Query 009178
Match_columns 541
No_of_seqs 249 out of 841
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 20:34:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4a_A TATC, SEC-independent p 18.9 6.4E+02 0.022 24.4 15.1 55 236-293 76-133 (249)
2 1lg4_A Doppel protein, prion-l 6.2 53 0.0018 28.9 -2.1 26 85-111 36-61 (129)
3 3u85_B Histone-lysine N-methyl 5.2 2.2E+02 0.0074 17.8 0.8 11 59-69 4-14 (21)
4 3g36_A Protein DPY-30 homolog; 4.5 5.8E+02 0.02 19.4 3.0 25 284-308 23-47 (55)
5 1hek_A GAG polyprotein, core p 4.0 5.6E+02 0.019 22.3 2.8 33 82-118 63-95 (131)
6 1etr_L Epsilon-thrombin; serin 3.4 2.5E+02 0.0087 21.1 0.2 9 199-207 12-20 (49)
7 2acm_A Mucin-1; auto-catalytic 3.3 2.5E+02 0.0085 22.2 -0.0 24 42-65 42-66 (66)
8 3bei_A Prothrombin; serine pro 3.2 1.2E+02 0.0042 22.4 -1.7 6 201-206 9-14 (44)
9 1b4b_A Arginine repressor; cor 3.2 2.3E+02 0.0078 22.2 -0.4 22 49-70 7-28 (71)
10 1xxa_A ARGR, arginine represso 2.9 2.9E+02 0.0099 22.1 -0.0 21 50-70 10-30 (78)
No 1
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=18.95 E-value=6.4e+02 Score=24.43 Aligned_cols=55 Identities=16% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhh---hHHHHHHHHHHHHHHHhhhhhHHHHHhhc
Q 009178 236 LFPLLLKYALHLSEGYFNKRYSEARRSNE---IRTSLLFFSSLGFILVVIIPSWMQIVQDF 293 (541)
Q Consensus 236 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~f~~~~~~v~~~~~p~~~~~~~~~ 293 (541)
.+|+. ..++|++..+.-+++||+.-. ......|+.+....-.+++|.-.++..+.
T Consensus 76 a~P~i---lyQiw~Fi~PgLy~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~ 133 (249)
T 4b4a_A 76 ASPVI---LYQFWRFIEPALYSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGL 133 (249)
T ss_dssp HHHHH---HHHHHHHHTTTTSCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCS
T ss_pred HHHHH---HHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555 467887766666655544332 23445666666655556788666655444
No 2
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=6.16 E-value=53 Score=28.88 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=20.3
Q ss_pred HHHHHHhhchhhhhhhhhhhhhHHHHH
Q 009178 85 LIQLTRAYSLQQIELQELEHMTMQYWA 111 (541)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~y~~~~~~~ 111 (541)
+|...|++.++ .++|+|.|-|--||-
T Consensus 36 Fir~GrKLdID-fGaEgNrYYeanYwq 61 (129)
T 1lg4_A 36 FIKQGRKLDID-FGAEGNRYYEANYWQ 61 (129)
T ss_dssp CCCCSCCCSCC-CCHHHHHHHHHHGGG
T ss_pred HHhCCceeeee-cccccchhhhhcccc
Confidence 56666776655 668999999999995
No 3
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=5.16 E-value=2.2e+02 Score=17.80 Aligned_cols=11 Identities=55% Similarity=1.201 Sum_probs=7.9
Q ss_pred ccccCCCCCcc
Q 009178 59 RFKTRPGASSG 69 (541)
Q Consensus 59 ~~~~r~~a~sg 69 (541)
+|.-|||.++|
T Consensus 4 rfparpg~s~~ 14 (21)
T 3u85_B 4 RFPARPGTTGG 14 (26)
T ss_pred ccccCCCcccC
Confidence 57779987654
No 4
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=4.46 E-value=5.8e+02 Score=19.36 Aligned_cols=25 Identities=4% Similarity=0.300 Sum_probs=16.7
Q ss_pred hhHHHHHhhcccchHHHHHHHHhcC
Q 009178 284 PSWMQIVQDFHVHPLLWVLTFVFSE 308 (541)
Q Consensus 284 p~~~~~~~~~~~~P~~Wl~~fi~~~ 308 (541)
+.+......=-.||+.|+-+|++.+
