Query 009180
Match_columns 541
No_of_seqs 207 out of 495
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 21:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2344 Exocyst component prot 100.0 7E-113 2E-117 937.4 53.3 492 1-503 118-616 (623)
2 PF03081 Exo70: Exo70 exocyst 100.0 8.4E-80 1.8E-84 649.4 24.4 360 131-498 1-371 (371)
3 PF06419 COG6: Conserved oligo 98.9 7.5E-06 1.6E-10 92.2 37.3 362 85-495 205-618 (618)
4 KOG3758 Uncharacterized conser 97.9 0.047 1E-06 59.9 32.9 374 67-495 220-651 (655)
5 PF04129 Vps52: Vps52 / Sac2 f 97.4 0.022 4.7E-07 63.1 21.1 208 145-392 299-507 (508)
6 KOG1961 Vacuolar sorting prote 96.7 0.35 7.6E-06 53.1 22.3 91 250-367 459-551 (683)
7 PF09763 Sec3_C: Exocyst compl 96.1 0.67 1.5E-05 53.5 21.5 213 230-466 438-693 (701)
8 PF10191 COG7: Golgi complex c 93.1 16 0.00035 42.7 22.6 200 72-292 201-445 (766)
9 KOG2148 Exocyst protein Sec3 [ 83.9 83 0.0018 35.7 19.6 209 231-469 605-839 (867)
10 KOG1916 Nuclear protein, conta 70.2 34 0.00075 40.0 10.6 50 413-465 1013-1064(1283)
11 PF08385 DHC_N1: Dynein heavy 62.5 2.6E+02 0.0055 31.2 17.2 90 193-292 326-419 (579)
12 PF07393 Sec10: Exocyst comple 61.2 2.8E+02 0.006 32.2 16.4 135 71-219 128-275 (710)
13 TIGR02553 SipD_IpaD_SspD type 53.1 82 0.0018 32.4 8.9 62 373-436 117-178 (308)
14 KOG3821 Heparin sulfate cell s 46.0 11 0.00025 41.4 1.7 72 414-500 97-168 (563)
15 PHA01746 hypothetical protein 42.6 9.7 0.00021 32.9 0.4 22 461-490 76-97 (131)
16 PF15264 TSSC4: Tumour suppres 40.3 9.4 0.0002 33.7 0.0 19 474-492 55-73 (115)
17 COG2733 Predicted membrane pro 38.6 2.9E+02 0.0064 29.6 10.5 89 389-497 291-383 (415)
18 KOG3960 Myogenic helix-loop-he 37.2 1E+02 0.0023 30.8 6.6 34 418-453 127-162 (284)
19 PF10815 ComZ: ComZ; InterPro 35.9 22 0.00049 26.7 1.4 27 1-28 7-33 (56)
20 KOG4344 Uncharacterized conser 32.9 1.5E+02 0.0033 33.6 7.6 68 349-434 967-1038(1121)
21 PF15335 CAAP1: Caspase activi 28.0 1.1E+02 0.0024 24.1 4.1 34 91-129 5-38 (64)
22 KOG2047 mRNA splicing factor [ 25.1 44 0.00096 37.8 2.0 95 390-499 64-180 (835)
23 COG0286 HsdM Type I restrictio 24.9 9.7E+02 0.021 26.5 12.5 41 455-501 144-184 (489)
24 PF11880 DUF3400: Domain of un 24.9 58 0.0013 23.7 1.9 15 371-385 21-35 (45)
25 PF08069 Ribosomal_S13_N: Ribo 23.3 70 0.0015 24.9 2.2 25 475-499 17-41 (60)
26 COG4907 Predicted membrane pro 22.2 2.3E+02 0.005 31.0 6.5 49 419-467 489-538 (595)
27 PF02384 N6_Mtase: N-6 DNA Met 20.3 1.2E+02 0.0027 30.9 4.1 55 456-521 5-59 (311)
28 PF01153 Glypican: Glypican; 20.1 72 0.0016 36.0 2.5 71 415-500 90-160 (557)
No 1
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-113 Score=937.40 Aligned_cols=492 Identities=50% Similarity=0.831 Sum_probs=443.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCccCCCCccccccccccccCC--CCc-cccccccccccc-CCcccccccCCCHHHHHHHHH
Q 009180 1 MQTAMKRLEREFYQMLKINGEYLDHESVSVSSSRASRASF--SDL-EDYEVSETESRI-SDDAISEMERVSTAAMADLKA 76 (541)
Q Consensus 1 ~~~am~~Le~eF~~lL~~~~~~~~p~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~L~~ 76 (541)
||+||.+||+||++||.+++.+++|+.+..+.+.+..+-. .+. .+.......++. .+..+..++.+|++++.+|+.
T Consensus 118 ~~~am~~le~EF~~il~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~dLk~ 197 (623)
T KOG2344|consen 118 LQIAMSRLEKEFRQILENNREELDPERLSVRLRSSLNSKDEEASLNSDSKYSALSDEESFGDDEIEPDLFPPDVMTDLKA 197 (623)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHhhhhcccccccccccccccccCcccccccccccccCceeeccCCCchhHHHHHH
Confidence 5899999999999999999999999999888766543200 000 010011111122 344455689999999999999
Q ss_pred HHHHHHhCCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhcccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 009180 77 IADCMISAGYGKECARIYKIIRKSVVDEALYHLGVERLNFNVIQKMDWDVLEIKIKNWLRAVRTAVKTVFAGERILCDTV 156 (541)
Q Consensus 77 Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~w~~le~ki~~wi~~~~~av~~l~~~E~~L~~~v 156 (541)
||++|+++||.++|+++|..+|+++++++|.+||+++++++++++|+|++++.+|++||++++++++.||++|+.||++|
T Consensus 198 Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~E~~Lcd~I 277 (623)
T KOG2344|consen 198 IAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEGEKKLCDQI 277 (623)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhHHHHHHHHHHHhhchhhhhhccCCChhHHHHHHHHHHHHHhhhHHHHhhccCCchHHHHHHHHHHHH
Q 009180 157 FSGPSSASIRVSCFSQIVKEGALDLLVFPENVAKCKKTPEKMFRTLDLYEAISDLSPDIASIFSFESTSAVRSQAANSLI 236 (541)
Q Consensus 157 f~~~~~~~~~~~~F~~i~~~~~~~ll~f~e~va~~kr~peklf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~ 236 (541)
|+. .++....||.+|++.++++||+|+++|++++|.|||+|++||||+++.+++|+++.+|++..++++|.++..+++
T Consensus 278 f~~--~~~~~~~cF~eI~~~~~~~ll~F~eava~~kr~pEklf~iLd~y~~i~~l~p~ie~lF~~~~~s~vr~~~~~~~~ 355 (623)
T KOG2344|consen 278 FSD--LESIVESCFPEIVKEAALQLLSFPEAVAISKRSPEKLFKLLDLYETIVELRPDIERLFSDASCSEVRSQALSLLK 355 (623)
T ss_pred cCc--cchHHHHHHHHHHHHHHHHhhccchheeeccCCHHHHHHHHHHHHHHHHHHHHHHHhccCccCHHHHHHHHHHHH
Confidence 998 554322899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCC
Q 009180 237 RLGEAVRTMLADFEAAIHKDTSKTPVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPLPEAYFGSPESSDS 316 (541)
Q Consensus 237 ~L~~~~~~~f~ef~~~I~~~~s~~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~~~~~~~~~~~ 316 (541)
+|+++++.+|.||++.|++|++++|++||||||||+||||||+.|++|+++|.++|.+|+.. +.++.+ ...+..
T Consensus 356 rL~~~~~~~~~efe~~I~~d~sk~pv~gG~VHpLTryvmnyl~~L~dy~~tL~~il~~~~~~--~~~~~~----~~~~~~ 429 (623)
T KOG2344|consen 356 RLGEGVRSIFVEFESAIRKDSSKTPVPGGGVHPLTRYVMNYLNFLADYKDTLEQLLMEDPVD--TSLPKS----ESEDES 429 (623)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHHhccccc--cccCcc----cccccc
Confidence 99999999999999999999999999999999999999999999999999999999987511 111111 001112
Q ss_pred CCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhccchhhhhchHHHHHHHHHHHHHHHHHHHhc
Q 009180 317 ISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYAANYERMG 396 (541)
Q Consensus 317 ~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S~L~~lLG~~w~~~~~~~v~~~~~~Y~~~s 396 (541)
..++++.+++|||.+|++||++||+.|+|++|+|||||||++||+++|++++|+.+||++|+++|..+++||++.|++++
T Consensus 430 ~~s~l~~~~~~ii~~L~~nLd~Ks~~Y~D~aL~~lFlmNN~~yiv~kvkss~L~~llGd~wl~kh~~~~~qy~~~Y~r~s 509 (623)
T KOG2344|consen 430 SNSLLAVHIARIILALECNLDTKSKLYKDPALSYLFLMNNLHYIVQKVKSSELRLLLGDDWLRKHEEKLRQYATSYERES 509 (623)
T ss_pred cccHHHHHHHHHHHHHHhhhHHHHhhccchhhHHHHHHhhHHHHHHHHhcchHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred HHHHhccCCCCCCC---CCChhHHHHHHHHHHHHHHHHHHhccceeccChHHHHHHHHHHHHHHhHHHHHHHHHhccccc
Q 009180 397 WDKVFASLPENPTA---EIPIPQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVL 473 (541)
Q Consensus 397 W~~vl~~L~~~~~~---~~~r~~iKerfk~FN~~FeE~~~~Q~~w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~ 473 (541)
|++|+++|.+.+++ +++|+.+||||++||++|||+|++|++|+||||+||++||.+|+++|+|+|++||+||+..
