein [Function unknown]
Probab=89.90 E-value=20 Score=36.92 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhcccchhhhhhhcccccc---------CC-CCCcceehhHHHHHHHHHHHHH
Q 009178 439 APFAGILSLGIGDTMASIVGYKYGVLRW---------SK-TGKKTIEGTAAGITSVLAACSI 490 (541)
Q Consensus 439 i~~aGIL~LgiGDs~ASIVG~rfGr~Kw---------~~-~~~KTlEGSlAfflss~l~~~l 490 (541)
..+++-+...-.|++||=+|+.+||+.. |+ ++.-|++|++|.++++++...+
T Consensus 122 ~~~~~SvAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~ 183 (247)
T COG1836 122 GGFAASVATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALL 183 (247)
T ss_pred HHHHHHHHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHH
Confidence 3456667788999999999999998653 22 4468999999999998876543
No 14
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=87.19 E-value=7.2 Score=39.56 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhcccchhhhhhhcccccc--------C-C-CCCcceehhHHHHHHHHHHHHHH
Q 009178 439 APFAGILSLGIGDTMASIVGYKYGVLRW--------S-K-TGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 439 i~~aGIL~LgiGDs~ASIVG~rfGr~Kw--------~-~-~~~KTlEGSlAfflss~l~~~ll 491 (541)
..+.|-+.-+-+||+||=+|+.++++.+ | + ++.=|++||+|.+.+++++....
T Consensus 108 ~~~~~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~ 170 (226)
T PF01940_consen 108 LAFLGSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVA 170 (226)
T ss_pred HHHHHHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999876443 1 1 44579999999999988776554
No 15
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=68.30 E-value=12 Score=36.64 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=23.1
Q ss_pred hhhcc-ccccCCCCCcceehhHHHHHHHHHHHHHH
Q 009178 458 GYKYG-VLRWSKTGKKTIEGTAAGITSVLAACSIL 491 (541)
Q Consensus 458 G~rfG-r~Kw~~~~~KTlEGSlAfflss~l~~~ll 491 (541)
|++|. .+|+. +++||+||++++.+.+.++..+.
T Consensus 34 G~~~~DGrRil-GdgKTwrG~i~gvl~g~l~g~i~ 67 (175)
T PF01864_consen 34 GKTFRDGRRIL-GDGKTWRGFIGGVLAGTLVGIIQ 67 (175)
T ss_pred CCccCCCCEec-CCCCeEEeeeHHHHHHHHHHHHH
Confidence 56653 24454 45899999999998887665543
No 16
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.02 E-value=49 Score=28.03 Aligned_cols=25 Identities=32% Similarity=0.930 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhhHHHHHhhcccchHHHH
Q 009178 273 SSLGFILVVIIPSWMQIVQDFHVHPLLWV 301 (541)
Q Consensus 273 ~~~~~v~~~~~p~~~~~~~~~~~~P~~Wl 301 (541)
.+.++..++.+|.|-. .++||..|+
T Consensus 43 ~g~~~~~lv~vP~Wp~----y~r~p~~W~ 67 (76)
T PF06645_consen 43 AGVVLTLLVVVPPWPF----YNRHPLKWL 67 (76)
T ss_pred HHHHHHHhheeCCcHh----hcCCcccCC
Confidence 4444455678999975 478999996
No 17
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=34.46 E-value=4.5e+02 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.417 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHhhhhhcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 009178 344 LRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVWR 388 (541)
Q Consensus 344 ~RKifHilavl~f~P~i~~dp~fl~lal~v~laiFillE~lR~~~ 388 (541)
+|++.|+..+..+.+.+++++ .....+...+......|..|..+
T Consensus 2 ~Ri~t~~i~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~e~~~~~~ 45 (259)
T PF01148_consen 2 QRIITAIILIPIFILLLFLGP-WYFLLLVAVIIFLGFWELFRLFR 45 (259)
T ss_pred EeHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc
Confidence 489999888777777766665 32333334444555667776543
No 18
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=31.25 E-value=6e+02 Score=26.12 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhhh---HHHHHHHHHHHHHHHhhhhhHHHHHhhc
Q 009178 236 LFPLLLKYALHLSEGYFNKRYSEARRSNEI---RTSLLFFSSLGFILVVIIPSWMQIVQDF 293 (541)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~f~~~~~~v~~~~~p~~~~~~~~~ 293 (541)
.+|+. ..++|++..+.-+++||+.-.. .....|+.+....-.+++|.-.++..+.