T Consensus 23 ~GL~~lak~rP~DPi~~LA~~Ll~~ 47 (55)
T 3g36_A 23 QGMAVLAKERPPNPIEFLASYLLKN 47 (55)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 3333333333579999999999864
No 5
>1hek_A GAG polyprotein, core protein P15; viral protein, membrane-binding switching; 2.8A {Equine infectious anemia virus} SCOP: a.61.1.5
Probab=3.97 E-value=5.6e+02 Score=22.34 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhHHHHHHHhhHHH
Q 009178 82 ISKLIQLTRAYSLQQIELQELEHMTMQYWATSASCFG 118 (541)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 118 (541)
+.||++=.. +...-+|-+-+|+-.|+++|.-|+
T Consensus 63 viPLLeDV~----qtLsGqEreAFekTWWaI~AvKmG 95 (131)
T 1hek_A 63 VIPLLEDVT----QTLSGQEREAFERTWWAISAVKMG 95 (131)
T ss_dssp HHHHHHHHH----TTCCSTHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHH----HHccchHHHHHHHHHHHHHHHHhc
Confidence 456666554 334457788899999999987665
No 6
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=3.44 E-value=2.5e+02 Score=21.15 Aligned_cols=9 Identities=22% Similarity=0.202 Sum_probs=4.6
Q ss_pred CCCCCcchH
Q 009178 199 PSCASIGEL 207 (541)
Q Consensus 199 P~cft~gEa 207 (541)
|++|+-|||
T Consensus 12 pktFG~GE~ 20 (49)
T 1etr_L 12 EKTFGAGEA 20 (49)
T ss_dssp --CCBSCCT
T ss_pred CcCCCCccc
Confidence 666666665
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=3.32 E-value=2.5e+02 Score=22.20 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=17.5
Q ss_pred HHHHhhheee-cccccccccccCCC
Q 009178 42 LFALFLDIRL-DDSAALSRFKTRPG 65 (541)
Q Consensus 42 ~~a~~~~~~~-~~~~~~~~~~~r~~ 65 (541)
+.++++||.- +.=-++...|+|||
T Consensus 42 is~L~lqIykq~~FLgl~~IkFRpG 66 (66)
T 2acm_A 42 ISEMFLQIYKQGGFLGLSNIKFRPG 66 (66)
T ss_dssp HHHHHHHHCTTTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHccCCeeeeeEEEecCC
Confidence 5567777765 34667888999997
No 8
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=3.24 E-value=1.2e+02 Score=22.37 Aligned_cols=6 Identities=33% Similarity=0.335 Sum_probs=2.2
Q ss_pred CCCcch
Q 009178 201 CASIGE 206 (541)
Q Consensus 201 cft~gE 206 (541)
+|+-||
T Consensus 9 tFG~GE 14 (44)
T 3bei_A 9 TFGSGE 14 (44)
T ss_dssp HHCSCS
T ss_pred cccCcc
Confidence 333333
No 9
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=3.16 E-value=2.3e+02 Score=22.22 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.5
Q ss_pred eeecccccccccccCCCCCccc
Q 009178 49 IRLDDSAALSRFKTRPGASSGI 70 (541)
Q Consensus 49 ~~~~~~~~~~~~~~r~~a~sg~ 70 (541)
.+.|++...-+.||+||+.+.+
T Consensus 7 ~si~~~~n~vVikT~pG~A~~v 28 (71)
T 1b4b_A 7 IKLDGTGNLLVLRTLPGNAHAI 28 (71)
T ss_dssp EEEEEETTEEEEEESTTCHHHH
T ss_pred EEEEecCCEEEEEeCCCcHHHH
Confidence 3566777888899999986654
No 10
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=2.90 E-value=2.9e+02 Score=22.09 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=15.9
Q ss_pred eecccccccccccCCCCCccc
Q 009178 50 RLDDSAALSRFKTRPGASSGI 70 (541)
Q Consensus 50 ~~~~~~~~~~~~~r~~a~sg~ 70 (541)
+.|++...-+.||+||+.+.+
T Consensus 10 si~~~~n~vVikT~PG~A~~v 30 (78)
T 1xxa_A 10 DIDYNDAVVVIHTSPGAAQLI 30 (78)
T ss_dssp EEEECSSCEEEEESTTTHHHH
T ss_pred EEEecCCEEEEEeCCCcHHHH
Confidence 556777888899999886544
Done!