T Consensus 510 W~~vl~~L~~~~s~~~~~~~~~~~Kerfk~FN~~FeEv~k~Qs~wvV~D~~Lr~eLk~si~~~v~P~Yr~F~~r~~~~-- 587 (623)
T KOG2344|consen 510 WGKVLSLLTDEGSSSGGKKSKEVLKERFKLFNEQFEEVYKKQSQWVVPDPKLREELKISISEKVVPAYRSFYGRYRNS-- 587 (623)
T ss_pred HHHHHHHhhccccccccccCHHHHHHHHHHHHHHHHHHHHhhCceecccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 99999999998743 3889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCccccCHHHHHHHHHhhhCCCC
Q 009180 474 RDPSTGNEPLVRFAPDDLGNHLSDLFHGTI 503 (541)
Q Consensus 474 ~~~~k~~~KYiKYtpe~le~~L~~LF~g~~ 503 (541)
+ .+||++|||||||||||++|++||+|++
T Consensus 588 ~-~~k~~~kyikYtpedlE~~L~dLF~g~~ 616 (623)
T KOG2344|consen 588 V-SGKNPEKYIKYTPEDLENYLSDLFEGSP 616 (623)
T ss_pred c-CCCCCCcccccCHHHHHHHHHHHhCCCC
Confidence 4 4999999999999999999999999987
No 2
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=100.00 E-value=8.4e-80 Score=649.39 Aligned_cols=360 Identities=38% Similarity=0.667 Sum_probs=313.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhhchhhhhh---ccCCChhHHHHHHHHHHH
Q 009180 131 IKNWLRAVRTAVKTVFAGERILCDTVFSGPSSASIRVSCFSQIVKEGALDLLVFPENVA---KCKKTPEKMFRTLDLYEA 207 (541)
Q Consensus 131 i~~wi~~~~~av~~l~~~E~~L~~~vf~~~~~~~~~~~~F~~i~~~~~~~ll~f~e~va---~~kr~peklf~lLdmye~ 207 (541)
|++||+++++++..|+++|++||++||+. ..+.+..||.+|++.++..|++|+++|+ ...++|+++|.+||||++
T Consensus 1 ~~~wi~~~~~~~~~l~~~E~~L~~~vf~~--~~~~~~~~f~~i~~~~~~~ll~~~~~v~~~~~~~~~~~~lf~ll~~~~~ 78 (371)
T PF03081_consen 1 IKRWIQAYKVALKKLFQSERRLCDQVFPE--SSSIADECFAEIAKPPLLQLLNFADAVASVRNSQRSPEKLFELLDMYEA 78 (371)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHHHHHHSSC--CCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHTCCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCChHHHHHHHHHHHH
Confidence 57999999999999999999999999998 5556889999999999999999999999 888999999999999999
Q ss_pred HHhhhHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCccCCCCccchhHHHHHHHHHHHHhcH
Q 009180 208 ISDLSPDIASIFSFESTSAVRSQAANSLIRLGEAVRTMLADFEAAIHK--DTSKTPVPGGGVHPLTRYVMNYIAFLADYS 285 (541)
Q Consensus 208 L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~f~ef~~~I~~--~~s~~~~~dG~VH~lT~~vmnyl~~L~~y~ 285 (541)
|.+++|+++.+|.+.++..++.++.+++++|+++++++|.+|.+.|+. ++.+.+|+||+|||+|++|||||+.|++|+
T Consensus 79 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~e~~~~i~~~~~~~~~~p~dg~Vh~lT~~vm~yl~~L~~y~ 158 (371)
T PF03081_consen 79 LSELLPDLDSLFSGESCESIRQEFDELLKKLREAIRKILEEFEESIKNDSDSSSSVPSDGGVHPLTSYVMNYLKRLAEYR 158 (371)
T ss_dssp HHHHHCCCHHCTCC-S-HHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGCS-TTS---HHHHHHHHHHHHHHCTH
T ss_pred HHHHhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 888889999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhh
Q 009180 286 GSLAEIDAEWPLTSNSPLPEAYFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVR 365 (541)
Q Consensus 286 ~~L~~iL~~~~~~~~~~~p~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~ 365 (541)
++|+.+|.........+.+......+ ..+...++++.+|.++|++|+.||++|||.|+|++|++||||||+|||.++++
T Consensus 159 ~~l~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~i~~ii~~L~~~Le~ks~~y~d~~l~~iFLlNN~~yI~~~~~ 237 (371)
T PF03081_consen 159 DTLESILQSDGDGNWLSESGPPSESS-SSTDSQSSLSSYIADIISALESNLEAKSKSYKDPALRYIFLLNNYHYILKKLK 237 (371)
T ss_dssp HHHHHCCCTT-GGGGS-SS--GGGS----CCHHHHHHHHHHHHHHHHHHHHHHHHCCHCTHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHhccccccccccccccccc-cccCccchHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhh
Confidence 99999997532211000000000000 00124468999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCC------CCCCCChhHHHHHHHHHHHHHHHHHHhcccee
Q 009180 366 SSNLKFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPEN------PTAEIPIPQVRNCFRRFNLSFEDTCKRHSSWI 439 (541)
Q Consensus 366 ~S~L~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~------~~~~~~r~~iKerfk~FN~~FeE~~~~Q~~w~ 439 (541)
+|+|..+||++|++++..++++|++.|++++|+||+++|.++ +.+.++|+.+|+||++||++|||+|+.|+.|+
T Consensus 238 ~s~l~~~lg~~~~~~~~~~~~~~~~~Y~~~sW~~v~~~L~~~~~~~~~~~~~~~~~~~ke~f~~Fn~~fee~~~~q~~~~ 317 (371)
T PF03081_consen 238 RSELKDLLGDDWEQRLSSKIEQYIKSYLRSSWGPVLSCLSDDSSSSGGKLSSKERELLKEKFKKFNSAFEEIYKAQKTWK 317 (371)
T ss_dssp TSHHHHCCTTCHHHHHHHHHHHHHHHHHCHHHHHHHCTCCHHCC-T-SSS-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred hcchhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCccHHHHHHHHHHHHHHHHHHHHcCccee
Confidence 999999999999999999999999999998899999999983 23457899999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHHHhh
Q 009180 440 VSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDL 498 (541)
Q Consensus 440 VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~L 498 (541)
||||+||++||++|+++|+|+|++||+||+.. .| ||+|||||||++||++|++|
T Consensus 318 vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~---~~--~~~Kyikyt~~~le~~l~~L 371 (371)
T PF03081_consen 318 VPDPELREELRREIKEKVVPAYRRFYERYRNS---QF--NPEKYIKYTPEDLENMLNEL 371 (371)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCC---SS--SHCCC-SS-HHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cc--CCCCCCccCHHHHHHHHHcC
Confidence 99999999999999999999999999999997 66 99999999999999999986
No 3
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=98.93 E-value=7.5e-06 Score=92.25 Aligned_cols=362 Identities=14% Similarity=0.175 Sum_probs=201.4
Q ss_pred CCchHHHHHHHHhhHHHH-HHHHHhcCccccch-h-hhcccChHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhccC
Q 009180 85 GYGKECARIYKIIRKSVV-DEALYHLGVERLNF-N-VIQKMDWDVL---EIKIKNWLRAVRTAVKTVFAGERILCDTVFS 158 (541)
Q Consensus 85 g~~~ec~~~Y~~~R~~~l-~~sL~~L~~e~ls~-~-~v~k~~w~~l---e~ki~~wi~~~~~av~~l~~~E~~L~~~vf~ 158 (541)
-+.+.|++.|+..|+..+ ++.+..|....-+. . ..-.+...++ =+.|=.||+.. .++|+.++..+|.
