Query 009178
Match_columns 541
No_of_seqs 249 out of 841
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 20:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009178.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/009178hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m56d_ f.23.8.1 (D:) Bacteria 9.0 40 0.0029 23.0 0.5 26 458-484 1-26 (42)
2 d1heka_ a.61.1.5 (A:) EIAV mat 5.0 2.1E+02 0.015 22.4 2.8 33 82-118 63-95 (116)
3 d2vv5a3 f.34.1.1 (A:27-112) Me 3.2 7.6E+02 0.055 17.3 7.8 19 432-450 64-82 (86)
4 d1qled_ f.23.8.1 (D:) Bacteria 3.0 3E+02 0.022 18.5 1.9 13 470-482 13-25 (43)
5 d1ppjc1 f.32.1.1 (C:261-379) M 2.5 3.9E+02 0.028 21.1 2.4 47 16-65 14-60 (119)
6 d2p5ma1 d.74.2.1 (A:79-149) C- 2.2 1.7E+02 0.012 21.3 -0.4 22 49-70 7-28 (71)
7 d2p3ra1 c.55.1.4 (A:2-253) Gly 2.0 1.9E+02 0.014 25.0 -0.3 14 446-459 239-252 (252)
8 d1koza_ g.3.6.2 (A:) Grammotox 2.0 3.1E+02 0.023 17.2 0.8 10 136-145 25-34 (36)
9 d1b4ba_ d.74.2.1 (A:) C-termin 2.0 1.9E+02 0.014 21.0 -0.4 22 49-70 7-28 (71)
10 d1gjsa_ a.8.1.2 (A:) IgG bindi 1.8 2E+02 0.014 20.9 -0.4 11 469-479 45-55 (65)
No 1
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.97 E-value=40 Score=22.99 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=16.1
Q ss_pred hhhccccccCCCCCcceehhHHHHHHH
Q 009178 458 GYKYGVLRWSKTGKKTIEGTAAGITSV 484 (541)
Q Consensus 458 G~rfGr~Kw~~~~~KTlEGSlAfflss 484 (541)
|.|-|..... .++||.+|-+.+..=+
T Consensus 1 ~HkHG~MDi~-vQEKTF~gFik~~t~~ 26 (42)
T d1m56d_ 1 GHVAGSMDIT-QQEKTFAGFVRMVTWA 26 (42)
T ss_dssp CCCTTCSCCH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCccchH-HHHHHHHHHHHHHHHH
Confidence 3445555443 3479999988876533
No 2
>d1heka_ a.61.1.5 (A:) EIAV matrix antigen {Equine infectious anemia virus, EIAV [TaxId: 11665]}
Probab=4.97 E-value=2.1e+02 Score=22.44 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhchhhhhhhhhhhhhHHHHHHHhhHHH
Q 009178 82 ISKLIQLTRAYSLQQIELQELEHMTMQYWATSASCFG 118 (541)
Q Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 118 (541)
+.||+.=.. +...-+|.+-+|+-.|+++|.-|+
T Consensus 63 iiplledv~----qtlsgqereafertwwaisavkmg 95 (116)
T d1heka_ 63 VIPLLEDVT----QTLSGQEREAFERTWWAISAVKMG 95 (116)
T ss_dssp HHHHHHHHH----TTCCSTHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHH----HHccchhHHHHHHHHHHHHHHHhc
Confidence 346665544 333457788899999999976554
No 3
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=3.22 E-value=7.6e+02 Score=17.28 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=12.8
Q ss_pred CCCCCCchhHHHHHHHhhc
Q 009178 432 GFNDRPLAPFAGILSLGIG 450 (541)
Q Consensus 432 ~~~~~~li~~aGIL~LgiG 450 (541)
+.+-.++.+..|+..+++|
T Consensus 64 Gi~~t~l~a~~G~~gvaiG 82 (86)
T d2vv5a3 64 GVQTASVIAVLGAAGLVVG 82 (86)
T ss_dssp TCCSTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 3455667777888777766
No 4
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=3.02 E-value=3e+02 Score=18.54 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=10.0
Q ss_pred CCcceehhHHHHH
Q 009178 470 GKKTIEGTAAGIT 482 (541)
Q Consensus 470 ~~KTlEGSlAffl 482 (541)
++||.+|-+.+..
