RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 009178
         (541 letters)



>gnl|CDD|223248 COG0170, SEC59, Dolichol kinase [Lipid metabolism].
          Length = 216

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 18/207 (8%)

Query: 335 KNSKIERILLRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVFLVLEIMRVWRIWPLGQ 394
            +      + RK  H+   L+F+   I + KF  + F   L + L+LE   ++R+   G 
Sbjct: 11  LSLDTRLEVRRKLLHISGGLLFLL-YILRDKFAIILFLLILLIILLLEF-ELFRLLIPGL 68

Query: 395 ------FIHQFMTAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGFNDRPLAPFAGILSLG 448
                  + + ++     R+ +   +      +G  L   +            AGIL L 
Sbjct: 69  EGKVTLLLSELLSLIEREREKNGPGLGGIIYFIGGGLLASLLFPIE----VAIAGILVLA 124

Query: 449 IGDTMASIVGYKYGVLRWSKTGKKTIEGTAAGITSVLAACSILLPLL-ASTGYIFTEHWF 507
           +GD +ASI+G +YG  +      K++EG+ A   +      +L   L A  G I      
Sbjct: 125 LGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVLLVLYGYLGAFVGAIGA---- 180

Query: 508 SLILAVTVSSLLEAYTTQLDNAFIPLI 534
            L+L V  ++         DN  IPL 
Sbjct: 181 -LVLEVGATATSLELLPLDDNLTIPLF 206


>gnl|CDD|216329 pfam01148, CTP_transf_1, Cytidylyltransferase family.  The members
           of this family are integral membrane protein
           cytidylyltransferases. The family includes phosphatidate
           cytidylyltransferase EC:2.7.7.41 as well as Sec59 from
           yeast. Sec59 is a dolichol kinase EC:2.7.1.108.
          Length = 259

 Score = 34.3 bits (79), Expect = 0.13
 Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 14/198 (7%)

Query: 319 WVSLIFASVLRFYNISKNSKIERILLRKYYHLLAVLMFVPALIFQPKFLHLAFGAALAVF 378
            + L+  + +    + +  ++ R+       LL   + +   +     ++     AL   
Sbjct: 23  LIFLLLVAAIIILALYELIRLLRLKFSSRLLLLTRGLGLIFYLLGLLLVYGEGLLALFGL 82

Query: 379 LVLEIMRVWRIWPLGQFIHQFMTAFTDHRDSDLLIVSHFSLLLGCALPIWMSSGFNDRPL 438
           ++L I  +W +       H+  +         LL + +  L L   L     +      L
Sbjct: 83  VLLVIPVLWLLVLPVLAYHRVSST--------LLPLFYVGLFLSLLLI----TNPFFGLL 130

Query: 439 APFAGILSLGIGDTMASIVGYKYGV-LRWSKTG-KKTIEGTAAGITSVLAACSILLPLLA 496
                IL +   D  A  VG  +G      K    KT EG   G  + +    +   LL 
Sbjct: 131 WALLLILVVWASDIGAYFVGKAFGKHKLAPKISPNKTWEGFLGGFVAAVLVGLLFSLLLG 190

Query: 497 STGYIFTEHWFSLILAVT 514
                       L+ ++ 
Sbjct: 191 PYPSPLHALLLGLLASLV 208


>gnl|CDD|184774 PRK14635, PRK14635, hypothetical protein; Provisional.
          Length = 162

 Score = 30.3 bits (68), Expect = 1.5
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 68  SGILLGAVTLPTVMISKLIQLTRAYSLQQIELQELEHMT 106
           S IL   + LP  + S  +     +SL ++ L  LEH  
Sbjct: 9   SEILDRVLALPVKLYSLKVNQRPNHSLIEVVLDNLEHPY 47


>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
          Length = 547

 Score = 30.7 bits (70), Expect = 2.4
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 341 RILLRKYYHLLAVLMFVPALIFQPKFLHLAFG-AALAVFLV 380
           RI ++ YY   A+L+   A+      L   F   +L++FLV
Sbjct: 4   RIHIKYYYLAGALLLLYLAVTGPSILLTFLFAWISLSLFLV 44


>gnl|CDD|236773 PRK10838, spr, outer membrane lipoprotein; Provisional.
          Length = 190

 Score = 29.7 bits (67), Expect = 2.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)

Query: 247 LSEGYFNKRYSEARR 261
           ++E Y+ KRY+EARR
Sbjct: 169 MNEPYWKKRYNEARR 183


>gnl|CDD|234405 TIGR03936, sam_1_link_chp, radical SAM-linked protein.  This model
           describes an uncharacterized protein encoded adjacent
           to, or as a fusion protein with, an uncharacterized
           radical SAM protein.
          Length = 209

 Score = 29.1 bits (66), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 424 ALPIWMSSGFNDRPLAPFAGILSLGI 449
            LP+  S GFN  P   FA  L +G+
Sbjct: 32  GLPVAFSQGFNPHPKISFAPALPVGV 57


>gnl|CDD|226857 COG4449, COG4449, Predicted protease of the Abi (CAAX) family
           [General function prediction only].
          Length = 827

 Score = 29.2 bits (65), Expect = 6.9
 Identities = 20/93 (21%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 110 WATSASCFGVLIFLCLVVLSTPNTKRF-PRSFSVW--------DATLSIFCVASYAVTCC 160
           W T  +  G+++F+    L   N   F PR   V+           L + C  +Y VT  
Sbjct: 742 WVTLGAATGLVLFVLYHPL---NALTFYPRGAPVFFRPIFLLLTGLLGLGCTVTYRVTGS 798

Query: 161 VSLAAISHTGSNTVLKLMWELYHGLVAVMLIQR 193
           +    + H      + ++W  + G V+ +  Q+
Sbjct: 799 LWPIVLLH----WAVVVVWLTWLGGVSKLSHQK 827


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.330    0.142    0.436 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,905,759
Number of extensions: 2826677
Number of successful extensions: 4146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4105
Number of HSP's successfully gapped: 170
Length of query: 541
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 439
Effective length of database: 6,413,494
Effective search space: 2815523866
Effective search space used: 2815523866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 61 (27.2 bits)