T Consensus 205 ~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~-------~a~E~E~l~~Lf~ 277 (618)
T PF06419_consen 205 VLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQA-------IASEREFLESLFK 277 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHH-------hhhHHHHHHHHhc
Confidence 367899999999998877 55566674432110 0 0000111111 13355687775 5799999999998
Q ss_pred CCCCc----------------hhhhhhHHHHHHHHHHHhhc-hhhhhhccCCCh---hHHHHHHHHHHHHHhhhHHHHhh
Q 009180 159 GPSSA----------------SIRVSCFSQIVKEGALDLLV-FPENVAKCKKTP---EKMFRTLDLYEAISDLSPDIASI 218 (541)
Q Consensus 159 ~~~~~----------------~~~~~~F~~i~~~~~~~ll~-f~e~va~~kr~p---eklf~lLdmye~L~~l~p~~~~l 218 (541)
.+... ..-..+...|..+ +..-|. =.|-|-.....| -+++.+|..|..+ |..+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~lld~i~~~-l~rplk~RvEQvi~se~~~i~~yki~~LL~fY~~~------~~k~ 350 (618)
T PF06419_consen 278 FDEDEIAEGSSSGFDSNPWSEELINELLDRILEG-LCRPLKIRVEQVISSEEDPITLYKIANLLSFYQMT------FSKL 350 (618)
T ss_pred ccccccccccccccccccchHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHH------HHHH
Confidence 63211 0111111111111 000011 111111122233 5677777777654 2334
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCccCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhc
Q 009180 219 FSFESTSAVRSQAANSLIRLGEAVRTMLAD----FEAAIHKDTSKTPVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAE 294 (541)
Q Consensus 219 f~~~~~~~vr~~~~~~l~~L~~~~~~~f~e----f~~~I~~~~s~~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~ 294 (541)
.+..+ .+...+..|.+.+.+.|.. ....+.......++.|=...+-....++-|+.+ +..
T Consensus 351 i~~~s------~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~~~~~~DL~PP~~l~d~l~~L~~i----------l~~ 414 (618)
T PF06419_consen 351 IGEDS------SLIETLKELQDLAQKKFFSSLRDHVAKLLRSAPEPPPADLSPPEWLIDFLSLLREI----------LDV 414 (618)
T ss_pred cCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHHHHH----------HHH
Confidence 33322 2455566666666555443 344444442334566766655444444444333 332
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhccchhhhhc
Q 009180 295 WPLTSNSPLPEAYFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSSNLKFLLG 374 (541)
Q Consensus 295 ~~~~~~~~~p~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S~L~~lLG 374 (541)
.... . .+.++......+...+..+|+-+....+.-|....++.-..||++|.+.+|...+..-+. .
T Consensus 415 ~~~s---~-------~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl~~i~s~L~~~~~----~ 480 (618)
T PF06419_consen 415 YDSS---L-------SPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCLDLIQSTLSPFEF----T 480 (618)
T ss_pred hhcc---c-------CCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhHHHHHHHccChHh----H
Confidence 1110 0 011111112568888899999999999888887777766899999999999998876321 1
Q ss_pred hHHHHHHHHHHHHH--------HHHHH-HhcHHHHhccCC----CCC-------CCCCChhHHHHHHHHHHHHHHHH-HH
Q 009180 375 EEWIVKHEAKVRQY--------AANYE-RMGWDKVFASLP----ENP-------TAEIPIPQVRNCFRRFNLSFEDT-CK 433 (541)
Q Consensus 375 ~~w~~~~~~~v~~~--------~~~Y~-~~sW~~vl~~L~----~~~-------~~~~~r~~iKerfk~FN~~FeE~-~~ 433 (541)
.+|+.+...+++.+ ...++ +..-+.+...+. +.. .+..+.+.++.-..+|+.-+--+ .-
T Consensus 481 ~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sGL~~~~~~l~~i~~~~~~~~pls~~p~~~~~~l~~a~~kld~fL~sa~~d 560 (618)
T PF06419_consen 481 SERVEELQDQIDAHVDTLVEEQASFLLERSGLGDLYNALNMIFFDYDMYGPLSENPGMDPDSLSNALQKLDDFLPSALTD 560 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHhhccCCcccCCcccCccCCHHHHHHHHHHHHHHHcccchh
Confidence 24444444444333 23332 333455555554 211 23456676666666666554332 12
Q ss_pred hccc-eeccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHH
Q 009180 434 RHSS-WIVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHL 495 (541)
Q Consensus 434 ~Q~~-w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L 495 (541)
.|.. -.+.+|.+|+.++......++-+|..||+...+. ..+- +.-..+||++|..+|
T Consensus 561 ~~~~L~~L~Sp~l~~~I~~~a~~~f~~~Y~~v~~~v~d~---~n~y--~sl~~~tpeeI~~LL 618 (618)
T PF06419_consen 561 AQPNLFKLQSPKLRDDIRERAFERFCKAYEKVYEAVMDP---DNGY--ESLFPRTPEEIRTLL 618 (618)
T ss_pred hhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCh---hccc--ccccCCCHHHHhhcC
Confidence 2333 4478999999999999999999999999998764 1111 135789999998764
No 4
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.047 Score=59.87 Aligned_cols=374 Identities=17% Similarity=0.216 Sum_probs=184.6
Q ss_pred CHHHHHHHHHHHHHHHhCC-CchHHHHHHHHhhHHHH-HHHHHhc--Cccc-cc--hhhhcccChHHHHHHHHhHHHHHH
Q 009180 67 STAAMADLKAIADCMISAG-YGKECARIYKIIRKSVV-DEALYHL--GVER-LN--FNVIQKMDWDVLEIKIKNWLRAVR 139 (541)
Q Consensus 67 ~~~~i~~L~~Ia~~m~~~g-~~~ec~~~Y~~~R~~~l-~~sL~~L--~~e~-ls--~~~v~k~~w~~le~ki~~wi~~~~ 139 (541)
++++-+-|++-..++...- .-+.|++-|+..|+..| .+.+..| |-.. .. |+ ++.-+.--.=+.+=.||+..
T Consensus 220 ~~E~~~il~kA~~~L~~~p~lfk~~ide~~~aR~~~L~~~Fisaltrg~~~~~PrpIe-l~ahDPlRyIGDmLawlHq~- 297 (655)
T KOG3758|consen 220 SQEVSPILRKAFVFLSSRPVLFKYLIDEVGTARSQSLLRQFISALTRGGPGGMPRPIE-LHAHDPLRYIGDMLAWLHQA- 297 (655)
T ss_pred chhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCcc-ccCCChHHHHHHHHHHHHHH-
Confidence 3456666777667766543 45789999999998655 7778877 3211 11 11 11111101113355677765
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCchhh-----hhhHHHHHHHHHHHhhc-hhhhhh-----------ccCCCh---hHHH
Q 009180 140 TAVKTVFAGERILCDTVFSGPSSASIR-----VSCFSQIVKEGALDLLV-FPENVA-----------KCKKTP---EKMF 199 (541)
Q Consensus 140 ~av~~l~~~E~~L~~~vf~~~~~~~~~-----~~~F~~i~~~~~~~ll~-f~e~va-----------~~kr~p---eklf 199 (541)
.++|+++...+|...+-+ .+ ..-...++.+....||. ..+.|+ ..-+++ -|+-
T Consensus 298 ------ia~Ekelv~aLfd~~~~d-~q~n~~~~en~~~vl~~~dn~lld~i~~gvcrPlkvRvEqil~~e~~~Iilfki~ 370 (655)
T KOG3758|consen 298 ------IANEKELVEALFDFKKED-LQDNISISENLPNVLGGIDNKLLDDILEGVCRPLKVRVEQILQAEKNAIILFKIS 370 (655)
T ss_pred ------hhhHHHHHHHHhcchhhh-hccCCCchhHhHHHHhchhhhHHHHHHHHhcchhHHHHHHHHHcCcCceeehhHH
Confidence 578999888888321000 00 00112222222333332 222222 122233 3444
Q ss_pred HHHHHHHHHHhhhHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCC--ccCCCCccchhHHH-HH
Q 009180 200 RTLDLYEAISDLSPDIASIFSFESTSAVRSQAANSLIRLGEAVRTMLADF-EAAIHKDTSK--TPVPGGGVHPLTRY-VM 275 (541)
Q Consensus 200 ~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~f~ef-~~~I~~~~s~--~~~~dG~VH~lT~~-vm 275 (541)
.+|..|... |..+..+++ .+...++.|...++.+|-.. .+.+++-..+ .||.|=...|-.+. ++
T Consensus 371 nlL~FY~~~------fs~~v~~ds------~l~~~l~~L~d~s~q~~~~~l~~~~~~l~~~~l~p~~DLlPpp~v~~~l~ 438 (655)
T KOG3758|consen 371 NLLKFYRVT------FSKLVQDDS------ALLNTLKELEDISKQRFIGYLEDHVKKLMRKELSPPSDLLPPPAVREYLN 438 (655)
T ss_pred HHHHHHHHH------HHHHhcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHH
Confidence 555555332 333333322 24566777777777665544 3344332111 23336555554444 44
Q ss_pred HHHHHHHhcHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhh-h--hhhhhHHHH
Q 009180 276 NYIAFLADYSGSLAEIDAEWPLTSNSPLPEAYFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAEL-Y--KEVAQSYLF 352 (541)
Q Consensus 276 nyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~-y--kd~aL~~iF 352 (541)
++...+.-|..++.... + ....+...+..+++-|...-..-+.. . +|.+- -+|
T Consensus 439 ll~ei~~~~~a~~~~~d--------------------~---~~~df~~l~s~vldpilq~c~~sae~~lp~~d~~~-~if 494 (655)
T KOG3758|consen 439 LLVEIFEIYEASHTAED--------------------G---EQLDFKLLLSCVLDPILQMCQKSAEAHLPTSDKGS-LIF 494 (655)
T ss_pred HHHHHHHHhhhhhcccc--------------------c---cccchHHHHHHHHHHHHHHHHHHHHhcCCCccccc-cee
Confidence 44444444433222111 1 11223333333344443333333311 1 22221 599
Q ss_pred HHhhHHHHHHHhhccchhhhhchHHHHHHHHHHHHHH--------HHHH-HhcHHHHhccCCCCC--------CCCCChh
Q 009180 353 LANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQYA--------ANYE-RMGWDKVFASLPENP--------TAEIPIP 415 (541)
Q Consensus 353 LmNN~~yI~~~v~~S~L~~lLG~~w~~~~~~~v~~~~--------~~Y~-~~sW~~vl~~L~~~~--------~~~~~r~ 415 (541)
|+|..+.|...+-.=+. + +.-+.....+++.|. ..|+ +..-+.+.+.+.... .++.+-.