T Consensus 93 a~P~i---~yqiw~Fi~PgLy~~Er~~~~~~~~~s~~lF~~G~~f~y~vvlP~~~~Fl~~f 150 (249)
T CHL00182 93 SSPFI---IYQIILFILPGLTKKERKIILPLLISSLVLFGLGLIFAYFVLVPAALNFFINY 150 (249)
T ss_pred HHHHH---HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555 4577877767666555443322 3445666666655556788655554443
No 19
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=28.77 E-value=86 Score=28.03 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=24.8
Q ss_pred HHHHHHhhcccchhhhhhhccccccCCCCCcc
Q 009178 442 AGILSLGIGDTMASIVGYKYGVLRWSKTGKKT 473 (541)
Q Consensus 442 aGIL~LgiGDs~ASIVG~rfGr~Kw~~~~~KT 473 (541)
......|++++++.++|+++|+.|+.+- +|.
T Consensus 41 ~~~~~~g~~~a~~~~~s~~~G~~~~~~~-~~~ 71 (162)
T PF01554_consen 41 LFMLIFGLATALQILISQNIGAGDYKRA-KKV 71 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSTTTC-CCH
T ss_pred Hhhhcccccccccceeeccccccccccc-ccc
Confidence 4557779999999999999999998543 444
No 20
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=24.44 E-value=39 Score=37.82 Aligned_cols=89 Identities=9% Similarity=-0.011 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHhhheeecc--cccccccccCCCCCcccccccccchHHHHHHHHHHHHhh-chhhhhhhhhhhh-----
Q 009178 34 GLNLAILSLFALFLDIRLDD--SAALSRFKTRPGASSGILLGAVTLPTVMISKLIQLTRAY-SLQQIELQELEHM----- 105 (541)
Q Consensus 34 ~~~~~~l~~~a~~~~~~~~~--~~~~~~~~~r~~a~sg~~lg~~~~p~~m~~~l~~~~~~~-~~~~~~~~~~~y~----- 105 (541)
-.....++.++++.+.+||+ +...+.+|+|-.||++.. |+.|+.++.+..+.= -.+-|..=...|.
T Consensus 42 ~fs~~~i~~~~~~~~~~~~~~~~~~~a~~~~l~~a~~~v~------~~~~v~~~~~~~~~~aa~~s~c~f~i~~s~~~~~ 115 (510)
T KOG2468|consen 42 SFSATAIALRTNFGPVEWLQLLSIVTADISFLQIAVPVVC------LIMVVQILLKYWQHGAAYKSLCFFLIIYSLTGPL 115 (510)
T ss_pred HHHHHHHhhhccccchhhhhhhhhhhhhhhhhhhcchhhh------HHHHHHHHHHHHhccccccchhHHHHHHHHHHHH
Confidence 34667889999999999999 999999999999999999 888888888877643 0122222223322
Q ss_pred -hHHHHHHHhhHH--HHHHHHHHHHh
Q 009178 106 -TMQYWATSASCF--GVLIFLCLVVL 128 (541)
Q Consensus 106 -~~~~~~~~~~~~--~~~~~~~~~~~ 128 (541)
+-..|..+.+|. ++++|.....+
T Consensus 116 v~~l~sl~s~~~v~~~la~~v~~s~~ 141 (510)
T KOG2468|consen 116 VVSLLSLLSSTVVNTGLAGFVLNSYR 141 (510)
T ss_pred HHHHHHhcccchHHHHHHHHhhHHHH
Confidence 334555565433 36666655554
No 21
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=23.66 E-value=8.2e+02 Score=25.21 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=32.7
Q ss_pred HHHHH-HHHHHHHHHHHhhhhcccccchhhhhhhhh---HHHHHHHHHHHHHHHhhhhhHHHHHhhc
Q 009178 231 VLGLL-LFPLLLKYALHLSEGYFNKRYSEARRSNEI---RTSLLFFSSLGFILVVIIPSWMQIVQDF 293 (541)
Q Consensus 231 ~~g~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~~f~~~~~~v~~~~~p~~~~~~~~~ 293 (541)
.+|++ .+|+. ..++|++..+.-++.||+.-.. .....|+.+......+++|.-.++..+.