T Consensus 13 QEkTF~gFi~~~t 25 (43)
T d1qled_ 13 QQATFAGFIKGAT 25 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999887764
No 5
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.49 E-value=3.9e+02 Score=21.13 Aligned_cols=47 Identities=28% Similarity=0.259 Sum_probs=32.2
Q ss_pred hhhHHHHHhhccccccccchhHHHHHHHHHhhheeecccccccccccCCC
Q 009178 16 VLIVCRVLYSLPLSLLCPGLNLAILSLFALFLDIRLDDSAALSRFKTRPG 65 (541)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~r~~ 65 (541)
.++.=.+|-|+|-.+. |+...+.|+.-+++---.|++. .+..|+||-
T Consensus 14 FL~~YaiLRsipnK~g--Gvl~m~~si~il~~lP~l~~~~-~~s~~~~~~ 60 (119)
T d1ppjc1 14 FLFAYAILRSIPNKLG--GVLALAFSILILALIPLLHTSK-QRSMMFRPL 60 (119)
T ss_dssp GHHHHHHHHTCSSHHH--HHHHHHHHHHGGGTHHHHCCCS-SSSSTTCHH
T ss_pred HHHHHHHHhcCCchhH--HHHHHHHHHHHHHHHHHHhccc-CCCCeeChH
Confidence 3455678889998883 7777777777777665566653 345788873
No 6
>d2p5ma1 d.74.2.1 (A:79-149) C-terminal domain of arginine repressor {Bacillus subtilis [TaxId: 1423]}
Probab=2.21 E-value=1.7e+02 Score=21.33 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=16.7
Q ss_pred eeecccccccccccCCCCCccc
Q 009178 49 IRLDDSAALSRFKTRPGASSGI 70 (541)
Q Consensus 49 ~~~~~~~~~~~~~~r~~a~sg~ 70 (541)
++.|+++..-..||+||..+.+
T Consensus 7 vsi~~~~~~vvikT~pG~A~~v 28 (71)
T d2p5ma1 7 VKIDSASHMIVLKTMPGNAQAI 28 (71)
T ss_dssp EEEEEETTEEEEEESTTCHHHH
T ss_pred EEEEecCCEEEEEcCCChHHHH
Confidence 3567788888899999876643
No 7
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli [TaxId: 562]}
Probab=2.04 E-value=1.9e+02 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=11.6
Q ss_pred HHhhcccchhhhhh
Q 009178 446 SLGIGDTMASIVGY 459 (541)
Q Consensus 446 ~LgiGDs~ASIVG~ 459 (541)
+.|.||..||++|+
T Consensus 239 ~~g~gD~~aa~~G~ 252 (252)
T d2p3ra1 239 SGIAGDQQAALFGQ 252 (252)
T ss_dssp EEEEEHHHHHHHHT
T ss_pred EEEchHHHHHHhCC
Confidence 34679999999995
No 8
>d1koza_ g.3.6.2 (A:) Grammotoxin SIA, GrTx {Tarantula (Grammostola spatulata) [TaxId: 432528]}
Probab=1.98 E-value=3.1e+02 Score=17.22 Aligned_cols=10 Identities=50% Similarity=1.355 Sum_probs=8.3
Q ss_pred CCCCcceeec
Q 009178 136 FPRSFSVWDA 145 (541)
Q Consensus 136 ~~~~~~~~~~ 145 (541)
-|+|-|+|.+
T Consensus 25 wprnicvwdg 34 (36)
T d1koza_ 25 WPRNICVWDG 34 (36)
T ss_dssp SSSSBCEECC
T ss_pred CCceeEeecC
Confidence 6899999875
No 9
>d1b4ba_ d.74.2.1 (A:) C-terminal domain of arginine repressor {Bacillus stearothermophilus [TaxId: 1422]}
Probab=1.95 E-value=1.9e+02 Score=20.95 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=16.8
Q ss_pred eeecccccccccccCCCCCccc
Q 009178 49 IRLDDSAALSRFKTRPGASSGI 70 (541)
Q Consensus 49 ~~~~~~~~~~~~~~r~~a~sg~ 70 (541)
++.|+++..-..||+||..+.+
T Consensus 7 vsv~~~~~~vvikT~pG~A~~v 28 (71)
T d1b4ba_ 7 IKLDGTGNLLVLRTLPGNAHAI 28 (71)
T ss_dssp EEEEEETTEEEEEESTTCHHHH
T ss_pred EEEeecCCEEEEEcCCChHHHH
Confidence 3567788888899999887654
No 10
>d1gjsa_ a.8.1.2 (A:) IgG binding protein G {Streptococcus sp., group G [TaxId: 1306]}
Probab=1.84 E-value=2e+02 Score=20.90 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=7.7
Q ss_pred CCCcceehhHH
Q 009178 469 TGKKTIEGTAA 479 (541)
Q Consensus 469 ~~~KTlEGSlA 479 (541)
|+-||+||--+
T Consensus 45 N~AKTVEGV~a 55 (65)
T d1gjsa_ 45 NNAKTVEGVKA 55 (65)
T ss_dssp HTCCSHHHHHH
T ss_pred hccchHHHHHH
Confidence 45799999543
Done!