T Consensus 495 ~iNcL~~iks~l~~~e~---~-~~~~e~lq~~ie~~~d~L~t~q~s~ll~~~GLs~~~q~~~~~~p~~~~ls~~~~l~s~ 570 (655)
T KOG3758|consen 495 MINCLDLIKSRLARYEF---L-DERVEMLQAKIEAYLDTLVTLQVSFLLENTGLSDLYQKFNMITPEDSVLSLDPDLESA 570 (655)
T ss_pred hhhhHHHHHhHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHhcCcchhhhhccccccHH
Confidence 99999999888765321 1 111122223333332 2222 223334443333211 1233444
Q ss_pred HHHHHHHHHHHHHHHHHHhccce------eccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCC-CCccccCH
Q 009180 416 QVRNCFRRFNLSFEDTCKRHSSW------IVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGN-EPLVRFAP 488 (541)
Q Consensus 416 ~iKerfk~FN~~FeE~~~~Q~~w------~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~-~KYiKYtp 488 (541)
.+++...+|-.- ...-... .+.-|.+|++++......++-+|..+|++-.+. ...-|.| +.-++++|
T Consensus 571 ~~~~~i~~fd~~----l~~~~~~~lpq~q~l~sp~~r~~i~kr~~~~~~~aY~~i~~al~~~--~ngy~dPve~ll~~~~ 644 (655)
T KOG3758|consen 571 LLDEAIVKFDMF----LHAPLNLTLPQLQQLTSPMVRDEICKRSAKKFVLAYEIIYKALINP--YNGYKDPVESLLHFSP 644 (655)
T ss_pred HHHHHHHHHHHH----hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--CCCCCChHHHHhcCCH
Confidence 455555444331 2222223 344788999999999999999999999998876 2334667 66778888
Q ss_pred HHHHHHH
Q 009180 489 DDLGNHL 495 (541)
Q Consensus 489 e~le~~L 495 (541)
|++...+
T Consensus 645 dq~~tll 651 (655)
T KOG3758|consen 645 DQVDTLL 651 (655)
T ss_pred HHhcccc
Confidence 8876654
No 5
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.35 E-value=0.022 Score=63.07 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=120.3
Q ss_pred HHHHHHHHHhhccCCCCCchhhhhhHHHHHHHHHHHhhchhhhhhccCCChhHHHHHHHHHHHHHhhhHHHHhhccCCch
Q 009180 145 VFAGERILCDTVFSGPSSASIRVSCFSQIVKEGALDLLVFPENVAKCKKTPEKMFRTLDLYEAISDLSPDIASIFSFEST 224 (541)
Q Consensus 145 l~~~E~~L~~~vf~~~~~~~~~~~~F~~i~~~~~~~ll~f~e~va~~kr~peklf~lLdmye~L~~l~p~~~~lf~~~~~ 224 (541)
-..+|+..|.+.|.. .+.....+|.+|-.+++..+..|-+.......+ ++.+|=|........-.+.. .+ .
T Consensus 299 n~t~Ey~F~~~FF~~--~~~~~~~if~~If~~t~~~~~~~~~~~l~~~~D---~iglll~Irl~~~~~~~~~~--R~--i 369 (508)
T PF04129_consen 299 NATSEYLFISEFFSG--SGDAAEDIFNQIFEPTFSLLQEFTEQLLSNSYD---AIGLLLCIRLNQRYQFEMQR--RR--I 369 (508)
T ss_pred hhhHHHHHHHHHHcc--cccchHHHHHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHh--CC--C
Confidence 357899999999987 443455678888777777777776653222223 34444343333333333322 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCC
Q 009180 225 SAVRSQAANSLIRLGEAVRTMLADFEAAIHKDTSK-TPVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPL 303 (541)
Q Consensus 225 ~~vr~~~~~~l~~L~~~~~~~f~ef~~~I~~~~s~-~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~ 303 (541)
..+..-+..+...|=-.-..++..=.+.|++-..+ ..+.+.+.|++|+.--.|+..|. .+-...
T Consensus 370 p~ld~y~~~~~~~LWprF~~i~d~nieSlk~~~~~~~~~~~~~PH~itrRyaef~~sll-------~L~~~~-------- 434 (508)
T PF04129_consen 370 PVLDSYLNSLLMLLWPRFQKIMDANIESLKKADPKKLGSIDTRPHYITRRYAEFLSSLL-------KLSSEH-------- 434 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCccCChHHHHHHHHHHHHHH-------HHhccC--------
Confidence 22333444444444444444555556777764443 34478899999887555554433 332111
Q ss_pred CCcccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhccchhhhhchHHHHHHHH
Q 009180 304 PEAYFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEA 383 (541)
Q Consensus 304 p~~~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S~L~~lLG~~w~~~~~~ 383 (541)
+...+...+..+-..+..-|..-|+..+++..+.+||.||+.+|+..+...... .+.+ ...+.+
T Consensus 435 -------------~~~~~~~~l~~L~~~~~~ll~~~s~~~~~~k~~~iFLiNNY~lIl~iL~~~~~~--~~~e-~~~~~~ 498 (508)
T PF04129_consen 435 -------------PDEQLEPSLNRLRREVEDLLTRLSKEFKDRKEREIFLINNYDLILSILSERTGK--LSKE-QKHFFE 498 (508)
T ss_pred -------------chhhHHHHHHHHHHHHHHHHHHHHHhcccccccceehHHHHHHHHHHHHhcccc--chHH-HHHHHH
Confidence 111255556666666666666667778888889999999999999999875322 1111 233445
Q ss_pred HHHHHHHHH
Q 009180 384 KVRQYAANY 392 (541)
Q Consensus 384 ~v~~~~~~Y 392 (541)
.++.+...|
T Consensus 499 ~l~~~~~~f 507 (508)
T PF04129_consen 499 LLQARTEEF 507 (508)
T ss_pred HHHHHHhhc
Confidence 555555544
No 6
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.73 E-value=0.35 Score=53.05 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=56.4
Q ss_pred HHHHhcCCCCccC--CCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCChHHHHHHH
Q 009180 250 EAAIHKDTSKTPV--PGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPLPEAYFGSPESSDSISSPIAVRLAW 327 (541)
Q Consensus 250 ~~~I~~~~s~~~~--~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~~~~~~~~~~~~~s~l~~~i~~ 327 (541)
.+.+++...++.+ +|.+.|++|+-.-.++..+. .+=... + +.-++...+..
T Consensus 459 ~eSlR~~di~~~~~~~d~rPHyitrRyAEf~ss~~-------~l~v~~---------------~-----~~~~~~~ll~~ 511 (683)
T KOG1961|consen 459 CESLRKADITTLWEKLDTRPHYITRRYAEFLSSFL-------MLNVTY---------------G-----NEQDVERLLER 511 (683)
T ss_pred HHHHHhcChhhcccccCCCchHHHHHHHHHHHHHH-------HHHHhc---------------c-----ccchHHHHHHH
Confidence 3444443333333 79999999997655554433 221111 1 01113444445
Q ss_pred HHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhcc
Q 009180 328 LILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSS 367 (541)
Q Consensus 328 ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S 367 (541)
+....++-+..-+|.++++--+.+||.||+.+|..-+..-
T Consensus 512 l~~~ve~fl~rmak~~~~~K~q~vFLiNNYdlil~vL~e~ 551 (683)
T KOG1961|consen 512 LQMEVESFLLRMAKLFPTRKQQLVFLINNYDLILGVLMEA 551 (683)
T ss_pred HHHHHHHHHHHHHHhcCCcccceeeeeccHHHHHHHHHhh
Confidence 5555556666778888888889999999999999877653
No 7
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=96.07 E-value=0.67 Score=53.51 Aligned_cols=213 Identities=14% Similarity=0.161 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhcC-CCCccCC-CCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCCCCc
Q 009180 230 QAANSLIRLGEAVRTMLADFE-AAIHKD-TSKTPVP-GGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPLPEA 306 (541)
Q Consensus 230 ~~~~~l~~L~~~~~~~f~ef~-~~I~~~-~s~~~~~-dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~ 306 (541)
-+..++.++...+++.|..|. +.|+.- .++.... -.||-| |++.+..|-..++.++......
