BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009180
(541 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 351 LFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPEN--- 407
F+ NL V V S L +L E + E ++Y + Y W + A+L ++
Sbjct: 415 FFILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYIS-YMVSDWRDLTANLMDSVFI 473
Query: 408 ---PTAEIPIPQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDF 464
Q++ FR+FN FED + + +SDP L+ +K + + P+Y F
Sbjct: 474 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF 533
Query: 465 YEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDL 498
Y +Y +D +++ PD+L L+ L
Sbjct: 534 YSRY-----KDSFKNPRKHIKYTPDELTTVLNQL 562
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 351 LFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPEN--- 407
F+ NL V V S L +L E + E ++Y + Y W + A+L ++
Sbjct: 414 FFILMNLTLVEQIVEKSELNLMLAGEGHSRLERLKKRYIS-YMVSDWRDLTANLMDSVFI 472
Query: 408 ---PTAEIPIPQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDF 464
Q++ FR+FN FED + + +SDP L+ +K + + P+Y F
Sbjct: 473 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERF 532
Query: 465 YEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDL 498
Y +Y +D +++ PD+L L+ L
Sbjct: 533 YSRY-----KDSFKNPRKHIKYTPDELTTVLNQL 561
>pdb|2B7M|A Chain A, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|B Chain B, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|C Chain C, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
pdb|2B7M|D Chain D, Crystal Structure Of The S. Cerevisiae Exocyst Component
Exo70p
Length = 566
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 351 LFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPEN--- 407
F+ NL V V S L L E + E ++Y + Y W + A+L ++
Sbjct: 417 FFILXNLTLVEQIVEKSELNLXLAGEGHSRLERLKKRYIS-YXVSDWRDLTANLXDSVFI 475
Query: 408 ---PTAEIPIPQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDF 464
Q++ FR+FN FED + + +SDP L+ +K + + P Y F
Sbjct: 476 DSSGKKSKDKEQIKEKFRKFNEGFEDLVSKTKQYKLSDPSLKVTLKSEIISLVXPXYERF 535
Query: 465 YEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDL 498
Y +Y +D +++ PD+L L+ L
Sbjct: 536 YSRY-----KDSFKNPRKHIKYTPDELTTVLNQL 564
>pdb|2PFT|A Chain A, The Crystal Structure Of Mouse Exo70 Reveals Unique
Features Of The Mammalian Exocyst
Length = 571
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 80/408 (19%), Positives = 157/408 (38%), Gaps = 64/408 (15%)
Query: 125 DVLEIKIKNWLRAVRTAVKTVFAGERILCDTVFSGPSSASIRVSCFSQIVKEGALDLLVF 184
D+L+++ ++ V VK + R+L + + P + F ++++ L++
Sbjct: 191 DMLDVETDAYIHCVSAFVKLAQSEYRLLMEII---PEHHQKK--TFDSLIQDALDGLMLE 245
Query: 185 PENVAKCKKTP------EKMFRTLDLYEAISDLSPDIASIFSFESTSAVRSQAANSLIRL 238
EN+ + + + + P+ + + T+A LI
Sbjct: 246 GENIVSAARKAIIRHDFSTVLTVFPILRHLKQTKPEFDQVL--QGTAASTKNKLPGLITS 303
Query: 239 GEAV-RTMLADFEAAIHKDTSKT-PVPGGG-VHPLTRYVMNYIAFLADYSGSLAEIDAEW 295
E + L DF I D K +P G VH LT + ++ L D+ + + A
Sbjct: 304 METIGAKALEDFADNIKNDPDKEYNMPKDGTVHELTSNAILFLQQLLDFQETAGAMLASQ 363
Query: 296 PLTSNSPLPEAYFGXXXXXXXXXXXXAVRLAWLILVVLCKLDG--------KAELYKEVA 347
+S++ + F L+ +CK+ G K+++Y++ A
Sbjct: 364 ETSSSATSYSSEFSKR----------------LLSTYICKVLGNLQLNLLSKSKVYEDPA 407
Query: 348 QSYLFLANNLQYVVVKVRSSNLKFLLGEEWIV---KHEAKVRQYAANYERMGWDKVFASL 404
S +FL NN Y++ + S L L+ + + Q Y+R W KV +
Sbjct: 408 LSAIFLHNNYNYILKSLEKSELIQLVAVTQKTAERSYREHIEQQIQTYQR-SWLKVTDYI 466
Query: 405 PENPTAEIPIPQ------------VRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKIS 452
E +P+ Q ++ F+ FN E+ CK W + D + RD+I+ +
Sbjct: 467 AEK---NLPVFQPGVKLRDKERQMIKERFKGFNDGLEELCKIQKVWAIPDTEQRDKIRQA 523
Query: 453 LAKRIAPVYRDFYEKY-RVRVLRDPSTGNEPLVRFAPDDLGNHLSDLF 499
+ Y F +Y V ++P E +++ + +G+ + LF
Sbjct: 524 QKDIVKETYGAFLHRYGSVPFTKNP----EKYIKYRVEQVGDMIDRLF 567
>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
pdb|2C0D|B Chain B, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From
Plasmodium Falciparum
Length = 221
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 205 YEAISDLSPDIASIFSFESTSAVRSQAANSLIRLGEAVRTMLADFEAAIHKDTSKTPVP 263
Y + D S + +F + VR Q N L +G V+ +L ++ IH DTS P
Sbjct: 136 YNVLYDNSFALRGLFIIDKNGCVRHQTVNDL-PIGRNVQEVLRTIDSIIHVDTSGEVCP 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,300,805
Number of Sequences: 62578
Number of extensions: 541544
Number of successful extensions: 1151
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 6
length of query: 541
length of database: 14,973,337
effective HSP length: 104
effective length of query: 437
effective length of database: 8,465,225
effective search space: 3699303325
effective search space used: 3699303325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)