T Consensus 77 ~~g~~la~P~i---lyqiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~f 140 (258)
T PRK10921 77 MVSLILSAPVI---LYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLAKT 140 (258)
T ss_pred HHHHHHHHHHH---HHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33443 34555 4577777666666555433322 3345666666555556778655554443
No 22
>COG3714 Predicted membrane protein [Function unknown]
Probab=23.61 E-value=3.2e+02 Score=27.77 Aligned_cols=100 Identities=24% Similarity=0.303 Sum_probs=56.9
Q ss_pred HHHHHhhcCCCCCCchhHHHHHHHhhcccchhhhhhhccccccCCCCCcceehhHHHHHHHHHHHHHHHHhhhhcCccch
Q 009178 424 ALPIWMSSGFNDRPLAPFAGILSLGIGDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACSILLPLLASTGYIFT 503 (541)
Q Consensus 424 alplwl~~~~~~~~li~~aGIL~LgiGDs~ASIVG~rfGr~Kw~~~~~KTlEGSlAfflss~l~~~lll~ll~~~g~~~~ 503 (541)
++-.|..+-..++.+...+|+..=..||.+=..=| .++=..|-++|+++-+.-..++ +...+- ..
T Consensus 40 a~~a~~~p~~~~~~~lI~agLalsa~GD~LL~~p~-----------~~~f~~Gl~aFLlaHl~y~~~~---~~~~~~-~~ 104 (212)
T COG3714 40 ALAAWQAPMLSGRRWLIVAGLALSALGDALLLLPG-----------RLAFVAGLIAFLLAHLLYIGAL---LRSART-LS 104 (212)
T ss_pred HHHHHhccccCCccHHHHHHHHHHHHHHHHHhCcc-----------hHHHHHHHHHHHHHHHHHHHHH---HHhccc-cc
Confidence 44455544223344555688888899998844322 1345567777777765433222 122111 11
Q ss_pred hhHH-HHHHHHHHHHHHHhcCCCCCceecHHHHHHh
Q 009178 504 EHWF-SLILAVTVSSLLEAYTTQLDNAFIPLIFYSH 538 (541)
Q Consensus 504 ~~~~-~lll~aivatLlEa~s~~~DNL~IPL~~~~l 538 (541)
..|. .....++.+.++-.+.++.||+.+|+..|+.
T Consensus 105 ~~~~~~~~l~vv~~v~l~~lw~~lg~L~~PV~~yi~ 140 (212)
T COG3714 105 LWWPLPAALLVVGAVLLALLWPRLGELRIPVAIYIA 140 (212)
T ss_pred ccchHHHHHHHHHHHHHHHHhccccCccccHHHHHH
Confidence 1222 3333444444566669999999999999875
No 23
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=21.73 E-value=2.8e+02 Score=30.79 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=14.0
Q ss_pred CCCcccccccccchHHHHH
Q 009178 65 GASSGILLGAVTLPTVMIS 83 (541)
Q Consensus 65 ~a~sg~~lg~~~~p~~m~~ 83 (541)
+++-|+++|.+.+=+..++
T Consensus 237 ~a~~Glf~Gil~lv~tii~ 255 (441)
T PF03189_consen 237 GASKGLFLGILVLVATIIV 255 (441)
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 7899999999655554444
Done!