T Consensus 438 fl~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~r~GVl~-------~i~~fp~f~~~~E~~~~~~~~~-------- 502 (701)
T PF09763_consen 438 FLSNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKKRKGVLP-------FIKKFPEFVKRVESMFSGAERA-------- 502 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccch-------HHHHHHHHHHHHHHHHcccccc--------
Confidence 467888889999999999994 455432 2222222 235544 7777777777888887643210
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhh-----------hhhhHHHHHHhhHHHHHHHhhccchhhhhch
Q 009180 307 YFGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYK-----------EVAQSYLFLANNLQYVVVKVRSSNLKFLLGE 375 (541)
Q Consensus 307 ~~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~yk-----------d~aL~~iFLmNN~~yI~~~v~~S~L~~lLG~ 375 (541)
......+......++.++...|+..++.-. ...-.+|.++=|+||+...+..-.....| +
T Consensus 503 --------~~~r~~vd~aY~kl~~a~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l-~ 573 (701)
T PF09763_consen 503 --------REDRSLVDKAYEKLVRAMFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVL-E 573 (701)
T ss_pred --------chHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhH-H
Confidence 012235788888999999999999997533 23558999999999999999875542233 4
Q ss_pred HHHHHHHHHHHHHHHHHHH----hcHHHHhccCCCC-------C------CCCCChhHHHHHHHH-----HHHHHHHHHH
Q 009180 376 EWIVKHEAKVRQYAANYER----MGWDKVFASLPEN-------P------TAEIPIPQVRNCFRR-----FNLSFEDTCK 433 (541)
Q Consensus 376 ~w~~~~~~~v~~~~~~Y~~----~sW~~vl~~L~~~-------~------~~~~~r~~iKerfk~-----FN~~FeE~~~ 433 (541)
.|.++-....+++...|.+ -.++++....... + ...-+|+.+|.-++. .-...+.+|+
T Consensus 574 ~~~~~A~~~~~~~~~~Y~~~~l~r~~~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~k 653 (701)
T PF09763_consen 574 EFRKEAKQIYDEHLEAYVTFLLRRPFGKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYK 653 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 6666666666666666655 3445554443211 1 123467777766655 4567888887
Q ss_pred h-ccce--e----ccChHHHHHHHHHHHHHHhHHHHHHHH
Q 009180 434 R-HSSW--I----VSDPKLRDEIKISLAKRIAPVYRDFYE 466 (541)
Q Consensus 434 ~-Q~~w--~----VpD~~LR~~Lr~~i~~~VvPaY~~F~~ 466 (541)
+ ++.+ . ..+..|-+.+=.++.+..+-.|.+|++
T Consensus 654 rveKHf~~~~~~~~~~~~Ll~~vW~~~q~~~i~~~~~l~~ 693 (701)
T PF09763_consen 654 RVEKHFSRDADDPSFEEDLLQVVWSAMQEEFIRQYERLET 693 (701)
T ss_pred HHHHHcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 4444 1 234556666666666666655555543
No 8
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=93.08 E-value=16 Score=42.72 Aligned_cols=200 Identities=18% Similarity=0.280 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHhhHHHHHHHHHhcCccccchhhhcccChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 009180 72 ADLKAIADCMISAGYGKECARIYKIIRKSVVDEALYHLGVERLNFNVIQKMDWDVLEIKIKNWLRAVRTAVKTVFAGERI 151 (541)
Q Consensus 72 ~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~w~~le~ki~~wi~~~~~av~~l~~~E~~ 151 (541)
...+...+.+..-|...++.+.|..+|+..+.+.=...... +. ......|+..+--.+..++..|.+
T Consensus 201 ~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~-----~~--------~~~~~~~L~~fyd~ll~~l~~E~~ 267 (766)
T PF10191_consen 201 DAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQS-----DQ--------SQSFAEWLPSFYDELLSLLHQELK 267 (766)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhh-----cc--------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555567888888888888876654322221110 00 024678999998888899999999
Q ss_pred HHhhccCCCCCchhhhhhHHHHHHHHHHHhhc-hhhhhh-ccCCC-hh-HHHHHHHHHHHHHhhhHHHHhhccCC----c
Q 009180 152 LCDTVFSGPSSASIRVSCFSQIVKEGALDLLV-FPENVA-KCKKT-PE-KMFRTLDLYEAISDLSPDIASIFSFE----S 223 (541)
Q Consensus 152 L~~~vf~~~~~~~~~~~~F~~i~~~~~~~ll~-f~e~va-~~kr~-pe-klf~lLdmye~L~~l~p~~~~lf~~~----~ 223 (541)
-|.+|||.+ .. +...+....+..|-. |..-+. ..++. |. ++..++++|.+-.+..-.++.+|... .
T Consensus 268 w~~~vF~~~--~~----~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~ 341 (766)
T PF10191_consen 268 WCSQVFPDE--SP----VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESN 341 (766)
T ss_pred HHHHHcCCc--hh----HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999983 22 222222222333321 333332 11222 22 46677777766665555555555431 0
Q ss_pred hH-------HHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCcc
Q 009180 224 TS-------AVR-----------------------------SQAANSLIRLGEAVRTMLADFEAAIHKDTSKTPVPGGGV 267 (541)
Q Consensus 224 ~~-------~vr-----------------------------~~~~~~l~~L~~~~~~~f~ef~~~I~~~~s~~~~~dG~V 267 (541)
.. .+- .++.+..+.|.+++...|.-++++|.+=. ....|-++
T Consensus 342 l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~~~~~d~v~~L~~s~~k~f~lae~Av~RC~--~fT~G~~~ 419 (766)
T PF10191_consen 342 LSKVEELLQALFEPFKPYQQRYGELERRFLSAQLSALDLESAELSDAVRRLEESIPKLFGLAEEAVDRCI--AFTGGYGV 419 (766)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHhCCccH
Confidence 00 000 12334456666666667766666665311 12234455
Q ss_pred chhHHHHHHHHHHHH-hcHHHHHHHH
Q 009180 268 HPLTRYVMNYIAFLA-DYSGSLAEID 292 (541)
Q Consensus 268 H~lT~~vmnyl~~L~-~y~~~L~~iL 292 (541)
..+..-+=.++...+ .+..++..+-
T Consensus 420 ~~Ll~Ald~~~~~y~~~~~~~l~~lr 445 (766)
T PF10191_consen 420 PGLLKALDSIFSQYLSSLTATLRSLR 445 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444443333 4666666654
No 9
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=83 Score=35.71 Aligned_cols=209 Identities=12% Similarity=0.133 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcCCC-C-ccCCCCccchhHHHHHHHHHHHHhcHHHHHHHHhcCCCCCCCCCCCcc
Q 009180 231 AANSLIRLGEAVRTMLADFE-AAIHKDTS-K-TPVPGGGVHPLTRYVMNYIAFLADYSGSLAEIDAEWPLTSNSPLPEAY 307 (541)
Q Consensus 231 ~~~~l~~L~~~~~~~f~ef~-~~I~~~~s-~-~~~~dG~VH~lT~~vmnyl~~L~~y~~~L~~iL~~~~~~~~~~~p~~~ 307 (541)
+.-.+..|.-.+++.|..|. +.+..-.. + ..-.-+||-| |+-.+..+-...+.|+.+..
T Consensus 605 ls~tlgsllv~VkrqFdrfiq~qc~qieevki~kksk~gILP-------yv~rFenfa~raE~if~nae----------- 666 (867)
T KOG2148|consen 605 LSLTLGSLLVRVKRQFDRFIQNQCSQIEEVKIAKKSKIGILP-------YVFRFENFARRAEIIFENAE----------- 666 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------cHHHHHHHHHHHHHHHhhhh-----------
Confidence 34445556666777788884 33322111 1 1223456666 77778888888999987431
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHhHHHHhhhhhhhhhHHHHHHhhHHHHHHHhhccchhhhhchHHHHHHHHHHHH
Q 009180 308 FGSPESSDSISSPIAVRLAWLILVVLCKLDGKAELYKEVAQSYLFLANNLQYVVVKVRSSNLKFLLGEEWIVKHEAKVRQ 387 (541)
Q Consensus 308 ~~~~~~~~~~~s~l~~~i~~ii~~L~~nLe~Ksk~ykd~aL~~iFLmNN~~yI~~~v~~S~L~~lLG~~w~~~~~~~v~~ 387 (541)
..+.+......++.++..+++.-|..|.. .-+.+-+|-|+|++...+-. |+..--+.-...+......
T Consensus 667 ---------rRtdlekaYtklvravfvgiek~Aqq~pK-tp~dVv~mENyh~~y~tLs~--Lkis~lda~kkeaka~~~d 734 (867)
T KOG2148|consen 667 ---------RRTDLEKAYTKLVRAVFVGIEKIAQQDPK-TPADVVLMENYHHFYATLSD--LKISCLDAAKKEAKALYAD 734 (867)
T ss_pred ---------hcchHHHHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHhhHHHHHHHHHH--HhccchhHHHHHHHHHHHH
Confidence 22347777778888899999998888765 23678899999999876653 3322222223344556667
Q ss_pred HHHHHHHhcHHHHhccCCC--CC----------CC------CCChhHHHHHH-----HHHHHHHHHHHHhccceeccChH
Q 009180 388 YAANYERMGWDKVFASLPE--NP----------TA------EIPIPQVRNCF-----RRFNLSFEDTCKRHSSWIVSDPK 444 (541)
Q Consensus 388 ~~~~Y~~~sW~~vl~~L~~--~~----------~~------~~~r~~iKerf-----k~FN~~FeE~~~~Q~~w~VpD~~ 444 (541)
+.+.|+..+.|..+..|.. ++ +. ..+|..+|.-. +.--..+|.+|++=..--+...+
T Consensus 735 hl~ayV~~~~GrPLekln~Ffe~v~~~vaqGirpeeiSYQ~aFsk~elrkvi~qypgkEVkKglenlYKKveKnL~aeen 814 (867)
T KOG2148|consen 735 HLAAYVKESMGRPLEKLNTFFEGVNNKVAQGIRPEEISYQLAFSKQELRKVIKQYPGKEVKKGLENLYKKVEKNLLAEEN 814 (867)
T ss_pred HHHHHHHHHhcChHHHHHHHHHhhHHHHhcCCChhhhhHHHHhhHHHHHHHHHHcchhhHHHHHHHHHHHHHHhhhhhhh
Confidence 7888877777766654421 11 00 12233333222 12455678888773333344667
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc
Q 009180 445 LRDEIKISLAKRIAPVYRDFYEKYR 469 (541)
Q Consensus 445 LR~~Lr~~i~~~VvPaY~~F~~ry~ 469 (541)
|-+.+=.+.++-.+--|..|-+.-.
T Consensus 815 LLqvvW~~mqeeFi~qy~~f~~lIa 839 (867)
T KOG2148|consen 815 LLQVVWHKMQEEFIDQYESFEQLIA 839 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777666533
No 10
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=70.24 E-value=34 Score=40.04 Aligned_cols=50 Identities=18% Similarity=0.347 Sum_probs=36.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhccceecc--ChHHHHHHHHHHHHHHhHHHHHHH
Q 009180 413 PIPQVRNCFRRFNLSFEDTCKRHSSWIVS--DPKLRDEIKISLAKRIAPVYRDFY 465 (541)
Q Consensus 413 ~r~~iKerfk~FN~~FeE~~~~Q~~w~Vp--D~~LR~~Lr~~i~~~VvPaY~~F~ 465 (541)
-|+.|-...|.=| |++++.+|-.-.+. -| |.+.+|.+....|||+|.+=.
T Consensus 1013 ~kenI~ql~KSkn--l~dtvar~i~~~~Qtsg~-lQ~a~resm~SsviPafEKSc 1064 (1283)
T KOG1916|consen 1013 GKENINQLLKSKN--LEDTVARQIQAQFQTSGP-LQEALRESMESSVIPAFEKSC 1064 (1283)
T ss_pred HHHHHHHHHhhcc--HHHHHHHHHHHHHhccch-HHHHHHHHhhhhccHHHHHHH
Confidence 3556666677666 88888776544442 33 999999999999999997544
No 11
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=62.49 E-value=2.6e+02 Score=31.16 Aligned_cols=90 Identities=17% Similarity=0.292 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHHHHhhhHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCccchhHH
Q 009180 193 KTPEKMFRTLDLYEAISDLSPDIASIFSFESTSAVRSQAANSLIRLGEAVRTMLADFEAAIHKDTSKTPVPGGGVHPLTR 272 (541)
Q Consensus 193 r~peklf~lLdmye~L~~l~p~~~~lf~~~~~~~vr~~~~~~l~~L~~~~~~~f~ef~~~I~~~~s~~~~~dG~VH~lT~ 272 (541)
++++..|.+|+.|..|. ..|.+... +......++..+.+-+..+=..|...........+|..-..+|++.
T Consensus 326 ~s~~~~~~ll~~f~~L~-~Rp~I~~~--------l~~~~~~ll~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag 396 (579)
T PF08385_consen 326 SSPEEAFRLLQKFKSLL-NRPRIRKA--------LQEKYEQLLQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAG 396 (579)
T ss_pred CCHHHHHHHHHHHHhHh-cchHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCcHHHH
Confidence 67899999999999887 56766553 3445556666666555555445544432112233555566655444
Q ss_pred HHHHHHHHHH----hcHHHHHHHH
Q 009180 273 YVMNYIAFLA----DYSGSLAEID 292 (541)
Q Consensus 273 ~vmnyl~~L~----~y~~~L~~iL 292 (541)
.+.+++.|. .+...+..++
T Consensus 397 -~i~w~r~L~~ri~~~~~~~~~~~ 419 (579)
T PF08385_consen 397 -AIIWARQLERRIKEPMQRLKSLL 419 (579)
T ss_pred -HHHHHHHHHHHHhHHHHHHHHhc
Confidence 444444444 4555555555
No 12
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=61.18 E-value=2.8e+02 Score=32.20 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHhhHHHHHHHHHhcC-cccc-------chhhhcccChHHHHHHHHhHHHHHHHHH
Q 009180 71 MADLKAIADCMISAGYGKECARIYKIIRKSVVDEALYHLG-VERL-------NFNVIQKMDWDVLEIKIKNWLRAVRTAV 142 (541)
Q Consensus 71 i~~L~~Ia~~m~~~g~~~ec~~~Y~~~R~~~l~~sL~~L~-~e~l-------s~~~v~k~~w~~le~ki~~wi~~~~~av 142 (541)
...++.+|+.|..-+.+..|++.|+..+.-..+. ..++ .+.+ ...+...-. .........-+ .-+
T Consensus 128 ~~~M~~~A~vL~~fngg~~~i~~fi~k~~~f~~~--~~~~~~~~~~~~~~~~~l~d~~~~~-~~~~~~l~~~~----~~i 200 (710)
T PF07393_consen 128 YERMKEFAKVLLEFNGGSSCIDFFINKHEFFIDE--DQLDESNGFEDEEIWEKLSDPDSHP-PINEESLDAFF----EDI 200 (710)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHhChhhhhh--hhhccccccchhHHHHhccCccccc-ccchHHHHHHH----HHH
Confidence 4567888888887766678999999988655521 1111 0000 000110000 00011122222 334
Q ss_pred HHHHHHHHHHHhhccCCCCCch----hhhhhHHHHHHHHHHHhhchhhhhhccCCChhHHH-HHHHHHHHHHhhhHHHHh
Q 009180 143 KTVFAGERILCDTVFSGPSSAS----IRVSCFSQIVKEGALDLLVFPENVAKCKKTPEKMF-RTLDLYEAISDLSPDIAS 217 (541)
Q Consensus 143 ~~l~~~E~~L~~~vf~~~~~~~----~~~~~F~~i~~~~~~~ll~f~e~va~~kr~peklf-~lLdmye~L~~l~p~~~~ 217 (541)
+.++..|.++++.|||. ..+ +-..+|.+....-+..+|.-+..+ +++.-. .+-..|..+..+..++..
T Consensus 201 ~~~i~~e~~iI~~VFp~--~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~-----s~~~YLr~l~~~y~~t~~lv~~L~~ 273 (710)
T PF07393_consen 201 RDVINEESKIIDRVFPN--PEPVMQKFIERVFEQVIQEYIESLLEEASSI-----STLAYLRTLHGLYSQTKKLVDDLKE 273 (710)
T ss_pred HHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999987 433 334566666666666665544322 233222 222345555555555555
Q ss_pred hc
Q 009180 218 IF 219 (541)
Q Consensus 218 lf 219 (541)
.+
T Consensus 274 ~~ 275 (710)
T PF07393_consen 274 FF 275 (710)
T ss_pred hh
Confidence 43
No 13
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=53.11 E-value=82 Score=32.44 Aligned_cols=62 Identities=10% Similarity=0.200 Sum_probs=39.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhcc
Q 009180 373 LGEEWIVKHEAKVRQYAANYERMGWDKVFASLPENPTAEIPIPQVRNCFRRFNLSFEDTCKRHS 436 (541)
Q Consensus 373 LG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~~~~~~r~~iKerfk~FN~~FeE~~~~Q~ 436 (541)
++++.+..+...++.|..-|+. .+.+++-|.+-..++++-..||=..+.|-.+++++..+..
T Consensus 117 Ik~dYldvYa~lvk~YTd~yQ~--fn~~lSkls~~IsaG~DGn~VkFd~~~lk~~l~~~~~Ky~ 178 (308)
T TIGR02553 117 IGDSYLGVYENVVEGYTDFYQA--FSDILSKMQDWISPGKDGNNVKLDVGKLKALLQQLIDHLP 178 (308)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhcccCCCCCeeeeCHHHHHHHHHHHHHHhc
Confidence 4567777788888899888864 6788887765444444444444445555555555555444
No 14
>KOG3821 consensus Heparin sulfate cell surface proteoglycan [Signal transduction mechanisms]
Probab=45.98 E-value=11 Score=41.41 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccceeccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHH
Q 009180 414 IPQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGN 493 (541)
Q Consensus 414 r~~iKerfk~FN~~FeE~~~~Q~~w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~ 493 (541)
|..+-.+.+.|++.|+|+.+.=. +....+..-.|+++|-.....+ -+|-+...-|..++-+.+|+
T Consensus 97 r~~l~s~~r~F~E~f~ell~~ae--------------~~l~~mF~~tYg~ly~qn~~~~-~dlFtel~~y~~~~~~nlee 161 (563)
T KOG3821|consen 97 RFVLASNARKFDEFFLELLRNAE--------------NSLNAMFSKTYGSLYPQNAELF-NDLFTELKLYYVGSNVNLEE 161 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhhhhHHHHHHH-HHHHHHHHHHhccccCCHHH
Confidence 45566788999999999987632 3455677778888886655442 13322334688899999999
Q ss_pred HHHhhhC
Q 009180 494 HLSDLFH 500 (541)
Q Consensus 494 ~L~~LF~ 500 (541)
+|++||.
T Consensus 162 ~l~eff~ 168 (563)
T KOG3821|consen 162 TLNEFFA 168 (563)
T ss_pred HHHHHHH
Confidence 9999885
No 15
>PHA01746 hypothetical protein
Probab=42.56 E-value=9.7 Score=32.94 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=15.8
Q ss_pred HHHHHHHhcccccCCCCCCCCCccccCHHH
Q 009180 461 YRDFYEKYRVRVLRDPSTGNEPLVRFAPDD 490 (541)
Q Consensus 461 Y~~F~~ry~~~~~~~~~k~~~KYiKYtpe~ 490 (541)
-..|++||...| .|||||+|.+
T Consensus 76 Ia~FLeKYS~~L--------nkYVkFs~~n 97 (131)
T PHA01746 76 IAEFLEKYSDFL--------NEYVKFTPRN 97 (131)
T ss_pred HHHHHHHHHHHH--------HHHeeeccCC
Confidence 456888888763 3888888754
No 16
>PF15264 TSSC4: Tumour suppressing sub-chromosomal transferable candidate 4
Probab=40.32 E-value=9.4 Score=33.66 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.8
Q ss_pred CCCCCCCCCccccCHHHHH
Q 009180 474 RDPSTGNEPLVRFAPDDLG 492 (541)
Q Consensus 474 ~~~~k~~~KYiKYtpe~le 492 (541)
.++-+||+||.|||-+++.
T Consensus 55 PDYv~nP~KwTkYSL~dv~ 73 (115)
T PF15264_consen 55 PDYVRNPEKWTKYSLDDVS 73 (115)
T ss_pred CCCcCCcccceeeecCCCc
Confidence 3788999999999999983
No 17
>COG2733 Predicted membrane protein [Function unknown]
Probab=38.64 E-value=2.9e+02 Score=29.59 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=60.0
Q ss_pred HHHHHHhcHHHHhccCCCCCCCCCChhHHHH-HHHHHHHHHHHHHHhccceeccChHHHHHHHHHHH---HHHhHHHHHH
Q 009180 389 AANYERMGWDKVFASLPENPTAEIPIPQVRN-CFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLA---KRIAPVYRDF 464 (541)
Q Consensus 389 ~~~Y~~~sW~~vl~~L~~~~~~~~~r~~iKe-rfk~FN~~FeE~~~~Q~~w~VpD~~LR~~Lr~~i~---~~VvPaY~~F 464 (541)
...|....|+....+|..+-.+ +-..++. .++.|+.-++++ +.|++||..|..-+. +.+++-|..+
T Consensus 291 i~~~~~~~w~~~~~~l~~D~e~--~~s~l~~~l~~~~~~~Ge~l--------~~D~~lr~kln~~~~~aa~~l~e~~~~~ 360 (415)
T COG2733 291 IATAAGDMWTSLSEWLKEDYES--EDSMLRKRLARAVQSVGEEL--------IADDALRAKLNEHLVQAAERLAEEKHAE 360 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcccC--chhHHHHHHHHHHHHHHHHH--------hccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 6788999999998888765421 1122333 457788888776 459999998876553 3456666666
Q ss_pred HHHhcccccCCCCCCCCCccccCHHHHHHHHHh
Q 009180 465 YEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSD 497 (541)
Q Consensus 465 ~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~ 497 (541)
+.++-.- .-=+|+.+++.++|..
T Consensus 361 it~~I~d----------Tv~~wD~~elsr~iel 383 (415)
T COG2733 361 ITKHISD----------TVKRWDAEELSRQIEL 383 (415)
T ss_pred HHHHHHH----------HHhhcCHHHHHHHHHH
Confidence 6665432 1226899999888864
No 18
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=37.19 E-value=1e+02 Score=30.79 Aligned_cols=34 Identities=15% Similarity=0.332 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhccceeccChHH--HHHHHHHH
Q 009180 418 RNCFRRFNLSFEDTCKRHSSWIVSDPKL--RDEIKISL 453 (541)
Q Consensus 418 Kerfk~FN~~FeE~~~~Q~~w~VpD~~L--R~~Lr~~i 453 (541)
|-|+|+-|++||-+ ++++-.=|...| =|-||.+|
T Consensus 127 RRRLkKVNEAFE~L--KRrT~~NPNQRLPKVEILRsAI 162 (284)
T KOG3960|consen 127 RRRLKKVNEAFETL--KRRTSSNPNQRLPKVEILRSAI 162 (284)
T ss_pred HHHHHHHHHHHHHH--HhhcCCCccccccHHHHHHHHH
Confidence 45799999999988 344444344333 14566666
No 19
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=35.87 E-value=22 Score=26.73 Aligned_cols=27 Identities=37% Similarity=0.314 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHHHHHHhcCccCCCCcc
Q 009180 1 MQTAMKRLEREFYQMLKINGEYLDHESV 28 (541)
Q Consensus 1 ~~~am~~Le~eF~~lL~~~~~~~~p~~~ 28 (541)
||+||+.|-+ .|..|.....-++|+.+
T Consensus 7 mqIaMK~lPE-ak~~L~k~GIeLsme~~ 33 (56)
T PF10815_consen 7 MQIAMKYLPE-AKEELDKKGIELSMEML 33 (56)
T ss_pred HHHHHHHhHH-HHHHHHHcCccCCHHHH
Confidence 6999999987 99999998877776654
No 20
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.91 E-value=1.5e+02 Score=33.62 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHhhHH-HHHHHhhcc-ch--hhhhchHHHHHHHHHHHHHHHHHHHhcHHHHhccCCCCCCCCCChhHHHHHHHHH
Q 009180 349 SYLFLANNLQ-YVVVKVRSS-NL--KFLLGEEWIVKHEAKVRQYAANYERMGWDKVFASLPENPTAEIPIPQVRNCFRRF 424 (541)
Q Consensus 349 ~~iFLmNN~~-yI~~~v~~S-~L--~~lLG~~w~~~~~~~v~~~~~~Y~~~sW~~vl~~L~~~~~~~~~r~~iKerfk~F 424 (541)
.-||+.||.| ||...|-.| ++ ..-+|+. +.-..+..-...|+ +|-+- +=.++++||.|
T Consensus 967 kLiffiNnLHahIMeailhStgleFehqieEa---KdldeLiiiHdehL--atihd-------------hClLrdefkaf 1028 (1121)
T KOG4344|consen 967 KLIFFINNLHAHIMEAILHSTGLEFEHQIEEA---KDLDELIIIHDEHL--ATIHD-------------HCLLRDEFKAF 1028 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhh---cCHHHHHHHHHHHH--HHHHH-------------hhhHHHHHHHH
Confidence 4589999986 788888665 32 2223321 11122222233343 56443 34467899999
Q ss_pred HHHHHHHHHh
Q 009180 425 NLSFEDTCKR 434 (541)
Q Consensus 425 N~~FeE~~~~ 434 (541)
-.+.+.++..
T Consensus 1029 keAidkifhL 1038 (1121)
T KOG4344|consen 1029 KEAIDKIFHL 1038 (1121)
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 21
>PF15335 CAAP1: Caspase activity and apoptosis inhibitor 1
Probab=27.96 E-value=1.1e+02 Score=24.12 Aligned_cols=34 Identities=26% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHHhhHHHHHHHHHhcCccccchhhhcccChHHHHH
Q 009180 91 ARIYKIIRKSVVDEALYHLGVERLNFNVIQKMDWDVLEI 129 (541)
Q Consensus 91 ~~~Y~~~R~~~l~~sL~~L~~e~ls~~~v~k~~w~~le~ 129 (541)
+..|++-|.+.+++++..+|..+ +++|-.+.+..
T Consensus 5 is~Yi~Dr~Eml~Q~F~~l~~kk-----l~~MlPd~LK~ 38 (64)
T PF15335_consen 5 ISFYIDDRKEMLRQCFSVLKEKK-----LQKMLPDILKG 38 (64)
T ss_pred HHHHHccHHHHHHHHHHHcCHHH-----HHHHCHHHHhc
Confidence 57899999999999999998763 46665555543
No 22
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=25.11 E-value=44 Score=37.84 Aligned_cols=95 Identities=20% Similarity=0.290 Sum_probs=60.2
Q ss_pred HHHHHhcHHHHhccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHh----cccee-----------------ccChHHHHH
Q 009180 390 ANYERMGWDKVFASLPENPTAEIPIPQVRNCFRRFNLSFEDTCKR----HSSWI-----------------VSDPKLRDE 448 (541)
Q Consensus 390 ~~Y~~~sW~~vl~~L~~~~~~~~~r~~iKerfk~FN~~FeE~~~~----Q~~w~-----------------VpD~~LR~~ 448 (541)
..|++.-|..|-.....+ ..|..||..||..... -+-|. +.|..|| .
T Consensus 64 ~~YL~~R~~~vk~~~~T~-----------~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALr-a 131 (835)
T KOG2047|consen 64 YDYLKARRAQVKHLCPTD-----------PAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALR-A 131 (835)
T ss_pred HHHHHHHHHHhhccCCCC-----------hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHH-h
Confidence 357777787775433322 2588888888876651 12222 1233333 1
Q ss_pred HHHHHHHHHhHHHHHHHHHhcccccCCCC-CCCCCccccCHHHHHHHHHhhh
Q 009180 449 IKISLAKRIAPVYRDFYEKYRVRVLRDPS-TGNEPLVRFAPDDLGNHLSDLF 499 (541)
Q Consensus 449 Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~-k~~~KYiKYtpe~le~~L~~LF 499 (541)
|=..--..|-|.|-+|++.++-- +++ +--..|+|+.|++.|++|.-|=
T Consensus 132 LpvtqH~rIW~lyl~Fv~~~~lP---ets~rvyrRYLk~~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 132 LPVTQHDRIWDLYLKFVESHGLP---ETSIRVYRRYLKVAPEAREEYIEYLA 180 (835)
T ss_pred CchHhhccchHHHHHHHHhCCCh---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22233457899999999997653 332 3346899999999999998764
No 23
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=24.91 E-value=9.7e+02 Score=26.48 Aligned_cols=41 Identities=10% Similarity=0.310 Sum_probs=32.3
Q ss_pred HHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHHHhhhCC
Q 009180 455 KRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDLFHG 501 (541)
Q Consensus 455 ~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~LF~g 501 (541)
..+-++|.-++++|... .+|....| |||-++..+|.++-..
T Consensus 144 d~~G~~yE~ll~~fa~~----~~k~~GEf--yTP~~v~~liv~~l~~ 184 (489)
T COG0286 144 DLFGDAYEYLLRKFAEA----EGKEAGEF--YTPREVSELIVELLDP 184 (489)
T ss_pred cchhHHHHHHHHHHHHh----cCCCCCcc--CChHHHHHHHHHHcCC
Confidence 46778999999999875 34433344 9999999999998776
No 24
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=24.86 E-value=58 Score=23.65 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=11.7
Q ss_pred hhhchHHHHHHHHHH
Q 009180 371 FLLGEEWIVKHEAKV 385 (541)
Q Consensus 371 ~lLG~~w~~~~~~~v 385 (541)
.+||++|...+..+.
T Consensus 21 ~lLGe~W~~~~v~~a 35 (45)
T PF11880_consen 21 HLLGENWQQDYVERA 35 (45)
T ss_pred HHhhhhHHHHHHHHH
Confidence 589999998876554
No 25
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=23.29 E-value=70 Score=24.86 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCCCCCCCccccCHHHHHHHHHhhh
Q 009180 475 DPSTGNEPLVRFAPDDLGNHLSDLF 499 (541)
Q Consensus 475 ~~~k~~~KYiKYtpe~le~~L~~LF 499 (541)
.+.+.+-.++++++++||++|-+|-
T Consensus 17 P~~~~~P~W~~~~~~eVe~~I~kla 41 (60)
T PF08069_consen 17 PYRRSPPSWLKYSPEEVEELIVKLA 41 (60)
T ss_dssp -S-SS--TT--S-HHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHH
Confidence 3445566899999999999999984
No 26
>COG4907 Predicted membrane protein [Function unknown]
Probab=22.19 E-value=2.3e+02 Score=31.00 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhc-cceeccChHHHHHHHHHHHHHHhHHHHHHHHH
Q 009180 419 NCFRRFNLSFEDTCKRH-SSWIVSDPKLRDEIKISLAKRIAPVYRDFYEK 467 (541)
Q Consensus 419 erfk~FN~~FeE~~~~Q-~~w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~r 467 (541)
+.||+|-+.|-.+-+.- ..-.|=|.-|--...--|.++|+-||+.-.+.
T Consensus 489 ~aFKnfLsd~s~lke~~pesI~~W~~ylVYatALGV~dkVvkam~~~~~~ 538 (595)
T COG4907 489 QAFKNFLSDYSQLKEAKPESIHLWEQYLVYATALGVSDKVVKAMRKALDM 538 (595)
T ss_pred HHHHHHHHhHHHHhhCCCcceehHhhhhhhhhhhccHHHHHHHHHHhCcH
Confidence 45777777776553221 12222233333444556889999999977654
No 27
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=20.27 E-value=1.2e+02 Score=30.88 Aligned_cols=55 Identities=13% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHHHHhhhCCCCCCCCcCCCCccCCCCCCC
Q 009180 456 RIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNHLSDLFHGTIGSGSVSSHSTAPYSRTSG 521 (541)
Q Consensus 456 ~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~L~~LF~g~~~~~~~~~~~~~~~~~~~~ 521 (541)
.+=.+|..|+.++... ..|... .-|||..|-.++.++-... ....+-=|+.||||
T Consensus 5 ~~g~~yE~~l~~~~~~----~~k~~G--~~~TP~~i~~l~~~~~~~~-----~~~~VlDPacGsG~ 59 (311)
T PF02384_consen 5 ILGDLYEYFLKKFAKE----SRKKLG--QFYTPREIVDLMVKLLNPK-----KGDSVLDPACGSGG 59 (311)
T ss_dssp HHHHHHHHHHHHHHHC----TTTSCG--GC---HHHHHHHHHHHTT------TTEEEEETT-TTSH
T ss_pred HHHHHHHHHHHHHHHH----hccccc--eeehHHHHHHHHHhhhhcc-----ccceeechhhhHHH
Confidence 3456799999998542 223322 4499999999999998332 23345556666654
No 28
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=20.13 E-value=72 Score=35.96 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccceeccChHHHHHHHHHHHHHHhHHHHHHHHHhcccccCCCCCCCCCccccCHHHHHHH
Q 009180 415 PQVRNCFRRFNLSFEDTCKRHSSWIVSDPKLRDEIKISLAKRIAPVYRDFYEKYRVRVLRDPSTGNEPLVRFAPDDLGNH 494 (541)
Q Consensus 415 ~~iKerfk~FN~~FeE~~~~Q~~w~VpD~~LR~~Lr~~i~~~VvPaY~~F~~ry~~~~~~~~~k~~~KYiKYtpe~le~~ 494 (541)
..+..+.++|.+.|+++.+.= .+....+..-.|+.+|......+ -++-..-..|+..+.-.|+++
T Consensus 90 ~~l~~~~~~F~~~f~~ll~~s--------------e~~~~~~F~~~Y~~ly~~~~~~~-~~lf~~l~~y~~g~~~~l~~~ 154 (557)
T PF01153_consen 90 HLLSTRARKFDEFFRELLRQS--------------ENSLHSMFSRTYGSLYPQNRPIF-QDLFTDLRRYYLGSNVNLEEA 154 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHTTHHHHCTHHHH-HHHHHHHHHHHCCS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCCHHHH
Confidence 446677888888888886542 22344455555665555443321 011112235677777889999
Q ss_pred HHhhhC
Q 009180 495 LSDLFH 500 (541)
Q Consensus 495 L~~LF~ 500 (541)
++++|.
T Consensus 155 l~~Ff~ 160 (557)
T PF01153_consen 155 LNEFFD 160 (557)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999885
Done!